Citrus Sinensis ID: 037006

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-
Protein Sequence
MDRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTRKKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNGKVGRDQMEGKFGMKKKKLPRPRVMRGSFDRSMPLAVL
Secondary Structure (PSIPRED)
ccccccccccccEEEEEcccccccccEEEccccccccEEEEEEEccccccccccccccccccccccHHHHccccccccccccccccccHHHHHcccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccEEEEEEEccccccEEEEccccccccEEEccccccHHHHHHHcccccccccccccHHHHHHccccHHHHHHccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccEcccccEHHHHHHHccccEEEEEccHHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHcHHHcccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccEEcc
Coil and Loop (DISEMBL)
mdrlvslepsnlvairiepgqkcsgeltlrnvmhtmpvafriqptnkarytvkpqsgiisplaTLSVEIayhlppgsvlpdsfphcddsfllhsvvvpgagikdatstldsvpsdwfttrkkqvfidsgikimfVGSPVLVLLVKDGEMDDLREVLersdpawnpadsadaqGQTLLHIAIAQRRPDIVQLLLEfgpdvesqgrcgcstpLEAAAAAGEALIVELLLARKAstersetstwgpihlaLRGGHLEVLKLLLIKGanvnaltkdgntalHLAVEDRRRDCARLLLAngarpdirnardgdtplhiTASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAaingkdlhgwtALHRASFKGKIEVVRMLIDKgidvdakdedgytALHCAVESGHTDVTELLVKKGadveartsknvspmQIAECLHYAGISRIlmhggatkdgiqqtnLRQVSIqfgngkvgrdqmegkfgmkkkklprprvmrgsfdrsmplavl
Flexible Loop (DISEMBL)
mdrlvslepsnlvairiepgqkcSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDAtstldsvpsdwfttRKKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKAStersetstwgpihlALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLangarpdirnardgdTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEartsknvspmqIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFgngkvgrdqmegkfgmkkkklprprvmrgsfdrsmplavl
Low Complexity Region (SEG)
MDRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTRKKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPleaaaaagealivelllaRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEdrrrdcarlllaNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNGKVGRDQMEGKFGMKKKKLPRPRVMRGSFDRSMPLAVL
Disordered region (IsUnstruct)
***********LVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTRKKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDL*********************QTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKAS*****TSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR***NVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQF****************************************
Disordered Region (DISOPRED)
**RLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTRKKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNGKVGRDQMEGKFGMKKKKLPRPRVMRGSFDRSMPLAVL
Disordered Region (DISEMBL)
MDRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTRKKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARK*********TWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNGKVGRDQMEGKFGMKKKKLPRPRVMRGSFDRSMPLAVL
Disordered Region (DISPRO)
*DRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTRKKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNGKVGRDQMEGKFGMKKK***********FDRSMPLAVL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTRKKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNGKVGRDQMEGKFGMKKKKLPRPRVMRGSFDRSMPLAVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	541	2.2.26 [Sep-21-2011]
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.576	0.165	0.329	3e-37
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	yes	no	0.611	0.168	0.311	4e-37
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.611	0.075	0.308	7e-37
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	no	0.576	0.167	0.329	2e-36
Q8NFD2	765	Ankyrin repeat and protei	no	no	0.545	0.385	0.314	2e-35
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	no	0.615	0.085	0.326	3e-35
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.615	0.084	0.323	2e-34
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.617	0.283	0.307	4e-34
Q8BZ25	745	Ankyrin repeat and protei	no	no	0.613	0.445	0.298	5e-34
Q9ULJ7	1429	Ankyrin repeat domain-con	no	no	0.552	0.209	0.333	5e-31

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score =  157 bits (396), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 167/340 (49%), Gaps = 28/340 (8%)

Query: 150 DDLRE--VLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGC 207
           DD R   VL ++DP  NP D     G T LHIA      ++ QLLL  G  V    + G 
Sbjct: 184 DDTRTAAVLLQNDP--NP-DVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQNGI 240

Query: 208 STPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVN 267
            TPL  A+  G  ++V LLL R A  E        P+H A R GH+ + ++LL  GA + 
Sbjct: 241 -TPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQ 299

Query: 268 ALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLL 327
           A TK+G + +H+A +    DC RLLL   A  D     D  TPLH+ A  G+ ++ K+LL
Sbjct: 300 AKTKNGLSPIHMAAQGDHLDCVRLLLQYDAEID-DITLDHLTPLHVAAHCGHHRVAKVLL 358

Query: 328 QKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAI 387
            KGA    R  +G T                      L +A +K  VR M+ L++ GA+I
Sbjct: 359 DKGAKPNSRALNGFTP---------------------LHIACKKNHVRVMELLLKTGASI 397

Query: 388 NGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLV 447
           +     G T LH ASF G + +V+ L+ +G   +  +    T LH A  +GHT+V + L+
Sbjct: 398 DAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL 457

Query: 448 KKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKD 487
           +  A V A+   + +P+  A  + +  + ++L+   A  +
Sbjct: 458 QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 497

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.
Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score =  156 bits (394), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 174/347 (50%), Gaps = 16/347 (4%)

Query: 175 TLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTE 234
           T LH+A  +   ++V+LLL+ G  ++++ R G  TPL   A +G   +VE+LL R A   
Sbjct: 253 TPLHVASKRGNANMVKLLLDRGAKIDAKTRDGL-TPLHCGARSGHEQVVEMLLDRSAPIL 311

Query: 235 RSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLA 294
               +   P+H+A +G HL  ++LLL     V+ +T D  TALH+A        A++LL 
Sbjct: 312 SKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAAHCGHYKVAKVLLD 371

Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
             A P+ + A +G TPLHI       ++++LLL+ GA+     +SG T   VAA  GH  
Sbjct: 372 KKASPNAK-ALNGFTPLHIACKKNRIRVMELLLKHGASIQAVTESGLTPIHVAAFMGHVN 430

Query: 355 LFDAL------------KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRAS 402
           +   L            +   +L +AAR G+   ++ L++ GA +  K     T LH ++
Sbjct: 431 IVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISA 490

Query: 403 FKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVS 462
             GK ++V+ L+ +G   +A    GYT LH A   GH DV   L+  GA +   T K  +
Sbjct: 491 RLGKADIVQQLLQQGASPNAATTSGYTPLHLAAREGHEDVAAFLLDHGASLSITTKKGFT 550

Query: 463 PMQIAECLHYAGISRILMHGGATKDGIQQTNLR--QVSIQFGNGKVG 507
           P+ +A       ++ +L+   A+ D   ++ L    V+  + N KV 
Sbjct: 551 PLHVAAKYGKLEVASLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVA 597

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score =  155 bits (392), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 174/347 (50%), Gaps = 16/347 (4%)

Query: 175 TLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTE 234
           T LH+A  +   ++V+LLL+ G  ++++ R G  TPL   A +G   +VE+LL R A   
Sbjct: 270 TPLHVASKRGNANMVKLLLDRGAKIDAKTRDGL-TPLHCGARSGHEQVVEMLLDRAAPIL 328

Query: 235 RSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLA 294
               +   P+H+A +G HL  ++LLL     V+ +T D  TALH+A        A++LL 
Sbjct: 329 SKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAAHCGHYKVAKVLLD 388

Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
             A P+ + A +G TPLHI       ++++LLL+ GA+     +SG T   VAA  GH  
Sbjct: 389 KKANPNAK-ALNGFTPLHIACKKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVN 447

Query: 355 LFDAL------------KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRAS 402
           +   L            +   +L +AAR G+   ++ L++ GA +  K     T LH ++
Sbjct: 448 IVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISA 507

Query: 403 FKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVS 462
             GK ++V+ L+ +G   +A    GYT LH +   GH DV   L+  GA +   T K  +
Sbjct: 508 RLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFT 567

Query: 463 PMQIAECLHYAGISRILMHGGATKDGIQQTNLR--QVSIQFGNGKVG 507
           P+ +A       ++ +L+   A+ D   ++ L    V+  + N KV 
Sbjct: 568 PLHVAAKYGKLEVANLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVA 614

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score =  154 bits (388), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 169/340 (49%), Gaps = 28/340 (8%)

Query: 150 DDLRE--VLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGC 207
           DD R   VL ++DP  NP D     G T LHIA      ++ QLLL  G  V    + G 
Sbjct: 180 DDTRTAAVLLQNDP--NP-DVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQNGI 236

Query: 208 STPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVN 267
            TPL  A+  G  ++V LLL R A  E        P+H A R GH+ + ++LL  GA + 
Sbjct: 237 -TPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRISEILLDHGAPIQ 295

Query: 268 ALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLL 327
           A TK+G + +H+A +    DC RLLL   A  D     D  TPLH+ A  G+ ++ K+LL
Sbjct: 296 AKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEID-DITLDHLTPLHVAAHCGHHRVAKVLL 354

Query: 328 QKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAI 387
            KGA    R  +G T                      L +A +K  +R M+ L++ GA+I
Sbjct: 355 DKGAKPNSRALNGFTP---------------------LHIACKKNHIRVMELLLKTGASI 393

Query: 388 NGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLV 447
           +     G T LH ASF G + +V+ L+ +G   +  +    T LH A  +GHT+V + L+
Sbjct: 394 DAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL 453

Query: 448 KKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKD 487
           +  A   A+   + +P+  A  + + G+ ++L+  GA+ +
Sbjct: 454 QNKAKANAKAKDDQTPLHCAARIGHTGMVKLLLENGASPN 493

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q8NFD2|ANKK1_HUMAN Ankyrin repeat and protein kinase domain-containing protein 1 OS=Homo sapiens GN=ANKK1 PE=2 SV=1

 Score =  150 bits (379), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 160/318 (50%), Gaps = 23/318 (7%)

Query: 175 TLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTE 234
           T LH  +AQ   + V+LLL    DV+ Q   G  TPL  AA   +  +  LLLA  A   
Sbjct: 364 TPLHFLVAQGSVEQVRLLLAHEVDVDCQTASG-YTPLLIAAQDQQPDLCALLLAHGADAN 422

Query: 235 RSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLA 294
           R +   W P+H A + G     +LLL  GA V+A  ++G T LHLA ++   + ARLL++
Sbjct: 423 RVDEDGWAPLHFAAQNGDDGTARLLLDHGACVDAQEREGWTPLHLAAQNNFENVARLLVS 482

Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
             A P++  A +G TPLH+ A  G+  +VKLL  +GA    + ++ +T   +A E     
Sbjct: 483 RQADPNLHEA-EGKTPLHVAAYFGHVSLVKLLTSQGAELDAQQRNLRTPLHLAVE----- 536

Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI 414
                           +G+VR +Q L+++GA  +  D  G+  LH A+ +GK  + +ML+
Sbjct: 537 ----------------RGKVRAIQHLLKSGAVPDALDQSGYGPLHTAAARGKYLICKMLL 580

Query: 415 DKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAG 474
             G  ++     G+T LH A   GH ++  LL +  A++ A  + N +P+ +A       
Sbjct: 581 RYGASLELPTHQGWTPLHLAAYKGHLEIIHLLAESHANMGALGAVNWTPLHLAARHGEEA 640

Query: 475 ISRILMHGGATKDGIQQT 492
           +   L+  GA  +  +Q+
Sbjct: 641 VVSALLQCGADPNAAEQS 658

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score =  150 bits (378), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/349 (32%), Positives = 177/349 (50%), Gaps = 16/349 (4%)

Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKAS 232
           G T LH+A  +   ++V+LLL+ G  ++++ R G  TPL  AA +G   +VELLL RKA 
Sbjct: 266 GITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGL-TPLHCAARSGHDQVVELLLERKAP 324

Query: 233 TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLL 292
                 +   P+H+A +G H+E +K LL   A V+ +T D  TALH+A         +LL
Sbjct: 325 LLARTKNGLSPLHMAAQGDHVECVKHLLQYKAPVDDVTLDYLTALHVAAHCGHYRVTKLL 384

Query: 293 LANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
           L   A P+ R A +G TPLHI       ++++LL++ GA+     +SG T   VAA  GH
Sbjct: 385 LDKRANPNAR-ALNGFTPLHIACKKNRIKVMELLVKYGASIQAITESGLTPIHVAAFMGH 443

Query: 353 ------------SRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHR 400
                       S     ++   +L +AAR G+V  ++ L+  GA ++ +     T LH 
Sbjct: 444 LNIVLLLLQNGASPDVTNIRGETALHMAARAGQVEVVRCLLRNGALVDARAREEQTPLHI 503

Query: 401 ASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKN 460
           AS  GK E+V++L+      DA   +GYT LH +   G  DV  +L++ GA     T K 
Sbjct: 504 ASRLGKTEIVQLLLQHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSLATKKG 563

Query: 461 VSPMQIAECLHYAGISRILMHGGATKDGIQQTNLR--QVSIQFGNGKVG 507
            +P+ +A       ++++L+   A  D   +  L    V+  + N KV 
Sbjct: 564 FTPLHVAAKYGSLDVAKLLLQRRAAADSAGKNGLTPLHVAAHYDNQKVA 612

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 176/349 (50%), Gaps = 16/349 (4%)

Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKAS 232
           G T LH+A  +   ++V+LLL+ G  ++++ R G  TPL  AA +G   +VELLL R A 
Sbjct: 266 GITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGL-TPLHCAARSGHDQVVELLLERGAP 324

Query: 233 TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLL 292
                 +   P+H+A +G H+E +K LL   A V+ +T D  TALH+A         +LL
Sbjct: 325 LLARTKNGLSPLHMAAQGDHVECVKHLLQHKAPVDDVTLDYLTALHVAAHCGHYRVTKLL 384

Query: 293 LANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
           L   A P+ R A +G TPLHI       ++++LL++ GA+     +SG T   VAA  GH
Sbjct: 385 LDKRANPNAR-ALNGFTPLHIACKKNRIKVMELLVKYGASIQAITESGLTPIHVAAFMGH 443

Query: 353 ------------SRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHR 400
                       S     ++   +L +AAR G+V  ++ L+  GA ++ +     T LH 
Sbjct: 444 LNIVLLLLQNGASPDVTNIRGETALHMAARAGQVEVVRCLLRNGALVDARAREEQTPLHI 503

Query: 401 ASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKN 460
           AS  GK E+V++L+      DA   +GYT LH +   G  DV  +L++ GA     T K 
Sbjct: 504 ASRLGKTEIVQLLLQHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSLATKKG 563

Query: 461 VSPMQIAECLHYAGISRILMHGGATKDGIQQTNLR--QVSIQFGNGKVG 507
            +P+ +A       ++++L+   A  D   +  L    V+  + N KV 
Sbjct: 564 FTPLHVAAKYGSLDVAKLLLQRRAAADSAGKNGLTPLHVAAHYDNQKVA 612

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score =  146 bits (368), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/358 (30%), Positives = 170/358 (47%), Gaps = 24/358 (6%)

Query: 172  QGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKA 231
             G+T+LH A+     D+V LL+  G +V +       T L  AA +G   +V  L+  KA
Sbjct: 802  NGETVLHYAVESGNLDLVSLLIHNGANVNN-----AKTILHFAAKSGNLNLVNWLIKNKA 856

Query: 232  STERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARL 291
                   S    +H A   G+L ++  L+   A+++A T  G T LH A +    +    
Sbjct: 857  DIHAKTNSGETILHFAAESGNLNLVNWLIKNKADIHAKTNSGETILHFAAKSGNLNLVNW 916

Query: 292  LLANGARPDIR-NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAEC 350
            L+ N A  DI      G+T LH  A  G   +V  L++  A+ + +  SG+T    AAE 
Sbjct: 917  LIKNKA--DIHAKTNSGETILHFAAKSGNLNLVNWLIKNKADIHAKTNSGETILHFAAES 974

Query: 351  GHSRLFDAL---------KLGDSLC---VAARKGEVRTMQRLIEAGAAINGKDLHGWTAL 398
            G+  L   L         K  D L     A   G +  +  LI  G  +N K   G T L
Sbjct: 975  GNLNLVSLLIHNGTDINTKTDDGLTALHYAVESGNLNLVSLLIHKGIDVNAKTNSGETIL 1034

Query: 399  HRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTS 458
            H A   G +++V +L+ +G DV+AK +DG TALH AVES +  +  LL+  GADV A+ +
Sbjct: 1035 HFAVDLGSLDLVSLLMVRGADVNAKTDDGLTALHYAVESDNLALVSLLMVYGADVNAKNN 1094

Query: 459  KNVSPMQIAECLHYAGISRILMHGGA---TKDGIQQTNLRQVSIQFGNGKVGRDQMEG 513
               +P+  A   +   +  +L+H GA   TK+   +T L  + ++F N  + +  + G
Sbjct: 1095 SGETPLHYAVIFNSLDLVSLLIHNGADINTKNNSGETVLNSI-MEFNNCNILKSFILG 1151

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q8BZ25|ANKK1_MOUSE Ankyrin repeat and protein kinase domain-containing protein 1 OS=Mus musculus GN=Ankk1 PE=2 SV=1

 Score =  145 bits (367), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 168/355 (47%), Gaps = 23/355 (6%)

Query: 150 DDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCST 209
           D L+ +L+ SD     A        T LH  +A    + V+LLL    DV+ Q   G  T
Sbjct: 347 DSLKWILQLSDSKSLVASDVYENRVTPLHFLVAGGSLEQVRLLLSHDVDVDCQTASG-YT 405

Query: 210 PLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNAL 269
           PL  A    +  +  LLLA  A T  ++   W P+H A + G     +LLL  GA VNA 
Sbjct: 406 PLLIATQDQQPDLCALLLAHGADTNLADEDGWAPLHFAAQNGDDHTARLLLDHGALVNAR 465

Query: 270 TKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQK 329
             +G T LHLA ++   + ARLL++  A      A +G TPLH+ A  G+  +VKLL  +
Sbjct: 466 EHEGWTPLHLAAQNNFENVARLLVSRQADLSPHEA-EGKTPLHVAAYFGHIGLVKLLSGQ 524

Query: 330 GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAING 389
           GA    + ++ +T   +A E                     +G+VR +Q L++ GA  + 
Sbjct: 525 GAELDAQQRNLRTPLHLAVE---------------------RGKVRAIQHLLKCGALPDA 563

Query: 390 KDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKK 449
            D  G++ LH A+ +GK  + +ML+  G  ++ + + G+T LH A   GH ++   L K 
Sbjct: 564 LDHSGYSPLHIAAARGKDLIFKMLLRYGASLELRTQQGWTPLHLATYKGHLEIIHQLAKS 623

Query: 450 GADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNG 504
             D++A  S   +P+ +A      G+   L+  GA  +  +Q+    + +    G
Sbjct: 624 HVDLDALGSMQWTPLHLAAFQGEEGVMLALLQCGANPNAAEQSGWTPLHLAVHKG 678

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ULJ7|ANR50_HUMAN Ankyrin repeat domain-containing protein 50 OS=Homo sapiens GN=ANKRD50 PE=1 SV=4

 Score =  136 bits (342), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 158/333 (47%), Gaps = 34/333 (10%)

Query: 182 AQRRPDIVQLLLEFGPDV---ESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSET 238
           A  R D ++ LL+ G  V   +S GR    T L  AA +G   +V LL++R A  E  + 
Sbjct: 521 ALEREDSIRTLLDNGASVNQCDSNGR----TLLANAAYSGSLDVVNLLVSRGADLEIEDA 576

Query: 239 STWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGAR 298
               P+ LA R GH +V+  L+  GAN+N   +DG TAL  A      +    LL  G +
Sbjct: 577 HGHTPLTLAARQGHTKVVNCLIGCGANINHTDQDGWTALRSAAWGGHTEVVSALLYAGVK 636

Query: 299 PDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDA 358
            D  +A D  T L   A  G+E +V  LLQ GA     +  G+TA   AA  GH  +   
Sbjct: 637 VDCADA-DSRTALRAAAWGGHEDIVLNLLQHGAEVNKADNEGRTALIAAAYMGHREI--- 692

Query: 359 LKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASF-----KGKIEVVRML 413
                             ++ L++ GA +N +D+ G TAL  A+      KG   VV +L
Sbjct: 693 ------------------VEHLLDHGAEVNHEDVDGRTALSVAALCVPASKGHASVVSLL 734

Query: 414 IDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
           ID+G +VD  D+DG T L  A   GH DV +LL++ GADV+   +   +P+  A  + +A
Sbjct: 735 IDRGAEVDHCDKDGMTPLLVAAYEGHVDVVDLLLEGGADVDHTDNNGRTPLLAAASMGHA 794

Query: 474 GISRILMHGGATKDGIQQTNLRQVSIQFGNGKV 506
            +   L+  GA  D I       +SI    G V
Sbjct: 795 SVVNTLLFWGAAVDSIDSEGRTVLSIASAQGNV 827

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	541
255090918	535	penetration and arbuscule morphogenesis	0.985	0.996	0.718	0.0
147832593	532	hypothetical protein VITISV_005666 [Viti	0.981	0.998	0.714	0.0
225439225	532	PREDICTED: ankyrin-2-like [Vitis vinifer	0.981	0.998	0.714	0.0
255569482	537	serine/threonine-protein kinase ripk4, p	0.990	0.998	0.738	0.0
261824308	541	hermes [Medicago truncatula] gi|28502072	0.990	0.990	0.668	0.0
356514054	538	PREDICTED: ankyrin-2-like [Glycine max]	0.983	0.988	0.641	0.0
356560367	516	PREDICTED: ankyrin-3-like [Glycine max]	0.950	0.996	0.633	0.0
356570327	527	PREDICTED: ankyrin-2-like [Glycine max]	0.972	0.998	0.640	0.0
449527507	531	PREDICTED: putative ankyrin repeat prote	0.970	0.988	0.639	0.0
449438004	531	PREDICTED: putative ankyrin repeat prote	0.970	0.988	0.634	0.0

>gi|255090918|gb|ACU00619.1| penetration and arbuscule morphogenesis protein [Petunia x hybrida]

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/543 (71%), Positives = 458/543 (84%), Gaps = 10/543 (1%)

Query: 1   MDRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIIS 60
           MDRL+SLEPSN+V IR+EPGQKCSG LTLRNVM+TMPVAFR+QP NK RY+++PQSGIIS
Sbjct: 1   MDRLLSLEPSNVVTIRLEPGQKCSGVLTLRNVMYTMPVAFRLQPLNKIRYSIRPQSGIIS 60

Query: 61  PLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTR 120
           PL T+++EI YHLPP + LPDSFPHCDDSFLLHSVV PGA  KD +STLD VPSDWFTT+
Sbjct: 61  PLTTITLEIIYHLPPNTTLPDSFPHCDDSFLLHSVVAPGATAKDTSSTLDMVPSDWFTTK 120

Query: 121 KKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIA 180
           +KQVFIDS IKIMFVGSPVL  LV+ G MD++REVLE+SD  W   DS + +GQTLLH+A
Sbjct: 121 RKQVFIDSAIKIMFVGSPVLCYLVRKGYMDEIREVLEKSDTTWKSVDSVNFEGQTLLHLA 180

Query: 181 IAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETST 240
           I+Q RPD+VQLLLEFGP++E+  R  CS+PLEAA+A GEALIVELLLA+KASTER+E S 
Sbjct: 181 ISQGRPDLVQLLLEFGPNIEAHSR-SCSSPLEAASATGEALIVELLLAKKASTERTEFSA 239

Query: 241 WGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPD 300
            GPIHLA   GHLEVLKLLL+KGANVN+LTKDGNTALHLAVE+RRRDCARLLLANGAR D
Sbjct: 240 SGPIHLAAGNGHLEVLKLLLLKGANVNSLTKDGNTALHLAVEERRRDCARLLLANGARAD 299

Query: 301 IRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
           I +  +GDTPLHI A LG E MV++LLQKGA KYIRNK GKTAYDVAAE GH++LFDAL+
Sbjct: 300 ICSTGNGDTPLHIAAGLGDEHMVRVLLQKGAEKYIRNKYGKTAYDVAAEHGHNKLFDALR 359

Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LGDSLCVAARKGEVRT+QRL+E GA+ING+D HGWTALHRA FKG+IEVV+ LID GIDV
Sbjct: 360 LGDSLCVAARKGEVRTVQRLLENGASINGRDQHGWTALHRACFKGRIEVVKALIDNGIDV 419

Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +A+DEDGYTALHCAVESGH DV ELLVKKGAD+E RTSK ++ +QIA+ LHY+G++R+LM
Sbjct: 420 NARDEDGYTALHCAVESGHVDVAELLVKKGADIELRTSKGITALQIAQSLHYSGLTRVLM 479

Query: 481 HGGATKD-GIQQTNLRQVSIQFGNGKVG-RDQMEGKFGMKKKKLPRPRVMRGSFDRSMPL 538
            GGATK+ G  +TN+ + S     GK+  RD   G   +KK+ + + R  R SFDR+ PL
Sbjct: 480 QGGATKEVGTMETNIVKSS-----GKIAVRDLDIGT--IKKRSVNKSRTRRSSFDRNAPL 532

Query: 539 AVL 541
           AVL
Sbjct: 533 AVL 535

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832593|emb|CAN63755.1| hypothetical protein VITISV_005666 [Vitis vinifera]

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/542 (71%), Positives = 454/542 (83%), Gaps = 11/542 (2%)

Query: 1   MDRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIIS 60
           MDRL+SLEPSNLVAIRIEPGQKC GEL LRNVM+TMPVAFR+QP NK RYTVKPQ  II+
Sbjct: 1   MDRLISLEPSNLVAIRIEPGQKCYGELILRNVMYTMPVAFRLQPMNKMRYTVKPQMAIIA 60

Query: 61  PLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTR 120
           PLATL+VEI+YHLPPGS+LP+SFPHCDDSFLLHS VVPGA +       +SVP+DWFTT+
Sbjct: 61  PLATLTVEISYHLPPGSLLPNSFPHCDDSFLLHSCVVPGAAV-------ESVPNDWFTTK 113

Query: 121 KKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIA 180
           KKQVFIDSGI+IMFVGSP+L  LV DG MD++REVLERSD AWN A+S D+ GQTLLH+A
Sbjct: 114 KKQVFIDSGIRIMFVGSPILAQLVVDGSMDEVREVLERSDSAWNGANSVDSHGQTLLHLA 173

Query: 181 IAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETST 240
           I Q R D+VQLLLEF PDVE+Q R G STPLEAAAA+GEALIVELLLA +ASTERS++ST
Sbjct: 174 ITQGRADLVQLLLEFEPDVEAQSRSG-STPLEAAAASGEALIVELLLAHRASTERSQSST 232

Query: 241 WGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPD 300
            GPIHLA RGGH+EVL+LLL+KGA+ +A+TKDGNTALHL+  +RRRDC+RLLLA+GAR D
Sbjct: 233 LGPIHLAARGGHMEVLRLLLLKGADADAITKDGNTALHLSAMERRRDCSRLLLASGARAD 292

Query: 301 IRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
           +RN ++GDTPLHI A LG E MVKLLLQKGANK IRN+SGKTAYDVAAE GH+RL+DAL 
Sbjct: 293 VRN-KNGDTPLHIAAGLGDEHMVKLLLQKGANKDIRNRSGKTAYDVAAEYGHTRLYDALS 351

Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LGD+LC AARKGEVRT+ +L+E GAAING+D HGWTALHRA+FKG++E V+ LI+KG+D+
Sbjct: 352 LGDNLCAAARKGEVRTIHKLLENGAAINGRDQHGWTALHRAAFKGRMEAVKALIEKGVDI 411

Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           DA++EDGYT LHCAVESGH DV ELLVKKGADVEART+K V+ +QIAE L+Y GI RIL 
Sbjct: 412 DAREEDGYTGLHCAVESGHVDVIELLVKKGADVEARTNKGVTALQIAESLNYLGIVRILS 471

Query: 481 HGGATKDGIQQTNLRQVSIQFGNGKVGRDQMEGKFGMKKKKLPRPRVMRGSFDR-SMPLA 539
           + GATK+G+ Q       I FGNG +G  +   + G   KK  R R +  SFDR S P+A
Sbjct: 472 NVGATKEGVAQVP-APAPIPFGNGMLGAXEAHDQLGYWPKKKNRSRAVHSSFDRSSTPMA 530

Query: 540 VL 541
           VL
Sbjct: 531 VL 532

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439225|ref|XP_002270888.1| PREDICTED: ankyrin-2-like [Vitis vinifera]

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/542 (71%), Positives = 454/542 (83%), Gaps = 11/542 (2%)

Query: 1   MDRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIIS 60
           MDRL+SLEPSNLVAIRIEPGQKC GEL LRNVM+TMPVAFR+QP NK RYTVKPQ  II+
Sbjct: 1   MDRLISLEPSNLVAIRIEPGQKCYGELILRNVMYTMPVAFRLQPMNKMRYTVKPQMAIIA 60

Query: 61  PLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTR 120
           PLATL+VEI+YHLPPGS+LP+SFPHCDDSFLLHS VVPGA +       +SVP+DWFTT+
Sbjct: 61  PLATLTVEISYHLPPGSLLPNSFPHCDDSFLLHSCVVPGAAV-------ESVPNDWFTTK 113

Query: 121 KKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIA 180
           KKQVFIDSGI+IMFVGSP+L  LV DG MD++REVLERSD AWN A+S D+ GQTLLH+A
Sbjct: 114 KKQVFIDSGIRIMFVGSPILAQLVVDGSMDEVREVLERSDSAWNGANSVDSHGQTLLHLA 173

Query: 181 IAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETST 240
           I Q R D+VQLLLEF PDVE+Q R G STPLEAAAA+GEALIVELLLA +ASTERS++ST
Sbjct: 174 ITQGRADLVQLLLEFEPDVEAQSRSG-STPLEAAAASGEALIVELLLAHRASTERSQSST 232

Query: 241 WGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPD 300
            GPIHLA RGGH+EVL+LLL+KGA+ +A+TKDGNTALHL+  +RRRDC+RLLLA+GAR D
Sbjct: 233 LGPIHLAARGGHMEVLRLLLLKGADADAITKDGNTALHLSAMERRRDCSRLLLASGARAD 292

Query: 301 IRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
           +RN ++GDTPLHI A LG E MVKLLLQKGANK IRN+SGKTAYDVAAE GH+RL+DAL 
Sbjct: 293 VRN-KNGDTPLHIAAGLGDEHMVKLLLQKGANKDIRNRSGKTAYDVAAEYGHTRLYDALS 351

Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LGD+LC AARKGEVRT+ +L+E GAAING+D HGWTALHRA+FKG++E V+ LI+KG+D+
Sbjct: 352 LGDNLCAAARKGEVRTIHKLLENGAAINGRDQHGWTALHRAAFKGRMEAVKALIEKGVDI 411

Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           DA++EDGYT LHCAVESGH DV ELLVKKGADVEART+K V+ +QIAE L+Y GI RIL 
Sbjct: 412 DAREEDGYTGLHCAVESGHVDVIELLVKKGADVEARTNKGVTALQIAESLNYLGIVRILS 471

Query: 481 HGGATKDGIQQTNLRQVSIQFGNGKVGRDQMEGKFGMKKKKLPRPRVMRGSFDR-SMPLA 539
           + GATK+G+ Q       I FGNG +G  +   + G   KK  R R +  SFDR S P+A
Sbjct: 472 NVGATKEGVAQVPA-PAPIPFGNGMLGAREAHDQLGYWPKKKNRSRAVHSSFDRSSTPMA 530

Query: 540 VL 541
           VL
Sbjct: 531 VL 532

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569482|ref|XP_002525708.1| serine/threonine-protein kinase ripk4, putative [Ricinus communis] gi|223535008|gb|EEF36691.1| serine/threonine-protein kinase ripk4, putative [Ricinus communis]

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/542 (73%), Positives = 450/542 (83%), Gaps = 6/542 (1%)

Query: 1   MDRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIIS 60
           MDRL+SL+PSNLVAIRIEPGQKC GELTLRNVM+TMPVAFRIQ  NK RYT+KPQSGIIS
Sbjct: 1   MDRLISLDPSNLVAIRIEPGQKCYGELTLRNVMYTMPVAFRIQALNKTRYTIKPQSGIIS 60

Query: 61  PLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTR 120
           PLATL++EI YHL   S LP++FP C+D+FLLHSVVVPGA IK  TS  D VP DWFT R
Sbjct: 61  PLATLTIEITYHLLHTSFLPETFPFCEDTFLLHSVVVPGASIKHPTSNFDVVPQDWFTAR 120

Query: 121 KKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIA 180
           KKQVFIDSGIK+MFVGSP+L  LV DG MD++REVLERSDP+WN ADS D+ G TLLHIA
Sbjct: 121 KKQVFIDSGIKVMFVGSPILAQLVADGSMDEIREVLERSDPSWNSADSVDSNGHTLLHIA 180

Query: 181 IAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETST 240
           IAQ RPDIVQLLLEF P VE Q R GCS PLEAAAAAGEALIVELLLA +AS ERSE+ST
Sbjct: 181 IAQGRPDIVQLLLEFKPKVELQSRSGCS-PLEAAAAAGEALIVELLLANRASPERSESST 239

Query: 241 WGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPD 300
           WGP+HLA   GHLEVL+LLL+KGA+V+A+ K G TALH+AVE+RRRDCARLLLA+GA+ D
Sbjct: 240 WGPLHLAASNGHLEVLRLLLLKGADVDAVAKGGFTALHMAVEERRRDCARLLLASGAKAD 299

Query: 301 IRNARDGDTPLHITASLGYEQMVKLLLQK-GANKYIRNKSGKTAYDVAAECGHSRLFDAL 359
           IR+A +GDTPLHI A LG E MV+LLLQK GANK IRNK+GK AYDVAAE GHSRLFDAL
Sbjct: 300 IRDASEGDTPLHIAARLGDENMVRLLLQKGGANKDIRNKNGKIAYDVAAEYGHSRLFDAL 359

Query: 360 KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGID 419
           KLGDSLC+AARKG+VRT+ +LIE GAAING+D HGWTALHRA+FKG +EVVR LIDKGID
Sbjct: 360 KLGDSLCIAARKGDVRTILKLIENGAAINGRDQHGWTALHRAAFKGNVEVVRTLIDKGID 419

Query: 420 VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
           VDAKDEDGYTALHC VESGH DV ELLVKKGAD+EART+K V+ +QIAE LHY GISR+L
Sbjct: 420 VDAKDEDGYTALHCTVESGHVDVIELLVKKGADIEARTNKGVTALQIAESLHYVGISRVL 479

Query: 480 MHGGATKDGIQQTNLRQVSIQFGNGKVGRDQMEGKFGMKKKKLPRPRVMRGSFDRSMPLA 539
           +  GA KD I Q       + FG G  G +  +      KK+ PR R +RGSFDRS PLA
Sbjct: 480 IRSGAAKDVIMQLAAPVHQLPFGKGAAGTEAEK----TVKKRQPRARPLRGSFDRSTPLA 535

Query: 540 VL 541
           VL
Sbjct: 536 VL 537

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|261824308|gb|ACX94227.1| hermes [Medicago truncatula] gi|285020720|gb|ADC33495.1| vapyrin [Medicago truncatula]

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/546 (66%), Positives = 445/546 (81%), Gaps = 10/546 (1%)

Query: 1   MDRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIIS 60
           MDRL+ L+PSN+V IR+E GQKC G++TL NVM+TMPVAFRIQP  K RYT+KPQSGIIS
Sbjct: 1   MDRLIKLDPSNIVLIRVEEGQKCLGKITLNNVMYTMPVAFRIQPLIKTRYTIKPQSGIIS 60

Query: 61  PLATLSVEIAYHLPP---GSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWF 117
           PLA+L +EI YH P     + LP SFP  DDSFLLHSV+ PGA IK+ +S  DSVPSDWF
Sbjct: 61  PLASLVIEITYHPPQQQGSNNLPHSFPFSDDSFLLHSVLAPGAAIKEPSSMFDSVPSDWF 120

Query: 118 TTRKKQVFIDSGIKIMFVGSPVLVLLVKDGE-MDDLREVLERSDPAWNPADSADAQGQTL 176
           TT+KKQVFIDS IK+MFVGS +L  LV+DG  MDD+REVLE+SDP W   +S D+QGQTL
Sbjct: 121 TTKKKQVFIDSAIKVMFVGSQILTQLVEDGNSMDDIREVLEKSDPLWESVNSKDSQGQTL 180

Query: 177 LHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERS 236
           LH+AI++ RPD+VQL+LEF PD+E+    G STPLEAA+++GE+LIVELLLA KA+TE S
Sbjct: 181 LHLAISKTRPDLVQLILEFKPDIEAINSVG-STPLEAASSSGESLIVELLLAHKANTEGS 239

Query: 237 ETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANG 296
           E+S + PIH A R GH+E+L+LLL+KGA V++LTKDGNT+LHLAVE++RRDCARLLLANG
Sbjct: 240 ESSVFRPIHHASREGHMEILRLLLLKGARVDSLTKDGNTSLHLAVEEKRRDCARLLLANG 299

Query: 297 ARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLF 356
           AR D+RN R+GDTPLHI A+ G E MVKLLL KGA KY+RNK GKTA+DVAAE GHSRLF
Sbjct: 300 ARTDVRNMREGDTPLHIAAANGDENMVKLLLHKGATKYVRNKLGKTAFDVAAENGHSRLF 359

Query: 357 DALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDK 416
           DAL+LGD+LC AARKGEVRT+Q+++E+G  ING+D +GWT+LHRA+FKG+++ VR L++K
Sbjct: 360 DALRLGDNLCAAARKGEVRTIQKVLESGGVINGRDQNGWTSLHRAAFKGRMDAVRFLVEK 419

Query: 417 GIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGIS 476
           GID+DAKDEDGYTALHCA ESGH DVTE LVKKGADVEART+K VS +QI E L+Y GI+
Sbjct: 420 GIDLDAKDEDGYTALHCAAESGHADVTEFLVKKGADVEARTNKGVSALQIVESLNYVGIT 479

Query: 477 RILMHGGATKDGIQQTNLRQVS-IQFGNGKVGRDQMEGKFGMKKKKLPRPRVMRGSFDRS 535
           RIL++GGA+++G+ +      S I FG  KV    +     MKKK   R R +RGSFD S
Sbjct: 480 RILVNGGASREGLGEKPPSAPSKIPFGR-KVESGSV---MTMKKKMSSRTRALRGSFDHS 535

Query: 536 MPLAVL 541
           MPLAVL
Sbjct: 536 MPLAVL 541

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514054|ref|XP_003525722.1| PREDICTED: ankyrin-2-like [Glycine max]

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/547 (64%), Positives = 434/547 (79%), Gaps = 15/547 (2%)

Query: 1   MDRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIIS 60
           MDRL+ L+PSN V IR+EPGQKC G +TL NVM+TMPVAFR+QP  K RYTVKPQSGIIS
Sbjct: 1   MDRLIRLDPSNTVLIRVEPGQKCHGRITLHNVMYTMPVAFRLQPLIKTRYTVKPQSGIIS 60

Query: 61  PLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTR 120
           PLATL+++I YHLP GS LP SFPH +DSFLLHSV+VPGA IK+ +S  D+VPSD F  +
Sbjct: 61  PLATLTIDITYHLPQGSSLPHSFPHSNDSFLLHSVLVPGAAIKEPSSMFDAVPSDLF--K 118

Query: 121 KKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIA 180
           KKQVFIDS I++MFVG  +L  LV  G  D++REVLE+SDP+W   +S D QGQTLLH+A
Sbjct: 119 KKQVFIDSAIRVMFVGPHILARLVTQGATDEIREVLEKSDPSWRNVNSTDPQGQTLLHLA 178

Query: 181 IAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETST 240
           I+Q R D+VQLLLEF  DVE+  R G STPLEAA++  EALIVELLLA KA+TERSE S 
Sbjct: 179 ISQGRADLVQLLLEFEADVEALNRSG-STPLEAASSCNEALIVELLLAHKANTERSELSM 237

Query: 241 WGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPD 300
           +GPIH A RGGH+EV++LLL+KGA V++L KDGNTALH+AVE+  +DC RLLLANGAR D
Sbjct: 238 FGPIHHAARGGHVEVMRLLLLKGAKVDSLAKDGNTALHVAVEEHTKDCVRLLLANGARTD 297

Query: 301 IRNARDGDTPLHITASLGYEQMVKLLLQKG-ANKYIRNKSGKTAYDVAAECGHSRLFDAL 359
            +N R+GDTPLH+ +++G E MVKLLLQKG ANK +RN+ G+TAYD+A E GH+ L+DAL
Sbjct: 298 AKNTREGDTPLHVASAIGDESMVKLLLQKGGANKDVRNRQGRTAYDIAVENGHAHLYDAL 357

Query: 360 KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGID 419
            LGD LCVAARKGEVR++ +L+E GA ING+D +GWT+LHRASFKG+I+ V++L++KG +
Sbjct: 358 CLGDKLCVAARKGEVRSIHKLLENGAGINGRDQNGWTSLHRASFKGRIDTVKLLVEKGAE 417

Query: 420 VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
           VDAKDE+GYTALHCA ESGH DVTE LVK+GADVEART K VS +QIAE LHY GI+R+L
Sbjct: 418 VDAKDEEGYTALHCAAESGHADVTEFLVKRGADVEARTRKGVSALQIAESLHYVGITRVL 477

Query: 480 MHGGATKDGIQQTNLRQV-SIQFGNGKVGRDQMEGKFGMKKKKL---PRPRVMRG-SFDR 534
           ++GGA+++      +  + +I FG       +ME +  M KKK     R R++ G SFDR
Sbjct: 478 VNGGASRENCDVGKVAALGAIAFGT------KMEARGVMNKKKRGGGGRARMLNGASFDR 531

Query: 535 SMPLAVL 541
           SM LAVL
Sbjct: 532 SMALAVL 538

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560367|ref|XP_003548464.1| PREDICTED: ankyrin-3-like [Glycine max]

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/543 (63%), Positives = 423/543 (77%), Gaps = 29/543 (5%)

Query: 1   MDRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIIS 60
           MDRL+ ++P+N V IR+EPGQKC G++TLRNVM+TMPVAFR+QP  K RYTVKPQSGIIS
Sbjct: 1   MDRLIKVDPTNTVTIRMEPGQKCHGQITLRNVMYTMPVAFRLQPLIKTRYTVKPQSGIIS 60

Query: 61  PLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTR 120
           PLAT+++EI Y+LP GS LP SFP  +DSFL+HSVVVPGA +K+ +S  +SVPSDWFTT+
Sbjct: 61  PLATVTIEILYNLPQGSTLPHSFPQSEDSFLIHSVVVPGATVKEPSSMFESVPSDWFTTK 120

Query: 121 KKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPA-DSADAQGQTLLHI 179
           KKQVFIDSGIKI+FVGS +L  LV DG +D++R+VLE S+  W  A DS D  G TLLH+
Sbjct: 121 KKQVFIDSGIKIIFVGSLILAQLVHDGSIDEIRQVLEHSEHTWKKAVDSVDQNGDTLLHV 180

Query: 180 AIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETS 239
           AI++RRPD+VQLLLEF  DVES+ R G  T LE+A ++GE LIVELLLA KA+TER+E+S
Sbjct: 181 AISKRRPDLVQLLLEFNADVESKNRSG-ETALESACSSGEELIVELLLAHKANTERTESS 239

Query: 240 TWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARP 299
           + G IHL+ R GH+EVL+LLL+KGA V++LTKDG TALHLAV +  RDC RLLLAN  R 
Sbjct: 240 SLGAIHLSAREGHVEVLRLLLMKGARVDSLTKDGYTALHLAVREGLRDCVRLLLANEGRT 299

Query: 300 DIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL 359
           DIR++RDGDT LH+ A +G E MVKLLL KGANK +RN  G+TAYDVA E G + +FDAL
Sbjct: 300 DIRDSRDGDTCLHVAAGVGDESMVKLLLNKGANKEVRNFKGETAYDVAVEKGKASVFDAL 359

Query: 360 KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVR-MLIDKGI 418
           +LGD LCVAARKGEVR+++RLIE GAA++G+D HGWTALHRA FKG++E VR +L+++G+
Sbjct: 360 RLGDGLCVAARKGEVRSIKRLIEGGAAVDGRDQHGWTALHRACFKGRVEAVRALLLERGV 419

Query: 419 DVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRI 478
           +VDA+DE+GYTALHCAVE+GH DV E+LVK+G DVEARTSK VS +QIAE L Y GI+R+
Sbjct: 420 EVDARDEEGYTALHCAVEAGHGDVAEVLVKRGVDVEARTSKGVSALQIAEALGYGGIARV 479

Query: 479 LMHGGATKDGIQQTNLRQVSIQFGNGKVGRDQMEGKFGMKKKKLPRPRVMRGSFDRSMPL 538
           L+ G A                   G V         GMKK    R R +R SFDRSMPL
Sbjct: 480 LVGGAA-------------------GHVAE-------GMKKVARRREREIRASFDRSMPL 513

Query: 539 AVL 541
           AVL
Sbjct: 514 AVL 516

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570327|ref|XP_003553341.1| PREDICTED: ankyrin-2-like [Glycine max]

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/542 (64%), Positives = 432/542 (79%), Gaps = 16/542 (2%)

Query: 1   MDRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIIS 60
           MDRL+ ++P+N V IRIEPGQKC G++TLRNVM+TMPVAFR+Q   K RYT+KPQSGIIS
Sbjct: 1   MDRLIKVDPTNTVPIRIEPGQKCHGQITLRNVMYTMPVAFRLQSLIKTRYTLKPQSGIIS 60

Query: 61  PLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTR 120
           PL+T+++EI Y+LP GS LP SFPH +DSFLLHSVVVPGA +K+ +S  +SVPSDWFT +
Sbjct: 61  PLSTVTIEILYNLPLGSTLPHSFPHSEDSFLLHSVVVPGATVKEPSSMFESVPSDWFTAK 120

Query: 121 KKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIA 180
           KKQVFIDSGIKI+FVGS +L  LV +G +D++REVLE S+  W   DS D  G TLLH+A
Sbjct: 121 KKQVFIDSGIKIIFVGSLILAQLVHNGSIDEIREVLEHSEHTWKAVDSVDQNGDTLLHVA 180

Query: 181 IAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETST 240
           I++ RPDIVQLLLEF  DVES+ R G  TPLE+A A+GE LIVELLLA KA+TER+E+S+
Sbjct: 181 ISKSRPDIVQLLLEFNADVESKNRTG-ETPLESACASGEELIVELLLAHKANTERTESSS 239

Query: 241 WGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPD 300
            G IHL+ R G  EVL+LLL+KGA+V++LTKDG TALHLAV +  RDCARLLLAN AR D
Sbjct: 240 LGAIHLSAREGRREVLRLLLLKGASVDSLTKDGYTALHLAVREGSRDCARLLLANNARTD 299

Query: 301 IRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
           IR++RDGDT LH+ A +G E MVKLLL KGANK +RN +GKTAYDVAAE GH+R+FDAL+
Sbjct: 300 IRDSRDGDTCLHVAAGVGDESMVKLLLNKGANKDVRNFNGKTAYDVAAEKGHARVFDALR 359

Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LGD LCVAARKGEVR++QRLIE GA ++G+D HGWTALHRA FKG++E VR L+++GIDV
Sbjct: 360 LGDGLCVAARKGEVRSIQRLIEGGAVVDGRDQHGWTALHRACFKGRVEAVRALLERGIDV 419

Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL- 479
           +A+DEDGYTALHCAVE+GH DV E+LVK+G DVEART+K V+ +QIAE L Y GI+R+L 
Sbjct: 420 EARDEDGYTALHCAVEAGHADVAEVLVKRGVDVEARTNKGVTALQIAEALGYGGIARLLG 479

Query: 480 MHGGATKDGIQQTNLRQVSIQFGNGKVGRDQMEGKFGMKKKKLPRPRVMRGSFDRSMPLA 539
              G   +G QQ+ L ++          + + + K G ++++    R +RGSFDRSMPL 
Sbjct: 480 AAAGHVAEGEQQSVLGEM----------KKEKKNKLGRRRRE----REIRGSFDRSMPLP 525

Query: 540 VL 541
           VL
Sbjct: 526 VL 527

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527507|ref|XP_004170752.1| PREDICTED: putative ankyrin repeat protein RF_0381-like [Cucumis sativus]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/547 (63%), Positives = 424/547 (77%), Gaps = 22/547 (4%)

Query: 1   MDRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIIS 60
           MDRL++LEPSNL+ IRIEP  KCSG+LTLRNVM+TMPVAFR+QP  K+RYT KPQSGII 
Sbjct: 1   MDRLITLEPSNLIPIRIEPPHKCSGDLTLRNVMYTMPVAFRLQPLIKSRYTFKPQSGIIP 60

Query: 61  PLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTR 120
           PL+TL+VEI YHLP G  LPDS+P+ DDSFLLHSVVVPGA IKD++S+ DSVPSDWFTTR
Sbjct: 61  PLSTLTVEILYHLPHGVSLPDSYPYSDDSFLLHSVVVPGAAIKDSSSSFDSVPSDWFTTR 120

Query: 121 KKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIA 180
           KKQVFIDSGIK+MFVGS VL  LV DG MD++REVLERSDP+W   DS D +G+TLLH+A
Sbjct: 121 KKQVFIDSGIKVMFVGSSVLARLVADGAMDEIREVLERSDPSWRAVDSVDEKGRTLLHLA 180

Query: 181 IAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETST 240
           I Q R D+VQLLLEF PDV   G  G  T +EAAA AG+ALIVELLLARKASTER E S 
Sbjct: 181 IGQGRADLVQLLLEFNPDVGKVGESGM-TAVEAAAGAGQALIVELLLARKASTERGEGSV 239

Query: 241 WGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPD 300
           +G IHLA  GGH+EVL+LLL+KGA V+AL+K G+TALHLAV++RRRDCARLLLANGA+PD
Sbjct: 240 FGAIHLAAAGGHVEVLRLLLVKGACVDALSKSGDTALHLAVQERRRDCARLLLANGAKPD 299

Query: 301 IRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
           +R+A  GDT LH+ A +G EQ+VKLL+QKGANK IRN  GK  YDVA +  H+RLFD L+
Sbjct: 300 VRSAEQGDTALHMAARIGDEQIVKLLIQKGANKDIRNWVGKRPYDVAFDHSHTRLFDVLR 359

Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           L D L  AARKG+VR++Q L+++GAAIN +D +GWTALHRA+FKG  +  R LID GIDV
Sbjct: 360 LADKLATAARKGDVRSIQLLVDSGAAINSRDQNGWTALHRAAFKGHTDASRALIDIGIDV 419

Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +AKD+DGYTALHCAVE+ H +V ++LV++GADVEA T+K +S MQIA+ + Y    RILM
Sbjct: 420 NAKDDDGYTALHCAVEAAHDNVVQVLVERGADVEAVTNKGLSAMQIAQSMQYTRTMRILM 479

Query: 481 HGGATKDGIQQTNLRQVSIQFGNGKVGRDQMEGKFGMKKKKLP-----RPRVMRGS-FDR 534
           HGG +KD I     R  S Q               G+ KKK       R R ++ + FD+
Sbjct: 480 HGGVSKDHIDVPPTRTTSWQ---------------GLAKKKQQSKGRGRIRSLKSTDFDK 524

Query: 535 SMPLAVL 541
           S+ L+V+
Sbjct: 525 SVALSVV 531

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438004|ref|XP_004136780.1| PREDICTED: putative ankyrin repeat protein RF_0381-like [Cucumis sativus]

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/547 (63%), Positives = 423/547 (77%), Gaps = 22/547 (4%)

Query: 1   MDRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIIS 60
           MDRL++LEPSNL+ IRI+P  KCSG+LTLRNVM+TMPVAFR+QP  K+RYT KPQSGII 
Sbjct: 1   MDRLITLEPSNLIPIRIDPPHKCSGDLTLRNVMYTMPVAFRLQPLIKSRYTFKPQSGIIP 60

Query: 61  PLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTR 120
           PL+TL+VEI YHLP G  LPDS+P+ DDSFLLHSVVVPGA IKD++S+ DSVPSDWFTTR
Sbjct: 61  PLSTLTVEILYHLPHGVSLPDSYPYSDDSFLLHSVVVPGAAIKDSSSSFDSVPSDWFTTR 120

Query: 121 KKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIA 180
           KKQVFIDSGIK+MFVGS VL  LV DG MD++REVLERSDP+W   DS D +G+TLLH+A
Sbjct: 121 KKQVFIDSGIKVMFVGSAVLARLVADGAMDEIREVLERSDPSWRAVDSVDEKGRTLLHLA 180

Query: 181 IAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETST 240
           I Q R D+VQLLLEF PDV   G  G  T +EAAA AG+ALIVELLLARKASTER E S 
Sbjct: 181 IGQGRADLVQLLLEFNPDVGKVGESGM-TAVEAAAGAGQALIVELLLARKASTERGEGSV 239

Query: 241 WGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPD 300
           +G IHLA  GGH+EVL+LLL+KGA V+AL+K G+TALHLAV++RRRDCARLLLANG++PD
Sbjct: 240 FGAIHLAAAGGHVEVLRLLLVKGACVDALSKSGDTALHLAVQERRRDCARLLLANGSKPD 299

Query: 301 IRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
           +R+A  GDT LH+ A +G EQ+VKLL+QKGANK IRN  GK  YDVA +  H+RLFD L+
Sbjct: 300 VRSAEQGDTALHMAARIGDEQIVKLLIQKGANKDIRNWVGKRPYDVAFDHSHTRLFDVLR 359

Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           L D L  AARKG+VR++Q L+++GAAIN +D +GWTALHRA+FKG  +  R LID GIDV
Sbjct: 360 LADKLATAARKGDVRSIQLLVDSGAAINSRDQNGWTALHRAAFKGHTDASRALIDIGIDV 419

Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +AKD+DGYTALHCAVE+ H +V ++LV++GADVEA T+K +S MQIA+ + Y    RILM
Sbjct: 420 NAKDDDGYTALHCAVEAAHDNVVQVLVERGADVEAVTNKGLSAMQIAQSMQYTRTMRILM 479

Query: 481 HGGATKDGIQQTNLRQVSIQFGNGKVGRDQMEGKFGMKKKKLP-----RPRVMRGS-FDR 534
           H G +KD I     R  S Q               G+ KKK       R + +R + FD+
Sbjct: 480 HSGVSKDHIDVPPTRTTSWQ---------------GLAKKKQQSKGRGRIKSLRSTDFDK 524

Query: 535 SMPLAVL 541
           S+ L+V+
Sbjct: 525 SVALSVV 531

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	541
ZFIN|ZDB-GENE-091113-6	1923	si:ch211-263m18.3 "si:ch211-26	0.648	0.182	0.311	2.9e-32
ASPGD|ASPL0000062824	1030	AN1130 [Emericella nidulans (t	0.591	0.310	0.296	4.4e-28
MGI|MGI:88026	1961	Ank3 "ankyrin 3, epithelial" [	0.609	0.168	0.286	5.1e-28
UNIPROTKB|F1NJ80	1699	ANK3 "Uncharacterized protein"	0.589	0.187	0.278	5.6e-28
UNIPROTKB|F1NNX8	1737	ANK3 "Uncharacterized protein"	0.589	0.183	0.278	5.8e-28
UNIPROTKB|F1NNX6	1824	ANK3 "Uncharacterized protein"	0.589	0.174	0.278	6.2e-28
UNIPROTKB|F1NNX7	1915	ANK3 "Uncharacterized protein"	0.589	0.166	0.278	6.6e-28
ZFIN|ZDB-GENE-081104-19	1929	si:ch211-173b16.3 "si:ch211-17	0.646	0.181	0.298	6.7e-28
UNIPROTKB|F1PJ90	1782	ANK3 "Uncharacterized protein"	0.609	0.185	0.283	7.9e-28
UNIPROTKB|K7GLA8	1847	ANK3 "Uncharacterized protein"	0.609	0.178	0.283	8.3e-28

ZFIN|ZDB-GENE-091113-6 si:ch211-263m18.3 "si:ch211-263m18.3" [Danio rerio (taxid:7955)]

 Score = 374 (136.7 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 116/372 (31%), Positives = 172/372 (46%)

Query:   150 DDLRE--VLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGC 207
             DD R   VL ++DP  NP D     G T LHIA       + QLLL  G +V    + G 
Sbjct:   217 DDTRTAAVLLQNDP--NP-DVLSKTGFTPLHIAAHYENLSVAQLLLNRGANVNFTPKNGI 273

Query:   208 STPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVN 267
              TP                  R A  +        P+H A R GH+ V+++LL +GA + 
Sbjct:   274 -TPLHIASRRGNVIMVRLLLDRGAQIDAKTKDELTPLHCAARNGHVRVVEILLDQGAPLQ 332

Query:   268 ALTKDGNTALHLAVEXXXXX-XXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLL 326
             A TK+G + +H+A +             N    DI    D  TPLH+ A  G+ +MVK+L
Sbjct:   333 AKTKNGLSPIHMAAQGDHMDCVRQLLQYNAEIDDI--TLDHLTPLHVAAHCGHHRMVKVL 390

Query:   327 LQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL-KLGDSL-----------CVAARKGEV 374
             L KGA    R  +G T   +A +  H R  D L K   SL            VAA  G +
Sbjct:   391 LDKGAKANARALNGFTPLHIACKKNHMRSMDLLLKHSASLEAVTESGLTPLHVAAFMGHL 450

Query:   375 RTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCA 434
               ++ L++ GA+ N  ++   T LH A+  G  EV + L+     VDAK +D  T LHCA
Sbjct:   451 NIVKSLLQRGASPNASNVKVETPLHMAARAGHCEVAQFLLQNNAQVDAKAKDDQTPLHCA 510

Query:   435 VESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNL 494
                GH ++ +LL++  A+ ++ T+   +P+ IA    +A  +RIL+   A +  + +   
Sbjct:   511 ARMGHKELVKLLMEHKANPDSATTAGHTPLHIAAREGHAQTTRILLDENAQQTKMTKKGF 570

Query:   495 RQVSIQFGNGKV 506
               + +    GKV
Sbjct:   571 TPLHVACKYGKV 582

GO:0007165 "signal transduction" evidence=IEA

ASPGD|ASPL0000062824 AN1130 [Emericella nidulans (taxid:162425)]

 Score = 341 (125.1 bits), Expect = 4.4e-28, P = 4.4e-28
 Identities = 99/334 (29%), Positives = 145/334 (43%)

Query:   166 ADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXX 225
             ADS    GQT L  A       +V+L LE G   + +   G  TP               
Sbjct:   699 ADSKANWGQTPLSRAAFDGHESVVRLFLEHGAQADCKDGDG-GTPLSSAAATGHESVVRL 757

Query:   226 XXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXX 285
                  A  +  +     P+  A   G+  V+KLLL  GA  ++   D  T L  A     
Sbjct:   758 LLKHGAQADSKDDDCRTPLSYAASNGYESVVKLLLEHGARADSKDDDFRTPLSYAASYGY 817

Query:   286 XXXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYD 345
                      +GAR D ++ +D  TPL   AS GYE +V++LL+ GA    R+K   T   
Sbjct:   818 ESVVKLLLEHGARTDSKD-KDSQTPLSYAASRGYESVVRILLENGARANSRDKDSHTPLS 876

Query:   346 VAAECGHSRLFDAL-KLG---DS--------LCVAARKGEVRTMQRLIEAGAAINGKDLH 393
              AA  GH  +   L + G   DS        L  AA  G    ++ L++ GA    KD +
Sbjct:   877 YAASKGHESVVRLLLQYGAQADSETSSGQTPLSYAASHGHEFVVKLLLDHGAQTESKDKY 936

Query:   394 GWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADV 453
             GWT L  A+  G+   VR+L++ G + + KD + +T L  A   GH  V  LL+  GA  
Sbjct:   937 GWTPLVYAAIWGQESAVRLLLEHGAEAELKDNESWTPLSYAALKGHESVVRLLLDHGAQA 996

Query:   454 EARTSKNVSPMQIAECLHYAGISRILMHGGATKD 487
             +++     +P+  A    Y  + R+L+  GA +D
Sbjct:   997 DSKHGNGRTPLSDAASRGYDSVVRLLLEHGARED 1030

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:88026 Ank3 "ankyrin 3, epithelial" [Mus musculus (taxid:10090)]

 Score = 344 (126.2 bits), Expect = 5.1e-28, P = 5.1e-28
 Identities = 99/346 (28%), Positives = 160/346 (46%)

Query:   175 TLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTE 234
             T LH+A  +   ++V+LLL+ G  ++++ R G  TP                  R A   
Sbjct:   253 TPLHVASKRGNANMVKLLLDRGAKIDAKTRDGL-TPLHCGARSGHEQVVEMLLDRSAPIL 311

Query:   235 RSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXX 294
                 +   P+H+A +G HL  ++LLL     V+ +T D  TALH+A              
Sbjct:   312 SKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAAHCGHYKVAKVLLD 371

Query:   295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
               A P+ + A +G TPLHI       ++++LLL+ GA+     +SG T   VAA  GH  
Sbjct:   372 KKASPNAK-ALNGFTPLHIACKKNRIRVMELLLKHGASIQAVTESGLTPIHVAAFMGHVN 430

Query:   355 LFDALK-----------LGDS-LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRAS 402
             +   L             G++ L +AAR G+   ++ L++ GA +  K     T LH ++
Sbjct:   431 IVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISA 490

Query:   403 FKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVS 462
               GK ++V+ L+ +G   +A    GYT LH A   GH DV   L+  GA +   T K  +
Sbjct:   491 RLGKADIVQQLLQQGASPNAATTSGYTPLHLAAREGHEDVAAFLLDHGASLSITTKKGFT 550

Query:   463 PMQIAECLHYAGISRILMHGGATKDGIQQTNLR--QVSIQFGNGKV 506
             P+ +A       ++ +L+   A+ D   ++ L    V+  + N KV
Sbjct:   551 PLHVAAKYGKLEVASLLLQKSASPDAAGKSGLTPLHVAAHYDNQKV 596

GO:0000281 "cytokinesis after mitosis" evidence=ISO

GO:0005200 "structural constituent of cytoskeleton" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0007009 "plasma membrane organization" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0007409 "axonogenesis" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0010650 "positive regulation of cell communication by electrical coupling" evidence=ISO

GO:0014704 "intercalated disc" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IDA

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0016328 "lateral plasma membrane" evidence=ISO

GO:0016529 "sarcoplasmic reticulum" evidence=ISO

GO:0019228 "regulation of action potential in neuron" evidence=IMP

GO:0030018 "Z disc" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030425 "dendrite" evidence=ISO

GO:0031594 "neuromuscular junction" evidence=ISO

GO:0033268 "node of Ranvier" evidence=ISO;IDA

GO:0033270 "paranode region of axon" evidence=IDA

GO:0034112 "positive regulation of homotypic cell-cell adhesion" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0043001 "Golgi to plasma membrane protein transport" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043194 "axon initial segment" evidence=ISO;IDA

GO:0045184 "establishment of protein localization" evidence=ISO

GO:0045202 "synapse" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=ISO

GO:0045760 "positive regulation of action potential" evidence=TAS

GO:0050808 "synapse organization" evidence=IMP

GO:0071709 "membrane assembly" evidence=ISO

GO:0072659 "protein localization to plasma membrane" evidence=ISO;IDA;IMP

GO:0072660 "maintenance of protein location in plasma membrane" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO;IMP

GO:0090314 "positive regulation of protein targeting to membrane" evidence=ISO

UNIPROTKB|F1NJ80 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 343 (125.8 bits), Expect = 5.6e-28, P = 5.6e-28
 Identities = 93/334 (27%), Positives = 163/334 (48%)

Query:   167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXX 226
             ++ + +G+T LH+A    + ++V+ L++ G  VE++ +    TP                
Sbjct:   418 NTTNVRGETALHMAARAGQTEVVRYLVQNGAQVEAKAKDD-QTPLHISARLGKADIVQQL 476

Query:   227 XXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXX 286
               + AS   + TS + P+HL+ R GH +V  +LL  GA++  +TK G T LH+A +    
Sbjct:   477 LQQGASPNAATTSGYTPLHLSAREGHEDVASVLLEHGASLAIITKKGFTPLHVAAKYGKI 536

Query:   287 XXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
                       A PD  + + G TPLH+ A    +++  LLL +GA+ +   K+G T   +
Sbjct:   537 EVANLLLQKNASPDA-SGKSGLTPLHVAAHYDNQKVALLLLDQGASPHASAKNGYTPLHI 595

Query:   347 AAECGHSRLFDAL-KLG-DSLCV----------AARKGEVRTMQRLIEAGAAINGKDLHG 394
             AA+     +   L + G D+  V          A++ G V  +  L+   A +N  +  G
Sbjct:   596 AAKKNQMDIATTLLEYGADANAVTRQGIAPVHLASQDGHVDMVSLLLTRNANVNLSNKSG 655

Query:   395 WTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVE 454
              T LH A+ + ++ V  +L+++G  VDA+ + GYT LH     G+  +   L++  A + 
Sbjct:   656 LTPLHLAAQEDRVNVAEVLVNQGAAVDAQTKMGYTPLHVGCHYGNIKIVNFLLQHSAKIN 715

Query:   455 ARTSKNVSPM-QIAECLHYAGISRILMHGGATKD 487
             A+T    +P+ Q A+  H   I+ +L HG A  +
Sbjct:   716 AKTKNGYTPLHQAAQQGHTHIINVLLQHGAAPNE 749

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX8 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 343 (125.8 bits), Expect = 5.8e-28, P = 5.8e-28
 Identities = 93/334 (27%), Positives = 163/334 (48%)

Query:   167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXX 226
             ++ + +G+T LH+A    + ++V+ L++ G  VE++ +    TP                
Sbjct:   418 NTTNVRGETALHMAARAGQTEVVRYLVQNGAQVEAKAKDD-QTPLHISARLGKADIVQQL 476

Query:   227 XXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXX 286
               + AS   + TS + P+HL+ R GH +V  +LL  GA++  +TK G T LH+A +    
Sbjct:   477 LQQGASPNAATTSGYTPLHLSAREGHEDVASVLLEHGASLAIITKKGFTPLHVAAKYGKI 536

Query:   287 XXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
                       A PD  + + G TPLH+ A    +++  LLL +GA+ +   K+G T   +
Sbjct:   537 EVANLLLQKNASPDA-SGKSGLTPLHVAAHYDNQKVALLLLDQGASPHASAKNGYTPLHI 595

Query:   347 AAECGHSRLFDAL-KLG-DSLCV----------AARKGEVRTMQRLIEAGAAINGKDLHG 394
             AA+     +   L + G D+  V          A++ G V  +  L+   A +N  +  G
Sbjct:   596 AAKKNQMDIATTLLEYGADANAVTRQGIAPVHLASQDGHVDMVSLLLTRNANVNLSNKSG 655

Query:   395 WTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVE 454
              T LH A+ + ++ V  +L+++G  VDA+ + GYT LH     G+  +   L++  A + 
Sbjct:   656 LTPLHLAAQEDRVNVAEVLVNQGAAVDAQTKMGYTPLHVGCHYGNIKIVNFLLQHSAKIN 715

Query:   455 ARTSKNVSPM-QIAECLHYAGISRILMHGGATKD 487
             A+T    +P+ Q A+  H   I+ +L HG A  +
Sbjct:   716 AKTKNGYTPLHQAAQQGHTHIINVLLQHGAAPNE 749

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX6 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 343 (125.8 bits), Expect = 6.2e-28, P = 6.2e-28
 Identities = 93/334 (27%), Positives = 163/334 (48%)

Query:   167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXX 226
             ++ + +G+T LH+A    + ++V+ L++ G  VE++ +    TP                
Sbjct:   418 NTTNVRGETALHMAARAGQTEVVRYLVQNGAQVEAKAKDD-QTPLHISARLGKADIVQQL 476

Query:   227 XXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXX 286
               + AS   + TS + P+HL+ R GH +V  +LL  GA++  +TK G T LH+A +    
Sbjct:   477 LQQGASPNAATTSGYTPLHLSAREGHEDVASVLLEHGASLAIITKKGFTPLHVAAKYGKI 536

Query:   287 XXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
                       A PD  + + G TPLH+ A    +++  LLL +GA+ +   K+G T   +
Sbjct:   537 EVANLLLQKNASPDA-SGKSGLTPLHVAAHYDNQKVALLLLDQGASPHASAKNGYTPLHI 595

Query:   347 AAECGHSRLFDAL-KLG-DSLCV----------AARKGEVRTMQRLIEAGAAINGKDLHG 394
             AA+     +   L + G D+  V          A++ G V  +  L+   A +N  +  G
Sbjct:   596 AAKKNQMDIATTLLEYGADANAVTRQGIAPVHLASQDGHVDMVSLLLTRNANVNLSNKSG 655

Query:   395 WTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVE 454
              T LH A+ + ++ V  +L+++G  VDA+ + GYT LH     G+  +   L++  A + 
Sbjct:   656 LTPLHLAAQEDRVNVAEVLVNQGAAVDAQTKMGYTPLHVGCHYGNIKIVNFLLQHSAKIN 715

Query:   455 ARTSKNVSPM-QIAECLHYAGISRILMHGGATKD 487
             A+T    +P+ Q A+  H   I+ +L HG A  +
Sbjct:   716 AKTKNGYTPLHQAAQQGHTHIINVLLQHGAAPNE 749

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX7 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 343 (125.8 bits), Expect = 6.6e-28, P = 6.6e-28
 Identities = 93/334 (27%), Positives = 163/334 (48%)

Query:   167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXX 226
             ++ + +G+T LH+A    + ++V+ L++ G  VE++ +    TP                
Sbjct:   418 NTTNVRGETALHMAARAGQTEVVRYLVQNGAQVEAKAKDD-QTPLHISARLGKADIVQQL 476

Query:   227 XXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXX 286
               + AS   + TS + P+HL+ R GH +V  +LL  GA++  +TK G T LH+A +    
Sbjct:   477 LQQGASPNAATTSGYTPLHLSAREGHEDVASVLLEHGASLAIITKKGFTPLHVAAKYGKI 536

Query:   287 XXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
                       A PD  + + G TPLH+ A    +++  LLL +GA+ +   K+G T   +
Sbjct:   537 EVANLLLQKNASPDA-SGKSGLTPLHVAAHYDNQKVALLLLDQGASPHASAKNGYTPLHI 595

Query:   347 AAECGHSRLFDAL-KLG-DSLCV----------AARKGEVRTMQRLIEAGAAINGKDLHG 394
             AA+     +   L + G D+  V          A++ G V  +  L+   A +N  +  G
Sbjct:   596 AAKKNQMDIATTLLEYGADANAVTRQGIAPVHLASQDGHVDMVSLLLTRNANVNLSNKSG 655

Query:   395 WTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVE 454
              T LH A+ + ++ V  +L+++G  VDA+ + GYT LH     G+  +   L++  A + 
Sbjct:   656 LTPLHLAAQEDRVNVAEVLVNQGAAVDAQTKMGYTPLHVGCHYGNIKIVNFLLQHSAKIN 715

Query:   455 ARTSKNVSPM-QIAECLHYAGISRILMHGGATKD 487
             A+T    +P+ Q A+  H   I+ +L HG A  +
Sbjct:   716 AKTKNGYTPLHQAAQQGHTHIINVLLQHGAAPNE 749

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-081104-19 si:ch211-173b16.3 "si:ch211-173b16.3" [Danio rerio (taxid:7955)]

 Score = 343 (125.8 bits), Expect = 6.7e-28, P = 6.7e-28
 Identities = 111/372 (29%), Positives = 168/372 (45%)

Query:   150 DDLRE--VLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGC 207
             DD R   VL ++DP  NP D     G T LHIA      ++ QLLL  G DV    + G 
Sbjct:   178 DDTRTAAVLLQNDP--NP-DVLSKTGFTPLHIAAHYENLNVAQLLLNRGADVNFTPKNGI 234

Query:   208 STPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVN 267
              TP                  R A  +        P+H A R GH+ ++++LL +GA + 
Sbjct:   235 -TPLHIASRRGNVIMVRLLLDRGAKIDAKTKDELTPLHCAARNGHVRIIEILLDQGAPIQ 293

Query:   268 ALTKDGNTALHLAVEXXXXX-XXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLL 326
             A TK+G + +H+A +             N    DI    D  TPLH+ A  G+ ++ K+L
Sbjct:   294 AKTKNGLSPIHMAAQGDHLDCIRQLLQYNAEIDDI--TLDHLTPLHVAAHCGHHRVAKVL 351

Query:   327 LQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL-KLGDSL-----------CVAARKGEV 374
             L KGA    R  +G T   +A +  H R+ D L K   SL            V++  G +
Sbjct:   352 LDKGAKPNTRALNGFTPLHIACKKNHMRVMDLLLKHSASLEAVTESGLTPLHVSSFMGHL 411

Query:   375 RTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCA 434
               ++ L++ GA+ N  ++   T LH AS  G  EV   L+     VDAK +D  T LHCA
Sbjct:   412 NIVKILMQKGASPNASNVKVETPLHMASRAGHCEV-EFLLQNAAPVDAKAKDDQTPLHCA 470

Query:   435 VESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNL 494
                GH ++ +LL++  A+  + T+   +P+ IA    +   + IL+   A    + +   
Sbjct:   471 SRMGHNEMVKLLLEHKANSNSTTTAGHTPLHIAAREGHTQTASILLDMNAQLTKMTKKGF 530

Query:   495 RQVSIQFGNGKV 506
               + +    GKV
Sbjct:   531 TPLHVAAKYGKV 542

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PJ90 ANK3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 342 (125.4 bits), Expect = 7.9e-28, P = 7.9e-28
 Identities = 98/346 (28%), Positives = 160/346 (46%)

Query:   175 TLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTE 234
             T LH+A  +   ++V+LLL+ G  ++++ R G  TP                  R A   
Sbjct:   270 TPLHVASKRGNANMVKLLLDRGAKIDAKTRDGL-TPLHCGARSGHEQVVEMLLDRAAPIL 328

Query:   235 RSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXX 294
                 +   P+H+A +G HL  ++LLL     V+ +T D  TALH+A              
Sbjct:   329 SKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAAHCGHYKVAKVLLD 388

Query:   295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
               A P+ + A +G TPLHI       ++++LLL+ GA+     +SG T   VAA  GH  
Sbjct:   389 KKANPNAK-ALNGFTPLHIACKKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVN 447

Query:   355 LFDALK-----------LGDS-LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRAS 402
             +   L             G++ L +AAR G+   ++ L++ GA +  K     T LH ++
Sbjct:   448 IVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISA 507

Query:   403 FKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVS 462
               GK ++V+ L+ +G   +A    GYT LH +   GH DV   L+  GA +   T K  +
Sbjct:   508 RLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFT 567

Query:   463 PMQIAECLHYAGISRILMHGGATKDGIQQTNLR--QVSIQFGNGKV 506
             P+ +A       ++ +L+   A+ D   ++ L    V+  + N KV
Sbjct:   568 PLHVAAKYGKLEVANLLLQKSASPDAAGKSGLTPLHVAAHYDNQKV 613

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|K7GLA8 ANK3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 342 (125.4 bits), Expect = 8.3e-28, P = 8.3e-28
 Identities = 98/346 (28%), Positives = 160/346 (46%)

Query:   175 TLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTE 234
             T LH+A  +   ++V+LLL+ G  ++++ R G  TP                  R A   
Sbjct:   232 TPLHVASKRGNANMVKLLLDRGAKIDAKTRDGL-TPLHCGARSGHEQVVEMLLDRAAPIL 290

Query:   235 RSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXX 294
                 +   P+H+A +G HL  ++LLL     V+ +T D  TALH+A              
Sbjct:   291 SKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAAHCGHYKVAKVLLD 350

Query:   295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
               A P+ + A +G TPLHI       ++++LLL+ GA+     +SG T   VAA  GH  
Sbjct:   351 KKANPNAK-ALNGFTPLHIACKKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVN 409

Query:   355 LFDALK-----------LGDS-LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRAS 402
             +   L             G++ L +AAR G+   ++ L++ GA +  K     T LH ++
Sbjct:   410 IVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISA 469

Query:   403 FKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVS 462
               GK ++V+ L+ +G   +A    GYT LH +   GH DV   L+  GA +   T K  +
Sbjct:   470 RLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFT 529

Query:   463 PMQIAECLHYAGISRILMHGGATKDGIQQTNLR--QVSIQFGNGKV 506
             P+ +A       ++ +L+   A+ D   ++ L    V+  + N KV
Sbjct:   530 PLHVAAKYGKLEVANLLLQKSASPDAAGKSGLTPLHVAAHYDNQKV 575

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	541
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-36
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-35
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-34
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-33
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-31
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-30
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-26
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-24
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-24
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-23
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-22
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-21
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-21
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-19
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-18
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-18
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-17
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-16
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-15
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-15
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-14
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-14
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-13
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-13
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-12
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-12
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-11
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	5e-11
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-10
pfam00635	109	pfam00635, Motile_Sperm, MSP (Major sperm protein)	4e-10
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-10
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-10
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-10
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	7e-10
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	5e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	9e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-08
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	9e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-07
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	1e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-07
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	3e-07
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	3e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	7e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	9e-07
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	9e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-06
smart00248	30	smart00248, ANK, ankyrin repeats	4e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	9e-06
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	1e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-05
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	3e-05
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	3e-05
PHA02795	437	PHA02795, PHA02795, ankyrin-like protein; Provisio	3e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-05
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	4e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	5e-05
smart00248	30	smart00248, ANK, ankyrin repeats	5e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	7e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	7e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-04
smart00248	30	smart00248, ANK, ankyrin repeats	1e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
COG5066	242	COG5066, SCS2, VAMP-associated protein involved in	2e-04
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	3e-04
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	7e-04
smart00248	30	smart00248, ANK, ankyrin repeats	8e-04
smart00248	30	smart00248, ANK, ankyrin repeats	0.002
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.002
PHA02917	661	PHA02917, PHA02917, ankyrin-like protein; Provisio	0.003
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  131 bits (331), Expect = 2e-36
 Identities = 55/117 (47%), Positives = 75/117 (64%), Gaps = 1/117 (0%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIR 302
           P+HLA   GHLEV+KLLL  GA+VNA   DG T LHLA ++   +  +LLL  GA  + R
Sbjct: 10  PLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69

Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL 359
           + +DG+TPLH+ A  G   +VKLLL+ GA+   R+K G+T   +AA+ GH  +   L
Sbjct: 70  D-KDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  128 bits (323), Expect = 2e-35
 Identities = 54/148 (36%), Positives = 87/148 (58%), Gaps = 22/148 (14%)

Query: 300 DIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL 359
           + R+  DG TPLH+ AS G+ ++VKLLL+ GA+   ++  G+T   +AA+ GH       
Sbjct: 1   NARD-EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGH------- 52

Query: 360 KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGID 419
                         +  ++ L+E GA +N +D  G T LH A+  G ++VV++L+  G D
Sbjct: 53  --------------LEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD 98

Query: 420 VDAKDEDGYTALHCAVESGHTDVTELLV 447
           V+A+D+DG T LH A ++GH +V +LL+
Sbjct: 99  VNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  124 bits (312), Expect = 9e-34
 Identities = 62/161 (38%), Positives = 88/161 (54%), Gaps = 35/161 (21%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           ++ D  G+T LH+A +    ++V+LLLE G DV ++   G +                  
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRT------------------ 42

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
                           P+HLA + GHLE++KLLL KGA+VNA  KDGNT LHLA  +   
Sbjct: 43  ----------------PLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNL 86

Query: 287 DCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLL 327
           D  +LLL +GA  + R+ +DG TPLH+ A  G+ ++VKLLL
Sbjct: 87  DVVKLLLKHGADVNARD-KDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  123 bits (311), Expect = 1e-33
 Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 22/148 (14%)

Query: 267 NALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLL 326
           NA  +DG T LHLA  +   +  +LLL NGA  + ++  DG TPLH+ A  G+ ++VKLL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKD-NDGRTPLHLAAKNGHLEIVKLL 59

Query: 327 LQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAA 386
           L+KGA+   R+K G T                      L +AAR G +  ++ L++ GA 
Sbjct: 60  LEKGADVNARDKDGNTP---------------------LHLAARNGNLDVVKLLLKHGAD 98

Query: 387 INGKDLHGWTALHRASFKGKIEVVRMLI 414
           +N +D  G T LH A+  G +EVV++L+
Sbjct: 99  VNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  115 bits (291), Expect = 8e-31
 Identities = 47/116 (40%), Positives = 75/116 (64%)

Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
           L +AA  G +  ++ L+E GA +N KD  G T LH A+  G +E+V++L++KG DV+A+D
Sbjct: 11  LHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARD 70

Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +DG T LH A  +G+ DV +LL+K GADV AR     +P+ +A    +  + ++L+
Sbjct: 71  KDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score =  123 bits (310), Expect = 1e-30
 Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 17/223 (7%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHL-----AVEDRRRDCARLLLANGA 297
           P++LA    +++V+K+LL  GA++N+ TK+ +T LH            ++  +LLL  GA
Sbjct: 38  PLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGA 97

Query: 298 RPDIRNARDGDTPLHITAS--LGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRL 355
             +  +  +G TPL    S       +V+ LL  GAN  I+N  G+    +  E     L
Sbjct: 98  NVNAPD-NNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDL 156

Query: 356 FDALKLGDSLCVAARKGEVRTMQR---LIEAGAAINGKDLHGWTALHRASFKGKIEVVRM 412
              LKL     +  +  ++    R   L+  G  IN KD++G+T LH A +    E V+ 
Sbjct: 157 -KILKL-----LIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKY 210

Query: 413 LIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEA 455
           L+D G + +  ++ G T LH A+ + + ++ +LL+  G  ++ 
Sbjct: 211 LLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT 253

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score =  110 bits (277), Expect = 5e-26
 Identities = 87/293 (29%), Positives = 126/293 (43%), Gaps = 41/293 (13%)

Query: 187 DIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEAL---IVELLLARKASTERSETSTWGP 243
           + V+ LL  G DV  +G  G  TPL             IV LLL   A     E   + P
Sbjct: 28  EEVRRLLAAGADVNFRGEYGK-TPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTP 86

Query: 244 IHLALRGGH-LEVLKLLLIKGANVNALTKDGNTALH--LAVEDRRRDCARLLLANGARPD 300
           +HL L     L+V+KLL+  GA+VNA  K G T LH  L+  +      RLLL  GA   
Sbjct: 87  LHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV- 145

Query: 301 IRNARD--GDTPLHI-----TASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHS 353
             NA D  G TPL +      A++    +++LL+  GA+ Y  +   ++      +    
Sbjct: 146 --NALDLYGMTPLAVLLKSRNANVE---LLRLLIDAGADVYAVDDRFRSLLHHHLQSFKP 200

Query: 354 RLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKG--KIEVVR 411
           R              AR      ++ LI AG      D+ G T LH  +     K  +V 
Sbjct: 201 R--------------ARI-----VRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVL 241

Query: 412 MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPM 464
            L+  GI ++A++  G T LH A    +      L+  GAD+ A +S   +P+
Sbjct: 242 PLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPL 294

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 98.5 bits (246), Expect = 5e-25
 Identities = 38/92 (41%), Positives = 63/92 (68%), Gaps = 2/92 (2%)

Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
           L +AA+ G +  ++ L+E GA +N  D    TALH A+  G +E+V++L++ G DV+AKD
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
           +DG TALH A  +G+ ++ +LL++ GAD+  +
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 97.5 bits (243), Expect = 4e-24
 Identities = 40/100 (40%), Positives = 63/100 (63%)

Query: 388 NGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLV 447
           N +D  G T LH A+  G +EVV++L++ G DV+AKD DG T LH A ++GH ++ +LL+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 448 KKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKD 487
           +KGADV AR     +P+ +A       + ++L+  GA  +
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVN 100

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 99.5 bits (247), Expect = 9e-24
 Identities = 70/250 (28%), Positives = 102/250 (40%), Gaps = 22/250 (8%)

Query: 159 SDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAG 218
           S P+ +     +     LL +A+                   S  +      L    AA 
Sbjct: 1   SKPSLSALLLINKCFLDLLLVALLLLLSLD--------LSNPSDKKLNLYLELALLPAAS 52

Query: 219 EALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALH 278
            + +  L L         +     P+H A   G  +++KLLL  GA+VNA   DG+T LH
Sbjct: 53  LSEL-LLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLH 111

Query: 279 LAV-----EDRRRDCARLLLANGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGA 331
           LA       +   + A+LLL  GA  D+ N RD  G+TPLH  A  G   +V+LLL+ GA
Sbjct: 112 LAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA 171

Query: 332 NKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKD 391
           +   RN  G TA D AA+ G   L   L          +            A A ++ ++
Sbjct: 172 DPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFN------LEGVANANVSKRN 225

Query: 392 LHGWTALHRA 401
           +   T+L  A
Sbjct: 226 ILNLTSLIIA 235

Length = 235

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score =  103 bits (257), Expect = 5e-23
 Identities = 65/218 (29%), Positives = 99/218 (45%), Gaps = 56/218 (25%)

Query: 264 ANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMV 323
           +N+  +   GN AL   +E+        LL     PDI +++ G TPLHI AS GYE  V
Sbjct: 527 SNLLTVASTGNAAL---LEE--------LLKAKLDPDIGDSK-GRTPLHIAASKGYEDCV 574

Query: 324 KLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL----------KLGDSLCVAARKGE 373
            +LL+   N +IR+ +G TA   A    H ++F  L            GD LC AA++ +
Sbjct: 575 LVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRND 634

Query: 374 VRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHC 433
           +                                   ++ L+ +G++VD++D  G TAL  
Sbjct: 635 L---------------------------------TAMKELLKQGLNVDSEDHQGATALQV 661

Query: 434 AVESGHTDVTELLVKKGADVE-ARTSKNVSPMQIAECL 470
           A+   H D+  LL+  GADV+ A T  + SP ++ E L
Sbjct: 662 AMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELL 699

Length = 823

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score =  100 bits (251), Expect = 1e-22
 Identities = 83/306 (27%), Positives = 128/306 (41%), Gaps = 39/306 (12%)

Query: 175 TLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEAL-IVELLLARKAST 233
             LH +  +   DIV+LLLE G DV +  RCG  TPL         L +++LL+   A  
Sbjct: 53  LYLHYSSEKV-KDIVRLLLEAGADVNAPERCGF-TPLHLYLYNATTLDVIKLLIKAGADV 110

Query: 234 ERSETSTWGPIHLALRGG--HLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCA-- 289
              +     P+H+ L G   + +V++LLL KGA+VNAL   G T L + ++ R  +    
Sbjct: 111 NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELL 170

Query: 290 RLLLANGARPDIRNARDGDTPLHITA--SLGYEQMVKLLLQKGANKYIRNKSGKTAYDVA 347
           RLL+  GA     + R   + LH          ++V+ L++ G +    +  G T     
Sbjct: 171 RLLIDAGADVYAVDDR-FRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSM 229

Query: 348 AECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKI 407
           A     +         SL           +  L+ AG +IN ++ +G T LH A+     
Sbjct: 230 ATGSSCK--------RSL-----------VLPLLIAGISINARNRYGQTPLHYAAVFNNP 270

Query: 408 EVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
              R LI  G D++A   DG T L   V + +       + K    E           +A
Sbjct: 271 RACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAET----------VA 320

Query: 468 ECLHYA 473
             L+ A
Sbjct: 321 ATLNTA 326

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 98.0 bits (244), Expect = 1e-21
 Identities = 78/328 (23%), Positives = 140/328 (42%), Gaps = 29/328 (8%)

Query: 150 DDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCST 209
           + + + +E  D   N + SA       LH A+  R  D+V+ LL  G +V         T
Sbjct: 14  ETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRD-LT 72

Query: 210 PLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNAL 269
           PL         L ++ ++      + S   T   I  A    ++E+ K++L         
Sbjct: 73  PLHIICKEPNKLGMKEMIRSI--NKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQT 130

Query: 270 TKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQK 329
                       +    +  +LLL+ GA  ++++   G+T LH       +++ +LLL  
Sbjct: 131 IDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSY 190

Query: 330 GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAING 389
           GAN  I +K             +S L  A+          +      +  L+E GA+ + 
Sbjct: 191 GANVNIPDK-----------TNNSPLHHAV----------KHYNKPIVHILLENGASTDA 229

Query: 390 KDLHGWTALHRASFKGK-IEVVRMLIDKGIDVDAKDE-DGYTALHCAVESGHTDVTELLV 447
           +D  G T LH +    K  +++++L++ G+DV+AK    G TALH +++S      +LL+
Sbjct: 230 RDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKS--ERKLKLLL 287

Query: 448 KKGADVEARTSKNVSPMQIAECLHYAGI 475
           + GAD+ +  S  ++P+  A    Y  I
Sbjct: 288 EYGADINSLNSYKLTPLSSA-VKQYLCI 314

Length = 477

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 88.1 bits (219), Expect = 2e-21
 Identities = 42/93 (45%), Positives = 59/93 (63%), Gaps = 2/93 (2%)

Query: 211 LEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALT 270
           L  AA  G   +V+LLL + A     +T T   +HLA R G+LE++KLLL  GA+VNA  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDT--ALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 271 KDGNTALHLAVEDRRRDCARLLLANGARPDIRN 303
           KDGNTALHLA  +   +  +LLL +GA  ++++
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 89.0 bits (221), Expect = 3e-21
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 38/158 (24%)

Query: 136 GSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEF 195
           G   L L   +G ++ ++ +LE         ++ D  G+T LH+A      +IV+LLLE 
Sbjct: 7   GRTPLHLAASNGHLEVVKLLLENGADV----NAKDNDGRTPLHLAAKNGHLEIVKLLLEK 62

Query: 196 GPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEV 255
           G DV ++ + G +                                  P+HLA R G+L+V
Sbjct: 63  GADVNARDKDGNT----------------------------------PLHLAARNGNLDV 88

Query: 256 LKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLL 293
           +KLLL  GA+VNA  KDG T LHLA ++   +  +LLL
Sbjct: 89  VKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 91.0 bits (225), Expect = 9e-21
 Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 21/228 (9%)

Query: 239 STWGPIHLALRGGHLEVLKLLLIKGAN--VNALTKDGNTALHLAVEDRRRDCARLLLANG 296
            +   + L  +     +L  LL+  +    N   K  N  L LA+         LL    
Sbjct: 3   PSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIV 62

Query: 297 ARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLF 356
            R       DG  PLH  AS G +++VKLLL  GA+   ++  G T   +AA  G+    
Sbjct: 63  DRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPE- 121

Query: 357 DALKLGDSLCVAARKGEVRTMQRLIEAGA---AINGKDLHGWTALHRASFKGKIEVVRML 413
                          G +   + L+EAGA     N +D  G T LH A+  G  ++V +L
Sbjct: 122 ---------------GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELL 166

Query: 414 IDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNV 461
           ++ G D ++++  G TAL  A ++G  ++ +LL+ KG  +        
Sbjct: 167 LEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLE 214

Length = 235

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 94.4 bits (234), Expect = 3e-20
 Identities = 98/337 (29%), Positives = 159/337 (47%), Gaps = 29/337 (8%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           ++ D    T +H A  +    +V LLL +G DV        S  LE A  +     ++ +
Sbjct: 172 NAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSV-LECAVDSKNIDTIKAI 230

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
           +  +++  +++ S       A+R   LE   LL   G +VN++    NT LH A +    
Sbjct: 231 IDNRSNINKNDLSLLK----AIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQ--AP 284

Query: 287 DCARL---LLANGARPDIRNARDGDTPLHITASLGYE-QMVKLLLQKGANKYIRNKSGKT 342
             +RL   LL  GA  + +N + G+TPL++ A  GY+ + ++ L+  GA+    ++   T
Sbjct: 285 SLSRLVPKLLERGADVNAKNIK-GETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYIT 343

Query: 343 AYDVAAECGHSR--LFDALKLGDSLCV-----------AARKGEVRTMQRLIEAGAAING 389
               A+    ++  +   L+LG ++             AA +  V  +  L++ GA I  
Sbjct: 344 PLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEA 403

Query: 390 KDLHGWTALHRASF-KGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESG-HTDVTELLV 447
                 TALH A         V+ LID+G +V++K++D  T LH A +     DV E+L+
Sbjct: 404 LSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLL 463

Query: 448 KKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
             GADV A   +N  P+ IA  L Y GI  IL+H GA
Sbjct: 464 DNGADVNAINIQNQYPLLIA--LEYHGIVNILLHYGA 498

Length = 682

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 82.3 bits (204), Expect = 2e-19
 Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 23/114 (20%)

Query: 311 LHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAAR 370
           LH+ A  G  ++VKLLL+KGA+  + +    TA                     L +AAR
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TA---------------------LHLAAR 37

Query: 371 KGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
            G +  ++ L+E GA +N KD  G TALH A+  G +E+V++L++ G D++ KD
Sbjct: 38  NGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 87.7 bits (217), Expect = 1e-18
 Identities = 72/283 (25%), Positives = 127/283 (44%), Gaps = 48/283 (16%)

Query: 209 TPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGAN--- 265
           TPL  A  +G+A IVEL +   A      T    P+  A++ G  +++KLL+  G +   
Sbjct: 37  TPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSI 96

Query: 266 --------------------VNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNAR 305
                               VN    +  T LH A++    +  ++L   GA  +I +  
Sbjct: 97  LPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD- 155

Query: 306 DGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSL 365
           +G  P+HI     +  ++KLLL+KGA   +++ +G++            L +A + GD  
Sbjct: 156 NGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESP-----------LHNAAEYGDYA 204

Query: 366 CVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE 425
           C+          + LI+ G  I  K  +G+T LH A    +   + +LI+    ++ +D 
Sbjct: 205 CI----------KLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLINNA-SINDQDI 252

Query: 426 DGYTALHCAVE-SGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
           DG T LH A+      D+ ++L+   AD+  + +K  +P+  A
Sbjct: 253 DGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTA 295

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 87.8 bits (218), Expect = 2e-18
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 40/226 (17%)

Query: 253 LEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCA---RLLLANGARPDIRNARD--G 307
           +E ++ LL  GA+VN   + G T LHL +           RLLL  GA  D+ NA +  G
Sbjct: 27  VEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGA--DV-NAPERCG 83

Query: 308 DTPLHITASLGY-EQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLC 366
            TPLH+         ++KLL++ GA+   ++K G+T   V    G +     ++L     
Sbjct: 84  FTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYL-SGFNINPKVIRL----- 137

Query: 367 VAARKGEVRTMQRLIEAGAAINGKDLHGWTALH------RASFKGKIEVVRMLIDKGIDV 420
                        L+  GA +N  DL+G T L        A+    +E++R+LID G DV
Sbjct: 138 -------------LLRKGADVNALDLYGMTPLAVLLKSRNAN----VELLRLLIDAGADV 180

Query: 421 DAKDEDGYTALHCAVESGHTD--VTELLVKKGADVEARTSKNVSPM 464
            A D+   + LH  ++S      +   L++ G D  A      +P+
Sbjct: 181 YAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPL 226

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 86.6 bits (214), Expect = 4e-18
 Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 22/211 (10%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIR 302
           PI LA++    E +KLL+  GA  +    D  + LH AVE+        LL  G   D  
Sbjct: 38  PIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDV 97

Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLG 362
             +DG TPLH+   L    ++KLL+ +GA+  I N    +                    
Sbjct: 98  FYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFS-------------------- 137

Query: 363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
             L +A   G+++ ++ LI+  A ++ +D  G T L  A  KG I + +ML+D G ++D 
Sbjct: 138 -PLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDY 196

Query: 423 KDEDGYTALHC-AVESGHTDVTELLVKKGAD 452
             ++G  A  C A+E+   D+  L +K+GAD
Sbjct: 197 FGKNGCVAALCYAIENNKIDIVRLFIKRGAD 227

Length = 413

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 75.4 bits (186), Expect = 8e-17
 Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 2/90 (2%)

Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
           LH A+  G +E+V++L++KG DV+  D D  TALH A  +G+ ++ +LL++ GADV A+ 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 458 SKNVSPMQIAECLHYAGISRILMHGGATKD 487
               + + +A       I ++L+  GA  +
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 81.2 bits (200), Expect = 2e-16
 Identities = 65/261 (24%), Positives = 117/261 (44%), Gaps = 36/261 (13%)

Query: 177 LHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERS 236
           L  AI     DI++LL++ G D         ++ L       + +   L      + + +
Sbjct: 72  LLTAIKIGAHDIIKLLIDNGVD---------TSILPIPCIEKDMIKTILDCGIDVNIKDA 122

Query: 237 ETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANG 296
           E  T+  +H A++ G LE +K+L   GA+VN    +G   +H+A++    D  +LLL  G
Sbjct: 123 ELKTF--LHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG 180

Query: 297 ARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLF 356
           A  ++++  +G++PLH  A  G    +KLL+  G +   + K+G T    A       + 
Sbjct: 181 AYANVKD-NNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI------IH 233

Query: 357 DALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRA-SFKGKIEVVRMLID 415
           +                 R+   L+   A+IN +D+ G T LH A +    I+++ +L+ 
Sbjct: 234 N-----------------RSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLY 276

Query: 416 KGIDVDAKDEDGYTALHCAVE 436
              D+  KD  G   +  A +
Sbjct: 277 HKADISIKDNKGENPIDTAFK 297

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 80.0 bits (197), Expect = 5e-16
 Identities = 56/237 (23%), Positives = 102/237 (43%), Gaps = 46/237 (19%)

Query: 237 ETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANG 296
           ET+T  P+  A+R G  ++++L +  GA++N +       L  A++    D  +LL+ NG
Sbjct: 34  ETTT--PLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNG 91

Query: 297 AR------PDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAEC 350
                   P I                    M+K +L  G +  I++   KT        
Sbjct: 92  VDTSILPIPCIEK-----------------DMIKTILDCGIDVNIKDAELKTF------- 127

Query: 351 GHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVV 410
                         L  A +KG++ +++ L E GA +N +D +G   +H A      +++
Sbjct: 128 --------------LHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDII 173

Query: 411 RMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
           ++L++KG   + KD +G + LH A E G     +LL+  G  +  +     +P+  A
Sbjct: 174 KLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA 230

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 71.1 bits (175), Expect = 3e-15
 Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 177 LHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERS 236
           LH+A      ++V+LLLE G DV         T L  AA  G   IV+LLL   A     
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 237 ETSTWGPIHLALRGGHLEVLKLLLIKGANVNA 268
           +      +HLA R G+LE++KLLL  GA++N 
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 70.4 bits (173), Expect = 4e-15
 Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 24/115 (20%)

Query: 277 LHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIR 336
           LHLA ++   +  +LLL  GA     N  D DT LH+ A  G  ++VKLLL+ GA+   +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 337 NKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKD 391
           +K G TA                     L +AAR G +  ++ L+E GA IN KD
Sbjct: 58  DKDGNTA---------------------LHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 68.4 bits (168), Expect = 9e-15
 Identities = 27/54 (50%), Positives = 43/54 (79%)

Query: 394 GWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLV 447
           G TALH+A+  G++E+V+ L++KG+D++  DEDG TALH A E+G+ +V +LL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 75.9 bits (186), Expect = 2e-14
 Identities = 74/287 (25%), Positives = 123/287 (42%), Gaps = 60/287 (20%)

Query: 219 EALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALH 278
           E LI E+LL   A     +     PIH A   G+ +++ LLL  GA+VN +  D  + L 
Sbjct: 157 ELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLE 216

Query: 279 LAVEDRRRDCARLLLANGARPDIR----------------------------NARD--GD 308
            AV+ +  D  + ++ N  R +I                             N+ D   +
Sbjct: 217 CAVDSKNIDTIKAIIDN--RSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKN 274

Query: 309 TPLH-ITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCV 367
           TPLH  + +    ++V  LL++GA+   +N  G+T   + A+ G+               
Sbjct: 275 TPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGY--------------- 319

Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKI-EVVRMLIDKGIDVDAKDED 426
                +   ++ LI  GA +N  D    T LH+AS   +  ++V  L++ G +V+A+D  
Sbjct: 320 -----DTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYC 374

Query: 427 GYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
             T +H A    +  +   L+  GAD+EA + K      I   LH+A
Sbjct: 375 DKTPIHYAAVRNNVVIINTLLDYGADIEALSQK------IGTALHFA 415

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 73.5 bits (180), Expect = 5e-14
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 6/133 (4%)

Query: 172 QGQTLLHIAIAQRRPDIVQLLLEFG--PDVESQGRCGCSTPLEAAAAAGEALIVELLLAR 229
            G T LH+A   ++ DI++LL+  G  PD+ +  +    +PL  A   G+   +ELL+  
Sbjct: 101 DGMTPLHLATILKKLDIMKLLIARGADPDIPNTDK---FSPLHLAVMMGDIKGIELLIDH 157

Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGN-TALHLAVEDRRRDC 288
           KA  +  +     P+ +A+  G + + K+LL  GAN++   K+G   AL  A+E+ + D 
Sbjct: 158 KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI 217

Query: 289 ARLLLANGARPDI 301
            RL +  GA  +I
Sbjct: 218 VRLFIKRGADCNI 230

Length = 413

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 20/154 (12%)

Query: 309 TPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVA 368
            PL++        +VK+LL  GA+     K+  T         H        L D     
Sbjct: 37  LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPL-------HYLSNIKYNLTDV---- 85

Query: 369 ARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFK--GKIEVVRMLIDKGIDVDAKDED 426
                   ++ L+E GA +N  D +G T L  A  K      +V  L+D G +V+ K+ D
Sbjct: 86  -----KEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSD 140

Query: 427 GYTALHCAVESGHTD--VTELLVKKGADVEARTS 458
           G   LH  +ES   D  + +LL+ KG D+ A+  
Sbjct: 141 GENLLHLYLESNKIDLKILKLLIDKGVDINAKNR 174

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 70.8 bits (173), Expect = 5e-13
 Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 14/222 (6%)

Query: 130 IKIMFV-GSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDI 188
           IK++   G    +L +   E D ++ +L+         +  DA+ +T LH AI +   + 
Sbjct: 84  IKLLIDNGVDTSILPIPCIEKDMIKTILD----CGIDVNIKDAELKTFLHYAIKKGDLES 139

Query: 189 VQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLAL 248
           +++L E+G DV  +   GC  P+  A       I++LLL + A     + +   P+H A 
Sbjct: 140 IKMLFEYGADVNIEDDNGC-YPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAA 198

Query: 249 RGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGD 308
             G    +KLL+  G ++    K+G T LH A+   R   A  LL N A  + ++  DG 
Sbjct: 199 EYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS--AIELLINNASINDQDI-DGS 255

Query: 309 TPLHITASLGY---EQMVKLLLQKGANKYIRNKSGKTAYDVA 347
           TPLH   ++       ++ +LL   A+  I++  G+   D A
Sbjct: 256 TPLH--HAINPPCDIDIIDILLYHKADISIKDNKGENPIDTA 295

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 69.9 bits (171), Expect = 1e-12
 Identities = 61/263 (23%), Positives = 112/263 (42%), Gaps = 32/263 (12%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIR 302
           P+H A+   +L+V+K LL +G NVN       T LH+  ++  +   + ++ +  +  + 
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV- 98

Query: 303 NARDGDTPLHITASLGYE--QMVKLLL-------QKGANKYIRNKSGKTAYDVAAECGHS 353
                 T + I  +      ++ K++L       Q     YI  KS     D   E   +
Sbjct: 99  ----FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKS----KDDIIEAEIT 150

Query: 354 RLF----------DALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASF 403
           +L           D  K   +L  A    + R  + L+  GA +N  D    + LH A  
Sbjct: 151 KLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVK 210

Query: 404 KGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVES-GHTDVTELLVKKGADVEARTS-KNV 461
                +V +L++ G   DA+D+ G T LH +V      D+ +LL++ G DV A++    +
Sbjct: 211 HYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGL 270

Query: 462 SPMQIAECLHYAGISRILMHGGA 484
           + +  +  +      ++L+  GA
Sbjct: 271 TALHSS--IKSERKLKLLLEYGA 291

Length = 477

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 67.3 bits (164), Expect = 6e-12
 Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 27/204 (13%)

Query: 287 DCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
           D AR LL  G  P+     DG +P+ +       + +KLL++ GA             DV
Sbjct: 16  DIARRLLDIGINPNF-EIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-----------DV 63

Query: 347 AAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAING---KDLHGWTALHRASF 403
                 S L DA++          +G+V+ ++ L++ G   +    KD  G T LH A+ 
Sbjct: 64  KYPDIESELHDAVE----------EGDVKAVEELLDLGKFADDVFYKD--GMTPLHLATI 111

Query: 404 KGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSP 463
             K++++++LI +G D D  + D ++ LH AV  G     ELL+   A ++       +P
Sbjct: 112 LKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTP 171

Query: 464 MQIAECLHYAGISRILMHGGATKD 487
           + IA       I ++L+  GA  D
Sbjct: 172 LIIAMAKGDIAICKMLLDSGANID 195

Length = 413

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 65.7 bits (160), Expect = 4e-11
 Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 5/158 (3%)

Query: 166 ADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVEL 225
            D  D++G+T LHIA ++   D V +LL+   +V  +   G +T L  A +A    I  +
Sbjct: 551 PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANG-NTALWNAISAKHHKIFRI 609

Query: 226 LLARKASTERSETSTWGPIH-LALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDR 284
           L    +    S+    G +   A +   L  +K LL +G NV++    G TAL +A+ + 
Sbjct: 610 LYHFASI---SDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAED 666

Query: 285 RRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQM 322
             D  RLL+ NGA  D  N  D  +P  +   L   ++
Sbjct: 667 HVDMVRLLIMNGADVDKANTDDDFSPTELRELLQKREL 704

Length = 823

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 64.9 bits (158), Expect = 5e-11
 Identities = 32/82 (39%), Positives = 45/82 (54%)

Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
           LC  A  G+    + L+  GA  N +D  G T LH A   G ++VVR+L++ G D    D
Sbjct: 86  LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD 145

Query: 425 EDGYTALHCAVESGHTDVTELL 446
           +DG T L  A E+G  +V +LL
Sbjct: 146 KDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 11/135 (8%)

Query: 177 LHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEAL-IVELLLARKASTE- 234
           LH A+      IV +LLE G   +++ +CG +TPL  +    +   I++LLL        
Sbjct: 205 LHHAVKHYNKPIVHILLENGASTDARDKCG-NTPLHISVGYCKDYDILKLLLEHGVDVNA 263

Query: 235 RSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR-DCARLLL 293
           +S       +H +++      LKLLL  GA++N+L     T L  AV+     +  R+L+
Sbjct: 264 KSYILGLTALHSSIKSE--RKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILI 321

Query: 294 AN-----GARPDIRN 303
           +N       +PDI+N
Sbjct: 322 SNICLLKRIKPDIKN 336

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 23/54 (42%), Positives = 33/54 (61%)

Query: 240 TWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLL 293
               +H A   G LE++K LL KG ++N   +DGNTALH+A E+   +  +LLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 61.9 bits (150), Expect = 3e-10
 Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 1/108 (0%)

Query: 376 TMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAV 435
            ++ +++ G  +N KD    T LH A  KG +E ++ML + G DV+ +D++G   +H A+
Sbjct: 106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAI 165

Query: 436 ESGHTDVTELLVKKGADVEARTSKNVSPMQ-IAECLHYAGISRILMHG 482
           +    D+ +LL++KGA    + +   SP+   AE   YA I  ++ HG
Sbjct: 166 KHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHG 213

Length = 434

>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 4   LVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLA 63
           L++++P +L+       ++ +  LTL N      VAF+++ TN  RY V+P  GI+ P  
Sbjct: 1   LLTIDPPDLLFFAAPGDKQGTSTLTLTNP-SDKRVAFKVKTTNPKRYRVRPNYGILKPGE 59

Query: 64  TLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATST 108
           ++++ I    P      D      D F++     P        + 
Sbjct: 60  SVTITI-TRQPFDKEPGDP---KKDKFVIQYTEAPDDAKDAKEAF 100

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 55.1 bits (133), Expect = 4e-10
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 380 LIEAG-AAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCA 434
           L+E G   +N  D +G T LH A+  G +E+V+ L+  G+D++ +D DG TAL  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 60.8 bits (147), Expect = 7e-10
 Identities = 41/159 (25%), Positives = 72/159 (45%)

Query: 177 LHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERS 236
           LH A+ +     V+ LL+ G   +        TPL  A    +  I++LL+AR A  +  
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131

Query: 237 ETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANG 296
            T  + P+HLA+  G ++ ++LL+   A ++     G T L +A+        ++LL +G
Sbjct: 132 NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG 191

Query: 297 ARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYI 335
           A  D          L          +V+L +++GA+  I
Sbjct: 192 ANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI 230

Length = 413

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 61.5 bits (149), Expect = 7e-10
 Identities = 29/79 (36%), Positives = 45/79 (56%)

Query: 215 AAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGN 274
           AA+G+A+   +LL   A     +     P+H+A   GH++V+++LL  GA+   L KDG 
Sbjct: 90  AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGK 149

Query: 275 TALHLAVEDRRRDCARLLL 293
           T L LA E+  R+  +LL 
Sbjct: 150 TPLELAEENGFREVVQLLS 168

Length = 664

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 61.0 bits (148), Expect = 7e-10
 Identities = 57/259 (22%), Positives = 104/259 (40%), Gaps = 73/259 (28%)

Query: 253 LEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR-----DCARLLLANGARPDIRNARDG 307
            +++KL +  GANVN L  + +T L   + + +      D  ++L+ NGA  + +N  DG
Sbjct: 51  TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKN-SDG 109

Query: 308 DTPLHITASLGY---EQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDS 364
           +TPL+   S GY    +++  +++ GA+  + +K G T   V  +  H    + +KL   
Sbjct: 110 ETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKL--- 166

Query: 365 LCVAARKGEVRTMQRLIEAGAAING-KDLHGWTALHRASFKGKI-----EVVRMLIDKG- 417
                          L+E G  IN   +   +  LH   FK  I     +++++ +D G 
Sbjct: 167 ---------------LLEKGVDINTHNNKEKYDTLH-CYFKYNIDRIDADILKLFVDNGF 210

Query: 418 --------------------------------------IDVDAKDEDGYTALHCAVESGH 439
                                                 ID++  DE G+  L+ +V   +
Sbjct: 211 IINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNN 270

Query: 440 TDVTELLVKKGADVEARTS 458
             + E L++ G D+   T 
Sbjct: 271 RKIFEYLLQLGGDINIITE 289

Length = 489

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 380 LIEAGAAINGKDLHGWTALH---RASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVE 436
           LIE GA IN K+  G T L+      +   +E++  +I+ G D    D+DG+T L   ++
Sbjct: 95  LIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQ 154

Query: 437 SGHT---DVTELLVKKGADVEARTSK 459
           S H    ++ +LL++KG D+    +K
Sbjct: 155 SNHHIDIEIIKLLLEKGVDINTHNNK 180

Length = 489

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 52.6 bits (127), Expect = 7e-09
 Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 175 TLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKA 231
           T LH+A      +IV+LLLE G DV ++ + G  T L  AA  G   IV+LLL   A
Sbjct: 30  TALHLAARNGNLEIVKLLLEHGADVNAKDKDGN-TALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 51.5 bits (124), Expect = 8e-09
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 273 GNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLL 327
           G TALH A    R +  + LL  G   +  +  DG+T LHI A  G  +++KLLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTD-EDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 51.2 bits (123), Expect = 9e-09
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 292 LLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVA 347
           LL +G         +G+TPLH+ A  G  ++V+ LL+ G +  +R+  G TA D+A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI 414
           L  AA  G +  ++ L+E G  IN  D  G TALH A+  G +EV+++L+
Sbjct: 5   LHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 289 ARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAA 348
           AR+LL  GA P+ R+  DG TPLHI  + G+ Q+V++LL+ GA+  + +K GKT  ++A 
Sbjct: 98  ARILLTGGADPNCRD-YDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAE 156

Query: 349 ECGHSRLFDAL 359
           E G   +   L
Sbjct: 157 ENGFREVVQLL 167

Length = 664

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 41/176 (23%), Positives = 62/176 (35%), Gaps = 45/176 (25%)

Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGC----STPLEAAAAAGEALIVELLLA 228
           G T LH+A  ++  +IV+LLLE G  V +  R        +    +   GE+        
Sbjct: 128 GITALHLAAHRQNYEIVKLLLERGASVPA--RACGDFFVKSQGVDSFYHGES-------- 177

Query: 229 RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAV------- 281
                         P++ A   G   ++ LL    A++      GNT LHL V       
Sbjct: 178 --------------PLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKA 223

Query: 282 --EDRRRDCARLLLANGARPD-------IRNARDGDTPLHITASLGYEQMVKLLLQ 328
             E+         L+   +         I N   G TPL + A  G   + +L L 
Sbjct: 224 EYEELSCQMYNFALSLLDKLRDSKELEVILN-HQGLTPLKLAAKEGRIVLFRLKLA 278

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 426 DGYTALHCAVESGHTDVTELLVKKGADVEART 457
           DG T LH A  +GH +V +LL++ GADV AR 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 20/56 (35%), Positives = 30/56 (53%)

Query: 225 LLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLA 280
           LL         ++ +   P+HLA + G LE+++ LL  G ++N    DG TAL LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 48.3 bits (116), Expect = 6e-08
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 393 HGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE 425
            G T LH A+  G +EVV++L++ G DV+A+D+
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 258 LLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHI 313
           LL     ++NA   +GNT LHLA +    +  + LL  G   ++R++ DG T L +
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDS-DGLTALDL 55

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 54.7 bits (131), Expect = 9e-08
 Identities = 24/84 (28%), Positives = 49/84 (58%)

Query: 370 RKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYT 429
           ++ E+   + L+E GA +N KD++  T +H A+ +G  ++V +L+  G DV+    D  +
Sbjct: 154 QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLS 213

Query: 430 ALHCAVESGHTDVTELLVKKGADV 453
            L CAV+S + D  + ++   +++
Sbjct: 214 VLECAVDSKNIDTIKAIIDNRSNI 237

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 413 LIDKG-IDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
           L++ G ID++A D +G T LH A + G  ++ + L+K G D+  R S  ++ + +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 15/135 (11%)

Query: 244 IHLALRGGHLEVLKLLLIKGANVNA-------LTKDGNTALHLAVE----DRRRDCARLL 292
           +H   R G   V  LL  K A  +          + G   +H+       D +    +LL
Sbjct: 21  LHYLCRNG--GVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKL-KLL 77

Query: 293 LANGARPDIRNARDGDTPLHITA-SLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECG 351
           +  GA  + +    G+TPLHI   +  YE    L  Q G N  I N + KT Y VA E  
Sbjct: 78  MEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERH 137

Query: 352 HSRLFDALKLGDSLC 366
            +++ + L+   + C
Sbjct: 138 DAKMMNILRAKGAQC 152

Length = 154

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 306 DGDTPLHITASLGYEQMVKLLLQKGANKYIRNK 338
           DG+TPLH+ A  G+ ++VKLLL+ GA+   R+K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 8/95 (8%)

Query: 380 LIEAGAAINGKDLHGWTAL-----HRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCA 434
            I  GA +NG D    T L     +   +K  +++V++LI+ G D++ K+ DG T L+C 
Sbjct: 57  FINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCL 116

Query: 435 VESGHTDVTELL---VKKGADVEARTSKNVSPMQI 466
           + +G+ +  E+L   ++ GAD         + +Q+
Sbjct: 117 LSNGYINNLEILLFMIENGADTTLLDKDGFTMLQV 151

Length = 489

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 51/265 (19%), Positives = 83/265 (31%), Gaps = 72/265 (27%)

Query: 244 IHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR---DCARLLLAN---GA 297
              A+   +LE+ +LLL            G+T LH    +           LLA      
Sbjct: 57  FVAAIENENLELTELLLNLSCRGAV----GDTLLHAISLEYVDAVEAILLHLLAAFRKSG 112

Query: 298 RPDIRNARDGD------TPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECG 351
             ++ N +         T LH+ A     ++VKLLL++GA              V A   
Sbjct: 113 PLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGA-------------SVPARA- 158

Query: 352 HSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVR 411
               F   +  DS       GE       + A A +    +                 V 
Sbjct: 159 CGDFFVKSQGVDSF----YHGESP-----LNAAACLGSPSI-----------------VA 192

Query: 412 MLIDKGIDVDAKDEDGYTALH-CAVESGHTDVTELLVK------KGADVEARTSKNV--- 461
           +L +   D+   D  G T LH   +E+      E L             + R SK +   
Sbjct: 193 LLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVI 252

Query: 462 ------SPMQIAECLHYAGISRILM 480
                 +P+++A       + R+ +
Sbjct: 253 LNHQGLTPLKLAAKEGRIVLFRLKL 277

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 51.5 bits (123), Expect = 6e-07
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 23/140 (16%)

Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKG---------- 417
           A R G+ + ++  I+ GA IN  +      L  A   G  +++++LID G          
Sbjct: 42  AIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPC 101

Query: 418 -------------IDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPM 464
                        IDV+ KD +  T LH A++ G  +  ++L + GADV         P+
Sbjct: 102 IEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPI 161

Query: 465 QIAECLHYAGISRILMHGGA 484
            IA   ++  I ++L+  GA
Sbjct: 162 HIAIKHNFFDIIKLLLEKGA 181

Length = 434

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 45.2 bits (108), Expect = 7e-07
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 272 DGNTALHLAVEDRRRDCARLLLANGARPDIRN 303
           DGNT LHLA  +   +  +LLL  GA  + R+
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 51.2 bits (123), Expect = 8e-07
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 12/123 (9%)

Query: 379 RLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESG 438
            +I      +         L+ A     I+VV++L+D G D+++  ++  T LH      
Sbjct: 20  YIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIK 79

Query: 439 H--TDVTE---LLVKKGADVEARTSKNVSPMQIA--ECLHYAGISRILMHGGA-----TK 486
           +  TDV E   LL++ GA+V A  +  ++P+  A  +  +   I   L+  GA       
Sbjct: 80  YNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNS 139

Query: 487 DGI 489
           DG 
Sbjct: 140 DGE 142

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 379 RLIEAGAAINGKDLHGWTALH-----RASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHC 433
            L++ GA IN    +  T LH     + +     E+V++L++ G +V+A D +G T L  
Sbjct: 53  ILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLY 112

Query: 434 AV--ESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
           A+  +S    + E L+  GA+V  + S   +       LH  
Sbjct: 113 AISKKSNSYSIVEYLLDNGANVNIKNSDGENL------LHLY 148

Length = 422

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 49.4 bits (118), Expect = 9e-07
 Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 24/165 (14%)

Query: 308 DTPLHITASLGY--EQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSL 365
           +TP+           +++K L++ GA+      + KT  +       S L   L    ++
Sbjct: 52  ETPIFSCLEKDKVNVEILKFLIENGADV-----NFKTRDN-----NLSALHHYLSFNKNV 101

Query: 366 CVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHR--ASFKGKIEVVRMLIDKGIDVDAK 423
                  E   ++ LI++G++I  +D  G   LH    +F  +I V+++LID G+    K
Sbjct: 102 -------EPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNK 154

Query: 424 DEDGYTALHCAVESGHTD--VTELLVKKGADVEARTSKNVSPMQI 466
           D D    L+  +   H+D  + + L   G D+        +   +
Sbjct: 155 DFDNNNILYSYILF-HSDKKIFDFLTSLGIDINETNKSGYNCYDL 198

Length = 209

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           +  D  G+T LHIA A     +V++LLEFG D     + G  TPLE A   G   +V+LL
Sbjct: 109 NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDG-KTPLELAEENGFREVVQLL 167

Query: 227 L 227
            
Sbjct: 168 S 168

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL 359
           G T LH  A  G  ++VK LL+KG +    ++ G TA  +AAE G+  +   L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 43.3 bits (103), Expect = 4e-06
 Identities = 20/29 (68%), Positives = 23/29 (79%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTK 271
           P+HLA R GHLEV+KLLL  GA+VNA  K
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 16/30 (53%), Positives = 22/30 (73%)

Query: 426 DGYTALHCAVESGHTDVTELLVKKGADVEA 455
           DG T LH A E+G+ +V +LL+ KGAD+ A
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 3/147 (2%)

Query: 213 AAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKD 272
             A+ G A ++E LL  K   +  ++    P+H+A   G+ + + +LL    NV+    +
Sbjct: 531 TVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDAN 590

Query: 273 GNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGAN 332
           GNTAL  A+  +     R+L    +   I +       L   A       +K LL++G N
Sbjct: 591 GNTALWNAISAKHHKIFRILYHFAS---ISDPHAAGDLLCTAAKRNDLTAMKELLKQGLN 647

Query: 333 KYIRNKSGKTAYDVAAECGHSRLFDAL 359
               +  G TA  VA    H  +   L
Sbjct: 648 VDSEDHQGATALQVAMAEDHVDMVRLL 674

Length = 823

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 406 KIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGH---TDVTELLVKKGADVEARTSKNVS 462
            +E VR L+  G DV+ + E G T LH  +        D+  LL++ GADV A      +
Sbjct: 26  TVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFT 85

Query: 463 PM 464
           P+
Sbjct: 86  PL 87

Length = 471

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 48.4 bits (115), Expect = 7e-06
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 245 HLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNA 304
            LA  G  +   ++LL  GA+ N    DG T LH+A  +      R+LL  GA P + + 
Sbjct: 88  QLAASGDAVGA-RILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD- 145

Query: 305 RDGDTPLHITASLGYEQMVKLLL 327
           +DG TPL +    G+ ++V+LL 
Sbjct: 146 KDGKTPLELAEENGFREVVQLLS 168

Length = 664

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 48.0 bits (114), Expect = 9e-06
 Identities = 22/71 (30%), Positives = 38/71 (53%)

Query: 410 VRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAEC 469
            R+L+  G D + +D DG T LH A  +GH  V  +L++ GAD         +P+++AE 
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157

Query: 470 LHYAGISRILM 480
             +  + ++L 
Sbjct: 158 NGFREVVQLLS 168

Length = 664

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 20/165 (12%)

Query: 185 RPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGE------ALIVELLLARKASTERSET 238
           +  IV+LL++ G DV  +G     TPL A     E        IV+LLL   A       
Sbjct: 49  KIKIVKLLIDNGADVNYKGY--IETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTF 106

Query: 239 STWGPIHLALRGGH---LEVLKLLLIKGANVNALTKD--GNTALHLAVED--RRRDCARL 291
           +   PI   +   +    ++L+ LL KG NVN + K+  G   LH+ +E    ++D  ++
Sbjct: 107 NGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDV-KNSRGYNLLHMYLESFSVKKDVIKI 165

Query: 292 LLANGARPDIRNARDGDTPLHI----TASLGYEQMVKLLLQKGAN 332
           LL+ G     + +  G TP++I       +   +++K L++KG N
Sbjct: 166 LLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN 210

Length = 494

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 34/86 (39%)

Query: 175 TLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTE 234
           T LH A    R ++V+ LLE G D+      G +                          
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNT-------------------------- 36

Query: 235 RSETSTWGPIHLALRGGHLEVLKLLL 260
                    +H+A   G+LEVLKLLL
Sbjct: 37  --------ALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 426 DGYTALHCAVESGHTDVTELLVKKGADVEA 455
           DG T LH A  +G+ ++ +LL++ GAD+ A
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 39/151 (25%), Positives = 54/151 (35%), Gaps = 31/151 (20%)

Query: 209 TPLEAAAAAGEAL-IVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGAN-- 265
           + L  AA   E L + ELLL         +T     +H         V  +LL   A   
Sbjct: 54  SALFVAAIENENLELTELLLNLSCRGAVGDTL----LHAISLEYVDAVEAILLHLLAAFR 109

Query: 266 -------VNALTKD----GNTALHLAVEDRRRDCARLLLANGARPDIR------------ 302
                   N         G TALHLA   +  +  +LLL  GA    R            
Sbjct: 110 KSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGV 169

Query: 303 -NARDGDTPLHITASLGYEQMVKLLLQKGAN 332
            +   G++PL+  A LG   +V LL +  A+
Sbjct: 170 DSFYHGESPLNAAACLGSPSIVALLSEDPAD 200

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 53/214 (24%), Positives = 84/214 (39%), Gaps = 29/214 (13%)

Query: 259 LLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLG 318
           LL +G + N    DGN  LH+A +        +LL +GA P+  + +   TPL+  +   
Sbjct: 58  LLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACD-KQHKTPLYYLSGTD 116

Query: 319 YE--QMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRT 376
            E  + + LL+Q GA   I N   +        CG               +A      R 
Sbjct: 117 DEVIERINLLVQYGAK--INNSVDEEG------CGP-------------LLACTDPSERV 155

Query: 377 MQRLIEAGAAINGKDLHGWTALHR--ASFKGKIEVVRMLIDKGIDVDAKDEDGYTALH-- 432
            ++++  G      D  G   +HR   S   K   +  ++  GI     D DG T LH  
Sbjct: 156 FKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIV 215

Query: 433 CAVESGHTDVTELLVKKGADVEARTSKNVSPMQI 466
           C+    + D+  LL+    DV  +     SP+ +
Sbjct: 216 CSKTVKNVDIINLLLPS-TDVNKQNKFGDSPLTL 248

Length = 446

>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 387 INGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESG-------- 438
           IN  D  G T L+RA + G I++V  L++ G +V+A   +GYT L  AV+ G        
Sbjct: 214 INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRET 273

Query: 439 HTDVTELLVKKGADVE 454
           H  + E+L+++   ++
Sbjct: 274 HLKILEILLREPLSID 289

Length = 437

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 46.2 bits (109), Expect = 4e-05
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 11/92 (11%)

Query: 386 AINGKDLHGWTALHRA-----SFKGKIE-----VVRMLIDKGIDVDAKDEDGYTALHCAV 435
           AI+G D+H +  ++ +       K +I+     +  ML++ G DV+AKD    T +H A 
Sbjct: 128 AISGNDIH-YDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAA 186

Query: 436 ESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
           E G+  +  LL+  GADV      ++S ++ A
Sbjct: 187 ERGNAKMVNLLLSYGADVNIIALDDLSVLECA 218

Length = 682

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 13/111 (11%)

Query: 339 SGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTAL 398
           S K A+      GHS L+ A+              VR +  L+ AGA  N   L     L
Sbjct: 19  SSKDAFKADVH-GHSALYYAIA----------DNNVRLVCTLLNAGALKN--LLENEFPL 65

Query: 399 HRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKK 449
           H+A+     ++V++L+  G+D    D+ G TAL+ AV+SG+    +L VKK
Sbjct: 66  HQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK 116

Length = 284

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDV 199
           ++ D  G T LH+A      +IV+LLLE G D+
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 45.8 bits (108), Expect = 5e-05
 Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 21/194 (10%)

Query: 322 MVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFD-ALKLG--------DSLCV---AA 369
           + ++LL+ GA+   ++    T    AAE G++++ +  L  G        D L V   A 
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219

Query: 370 RKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYT 429
               + T++ +I+  + IN  DL    +L +A     +E   +L D G  V++ D+   T
Sbjct: 220 DSKNIDTIKAIIDNRSNINKNDL----SLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNT 275

Query: 430 ALHCAVESGH-TDVTELLVKKGADVEARTSKNVSPMQIAECLHY--AGISRILMHGGATK 486
            LH A ++   + +   L+++GADV A+  K  +P+ +     Y    I  ++M G    
Sbjct: 276 PLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVN 335

Query: 487 --DGIQQTNLRQVS 498
             D +  T L Q S
Sbjct: 336 AADRLYITPLHQAS 349

Length = 682

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 393 HGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
            G T LH A+  G +EVV++L+DKG D++A
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.8 bits (94), Expect = 7e-05
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 172 QGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGR 204
            G T LH+A      ++V+LLLE G DV ++ +
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 7e-05
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGPDV 199
           G T LH+A      ++V+LLLE G D+
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 427 GYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
           G TALH A  SG  ++ + L++KG D+        + + IA
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIA 41

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 170 DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAA 214
           D  G T LH+A      ++VQ LL+ G D+  +   G  T L+ A
Sbjct: 13  DGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGL-TALDLA 56

Length = 56

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 306 DGDTPLHITASLGYEQMVKLLLQKGANKYI 335
           DG TPLH+ A  G  ++VKLLL KGA+   
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 393 HGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
            G T LH A+  G +E+V++L++ G D++A
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNA 268
           P+HLA   G+LEV+KLLL KGA++NA
Sbjct: 5   PLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 15/90 (16%)

Query: 22 KCSGELTLRNVMHTM-------------PVAFRIQPTNKARYTVKPQSGIISPLATLSVE 68
          + S + T    +                PV F+++ T    Y V+P  G+I P++T+ VE
Sbjct: 4  EISPQTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVE 63

Query: 69 IAYHLPPGSVLPDSFPHCDDSFLLHSVVVP 98
          +          PD    C D FL+ S    
Sbjct: 64 VILQGLTEEPAPDF--KCRDKFLIQSYRFD 91

Length = 242

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 60/194 (30%)

Query: 243 PIHLAL--RGGHLEVLKLLLIKGANVNALTKDGN-TALHLAV---EDRRRDCARLLLANG 296
           PI   L     ++E+LK L+  GA+VN  T+D N +ALH  +   ++   +  ++L+ +G
Sbjct: 54  PIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSG 113

Query: 297 ARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLF 356
           +     +  DG   LH+                    Y+ N + +               
Sbjct: 114 SSITEEDE-DGKNLLHM--------------------YMCNFNVR--------------- 137

Query: 357 DALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHR-ASFKGKIEVVRMLID 415
                            +  ++ LI++G +   KD      L+    F    ++   L  
Sbjct: 138 -----------------INVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTS 180

Query: 416 KGIDVDAKDEDGYT 429
            GID++  ++ GY 
Sbjct: 181 LGIDINETNKSGYN 194

Length = 209

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 4/96 (4%)

Query: 254 EVLKLLLIKGANVNALTKDGNTALHLAVED--RRRDCARLLLANGARPDIRNARDGDTPL 311
           E+LK+L+  G+++    +DG   LH+ + +   R +  +LL+ +G    +    D +  L
Sbjct: 104 EILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF-LNKDFDNNNIL 162

Query: 312 HITASLGYEQ-MVKLLLQKGANKYIRNKSGKTAYDV 346
           +       ++ +   L   G +    NKSG   YD+
Sbjct: 163 YSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDL 198

Length = 209

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 272 DGNTALHLAVEDRRRDCARLLLANGARPDI 301
           DG T LHLA E+   +  +LLL  GA  + 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 172 QGQTLLHIAIAQRRPDIVQLLLEFGPDVE 200
            G+T LH+A      ++V+LLL+ G D+ 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 272 DGNTALHLAVEDRRRDCARLLLANGARPDI 301
           DGNT LHLA  +   +  +LLL +GA  + 
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 8/97 (8%)

Query: 387 INGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAV-ESGHTDVTEL 445
           IN  D  G T LH+A    K  +V +L++ G DV+ +  +GYT +  A+ ES + ++ ++
Sbjct: 445 INMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKM 504

Query: 446 LV--KKGADVEARTSKNVSPM-----QIAECLHYAGI 475
           L+  K   D    + + +S +      I +C+ YA I
Sbjct: 505 LLCHKPTLDCVIDSLREISNIVDNAYAIKQCIKYAMI 541

Length = 661

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 15/27 (55%), Positives = 21/27 (77%)

Query: 306 DGDTPLHITASLGYEQMVKLLLQKGAN 332
           DG+TPLH+ A  G  ++VKLLL+ GA+
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	541
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.98
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.95
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.94
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
KOG0514	452	consensus Ankyrin repeat protein [General function	99.91
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.89
PHA02741	169	hypothetical protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.85
PHA02741	169	hypothetical protein; Provisional	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.84
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.8
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.78
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.76
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.73
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.7
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.7
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.67
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.57
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.55
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.54
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.51
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.51
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.5
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.49
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.48
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.45
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.42
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.41
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.34
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.96
PF00635	109	Motile_Sperm: MSP (Major sperm protein) domain; In	98.9
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.87
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.85
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.83
PF13606	30	Ank_3: Ankyrin repeat	98.83
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.8
PF13606	30	Ank_3: Ankyrin repeat	98.78
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.78
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.74
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.73
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.71
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.67
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.64
KOG0522	560	consensus Ankyrin repeat protein [General function	98.57
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.54
KOG0439	218	consensus VAMP-associated protein involved in inos	98.52
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.51
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.39
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.3
KOG2384	223	consensus Major histocompatibility complex protein	98.29
KOG0511	516	consensus Ankyrin repeat protein [General function	98.28
KOG2384	223	consensus Major histocompatibility complex protein	98.28
COG5066	242	SCS2 VAMP-associated protein involved in inositol	98.24
KOG0522	560	consensus Ankyrin repeat protein [General function	98.17
KOG0511	516	consensus Ankyrin repeat protein [General function	97.98
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.93
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.85
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.83
KOG2505	591	consensus Ankyrin repeat protein [General function	97.13
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.91
KOG2505	591	consensus Ankyrin repeat protein [General function	96.77
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.75
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.72
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.52
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.4
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.33
PF14874	102	PapD-like: Flagellar-associated PapD-like	94.4
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.54
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.8
PLN03218	1060	maturation of RBCL 1; Provisional	92.44
PLN03218	1060	maturation of RBCL 1; Provisional	90.95

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-50  Score=439.08  Aligned_cols=372  Identities=23%  Similarity=0.314  Sum_probs=321.7

Q ss_pred             cCcHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHH---------------------------------
Q 037006          135 VGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAI---------------------------------  181 (541)
Q Consensus       135 ~g~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~---------------------------------  181 (541)
                      .+.||||+|+..|+.|+|+++++..+.   .....|..|.||||+|+                                 
T Consensus        40 ~~~t~LH~A~~~g~~e~V~~ll~~~~~---~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  116 (682)
T PHA02876         40 IPFTAIHQALQLRQIDIVEEIIQQNPE---LIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHK  116 (682)
T ss_pred             ccchHHHHHHHHHhhhHHHHHHHhCcc---cchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHH
Confidence            578999999999999999999998653   24566788999999666                                 


Q ss_pred             -------------------------------------HcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHH
Q 037006          182 -------------------------------------AQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVE  224 (541)
Q Consensus       182 -------------------------------------~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~  224 (541)
                                                           ..|+.+++++|++.|++++.++.. |.||||+|+..|+.++|+
T Consensus       117 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~-G~TpLh~Aa~~G~~~iv~  195 (682)
T PHA02876        117 LDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIY-CITPIHYAAERGNAKMVN  195 (682)
T ss_pred             HHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCCCCCCCCC-CCCHHHHHHHCCCHHHHH
Confidence                                                 456788889999999999888776 889999999999999999


Q ss_pred             HHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCC
Q 037006          225 LLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNA  304 (541)
Q Consensus       225 ~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~  304 (541)
                      +|+++|++++..+..|.||||+|+..|+.+++++|++.+.+++.    +.++++.|+..++.+++++|++.|++++..+ 
T Consensus       196 ~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~----~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d-  270 (682)
T PHA02876        196 LLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINK----NDLSLLKAIRNEDLETSLLLYDAGFSVNSID-  270 (682)
T ss_pred             HHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC----CcHHHHHHHHcCCHHHHHHHHHCCCCCCCCC-
Confidence            99999999888888889999999999999999988888776653    3478888888888888888888898888776 


Q ss_pred             CCCCcHHHHHHHcCCH-HHHHHHHHcCCCccccccCCCchhHHHHHcC-CHHHHHHhhc------------CCchHHHHh
Q 037006          305 RDGDTPLHITASLGYE-QMVKLLLQKGANKYIRNKSGKTAYDVAAECG-HSRLFDALKL------------GDSLCVAAR  370 (541)
Q Consensus       305 ~~g~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g-~~~~~~~l~~------------~~~l~~a~~  370 (541)
                      ..|.||||+|+..++. +++++|++.|++++..|..|.||||+|+..| ..++++.|..            .++++.|+.
T Consensus       271 ~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~  350 (682)
T PHA02876        271 DCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQAST  350 (682)
T ss_pred             CCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHH
Confidence            6799999999998886 6899999999999999999999999999998 4777777632            356888877


Q ss_pred             h-CCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCC-HHHHHHHHH
Q 037006          371 K-GEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGH-TDVTELLVK  448 (541)
Q Consensus       371 ~-~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~-~~~v~~Ll~  448 (541)
                      . +..++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..++++|++
T Consensus       351 ~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~  430 (682)
T PHA02876        351 LDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLID  430 (682)
T ss_pred             hCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHh
Confidence            4 57889999999999999999999999999999999999999999999999999999999999998765 567999999


Q ss_pred             CCCCCcccCCCCCCHHHHHHHcC-cHHHHHHHHhCCCCCCCCcccccchhhhhhcCCCccccccccccCc
Q 037006          449 KGADVEARTSKNVSPMQIAECLH-YAGISRILMHGGATKDGIQQTNLRQVSIQFGNGKVGRDQMEGKFGM  517 (541)
Q Consensus       449 ~ga~~~~~~~~g~t~l~~A~~~~-~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  517 (541)
                      +|++++.+|..|+||||+|+..+ +.+++++|+++|++++..+..+.+++..+...+  +.+..+..++.
T Consensus       431 ~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~--~~v~~Ll~~~a  498 (682)
T PHA02876        431 RGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH--GIVNILLHYGA  498 (682)
T ss_pred             CCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC--CHHHHHHHCCC
Confidence            99999999999999999999876 689999999999999999999999999887644  34555555553

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=6.5e-49  Score=400.64  Aligned_cols=327  Identities=21%  Similarity=0.240  Sum_probs=291.9

Q ss_pred             cHHHHHHHH--cCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHH
Q 037006          137 SPVLVLLVK--DGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAA  214 (541)
Q Consensus       137 ~~~l~~a~~--~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A  214 (541)
                      .++||.++.  .++.++++.|++++..    ++.+|..|.||||+|+..|+.++|++|+++|++++.++.. |.||||+|
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gad----vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~-g~TpLh~A  112 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYS----PNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQ-HKTPLYYL  112 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCC----CCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCC-CCCHHHHH
Confidence            578887664  4478999999998743    7889999999999999999999999999999999988887 99999999


Q ss_pred             HHcC--CHHHHHHHHHCCCCCCC-CCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCC--HHHH
Q 037006          215 AAAG--EALIVELLLARKASTER-SETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRR--RDCA  289 (541)
Q Consensus       215 ~~~g--~~~iv~~Ll~~g~~~~~-~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~--~~~v  289 (541)
                      +..+  ..+++++|+++|++++. .+..|.|||| |+..|+.+++++|++.|++++..|..|+||||+|+..++  .+++
T Consensus       113 ~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v  191 (446)
T PHA02946        113 SGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTI  191 (446)
T ss_pred             HHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHH
Confidence            8876  48999999999999995 6889999997 667799999999999999999999999999999987654  6899


Q ss_pred             HHHHHCCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCccccccCCCchhHHHHHcCCH-HHHHHhhcC----
Q 037006          290 RLLLANGARPDIRNARDGDTPLHITASLG--YEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHS-RLFDALKLG----  362 (541)
Q Consensus       290 ~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~-~~~~~l~~~----  362 (541)
                      ++|++.|++++..+ ..|.||||+|+..|  +.+++++|++ |++++.+|..|.||||+|+..++. ++++.|...    
T Consensus       192 ~~Ll~~Gadin~~d-~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~  269 (446)
T PHA02946        192 SWMMKLGISPSKPD-HDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVI  269 (446)
T ss_pred             HHHHHcCCCCcccC-CCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCC
Confidence            99999999999888 78999999999986  7899999995 899999999999999999999884 777776432    


Q ss_pred             --CchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCH
Q 037006          363 --DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHT  440 (541)
Q Consensus       363 --~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~  440 (541)
                        ..+..++..+..++++.+..+|.      ..|.||||+|+..|+.++|++|+++|+       .|.||||+|+..++.
T Consensus       270 ~~~~~~~a~~~~~~~~~e~l~~~g~------~~~~TpLh~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A~~~~~~  336 (446)
T PHA02946        270 TDQTVNICIFYDRDDVLEIINDKGK------QYDSTDFKMAVEVGSIRCVKYLLDNDI-------ICEDAMYYAVLSEYE  336 (446)
T ss_pred             CCcHHHHHHHcCchHHHHHHHHcCc------ccCCCHHHHHHHcCCHHHHHHHHHCCC-------ccccHHHHHHHhCHH
Confidence              34677888889999999988774      357899999999999999999999874       478999999999999


Q ss_pred             HHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q 037006          441 DVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGAT  485 (541)
Q Consensus       441 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~  485 (541)
                      +++++|+.+|++++.. ..|.|||++|+..++.++++.|+.+..+
T Consensus       337 ~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~~~~  380 (446)
T PHA02946        337 TMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILSKLMLHNPT  380 (446)
T ss_pred             HHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHHHHHhcCcc
Confidence            9999999999999995 5899999999999999999999986544

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1e-47  Score=391.85  Aligned_cols=336  Identities=17%  Similarity=0.185  Sum_probs=293.1

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHH--cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc
Q 037006          140 LVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIA--QRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAA  217 (541)
Q Consensus       140 l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~  217 (541)
                      +..++..++.+.++.+++...+         ..+.++||.++.  .++.++|++|+++|++++.++.. |.||||+|+..
T Consensus        13 l~~~~~~~n~~~~~~~l~~~~~---------~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~-G~TpLh~Aa~~   82 (446)
T PHA02946         13 LYAKYNSKNLDVFRNMLQAIEP---------SGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDD-GNYPLHIASKI   82 (446)
T ss_pred             HHHHHccCcHHHHHHHHhccCC---------CCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCC-CCCHHHHHHHc
Confidence            5678888999999999976432         235799998774  44679999999999999998877 99999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCC--HHHHHHHHHcCCCCCC-CCCCCChHHHHHHHhCCHHHHHHHHH
Q 037006          218 GEALIVELLLARKASTERSETSTWGPIHLALRGGH--LEVLKLLLIKGANVNA-LTKDGNTALHLAVEDRRRDCARLLLA  294 (541)
Q Consensus       218 g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~--~~iv~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~  294 (541)
                      |+.+++++|+++|++++.++..|+||||+|+..++  .+++++|+++|++++. .|.+|.|||+ |+..++.+++++|++
T Consensus        83 g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~  161 (446)
T PHA02946         83 NNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMS  161 (446)
T ss_pred             CCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHh
Confidence            99999999999999999999999999999988764  7999999999999995 6899999997 677899999999999


Q ss_pred             CCCCCCccCCCCCCcHHHHHHHcCC--HHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhC
Q 037006          295 NGARPDIRNARDGDTPLHITASLGY--EQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKG  372 (541)
Q Consensus       295 ~g~~~~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~  372 (541)
                      .|++++..+ ..|.||||+|+..++  .+++++|++.|++++..|..|.||||+|+..|.                   +
T Consensus       162 ~gad~~~~d-~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~-------------------~  221 (446)
T PHA02946        162 IGFEARIVD-KFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTV-------------------K  221 (446)
T ss_pred             ccccccccC-CCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC-------------------C
Confidence            999999888 789999999987654  689999999999999999999999999998763                   1


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCC-HHHHHHHHHcCCCCCC--------------------C-CCCCChH
Q 037006          373 EVRTMQRLIEAGAAINGKDLHGWTALHRASFKGK-IEVVRMLIDKGIDVDA--------------------K-DEDGYTA  430 (541)
Q Consensus       373 ~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~-~~~v~~Ll~~g~d~~~--------------------~-d~~g~tp  430 (541)
                      +.+++++|++ |+++|.+|..|.||||+|+..++ .+++++|+++|++++.                    . +..|.||
T Consensus       222 ~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~Tp  300 (446)
T PHA02946        222 NVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTD  300 (446)
T ss_pred             cHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCH
Confidence            2355777774 89999999999999999999988 5899999999875421                    1 2357899


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCCcccccchhhhhhcCCCccccc
Q 037006          431 LHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNGKVGRDQ  510 (541)
Q Consensus       431 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (541)
                      ||+|+++|+.++|++|+++|+       .|+||||+|+..++.+++++|+.+|++.+.. ..+.+++++++..+..+..+
T Consensus       301 Lh~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~  372 (446)
T PHA02946        301 FKMAVEVGSIRCVKYLLDNDI-------ICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILS  372 (446)
T ss_pred             HHHHHHcCCHHHHHHHHHCCC-------ccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHH
Confidence            999999999999999999975       4689999999999999999999999999874 67999999999988888776


Q ss_pred             ccccc
Q 037006          511 MEGKF  515 (541)
Q Consensus       511 ~~~~~  515 (541)
                      .+...
T Consensus       373 ~ll~~  377 (446)
T PHA02946        373 KLMLH  377 (446)
T ss_pred             HHHhc
Confidence            65553

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-46  Score=407.87  Aligned_cols=339  Identities=27%  Similarity=0.319  Sum_probs=307.8

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHH
Q 037006          137 SPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAA  216 (541)
Q Consensus       137 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~  216 (541)
                      .++++.++..|+.++++.|++.+..    ++.+|..|.||||+||..|+.++|++|+++|++++..+.. |.||||+|+.
T Consensus       146 ~~~l~~~i~~~~~~i~k~Ll~~Gad----vn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~-g~t~L~~A~~  220 (682)
T PHA02876        146 MKLIKERIQQDELLIAEMLLEGGAD----VNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALD-DLSVLECAVD  220 (682)
T ss_pred             hHHHHHHHHCCcHHHHHHHHhCCCC----CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCC-CCCHHHHHHH
Confidence            4678899999999999999998753    7788999999999999999999999999999999988776 8999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCH-HHHHHHHHC
Q 037006          217 AGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR-DCARLLLAN  295 (541)
Q Consensus       217 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~-~~v~~Ll~~  295 (541)
                      .|+.+++++|++.+.+++.    +.++|+.|+..++.+++++|++.|++++..|..|.||||+|+..++. +++++|++.
T Consensus       221 ~~~~~ivk~Ll~~~~~~~~----~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~  296 (682)
T PHA02876        221 SKNIDTIKAIIDNRSNINK----NDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLER  296 (682)
T ss_pred             cCCHHHHHHHHhcCCCCCC----CcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHC
Confidence            9999999999998887754    34689999999999999999999999999999999999999999986 689999999


Q ss_pred             CCCCCccCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCccccccCCCchhHHHHHcC-CHHHHHHhh------------c
Q 037006          296 GARPDIRNARDGDTPLHITASLG-YEQMVKLLLQKGANKYIRNKSGKTAYDVAAECG-HSRLFDALK------------L  361 (541)
Q Consensus       296 g~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g-~~~~~~~l~------------~  361 (541)
                      |++++..+ ..|.||||+|+..| +.+++++|++.|++++..|..|.||||+|+..+ +.+++..+.            .
T Consensus       297 gadin~~d-~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G  375 (682)
T PHA02876        297 GADVNAKN-IKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCD  375 (682)
T ss_pred             CCCCCCcC-CCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCC
Confidence            99999887 78999999999998 589999999999999999999999999999865 566666662            2


Q ss_pred             CCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCC-HHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC-C
Q 037006          362 GDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGK-IEVVRMLIDKGIDVDAKDEDGYTALHCAVESG-H  439 (541)
Q Consensus       362 ~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~-~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g-~  439 (541)
                      .++++.|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..++++|++.|+++|.+|..|+||||+|+..| +
T Consensus       376 ~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~  455 (682)
T PHA02876        376 KTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCK  455 (682)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCc
Confidence            367999999999999999999999999999999999999998765 57799999999999999999999999999977 6


Q ss_pred             HHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCC
Q 037006          440 TDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKD  487 (541)
Q Consensus       440 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~  487 (541)
                      .+++++|+++|++++.+|..|.||+++|+..+  +++++|+.+|++..
T Consensus       456 ~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~--~~v~~Ll~~~a~~~  501 (682)
T PHA02876        456 LDVIEMLLDNGADVNAINIQNQYPLLIALEYH--GIVNILLHYGAELR  501 (682)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC--CHHHHHHHCCCCCC
Confidence            89999999999999999999999999999765  68999999999865

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-46  Score=385.63  Aligned_cols=313  Identities=24%  Similarity=0.379  Sum_probs=283.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc
Q 037006          138 PVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAA  217 (541)
Q Consensus       138 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~  217 (541)
                      ..|..|+..|+.+.++++++....   .++..+..|.||||.|+..|+.++|++|++.|++++..+.. +.|||+.|+..
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~---~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~-~~t~L~~A~~~   78 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGN---CINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTK-IPHPLLTAIKI   78 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHc
Confidence            367889999999999999987653   25667788999999999999999999999999999988776 89999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCC
Q 037006          218 GEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGA  297 (541)
Q Consensus       218 g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~  297 (541)
                      |+.+++++|+++|+++...          +....+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|+
T Consensus        79 ~~~~iv~~Ll~~g~~~~~~----------~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~ga  148 (434)
T PHA02874         79 GAHDIIKLLIDNGVDTSIL----------PIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGA  148 (434)
T ss_pred             CCHHHHHHHHHCCCCCCcc----------hhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCC
Confidence            9999999999999876432          233457899999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHH
Q 037006          298 RPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTM  377 (541)
Q Consensus       298 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~  377 (541)
                      +++..+ ..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+                     ++
T Consensus       149 d~n~~d-~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~---------------------iv  206 (434)
T PHA02874        149 DVNIED-DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYA---------------------CI  206 (434)
T ss_pred             CCCCcC-CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH---------------------HH
Confidence            999887 78999999999999999999999999999999999999999998776654                     58


Q ss_pred             HHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC-CHHHHHHHHHCCCCCccc
Q 037006          378 QRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESG-HTDVTELLVKKGADVEAR  456 (541)
Q Consensus       378 ~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g-~~~~v~~Ll~~ga~~~~~  456 (541)
                      ++|+++|++++.++..|.||||.|+..+. +.+++|+ .|++++.+|..|+||||+|+..+ +.+++++|+++|++++.+
T Consensus       207 ~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~  284 (434)
T PHA02874        207 KLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIK  284 (434)
T ss_pred             HHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCC
Confidence            88999999999999999999999999765 5677776 58999999999999999999876 889999999999999999


Q ss_pred             CCCCCCHHHHHHHcC-cHHHHHHHHhCCCCCCC
Q 037006          457 TSKNVSPMQIAECLH-YAGISRILMHGGATKDG  488 (541)
Q Consensus       457 ~~~g~t~l~~A~~~~-~~~i~~~Ll~~ga~~~~  488 (541)
                      |..|.|||++|+..+ ...+++.|+..++..+.
T Consensus       285 d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~~  317 (434)
T PHA02874        285 DNKGENPIDTAFKYINKDPVIKDIIANAVLIKE  317 (434)
T ss_pred             CCCCCCHHHHHHHhCCccHHHHHHHHhcCchhh
Confidence            999999999999887 78899999998876543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.2e-46  Score=392.37  Aligned_cols=328  Identities=17%  Similarity=0.194  Sum_probs=235.9

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCC-CCCCccHHHHHHH--cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCC--HH
Q 037006          147 GEMDDLREVLERSDPAWNPADSA-DAQGQTLLHIAIA--QRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGE--AL  221 (541)
Q Consensus       147 g~~~~v~~ll~~~~~~~~~~~~~-d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~--~~  221 (541)
                      ++.+++++|++.+..+   ++.. |..|.||||+|+.  +++.++|++|+++|++++.++.. |.||||+|+..|+  .+
T Consensus       153 v~leiVk~LLe~G~AD---IN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~-G~TPLH~Aa~~g~~~~e  228 (764)
T PHA02716        153 IDLDLIKYMVDVGIVN---LNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNH-LITPLHTYLITGNVCAS  228 (764)
T ss_pred             CCHHHHHHHHHCCCCC---cccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCCCHH
Confidence            4555555555544211   3333 4455555555442  23445555555555555555444 5555555555553  25


Q ss_pred             HHHHHHHCCCCCCCCCCCCchHHHH-------------------------------------HHhcCCHHHHHHHHHcCC
Q 037006          222 IVELLLARKASTERSETSTWGPIHL-------------------------------------ALRGGHLEVLKLLLIKGA  264 (541)
Q Consensus       222 iv~~Ll~~g~~~~~~~~~~~t~L~~-------------------------------------Aa~~g~~~iv~~Ll~~g~  264 (541)
                      +|++|+++|++++.++..|+||||+                                     |+..|+.+++++|++.|+
T Consensus       229 IVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GA  308 (764)
T PHA02716        229 VIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGV  308 (764)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCC
Confidence            5555555555555555555555553                                     466789999999999999


Q ss_pred             CCCCCCCCCChHHHHHHH--hCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHH--------------cCCHHHHHHHHH
Q 037006          265 NVNALTKDGNTALHLAVE--DRRRDCARLLLANGARPDIRNARDGDTPLHITAS--------------LGYEQMVKLLLQ  328 (541)
Q Consensus       265 ~~~~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~--------------~g~~~~v~~Ll~  328 (541)
                      +++.+|..|+||||+|+.  .++.+++++|++.|++++..+ ..|+||||+|+.              .++.+++++|++
T Consensus       309 dIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD-~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~  387 (764)
T PHA02716        309 KLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPD-NIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLIS  387 (764)
T ss_pred             ceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCC-CCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHH
Confidence            999999999999999875  467899999999999999887 789999999875              368999999999


Q ss_pred             cCCCccccccCCCchhHH----HHHcCCHHHHHHhhcCCc----------------------hHHHHhhCCH--------
Q 037006          329 KGANKYIRNKSGKTAYDV----AAECGHSRLFDALKLGDS----------------------LCVAARKGEV--------  374 (541)
Q Consensus       329 ~g~~~~~~~~~g~t~l~~----A~~~g~~~~~~~l~~~~~----------------------l~~a~~~~~~--------  374 (541)
                      +|++++.+|..|.||||.    |...++.+++++|.....                      ++.++..+..        
T Consensus       388 ~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~  467 (764)
T PHA02716        388 LGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDE  467 (764)
T ss_pred             CCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhh
Confidence            999999999999999994    233467788887744211                      2223322221        


Q ss_pred             ----------HHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCH-----HHHHHHHHcCCCCCCCCCCCChHHHHHHHcCC
Q 037006          375 ----------RTMQRLIEAGAAINGKDLHGWTALHRASFKGKI-----EVVRMLIDKGIDVDAKDEDGYTALHCAVESGH  439 (541)
Q Consensus       375 ----------~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~-----~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~  439 (541)
                                +++..++..+.++|..|..|+||||+|+..|+.     +++++|++.|+|+|.+|..|+||||+|+++|+
T Consensus       468 ~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~  547 (764)
T PHA02716        468 YEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNR  547 (764)
T ss_pred             hhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC
Confidence                      233344455677888888899999999988876     45599999999999999999999999998886


Q ss_pred             H-----HHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q 037006          440 T-----DVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGAT  485 (541)
Q Consensus       440 ~-----~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~  485 (541)
                      .     ++|++||++|++++..      .+++|...++.+++.+|.++|+.
T Consensus       548 ~~~~~~eIvk~LL~~ga~~~~~------~l~~~~~~~~~~~~~ll~~~~~~  592 (764)
T PHA02716        548 LSGHQWYIVKNILDKRPNVDIV------IIFLDKCYANGKFPSLLLSEDDI  592 (764)
T ss_pred             ccccHHHHHHHHHhcCCCcchH------HHHHHhhhhhhHHHHHHHHcchh
Confidence            6     8999999999888774      48888888888888888888875

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.2e-46  Score=380.64  Aligned_cols=390  Identities=16%  Similarity=0.173  Sum_probs=292.4

Q ss_pred             hhhhhhcCCcee----ecCcHHHHHHHHcC---CHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcC--CHHHHHHH
Q 037006          122 KQVFIDSGIKIM----FVGSPVLVLLVKDG---EMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQR--RPDIVQLL  192 (541)
Q Consensus       122 ~~~~~~~~~~~~----~~g~~~l~~a~~~g---~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g--~~~~v~~L  192 (541)
                      ...++..+..+.    ..|.|+||+|+..|   +.++++.||+++..    ++.+|..|+||||+|+..+  +.|+|++|
T Consensus        23 ~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAd----in~kD~~G~TPLh~Aa~~~~~~~eIv~~L   98 (672)
T PHA02730         23 IKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVE----RLCRNNEGLTPLGVYSKRKYVKSQIVHLL   98 (672)
T ss_pred             HHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCC----CcccCCCCCChHHHHHHcCCCcHHHHHHH
Confidence            344455553333    45889999999987   58999999988743    6788999999999999866  78999999


Q ss_pred             HhcCCCC--cccCCCCCCcHHHHHHH--cCCHHHHHHHHH-CCCCCCCCCC-----CCchHHHHHHhcCCHHHHHHHHHc
Q 037006          193 LEFGPDV--ESQGRCGCSTPLEAAAA--AGEALIVELLLA-RKASTERSET-----STWGPIHLALRGGHLEVLKLLLIK  262 (541)
Q Consensus       193 l~~g~~~--~~~~~~~~~t~L~~A~~--~g~~~iv~~Ll~-~g~~~~~~~~-----~~~t~L~~Aa~~g~~~iv~~Ll~~  262 (541)
                      ++.|++.  +..+.. +.+||+.++.  +++.+++++|++ .+++++....     .|.+|+++|+..++.|+|++|+++
T Consensus        99 l~~~~~~~~~~~~~~-~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~  177 (672)
T PHA02730         99 ISSYSNASNELTSNI-NDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKS  177 (672)
T ss_pred             HhcCCCCCccccccc-CCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHc
Confidence            9996644  554443 7788888887  889999999996 6677765532     678899999999999999999999


Q ss_pred             CCCCC-------CCCCCCChH-HHHH------HHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHH--HHHcCCHHHHHHH
Q 037006          263 GANVN-------ALTKDGNTA-LHLA------VEDRRRDCARLLLANGARPDIRNARDGDTPLHI--TASLGYEQMVKLL  326 (541)
Q Consensus       263 g~~~~-------~~d~~g~t~-L~~A------~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~--A~~~g~~~~v~~L  326 (541)
                      |++++       ..+....+| ||++      ...++.+++++|+++|++++.++ ..|.||||+  |...|+.|++++|
T Consensus       178 g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd-~~G~TpLh~~~~~~~~~~eiv~~L  256 (672)
T PHA02730        178 ECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRD-EGGSLPIQYYWSCSTIDIEIVKLL  256 (672)
T ss_pred             CCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcCcccHHHHHHH
Confidence            99985       233444444 4433      35578899999999999999888 789999985  5556779999999


Q ss_pred             HH--------------------------------cCCCcccccc--CCCchhHHHH-------HcC-CHHHH----HHhh
Q 037006          327 LQ--------------------------------KGANKYIRNK--SGKTAYDVAA-------ECG-HSRLF----DALK  360 (541)
Q Consensus       327 l~--------------------------------~g~~~~~~~~--~g~t~l~~A~-------~~g-~~~~~----~~l~  360 (541)
                      ++                                +|+|....+.  .|+-++|...       ..| +..++    +.+.
T Consensus       257 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~  336 (672)
T PHA02730        257 IKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFR  336 (672)
T ss_pred             HhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhh
Confidence            98                                5555544221  1222221111       111 11111    1111


Q ss_pred             cC------CchHHHHhh---CCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCC----HHHHHHHHHcCC--CCCCCCC
Q 037006          361 LG------DSLCVAARK---GEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGK----IEVVRMLIDKGI--DVDAKDE  425 (541)
Q Consensus       361 ~~------~~l~~a~~~---~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~----~~~v~~Ll~~g~--d~~~~d~  425 (541)
                      ..      ..++.-...   .+.+++++|+++|+++|.. ..|+||||+|+..++    .+++++|+++|+  ++|.+|.
T Consensus       337 ~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~  415 (672)
T PHA02730        337 QQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSN  415 (672)
T ss_pred             ccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccccccc
Confidence            10      124444443   4689999999999999975 799999999998875    899999999997  6999999


Q ss_pred             CCChHHHH---HHHcC---------CHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCCcc-c
Q 037006          426 DGYTALHC---AVESG---------HTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQ-T  492 (541)
Q Consensus       426 ~g~tpL~~---A~~~g---------~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~~~~~-~  492 (541)
                      .|.||||.   |...+         ..+++++|+++||+++++|..|+||||+|+..++.+++++|+++||+++..+. .
T Consensus       416 ~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~  495 (672)
T PHA02730        416 NGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSI  495 (672)
T ss_pred             CCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcC
Confidence            99999984   33332         23579999999999999999999999999999999999999999999998886 4


Q ss_pred             ccchhhhhhc--CCCccccccccccCcc
Q 037006          493 NLRQVSIQFG--NGKVGRDQMEGKFGMK  518 (541)
Q Consensus       493 ~~~~~~~~~~--~~~~~~~~~~~~~~~~  518 (541)
                      +.+++..+..  .++..+..++...|..
T Consensus       496 g~TaL~~Aa~~~~~~~eIv~~LLs~ga~  523 (672)
T PHA02730        496 INTAIQKSSYRRENKTKLVDLLLSYHPT  523 (672)
T ss_pred             CcCHHHHHHHhhcCcHHHHHHHHHcCCC
Confidence            7888877754  3566677777666654

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-45  Score=388.85  Aligned_cols=370  Identities=15%  Similarity=0.138  Sum_probs=282.5

Q ss_pred             cCcHHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHH----HHHHHHhcCCCCcccCCCCC
Q 037006          135 VGSPVLVLLVKD---GEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPD----IVQLLLEFGPDVESQGRCGC  207 (541)
Q Consensus       135 ~g~~~l~~a~~~---g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~~~  207 (541)
                      .|.|+||+|+..   |+.++++.||+.+..    ++..+..|.||||+|+..|+.+    +++.|++.+...+..+   .
T Consensus        31 ~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~----v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~---~  103 (661)
T PHA02917         31 FKNNALHAYLFNEHCNNVEVVKLLLDSGTN----PLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND---F  103 (661)
T ss_pred             CCCcHHHHHHHhhhcCcHHHHHHHHHCCCC----ccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC---c
Confidence            578999997655   889999999987743    5678899999999999999854    5678888754443322   3


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHH--hcCCHHHHHHHHHcCCCCCCCCC---CC---------
Q 037006          208 STPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLAL--RGGHLEVLKLLLIKGANVNALTK---DG---------  273 (541)
Q Consensus       208 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa--~~g~~~iv~~Ll~~g~~~~~~d~---~g---------  273 (541)
                      .++++.|+..|+.++|++|+++|++++..+..|+||||.|+  ..|+.+++++|+++|++++..|.   .|         
T Consensus       104 ~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~  183 (661)
T PHA02917        104 NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPR  183 (661)
T ss_pred             chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccc
Confidence            47788899999999999999999999999999999999543  47899999999999999986553   34         


Q ss_pred             --ChHHHHHHH-----------hCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCH--HHHHHHHHcCCCcc----
Q 037006          274 --NTALHLAVE-----------DRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYE--QMVKLLLQKGANKY----  334 (541)
Q Consensus       274 --~t~L~~A~~-----------~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~~~----  334 (541)
                        .||||+|+.           .++.+++++|+++|++++..+ ..|.||||+|+..|+.  ++|++|++ |++.+    
T Consensus       184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d-~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~  261 (661)
T PHA02917        184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSID-KNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSY  261 (661)
T ss_pred             ccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCC-CCCCcHHHHHHHcCCCcHHHHHHHHh-CCccccccc
Confidence              599999986           468899999999999999887 7899999999999985  79999975 87764    


Q ss_pred             ccccCCCchhHHHHHc---------CCHHHHHHhhcCCc----------------------------------hHHHHhh
Q 037006          335 IRNKSGKTAYDVAAEC---------GHSRLFDALKLGDS----------------------------------LCVAARK  371 (541)
Q Consensus       335 ~~~~~g~t~l~~A~~~---------g~~~~~~~l~~~~~----------------------------------l~~a~~~  371 (541)
                      ..|..|.+++++|+.-         .+.++++.|.....                                  +..++..
T Consensus       262 ~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  341 (661)
T PHA02917        262 IDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTF  341 (661)
T ss_pred             ccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHc
Confidence            4566788888888831         15677877733220                                  0123445


Q ss_pred             CC--HHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCChHHHHHHHcC----------
Q 037006          372 GE--VRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLID-KGIDVDAKDEDGYTALHCAVESG----------  438 (541)
Q Consensus       372 ~~--~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~g----------  438 (541)
                      |.  .+++++|+++|+++|.++.+|.|+.    ...+.+++++|+. .|++++..+..|+||||.|++.+          
T Consensus       342 g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~----~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~  417 (661)
T PHA02917        342 GDIDIPLVECMLEYGAVVNKEAIHGYFRN----INIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYT  417 (661)
T ss_pred             CCCcHHHHHHHHHcCCCCCCCCccccchh----hcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhh
Confidence            55  5599999999999988887777743    3556677777776 47776666667888887776432          


Q ss_pred             -------------CHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCCcccccchhhhhhc-CC
Q 037006          439 -------------HTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFG-NG  504 (541)
Q Consensus       439 -------------~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~-~~  504 (541)
                                   ..+++++|+++||+++.+|..|+||||+|+..++.+++++|+++|++.+..+..+.+++.+++. .+
T Consensus       418 ~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~  497 (661)
T PHA02917        418 YKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESR  497 (661)
T ss_pred             hhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCC
Confidence                         2456777888888888888778888888877777788888888888877777777777777764 44


Q ss_pred             CccccccccccCc
Q 037006          505 KVGRDQMEGKFGM  517 (541)
Q Consensus       505 ~~~~~~~~~~~~~  517 (541)
                      ......++...+.
T Consensus       498 ~~~iv~~LL~~ga  510 (661)
T PHA02917        498 NIELLKMLLCHKP  510 (661)
T ss_pred             CHHHHHHHHHcCC
Confidence            5555555554443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=4.8e-45  Score=382.29  Aligned_cols=301  Identities=17%  Similarity=0.201  Sum_probs=250.5

Q ss_pred             HHcCCHHHHHHHHhcC-CCCcccCCCCCCcHHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCC--HHH
Q 037006          181 IAQRRPDIVQLLLEFG-PDVESQGRCGCSTPLEAAAA--AGEALIVELLLARKASTERSETSTWGPIHLALRGGH--LEV  255 (541)
Q Consensus       181 ~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~t~L~~A~~--~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~--~~i  255 (541)
                      ...++.++|++|++.| ++++......|.||||+|+.  .++.+++++|+++|++++..+..|.||||+|+..|+  .++
T Consensus       150 ~~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eI  229 (764)
T PHA02716        150 TRGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASV  229 (764)
T ss_pred             ccCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHH
Confidence            3468899999999999 99998833449999999865  467899999999999999999999999999999995  589


Q ss_pred             HHHHHHcCCCCCCCCCCCChHHHHHH-------------------------------------HhCCHHHHHHHHHCCCC
Q 037006          256 LKLLLIKGANVNALTKDGNTALHLAV-------------------------------------EDRRRDCARLLLANGAR  298 (541)
Q Consensus       256 v~~Ll~~g~~~~~~d~~g~t~L~~A~-------------------------------------~~g~~~~v~~Ll~~g~~  298 (541)
                      +++|+++|++++.+|..|+||||+|+                                     ..|+.+++++|++.|++
T Consensus       230 VklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd  309 (764)
T PHA02716        230 IKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK  309 (764)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc
Confidence            99999999999999999999999753                                     45677888888888888


Q ss_pred             CCccCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHH
Q 037006          299 PDIRNARDGDTPLHITAS--LGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRT  376 (541)
Q Consensus       299 ~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~  376 (541)
                      ++..+ ..|+||||+|+.  .++.+++++|++.|++++.+|..|+||||+|+....  ++..+.     ......++.++
T Consensus       310 IN~kD-~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~la--v~~~ld-----~~~~~~~~~eV  381 (764)
T PHA02716        310 LHYKD-SAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLS--VVNILD-----PETDNDIRLDV  381 (764)
T ss_pred             eeccC-CCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhh--hhcccc-----ccccccChHHH
Confidence            88776 778899988764  457888999999999888888889999988765311  000000     00123478899


Q ss_pred             HHHHHHcCCCCCCCCCCCChHHHH----HHhcCCHHHHHHHHHcCC----------------------------------
Q 037006          377 MQRLIEAGAAINGKDLHGWTALHR----ASFKGKIEVVRMLIDKGI----------------------------------  418 (541)
Q Consensus       377 ~~~Ll~~g~~~~~~d~~g~t~L~~----Aa~~g~~~~v~~Ll~~g~----------------------------------  418 (541)
                      +++|+++|++++.+|..|+||||.    |...++.+++++|++.|+                                  
T Consensus       382 VklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~  461 (764)
T PHA02716        382 IQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPT  461 (764)
T ss_pred             HHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcch
Confidence            999999999999999999999994    233567889988887543                                  


Q ss_pred             ---------------------------CCCCCCCCCChHHHHHHHcCCH-----HHHHHHHHCCCCCcccCCCCCCHHHH
Q 037006          419 ---------------------------DVDAKDEDGYTALHCAVESGHT-----DVTELLVKKGADVEARTSKNVSPMQI  466 (541)
Q Consensus       419 ---------------------------d~~~~d~~g~tpL~~A~~~g~~-----~~v~~Ll~~ga~~~~~~~~g~t~l~~  466 (541)
                                                 ++|..|..|+||||+|+..|+.     +++++|++.|++++.+|..|+||||+
T Consensus       462 ~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~  541 (764)
T PHA02716        462 DLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLML  541 (764)
T ss_pred             hhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHH
Confidence                                       2345577899999999999876     55699999999999999999999999


Q ss_pred             HHHcCcH-----HHHHHHHhCCCCCCCC
Q 037006          467 AECLHYA-----GISRILMHGGATKDGI  489 (541)
Q Consensus       467 A~~~~~~-----~i~~~Ll~~ga~~~~~  489 (541)
                      |+..|+.     +++++|+++|++++..
T Consensus       542 A~~~g~~~~~~~eIvk~LL~~ga~~~~~  569 (764)
T PHA02716        542 TMRNNRLSGHQWYIVKNILDKRPNVDIV  569 (764)
T ss_pred             HHHcCCccccHHHHHHHHHhcCCCcchH
Confidence            9999976     9999999999998765

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.1e-45  Score=382.53  Aligned_cols=322  Identities=25%  Similarity=0.321  Sum_probs=275.5

Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcC---CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc
Q 037006          141 VLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQR---RPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAA  217 (541)
Q Consensus       141 ~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~  217 (541)
                      ..++..++.++|++|++.+..    ++..+..|.||||+|+..|   +.+++++|++.|++++..+.. |.||||+|+..
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~----vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~-g~TpLh~A~~~   93 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGAD----VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERC-GFTPLHLYLYN   93 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCC----cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHc
Confidence            446678899999999988743    6788889999999999998   999999999999999998885 99999999999


Q ss_pred             C-CHHHHHHHHHCCCCCCCCCCCCchHHHHHH--hcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhC--CHHHHHHH
Q 037006          218 G-EALIVELLLARKASTERSETSTWGPIHLAL--RGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDR--RRDCARLL  292 (541)
Q Consensus       218 g-~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa--~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g--~~~~v~~L  292 (541)
                      | +.+++++|+++|++++..+..|.||||+|+  ..++.+++++|++.|++++..|..|.||||+|+..+  +.+++++|
T Consensus        94 ~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~L  173 (471)
T PHA03095         94 ATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLL  173 (471)
T ss_pred             CCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHH
Confidence            9 599999999999999999999999999999  556889999999999999999999999999998876  67999999


Q ss_pred             HHCCCCCCccCCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHh
Q 037006          293 LANGARPDIRNARDGDTPLHITASL--GYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAAR  370 (541)
Q Consensus       293 l~~g~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~  370 (541)
                      ++.|++++..+ ..|.||||+|+..  ++.++++.|++.|++++..|..|.||||+|+..|+..                
T Consensus       174 l~~g~~~~~~d-~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~----------------  236 (471)
T PHA03095        174 IDAGADVYAVD-DRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCK----------------  236 (471)
T ss_pred             HHcCCCCcccC-CCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCch----------------
Confidence            99999998884 7899999999875  7789999999999999999999999999999877643                


Q ss_pred             hCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCC
Q 037006          371 KGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKG  450 (541)
Q Consensus       371 ~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  450 (541)
                         ..+++.|++.|+++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..|+.+++++|++++
T Consensus       237 ---~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~  313 (471)
T PHA03095        237 ---RSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKN  313 (471)
T ss_pred             ---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhC
Confidence               24577899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCCCCCHHHHH----HHcCcHHHHHHHHhCCCCCC
Q 037006          451 ADVEARTSKNVSPMQIA----ECLHYAGISRILMHGGATKD  487 (541)
Q Consensus       451 a~~~~~~~~g~t~l~~A----~~~~~~~i~~~Ll~~ga~~~  487 (541)
                      ++++..+....+...++    .......+..+++..|++..
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  354 (471)
T PHA03095        314 PSAETVAATLNTASVAGGDIPSDATRLCVAKVVLRGAFSLL  354 (471)
T ss_pred             CCHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHhcchhhc
Confidence            98876553332222222    11123445556666666643

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-45  Score=370.02  Aligned_cols=332  Identities=27%  Similarity=0.368  Sum_probs=295.7

Q ss_pred             ecCcHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHH
Q 037006          134 FVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEA  213 (541)
Q Consensus       134 ~~g~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~  213 (541)
                      ..|.+.+|.++..+-.      +...    ......|..+.+|||+|+.....+.|++|++.|++.+..+.. +.+|+|+
T Consensus        59 ~~gd~~~~~~~~~~y~------~~~~----~~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~-~~aplh~  127 (929)
T KOG0510|consen   59 AFGDTELHHASARNYI------LSKL----AISYAKDSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLN-KNAPLHL  127 (929)
T ss_pred             hhchhHHHHHHhhcch------hhhh----hhhhhhhcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhh-ccCchhh
Confidence            4578889988887733      1111    113456788999999999999999999999999999988887 8999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHH
Q 037006          214 AAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLL  293 (541)
Q Consensus       214 A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll  293 (541)
                      |+..|.++.++.|+++|++++..+..+.||||.||..++.|+.+.|++.|+++...|.+|.+|+|.|+..|..++.+..+
T Consensus       128 A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l  207 (929)
T KOG0510|consen  128 AADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFL  207 (929)
T ss_pred             ccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhh
Confidence            99999999999999999999999999999999999999999889999999999999999999999999999999999999


Q ss_pred             H-----CCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---------------ccccccCCCchhHHHHHcCCH
Q 037006          294 A-----NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGAN---------------KYIRNKSGKTAYDVAAECGHS  353 (541)
Q Consensus       294 ~-----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------------~~~~~~~g~t~l~~A~~~g~~  353 (541)
                      .     ++..+|..+ ..+.||||.|+..|+.++++.+++.|..               ++..|.+|.||||+|++.|+.
T Consensus       208 ~~~g~~r~~~in~~~-n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~  286 (929)
T KOG0510|consen  208 PEHGYERQTHINFDN-NEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGP  286 (929)
T ss_pred             ccccchhhccccccc-CCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCCh
Confidence            8     677888777 7899999999999999999999998764               234578888888888777666


Q ss_pred             HHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHH-cC-CCCCCCCCCCChHH
Q 037006          354 RLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLID-KG-IDVDAKDEDGYTAL  431 (541)
Q Consensus       354 ~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~-~g-~d~~~~d~~g~tpL  431 (541)
                      +.                     ++.|+..|++++.++.++.||||.||.+|+...|+-||+ .| ...|..|..|.|||
T Consensus       287 ~s---------------------vd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpL  345 (929)
T KOG0510|consen  287 ES---------------------VDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPL  345 (929)
T ss_pred             hH---------------------HHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCch
Confidence            55                     777999999999999999999999999999999999999 44 56889999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCc---ccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCCcccccchhh
Q 037006          432 HCAVESGHTDVTELLVKKGADVE---ARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVS  498 (541)
Q Consensus       432 ~~A~~~g~~~~v~~Ll~~ga~~~---~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~  498 (541)
                      |+|+..||.+++++|++.||...   ..|.+|.||||.|+..|+..+|++|+.+||+....+..+...+.
T Consensus       346 Hlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~  415 (929)
T KOG0510|consen  346 HLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFD  415 (929)
T ss_pred             hhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeecccccccccc
Confidence            99999999999999999999887   56999999999999999999999999999998776666665554

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.5e-45  Score=382.08  Aligned_cols=289  Identities=27%  Similarity=0.358  Sum_probs=270.9

Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC---CHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcC-CH
Q 037006          178 HIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAG---EALIVELLLARKASTERSETSTWGPIHLALRGG-HL  253 (541)
Q Consensus       178 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g---~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g-~~  253 (541)
                      ..|+..++.++|++|+++|++++..+.. |.||||+|+..+   +.+++++|++.|++++..+..|+||||+|+..| +.
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~-g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~   97 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEY-GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTL   97 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCC-CCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcH
Confidence            4567788999999999999999988876 899999999999   999999999999999999999999999999999 59


Q ss_pred             HHHHHHHHcCCCCCCCCCCCChHHHHHH--HhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHc
Q 037006          254 EVLKLLLIKGANVNALTKDGNTALHLAV--EDRRRDCARLLLANGARPDIRNARDGDTPLHITASLG--YEQMVKLLLQK  329 (541)
Q Consensus       254 ~iv~~Ll~~g~~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~  329 (541)
                      +++++|+++|++++..|..|.||||+|+  ..++.+++++|+++|++++..+ ..|.||||+|+..+  +.+++++|++.
T Consensus        98 ~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d-~~g~tpL~~a~~~~~~~~~iv~~Ll~~  176 (471)
T PHA03095         98 DVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALD-LYGMTPLAVLLKSRNANVELLRLLIDA  176 (471)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHHHHcCCCCHHHHHHHHHc
Confidence            9999999999999999999999999999  5678999999999999999887 78999999999876  68999999999


Q ss_pred             CCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCH--
Q 037006          330 GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKI--  407 (541)
Q Consensus       330 g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~--  407 (541)
                      |++++..+..|.||||+++...+                   +..++++.|+++|++++.+|..|+||||+|+..|+.  
T Consensus       177 g~~~~~~d~~g~t~Lh~~~~~~~-------------------~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~  237 (471)
T PHA03095        177 GADVYAVDDRFRSLLHHHLQSFK-------------------PRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKR  237 (471)
T ss_pred             CCCCcccCCCCCCHHHHHHHHCC-------------------CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchH
Confidence            99999999999999999998743                   234668899999999999999999999999999975  


Q ss_pred             HHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCC
Q 037006          408 EVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKD  487 (541)
Q Consensus       408 ~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~  487 (541)
                      .+++.|++.|+++|.+|..|+||||+|+..|+.+++++|+++||+++.+|..|+|||++|+..|+.+++++|++.+++.+
T Consensus       238 ~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        238 SLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE  317 (471)
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999864

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.4e-44  Score=375.47  Aligned_cols=289  Identities=28%  Similarity=0.418  Sum_probs=245.2

Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHH-----HHHcCCHHH
Q 037006          148 EMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEA-----AAAAGEALI  222 (541)
Q Consensus       148 ~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~-----A~~~g~~~i  222 (541)
                      ..+.++++++...    ..+..+..+.||||+|+..|+.++|++|++.|++++..+.. +.||||+     |+..|+.++
T Consensus        14 ~~~~~~~~~~~~~----~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~-~~t~L~~~~~~~a~~~~~~~i   88 (480)
T PHA03100         14 KVKNIKYIIMEDD----LNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKN-NSTPLHYLSNIKYNLTDVKEI   88 (480)
T ss_pred             HHHHHHHHHhcCc----cchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCcccc-CcCHHHHHHHHHHHhhchHHH
Confidence            3456677775542    24567788999999999999999999999999999887776 8899999     999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCchHHHHHH--hcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhC--CHHHHHHHHHCCCC
Q 037006          223 VELLLARKASTERSETSTWGPIHLAL--RGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDR--RRDCARLLLANGAR  298 (541)
Q Consensus       223 v~~Ll~~g~~~~~~~~~~~t~L~~Aa--~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~  298 (541)
                      +++|+++|++++..+..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..|  +.+++++|+++|++
T Consensus        89 v~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d  168 (480)
T PHA03100         89 VKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD  168 (480)
T ss_pred             HHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC
Confidence            99999999999999999999999999  999999999999999999999999999999999999  99999999999999


Q ss_pred             CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCC--HHH
Q 037006          299 PDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGE--VRT  376 (541)
Q Consensus       299 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~--~~~  376 (541)
                      ++..+ ..|.||||+|+..|+.+++++|+++|++++..+..|.++++.               .++++.|+..++  .++
T Consensus       169 in~~d-~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~---------------~t~l~~a~~~~~~~~~i  232 (480)
T PHA03100        169 INAKN-RYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIF---------------ETPLHIAACYNEITLEV  232 (480)
T ss_pred             ccccc-CCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHH---------------HhHHHHHHHhCcCcHHH
Confidence            99887 589999999999999999999999999999999989555443               122333444444  566


Q ss_pred             HHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccc
Q 037006          377 MQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR  456 (541)
Q Consensus       377 ~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~  456 (541)
                      +++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..++.+++++|+++|++++..
T Consensus       233 v~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~i  312 (480)
T PHA03100        233 VNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTI  312 (480)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHHH
Confidence            77778888888878878888888888888888888888888888888888888888888888888888888888777654


Q ss_pred             C
Q 037006          457 T  457 (541)
Q Consensus       457 ~  457 (541)
                      +
T Consensus       313 ~  313 (480)
T PHA03100        313 I  313 (480)
T ss_pred             H
Confidence            3

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-43  Score=374.52  Aligned_cols=360  Identities=18%  Similarity=0.187  Sum_probs=288.5

Q ss_pred             hhhhhhcCCceeec---CcHHHHHHHHcCCHHH----HHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHh
Q 037006          122 KQVFIDSGIKIMFV---GSPVLVLLVKDGEMDD----LREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLE  194 (541)
Q Consensus       122 ~~~~~~~~~~~~~~---g~~~l~~a~~~g~~~~----v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~  194 (541)
                      .+.++++|+++...   |.|||++|+..|+.++    ++.|++....    .+..+  ..+++|+|+..|+.++|++|++
T Consensus        51 v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~----~n~~~--~~~~~~~a~~~~~~e~vk~Ll~  124 (661)
T PHA02917         51 VKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGY----SNIND--FNIFSYMKSKNVDVDLIKVLVE  124 (661)
T ss_pred             HHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCC----CCCCC--cchHHHHHhhcCCHHHHHHHHH
Confidence            56788999887643   6899999999998554    4566665432    12222  3477889999999999999999


Q ss_pred             cCCCCcccCCCCCCcHHHHH--HHcCCHHHHHHHHHCCCCCCCCCC---CC-----------chHHHHHHh---------
Q 037006          195 FGPDVESQGRCGCSTPLEAA--AAAGEALIVELLLARKASTERSET---ST-----------WGPIHLALR---------  249 (541)
Q Consensus       195 ~g~~~~~~~~~~~~t~L~~A--~~~g~~~iv~~Ll~~g~~~~~~~~---~~-----------~t~L~~Aa~---------  249 (541)
                      +|++++.++.. |.|||+.|  +..|+.+++++|+++|++++..+.   .|           .||||+|+.         
T Consensus       125 ~Gadin~~d~~-g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~  203 (661)
T PHA02917        125 HGFDLSVKCEN-HRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDT  203 (661)
T ss_pred             cCCCCCccCCC-CccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccc
Confidence            99999998887 99999954  457899999999999999975543   33           599999986         


Q ss_pred             --cCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCH--HHHHHHHHCCCCCCc---cCCCCCCcHHHHHHHc-----
Q 037006          250 --GGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR--DCARLLLANGARPDI---RNARDGDTPLHITASL-----  317 (541)
Q Consensus       250 --~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~~~~---~~~~~g~t~L~~A~~~-----  317 (541)
                        .++.+++++|+++|++++..|.+|.||||+|+..|+.  ++|++|++ |++++.   ..+..+.+|+++|+..     
T Consensus       204 ~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~  282 (661)
T PHA02917        204 RAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYR  282 (661)
T ss_pred             cccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhcc
Confidence              5689999999999999999999999999999999985  79999985 887753   1225578899999842     


Q ss_pred             ----CCHHHHHHHHHcCCCccc-------c------------ccCCCchhHHHH---HcCC--HHHHHHhhcCCc-----
Q 037006          318 ----GYEQMVKLLLQKGANKYI-------R------------NKSGKTAYDVAA---ECGH--SRLFDALKLGDS-----  364 (541)
Q Consensus       318 ----g~~~~v~~Ll~~g~~~~~-------~------------~~~g~t~l~~A~---~~g~--~~~~~~l~~~~~-----  364 (541)
                          .+.+++++|++.|++...       .            ...+.+++|.+.   ..|.  .++++.|....+     
T Consensus       283 ~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~  362 (661)
T PHA02917        283 YNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKE  362 (661)
T ss_pred             ccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCC
Confidence                177999999999986321       1            112333444333   3565  458888843321     


Q ss_pred             ---hHHHHhhCCHHHHHHHHH-cCCCCCCCCCCCChHHHHHHhcC-----------------------CHHHHHHHHHcC
Q 037006          365 ---LCVAARKGEVRTMQRLIE-AGAAINGKDLHGWTALHRASFKG-----------------------KIEVVRMLIDKG  417 (541)
Q Consensus       365 ---l~~a~~~~~~~~~~~Ll~-~g~~~~~~d~~g~t~L~~Aa~~g-----------------------~~~~v~~Ll~~g  417 (541)
                         -..+......+++++|+. .|++++..+.+|+||||.|++.+                       ..+++++|+++|
T Consensus       363 ~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~G  442 (661)
T PHA02917        363 AIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYL  442 (661)
T ss_pred             CccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCC
Confidence               112334566778899987 68888888888999999987543                       356889999999


Q ss_pred             CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHH-cCcHHHHHHHHhCCCCCCCC
Q 037006          418 IDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAEC-LHYAGISRILMHGGATKDGI  489 (541)
Q Consensus       418 ~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~-~~~~~i~~~Ll~~ga~~~~~  489 (541)
                      +|+|.+|..|+||||+|+..++.+++++|+++|++++.+|..|+|||++|+. .++.+++++|+++|++.+..
T Consensus       443 AdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL~~ga~i~~i  515 (661)
T PHA02917        443 KDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCHKPTLDCV  515 (661)
T ss_pred             CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHcCCChhHH
Confidence            9999999999999999999999999999999999999999999999999996 68899999999999987633

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=3.9e-45  Score=388.99  Aligned_cols=391  Identities=31%  Similarity=0.457  Sum_probs=285.5

Q ss_pred             hhhhhhcCCcee---ecCcHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCC
Q 037006          122 KQVFIDSGIKIM---FVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPD  198 (541)
Q Consensus       122 ~~~~~~~~~~~~---~~g~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  198 (541)
                      .++++.+|+++.   +.|-++++.|+..|..+++.+++.++..    .+..+..|.||+|.|+..+..+++++|++.|++
T Consensus       225 ~eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~----~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~  300 (1143)
T KOG4177|consen  225 VELLLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQHGAS----VNVSTVRGETPLHMAARAGQVEVCKLLLQNGAD  300 (1143)
T ss_pred             eeeeeeccCcCCcccccCccHHHHHHhccchhHHHHHHhcccc----cCcccccccCcchhhhccchhhhHhhhhccCcc
Confidence            345566677665   4478999999999999999999998854    677888999999999999999999999999999


Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHH
Q 037006          199 VESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALH  278 (541)
Q Consensus       199 ~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~  278 (541)
                      +..+... ..||+|.|...|+.+++++++..++..+..+..+.+|||+++..++.++..+|...+..-...+..|.||+|
T Consensus       301 ~~~~~~~-~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~  379 (1143)
T KOG4177|consen  301 VLAKARD-DQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLH  379 (1143)
T ss_pred             ccccccc-ccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchh
Confidence            9888877 788899888888888888888888888877777777777777777777777777777666667777777777


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcC-CHHHHH
Q 037006          279 LAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECG-HSRLFD  357 (541)
Q Consensus       279 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g-~~~~~~  357 (541)
                      .|+..|..+++++++..|++++... +.|.||||.|+.+++..+++.+++.|++++..+..|.|++|+|+..| ..+...
T Consensus       380 la~~~g~~~~v~Lll~~ga~~~~~g-k~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~  458 (1143)
T KOG4177|consen  380 LAVKSGRVSVVELLLEAGADPNSAG-KNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIAR  458 (1143)
T ss_pred             hhcccCchhHHHhhhhccCCcccCC-CCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhh
Confidence            7777777777777777777776665 66677777777777777777777777776666766777777776666 333332


Q ss_pred             Hh------------hcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Q 037006          358 AL------------KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE  425 (541)
Q Consensus       358 ~l------------~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~  425 (541)
                      .+            ..-++++.|+..|+.++++.+++.++..+.....|.|++|.|+..+...+++.++++|++++.++.
T Consensus       459 ~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~  538 (1143)
T KOG4177|consen  459 LLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTG  538 (1143)
T ss_pred             hHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcc
Confidence            22            112346666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCCcccccchhhhhhcCCC
Q 037006          426 DGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNGK  505 (541)
Q Consensus       426 ~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  505 (541)
                      .|+||||.|+.+|+..+|++||++|||++++++.|+||||.|+..|+.+|+.+|+++||++|..+-.+.+++.++...++
T Consensus       539 r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~  618 (1143)
T KOG4177|consen  539 RGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGY  618 (1143)
T ss_pred             cccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcc
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             ccccccccccCcc
Q 037006          506 VGRDQMEGKFGMK  518 (541)
Q Consensus       506 ~~~~~~~~~~~~~  518 (541)
                      ....+.....+..
T Consensus       619 ~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  619 LSVVKLLKVVTAT  631 (1143)
T ss_pred             cchhhHHHhccCc
Confidence            6666555555544

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=4.8e-44  Score=358.27  Aligned_cols=306  Identities=30%  Similarity=0.390  Sum_probs=282.1

Q ss_pred             cCcHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHH
Q 037006          135 VGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAA  214 (541)
Q Consensus       135 ~g~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A  214 (541)
                      -|.++||+|+.....+.|+.+++.+..    ....+..+.+|+|+|+..|+.++++.|+++|+|++..+.. +.||||.|
T Consensus        87 ~~n~~l~~a~~~~~~~~i~~Lls~gad----~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~-~~TpLh~A  161 (929)
T KOG0510|consen   87 ADNTPLHAAVEYNQGDKIQVLLSYGAD----TPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDEN-GFTPLHLA  161 (929)
T ss_pred             ccCchhHHHhhcchHHHHHHHHhcCCC----CChhhhhccCchhhccccchHHHHHHHHHhcCCccccccC-CCchhhHH
Confidence            477899999999999999999998753    6778889999999999999999999999999999999887 89999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHH-----cCCCCCCCCCCCChHHHHHHHhCCHHHH
Q 037006          215 AAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLI-----KGANVNALTKDGNTALHLAVEDRRRDCA  289 (541)
Q Consensus       215 ~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~-----~g~~~~~~d~~g~t~L~~A~~~g~~~~v  289 (541)
                      |..++.|..+.|++.|+++...+..|..|+|.|++.|..++++..+.     .+..+|..+..+.||||.|+..|+.+++
T Consensus       162 ~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~l  241 (929)
T KOG0510|consen  162 ARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEML  241 (929)
T ss_pred             HhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHH
Confidence            99999999999999999999999999999999999999999999998     5788999999999999999999999999


Q ss_pred             HHHHHCCCCCCccC--------------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHH
Q 037006          290 RLLLANGARPDIRN--------------ARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRL  355 (541)
Q Consensus       290 ~~Ll~~g~~~~~~~--------------~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~  355 (541)
                      +.+|+.|.......              +.+|.||||+|++.|+.+.++.|+..|++++.++.++.||||.|+.+|+.+.
T Consensus       242 k~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~nt  321 (929)
T KOG0510|consen  242 KMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINT  321 (929)
T ss_pred             HHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHH
Confidence            99999876643221              3679999999999999999999999999999999999999999998888776


Q ss_pred             HHHhhcCCchHHHHhhCCHHHHHHHHH-c-CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCC---CCCCCCChH
Q 037006          356 FDALKLGDSLCVAARKGEVRTMQRLIE-A-GAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVD---AKDEDGYTA  430 (541)
Q Consensus       356 ~~~l~~~~~l~~a~~~~~~~~~~~Ll~-~-g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~---~~d~~g~tp  430 (541)
                      +                     +.|++ . -...|..|..|+||||.|+.+||..+++.|+++|++.+   ..|.+|+||
T Consensus       322 v---------------------~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~Ta  380 (929)
T KOG0510|consen  322 V---------------------ERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTA  380 (929)
T ss_pred             H---------------------HHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchh
Confidence            4                     44555 3 35678889999999999999999999999999999877   569999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHH
Q 037006          431 LHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQI  466 (541)
Q Consensus       431 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  466 (541)
                      ||.|+..|+..+|++|+.+||+++.+|..|.|++++
T Consensus       381 LH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  381 LHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             hhHHHHhccHHHHHHHHHcCCceeeccccccccccc
Confidence            999999999999999999999999999999999985

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-42  Score=358.02  Aligned_cols=295  Identities=24%  Similarity=0.316  Sum_probs=268.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCC-CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCH
Q 037006          175 TLLHIAIAQRRPDIVQLLLEFGP-DVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHL  253 (541)
Q Consensus       175 t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~  253 (541)
                      ..|..|+..|+.++|+.|++.+. .++..+.. +.||||.|+..|+.+++++|++.|++++..+..|.||||.|+..|+.
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~-~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~   81 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDE-TTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAH   81 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            36889999999999999998654 45555554 89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 037006          254 EVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANK  333 (541)
Q Consensus       254 ~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  333 (541)
                      +++++|+++|+++...          +....+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|+++
T Consensus        82 ~iv~~Ll~~g~~~~~~----------~~~~~~~~~i~~ll~~g~d~n~~~-~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~  150 (434)
T PHA02874         82 DIIKLLIDNGVDTSIL----------PIPCIEKDMIKTILDCGIDVNIKD-AELKTFLHYAIKKGDLESIKMLFEYGADV  150 (434)
T ss_pred             HHHHHHHHCCCCCCcc----------hhccCCHHHHHHHHHCcCCCCCCC-CCCccHHHHHHHCCCHHHHHHHHhCCCCC
Confidence            9999999999887532          233457899999999999999887 78999999999999999999999999999


Q ss_pred             cccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 037006          334 YIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRML  413 (541)
Q Consensus       334 ~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~L  413 (541)
                      +..|..|.||||+|+..|+.+                     ++++|+++|++++..+..|+||||+|+..|+.+++++|
T Consensus       151 n~~d~~g~tpLh~A~~~~~~~---------------------iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~L  209 (434)
T PHA02874        151 NIEDDNGCYPIHIAIKHNFFD---------------------IIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLL  209 (434)
T ss_pred             CCcCCCCCCHHHHHHHCCcHH---------------------HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999998876654                     47889999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcC-cHHHHHHHHhCCCCCCCCccc
Q 037006          414 IDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH-YAGISRILMHGGATKDGIQQT  492 (541)
Q Consensus       414 l~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~-~~~i~~~Ll~~ga~~~~~~~~  492 (541)
                      ++.|++++.++..|.||||+|+..+. +++++|+ .|++++.+|..|+||||+|+..+ +.+++++|+++|++.+..+..
T Consensus       210 l~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~  287 (434)
T PHA02874        210 IDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNK  287 (434)
T ss_pred             HhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCC
Confidence            99999999999999999999999865 6777776 68999999999999999999876 789999999999999999999


Q ss_pred             ccchhhhhhcCC
Q 037006          493 NLRQVSIQFGNG  504 (541)
Q Consensus       493 ~~~~~~~~~~~~  504 (541)
                      +.+++..+...+
T Consensus       288 g~TpL~~A~~~~  299 (434)
T PHA02874        288 GENPIDTAFKYI  299 (434)
T ss_pred             CCCHHHHHHHhC
Confidence            999999988665

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=3e-42  Score=354.36  Aligned_cols=347  Identities=14%  Similarity=0.153  Sum_probs=283.5

Q ss_pred             hhhhhhcCCceee---cCcHHHHHHHHcC--CHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHH--cCCHHHHHHHHh
Q 037006          122 KQVFIDSGIKIMF---VGSPVLVLLVKDG--EMDDLREVLERSDPAWNPADSADAQGQTLLHIAIA--QRRPDIVQLLLE  194 (541)
Q Consensus       122 ~~~~~~~~~~~~~---~g~~~l~~a~~~g--~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~--~g~~~~v~~Ll~  194 (541)
                      .+.+++.|+++..   .|.||||+|+..+  +.|+++.|++.+...  ..+..|..+.+|||.++.  .++.++|++|++
T Consensus        60 vklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~--~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~  137 (672)
T PHA02730         60 VRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNA--SNELTSNINDFDLYSYMSSDNIDLRLLKYLIV  137 (672)
T ss_pred             HHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCC--CcccccccCCchHHHHHHhcCCcHHHHHHHHH
Confidence            5678899988874   4899999999977  799999999986321  134567778899999998  899999999996


Q ss_pred             -cCCCCcccCC----CCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-------CCCCCCc-hHHHHH------HhcCCHHH
Q 037006          195 -FGPDVESQGR----CGCSTPLEAAAAAGEALIVELLLARKASTE-------RSETSTW-GPIHLA------LRGGHLEV  255 (541)
Q Consensus       195 -~g~~~~~~~~----~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~-------~~~~~~~-t~L~~A------a~~g~~~i  255 (541)
                       .+++++....    ..|.+|+++|...++.+||++|+++|++++       ..+.... |.||++      ...++.|+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~ei  217 (672)
T PHA02730        138 DKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDV  217 (672)
T ss_pred             hcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHH
Confidence             6678776533    248899999999999999999999999995       1333344 455533      46678999


Q ss_pred             HHHHHHcCCCCCCCCCCCChHHHH--HHHhCCHHHHHHHHH--------------------------------CCCCCCc
Q 037006          256 LKLLLIKGANVNALTKDGNTALHL--AVEDRRRDCARLLLA--------------------------------NGARPDI  301 (541)
Q Consensus       256 v~~Ll~~g~~~~~~d~~g~t~L~~--A~~~g~~~~v~~Ll~--------------------------------~g~~~~~  301 (541)
                      +++|+++|+++|.+|.+|.||||+  |...++.++|++|++                                +|++...
T Consensus       218 v~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  297 (672)
T PHA02730        218 IKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEI  297 (672)
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHH
Confidence            999999999999999999999995  556677999999999                                6777754


Q ss_pred             --------------------cCCCCCCc---------------------HHHHHHHcC---CHHHHHHHHHcCCCccccc
Q 037006          302 --------------------RNARDGDT---------------------PLHITASLG---YEQMVKLLLQKGANKYIRN  337 (541)
Q Consensus       302 --------------------~~~~~g~t---------------------~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~  337 (541)
                                          .+ ..|.+                     .|+.=...+   +.+++++|+++|++++.. 
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~-~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-  375 (672)
T PHA02730        298 VNLLIEGRHTLIDVMRSITSYD-SREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-  375 (672)
T ss_pred             HHHHhhccCcchhhhhcccccc-ccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-
Confidence                                11 23433                     555555545   689999999999999985 


Q ss_pred             cCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCC--CCCCCCCCCChHHHH---HHhcC-------
Q 037006          338 KSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGA--AINGKDLHGWTALHR---ASFKG-------  405 (541)
Q Consensus       338 ~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~--~~~~~d~~g~t~L~~---Aa~~g-------  405 (541)
                      ..|.||||+|+..++..                 -+.+++++|+++|+  ++|.+|..|.||||.   |...+       
T Consensus       376 ~~G~TpLH~Aa~~nnn~-----------------i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e  438 (672)
T PHA02730        376 TDNNYPLHDYFVNNNNI-----------------VDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYE  438 (672)
T ss_pred             CCCCcHHHHHHHHcCCc-----------------chHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccc
Confidence            79999999987765310                 01467899999997  699999999999984   33332       


Q ss_pred             --CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCC-CCCCHHHHHHHc--CcHHHHHHHH
Q 037006          406 --KIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTS-KNVSPMQIAECL--HYAGISRILM  480 (541)
Q Consensus       406 --~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~--~~~~i~~~Ll  480 (541)
                        ..+++++|+++|+|+|.+|..|+||||+|+..++.+++++|+++||+++.+|. .|.|||++|+..  ++.+++++|+
T Consensus       439 ~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LL  518 (672)
T PHA02730        439 TILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLL  518 (672)
T ss_pred             hhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHH
Confidence              23679999999999999999999999999999999999999999999999997 599999999874  7899999999


Q ss_pred             hCCCCCCCC
Q 037006          481 HGGATKDGI  489 (541)
Q Consensus       481 ~~ga~~~~~  489 (541)
                      ++|++.+..
T Consensus       519 s~ga~i~~I  527 (672)
T PHA02730        519 SYHPTLETM  527 (672)
T ss_pred             HcCCCHHHH
Confidence            999986533

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-42  Score=360.83  Aligned_cols=315  Identities=24%  Similarity=0.302  Sum_probs=254.3

Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCH
Q 037006          141 VLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEA  220 (541)
Q Consensus       141 ~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~  220 (541)
                      ..++...+.+.+...++.........+.....+.||||+||..|+.++|++|++.|++++..+.. |.||||+|+..|+.
T Consensus         5 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~-g~TpLh~A~~~g~~   83 (477)
T PHA02878          5 YKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHR-DLTPLHIICKEPNK   83 (477)
T ss_pred             HHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHCccH
Confidence            34444555544555544322111112334457889999999999999999999999999988876 89999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhC--CHHHHHHHHHCCCC
Q 037006          221 LIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDR--RRDCARLLLANGAR  298 (541)
Q Consensus       221 ~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~  298 (541)
                      +++++|++.+.....  ..+.++++.|+..++.+++++|+..+.+.....  ....+..+...+  +.+++++|+++|++
T Consensus        84 ~~v~~Ll~~~~~~~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~--~~~~~~~~~~~~~~~~~iv~~Ll~~gad  159 (477)
T PHA02878         84 LGMKEMIRSINKCSV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTI--DLVYIDKKSKDDIIEAEITKLLLSYGAD  159 (477)
T ss_pred             hHHHHHHHHHhcccc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcccC--cHHHHhhccchhhHHHHHHHHHHHcCCC
Confidence            999999998765544  457789999999999999999998764432211  111111111222  34599999999999


Q ss_pred             CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHH
Q 037006          299 PDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQ  378 (541)
Q Consensus       299 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~  378 (541)
                      ++..+...|.||||+|+..|+.+++++|++.|++++..|..|.||||.|+..|+.                     ++++
T Consensus       160 in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~---------------------~iv~  218 (477)
T PHA02878        160 INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNK---------------------PIVH  218 (477)
T ss_pred             CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCH---------------------HHHH
Confidence            9988844499999999999999999999999999999999999999988876665                     4578


Q ss_pred             HHHHcCCCCCCCCCCCChHHHHHHhc-CCHHHHHHHHHcCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHCCCCCccc
Q 037006          379 RLIEAGAAINGKDLHGWTALHRASFK-GKIEVVRMLIDKGIDVDAKDE-DGYTALHCAVESGHTDVTELLVKKGADVEAR  456 (541)
Q Consensus       379 ~Ll~~g~~~~~~d~~g~t~L~~Aa~~-g~~~~v~~Ll~~g~d~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~  456 (541)
                      +|+++|++++.+|..|+||||+|+.. ++.+++++|+++|+++|.++. .|.||||+|  .++.+++++|+++|+|++..
T Consensus       219 ~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~  296 (477)
T PHA02878        219 ILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSL  296 (477)
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCc
Confidence            89999999999999999999999975 789999999999999999886 799999999  57889999999999999999


Q ss_pred             CCCCCCHHHHHHHcC-cHHHHHHHHhCC
Q 037006          457 TSKNVSPMQIAECLH-YAGISRILMHGG  483 (541)
Q Consensus       457 ~~~g~t~l~~A~~~~-~~~i~~~Ll~~g  483 (541)
                      |..|.|||++|+..+ ..+++++|+.++
T Consensus       297 d~~g~TpL~~A~~~~~~~~~~~~li~~~  324 (477)
T PHA02878        297 NSYKLTPLSSAVKQYLCINIGRILISNI  324 (477)
T ss_pred             CCCCCCHHHHHHHHcCccchHHHHHHHH
Confidence            999999999998754 466777777653

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=5.4e-44  Score=380.32  Aligned_cols=356  Identities=34%  Similarity=0.533  Sum_probs=336.3

Q ss_pred             hhhhcCCcee---ecCcHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCc
Q 037006          124 VFIDSGIKIM---FVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVE  200 (541)
Q Consensus       124 ~~~~~~~~~~---~~g~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  200 (541)
                      .++..|+.+.   +.|.||+|.|+..+..+.++.+++++..    ....+....||+|.|...|+.++++++++.++.++
T Consensus       260 ~l~~~ga~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~----~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~  335 (1143)
T KOG4177|consen  260 LLLQHGASVNVSTVRGETPLHMAARAGQVEVCKLLLQNGAD----VLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPN  335 (1143)
T ss_pred             HHHhcccccCcccccccCcchhhhccchhhhHhhhhccCcc----cccccccccChhhhhcccchHHHHHHHhhccCCcc
Confidence            4555566554   3478999999999999999999998753    45667789999999999999999999999999999


Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHH
Q 037006          201 SQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLA  280 (541)
Q Consensus       201 ~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A  280 (541)
                      ..+.. +.+|||+++..++.++..+|.+.+......+..+++|+|.|+..|..+++++++..|++++...+.|.||||.|
T Consensus       336 aar~~-g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~a  414 (1143)
T KOG4177|consen  336 AARTA-GYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVA  414 (1143)
T ss_pred             ccCcC-CcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeeh
Confidence            88887 99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHh
Q 037006          281 VEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLG-YEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL  359 (541)
Q Consensus       281 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l  359 (541)
                      +..++.++++.+++.|++++..+ ..|.||+|+|+..| ..++...+++.|++++.....|.||||.|+..|+.+++..+
T Consensus       415 a~~~~~~~v~l~l~~gA~~~~~~-~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~ll  493 (1143)
T KOG4177|consen  415 AHYGNPRVVKLLLKRGASPNAKA-KLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLL  493 (1143)
T ss_pred             hhccCcceEEEEeccCCChhhHh-hcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHh
Confidence            99999999999999999999988 78899999999999 88999999999999999999999999999999999999988


Q ss_pred             hcC------------CchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q 037006          360 KLG------------DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG  427 (541)
Q Consensus       360 ~~~------------~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g  427 (541)
                      ...            ..++.+...+...+.+.++++|++++.++..|.||||.|+.+|+..+|++|+++|+|++.+++.|
T Consensus       494 le~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G  573 (1143)
T KOG4177|consen  494 LEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLG  573 (1143)
T ss_pred             hhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCC
Confidence            553            34889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q 037006          428 YTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGAT  485 (541)
Q Consensus       428 ~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~  485 (541)
                      +||||.|+..|+.+|+++|+++||++|..|.+|.|||++|+..|+.+++++|...|++
T Consensus       574 ~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  574 YTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             CChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            9999999999999999999999999999999999999999999999999999999998

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-41  Score=354.83  Aligned_cols=282  Identities=24%  Similarity=0.328  Sum_probs=155.5

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHc--CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC------
Q 037006          147 GEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQ--RRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAG------  218 (541)
Q Consensus       147 g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g------  218 (541)
                      .+.++++.|++.+..    ++.. ..|.||||.++..  ++.++|++|+++|++++..+.  +.|||+.|+.++      
T Consensus        14 ~~~~~v~~LL~~Gad----vN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~--~~tpL~~a~~~~~~~~~~   86 (494)
T PHA02989         14 VDKNALEFLLRTGFD----VNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGY--IETPLCAVLRNREITSNK   86 (494)
T ss_pred             CcHHHHHHHHHcCCC----cccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCCC--CCCcHHHHHhccCcchhh
Confidence            456666666655432    3333 3455555443332  245666666666666655432  456666555433      


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCchHHHHHHhc---CCHHHHHHHHHcCCCC-CCCCCCCChHHHHHHHh--CCHHHHHHH
Q 037006          219 EALIVELLLARKASTERSETSTWGPIHLALRG---GHLEVLKLLLIKGANV-NALTKDGNTALHLAVED--RRRDCARLL  292 (541)
Q Consensus       219 ~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~---g~~~iv~~Ll~~g~~~-~~~d~~g~t~L~~A~~~--g~~~~v~~L  292 (541)
                      +.+++++|+++|++++..+..|+||||.|+..   |+.+++++|+++|+++ +..|..|+||||+|+..  ++.+++++|
T Consensus        87 ~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~L  166 (494)
T PHA02989         87 IKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKIL  166 (494)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHH
Confidence            34566666666666666666666666655433   4556666666666666 55556666666655543  355666666


Q ss_pred             HHCCCCCCccCCCCCCcHHHHHHHcC----CHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHH
Q 037006          293 LANGARPDIRNARDGDTPLHITASLG----YEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVA  368 (541)
Q Consensus       293 l~~g~~~~~~~~~~g~t~L~~A~~~g----~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a  368 (541)
                      +++|++++...+..|.||||+|+..+    +.+++++|++.|++++..+..+.+++|.++.               -..+
T Consensus       167 l~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~---------------~~~~  231 (494)
T PHA02989        167 LSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLD---------------NNKI  231 (494)
T ss_pred             HHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHH---------------hchh
Confidence            66666655532345566666555433    5566666666666666555555555554432               1223


Q ss_pred             HhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHH
Q 037006          369 ARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVK  448 (541)
Q Consensus       369 ~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  448 (541)
                      ...+..+++++|+. |+++|.+|..|+||||+|+..|+.+++++|+++|+|+|.+|..|+||||+|+..|+.+++++|++
T Consensus       232 ~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~  310 (494)
T PHA02989        232 LSKKEFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQ  310 (494)
T ss_pred             hcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            33344455554433 45666666666666666666666666666666666666666666666666666666666666665


Q ss_pred             CCC
Q 037006          449 KGA  451 (541)
Q Consensus       449 ~ga  451 (541)
                      .+.
T Consensus       311 ~~p  313 (494)
T PHA02989        311 LKP  313 (494)
T ss_pred             cCC
Confidence            543

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.9e-41  Score=348.42  Aligned_cols=283  Identities=20%  Similarity=0.246  Sum_probs=250.9

Q ss_pred             cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc--CCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcC------CHH
Q 037006          183 QRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAA--GEALIVELLLARKASTERSETSTWGPIHLALRGG------HLE  254 (541)
Q Consensus       183 ~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~--g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g------~~~  254 (541)
                      ..+.++|++|+++|++++.. .. |.|||+.++..  ++.++|++|+++|++++..+ .+.||||.|+..+      +.+
T Consensus        13 ~~~~~~v~~LL~~GadvN~~-~~-g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~   89 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVNEE-YR-GNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKK   89 (494)
T ss_pred             cCcHHHHHHHHHcCCCcccc-cC-CCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHH
Confidence            46889999999999999988 33 88988765543  47999999999999999876 5789999998754      478


Q ss_pred             HHHHHHHcCCCCCCCCCCCChHHHHHHHh---CCHHHHHHHHHCCCCC-CccCCCCCCcHHHHHHHc--CCHHHHHHHHH
Q 037006          255 VLKLLLIKGANVNALTKDGNTALHLAVED---RRRDCARLLLANGARP-DIRNARDGDTPLHITASL--GYEQMVKLLLQ  328 (541)
Q Consensus       255 iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~  328 (541)
                      ++++|+++|++++..|..|.||||.|+..   ++.+++++|+++|+++ +..+ ..|.||||+|+..  ++.+++++|++
T Consensus        90 iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d-~~g~tpLh~a~~~~~~~~~iv~~Ll~  168 (494)
T PHA02989         90 IVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKN-SRGYNLLHMYLESFSVKKDVIKILLS  168 (494)
T ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccC-CCCCCHHHHHHHhccCCHHHHHHHHH
Confidence            99999999999999999999999988765   6789999999999999 5655 7899999998864  68999999999


Q ss_pred             cCCCccc-cccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhc---
Q 037006          329 KGANKYI-RNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFK---  404 (541)
Q Consensus       329 ~g~~~~~-~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~---  404 (541)
                      +|++++. .+..|.||+|.|+..+.                 ..++.+++++|+++|++++..+..|.|+||.++..   
T Consensus       169 ~Gadi~~~~~~~g~tpL~~a~~~~~-----------------~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~  231 (494)
T PHA02989        169 FGVNLFEKTSLYGLTPMNIYLRNDI-----------------DVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKI  231 (494)
T ss_pred             cCCCccccccccCCChHHHHHhccc-----------------ccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchh
Confidence            9999998 68899999999988642                 34567889999999999999999999999987754   


Q ss_pred             ---CCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHh
Q 037006          405 ---GKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMH  481 (541)
Q Consensus       405 ---g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~  481 (541)
                         +..+++++|+. |+++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+|||++|+..|+.+++++|++
T Consensus       232 ~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~  310 (494)
T PHA02989        232 LSKKEFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQ  310 (494)
T ss_pred             hcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence               35788887765 79999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 037006          482 GGATKD  487 (541)
Q Consensus       482 ~ga~~~  487 (541)
                      .++..+
T Consensus       311 ~~p~~~  316 (494)
T PHA02989        311 LKPGKY  316 (494)
T ss_pred             cCCChH
Confidence            887643

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.2e-41  Score=350.81  Aligned_cols=264  Identities=29%  Similarity=0.370  Sum_probs=248.0

Q ss_pred             ecCcHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHH-----HHHcCCHHHHHHHHhcCCCCcccCCCCCC
Q 037006          134 FVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHI-----AIAQRRPDIVQLLLEFGPDVESQGRCGCS  208 (541)
Q Consensus       134 ~~g~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~-----A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~  208 (541)
                      ..+.++|+.|+..|+.++|+.|++.+..    .+..+..+.||||+     |+..|+.+++++|++.|++++..+.. |.
T Consensus        33 ~~~~t~L~~A~~~~~~~ivk~Ll~~g~~----~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~-g~  107 (480)
T PHA03100         33 KKPVLPLYLAKEARNIDVVKILLDNGAD----INSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNN-GI  107 (480)
T ss_pred             cccchhhhhhhccCCHHHHHHHHHcCCC----CCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCC-CC
Confidence            4578999999999999999999998743    56778889999999     99999999999999999999877776 99


Q ss_pred             cHHHHHH--HcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcC--CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhC
Q 037006          209 TPLEAAA--AAGEALIVELLLARKASTERSETSTWGPIHLALRGG--HLEVLKLLLIKGANVNALTKDGNTALHLAVEDR  284 (541)
Q Consensus       209 t~L~~A~--~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g--~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g  284 (541)
                      ||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..|  +.+++++|+++|++++..+..|.||||+|+..|
T Consensus       108 tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~  187 (480)
T PHA03100        108 TPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG  187 (480)
T ss_pred             chhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC
Confidence            9999999  999999999999999999999999999999999999  999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCccCCCCC------CcHHHHHHHcCC--HHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHH
Q 037006          285 RRDCARLLLANGARPDIRNARDG------DTPLHITASLGY--EQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLF  356 (541)
Q Consensus       285 ~~~~v~~Ll~~g~~~~~~~~~~g------~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~  356 (541)
                      +.+++++|+++|++++..+ ..|      .||||.|+..|+  .+++++|++.|++++.+|..|.||||+|+..|+.+  
T Consensus       188 ~~~iv~~Ll~~ga~~~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~--  264 (480)
T PHA03100        188 NIDVIKFLLDNGADINAGD-IETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPE--  264 (480)
T ss_pred             CHHHHHHHHHcCCCccCCC-CCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH--
Confidence            9999999999999999877 556      899999999999  99999999999999999999999999998877654  


Q ss_pred             HHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC
Q 037006          357 DALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD  424 (541)
Q Consensus       357 ~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d  424 (541)
                                         ++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++++..+
T Consensus       265 -------------------iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~i~  313 (480)
T PHA03100        265 -------------------FVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTII  313 (480)
T ss_pred             -------------------HHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHHHH
Confidence                               5888999999999999999999999999999999999999999988654

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.1e-40  Score=342.77  Aligned_cols=303  Identities=22%  Similarity=0.312  Sum_probs=256.6

Q ss_pred             eecCcHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHH
Q 037006          133 MFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLE  212 (541)
Q Consensus       133 ~~~g~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~  212 (541)
                      ...+.+|||.|+..|+.++|+.|++.+.    +++..|..|.||||+||..|+.+++++|++.+.+.+.   ..+.++++
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~ga----dvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~~l~  106 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLTRGH----NVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV---FYTLVAIK  106 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc---ccchhhHH
Confidence            3457789999999999999999999874    3678899999999999999999999999998766554   23689999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcC--CHHHHHHHHHcCCCCCCCCCC-CChHHHHHHHhCCHHHH
Q 037006          213 AAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGG--HLEVLKLLLIKGANVNALTKD-GNTALHLAVEDRRRDCA  289 (541)
Q Consensus       213 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g--~~~iv~~Ll~~g~~~~~~d~~-g~t~L~~A~~~g~~~~v  289 (541)
                      .|+..++.+++++|+..+.+.....  ....+..+...+  +.+++++|+++|++++..+.. |.||||+|+..|+.+++
T Consensus       107 ~a~~~~~~ei~~~Ll~~~~~~~~~~--~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv  184 (477)
T PHA02878        107 DAFNNRNVEIFKIILTNRYKNIQTI--DLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLT  184 (477)
T ss_pred             HHHHcCCHHHHHHHHhCcccCcccC--cHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHH
Confidence            9999999999999998865433211  111222222222  345999999999999999999 99999999999999999


Q ss_pred             HHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHH
Q 037006          290 RLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAA  369 (541)
Q Consensus       290 ~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~  369 (541)
                      ++|++.|++++..+ ..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..+                  
T Consensus       185 ~~Ll~~gad~n~~d-~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~------------------  245 (477)
T PHA02878        185 ELLLSYGANVNIPD-KTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYC------------------  245 (477)
T ss_pred             HHHHHCCCCCCCcC-CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhc------------------
Confidence            99999999999887 78999999999999999999999999999999999999999998542                  


Q ss_pred             hhCCHHHHHHHHHcCCCCCCCCC-CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC-CHHHHHHHH
Q 037006          370 RKGEVRTMQRLIEAGAAINGKDL-HGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESG-HTDVTELLV  447 (541)
Q Consensus       370 ~~~~~~~~~~Ll~~g~~~~~~d~-~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g-~~~~v~~Ll  447 (541)
                        ++.+++++|+++|++++.++. .|.||||+|  .++.+++++|+++|+|+|..|..|.||||+|+..+ ..+++++|+
T Consensus       246 --~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li  321 (477)
T PHA02878        246 --KDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILI  321 (477)
T ss_pred             --CCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHH
Confidence              245678999999999999885 799999999  57899999999999999999999999999999864 567788777


Q ss_pred             HC-----CCCCcccCCCCCCHHHHH
Q 037006          448 KK-----GADVEARTSKNVSPMQIA  467 (541)
Q Consensus       448 ~~-----ga~~~~~~~~g~t~l~~A  467 (541)
                      .+     +++.+.++..|.++-..+
T Consensus       322 ~~~~~~~~~~~~~~~~~g~~~n~~~  346 (477)
T PHA02878        322 SNICLLKRIKPDIKNSEGFIDNMDC  346 (477)
T ss_pred             HHHHHHHhccCcccCcHHHHHHHHH
Confidence            65     467777777776554333

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-39  Score=309.89  Aligned_cols=236  Identities=17%  Similarity=0.199  Sum_probs=170.1

Q ss_pred             cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHc
Q 037006          183 QRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIK  262 (541)
Q Consensus       183 ~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~  262 (541)
                      .++.+++++|+++|++.  .+.. |.||||+|+..|+.+++++|+++|++++..+  ++||||+|+..|+.+++++|++.
T Consensus         9 ~~~~~~~~~Lis~~a~~--~D~~-G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~   83 (284)
T PHA02791          9 WKSKQLKSFLSSKDAFK--ADVH-GHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFS   83 (284)
T ss_pred             cCHHHHHHHHHhCCCCC--CCCC-CCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHC
Confidence            46667777777776642  3333 6777777777777777777777777666543  46777777777777777777777


Q ss_pred             CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCC-CcHHHHHHHcCCHHHHHHHHHcCCCccccccCCC
Q 037006          263 GANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDG-DTPLHITASLGYEQMVKLLLQKGANKYIRNKSGK  341 (541)
Q Consensus       263 g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~  341 (541)
                      |++++..|..|+||||+|+..|+.+++++|+++|++++..+ ..| .||||+|+..|+.+++++|++++.+.        
T Consensus        84 Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~-~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--------  154 (284)
T PHA02791         84 GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYG-KTGWKTSFYHAVMLNDVSIVSYFLSEIPST--------  154 (284)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccC-CCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--------
Confidence            77777777777777777777777777777777777766655 333 46777777777777777776654321        


Q ss_pred             chhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHHcCCCC
Q 037006          342 TAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKD-LHGWTALHRASFKGKIEVVRMLIDKGIDV  420 (541)
Q Consensus       342 t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d-~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~  420 (541)
                                                                      .| ..|+||||+|+..|+.+++++|+++|+++
T Consensus       155 ------------------------------------------------~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~  186 (284)
T PHA02791        155 ------------------------------------------------FDLAILLSCIHITIKNGHVDMMILLLDYMTST  186 (284)
T ss_pred             ------------------------------------------------cccccCccHHHHHHHcCCHHHHHHHHHCCCCC
Confidence                                                            12 24678888888888888888888888888


Q ss_pred             CCCCCCCChH-HHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCC
Q 037006          421 DAKDEDGYTA-LHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKD  487 (541)
Q Consensus       421 ~~~d~~g~tp-L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~  487 (541)
                      |.+|..|.|| ||+|+..|+.+++++|+++|++++.+|..| ++|      ++.|++++||++-++..
T Consensus       187 n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll~~~~~~~  247 (284)
T PHA02791        187 NTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIAKMIIEKHVEYK  247 (284)
T ss_pred             CcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHHHHHHHhhhhhc
Confidence            8888888876 888888888888888888888888888754 554      77888888888777654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3.4e-40  Score=311.42  Aligned_cols=201  Identities=33%  Similarity=0.417  Sum_probs=177.2

Q ss_pred             hhcCCceeecCcHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC-----CCCCccHHHHHHHcCCHHHHHHHHhcCCCCc
Q 037006          126 IDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSA-----DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVE  200 (541)
Q Consensus       126 ~~~~~~~~~~g~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~-----d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  200 (541)
                      +.+.+.....|.|||..|+++|+.++|++|+++.....+.....     .-+|-+||-.|+..||+++||.|+++|+++|
T Consensus        32 i~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN  111 (615)
T KOG0508|consen   32 IISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVN  111 (615)
T ss_pred             HHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccc
Confidence            33444555668899999999999999999999776554433222     2356789999999999999999999999999


Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHH
Q 037006          201 SQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLA  280 (541)
Q Consensus       201 ~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A  280 (541)
                      ..... ..|||-.||..|++++++||+++|+|++..+..|.|.||+||..||.+|+++|++.|+|+|.++..|+|+||.+
T Consensus       112 ~tT~T-NStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~c  190 (615)
T KOG0508|consen  112 DTTRT-NSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDC  190 (615)
T ss_pred             ccccc-CCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhh
Confidence            87776 78999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 037006          281 VEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQK  329 (541)
Q Consensus       281 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  329 (541)
                      ++.|+.+++++|+.+|+.++...  .|.|||..|+..|+.++|++|++.
T Consensus       191 aEsG~vdivq~Ll~~ga~i~~d~--~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  191 AESGSVDIVQLLLKHGAKIDVDG--HGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             hhcccHHHHHHHHhCCceeeecC--CCCchHHHHhhhcchHHHHHHhcC
Confidence            99999999999999999987554  599999999999999999999953

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-39  Score=338.41  Aligned_cols=288  Identities=20%  Similarity=0.298  Sum_probs=249.4

Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHH--cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc-----CCH
Q 037006          148 EMDDLREVLERSDPAWNPADSADAQGQTLLHIAIA--QRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAA-----GEA  220 (541)
Q Consensus       148 ~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~-----g~~  220 (541)
                      ..+.|+.|++...+     +.. ..+.|+++.+..  .++.++|++|+++|++++..+.. |.||||.|+.+     ++.
T Consensus        17 ~~~~v~~ll~~~~~-----~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~-g~TpL~~~~~n~~~~~~~~   89 (489)
T PHA02798         17 KLSTVKLLIKSCNP-----NEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNE-YSTPLCTILSNIKDYKHML   89 (489)
T ss_pred             cHHHHHHHHhcCCh-----hhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCC-CCChHHHHHHhHHhHHhHH
Confidence            67899999976532     111 456677764443  45899999999999999998877 89999998864     679


Q ss_pred             HHHHHHHHCCCCCCCCCCCCchHHHHHHhcC---CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCC---HHHHHHHHH
Q 037006          221 LIVELLLARKASTERSETSTWGPIHLALRGG---HLEVLKLLLIKGANVNALTKDGNTALHLAVEDRR---RDCARLLLA  294 (541)
Q Consensus       221 ~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g---~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~  294 (541)
                      +++++|+++|++++..+..|+||||+|+..+   +.+++++|+++|++++..|.+|.||||+|+..++   .+++++|++
T Consensus        90 ~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~  169 (489)
T PHA02798         90 DIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE  169 (489)
T ss_pred             HHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHH
Confidence            9999999999999999999999999999875   7899999999999999999999999999999998   999999999


Q ss_pred             CCCCCCccCCCCCCcHHHHHHHc----CCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHh
Q 037006          295 NGARPDIRNARDGDTPLHITASL----GYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAAR  370 (541)
Q Consensus       295 ~g~~~~~~~~~~g~t~L~~A~~~----g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~  370 (541)
                      .|++++..+...|.||||.++..    ++.+++++|+++|++++..+..|.++++.....              +..+..
T Consensus       170 ~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~--------------l~~~~~  235 (489)
T PHA02798        170 KGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNS--------------LLYDNK  235 (489)
T ss_pred             hCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHH--------------HHhhcc
Confidence            99999988767899999998765    479999999999999999999999887632110              122334


Q ss_pred             hCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCC
Q 037006          371 KGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKG  450 (541)
Q Consensus       371 ~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  450 (541)
                      .+..+++++|+. ++++|.+|..|+||||+|+..|+.+++++|+++|+|+|.+|..|+||||+|++.++.++++.|+++|
T Consensus       236 ~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~  314 (489)
T PHA02798        236 RFKKNILDFIFS-YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKK  314 (489)
T ss_pred             cchHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccC
Confidence            456677777655 6999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccC
Q 037006          451 ADVEART  457 (541)
Q Consensus       451 a~~~~~~  457 (541)
                      ++++...
T Consensus       315 ~~~~~i~  321 (489)
T PHA02798        315 PNKNTIS  321 (489)
T ss_pred             CCHHHHH
Confidence            9987543

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.2e-39  Score=337.93  Aligned_cols=282  Identities=19%  Similarity=0.240  Sum_probs=248.4

Q ss_pred             CHHHHHHHHhcCCCCcccCCCCCCcHHHHHH--HcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhc-----CCHHHHH
Q 037006          185 RPDIVQLLLEFGPDVESQGRCGCSTPLEAAA--AAGEALIVELLLARKASTERSETSTWGPIHLALRG-----GHLEVLK  257 (541)
Q Consensus       185 ~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~--~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~-----g~~~iv~  257 (541)
                      ..+.|+.|++.+. ++....  +.|+++.+.  ..++.+++++|+++|++++..+..|.||||.|+..     ++.++++
T Consensus        17 ~~~~v~~ll~~~~-~~~~~~--~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~   93 (489)
T PHA02798         17 KLSTVKLLIKSCN-PNEIVN--EYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVK   93 (489)
T ss_pred             cHHHHHHHHhcCC-hhhhcc--cchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHH
Confidence            5689999998753 333322  567766433  34589999999999999999999999999998864     6789999


Q ss_pred             HHHHcCCCCCCCCCCCChHHHHHHHhC---CHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCC---HHHHHHHHHcCC
Q 037006          258 LLLIKGANVNALTKDGNTALHLAVEDR---RRDCARLLLANGARPDIRNARDGDTPLHITASLGY---EQMVKLLLQKGA  331 (541)
Q Consensus       258 ~Ll~~g~~~~~~d~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~g~  331 (541)
                      +|+++|++++..|..|+||||+|+..+   +.+++++|+++|++++..+ ..|.||||+|+..++   .+++++|++.|+
T Consensus        94 ~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d-~~g~tpL~~a~~~~~~~~~~vv~~Ll~~ga  172 (489)
T PHA02798         94 ILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLD-KDGFTMLQVYLQSNHHIDIEIIKLLLEKGV  172 (489)
T ss_pred             HHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCCcchHHHHHHHHHhCC
Confidence            999999999999999999999999976   7899999999999999888 789999999999988   999999999999


Q ss_pred             Cccccc-cCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHH-------HHHh
Q 037006          332 NKYIRN-KSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALH-------RASF  403 (541)
Q Consensus       332 ~~~~~~-~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~-------~Aa~  403 (541)
                      +++..+ ..|.||+|.++..+                 ...++.+++++|+++|++++..+..|.++++       .+..
T Consensus       173 din~~~~~~~~t~Lh~~~~~~-----------------~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~  235 (489)
T PHA02798        173 DINTHNNKEKYDTLHCYFKYN-----------------IDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNK  235 (489)
T ss_pred             CcccccCcCCCcHHHHHHHhc-----------------cccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcc
Confidence            999875 57899999876532                 3345678899999999999999989999877       2445


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCC
Q 037006          404 KGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG  483 (541)
Q Consensus       404 ~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~g  483 (541)
                      .++.+++++|+. |+|+|.+|..|+||||+|+..|+.+++++|+++|||++.+|..|+|||++|+..++.++++.|+++|
T Consensus       236 ~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~  314 (489)
T PHA02798        236 RFKKNILDFIFS-YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKK  314 (489)
T ss_pred             cchHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccC
Confidence            678889988776 6999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 037006          484 ATKDG  488 (541)
Q Consensus       484 a~~~~  488 (541)
                      ++.+.
T Consensus       315 ~~~~~  319 (489)
T PHA02798        315 PNKNT  319 (489)
T ss_pred             CCHHH
Confidence            98763

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.6e-39  Score=305.20  Aligned_cols=236  Identities=19%  Similarity=0.179  Sum_probs=197.3

Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHH
Q 037006          146 DGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVEL  225 (541)
Q Consensus       146 ~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~  225 (541)
                      .++.+.+++|++++.      +..|..|.||||+|+..|+.+++++|++.|++++..+   +.||||+|+..|+.+++++
T Consensus         9 ~~~~~~~~~Lis~~a------~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d---~~TpLh~Aa~~g~~eiV~l   79 (284)
T PHA02791          9 WKSKQLKSFLSSKDA------FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE---NEFPLHQAATLEDTKIVKI   79 (284)
T ss_pred             cCHHHHHHHHHhCCC------CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC---CCCHHHHHHHCCCHHHHHH
Confidence            568899999998753      4578999999999999999999999999999887653   6899999999999999999


Q ss_pred             HHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC-hHHHHHHHhCCHHHHHHHHHCCCCCCccCC
Q 037006          226 LLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGN-TALHLAVEDRRRDCARLLLANGARPDIRNA  304 (541)
Q Consensus       226 Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~  304 (541)
                      |++.|++++..+..|+||||+|+..|+.+++++|+++|++++..+..|+ ||||+|+..|+.+++++|++++.+..  +.
T Consensus        80 LL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~--d~  157 (284)
T PHA02791         80 LLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DL  157 (284)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc--cc
Confidence            9999999999999999999999999999999999999999999998885 99999999999999999999876542  21


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcC
Q 037006          305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG  384 (541)
Q Consensus       305 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g  384 (541)
                      ..|.||||+|+..|+.+++++|+++|++++..+.                                              
T Consensus       158 ~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~----------------------------------------------  191 (284)
T PHA02791        158 AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNS----------------------------------------------  191 (284)
T ss_pred             ccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccC----------------------------------------------
Confidence            3478999999999999999888888887665444                                              


Q ss_pred             CCCCCCCCCCChH-HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Q 037006          385 AAINGKDLHGWTA-LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADV  453 (541)
Q Consensus       385 ~~~~~~d~~g~t~-L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~  453 (541)
                              .|.|| ||+|+.+|+.++|++|+++|+++|.+|..| |+|      ++.|++++||++-++.
T Consensus       192 --------~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        192 --------LLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             --------CCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHHHHHHHhhhhh
Confidence                    44443 677777777777777777777777776643 444      6667777777765544

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.1e-39  Score=327.49  Aligned_cols=241  Identities=29%  Similarity=0.366  Sum_probs=172.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHH
Q 037006          208 STPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRD  287 (541)
Q Consensus       208 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~  287 (541)
                      +++|+.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..+.||||+|+..|+.+
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~   82 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK   82 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence            45666666666666666666666666666666666666666666666666666666666666666677777777777777


Q ss_pred             HHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHH
Q 037006          288 CARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCV  367 (541)
Q Consensus       288 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~  367 (541)
                      ++++|++.|+..+......|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+             
T Consensus        83 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~-------------  149 (413)
T PHA02875         83 AVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK-------------  149 (413)
T ss_pred             HHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH-------------
Confidence            7777777766655443355777777777777777777777777777777777777777776655543             


Q ss_pred             HHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC-hHHHHHHHcCCHHHHHHH
Q 037006          368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGY-TALHCAVESGHTDVTELL  446 (541)
Q Consensus       368 a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~-tpL~~A~~~g~~~~v~~L  446 (541)
                              ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+..|+.+++++|
T Consensus       150 --------~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~L  221 (413)
T PHA02875        150 --------GIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF  221 (413)
T ss_pred             --------HHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHH
Confidence                    36667777777777778888888888888888888888888888887777664 677778888888888888


Q ss_pred             HHCCCCCccc---CCCCCCHHHHHHH
Q 037006          447 VKKGADVEAR---TSKNVSPMQIAEC  469 (541)
Q Consensus       447 l~~ga~~~~~---~~~g~t~l~~A~~  469 (541)
                      +++|+|++..   +..+.||++++..
T Consensus       222 l~~gad~n~~~~~~~~~~t~l~~~~~  247 (413)
T PHA02875        222 IKRGADCNIMFMIEGEECTILDMICN  247 (413)
T ss_pred             HHCCcCcchHhhcCCCchHHHHHHHh
Confidence            8888887754   5567788877654

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-37  Score=318.46  Aligned_cols=252  Identities=27%  Similarity=0.343  Sum_probs=225.5

Q ss_pred             CccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCC
Q 037006          173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGH  252 (541)
Q Consensus       173 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~  252 (541)
                      .+++||.|+..|+.+++++|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++..+..+.||||.|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~-g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYD-GISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCC-CCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence            468999999999999999999999999887765 8999999999999999999999999998888889999999999999


Q ss_pred             HHHHHHHHHcCCCCC-CCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 037006          253 LEVLKLLLIKGANVN-ALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGA  331 (541)
Q Consensus       253 ~~iv~~Ll~~g~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  331 (541)
                      .+++++|++.|.+++ ..+.+|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|+
T Consensus        81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~-~~g~tpLh~A~~~~~~~~v~~Ll~~g~  159 (413)
T PHA02875         81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPN-TDKFSPLHLAVMMGDIKGIELLIDHKA  159 (413)
T ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            999999999987764 456789999999999999999999999999999877 789999999999999999999999999


Q ss_pred             CccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCC-ChHHHHHHhcCCHHHH
Q 037006          332 NKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHG-WTALHRASFKGKIEVV  410 (541)
Q Consensus       332 ~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g-~t~L~~Aa~~g~~~~v  410 (541)
                      +++..|..|.||||+|+..|+.+                     ++++|+++|++++..+..| .||+|+|+..|+.+++
T Consensus       160 ~~~~~d~~g~TpL~~A~~~g~~e---------------------iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv  218 (413)
T PHA02875        160 CLDIEDCCGCTPLIIAMAKGDIA---------------------ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV  218 (413)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHH---------------------HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHH
Confidence            99999999999999988776654                     5788999999999998776 5899999999999999


Q ss_pred             HHHHHcCCCCCCC---CCCCChHHHHHHHc---CCHHHHHHHH
Q 037006          411 RMLIDKGIDVDAK---DEDGYTALHCAVES---GHTDVTELLV  447 (541)
Q Consensus       411 ~~Ll~~g~d~~~~---d~~g~tpL~~A~~~---g~~~~v~~Ll  447 (541)
                      ++|+++|+|+|..   +..+.|||+++...   ...+.++.++
T Consensus       219 ~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li  261 (413)
T PHA02875        219 RLFIKRGADCNIMFMIEGEECTILDMICNMCTNLESEAIDALI  261 (413)
T ss_pred             HHHHHCCcCcchHhhcCCCchHHHHHHHhhcCCcccHHHHHHH
Confidence            9999999999865   66889999987643   3456666555

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.5e-37  Score=314.61  Aligned_cols=357  Identities=15%  Similarity=0.142  Sum_probs=240.4

Q ss_pred             hhhhhhcCCcee--ecCcHHHHHHHHcCC----HHHHHHHHhcCCCCCCCCCCCCCCCccHHHH-HHHcCCHHHHHHHHh
Q 037006          122 KQVFIDSGIKIM--FVGSPVLVLLVKDGE----MDDLREVLERSDPAWNPADSADAQGQTLLHI-AIAQRRPDIVQLLLE  194 (541)
Q Consensus       122 ~~~~~~~~~~~~--~~g~~~l~~a~~~g~----~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~-A~~~g~~~~v~~Ll~  194 (541)
                      .++++++|+...  +.|.|||+.-....+    .+++-.|++..       +..+-+|.+++|+ |+..|++|+|++|++
T Consensus        21 ~~~l~~~g~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~n~~~~~~~~~~~s~n~~lElvk~LI~   93 (631)
T PHA02792         21 AQSLIESGANPLYEYDGETPLKAYVTKKNNNIKNDVVILLLSSV-------DYKNINDFDIFEYLCSDNIDIELLKLLIS   93 (631)
T ss_pred             HHHHHHcCCCcccccCCCccHHHHHhhhhhhHHHHHHHHHHhCC-------CcCccCCccHHHHHHHhcccHHHHHHHHH
Confidence            578899997654  347799988765443    33444444432       3466778889966 556789999999999


Q ss_pred             cCCCCcccCCCCCCcHHHHHHH-cCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCH-HHHHHHH--HcCCCCCCCC
Q 037006          195 FGPDVESQGRCGCSTPLEAAAA-AGEALIVELLLARKASTERSETSTWGPIHLALRGGHL-EVLKLLL--IKGANVNALT  270 (541)
Q Consensus       195 ~g~~~~~~~~~~~~t~L~~A~~-~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~-~iv~~Ll--~~g~~~~~~d  270 (541)
                      +|++++.++.. +.+++++|+. .++.|++++|+++|++++..+..|.|||+.-+.+... +.-..+-  +.|..+|..|
T Consensus        94 ~GAdvN~~~n~-~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  172 (631)
T PHA02792         94 KGLEINSIKNG-INIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDD  172 (631)
T ss_pred             cCCCcccccCC-CCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCC
Confidence            99999998886 8899999965 6999999999999999988889999998876553321 1112221  1244567888


Q ss_pred             CCCChHHHHHHHhC-------CHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCcc-------
Q 037006          271 KDGNTALHLAVEDR-------RRDCARLLLANGARPDIRNARDGDTPLHITASLG--YEQMVKLLLQKGANKY-------  334 (541)
Q Consensus       271 ~~g~t~L~~A~~~g-------~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~-------  334 (541)
                      ..|.||||+|+..+       +.+++++|+++|++++..+ ..|.||||+|+...  +.+++++|++...+-.       
T Consensus       173 ~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d-~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~  251 (631)
T PHA02792        173 RMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYT-YREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILS  251 (631)
T ss_pred             CCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccC-CCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHH
Confidence            99999999999999       8999999999999999888 67999999999999  8999999987422100       


Q ss_pred             ------cccc-------------CCCchh------------------------------HHHHHcC--CHHHHHHhhc--
Q 037006          335 ------IRNK-------------SGKTAY------------------------------DVAAECG--HSRLFDALKL--  361 (541)
Q Consensus       335 ------~~~~-------------~g~t~l------------------------------~~A~~~g--~~~~~~~l~~--  361 (541)
                            .+..             .|.++.                              |.-..++  +.++++++..  
T Consensus       252 ~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~G  331 (631)
T PHA02792        252 NYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEG  331 (631)
T ss_pred             HHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCC
Confidence                  0000             111110                              0001111  1222222211  


Q ss_pred             --------CCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCC--ChHHHHHHhcCCH---HHHHHHHHcCCCCCCCCCCCC
Q 037006          362 --------GDSLCVAARKGEVRTMQRLIEAGAAINGKDLHG--WTALHRASFKGKI---EVVRMLIDKGIDVDAKDEDGY  428 (541)
Q Consensus       362 --------~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g--~t~L~~Aa~~g~~---~~v~~Ll~~g~d~~~~d~~g~  428 (541)
                              ...++.|+..|+.+++++|+++|++++.+|.+|  .||||.|+..+..   +++++|+++|+|+|.+|..|.
T Consensus       332 a~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~  411 (631)
T PHA02792        332 ATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGR  411 (631)
T ss_pred             CccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCc
Confidence                    112455666666666776666666666666543  4666665554443   345666666666666666666


Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHH----------cCcHHHHHHHHhCCCCCC
Q 037006          429 TALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAEC----------LHYAGISRILMHGGATKD  487 (541)
Q Consensus       429 tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~----------~~~~~i~~~Ll~~ga~~~  487 (541)
                      ||||+|+..++.+++++|+++|++++.+|..|.|||++|..          ....+++++|+++|.+.+
T Consensus       412 TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        412 SILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            77777666666666676666666666666666677666654          112445666666665543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.2e-38  Score=260.07  Aligned_cols=206  Identities=34%  Similarity=0.473  Sum_probs=159.5

Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCC-CCCCCCC-CCChHHHHHHHhCCHHHHHHHH-HCCCCCCccCCCCCCcHHHHHHHcC
Q 037006          242 GPIHLALRGGHLEVLKLLLIKGA-NVNALTK-DGNTALHLAVEDRRRDCARLLL-ANGARPDIRNARDGDTPLHITASLG  318 (541)
Q Consensus       242 t~L~~Aa~~g~~~iv~~Ll~~g~-~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~g~t~L~~A~~~g  318 (541)
                      ++.+.++...-..-++.+++... .++.++. +|+|||||||..|+.+++.+|+ +.+..+|..+ ..|+||||+|+..|
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkD-daGWtPlhia~s~g   83 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKD-DAGWTPLHIAASNG   83 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCcc-ccCCchhhhhhhcC
Confidence            34455555555555555555533 4555544 7777777777777777777777 4566666665 56788888888888


Q ss_pred             CHHHHHHHHHc-CCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChH
Q 037006          319 YEQMVKLLLQK-GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTA  397 (541)
Q Consensus       319 ~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~  397 (541)
                      +.++|+.|+.+ |+|+|..+..|.|+||+|+.+|..+                     +.++|+++|+.++.+|..|.||
T Consensus        84 ~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~e---------------------IaqlLle~ga~i~~kD~~~qtp  142 (226)
T KOG4412|consen   84 NDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLE---------------------IAQLLLEKGALIRIKDKQGQTP  142 (226)
T ss_pred             cHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhh---------------------HHHHHHhcCCCCcccccccCch
Confidence            88888888877 7888888888888888777665544                     4677788888888888889999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHc
Q 037006          398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECL  470 (541)
Q Consensus       398 L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  470 (541)
                      ||.||..|.++++++|+..|+.+|.+|..|+||||.|..-|+.++..+|+++||+++..|+.| ||+..|+-.
T Consensus       143 lHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  143 LHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             hHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHHH
Confidence            999999999999999999999999999999999999988889999999999999999999988 998877643

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=9.9e-37  Score=288.02  Aligned_cols=217  Identities=32%  Similarity=0.424  Sum_probs=188.0

Q ss_pred             HHHHHHcCCHHHHHHHHhcCC-CCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHh-cCCCCcccC-------CCCCCcH
Q 037006          140 LVLLVKDGEMDDLREVLERSD-PAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLE-FGPDVESQG-------RCGCSTP  210 (541)
Q Consensus       140 l~~a~~~g~~~~v~~ll~~~~-~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------~~~~~t~  210 (541)
                      ...|++.|.+..+..|+.+.. ......-..+.+|.|||-.||++||.++|++|++ .++++....       ...|.+|
T Consensus         8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen    8 VINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCch
Confidence            347999999999988876543 2222234456789999999999999999999998 455543221       1237789


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHH
Q 037006          211 LEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCAR  290 (541)
Q Consensus       211 L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~  290 (541)
                      |-.|+..||++||+.|+++|+++|.......|||-.||.-|++|+||+|+++|+|++..|..|.|+||+||..|+.++++
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~q  167 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQ  167 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHH
Confidence            99999999999999999999999999888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHH
Q 037006          291 LLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDA  358 (541)
Q Consensus       291 ~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~  358 (541)
                      +|++.|+|+|.++ ..|+|+||.|++.|+.+++++|+.+|+.+.. |..|.|||..|+..|+.++++.
T Consensus       168 yLle~gADvn~ks-~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~  233 (615)
T KOG0508|consen  168 YLLEQGADVNAKS-YKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVER  233 (615)
T ss_pred             HHHHhCCCcchhc-ccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHH
Confidence            9999999999988 7899999999999999999999999998764 5569999988888777766443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.6e-37  Score=254.93  Aligned_cols=206  Identities=32%  Similarity=0.458  Sum_probs=156.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCC-CCchHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCChHHHHHHHhC
Q 037006          208 STPLEAAAAAGEALIVELLLARKA-STERSET-STWGPIHLALRGGHLEVLKLLLI-KGANVNALTKDGNTALHLAVEDR  284 (541)
Q Consensus       208 ~t~L~~A~~~g~~~iv~~Ll~~g~-~~~~~~~-~~~t~L~~Aa~~g~~~iv~~Ll~-~g~~~~~~d~~g~t~L~~A~~~g  284 (541)
                      .++.+.++......-++-+++... +.+.++. +|+||||+||..|+.+++.+|++ .+..+|.+|..||||||+|+..|
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g   83 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNG   83 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcC
Confidence            344555555555555555555544 4454444 67777777777777777777774 36777777777888888888888


Q ss_pred             CHHHHHHHHHC-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCC
Q 037006          285 RRDCARLLLAN-GARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGD  363 (541)
Q Consensus       285 ~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~  363 (541)
                      +.++|+.|+.+ |+++|..+ ..|.|+||+|+..|+.+++++|+++|+.++++|..|.||||.|+..|..+         
T Consensus        84 ~~evVk~Ll~r~~advna~t-n~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklk---------  153 (226)
T KOG4412|consen   84 NDEVVKELLNRSGADVNATT-NGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLK---------  153 (226)
T ss_pred             cHHHHHHHhcCCCCCcceec-CCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchh---------
Confidence            88888888877 78887776 67888888888888888888888888888888888888888777665554         


Q ss_pred             chHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHH
Q 037006          364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVE  436 (541)
Q Consensus       364 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~  436 (541)
                                  ++++|+..|+.+|.+|..|+||||.|..-|+.++..+|+++|++++..|+.| ||+..|+-
T Consensus       154 ------------vie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  154 ------------VIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             ------------hHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence                        4777888888888889999999999977889999999999999999999888 88776643

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=5e-34  Score=290.58  Aligned_cols=295  Identities=14%  Similarity=0.103  Sum_probs=239.2

Q ss_pred             cCcHHHHH-HHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHH-cCCHHHHHHHHhcCCCCcc-----------
Q 037006          135 VGSPVLVL-LVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIA-QRRPDIVQLLLEFGPDVES-----------  201 (541)
Q Consensus       135 ~g~~~l~~-a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~-~g~~~~v~~Ll~~g~~~~~-----------  201 (541)
                      -|-.+++. |...|++|+|+.|++++.    +++.++..+.+|+|+|+. .++.|+|++|++.|+++..           
T Consensus        70 ~~~~~~~~~~s~n~~lElvk~LI~~GA----dvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~  145 (631)
T PHA02792         70 NDFDIFEYLCSDNIDIELLKLLISKGL----EINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIE  145 (631)
T ss_pred             CCccHHHHHHHhcccHHHHHHHHHcCC----CcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhh
Confidence            35668876 456789999999999864    377888889999999976 6999999999999987321           


Q ss_pred             ------------------------cCCCCCCcHHHHHHHcC-------CHHHHHHHHHCCCCCCCCCCCCchHHHHHHhc
Q 037006          202 ------------------------QGRCGCSTPLEAAAAAG-------EALIVELLLARKASTERSETSTWGPIHLALRG  250 (541)
Q Consensus       202 ------------------------~~~~~~~t~L~~A~~~g-------~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~  250 (541)
                                              -+...|.||||+|+..+       +.|++++|+++|++++..+..|.||||+|+..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~  225 (631)
T PHA02792        146 QITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDK  225 (631)
T ss_pred             hcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHc
Confidence                                    11223889999999999       89999999999999999999999999999999


Q ss_pred             C--CHHHHHHHHHcCCCCCC-------------------CCC-------CCC----------------------------
Q 037006          251 G--HLEVLKLLLIKGANVNA-------------------LTK-------DGN----------------------------  274 (541)
Q Consensus       251 g--~~~iv~~Ll~~g~~~~~-------------------~d~-------~g~----------------------------  274 (541)
                      .  +.|++++|++...+...                   .|.       .|.                            
T Consensus       226 ~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  305 (631)
T PHA02792        226 CDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDS  305 (631)
T ss_pred             ccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHH
Confidence            9  78999999875221000                   000       011                            


Q ss_pred             --hHHHHHHHhC--CHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCC--CchhHHHH
Q 037006          275 --TALHLAVEDR--RRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSG--KTAYDVAA  348 (541)
Q Consensus       275 --t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~l~~A~  348 (541)
                        ..||.-...+  +.+++++|+++|++...   ......++.|+..|+.+++++|+++|++++..|..|  .||||.|+
T Consensus       306 ~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r---~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~  382 (631)
T PHA02792        306 IQDLLSEYVSYHTVYINVIKCMIDEGATLYR---FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTL  382 (631)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHCCCcccc---CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHH
Confidence              1233333444  66899999999999752   235667899999999999999999999999998875  58898876


Q ss_pred             HcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Q 037006          349 ECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGY  428 (541)
Q Consensus       349 ~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~  428 (541)
                      .....+.                  .+++++|+++|+++|.+|..|+||||+|+..++.+++++|+++|++++.+|..|+
T Consensus       383 ~n~~~~v------------------~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~  444 (631)
T PHA02792        383 SIHESDV------------------LSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGS  444 (631)
T ss_pred             HhccHhH------------------HHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence            5444332                  2468899999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHH--cC--------CHHHHHHHHHCCCCCc
Q 037006          429 TALHCAVE--SG--------HTDVTELLVKKGADVE  454 (541)
Q Consensus       429 tpL~~A~~--~g--------~~~~v~~Ll~~ga~~~  454 (541)
                      ||||+|+.  .+        ..+++++|+++|.+++
T Consensus       445 TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        445 TCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             CHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            99999986  22        3577999999998875

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=4e-35  Score=289.42  Aligned_cols=220  Identities=35%  Similarity=0.478  Sum_probs=199.9

Q ss_pred             chHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCC
Q 037006          241 WGPIHLALRGGHLEVLKLLLIK-GANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGY  319 (541)
Q Consensus       241 ~t~L~~Aa~~g~~~iv~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~  319 (541)
                      ...+..|+..|.++-++.|++. |.+++..|.+|.|+||||+.+++.+++++|+++|+++|.....-+.||||+|+++|+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            4468889999999999999999 999999999999999999999999999999999999999887789999999999999


Q ss_pred             HHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHH
Q 037006          320 EQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALH  399 (541)
Q Consensus       320 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~  399 (541)
                      ..+|.+|+++|||++.+|..|.+|+|.|+..|+.-+                     +-||+.+|++++.+|.+|+||||
T Consensus       125 ~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~---------------------vayll~~~~d~d~~D~~grTpLm  183 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTAL---------------------VAYLLSKGADIDLRDNNGRTPLM  183 (600)
T ss_pred             HHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHH---------------------HHHHHHhcccCCCcCCCCCCHHH
Confidence            999999999999999999999999999988777654                     77889999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHH
Q 037006          400 RASFKGKIEVVRMLIDKGIDVDAKD-EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRI  478 (541)
Q Consensus       400 ~Aa~~g~~~~v~~Ll~~g~d~~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~  478 (541)
                      +|+.+|+...+..|++-|++++.+| ..|+||||+|+..|+..++.+|++.|++.+..|.+|.||+++|...   .++..
T Consensus       184 wAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~---~~~~~  260 (600)
T KOG0509|consen  184 WAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER---KLVAA  260 (600)
T ss_pred             HHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh---hhHHH
Confidence            9999999888999999999999988 8999999999999999999988888899999999999999999776   44444


Q ss_pred             HHhCCC
Q 037006          479 LMHGGA  484 (541)
Q Consensus       479 Ll~~ga  484 (541)
                      +...+.
T Consensus       261 ~~h~~~  266 (600)
T KOG0509|consen  261 LHHDVV  266 (600)
T ss_pred             hhccHH
Confidence            444433

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=1.4e-33  Score=278.50  Aligned_cols=209  Identities=34%  Similarity=0.467  Sum_probs=198.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC
Q 037006          139 VLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAG  218 (541)
Q Consensus       139 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g  218 (541)
                      .+..|++.|+++.++.+++...   ..++..|.+|.|+|||||.+++++++++|+++|+++|......+.||||+|+++|
T Consensus        47 ~~v~A~q~G~l~~v~~lve~~g---~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   47 DIVKATQYGELETVKELVESEG---ESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhHhhcchHHHHHHHHhhcC---cCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            4678999999999999999842   3377788999999999999999999999999999999999777999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCC
Q 037006          219 EALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGAR  298 (541)
Q Consensus       219 ~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  298 (541)
                      ++.+|++|+++|++++..|.+|.++||.|+..|+.-+|-+|+.+|+++|.+|.+|+||||||+..|+...++.|+..|+.
T Consensus       124 ~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~  203 (600)
T KOG0509|consen  124 HISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS  203 (600)
T ss_pred             cHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHc
Q 037006          299 PDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAEC  350 (541)
Q Consensus       299 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  350 (541)
                      +...++..|.||||+|+..|+..++.+|++.|++.+..|.+|.||+.+|.+.
T Consensus       204 ~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  204 LLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9999989999999999999999999988888899999999999999999877

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.98  E-value=5.2e-33  Score=284.54  Aligned_cols=321  Identities=27%  Similarity=0.286  Sum_probs=296.6

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHH
Q 037006          137 SPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAA  216 (541)
Q Consensus       137 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~  216 (541)
                      .+.|..||+.|+.|+++.++.++..    +.-+|..|++||.+|+..||..+|+.|+.+.++++.+.+..+.|+|.+||.
T Consensus       758 ~t~LT~acaggh~e~vellv~rgan----iehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacs  833 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLVVRGAN----IEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACS  833 (2131)
T ss_pred             cccccccccCccHHHHHHHHHhccc----ccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecC
Confidence            3678999999999999999988743    677899999999999999999999999999999999988889999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCC--CCCChHHHHHHHhCCHHHHHHHHH
Q 037006          217 AGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALT--KDGNTALHLAVEDRRRDCARLLLA  294 (541)
Q Consensus       217 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d--~~g~t~L~~A~~~g~~~~v~~Ll~  294 (541)
                      .|+.++|++||..|++-..++...+|||.+|...|..++++.|+..|+.++.+.  +.|-.||+.|.++||.+.++.|++
T Consensus       834 ggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~  913 (2131)
T KOG4369|consen  834 GGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQ  913 (2131)
T ss_pred             CCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999998774  678999999999999999999999


Q ss_pred             CCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCH
Q 037006          295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEV  374 (541)
Q Consensus       295 ~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~  374 (541)
                      .|.++|.....+.+|+|-+|+..|+.+++.+|+...+++..+.+.|.|||+-++..|..+                    
T Consensus       914 ~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvd--------------------  973 (2131)
T KOG4369|consen  914 PGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVD--------------------  973 (2131)
T ss_pred             ccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccc--------------------
Confidence            999999988888999999999999999999999999999999999999988777766654                    


Q ss_pred             HHHHHHHHcCCCCCCCC--CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCC
Q 037006          375 RTMQRLIEAGAAINGKD--LHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGAD  452 (541)
Q Consensus       375 ~~~~~Ll~~g~~~~~~d--~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~  452 (541)
                       +=..|+..|+|+|...  ....|+|-+++..||...|..|++..+.++.++..|+|+|++|+..|+...+.+|+++++|
T Consensus       974 -vg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad 1052 (2131)
T KOG4369|consen  974 -VGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVAD 1052 (2131)
T ss_pred             -cchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccC
Confidence             4566899999988754  4556899999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCCCHHHHHHHcCcHHHHHHHHhC
Q 037006          453 VEARTSKNVSPMQIAECLHYAGISRILMHG  482 (541)
Q Consensus       453 ~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~  482 (541)
                      ++..|+...+++..|.+.|+.+||++....
T Consensus      1053 ~d~qdnr~~S~~maafRKgh~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1053 ADQQDNRTNSRTMAAFRKGHFAIVKKMVPP 1082 (2131)
T ss_pred             hhhhhcccccccHHHHHhchhheeccccCc
Confidence            999999999999999999999999887653

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.9e-31  Score=260.35  Aligned_cols=206  Identities=14%  Similarity=0.146  Sum_probs=120.9

Q ss_pred             HHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC------CCCCCCchHHHHHHh--cCCHHHHHHH
Q 037006          188 IVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTE------RSETSTWGPIHLALR--GGHLEVLKLL  259 (541)
Q Consensus       188 ~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~------~~~~~~~t~L~~Aa~--~g~~~iv~~L  259 (541)
                      +-++++.+|++++..... +     +|+..+..|++++|+++|++++      ..+..++|+||.++.  .|+.+++++|
T Consensus        64 ~~~~~~~~~~~i~~~~~~-~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~L  137 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVD-R-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFM  137 (437)
T ss_pred             HHHHHHHcCcchhhhhhh-h-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHH
Confidence            346777777777755544 2     6777777777777777777766      556666777777776  6677777777


Q ss_pred             HHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCC-----CCCCcHHHHHHHcCCHHHHHHHHHcCCCcc
Q 037006          260 LIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNA-----RDGDTPLHITASLGYEQMVKLLLQKGANKY  334 (541)
Q Consensus       260 l~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-----~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  334 (541)
                      +++|++++..  ++.||+|+|+..++.+++++|+++|++......     ..+.|++|.|+..++.+++++|+++|++++
T Consensus       138 I~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN  215 (437)
T PHA02795        138 VDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDIN  215 (437)
T ss_pred             HHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcC
Confidence            7777777653  346677777777777777777777664321110     124455555555555555555555555555


Q ss_pred             ccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCC--------
Q 037006          335 IRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGK--------  406 (541)
Q Consensus       335 ~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~--------  406 (541)
                      .+|..|.||||+|+..|+.+                     ++++|+++|++++.+|..|+||||+|+..|+        
T Consensus       216 ~kD~~G~TpLh~Aa~~g~~e---------------------iVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~  274 (437)
T PHA02795        216 QLDAGGRTLLYRAIYAGYID---------------------LVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETH  274 (437)
T ss_pred             cCCCCCCCHHHHHHHcCCHH---------------------HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccH
Confidence            55555555555554443332                     2444555555555555555555555555542        


Q ss_pred             HHHHHHHHHcCCCCCC
Q 037006          407 IEVVRMLIDKGIDVDA  422 (541)
Q Consensus       407 ~~~v~~Ll~~g~d~~~  422 (541)
                      .+++++|+++|++++.
T Consensus       275 ~eIvelLL~~gadI~~  290 (437)
T PHA02795        275 LKILEILLREPLSIDC  290 (437)
T ss_pred             HHHHHHHHhCCCCCCc
Confidence            3555555555555543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=4.2e-30  Score=253.11  Aligned_cols=235  Identities=16%  Similarity=0.151  Sum_probs=195.8

Q ss_pred             HHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCC------CCCCCCChHHHHHHH--hCCHHHHHHHH
Q 037006          222 IVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVN------ALTKDGNTALHLAVE--DRRRDCARLLL  293 (541)
Q Consensus       222 iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~------~~d~~g~t~L~~A~~--~g~~~~v~~Ll  293 (541)
                      .-+|++.+|++++....++     +|+..+..|++++|+.+|++++      .++..++|+||+++.  .|+.++|++|+
T Consensus        64 ~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI  138 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV  138 (437)
T ss_pred             HHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence            6689999999999887766     8999999999999999999988      788899999999999  89999999999


Q ss_pred             HCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCC
Q 037006          294 ANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGE  373 (541)
Q Consensus       294 ~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~  373 (541)
                      ++|++++..   ++.||+|.|+..++.+++++|+++|++...   .+.++++.+..            ..+++.++..++
T Consensus       139 ~~GADIn~~---~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n---~~~~~l~~~~~------------~t~l~~a~~~~~  200 (437)
T PHA02795        139 DHGAVIYKI---ECLNAYFRGICKKESSVVEFILNCGIPDEN---DVKLDLYKIIQ------------YTRGFLVDEPTV  200 (437)
T ss_pred             HCCCCCCCC---CCCCHHHHHHHcCcHHHHHHHHhcCCcccc---cccchhhhhhc------------cchhHHHHhcCH
Confidence            999999874   468999999999999999999999985422   22233322111            122444556667


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCC--------HHHHHH
Q 037006          374 VRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGH--------TDVTEL  445 (541)
Q Consensus       374 ~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~--------~~~v~~  445 (541)
                      .+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+        .+++++
T Consensus       201 ~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvel  280 (437)
T PHA02795        201 LEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEI  280 (437)
T ss_pred             HHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHH
Confidence            788999999999999999999999999999999999999999999999999999999999999884        699999


Q ss_pred             HHHCCCCCcccCCCCCCHHHHHHHc---CcHHHHHHHHhCCCCCC
Q 037006          446 LVKKGADVEARTSKNVSPMQIAECL---HYAGISRILMHGGATKD  487 (541)
Q Consensus       446 Ll~~ga~~~~~~~~g~t~l~~A~~~---~~~~i~~~Ll~~ga~~~  487 (541)
                      |+++|++++   .     +..+..+   .+.++++.++++++..+
T Consensus       281 LL~~gadI~---~-----~~~~~~~~~~~n~~~ik~lI~y~~~ld  317 (437)
T PHA02795        281 LLREPLSID---C-----IKLAILNNTIENHDVIKLCIKYFMMVD  317 (437)
T ss_pred             HHhCCCCCC---c-----hhHHhhhcccchHHHHHHHHHHHHhcc
Confidence            999999773   2     3334322   36889999998887554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.5e-29  Score=230.98  Aligned_cols=178  Identities=19%  Similarity=0.242  Sum_probs=133.3

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCccccc-cCCCchhHHHH
Q 037006          272 DGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLG--YEQMVKLLLQKGANKYIRN-KSGKTAYDVAA  348 (541)
Q Consensus       272 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~  348 (541)
                      .+.|||++|+..|+.++|+.|++.+   +..+ ..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+|+
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~~---n~~~-~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKFV---NDCN-DLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHhh---hccC-ccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence            3457777777777777777776642   2233 45677777777643  6777777777777777665 36777777765


Q ss_pred             HcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHh--cCCHHHHHHHHHcCCCCCCCCCC
Q 037006          349 ECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASF--KGKIEVVRMLIDKGIDVDAKDED  426 (541)
Q Consensus       349 ~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~--~g~~~~v~~Ll~~g~d~~~~d~~  426 (541)
                      ..++                  .++.+++++|+++|+++|.+|..|.||||.|+.  .++.+++++|+++|++++.+|..
T Consensus        96 ~~~~------------------~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~  157 (209)
T PHA02859         96 SFNK------------------NVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFD  157 (209)
T ss_pred             HhCc------------------cccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCC
Confidence            4321                  123466777888888888888888888888875  46889999999999999999999


Q ss_pred             CChHHHH-HHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcC
Q 037006          427 GYTALHC-AVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH  471 (541)
Q Consensus       427 g~tpL~~-A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  471 (541)
                      |.||||. |+..++.+++++|+++|++++.+|..|+|||++|...+
T Consensus       158 g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        158 NNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            9999995 56678899999999999999999999999999997654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.97  E-value=6.5e-31  Score=269.28  Aligned_cols=320  Identities=26%  Similarity=0.284  Sum_probs=290.6

Q ss_pred             CCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCchHHHHHH
Q 037006          170 DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTER-SETSTWGPIHLAL  248 (541)
Q Consensus       170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~-~~~~~~t~L~~Aa  248 (541)
                      ..+-.|+|..||..||.|+|++|+..|+++..++.. |.+||..|+..||..+|+.|+.+-++++. .|..+.|+|.+||
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rganiehrdkk-gf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKK-GFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcccccccccc-cchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            346779999999999999999999999999998887 99999999999999999999999999875 5778899999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHHH
Q 037006          249 RGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNA-RDGDTPLHITASLGYEQMVKLLL  327 (541)
Q Consensus       249 ~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll  327 (541)
                      ..|..++|++||..|++-..++-...|||.+|...|..+++..|+.+|+.++.+.. +.|.+||++|..+|+.+.++.|+
T Consensus       833 sggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll  912 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLL  912 (2131)
T ss_pred             CCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999987653 45899999999999999999999


Q ss_pred             HcCCCcccc-ccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCC
Q 037006          328 QKGANKYIR-NKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGK  406 (541)
Q Consensus       328 ~~g~~~~~~-~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~  406 (541)
                      +.|.|+|.. ..+.+|+|.+|+..|+.                     +++..|+...+++..+-..|.|||+.+|..|.
T Consensus       913 ~~gsdiNaqIeTNrnTaltla~fqgr~---------------------evv~lLLa~~anvehRaktgltplme~AsgGy  971 (2131)
T KOG4369|consen  913 QPGSDINAQIETNRNTALTLALFQGRP---------------------EVVFLLLAAQANVEHRAKTGLTPLMEMASGGY  971 (2131)
T ss_pred             cccchhccccccccccceeeccccCcc---------------------hHHHHHHHHhhhhhhhcccCCcccchhhcCCc
Confidence            999998854 45567787777665555                     45777888889998899999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCC--CCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCC
Q 037006          407 IEVVRMLIDKGIDVDAK--DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA  484 (541)
Q Consensus       407 ~~~v~~Ll~~g~d~~~~--d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga  484 (541)
                      +|+=++||..|+|+|.-  -..-.|+|.+++..||.+.|++|+...|.++.+|++|.|+|.+|+..|+...+.+|+++++
T Consensus       972 vdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~a 1051 (2131)
T KOG4369|consen  972 VDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVA 1051 (2131)
T ss_pred             cccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhccc
Confidence            99999999999998853  2345689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccchhhhhhcCCCcccccc
Q 037006          485 TKDGIQQTNLRQVSIQFGNGKVGRDQM  511 (541)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (541)
                      +.+..+.........+|.+++..++..
T Consensus      1052 d~d~qdnr~~S~~maafRKgh~~iVk~ 1078 (2131)
T KOG4369|consen 1052 DADQQDNRTNSRTMAAFRKGHFAIVKK 1078 (2131)
T ss_pred             ChhhhhcccccccHHHHHhchhheecc
Confidence            999999888889999999999887644

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=5.4e-29  Score=228.72  Aligned_cols=179  Identities=18%  Similarity=0.272  Sum_probs=149.4

Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhC--CHHHHHHHHHCCCCCCccCCCCCCcHHHHHH
Q 037006          238 TSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDR--RRDCARLLLANGARPDIRNARDGDTPLHITA  315 (541)
Q Consensus       238 ~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~  315 (541)
                      ..+++|||+|+..|+.++|+.|++.   ++..|..|.||||+|+..+  +.+++++|+++|++++..+...|.||||+|+
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence            3457788888888888888888765   4567778888888888754  7888899999888888776457889999877


Q ss_pred             Hc---CCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCC
Q 037006          316 SL---GYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDL  392 (541)
Q Consensus       316 ~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~  392 (541)
                      ..   ++.+++++|+++|++++..|..|.||||+|+..                   ..++.+++++|+++|++++.+|.
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~-------------------~~~~~~iv~~Li~~gadin~~d~  156 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCN-------------------FNVRINVIKLLIDSGVSFLNKDF  156 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh-------------------ccCCHHHHHHHHHcCCCcccccC
Confidence            53   468999999999999999999999999987642                   12456778899999999999999


Q ss_pred             CCChHHHH-HHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC
Q 037006          393 HGWTALHR-ASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESG  438 (541)
Q Consensus       393 ~g~t~L~~-Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g  438 (541)
                      .|.||||. |+..++.+++++|+++|++++.+|..|+||||+|+.++
T Consensus       157 ~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        157 DNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            99999995 56788999999999999999999999999999998765

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.95  E-value=6.8e-29  Score=212.60  Aligned_cols=237  Identities=25%  Similarity=0.354  Sum_probs=161.5

Q ss_pred             CCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHh
Q 037006          170 DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALR  249 (541)
Q Consensus       170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~  249 (541)
                      ...|...+..|...|+.+++..+....++-.......|.++++.|+-.|+.+++..++.+|+..|..+..+++|+.+++.
T Consensus        59 ~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVh  138 (296)
T KOG0502|consen   59 NALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVH  138 (296)
T ss_pred             HhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHH
Confidence            34566667788888888888888777666544444448888888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 037006          250 GGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQK  329 (541)
Q Consensus       250 ~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  329 (541)
                      ..+++++..+.++  .+|..|+.|.|||+||+..|++++|++||+.|++++... +...++|.+|++.|..++|++|+++
T Consensus       139 ql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lg-k~resALsLAt~ggytdiV~lLL~r  215 (296)
T KOG0502|consen  139 QLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALG-KYRESALSLATRGGYTDIVELLLTR  215 (296)
T ss_pred             HHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhh-hhhhhhHhHHhcCChHHHHHHHHhc
Confidence            8877777766554  567788888888888888888888888888888888766 6677888888888888888888877


Q ss_pred             CCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHH
Q 037006          330 GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEV  409 (541)
Q Consensus       330 g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~  409 (541)
                      +.|+|..|.+|-|||-+|++.+|.                     .+++.|++.|++++..+..|++++..|+..|+. +
T Consensus       216 ~vdVNvyDwNGgTpLlyAvrgnhv---------------------kcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~  273 (296)
T KOG0502|consen  216 EVDVNVYDWNGGTPLLYAVRGNHV---------------------KCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-I  273 (296)
T ss_pred             CCCcceeccCCCceeeeeecCChH---------------------HHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-H
Confidence            777666655555554444333332                     224444444555554444455555555444444 4


Q ss_pred             HHHHHHcCCCCCCCCCCCChHH
Q 037006          410 VRMLIDKGIDVDAKDEDGYTAL  431 (541)
Q Consensus       410 v~~Ll~~g~d~~~~d~~g~tpL  431 (541)
                      |+..+++-++.+.+|+.-+||+
T Consensus       274 Vqqvie~h~lkl~Q~~~~~~~~  295 (296)
T KOG0502|consen  274 VQQVIEKHALKLCQDSEKRTPL  295 (296)
T ss_pred             HHHHHHHHHHHHhhcccCCCCC
Confidence            4444444444444444444443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.95  E-value=4.1e-27  Score=235.34  Aligned_cols=223  Identities=27%  Similarity=0.398  Sum_probs=140.6

Q ss_pred             CCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHH
Q 037006          234 ERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHI  313 (541)
Q Consensus       234 ~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~  313 (541)
                      +..|.+|.|+||.|+.+|+.+++++|++..+-++..|..|.+|||+|+..|+.++++.++.++..+|... ..|.||||.
T Consensus        43 n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~-~e~~tplhl  121 (854)
T KOG0507|consen   43 NLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVN-IENETPLHL  121 (854)
T ss_pred             cccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCccc-ccCcCccch
Confidence            3444455555555555555555555555554444445555555555555555555555555554444444 445555555


Q ss_pred             HHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCC
Q 037006          314 TASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLH  393 (541)
Q Consensus       314 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~  393 (541)
                      |++.|+.+++.+|+++|+++-..+..+.|++..|++.|..++++.+... .+.          +.++...|  -..++..
T Consensus       122 aaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~-~~~----------~~~~~~~~--~~~~~~~  188 (854)
T KOG0507|consen  122 AAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK-KFP----------VQSSLRVG--DIKRPFP  188 (854)
T ss_pred             hhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh-ccc----------hhhcccCC--CCCCCCC
Confidence            5555555555555555555555555555555555555555544443222 111          11122223  2335677


Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcC
Q 037006          394 GWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH  471 (541)
Q Consensus       394 g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  471 (541)
                      +.+|||.|+++|+.++++.|++.|.|+|.....| |+||-|+.+|..++|.+|++.|.+.+.+|.+|+|+|++-....
T Consensus       189 ~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~  265 (854)
T KOG0507|consen  189 AIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQ  265 (854)
T ss_pred             CcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcc
Confidence            8899999999999999999999999999887764 8999999999999999999999999999999999999876553

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=1.4e-27  Score=204.58  Aligned_cols=217  Identities=25%  Similarity=0.329  Sum_probs=146.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCC
Q 037006          207 CSTPLEAAAAAGEALIVELLLARKAS-TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRR  285 (541)
Q Consensus       207 ~~t~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~  285 (541)
                      |..-+-.+...|+.+++..+..-.++ +...+..||++++.++-.++.+.+..++.+|...|..+-.+++|+.+++...+
T Consensus        62 ge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~  141 (296)
T KOG0502|consen   62 GESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLH  141 (296)
T ss_pred             CCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHH
Confidence            34444557777777777766655443 34455668888888888888888888888888888777778888888887777


Q ss_pred             HHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCch
Q 037006          286 RDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSL  365 (541)
Q Consensus       286 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l  365 (541)
                      .+.+..+.+.  .+|..+ ..|.|||.+|+..|+.++|++|++.|++++...+                           
T Consensus       142 L~~~~~~~~n--~VN~~D-e~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk---------------------------  191 (296)
T KOG0502|consen  142 LDVVDLLVNN--KVNACD-EFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGK---------------------------  191 (296)
T ss_pred             HHHHHHHhhc--cccCcc-ccCchHhHHHHhcCchHHHHHHHHcCCChhhhhh---------------------------
Confidence            7776666554  333344 5677777777777777777777777776654433                           


Q ss_pred             HHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHH
Q 037006          366 CVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTEL  445 (541)
Q Consensus       366 ~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~  445 (541)
                                                 ...|+|++|+..|..++|++|+.++.|+|..|.+|-|||-||++.+|.+|++.
T Consensus       192 ---------------------------~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~  244 (296)
T KOG0502|consen  192 ---------------------------YRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVES  244 (296)
T ss_pred             ---------------------------hhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHH
Confidence                                       33466666666666666666666666666666666666666666666666666


Q ss_pred             HHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHh
Q 037006          446 LVKKGADVEARTSKNVSPMQIAECLHYAGISRILMH  481 (541)
Q Consensus       446 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~  481 (541)
                      |+..||+++..+..|.++++.|+..|+. +|+..++
T Consensus       245 Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie  279 (296)
T KOG0502|consen  245 LLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIE  279 (296)
T ss_pred             HHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHH
Confidence            6666666666666666666666666666 4444444

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.94  E-value=4.8e-26  Score=249.43  Aligned_cols=170  Identities=21%  Similarity=0.166  Sum_probs=119.4

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHCCCCCCccC-------------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 037006          271 KDGNTALHLAVEDRRRDCARLLLANGARPDIRN-------------ARDGDTPLHITASLGYEQMVKLLLQKGANKYIRN  337 (541)
Q Consensus       271 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  337 (541)
                      ..|.||||+|+..|+.++|++|+++|++++...             ...|.||||.|+..|+.+++++|++.|+|++..|
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d  205 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD  205 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh
Confidence            345666666666666666666666666665332             1358999999999999999999999999999999


Q ss_pred             cCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCC---C----CCCCCCCChHHHHHHhcCCHHHH
Q 037006          338 KSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAA---I----NGKDLHGWTALHRASFKGKIEVV  410 (541)
Q Consensus       338 ~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~---~----~~~d~~g~t~L~~Aa~~g~~~~v  410 (541)
                      ..|+||+|+|+..+......         ..   ....+.+++++.++.   .    +..|.+|.||||+|+..|+.+++
T Consensus       206 ~~g~T~Lh~A~~~~~~~~~~---------~~---l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~  273 (743)
T TIGR00870       206 SLGNTLLHLLVMENEFKAEY---------EE---LSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLF  273 (743)
T ss_pred             hhhhHHHHHHHhhhhhhHHH---------HH---HHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHH
Confidence            99999999999876322100         00   011234445544443   3    55688999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCChHHHHHHHc--------CCHHHHHHHHHCCCC
Q 037006          411 RMLIDKGIDVDAKDEDGYTALHCAVES--------GHTDVTELLVKKGAD  452 (541)
Q Consensus       411 ~~Ll~~g~d~~~~d~~g~tpL~~A~~~--------g~~~~v~~Ll~~ga~  452 (541)
                      ++|++.+++........+.|.+.+...        ....++++++..++.
T Consensus       274 ~lLL~~~~~~kk~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  323 (743)
T TIGR00870       274 RLKLAIKYKQKKFVAWPNGQQLLSLYWLEELDGWRRKQSVLELIVVFVIG  323 (743)
T ss_pred             HHHHHHHHhcceeeccCcchHhHhhhccccCCcccccccHHHHHHHHHHh
Confidence            999998776666566677777776543        122556666666543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=2.8e-25  Score=244.57  Aligned_cols=177  Identities=30%  Similarity=0.445  Sum_probs=118.5

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCC
Q 037006          273 GNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH  352 (541)
Q Consensus       273 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~  352 (541)
                      +.++|+.|+..|+.++++.|++.|++++..+ ..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~  603 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPDIGD-SKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKH  603 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCC
Confidence            3444555555555555555555555554444 445555555555555555555555555555555555555555544444


Q ss_pred             HHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHH
Q 037006          353 SRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALH  432 (541)
Q Consensus       353 ~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~  432 (541)
                      .++                     +++|++.++..+  ...|.++||.|+.+|+.+++++|+++|+|+|.+|..|+||||
T Consensus       604 ~~i---------------------v~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh  660 (823)
T PLN03192        604 HKI---------------------FRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQ  660 (823)
T ss_pred             HHH---------------------HHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            433                     222333333222  235678999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCcccCCCC-CCHHHHHHHcCcH
Q 037006          433 CAVESGHTDVTELLVKKGADVEARTSKN-VSPMQIAECLHYA  473 (541)
Q Consensus       433 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g-~t~l~~A~~~~~~  473 (541)
                      +|+..|+.+++++|+++||+++..|..| .||++++......
T Consensus       661 ~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~~~  702 (823)
T PLN03192        661 VAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQKR  702 (823)
T ss_pred             HHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHHHh
Confidence            9999999999999999999999999888 8999888655433

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.94  E-value=3.2e-26  Score=228.99  Aligned_cols=260  Identities=31%  Similarity=0.380  Sum_probs=205.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCC---------CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCc
Q 037006          139 VLVLLVKDGEMDDLREVLERSDPA---------WNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCST  209 (541)
Q Consensus       139 ~l~~a~~~g~~~~v~~ll~~~~~~---------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t  209 (541)
                      =+..|++.|+.+.+..+|+.....         ....+..|.+|+|+||.||.+|+.+++++|+++.+-++..+.. |.+
T Consensus         6 el~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~k-g~~   84 (854)
T KOG0507|consen    6 ELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTK-GIL   84 (854)
T ss_pred             hHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhcc-Ccc
Confidence            467899999999999999864332         1336777888999999999999999999999998888777744 889


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHH
Q 037006          210 PLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCA  289 (541)
Q Consensus       210 ~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v  289 (541)
                      |||+|+..|+.+++++|+.++..+|.....|.||||.|+..||.+++.+|+.+|++.-.++..+.|+|..|++.|..+++
T Consensus        85 plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vv  164 (854)
T KOG0507|consen   85 PLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVV  164 (854)
T ss_pred             eEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHH
Confidence            99999999999999999998888888888899999999999999999999999998888888889999999999999999


Q ss_pred             HHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHH
Q 037006          290 RLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAA  369 (541)
Q Consensus       290 ~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~  369 (541)
                      +.|++...+...                        +.-.|  -..++..+.+|+|.|+++||.++              
T Consensus       165 q~ll~~~~~~~~------------------------~~~~~--~~~~~~~~~~plHlaakngh~~~--------------  204 (854)
T KOG0507|consen  165 QMLLQKKFPVQS------------------------SLRVG--DIKRPFPAIYPLHLAAKNGHVEC--------------  204 (854)
T ss_pred             HHHhhhccchhh------------------------cccCC--CCCCCCCCcCCcchhhhcchHHH--------------
Confidence            988876211100                        11223  23456667778777777666544              


Q ss_pred             hhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHc---CCHHHHHHH
Q 037006          370 RKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVES---GHTDVTELL  446 (541)
Q Consensus       370 ~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~---g~~~~v~~L  446 (541)
                             ++.|++.|.++|.....| |+||.|+.+|..++|.+|++.|++.+.+|.+|+|+|.+-...   ...+++-++
T Consensus       205 -------~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~  276 (854)
T KOG0507|consen  205 -------MQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRYEIAGAV  276 (854)
T ss_pred             -------HHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhhhhhhhh
Confidence                   677888888888776655 889999999999999999999999999999999988876543   234444444


Q ss_pred             H
Q 037006          447 V  447 (541)
Q Consensus       447 l  447 (541)
                      .
T Consensus       277 ~  277 (854)
T KOG0507|consen  277 K  277 (854)
T ss_pred             h
Confidence            3

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.94  E-value=9.1e-26  Score=247.28  Aligned_cols=251  Identities=19%  Similarity=0.118  Sum_probs=164.1

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhc--CCCCcccCCCCCCcHHH-HHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHH
Q 037006          172 QGQTLLHIAIAQRRPDIVQLLLEF--GPDVESQGRCGCSTPLE-AAAAAGEALIVELLLARKASTERSETSTWGPIHLAL  248 (541)
Q Consensus       172 ~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~~~t~L~-~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa  248 (541)
                      .+..+++.||..|+.+.|+.+++.  +.+++..+.. |.|||| .|+.+++.+++++|+++|+    .+..|.||||.|+
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~-G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~   90 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRL-GRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAIS   90 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCcc-chhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHH
Confidence            455666677777777777766666  5555555544 666666 5666666666666666654    3445566666555


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 037006          249 RGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQ  328 (541)
Q Consensus       249 ~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  328 (541)
                      . ++.+.++.++....+....   +..+              .+.   .+........|.||||+|+..|+.+++++|++
T Consensus        91 ~-~~~~~v~~ll~~l~~~~~~---~~~~--------------~~~---~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~  149 (743)
T TIGR00870        91 L-EYVDAVEAILLHLLAAFRK---SGPL--------------ELA---NDQYTSEFTPGITALHLAAHRQNYEIVKLLLE  149 (743)
T ss_pred             h-ccHHHHHHHHHHHhhcccc---cCch--------------hhh---ccccccccCCCCcHHHHHHHhCCHHHHHHHHh
Confidence            4 2222222222221111100   0000              000   01111122469999999999999999999999


Q ss_pred             cCCCcccccc--------------CCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCC
Q 037006          329 KGANKYIRNK--------------SGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHG  394 (541)
Q Consensus       329 ~g~~~~~~~~--------------~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g  394 (541)
                      +|++++..+.              .|.||||.|+..                     |+.+++++|+++|++++.+|..|
T Consensus       150 ~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~---------------------~~~~iv~lLl~~gadin~~d~~g  208 (743)
T TIGR00870       150 RGASVPARACGDFFVKSQGVDSFYHGESPLNAAACL---------------------GSPSIVALLSEDPADILTADSLG  208 (743)
T ss_pred             CCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHh---------------------CCHHHHHHHhcCCcchhhHhhhh
Confidence            9999986532              466666666554                     55566888999999999999999


Q ss_pred             ChHHHHHHhcC---------CHHHHHHHHHcCCCC-------CCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCC
Q 037006          395 WTALHRASFKG---------KIEVVRMLIDKGIDV-------DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTS  458 (541)
Q Consensus       395 ~t~L~~Aa~~g---------~~~~v~~Ll~~g~d~-------~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~  458 (541)
                      +||||+|+..+         ...+.+++++.+++.       +..|.+|.||||+|+..|+.+++++|++.+.+......
T Consensus       209 ~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk~~a  288 (743)
T TIGR00870       209 NTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVA  288 (743)
T ss_pred             hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcceeec
Confidence            99999999987         234556666665443       67799999999999999999999999996655444444


Q ss_pred             CCCCHHHHHHH
Q 037006          459 KNVSPMQIAEC  469 (541)
Q Consensus       459 ~g~t~l~~A~~  469 (541)
                      ....+.+.+..
T Consensus       289 ~~~~~~~~~~~  299 (743)
T TIGR00870       289 WPNGQQLLSLY  299 (743)
T ss_pred             cCcchHhHhhh
Confidence            45555555544

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=1.9e-25  Score=216.38  Aligned_cols=229  Identities=31%  Similarity=0.447  Sum_probs=158.9

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHH
Q 037006          211 LEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCAR  290 (541)
Q Consensus       211 L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~  290 (541)
                      +..|+..|.++=++.|+..|++++..+.+|.|+||.++...+.++|++|+++|++||..|..|+||||.|+..|+..+++
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~  123 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVE  123 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHH
Confidence            44456666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHH
Q 037006          291 LLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQ-KGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAA  369 (541)
Q Consensus       291 ~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~  369 (541)
                      +|+++|++....+ .+|..|+..|..--..+++..-.. .|+++           ..+-..-...               
T Consensus       124 ~li~~gA~~~avN-sdg~~P~dl~e~ea~~~~l~~~~~r~gi~i-----------ea~R~~~e~~---------------  176 (527)
T KOG0505|consen  124 YLIQHGANLLAVN-SDGNMPYDLAEDEATLDVLETEMARQGIDI-----------EAARKAEEQT---------------  176 (527)
T ss_pred             HHHHhhhhhhhcc-CCCCCccccccCcchhHHHHHHHHHhcccH-----------HHHhhhhHHH---------------
Confidence            6666666665555 455555555443333333332221 12211           1110000000               


Q ss_pred             hhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHC
Q 037006          370 RKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKK  449 (541)
Q Consensus       370 ~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  449 (541)
                         .+.=+...+..|...+..+..|.|+||.|+.+|..++.++|++.|.+++.+|.+|+||||.|+..|+.+++++|+++
T Consensus       177 ---ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~  253 (527)
T KOG0505|consen  177 ---MLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEH  253 (527)
T ss_pred             ---HHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHh
Confidence               11123334558999998888899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCCCCCHHHHHHH
Q 037006          450 GADVEARTSKNVSPMQIAEC  469 (541)
Q Consensus       450 ga~~~~~~~~g~t~l~~A~~  469 (541)
                      |++++..+..|.||+++|..
T Consensus       254 ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  254 GADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             hcccchhhhcCCCCccchhh
Confidence            99999999999999999865

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=1.4e-23  Score=231.07  Aligned_cols=177  Identities=19%  Similarity=0.212  Sum_probs=163.9

Q ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHH
Q 037006          169 ADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLAL  248 (541)
Q Consensus       169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa  248 (541)
                      .+..+.++||.||..|+.++++.|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~-G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~  599 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSK-GRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAI  599 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence            3445779999999999999999999999999998887 999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 037006          249 RGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQ  328 (541)
Q Consensus       249 ~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  328 (541)
                      ..|+.+++++|++.++..+.  ..+.++||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++
T Consensus       600 ~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d-~~G~TpLh~A~~~g~~~iv~~Ll~  676 (823)
T PLN03192        600 SAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSED-HQGATALQVAMAEDHVDMVRLLIM  676 (823)
T ss_pred             HhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHCCcHHHHHHHHH
Confidence            99999999999988766543  457799999999999999999999999999887 889999999999999999999999


Q ss_pred             cCCCccccccCC-CchhHHHHH
Q 037006          329 KGANKYIRNKSG-KTAYDVAAE  349 (541)
Q Consensus       329 ~g~~~~~~~~~g-~t~l~~A~~  349 (541)
                      +|++++..+..| .+|...+..
T Consensus       677 ~GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        677 NGADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             cCCCCCCCCCCCCCCHHHHHHH
Confidence            999999999888 888877643

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=2.3e-24  Score=198.36  Aligned_cols=165  Identities=30%  Similarity=0.465  Sum_probs=141.7

Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHH
Q 037006          300 DIRNARDGDTPLHITASLGYEQMVKLLLQKG-ANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQ  378 (541)
Q Consensus       300 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~  378 (541)
                      |+.+ .+|+|+||||+..+++++|+.|++.| ++++..++.|.||+++++...                --...+.+++.
T Consensus       262 NlaD-sNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~----------------lk~~~d~~vV~  324 (452)
T KOG0514|consen  262 NLAD-SNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAK----------------LKQPADRTVVE  324 (452)
T ss_pred             hhhc-CCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHh----------------hcchhhHHHHH
Confidence            4444 67899999999999999999999887 688889999999998886421                11223456677


Q ss_pred             HHHHcCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCccc
Q 037006          379 RLIEAGAAINGKD-LHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKK-GADVEAR  456 (541)
Q Consensus       379 ~Ll~~g~~~~~~d-~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~  456 (541)
                      .|...| ++|.+- +.|+|+||+|+.+|+.++|+.||..|+|+|.+|.+|-|+|++|+++||.||+++||.. ++|+...
T Consensus       325 ~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLt  403 (452)
T KOG0514|consen  325 RLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLT  403 (452)
T ss_pred             HHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceee
Confidence            777665 677664 8899999999999999999999999999999999999999999999999999999987 7899999


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhC
Q 037006          457 TSKNVSPMQIAECLHYAGISRILMHG  482 (541)
Q Consensus       457 ~~~g~t~l~~A~~~~~~~i~~~Ll~~  482 (541)
                      |.+|-|+|.+|...|+.+|.-+|-.+
T Consensus       404 D~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  404 DVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             cCCCchhhhhHHhcCchHHHHHHHHH
Confidence            99999999999999999999888743

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=4.3e-24  Score=207.02  Aligned_cols=227  Identities=29%  Similarity=0.406  Sum_probs=133.5

Q ss_pred             HHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHH
Q 037006          180 AIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLL  259 (541)
Q Consensus       180 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~L  259 (541)
                      ||..|..+=|+.|+..|++++..+.. |.|+||.+|...+.+||++|+++|++++..|..+|||||.|+..|+.+++++|
T Consensus        47 A~~~~d~~ev~~ll~~ga~~~~~n~D-glTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~l  125 (527)
T KOG0505|consen   47 ACSRGDLEEVRKLLNRGASPNLCNVD-GLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYL  125 (527)
T ss_pred             ccccccHHHHHHHhccCCCccccCCc-cchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHH
Confidence            33334444444444444444444333 45555555555555555555555555555555555555555555555555666


Q ss_pred             HHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHH-CCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 037006          260 LIKGANVNALTKDGNTALHLAVEDRRRDCARLLLA-NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNK  338 (541)
Q Consensus       260 l~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~  338 (541)
                      +.+|+++...+.+|..|+..+...-..+++..-.. .|.+++......-.+-         .+=+...+..|...++.+.
T Consensus       126 i~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~m---------l~D~~q~l~~G~~~d~~~~  196 (527)
T KOG0505|consen  126 IQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTM---------LDDARQWLNAGAELDARHA  196 (527)
T ss_pred             HHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHH---------HHHHHHHHhcccccccccc
Confidence            55555555555555555555544433333333332 1222111110000111         1112233346777777776


Q ss_pred             CCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCC
Q 037006          339 SGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGI  418 (541)
Q Consensus       339 ~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~  418 (541)
                      .|.|.+|.|+.+|..+.                     +++|+++|.+++.+|.+||||||.|+.-|..++.++|+++|+
T Consensus       197 rG~T~lHvAaa~Gy~e~---------------------~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga  255 (527)
T KOG0505|consen  197 RGATALHVAAANGYTEV---------------------AALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGA  255 (527)
T ss_pred             ccchHHHHHHhhhHHHH---------------------HHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhc
Confidence            67777777766655543                     666788888888888899999999999999999999999999


Q ss_pred             CCCCCCCCCChHHHHHHHc
Q 037006          419 DVDAKDEDGYTALHCAVES  437 (541)
Q Consensus       419 d~~~~d~~g~tpL~~A~~~  437 (541)
                      +++.....|.||+.+|..-
T Consensus       256 ~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  256 DMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             ccchhhhcCCCCccchhhh
Confidence            9999999999999887653

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=4.6e-23  Score=182.28  Aligned_cols=148  Identities=18%  Similarity=0.265  Sum_probs=131.5

Q ss_pred             cCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHH
Q 037006          329 KGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIE  408 (541)
Q Consensus       329 ~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~  408 (541)
                      +|++++..+..+.+++|.|++.|+.+.+.                 +++++|.+.|..++.+|..|+||||+|+..|+.+
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~-----------------~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~   71 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELM-----------------EVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRAN   71 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHH-----------------HHHHHHhhcchhhhccCCCCCcHHHHHHHhCccC
Confidence            46677778888899999999888876543                 3477888999999999999999999999998865


Q ss_pred             H---HHHHHHcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHH-CCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCC
Q 037006          409 V---VRMLIDKGIDVDAKD-EDGYTALHCAVESGHTDVTELLVK-KGADVEARTSKNVSPMQIAECLHYAGISRILMHGG  483 (541)
Q Consensus       409 ~---v~~Ll~~g~d~~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~g  483 (541)
                      .   +++|+++|+++|.+| ..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++.+++++|+++|
T Consensus        72 ~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g  151 (166)
T PHA02743         72 AVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANG  151 (166)
T ss_pred             HHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4   899999999999998 589999999999999999999995 79999999999999999999999999999999999


Q ss_pred             CCCCCCcccc
Q 037006          484 ATKDGIQQTN  493 (541)
Q Consensus       484 a~~~~~~~~~  493 (541)
                      ++.+.....+
T Consensus       152 a~~~~~~~~~  161 (166)
T PHA02743        152 AVCDDPLSIG  161 (166)
T ss_pred             CCCCCcccCC
Confidence            9987665544

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=1.1e-22  Score=179.88  Aligned_cols=148  Identities=20%  Similarity=0.207  Sum_probs=124.2

Q ss_pred             CCCCCccCCCCCCcHHHHHHHcCCH----HHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhh
Q 037006          296 GARPDIRNARDGDTPLHITASLGYE----QMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARK  371 (541)
Q Consensus       296 g~~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~  371 (541)
                      |++++..+ ..+.++||.|++.|+.    +++++|.+.|++++..|..|+||||+|+..|+.+.+               
T Consensus        10 ~~~~~~~~-~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~---------------   73 (166)
T PHA02743         10 NLGAVEID-EDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAV---------------   73 (166)
T ss_pred             chHHhhhc-cCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHH---------------
Confidence            34444444 4566778888888876    566677778888888888888888888887776542               


Q ss_pred             CCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHC
Q 037006          372 GEVRTMQRLIEAGAAINGKD-LHGWTALHRASFKGKIEVVRMLID-KGIDVDAKDEDGYTALHCAVESGHTDVTELLVKK  449 (541)
Q Consensus       372 ~~~~~~~~Ll~~g~~~~~~d-~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  449 (541)
                         .++++|+++|+++|.++ ..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++
T Consensus        74 ---~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~  150 (166)
T PHA02743         74 ---MKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRAN  150 (166)
T ss_pred             ---HHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence               34788999999999998 589999999999999999999995 7999999999999999999999999999999999


Q ss_pred             CCCCcccCCCCCC
Q 037006          450 GADVEARTSKNVS  462 (541)
Q Consensus       450 ga~~~~~~~~g~t  462 (541)
                      |++++.++..|.+
T Consensus       151 ga~~~~~~~~~~~  163 (166)
T PHA02743        151 GAVCDDPLSIGLS  163 (166)
T ss_pred             CCCCCCcccCCcc
Confidence            9999999988753

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=9.3e-23  Score=187.84  Aligned_cols=161  Identities=32%  Similarity=0.459  Sum_probs=134.0

Q ss_pred             CCCCCCCCccHHHHHHHcCCHHHHHHHHhcC-CCCcccCCCCCCcHHHHHHHc-----CCHHHHHHHHHCCCCCCC-CCC
Q 037006          166 ADSADAQGQTLLHIAIAQRRPDIVQLLLEFG-PDVESQGRCGCSTPLEAAAAA-----GEALIVELLLARKASTER-SET  238 (541)
Q Consensus       166 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~t~L~~A~~~-----g~~~iv~~Ll~~g~~~~~-~~~  238 (541)
                      +|..|.+|+|+||||+.++++++|+.||+.| ++++.++.. |+||+++|+..     .+.++|.-|...|- +|. ...
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrA-GYtpiMLaALA~lk~~~d~~vV~~LF~mgn-VNaKAsQ  338 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRA-GYTPVMLAALAKLKQPADRTVVERLFKMGD-VNAKASQ  338 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccc-cccHHHHHHHHhhcchhhHHHHHHHHhccC-cchhhhh
Confidence            6788999999999999999999999999988 578888887 89999988754     36778888887663 443 345


Q ss_pred             CCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHC-CCCCCccCCCCCCcHHHHHHHc
Q 037006          239 STWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLAN-GARPDIRNARDGDTPLHITASL  317 (541)
Q Consensus       239 ~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~  317 (541)
                      .|+|+|++|+.+|+.++|+.||.-|+|+|..|.+|.|+|+.|++.||.+++++||.. +.+....+ .+|.|+|.+|...
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD-~DgSTAl~IAlea  417 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTD-VDGSTALSIALEA  417 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeec-CCCchhhhhHHhc
Confidence            788999999999999999999999999999999999999999999999999999876 45555444 7899999999999


Q ss_pred             CCHHHHHHHHHc
Q 037006          318 GYEQMVKLLLQK  329 (541)
Q Consensus       318 g~~~~v~~Ll~~  329 (541)
                      |+.+|.-+|..+
T Consensus       418 gh~eIa~mlYa~  429 (452)
T KOG0514|consen  418 GHREIAVMLYAH  429 (452)
T ss_pred             CchHHHHHHHHH
Confidence            999988888753

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=7.8e-22  Score=175.29  Aligned_cols=137  Identities=28%  Similarity=0.358  Sum_probs=119.3

Q ss_pred             cccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHH--HHcCCCCCCCCCCCChHHHHHHhcCC----H
Q 037006          334 YIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRL--IEAGAAINGKDLHGWTALHRASFKGK----I  407 (541)
Q Consensus       334 ~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~L--l~~g~~~~~~d~~g~t~L~~Aa~~g~----~  407 (541)
                      +..+..|.|+||+|+..|+.++++.+                 +.++  ...|++++.+|..|+||||+|+..|+    .
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l-----------------~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~   77 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARF-----------------TPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAA   77 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHH-----------------HHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHH
Confidence            34677899999999888888776543                 1111  13468899999999999999999998    5


Q ss_pred             HHHHHHHHcCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHH-CCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q 037006          408 EVVRMLIDKGIDVDAKDE-DGYTALHCAVESGHTDVTELLVK-KGADVEARTSKNVSPMQIAECLHYAGISRILMHGGAT  485 (541)
Q Consensus       408 ~~v~~Ll~~g~d~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~  485 (541)
                      +++++|++.|+++|.++. .|+||||+|+..++.+++++|++ .|++++.+|..|+|||++|...++.+++++|++.++.
T Consensus        78 ~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         78 EIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             HHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            899999999999999985 99999999999999999999998 5999999999999999999999999999999998876


Q ss_pred             CC
Q 037006          486 KD  487 (541)
Q Consensus       486 ~~  487 (541)
                      ..
T Consensus       158 ~~  159 (169)
T PHA02741        158 SR  159 (169)
T ss_pred             hc
Confidence            43

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1.2e-20  Score=179.53  Aligned_cols=155  Identities=23%  Similarity=0.239  Sum_probs=132.7

Q ss_pred             CCCCCCcc-HHHHHHHcCCHHHHHHHHhcCCCCcccC---CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCch
Q 037006          168 SADAQGQT-LLHIAIAQRRPDIVQLLLEFGPDVESQG---RCGCSTPLEAAAAAGEALIVELLLARKASTERS-ETSTWG  242 (541)
Q Consensus       168 ~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~---~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~-~~~~~t  242 (541)
                      .+|..|+| +||.|+..|+.+++++|+++|++++.++   ...|.||||+|+..|+.+++++|+++|++++.. +..|.|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            35556654 6677778899999999999999999874   234999999999999999999999999999985 467999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHH
Q 037006          243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQM  322 (541)
Q Consensus       243 ~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~  322 (541)
                      |||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++..+...  ..    +..+.+|++++   ++.++
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~---~n~ei  177 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN--EI----SNFYKHPKKIL---INFDI  177 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC--cc----cccccChhhhh---ccHHH
Confidence            99999999999999999999999999999999999999999999888666533  22    14567888865   47899


Q ss_pred             HHHHHHcCC
Q 037006          323 VKLLLQKGA  331 (541)
Q Consensus       323 v~~Ll~~g~  331 (541)
                      +++|+.+++
T Consensus       178 ~~~Lish~v  186 (300)
T PHA02884        178 LKILVSHFI  186 (300)
T ss_pred             HHHHHHHHH
Confidence            999999876

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.85  E-value=2.2e-20  Score=177.71  Aligned_cols=100  Identities=19%  Similarity=0.218  Sum_probs=56.6

Q ss_pred             HHHHHHcCCCCCCC-CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcc
Q 037006          377 MQRLIEAGAAINGK-DLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEA  455 (541)
Q Consensus       377 ~~~Ll~~g~~~~~~-d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~  455 (541)
                      +++|+++|+++|.. +..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++.++.  |..   
T Consensus        86 vklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---  160 (300)
T PHA02884         86 AKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---  160 (300)
T ss_pred             HHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---
Confidence            34444445555543 234666666666666666666666666666666666666666666666666554443  222   


Q ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhCCC
Q 037006          456 RTSKNVSPMQIAECLHYAGISRILMHGGA  484 (541)
Q Consensus       456 ~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga  484 (541)
                      .+..+.+|++++   ++.+++++|++++.
T Consensus       161 ~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        161 ISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             ccccccChhhhh---ccHHHHHHHHHHHH
Confidence            244445555554   34566666666655

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=2.1e-20  Score=166.16  Aligned_cols=131  Identities=18%  Similarity=0.221  Sum_probs=99.8

Q ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHHh------cCCCCcccCCCCCCcHHHHHHHcCC----HHHHHHHHHCCCCCCCCC
Q 037006          168 SADAQGQTLLHIAIAQRRPDIVQLLLE------FGPDVESQGRCGCSTPLEAAAAAGE----ALIVELLLARKASTERSE  237 (541)
Q Consensus       168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~~~~t~L~~A~~~g~----~~iv~~Ll~~g~~~~~~~  237 (541)
                      .+|..|.||||+|+..|+.++|+.|+.      .|++++.++.. |.||||+|+..|+    .+++++|++.|++++..+
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~-g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDA-GQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCC-CCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            356788899999999999999988854      24667766665 7788888888777    477778888787777776


Q ss_pred             C-CCchHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCC
Q 037006          238 T-STWGPIHLALRGGHLEVLKLLLI-KGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARP  299 (541)
Q Consensus       238 ~-~~~t~L~~Aa~~g~~~iv~~Ll~-~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  299 (541)
                      . .|+||||+|+..++.+++++|+. .|++++..|.+|+|||++|+..++.+++++|++.++..
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            4 77788888888888888887776 47777777777778888877777777777777765543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=7.7e-21  Score=166.56  Aligned_cols=138  Identities=22%  Similarity=0.255  Sum_probs=111.8

Q ss_pred             ccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHH-HcCCCCCCCCCCCChHHHHHHhcCCH---H
Q 037006          333 KYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLI-EAGAAINGKDLHGWTALHRASFKGKI---E  408 (541)
Q Consensus       333 ~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll-~~g~~~~~~d~~g~t~L~~Aa~~g~~---~  408 (541)
                      .+..|..|.||||+|+..|+...  .+..               ...+. ..+..++..|..|+||||+|+..|+.   +
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~~--l~~~---------------~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e   72 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVTD--LLAF---------------KNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQE   72 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHHH--HHHH---------------HHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHH
Confidence            34567889999999999987321  1100               00000 00111234588999999999999987   4


Q ss_pred             HHHHHHHcCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHC-CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCC
Q 037006          409 VVRMLIDKGIDVDAKDE-DGYTALHCAVESGHTDVTELLVKK-GADVEARTSKNVSPMQIAECLHYAGISRILMHGGATK  486 (541)
Q Consensus       409 ~v~~Ll~~g~d~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~  486 (541)
                      ++++|++.|++++.+|. .|+||||+|+..|+.+++++|+++ |++++.+|..|+|||++|+..|+.+++++|+++|++.
T Consensus        73 ~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         73 KLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             HHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            68999999999999985 999999999999999999999985 9999999999999999999999999999999999876


Q ss_pred             C
Q 037006          487 D  487 (541)
Q Consensus       487 ~  487 (541)
                      +
T Consensus       153 ~  153 (154)
T PHA02736        153 K  153 (154)
T ss_pred             C
Confidence            4

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=1.9e-20  Score=164.05  Aligned_cols=130  Identities=26%  Similarity=0.339  Sum_probs=106.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCC-------CccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHH
Q 037006          305 RDGDTPLHITASLGYEQMVKLLLQKGA-------NKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTM  377 (541)
Q Consensus       305 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~-------~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~  377 (541)
                      ..|.||||+|+..|+.  +.++...+.       .++..|..|+||||+|+..|+.+..                  +++
T Consensus        15 ~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~------------------e~v   74 (154)
T PHA02736         15 IEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQ------------------EKL   74 (154)
T ss_pred             CCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHH------------------HHH
Confidence            4566777777776662  222222211       1234688999999999988876542                  457


Q ss_pred             HHHHHcCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCc
Q 037006          378 QRLIEAGAAINGKD-LHGWTALHRASFKGKIEVVRMLIDK-GIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVE  454 (541)
Q Consensus       378 ~~Ll~~g~~~~~~d-~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~  454 (541)
                      ++|+++|++++.++ ..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus        75 ~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         75 KLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            88999999999998 5999999999999999999999985 99999999999999999999999999999999999875

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=3.1e-19  Score=147.83  Aligned_cols=142  Identities=32%  Similarity=0.412  Sum_probs=115.5

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHH
Q 037006          211 LEAAAAAGEALIVELLLARKAS-TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCA  289 (541)
Q Consensus       211 L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v  289 (541)
                      +.+|+..+.+..|+.|++..++ +|.+|.+++||||.|+++||.+|++.|+..|++++++...|+||||-||..++.+++
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va  146 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVA  146 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHH
Confidence            4456666666666666665554 788888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCccCCCCCCcHHHHHHHcCC-HHHHHHHHH-cCCCccccccCCCchhHHHHHcCCH
Q 037006          290 RLLLANGARPDIRNARDGDTPLHITASLGY-EQMVKLLLQ-KGANKYIRNKSGKTAYDVAAECGHS  353 (541)
Q Consensus       290 ~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~g~~  353 (541)
                      -+||++|+|++... ....||||+|+...+ ...+.+|+. .++++-..+..+.||+.+|-+.+..
T Consensus       147 ~~LLqhgaDVnA~t-~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  147 GRLLQHGADVNAQT-KGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMS  211 (228)
T ss_pred             HHHHhccCcccccc-cccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhh
Confidence            99999999999887 678899999987655 455666654 5778888888899999988776543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.80  E-value=1.6e-18  Score=143.58  Aligned_cols=142  Identities=23%  Similarity=0.263  Sum_probs=103.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC
Q 037006          139 VLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAG  218 (541)
Q Consensus       139 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g  218 (541)
                      .+.+|+..+....|+.||+...   +.++.+|.+|+||||-|+.+|+.+||+.|+.+|++++.+... |+||||.||.-+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~a---n~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~-GWTPLhSAckWn  141 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKA---NHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNE-GWTPLHSACKWN  141 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhcc---ccccccccccccHHHHHHhcCchHHHHHHHHccCCccccccc-Cccchhhhhccc
Confidence            5677888888888888887654   347788888888888888888888888888888888877776 777777777777


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCH-HHHHHHHHc-CCCCCCCCCCCChHHHHHHHhC
Q 037006          219 EALIVELLLARKASTERSETSTWGPIHLALRGGHL-EVLKLLLIK-GANVNALTKDGNTALHLAVEDR  284 (541)
Q Consensus       219 ~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~-~iv~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g  284 (541)
                      +.+++-+|+.+|++++......+||||.||...+. ..+.+|+.. ++++...+..+.||+.+|-+.+
T Consensus       142 N~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  142 NFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             chhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            77777777777777777777777777777765543 445554433 5555556666667776665543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.78  E-value=3e-18  Score=174.64  Aligned_cols=188  Identities=26%  Similarity=0.308  Sum_probs=139.8

Q ss_pred             CCCCCCCCCCChHHHHHHH---hCCHHHHHHHHHCCC----CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 037006          264 ANVNALTKDGNTALHLAVE---DRRRDCARLLLANGA----RPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIR  336 (541)
Q Consensus       264 ~~~~~~d~~g~t~L~~A~~---~g~~~~v~~Ll~~g~----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~  336 (541)
                      .+++.+...|.|.||.|..   .++.++++.|++.-.    ++-..+...|.||||+|+.+.+.++|++|++.|||++.+
T Consensus       134 w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aR  213 (782)
T KOG3676|consen  134 WKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHAR  213 (782)
T ss_pred             hccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhH
Confidence            4455556667777777765   334467777776422    122222356889999999999999999999999987654


Q ss_pred             ccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHc
Q 037006          337 NKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDK  416 (541)
Q Consensus       337 ~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~  416 (541)
                      -....-   .+-..                .+.   +         ...+-...=+.|..||-+||-.++.|++++|+++
T Consensus       214 a~G~FF---~~~dq----------------k~~---r---------k~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  214 ACGAFF---CPDDQ----------------KAS---R---------KSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             hhcccc---Ccccc----------------ccc---c---------cccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            321100   00000                000   0         0011111125688999999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCC--CcccCCCCCCHHHHHHHcCcHHHHHHHHhC
Q 037006          417 GIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGAD--VEARTSKNVSPMQIAECLHYAGISRILMHG  482 (541)
Q Consensus       417 g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~--~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~  482 (541)
                      |+|++.+|..|+|.||..+.+-..++..++|++|++  ...+|.+|.|||.+|+..|+.++.+.+++.
T Consensus       263 gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  263 GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999999999999999999999999999999999  889999999999999999999999999987

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.76  E-value=8.6e-19  Score=156.77  Aligned_cols=118  Identities=27%  Similarity=0.444  Sum_probs=104.2

Q ss_pred             HcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCC
Q 037006          382 EAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNV  461 (541)
Q Consensus       382 ~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~  461 (541)
                      +..-|.|.-|..|.+|||+||+.|+..+|+.|+..|+.+|..+.-..||||+|+.+||-++|+.|++..+|+|+.|..|.
T Consensus        22 ~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgn  101 (448)
T KOG0195|consen   22 DTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGN  101 (448)
T ss_pred             CcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCC
Confidence            34567788888999999999999999999999999999999988888999999999999999999999999999999999


Q ss_pred             CHHHHHHHcCcHHHHHHHHhCCCCCCCCcccccchhhh
Q 037006          462 SPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSI  499 (541)
Q Consensus       462 t~l~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~  499 (541)
                      ||||||+.+|+..+.+-|+..||-.+..++.+.+++..
T Consensus       102 tplhyacfwgydqiaedli~~ga~v~icnk~g~tpldk  139 (448)
T KOG0195|consen  102 TPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDK  139 (448)
T ss_pred             CchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhh
Confidence            99999999999999999999999888888888776654

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.76  E-value=7.1e-18  Score=132.97  Aligned_cols=86  Identities=31%  Similarity=0.587  Sum_probs=42.1

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHH
Q 037006          398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISR  477 (541)
Q Consensus       398 L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~  477 (541)
                      ||+||..|+.+++++|++.+.+++.    |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            3445555555555555554444443    444555555555555555555555555555555555555555555555555


Q ss_pred             HHHhCCCCCC
Q 037006          478 ILMHGGATKD  487 (541)
Q Consensus       478 ~Ll~~ga~~~  487 (541)
                      +|+++|++++
T Consensus        77 ~Ll~~g~~~~   86 (89)
T PF12796_consen   77 LLLEHGADVN   86 (89)
T ss_dssp             HHHHTTT-TT
T ss_pred             HHHHcCCCCC
Confidence            5555554443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.76  E-value=8.7e-18  Score=132.45  Aligned_cols=89  Identities=43%  Similarity=0.743  Sum_probs=83.0

Q ss_pred             hHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHH
Q 037006          365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTE  444 (541)
Q Consensus       365 l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~  444 (541)
                      ++.|++.|+.+++++|++.+.+++.    |.||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+.+|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            5789999999999999999988886    889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCCcccC
Q 037006          445 LLVKKGADVEART  457 (541)
Q Consensus       445 ~Ll~~ga~~~~~~  457 (541)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=2.7e-18  Score=153.60  Aligned_cols=139  Identities=26%  Similarity=0.366  Sum_probs=122.5

Q ss_pred             cCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHH
Q 037006          329 KGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIE  408 (541)
Q Consensus       329 ~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~  408 (541)
                      ..-|.|.-|..|.+|||+|++.||..                     +++.|+..|+-+|..+....||||+|+.+|+.+
T Consensus        23 tehdln~gddhgfsplhwaakegh~a---------------------ivemll~rgarvn~tnmgddtplhlaaahghrd   81 (448)
T KOG0195|consen   23 TEHDLNVGDDHGFSPLHWAAKEGHVA---------------------IVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRD   81 (448)
T ss_pred             cccccccccccCcchhhhhhhcccHH---------------------HHHHHHhcccccccccCCCCcchhhhhhcccHH
Confidence            45577888999999999998777664                     478899999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCC
Q 037006          409 VVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDG  488 (541)
Q Consensus       409 ~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~~  488 (541)
                      +|+.|++..+|+|..+..|+|||||||..|...+.+-|+..||-++..|++|.|||+.|.-.-...+.+.--++|-+++.
T Consensus        82 ivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen   82 IVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             HHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999998655445555555667776553

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.73  E-value=4.3e-17  Score=166.31  Aligned_cols=191  Identities=29%  Similarity=0.395  Sum_probs=158.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCC-----CCCCCCCCCCCccHHHHHHHc---CCHHHHHHHHhcCCC----CcccCCC
Q 037006          138 PVLVLLVKDGEMDDLREVLERSDPA-----WNPADSADAQGQTLLHIAIAQ---RRPDIVQLLLEFGPD----VESQGRC  205 (541)
Q Consensus       138 ~~l~~a~~~g~~~~v~~ll~~~~~~-----~~~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~----~~~~~~~  205 (541)
                      ..+..+...+.++....++......     ...++.+...|.|+||.|..+   ++.++++.|++.-+.    +-..+..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            4566677777777777766544211     133677778899999999984   456999999987653    2333444


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC--------C---------------CCCchHHHHHHhcCCHHHHHHHHHc
Q 037006          206 GCSTPLEAAAAAGEALIVELLLARKASTERS--------E---------------TSTWGPIHLALRGGHLEVLKLLLIK  262 (541)
Q Consensus       206 ~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~--------~---------------~~~~t~L~~Aa~~g~~~iv~~Ll~~  262 (541)
                      .|.||||+|+.+.+.++|++|++.|||++.+        +               ..|..||.+||..++.|++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            6999999999999999999999999998632        1               1255699999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCC--CCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 037006          263 GANVNALTKDGNTALHLAVEDRRRDCARLLLANGAR--PDIRNARDGDTPLHITASLGYEQMVKLLLQK  329 (541)
Q Consensus       263 g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  329 (541)
                      |+|++.+|..|+|.||..+..-..++..+++++|++  ....+ ..|.|||.+|+..|..++.+.+++.
T Consensus       263 gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N-~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  263 GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRN-NQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccc-cCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999999999999999999999999999999999  65565 7899999999999999999999987

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.70  E-value=3.8e-16  Score=131.46  Aligned_cols=124  Identities=40%  Similarity=0.676  Sum_probs=114.2

Q ss_pred             cccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHH
Q 037006          336 RNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLID  415 (541)
Q Consensus       336 ~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~  415 (541)
                      .+..|.|||+.|+..++.                     +++++|++.+.+.+..+..|.||||.|+..++.+++++|++
T Consensus         3 ~~~~g~t~l~~a~~~~~~---------------------~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~   61 (126)
T cd00204           3 RDEDGRTPLHLAASNGHL---------------------EVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE   61 (126)
T ss_pred             cCcCCCCHHHHHHHcCcH---------------------HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            457788998888776665                     44788999999988899999999999999999999999999


Q ss_pred             cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHH
Q 037006          416 KGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM  480 (541)
Q Consensus       416 ~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll  480 (541)
                      .|++++..+..|.||+|+|+..++.+++++|+++|.+++..+..|.||+++|...++.+++++|+
T Consensus        62 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          62 KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999885

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.70  E-value=5.1e-16  Score=130.70  Aligned_cols=124  Identities=44%  Similarity=0.639  Sum_probs=94.3

Q ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHH
Q 037006          169 ADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLAL  248 (541)
Q Consensus       169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa  248 (541)
                      .|..|.||||+|+..|+.+++++|++.|.+.+..+.. |.+|+++|+..++.+++++|++.+++++..+..+.||+|+|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~-g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDND-GRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            3466788888888888888888888888776555554 778888888888888888888877777777777777777777


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHH
Q 037006          249 RGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLL  293 (541)
Q Consensus       249 ~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll  293 (541)
                      ..++.+++++|++++.+++..+..+.||+++|...++.+++++|+
T Consensus        82 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          82 RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            777777777777777777777777777777777777777777663

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.67  E-value=1.8e-16  Score=117.27  Aligned_cols=102  Identities=27%  Similarity=0.473  Sum_probs=92.5

Q ss_pred             hHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHH
Q 037006          365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTE  444 (541)
Q Consensus       365 l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~  444 (541)
                      +.++.++|..+-++.....|.++|.. ..|++|||+||.+|+.+++++|+..|++++.+|..|-|||-.|+..||.++|+
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVk   84 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVK   84 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHH
Confidence            55677888888899899999888854 48999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCCcccCCCCCCHHHHH
Q 037006          445 LLVKKGADVEARTSKNVSPMQIA  467 (541)
Q Consensus       445 ~Ll~~ga~~~~~~~~g~t~l~~A  467 (541)
                      +||++||+-..+..+|.+.++.+
T Consensus        85 lLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   85 LLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHcCcccceeCCCchhHHhhc
Confidence            99999999999999998877765

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.57  E-value=1.1e-14  Score=107.88  Aligned_cols=99  Identities=31%  Similarity=0.401  Sum_probs=59.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHH
Q 037006          210 PLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCA  289 (541)
Q Consensus       210 ~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v  289 (541)
                      .+.+++.+|.++-|+-.+..|.++|..- .|++|||+|+..|+.+++++|+..|++++..|++|-|||..|+..||.+||
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            3455555666665555555555554432 456666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHCCCCCCccCCCCCCcH
Q 037006          290 RLLLANGARPDIRNARDGDTP  310 (541)
Q Consensus       290 ~~Ll~~g~~~~~~~~~~g~t~  310 (541)
                      ++|++.|++-.... .+|.+.
T Consensus        84 klLL~~GAdrt~~~-PdG~~~  103 (117)
T KOG4214|consen   84 KLLLQNGADRTIHA-PDGTAL  103 (117)
T ss_pred             HHHHHcCcccceeC-CCchhH
Confidence            66666666655444 344443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.55  E-value=1.8e-13  Score=128.13  Aligned_cols=130  Identities=37%  Similarity=0.598  Sum_probs=107.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcC
Q 037006          305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG  384 (541)
Q Consensus       305 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g  384 (541)
                      ..+.++++.++..+..+++++++..|++++..+..|.||+|+|+..++.                ..++.+++++|++.|
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~----------------~~~~~~~~~~ll~~g  134 (235)
T COG0666          71 LDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNP----------------PEGNIEVAKLLLEAG  134 (235)
T ss_pred             ccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCc----------------ccchHHHHHHHHHcC
Confidence            4467788888888888888888888888888888888888888777763                334456677888888


Q ss_pred             C---CCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCC
Q 037006          385 A---AINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKG  450 (541)
Q Consensus       385 ~---~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  450 (541)
                      +   ..+.+|..|+||||+|+..|+.++++.|++.|++++..+..|.|+++.|+..++.++++.+++.+
T Consensus       135 ~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         135 ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            8   55666899999999999999999999999999999999999999999999999999999999876

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.54  E-value=4.5e-14  Score=126.78  Aligned_cols=119  Identities=27%  Similarity=0.377  Sum_probs=107.8

Q ss_pred             CchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHHcCCHH
Q 037006          363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA-KDEDGYTALHCAVESGHTD  441 (541)
Q Consensus       363 ~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~-~d~~g~tpL~~A~~~g~~~  441 (541)
                      .++..++..+..+-...|++.--.+|..|.+|.|+|..|+..|+.++|+.|++.|+|+|. ++..++||||+|+..|+.+
T Consensus        14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~d   93 (396)
T KOG1710|consen   14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQD   93 (396)
T ss_pred             hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCch
Confidence            346667777778888888888777999999999999999999999999999999999995 4568999999999999999


Q ss_pred             HHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHh
Q 037006          442 VTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMH  481 (541)
Q Consensus       442 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~  481 (541)
                      +.++|++.|+.....|+-|+|+-++|+.-|+-++|.++=.
T Consensus        94 vcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   94 VCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             HHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            9999999999999999999999999999999998877644

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.51  E-value=1.9e-13  Score=128.00  Aligned_cols=129  Identities=33%  Similarity=0.452  Sum_probs=94.2

Q ss_pred             CCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCC-----HHHHHHHHHCCC---CCCCCCC
Q 037006          167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGE-----ALIVELLLARKA---STERSET  238 (541)
Q Consensus       167 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~-----~~iv~~Ll~~g~---~~~~~~~  238 (541)
                      ...+..+.+++|.|+..+..++++++++.|++++.++.. |.||||+|+..|+     .+++++|++.|+   ..+..+.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDAD-GDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCC-CCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            344556777778887777777777777777777666555 7777777777777     777777777777   4445577


Q ss_pred             CCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCC
Q 037006          239 STWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANG  296 (541)
Q Consensus       239 ~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g  296 (541)
                      .|+||||+|+..|+.+++++|++.|++++..+..|.|++++|+..++.++++.+++.+
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            7777777777777777777777777777777777777777777777777777777654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.51  E-value=1.6e-14  Score=101.91  Aligned_cols=55  Identities=40%  Similarity=0.704  Sum_probs=25.8

Q ss_pred             HHHcC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHH
Q 037006          413 LIDKG-IDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA  467 (541)
Q Consensus       413 Ll~~g-~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  467 (541)
                      |+++| ++++.+|..|+||||+|+.+|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45666 67777777777777777777777777777777777777777777777776

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=8.4e-14  Score=134.63  Aligned_cols=117  Identities=36%  Similarity=0.457  Sum_probs=107.2

Q ss_pred             hHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHH
Q 037006          365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTE  444 (541)
Q Consensus       365 l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~  444 (541)
                      |..|+..|.+++|+..+..--|+...+..|.|+||-|+..||.+||+||++.|+|+|..|.+|+||||+|+.+++.-+++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCCcccC-CCCCCHHHHHH--HcCcHHHHHHHHh
Q 037006          445 LLVKKGADVEART-SKNVSPMQIAE--CLHYAGISRILMH  481 (541)
Q Consensus       445 ~Ll~~ga~~~~~~-~~g~t~l~~A~--~~~~~~i~~~Ll~  481 (541)
                      .|++.|+-|-+.+ .++.||.+-+.  .-|+.++.+||-.
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999887654 56788887764  4588999999964

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.49  E-value=9.5e-14  Score=148.98  Aligned_cols=104  Identities=34%  Similarity=0.507  Sum_probs=96.2

Q ss_pred             hHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHH
Q 037006          365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTE  444 (541)
Q Consensus       365 l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~  444 (541)
                      ++.|+..|+.++++.|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++
T Consensus        86 L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~  165 (664)
T PTZ00322         86 LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQ  165 (664)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHH
Confidence            67788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHC-------CCCCcccCCCCCCHHHHHH
Q 037006          445 LLVKK-------GADVEARTSKNVSPMQIAE  468 (541)
Q Consensus       445 ~Ll~~-------ga~~~~~~~~g~t~l~~A~  468 (541)
                      +|+++       |++.+..+..|.+|+..+.
T Consensus       166 ~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        166 LLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            99999       8888888888887766553

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.48  E-value=8.6e-14  Score=97.75  Aligned_cols=54  Identities=43%  Similarity=0.808  Sum_probs=36.7

Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHH
Q 037006          394 GWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLV  447 (541)
Q Consensus       394 g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  447 (541)
                      |+||||+|+..|+.+++++|+++|+|+|.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            567777777777777777777777777777777777777777777777777775

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=6.3e-14  Score=98.88  Aligned_cols=55  Identities=51%  Similarity=0.718  Sum_probs=33.6

Q ss_pred             HHHcC-CCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHH
Q 037006          380 LIEAG-AAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCA  434 (541)
Q Consensus       380 Ll~~g-~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A  434 (541)
                      |+++| .+++.+|..|.||||+||.+|+.+++++|++.|+|++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 89999999999999999999999999999999999999999999999997

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.45  E-value=4.7e-13  Score=143.65  Aligned_cols=98  Identities=28%  Similarity=0.405  Sum_probs=90.9

Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHH
Q 037006          396 TALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGI  475 (541)
Q Consensus       396 t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i  475 (541)
                      +.|+.|+..|+.+++++|++.|+++|.+|..|+||||+|+.+|+.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC-------CCCCCCCcccc
Q 037006          476 SRILMHG-------GATKDGIQQTN  493 (541)
Q Consensus       476 ~~~Ll~~-------ga~~~~~~~~~  493 (541)
                      +++|+++       |++.+.....+
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g  188 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTG  188 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCC
Confidence            9999998       66655444433

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.42  E-value=1.2e-12  Score=117.70  Aligned_cols=121  Identities=28%  Similarity=0.300  Sum_probs=106.1

Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCH
Q 037006          241 WGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYE  320 (541)
Q Consensus       241 ~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~  320 (541)
                      ..+|.-++..|+.+....|++.--++|.+|..|.++|..|+..|+.++++.|++.|+|+|......+.||||+|+..|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            45788888888888888888776668889999999999999999999999999999999988878889999999999999


Q ss_pred             HHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhc
Q 037006          321 QMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKL  361 (541)
Q Consensus       321 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~  361 (541)
                      ++.++|++.|+.....+.-|+|+-.+|+.-|+.+++..+.+
T Consensus        93 dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   93 DVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             hHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            99999999999999999999999999999999988877643

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.41  E-value=5.5e-13  Score=93.63  Aligned_cols=54  Identities=31%  Similarity=0.535  Sum_probs=46.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHH
Q 037006          427 GYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM  480 (541)
Q Consensus       427 g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll  480 (541)
                      |+||||+|++.|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999999999999999999999999999999996

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.34  E-value=4.2e-12  Score=123.08  Aligned_cols=114  Identities=29%  Similarity=0.361  Sum_probs=73.0

Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHH
Q 037006          214 AAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLL  293 (541)
Q Consensus       214 A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll  293 (541)
                      |+..|.+|+|+-.+..--|+...+..|-|+||-|+..||.+||++|++.|+++|..|.+||||||+|+..++..+++.|+
T Consensus       557 aaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLV  636 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLV  636 (752)
T ss_pred             hhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHH
Confidence            56666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HCCCCCCccCCCCCCcHHHHHH--HcCCHHHHHHHH
Q 037006          294 ANGARPDIRNARDGDTPLHITA--SLGYEQMVKLLL  327 (541)
Q Consensus       294 ~~g~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll  327 (541)
                      +.|+.+-..+-.++.|+..-+-  +.|...+.+||.
T Consensus       637 e~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  637 ESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             hccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            6666665555555666554432  345556666665

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.96  E-value=3.2e-10  Score=115.75  Aligned_cols=83  Identities=41%  Similarity=0.562  Sum_probs=79.1

Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHH
Q 037006          387 INGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE-DGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQ  465 (541)
Q Consensus       387 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~  465 (541)
                      .|..|..|+|+||+|+..+..++++||+++|+|++.+|. .|+||||.|+.+|+++++-+||++|+.+...|+.|.+||+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            566799999999999999999999999999999999997 7999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 037006          466 IAEC  469 (541)
Q Consensus       466 ~A~~  469 (541)
                      .-++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            8876

>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm

Probab=98.90  E-value=6.4e-09  Score=85.04  Aligned_cols=91  Identities=40%  Similarity=0.630  Sum_probs=71.6

Q ss_pred             cccCCCCeEEEEecCCCcccceEEEeecccccceeEEEeecCCcceeecCCCccccCCccceeeeeecCCCCCCCCCCCC
Q 037006            5 VSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDSFP   84 (541)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~p~s~~   84 (541)
                      |+++|++++.+..+.++..++.|+|+|.... ++||+++++++.+|.|+|..|+|.|..+..+++.  +.+....+....
T Consensus         2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~-~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~--~~~~~~~~~~~~   78 (109)
T PF00635_consen    2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDK-PIAFKIKTTNPNRYRVKPSYGIIEPGESVEITIT--FQPFDFEPSNKK   78 (109)
T ss_dssp             CEEESSSEEEEESSTSS-EEEEEEEEE-SSS-EEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEE--E-SSSTTTTSTS
T ss_pred             eEEeCCcceEEcCCCCceEEEEEEEECCCCC-cEEEEEEcCCCceEEecCCCEEECCCCEEEEEEE--EEecccCCCCCC
Confidence            6789988999999989999999999998888 8999999999999999999999999999999987  444433332222


Q ss_pred             CCCcceeeeecccCCC
Q 037006           85 HCDDSFLLHSVVVPGA  100 (541)
Q Consensus        85 ~~~~~~l~~~~~~~~~  100 (541)
                        .+.|.+.++..+..
T Consensus        79 --~dkf~I~~~~~~~~   92 (109)
T PF00635_consen   79 --KDKFLIQSIVVPDN   92 (109)
T ss_dssp             --SEEEEEEEEEE-TT
T ss_pred             --CCEEEEEEEEcCCC
Confidence              78899998877644

These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.87  E-value=2.2e-09  Score=103.26  Aligned_cols=93  Identities=23%  Similarity=0.357  Sum_probs=87.4

Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCcccCCCCCCHHHHHHHc
Q 037006          392 LHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKK-GADVEARTSKNVSPMQIAECL  470 (541)
Q Consensus       392 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~  470 (541)
                      .++.-.+++|++.|.+..++.+.-.|.|++.+|.+.+|+||.|+..|+.+++++|++. +.+++.+|..|+|||+-|...
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            4566789999999999999999999999999999999999999999999999999987 899999999999999999999


Q ss_pred             CcHHHHHHHHhCCC
Q 037006          471 HYAGISRILMHGGA  484 (541)
Q Consensus       471 ~~~~i~~~Ll~~ga  484 (541)
                      ++.+++++|-++-.
T Consensus       584 ~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  584 KHKEVVKLLEEAQY  597 (622)
T ss_pred             CcHHHHHHHHHHhc
Confidence            99999999987644

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.85  E-value=1.1e-08  Score=98.91  Aligned_cols=83  Identities=28%  Similarity=0.352  Sum_probs=44.9

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHH
Q 037006          398 LHRASFKGKIEVVRMLIDKGIDVDAKDE-DGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGIS  476 (541)
Q Consensus       398 L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~  476 (541)
                      ||..++.|+.+..--||..|+++|..+. .|.||||.|++.|+.--+++|+=+|||+.+.|..|.||++||...||-++.
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~la  216 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELA  216 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHH
Confidence            4555555555555555555555554443 455555555555555555555555555555555555555555555555444


Q ss_pred             HHHH
Q 037006          477 RILM  480 (541)
Q Consensus       477 ~~Ll  480 (541)
                      +-|+
T Consensus       217 eRl~  220 (669)
T KOG0818|consen  217 ERLV  220 (669)
T ss_pred             HHHH
Confidence            4443

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.83  E-value=2.6e-08  Score=97.87  Aligned_cols=146  Identities=18%  Similarity=0.229  Sum_probs=93.7

Q ss_pred             CCCCCCCCccccccchhhhhhcCCceeecCcHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCH
Q 037006          107 STLDSVPSDWFTTRKKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRP  186 (541)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~  186 (541)
                      ....+.|+.|.+..-+. +.++++.  -++. -+..|+..+++--+++...++..    +...+.+..+.||+|+..|+-
T Consensus       841 ~pq~p~ps~~~spapR~-l~~~~ap--pise-eil~av~~~D~~klqE~h~~gg~----ll~~~~~~~sllh~a~~tg~~  912 (1004)
T KOG0782|consen  841 QPQQPIPSTSTSPAPRY-LNSRRAP--PISE-EILRAVLSSDLMKLQETHLNGGS----LLIQGPDHCSLLHYAAKTGNG  912 (1004)
T ss_pred             CCCCCCCCCCCCccchh-hccCCCC--CccH-HHHHHHHhccHHHHHHHHhcCCc----eEeeCcchhhHHHHHHhcCCh
Confidence            34456666666654332 3333322  1233 36678888887767776666643    566778889999999999999


Q ss_pred             HHHHHHHhcCCC--CcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHH
Q 037006          187 DIVQLLLEFGPD--VESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLI  261 (541)
Q Consensus       187 ~~v~~Ll~~g~~--~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~  261 (541)
                      |+|+|++++|+.  .+..+.. |.|+||-|+..++-.+.++|++.|+.....|..|.||-..|-..|+.++.-||-.
T Consensus       913 eivkyildh~p~elld~~de~-get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  913 EIVKYILDHGPSELLDMADET-GETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHHHhcCCHHHHHHHhhh-hhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            999999999874  2333322 6666666666666666666666666666666666666666666666666665543

>PF13606 Ank_3: Ankyrin repeat

Probab=98.83  E-value=4.6e-09  Score=62.95  Aligned_cols=28  Identities=39%  Similarity=0.713  Sum_probs=16.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCc
Q 037006          427 GYTALHCAVESGHTDVTELLVKKGADVE  454 (541)
Q Consensus       427 g~tpL~~A~~~g~~~~v~~Ll~~ga~~~  454 (541)
                      |+||||+|++.|+.++|++|+++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5555555555555555555555555554

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.80  E-value=1.8e-08  Score=98.96  Aligned_cols=118  Identities=26%  Similarity=0.314  Sum_probs=106.0

Q ss_pred             hHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCChHHHHHHHcCCHHH
Q 037006          365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGID--VDAKDEDGYTALHCAVESGHTDV  442 (541)
Q Consensus       365 l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d--~~~~d~~g~tpL~~A~~~g~~~~  442 (541)
                      +..|+..+++--++....+|.++-.++.+..|.||+|+..|+-++|+|++++|..  ++..|..|.|+||-|+..++-.+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            5667777776666777778888888899999999999999999999999999865  67778999999999999999999


Q ss_pred             HHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhC
Q 037006          443 TELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHG  482 (541)
Q Consensus       443 v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~  482 (541)
                      .++|++.||.+-..|.+|.||-.-|.+.|..+++.+|...
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999999999999999999999999999754

>PF13606 Ank_3: Ankyrin repeat

Probab=98.78  E-value=8.2e-09  Score=61.84  Aligned_cols=30  Identities=47%  Similarity=0.766  Sum_probs=28.4

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCC
Q 037006          393 HGWTALHRASFKGKIEVVRMLIDKGIDVDA  422 (541)
Q Consensus       393 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~  422 (541)
                      +|+||||+||.+|+.++|++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999984

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.78  E-value=1.1e-08  Score=63.35  Aligned_cols=32  Identities=53%  Similarity=0.899  Sum_probs=21.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCcccC
Q 037006          426 DGYTALHCAVESGHTDVTELLVKKGADVEART  457 (541)
Q Consensus       426 ~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~  457 (541)
                      +|+||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            36666666666666667776666666666655

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.74  E-value=5.7e-09  Score=106.87  Aligned_cols=83  Identities=30%  Similarity=0.438  Sum_probs=40.7

Q ss_pred             CCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHH
Q 037006          267 NALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV  346 (541)
Q Consensus       267 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  346 (541)
                      |..|..|+|+||+|+..+..+++++||++|++++.++...|+||||.|+.+|+.+++..|+.+|+...+.|++|..||..
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~  125 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQF  125 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHH
Confidence            33444444555544444444445555555554444444445555555555555555555555554444455555555444


Q ss_pred             HHH
Q 037006          347 AAE  349 (541)
Q Consensus       347 A~~  349 (541)
                      .++
T Consensus       126 ~~r  128 (1267)
T KOG0783|consen  126 LSR  128 (1267)
T ss_pred             Hhh
Confidence            443

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.73  E-value=4.2e-08  Score=95.02  Aligned_cols=84  Identities=35%  Similarity=0.442  Sum_probs=79.2

Q ss_pred             hHHHHhhCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHH
Q 037006          365 LCVAARKGEVRTMQRLIEAGAAINGKD-LHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVT  443 (541)
Q Consensus       365 l~~a~~~~~~~~~~~Ll~~g~~~~~~d-~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v  443 (541)
                      ++..++.|++++.-.|+..|+++|..+ ..|.||||.|++.|+.--+++|+-+|+|++..|.+|+||+.+|-..||-++.
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~la  216 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELA  216 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHH
Confidence            778889999999999999999999987 7899999999999999999999999999999999999999999999999888


Q ss_pred             HHHHH
Q 037006          444 ELLVK  448 (541)
Q Consensus       444 ~~Ll~  448 (541)
                      +.|++
T Consensus       217 eRl~e  221 (669)
T KOG0818|consen  217 ERLVE  221 (669)
T ss_pred             HHHHH
Confidence            87775

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.71  E-value=1.4e-08  Score=97.78  Aligned_cols=87  Identities=33%  Similarity=0.487  Sum_probs=83.3

Q ss_pred             hHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHH
Q 037006          365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDK-GIDVDAKDEDGYTALHCAVESGHTDVT  443 (541)
Q Consensus       365 l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpL~~A~~~g~~~~v  443 (541)
                      +..|++.|++..++.+.-.|.|++..|++.+|+||.||.-|+.+++++|++. +.|++.+|..|+|||.-|...+|.+++
T Consensus       510 ~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~  589 (622)
T KOG0506|consen  510 VMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVV  589 (622)
T ss_pred             hhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHH
Confidence            7789999999999999999999999999999999999999999999999997 899999999999999999999999999


Q ss_pred             HHHHHCCC
Q 037006          444 ELLVKKGA  451 (541)
Q Consensus       444 ~~Ll~~ga  451 (541)
                      ++|-+.-.
T Consensus       590 k~L~~~~~  597 (622)
T KOG0506|consen  590 KLLEEAQY  597 (622)
T ss_pred             HHHHHHhc
Confidence            99988744

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.67  E-value=3.2e-08  Score=61.15  Aligned_cols=33  Identities=36%  Similarity=0.724  Sum_probs=31.1

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Q 037006          393 HGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE  425 (541)
Q Consensus       393 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~  425 (541)
                      +|+||||+|+..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            589999999999999999999999999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.64  E-value=1e-07  Score=94.16  Aligned_cols=92  Identities=26%  Similarity=0.354  Sum_probs=81.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCC--CC--CCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCc
Q 037006          397 ALHRASFKGKIEVVRMLIDKGID--VD--AKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHY  472 (541)
Q Consensus       397 ~L~~Aa~~g~~~~v~~Ll~~g~d--~~--~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  472 (541)
                      -|..|+...++..+-+||.+|-.  +|  ..+.+|+|+||+|++.|+..+.++|+=+|+|+-++|..|+|+|.||.+.|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            36778888889999999999843  33  345688999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCC
Q 037006          473 AGISRILMHGGATKDG  488 (541)
Q Consensus       473 ~~i~~~Ll~~ga~~~~  488 (541)
                      .+++++|+++|.-.+.
T Consensus       707 qec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  707 QECIDVLLQYGCPDEC  722 (749)
T ss_pred             HHHHHHHHHcCCCccc
Confidence            9999999999986553

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.57  E-value=1.5e-07  Score=92.64  Aligned_cols=86  Identities=26%  Similarity=0.362  Sum_probs=60.0

Q ss_pred             HHHHHHhcCCHHHHHHHHH--cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHH
Q 037006          397 ALHRASFKGKIEVVRMLID--KGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAG  474 (541)
Q Consensus       397 ~L~~Aa~~g~~~~v~~Ll~--~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  474 (541)
                      |||+++.....+-+..++.  .+..++.+|..|+||||+|+..|+.+.++.|+.+||++..+|+.|++|||-|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            4777777666554444332  24567777777777777777777777777777777777777777777777777777776


Q ss_pred             HHHHHHhC
Q 037006          475 ISRILMHG  482 (541)
Q Consensus       475 i~~~Ll~~  482 (541)
                      ++..++.+
T Consensus       103 ~i~~vlr~  110 (560)
T KOG0522|consen  103 IITEVLRH  110 (560)
T ss_pred             HHHHHHHH
Confidence            66665543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.54  E-value=2.4e-07  Score=91.63  Aligned_cols=89  Identities=33%  Similarity=0.456  Sum_probs=80.2

Q ss_pred             hHHHHhhCCHHHHHHHHHcCCC--CCC--CCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCH
Q 037006          365 LCVAARKGEVRTMQRLIEAGAA--ING--KDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHT  440 (541)
Q Consensus       365 l~~a~~~~~~~~~~~Ll~~g~~--~~~--~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~  440 (541)
                      +..|....++..+-.|+.+|..  +|.  .+.+|+|+||+||..|++.+.++|+=+|+|+-.+|..|+|+|.||-..|.-
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            6778888899999999999854  332  356789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCC
Q 037006          441 DVTELLVKKGADV  453 (541)
Q Consensus       441 ~~v~~Ll~~ga~~  453 (541)
                      +|+..|+++|+.-
T Consensus       708 ec~d~llq~gcp~  720 (749)
T KOG0705|consen  708 ECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999999764

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=3.5e-07  Score=84.75  Aligned_cols=95  Identities=28%  Similarity=0.546  Sum_probs=78.9

Q ss_pred             CcccccCCCCeEEEEecCCCcccceEEEeecccccceeEEEeecCCcceeecCCCccccCCccceeeeeecCCCCCCCCC
Q 037006            2 DRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPD   81 (541)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~p~   81 (541)
                      +.++.++|..++.|.+++...-+..++|+|. ...+|||||++|.|.+|+|+|+.|+|.|.++..+++.  +++....|.
T Consensus         6 ~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~-t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~--~q~~~~~P~   82 (218)
T KOG0439|consen    6 ESLLEIEPSDELVFPLPLNEQVKCSLTLKNP-TKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVT--HQPFEKSPP   82 (218)
T ss_pred             cCccccCCCceEEeccCCCceEEEEEEEecC-CCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEE--eccCccCch
Confidence            3578899988999999999777799999998 5559999999999999999999999999999999986  555445465


Q ss_pred             CCCCCCcceeeeecccCCC
Q 037006           82 SFPHCDDSFLLHSVVVPGA  100 (541)
Q Consensus        82 s~~~~~~~~l~~~~~~~~~  100 (541)
                      .+ .+-+.|++..+..+..
T Consensus        83 d~-~~r~kF~v~~~~~~~~  100 (218)
T KOG0439|consen   83 DF-KSRHKFLIQSLKAPPP  100 (218)
T ss_pred             hh-cccceEEEEEEecCCc
Confidence            55 3678888887666544

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.51  E-value=4.9e-07  Score=94.20  Aligned_cols=122  Identities=26%  Similarity=0.341  Sum_probs=93.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC
Q 037006          139 VLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAG  218 (541)
Q Consensus       139 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g  218 (541)
                      -...|++.|+...|+..++......-.+|+.|.-|+++|+.|+.+.+.|++++|++++...        ..+|.+|+..|
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~   99 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVG   99 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHH
Confidence            4667999999999999998766544558999999999999999999999999999987654        47899999999


Q ss_pred             CHHHHHHHHHCCCCCC----------CCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCC
Q 037006          219 EALIVELLLARKASTE----------RSETSTWGPIHLALRGGHLEVLKLLLIKGANVNA  268 (541)
Q Consensus       219 ~~~iv~~Ll~~g~~~~----------~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~  268 (541)
                      ..++|++++.+.....          ..-..+-|||.+||..++.||++.|+.+|+.+..
T Consensus       100 ~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  100 SVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            9999999998754331          1112234566666666666666666666655543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.39  E-value=1.4e-06  Score=90.99  Aligned_cols=119  Identities=24%  Similarity=0.306  Sum_probs=97.8

Q ss_pred             hHHHHhhCCHHHHHHHHHcC----CCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCH
Q 037006          365 LCVAARKGEVRTMQRLIEAG----AAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHT  440 (541)
Q Consensus       365 l~~a~~~~~~~~~~~Ll~~g----~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~  440 (541)
                      ...|+..|+.-.++..++..    .++|..|.-|+++|+.|+.+.+.|++++|++++...       ..+|-+|+..|..
T Consensus        29 fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v  101 (822)
T KOG3609|consen   29 FLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSV  101 (822)
T ss_pred             HHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHH
Confidence            55677777777777777652    568889999999999999999999999999986655       3489999999999


Q ss_pred             HHHHHHHHCCCCC----------cccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCCc
Q 037006          441 DVTELLVKKGADV----------EARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQ  490 (541)
Q Consensus       441 ~~v~~Ll~~ga~~----------~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~~~~  490 (541)
                      ++|++++.+-...          ...-.-+.||+.+|+..++.||+++|++.|+......
T Consensus       102 ~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen  102 PLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             HHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence            9999999874322          1334457899999999999999999999999865443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.30  E-value=7.7e-07  Score=95.55  Aligned_cols=101  Identities=36%  Similarity=0.428  Sum_probs=89.1

Q ss_pred             HHcCCCCCCCC--CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCC
Q 037006          381 IEAGAAINGKD--LHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTS  458 (541)
Q Consensus       381 l~~g~~~~~~d--~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~  458 (541)
                      ..+++++|..+  ..|.|+||.|+..|..-++++|+++|+++|..|..|+||||.+...|+...+..|+++|++.++.+.
T Consensus       641 ~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~  720 (785)
T KOG0521|consen  641 LAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDP  720 (785)
T ss_pred             hcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCc
Confidence            34455555433  6789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHh
Q 037006          459 KNVSPMQIAECLHYAGISRILMH  481 (541)
Q Consensus       459 ~g~t~l~~A~~~~~~~i~~~Ll~  481 (541)
                      +|.+|+++|....+.+++=++.-
T Consensus       721 ~~~~~l~~a~~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  721 DGKLPLDIAMEAANADIVLLLRL  743 (785)
T ss_pred             cCcchhhHHhhhccccHHHHHhh
Confidence            99999999987777666655543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.29  E-value=2e-06  Score=73.47  Aligned_cols=139  Identities=19%  Similarity=0.288  Sum_probs=92.1

Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCC--C
Q 037006          384 GAAINGKDLHGWTALHRASFKGKIEVVRMLIDKG-IDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSK--N  460 (541)
Q Consensus       384 g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~--g  460 (541)
                      +.++|.+|..||||||.|+.-|+.+.+.||+.+| +++...|..|.+++.+|-+.|..+++..|.+.-.+-...++.  +
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~nss~~   81 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNSSRD   81 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccCCCC
Confidence            5688999999999999999999999999999999 899999999999999999999999999999874433332222  2


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhCCCCCC----CCcccccchhh------hhhcCCCccccccccccCccccCCCCccccCC
Q 037006          461 VSPMQIAECLHYAGISRILMHGGATKD----GIQQTNLRQVS------IQFGNGKVGRDQMEGKFGMKKKKLPRPRVMRG  530 (541)
Q Consensus       461 ~t~l~~A~~~~~~~i~~~Ll~~ga~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (541)
                      .++ .      +-|+.+..+...+..+    ....-....+.      +.+.-... =.++...+||...+..-++.++-
T Consensus        82 e~l-f------yCE~Cd~~ip~~~~snH~tSttHllsl~~~pa~k~~p~~i~pks~-GyrLl~~~GW~pe~GLGp~~~Gr  153 (223)
T KOG2384|consen   82 EAL-F------YCEVCDIYIPNSKKSNHFTSTTHLLSLQHIPANKFQPHLIKPKSL-GYRLLSQYGWSPEAGLGPENQGR  153 (223)
T ss_pred             Ccc-c------hhhhhhhhccCCCCccchhhHHHHhhhccCCCCCCCCCcCCCCCc-hHHHHHhcCCCcccCCCccccCc
Confidence            222 2      2355666665433322    11111111111      11111111 12677888998887766665543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.28  E-value=3e-06  Score=79.92  Aligned_cols=82  Identities=28%  Similarity=0.460  Sum_probs=56.3

Q ss_pred             hHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHH
Q 037006          365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTE  444 (541)
Q Consensus       365 l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~  444 (541)
                      ++.|++.|+++.+++|++.|.++|..|....+||.+|+..||.++|++|+++|+-.+.-..+|.-+ ||++.+  ..|-+
T Consensus        40 lceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLn--d~IR~  116 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALN--DRIRR  116 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhh--HHHHH
Confidence            677777788888888877777777777777777888877788888888887777655555556554 344433  23444


Q ss_pred             HHHHC
Q 037006          445 LLVKK  449 (541)
Q Consensus       445 ~Ll~~  449 (541)
                      +||.+
T Consensus       117 mllsy  121 (516)
T KOG0511|consen  117 MLLSY  121 (516)
T ss_pred             HHHHH
Confidence            55554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.28  E-value=1.9e-06  Score=73.59  Aligned_cols=69  Identities=25%  Similarity=0.344  Sum_probs=62.1

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCC-CCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q 037006          417 GIDVDAKDEDGYTALHCAVESGHTDVTELLVKKG-ADVEARTSKNVSPMQIAECLHYAGISRILMHGGAT  485 (541)
Q Consensus       417 g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~  485 (541)
                      +.++|.+|..|+|||++|+..|+.+.+.||+.+| +.+...|..|.+++.+|.+.|..+++..|.++-.+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            5688999999999999999999999999999999 89999999999999999999999999999876443

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

Probab=98.24  E-value=4e-06  Score=72.42  Aligned_cols=88  Identities=27%  Similarity=0.491  Sum_probs=67.5

Q ss_pred             cccCCCCeEEEEecCCCcccceEEEeecccccceeEEEeecCCcceeecCCCccccCCccceeeeeecCCCCCCCCCCCC
Q 037006            5 VSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDSFP   84 (541)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~p~s~~   84 (541)
                      |++.|  ++.|+--+-.+-..-+.++|.... +|+|||+||.|+-|+|+|..|.|-|-++..++++  |+...+-|.-=.
T Consensus         3 veisp--~~~fy~Plt~~ske~~sv~Nnspe-pvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVi--lq~l~eEpapdf   77 (242)
T COG5066           3 VEISP--QTTFYVPLTNKSKEMFSVQNNSPE-PVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVI--LQGLTEEPAPDF   77 (242)
T ss_pred             eEecC--ceEEecccccccceeeEeecCCCC-ceeEEeeccCCcceeEcCCCceeccCCeeEEEEE--eeccccCCCCCc
Confidence            56666  455555444444566777887666 8999999999999999999999999999999999  555666663333


Q ss_pred             CCCcceeeeeccc
Q 037006           85 HCDDSFLLHSVVV   97 (541)
Q Consensus        85 ~~~~~~l~~~~~~   97 (541)
                      .|.|.||+.+.-.
T Consensus        78 KCrdKFLiqs~~~   90 (242)
T COG5066          78 KCRDKFLIQSYRF   90 (242)
T ss_pred             cccceeEEEEecc
Confidence            7899999987433

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.17  E-value=5.3e-06  Score=81.98  Aligned_cols=86  Identities=29%  Similarity=0.404  Sum_probs=52.5

Q ss_pred             HHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHH
Q 037006          210 PLEAAAAAGEALIVELLLA--RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRD  287 (541)
Q Consensus       210 ~L~~A~~~g~~~iv~~Ll~--~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~  287 (541)
                      |+|+++.....+-+..++.  ....++..|..|.||||+|+.-||.+.++.|+..|+++..++..|++|||-|+..|+..
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            4666666555544433222  23345566666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHC
Q 037006          288 CARLLLAN  295 (541)
Q Consensus       288 ~v~~Ll~~  295 (541)
                      ++..++.+
T Consensus       103 ~i~~vlr~  110 (560)
T KOG0522|consen  103 IITEVLRH  110 (560)
T ss_pred             HHHHHHHH
Confidence            66665543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.98  E-value=1.8e-05  Score=74.85  Aligned_cols=86  Identities=28%  Similarity=0.350  Sum_probs=71.0

Q ss_pred             ChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHH
Q 037006          395 WTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAG  474 (541)
Q Consensus       395 ~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  474 (541)
                      .--|..||+.|.++.|++|++.|.++|..|....+||.+|+..||..+|++||++||-...-.-+|...+ |++.+  ..
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~-YgaLn--d~  113 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH-YGALN--DR  113 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh-hhhhh--HH
Confidence            3458999999999999999999999999999999999999999999999999999998876666676554 44332  34


Q ss_pred             HHHHHHhCC
Q 037006          475 ISRILMHGG  483 (541)
Q Consensus       475 i~~~Ll~~g  483 (541)
                      |-++|+++.
T Consensus       114 IR~mllsyd  122 (516)
T KOG0511|consen  114 IRRMLLSYD  122 (516)
T ss_pred             HHHHHHHHH
Confidence            555666543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.93  E-value=1.2e-05  Score=86.62  Aligned_cols=86  Identities=36%  Similarity=0.509  Sum_probs=57.2

Q ss_pred             CCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcC
Q 037006          239 STWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLG  318 (541)
Q Consensus       239 ~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g  318 (541)
                      .|.|+||.|+..|..-++++|+++|+++|..|..|++|+|.+...|+...+..++++|++.+..+ .+|.+||.+|....
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~-~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFD-PDGKLPLDIAMEAA  733 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccC-ccCcchhhHHhhhc
Confidence            45666777777777777777777777777777777777777777777777777777777766666 56677777766554


Q ss_pred             CHHHHHH
Q 037006          319 YEQMVKL  325 (541)
Q Consensus       319 ~~~~v~~  325 (541)
                      +.+++-+
T Consensus       734 ~~d~~~l  740 (785)
T KOG0521|consen  734 NADIVLL  740 (785)
T ss_pred             cccHHHH
Confidence            4444333

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.85  E-value=1.5e-05  Score=85.30  Aligned_cols=125  Identities=15%  Similarity=0.128  Sum_probs=81.1

Q ss_pred             CCCCCCChHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHH-CCCCCcccCCCCCCHHHH
Q 037006          389 GKDLHGWTALHRASFKGKIEVVRMLIDK-GIDVDAKDEDGYTALHCAVESGHTDVTELLVK-KGADVEARTSKNVSPMQI  466 (541)
Q Consensus       389 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~  466 (541)
                      .....|+|.+|+++..++.-+++.+++- |......|.+|.-.+|+ |..++++++-+|.. .|..++.+|..|+||||+
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            3445677778888877777777777775 55555666666667777 34445555544443 477777778888888888


Q ss_pred             HHHcCcHHHHHHHHhCCCCCC------CCcccccchhhhhhcCCCccccccccc
Q 037006          467 AECLHYAGISRILMHGGATKD------GIQQTNLRQVSIQFGNGKVGRDQMEGK  514 (541)
Q Consensus       467 A~~~~~~~i~~~Ll~~ga~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (541)
                      |+..|+..++..|++.|++..      .....+.+...++..+++.++...+.+
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            888888888887777776632      222335556666666666666544433

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.83  E-value=1.7e-05  Score=84.82  Aligned_cols=122  Identities=20%  Similarity=0.204  Sum_probs=87.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCchHHHHHHhcCCHHHHHHHH-HcCCCCCCCCCCCChHHHHHHHhC
Q 037006          207 CSTPLEAAAAAGEALIVELLLAR-KASTERSETSTWGPIHLALRGGHLEVLKLLL-IKGANVNALTKDGNTALHLAVEDR  284 (541)
Q Consensus       207 ~~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll-~~g~~~~~~d~~g~t~L~~A~~~g  284 (541)
                      +.+.+|+++..+..-.++.+++- |......+.++...+|+++ .++.+..-+++ -.|..++.+|..|+||||||+..|
T Consensus       574 ~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G  652 (975)
T KOG0520|consen  574 DMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRG  652 (975)
T ss_pred             chHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccchHhhcC
Confidence            67888888888888888888775 6666666777777888844 44455444433 447778888888888888888888


Q ss_pred             CHHHHHHHHHCCCCCCccCC-----CCCCcHHHHHHHcCCHHHHHHHHHc
Q 037006          285 RRDCARLLLANGARPDIRNA-----RDGDTPLHITASLGYEQMVKLLLQK  329 (541)
Q Consensus       285 ~~~~v~~Ll~~g~~~~~~~~-----~~g~t~L~~A~~~g~~~~v~~Ll~~  329 (541)
                      +..++..|++.|++.....+     ..|.|+-..|-.+|+..+.-+|-+.
T Consensus       653 ~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  653 REKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            88888888887776654322     3477777888888887777776654

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.13  E-value=0.0008  Score=66.32  Aligned_cols=64  Identities=17%  Similarity=0.281  Sum_probs=52.9

Q ss_pred             CCHHHHHHHHHcCCCCC------CCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHH
Q 037006          405 GKIEVVRMLIDKGIDVD------AKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE  468 (541)
Q Consensus       405 g~~~~v~~Ll~~g~d~~------~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  468 (541)
                      .-...+++|.+++++.|      ..+..--|+||+|+..|.-++|.+||+.|+|...+|..|+||+.++.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            34678888888877665      33445678999999999999999999999999999999999999886

>smart00248 ANK ankyrin repeats

Probab=96.91  E-value=0.0017  Score=37.68  Aligned_cols=27  Identities=52%  Similarity=0.829  Sum_probs=15.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCC
Q 037006          427 GYTALHCAVESGHTDVTELLVKKGADV  453 (541)
Q Consensus       427 g~tpL~~A~~~g~~~~v~~Ll~~ga~~  453 (541)
                      |.||+|+|+..++.+++++|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            455555555555555655555555543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.77  E-value=0.0022  Score=63.33  Aligned_cols=63  Identities=27%  Similarity=0.289  Sum_probs=55.2

Q ss_pred             CHHHHHHHHHcCCCCCCC------CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHH
Q 037006          373 EVRTMQRLIEAGAAINGK------DLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAV  435 (541)
Q Consensus       373 ~~~~~~~Ll~~g~~~~~~------d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~  435 (541)
                      ....+++|.+++.+.|..      +..--|+||+|+.+|..++|.+||+.|+|+..+|..|.||..++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            356789999998887643      345679999999999999999999999999999999999999887

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.75  E-value=0.01  Score=51.31  Aligned_cols=142  Identities=18%  Similarity=0.144  Sum_probs=75.7

Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHH
Q 037006          275 TALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR  354 (541)
Q Consensus       275 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~  354 (541)
                      ..+..|+..+...+++..-+...+-    ....++.+-.||+..+.++|+++-+.   ...  .+-.+.+..|....+.+
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qn---L~i--~~~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQN---LHI--YNPEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhc---cCC--CCchhhhhhhhhccchh
Confidence            4455677777777766665543321    12355666677777777777777332   111  11233445555555444


Q ss_pred             HHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCC--CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHH
Q 037006          355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDL--HGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALH  432 (541)
Q Consensus       355 ~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~--~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~  432 (541)
                      +...             |    -.++.++...-...|.  --..-|..|+.+|-...+...+++|.+++.      ++|.
T Consensus       119 Lysl-------------G----Y~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls  175 (192)
T PF03158_consen  119 LYSL-------------G----YKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLS  175 (192)
T ss_pred             HHHH-------------H----HHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHH
Confidence            3210             0    0112222111100110  001235677888888888888887777653      6778


Q ss_pred             HHHHcCCHHHHHHHHH
Q 037006          433 CAVESGHTDVTELLVK  448 (541)
Q Consensus       433 ~A~~~g~~~~v~~Ll~  448 (541)
                      .|+.+++-+++.+++.
T Consensus       176 ~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  176 QAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHhhHHHHHHHhhc
Confidence            8888888777777764

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=96.72  E-value=0.0028  Score=36.66  Aligned_cols=27  Identities=41%  Similarity=0.706  Sum_probs=18.9

Q ss_pred             CccHHHHHHHcCCHHHHHHHHhcCCCC
Q 037006          173 GQTLLHIAIAQRRPDIVQLLLEFGPDV  199 (541)
Q Consensus       173 g~t~L~~A~~~g~~~~v~~Ll~~g~~~  199 (541)
                      |.||+|+|+..++.+++++|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            567777777777777777777766654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.52  E-value=0.029  Score=48.55  Aligned_cols=45  Identities=16%  Similarity=0.135  Sum_probs=27.6

Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 037006          276 ALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLL  327 (541)
Q Consensus       276 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  327 (541)
                      -|.+|+..|-...+.-.+++|.+++.       +.|..|+.+++..++.+++
T Consensus       146 hl~~a~~kgll~F~letlkygg~~~~-------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  146 HLEKAAAKGLLPFVLETLKYGGNVDI-------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCcccH-------HHHHHHHHhhHHHHHHHhh
Confidence            35556666666666666666665532       4566666666666666654

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.40  E-value=0.029  Score=49.97  Aligned_cols=46  Identities=13%  Similarity=0.098  Sum_probs=24.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 037006          176 LLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLAR  229 (541)
Q Consensus       176 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~  229 (541)
                      .|.-|+..-+++-+.-++...-+        -.+++-+|+..+..+++.+|+++
T Consensus       156 sledAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~  201 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSK  201 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhh
Confidence            34556666666555544432111        24566666666666666666653

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.33  E-value=0.019  Score=51.12  Aligned_cols=92  Identities=17%  Similarity=0.228  Sum_probs=64.0

Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC----CCChHHHHHHH--cCCHHHHHHHHHCC-CCCcc---cCCCCCCH
Q 037006          394 GWTALHRASFKGKIEVVRMLIDKGIDVDAKDE----DGYTALHCAVE--SGHTDVTELLVKKG-ADVEA---RTSKNVSP  463 (541)
Q Consensus       394 g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~----~g~tpL~~A~~--~g~~~~v~~Ll~~g-a~~~~---~~~~g~t~  463 (541)
                      ..++|.+|+.++..+++-+|+.+ .+....|.    .+.--+.|+..  ..+..++++++++| +++|.   +.+.|.|.
T Consensus       179 A~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  179 AHQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            45677788877888888888875 11111111    12223444433  23678999999998 57775   46679999


Q ss_pred             HHHHHHcCcHHHHHHHHhCCCCC
Q 037006          464 MQIAECLHYAGISRILMHGGATK  486 (541)
Q Consensus       464 l~~A~~~~~~~i~~~Ll~~ga~~  486 (541)
                      |+-|..+++.+++.+||++||..
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCccc
Confidence            99999999999999999999853

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=94.40  E-value=0.17  Score=40.27  Aligned_cols=66  Identities=24%  Similarity=0.530  Sum_probs=53.3

Q ss_pred             cccCCCCeEEE-EecCCCcccceEEEeecccccceeEEEeecC--CcceeecCCCccccCCccceeeeeec
Q 037006            5 VSLEPSNLVAI-RIEPGQKCSGELTLRNVMHTMPVAFRIQPTN--KARYTVKPQSGIISPLATLSVEIAYH   72 (541)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~p~~~~~~~~~~~   72 (541)
                      ++++| .++.| ++..|+.=.-+++|+|.... |.-|+++...  ...|.+.|..|.+.|..+..+++.+.
T Consensus         4 l~v~P-~~ldFG~v~~g~~~~~~v~l~N~s~~-p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~   72 (102)
T PF14874_consen    4 LEVSP-KELDFGNVFVGQTYSRTVTLTNTSSI-PARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFS   72 (102)
T ss_pred             EEEeC-CEEEeeEEccCCEEEEEEEEEECCCC-CEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEE
Confidence            56777 55555 56788888899999997665 8999987654  45699999999999999999998853

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.54  E-value=0.13  Score=38.43  Aligned_cols=46  Identities=22%  Similarity=0.199  Sum_probs=22.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 037006          176 LLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLAR  229 (541)
Q Consensus       176 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~  229 (541)
                      .+..|+.+|+.|+++.+++.+ .+       ....+..|+...+.++++||+++
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~-------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KP-------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-cc-------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            445555555555555555433 11       12345555555555555555543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.80  E-value=0.23  Score=37.09  Aligned_cols=49  Identities=20%  Similarity=0.336  Sum_probs=41.8

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 037006          136 GSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEF  195 (541)
Q Consensus       136 g~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  195 (541)
                      ....+..|+..|+.|+++.+++...+           ....|..|+...+.+++++|++.
T Consensus         6 t~~tl~~Ai~GGN~eII~~c~~~~~~-----------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    6 TKKTLEYAIIGGNFEIINICLKKNKP-----------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHhcc-----------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            45678999999999999999976532           14679999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PLN03218 maturation of RBCL 1; Provisional

Probab=92.44  E-value=5.4  Score=45.89  Aligned_cols=15  Identities=7%  Similarity=0.020  Sum_probs=7.5

Q ss_pred             HHHcCCHHHHHHHHh
Q 037006          143 LVKDGEMDDLREVLE  157 (541)
Q Consensus       143 a~~~g~~~~v~~ll~  157 (541)
                      .++.|..+....+++
T Consensus       416 ~~~~g~~~eAl~lf~  430 (1060)
T PLN03218        416 CKKQRAVKEAFRFAK  430 (1060)
T ss_pred             HHHCCCHHHHHHHHH
Confidence            344555555555444

>PLN03218 maturation of RBCL 1; Provisional

Probab=90.95  E-value=6.1  Score=45.48  Aligned_cols=111  Identities=13%  Similarity=0.157  Sum_probs=53.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHH----HHHHHhcCCCCcccCCCCCCcHHHH
Q 037006          138 PVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDI----VQLLLEFGPDVESQGRCGCSTPLEA  213 (541)
Q Consensus       138 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~~~~t~L~~  213 (541)
                      ..+...++.|+.+....++..-....  .......-.+.+...+..|..+-    ++.+.+.|..++...   ..+.+..
T Consensus       442 ~LL~a~~k~g~~e~A~~lf~~M~~~G--l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvT---ynaLI~g  516 (1060)
T PLN03218        442 MLMSVCASSQDIDGALRVLRLVQEAG--LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT---FGALIDG  516 (1060)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHH
Confidence            34556667777777766665321100  01001122355566666777653    334445555544332   2345555


Q ss_pred             HHHcCCHH----HHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHH
Q 037006          214 AAAAGEAL----IVELLLARKASTERSETSTWGPIHLALRGGHLEV  255 (541)
Q Consensus       214 A~~~g~~~----iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~i  255 (541)
                      .++.|+.+    +.+.+.+.|..++..  .-.+.+...+..|+.+-
T Consensus       517 y~k~G~~eeAl~lf~~M~~~Gv~PD~v--TYnsLI~a~~k~G~~de  560 (1060)
T PLN03218        517 CARAGQVAKAFGAYGIMRSKNVKPDRV--VFNALISACGQSGAVDR  560 (1060)
T ss_pred             HHHCcCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHCCCHHH
Confidence            66666654    333444455444321  11224444555666653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	541
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		9e-30
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-23
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		5e-07
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		8e-23
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		8e-21
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-21
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		8e-21
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-20
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-20
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-20
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-20
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-19
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-19
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-19
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-19
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-18
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-18
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-18
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-18
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-17
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-17
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		7e-17
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		7e-17
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		9e-17
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-16
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-13
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-16
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		7e-05
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		4e-16
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		5e-16
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-15
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		5e-16
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-15
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		7e-16
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-11
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		9e-16
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-15
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-15
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		1e-14
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-14
1uoh_A	226	Human Gankyrin Length = 226		2e-14
1uoh_A	226	Human Gankyrin Length = 226		8e-10
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-14
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		8e-10
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-14
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-11
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-14
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-09
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-14
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-09
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-14
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		3e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-13
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		6e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-13
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-06
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		4e-13
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		6e-09
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		6e-13
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		6e-13
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		7e-11
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		1e-12
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		4e-12
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-07
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		4e-12
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-08
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		7e-12
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		8e-10
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		8e-12
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		9e-12
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		8e-10
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-11
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		5e-09
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-11
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		2e-11
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		8e-06
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		6e-11
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		8e-06
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		7e-11
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		7e-11
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		8e-11
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-10
1ycs_B	239	P53-53bp2 Complex Length = 239		1e-10
1ycs_B	239	P53-53bp2 Complex Length = 239		5e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-10
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		1e-10
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		5e-07
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-10
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-10
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-10
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		6e-10
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-09
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-09
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-09
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		1e-08
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		1e-08
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		1e-08
3so8_A	162	Crystal Structure Of Ankra Length = 162		1e-08
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-08
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		2e-08
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		7e-05
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-08
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		2e-08
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		1e-04
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		2e-04
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		2e-08
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		2e-04
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		2e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		3e-08
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		1e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		2e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		5e-08
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		5e-08
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		6e-08
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		7e-08
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		7e-08
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		8e-08
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		1e-07
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		1e-06
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		2e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		2e-07
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		2e-04
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		3e-07
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		3e-07
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		4e-07
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		4e-07
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		1e-06
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		2e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-06
3deo_A	183	Structural Basis For Specific Substrate Recognition		3e-06
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		3e-06
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		7e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		8e-06
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		8e-06
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		2e-04
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		8e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-05
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		5e-05
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		6e-05
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		6e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		9e-05
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		1e-04
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		1e-04
3kea_A	285	Structure Function Studies Of Vaccinia Virus Host-R		3e-04
1bi7_B	156	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-04
1dc2_A	156	Solution Nmr Structure Of Tumor Suppressor P16ink4a		4e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  128 bits (321), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 149/318 (46%), Gaps = 14/318 (4%)
Query: 174 QTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKAST 233
           QT LH A      ++V+LLLE   +       G  TP                  ++AS 
Sbjct: 81  QTPLHCAARIGHTNMVKLLLENNANPNLATTAG-HTPLHIAAREGHVETVLALLEKEASQ 139
Query: 234 ERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXX 293
                  + P+H+A + G + V +LLL + A+ NA  K+G T LH+AV            
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 199
Query: 294 XNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHS 353
             G  P    A +G TPLHI A     ++ + LLQ G +    +  G T   +AA+ GH+
Sbjct: 200 PRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 258
Query: 354 RLFDAL-------KLGDS-----LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRA 401
            +   L        LG+      L + A++G V     LI+ G  ++     G+T LH A
Sbjct: 259 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 318
Query: 402 SFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNV 461
           S  G I++V+ L+    DV+AK + GY+ LH A + GHTD+  LL+K GA     +S   
Sbjct: 319 SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGT 378
Query: 462 SPMQIAECLHYAGISRIL 479
           +P+ IA+ L Y  ++ +L
Sbjct: 379 TPLAIAKRLGYISVTDVL 396

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 133/287 (46%), Gaps = 28/287 (9%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
           P+H+A   GHL ++K LL +GA+ N       T LH+A              N A+ + +
Sbjct: 17  PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76
Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLG 362
            A+D  TPLH  A +G+  MVKLLL+  AN            ++A   GH+ L       
Sbjct: 77  -AKDDQTPLHCAARIGHTNMVKLLLENNANP-----------NLATTAGHTPLH------ 118
Query: 363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
               +AAR+G V T+  L+E  A+       G+T LH A+  GK+ V  +L+++    +A
Sbjct: 119 ----IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA 174
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMH- 481
             ++G T LH AV   + D+ +LL+ +G    +      +P+ IA   +   ++R L+  
Sbjct: 175 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234
Query: 482 -GGATKDGIQQTNLRQVSIQFGNGKVG----RDQMEGKFGMKKKKLP 523
            G A  + +Q      ++ Q G+ ++       Q  G  G K    P
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP 281

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%)
Query: 396 TALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEA 455
           T LH ASF G + +V+ L+ +G   +  +    T LH A  +GHT+V + L++  A V A
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 456 RTSKNVSPMQIAECLHYAGISRILMHGGATKD 487
           +   + +P+  A  + +  + ++L+   A  +
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score =  105 bits (261), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 90/146 (61%), Gaps = 21/146 (14%)
Query: 306 DGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSL 365
           +G TPLH+ A  G+ ++VKLLL+ GA+   ++K+G+T                      L
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT---------------------PL 39
Query: 366 CVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE 425
            +AAR G +  ++ L+EAGA +N KD +G T LH A+  G +EVV++L++ G DV+AKD+
Sbjct: 40  HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 99
Query: 426 DGYTALHCAVESGHTDVTELLVKKGA 451
           +G T LH A  +GH +V +LL++ GA
Sbjct: 100 NGRTPLHLAARNGHLEVVKLLLEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 98.6 bits (244), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 79/120 (65%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
           L +AAR G +  ++ L+EAGA +N KD +G T LH A+  G +EVV++L++ G DV+AKD
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
           ++G T LH A  +GH +V +LL++ GADV A+     +P+ +A    +  + ++L+  GA
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 85/146 (58%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +N KD  G+T LH A+ +G +E+V +L+  G DV
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +AKD+DGYT LH A   GH ++ E+L+K GADV A+     +P+ +A    +  I  +L+
Sbjct: 74  NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
             GA    +D   +T    +SI  GN
Sbjct: 134 KAGADVNAQDKFGKTAF-DISIDNGN 158

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 98.6 bits (244), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 21/166 (12%)
Query: 314 TASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGE 373
            A  G +  V++L+  GA+   ++K G T                      L +AAR+G 
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYT---------------------PLHLAAREGH 47
Query: 374 VRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHC 433
           +  ++ L++AGA +N KD  G+T LH A+ +G +E+V +L+  G DV+AKD+DGYT LH 
Sbjct: 48  LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 107
Query: 434 AVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
           A   GH ++ E+L+K GADV A+     +P  +A    +  I+ +L
Sbjct: 108 AAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 76/124 (61%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +N KD  G+T LH A+ +G +E+V +L+  G DV
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +AKD+DGYT LH A   GH ++ E+L+K GADV A+     +P+ +A    +  I  +L+
Sbjct: 62  NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 481 HGGA 484
             GA
Sbjct: 122 KAGA 125

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 87/150 (58%), Gaps = 4/150 (2%)
Query: 360 KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGID 419
           +LG  L  AA  G    ++ LIE GA +N  D  G T LH A+  G  EVV++LI KG D
Sbjct: 3   ELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD 62
Query: 420 VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
           V+AKD DG T LH A E+GH +V +LL+ KGADV A+ S   +P+  A    +  + ++L
Sbjct: 63  VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 480 MHGGA---TKDGIQQTNLRQVSIQFGNGKV 506
           +  GA   T D   +T L  ++ + GN +V
Sbjct: 123 ISKGADVNTSDSDGRTPL-DLAREHGNEEV 151

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 75/125 (60%)
Query: 360 KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGID 419
           +LG  L  AA  G    ++ LIE GA +N  D  G T LH A+ +G  E+V++LI KG D
Sbjct: 3   ELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD 62
Query: 420 VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
           V+AKD DG T LH A + GH ++ +LL+ KGADV A+ S   +P+  A    +  I ++L
Sbjct: 63  VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Query: 480 MHGGA 484
           +  GA
Sbjct: 123 ISKGA 127

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +N +D  GWT LH A+  G +E+V +L+  G DV
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +AKD  G T LH A   GH ++ E+L+K GADV A  S   +P+ +A    +  I  +L+
Sbjct: 74  NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
             GA    +D   +T    +SI  GN
Sbjct: 134 KNGADVNAQDKFGKTAF-DISIDNGN 158

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/146 (37%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +N  D  GWT LH A++ G +E+V +L+  G DV
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +A D  G T LH A + GH +V E+L+K GADV A      +P+ +A  + +  I  +L+
Sbjct: 74  NADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
             GA    +D   +T    +SI  GN
Sbjct: 134 KHGADVNAQDKFGKTAF-DISIDNGN 158

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +N  D  G T LH A++ G +E+V +L+  G DV
Sbjct: 14  LGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           DA D  GYT LH A   GH ++ E+L+K GADV A  S  ++P+ +A    Y  I  +L+
Sbjct: 74  DASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
             GA    +D   +T    +SI  GN
Sbjct: 134 KHGADVNAQDKFGKTAF-DISIDNGN 158

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/144 (35%), Positives = 77/144 (53%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G    ++ L+  GA +N  D+ GWT LH A++ G +E+V +L+  G DV
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +A D  G T LH A   GH ++ E+L+K GADV A+    ++P+ +A    +  I  +L+
Sbjct: 74  NAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLL 133
Query: 481 HGGATKDGIQQTNLRQVSIQFGNG 504
             GA  +   +       I   NG
Sbjct: 134 KYGADVNAQDKFGKTAFDISINNG 157

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 85/160 (53%), Gaps = 22/160 (13%)
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
           NGA P+  ++ DG TPLH  A  G++++VKLLL KGA+   ++  G+T    AAE GH  
Sbjct: 26  NGADPNASDS-DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKE 84
Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI 414
           +                     ++ L+  GA  N KD  G T LH A+  G  E+V++L+
Sbjct: 85  I---------------------VKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 123
Query: 415 DKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVE 454
            KG D +  D DG T L  A E G+ ++ +LL K+G  +E
Sbjct: 124 SKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 84/150 (56%), Gaps = 4/150 (2%)
Query: 360 KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGID 419
           +LG  L  AA  G    ++ L+E GA  N  D  G T LH A+  G  E+V++L+ KG D
Sbjct: 3   ELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGAD 62
Query: 420 VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
            +AKD DG T LH A E+GH ++ +LL+ KGAD  A+ S   +P+  A    +  I ++L
Sbjct: 63  PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Query: 480 MHGGA---TKDGIQQTNLRQVSIQFGNGKV 506
           +  GA   T D   +T L  ++ + GN ++
Sbjct: 123 LSKGADPNTSDSDGRTPL-DLAREHGNEEI 151

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G    ++ L+  GA +N +D  GWT LH A+F G +E+V +L+  G DV
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +A D  G T L  A   GH ++ E+L+K GADV A   +  +P+ +A    +  I  +L+
Sbjct: 74  NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
             GA    +D   +T    +SI  GN
Sbjct: 134 KNGADVNAQDKFGKTAF-DISIDNGN 158

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 4/150 (2%)
Query: 360 KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGID 419
           +LG  L  AA  G    ++ L+E GA +N  D  G T LH A+  G  EVV++L+ +G D
Sbjct: 3   ELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD 62
Query: 420 VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
            +AKD DG T LH A E+GH +V +LL+ +GAD  A+ S   +P+ +A    +  + ++L
Sbjct: 63  PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 480 MHGGA---TKDGIQQTNLRQVSIQFGNGKV 506
           +  GA   T D   +T L  ++ + GN +V
Sbjct: 123 LSQGADPNTSDSDGRTPL-DLAREHGNEEV 151

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 85/146 (58%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +N  D  G T LH A++ G  E+V +L+  G DV
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +A+D DG+T LH A ++GH ++ E+L+K GADV A+ +  ++P+ +A    +  I  +L+
Sbjct: 74  NARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
             GA    +D   +T    +SI  GN
Sbjct: 134 KHGADVNAQDKFGKTAF-DISIDNGN 158

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA  N  D +G T LH A+  G +E+V +L+  G DV
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV 61
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +A D +G T LH A   GH ++ E+L+K GADV A+ +  ++P+ +A    +  I  +L+
Sbjct: 62  NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
             GA    +D   +T    +SI  GN
Sbjct: 122 KHGADVNAQDKFGKTAF-DISIDIGN 146

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +N  D  G+T LH A+  G +E+V +L+  G DV
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +A D  G T LH A  +GH ++ E+L+K GADV A  +   +P+ +A    +  I  +L+
Sbjct: 74  NASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
             GA    +D   +T    +SI  GN
Sbjct: 134 KHGADVNAQDKFGKTAF-DISIDNGN 158

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/146 (37%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ LI  GA +N  D  G T LH A+  G +E+V +L+  G DV
Sbjct: 14  LGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           DA D  G+T LH A  +GH ++ E+L+K GADV A      +P+ +A    +  I  +L+
Sbjct: 74  DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
             GA    +D   +T    +SI  GN
Sbjct: 134 KYGADVNAQDKFGKTAF-DISIDNGN 158

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +N +D  G T LH A+ KG +E+V +L+  G DV
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +A D+ G T LH A   GH ++ E+L+K GADV A  +   +P+ +A    +  I  +L+
Sbjct: 74  NAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
             GA    +D   +T    +SI  GN
Sbjct: 134 KYGADVNAQDKFGKTAF-DISIDNGN 158

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 50/144 (34%), Positives = 77/144 (53%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +N  D  G T LH A+  G +E+V +L+  G DV
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +A D  G T LH A ++GH ++ E+L+K GADV A+  +  +P+ +A    +  I  +L+
Sbjct: 74  NAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133
Query: 481 HGGATKDGIQQTNLRQVSIQFGNG 504
             GA  +   +       I   NG
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNG 157

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 62/87 (71%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
           L +AAR G +  ++ L+EAGA +N KD +G T LH A+  G +EVV++L++ G DV+AKD
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGA 451
           ++G T LH A  +GH +V +LL++ GA
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 59/91 (64%)
Query: 394 GWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADV 453
           G T LH A+  G +EVV++L++ G DV+AKD++G T LH A  +GH +V +LL++ GADV
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 454 EARTSKNVSPMQIAECLHYAGISRILMHGGA 484
            A+     +P+ +A    +  + ++L+  GA
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 113/240 (47%), Gaps = 20/240 (8%)
Query: 242 GPIHLAL--RGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGA-- 297
           G + LA    G   EVL+LL  +GA++N    DG TALH A              NGA  
Sbjct: 41  GAVFLAACSSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99
Query: 298 -RPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLF 356
            +PD     +G  PLH  AS GY  + + L+ +GA+    N  G T  D+A E     L 
Sbjct: 100 NQPD----NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155
Query: 357 -DALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLH-------GWTALHRASFKGKIE 408
            + +        AARK E R M R  +A   +N   ++       G TALH A+ KG  E
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLR--DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE 213
Query: 409 VVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE 468
           V+++LI    DV+ KD DG+T LH A   G  +   +LV+   D+EA      +   +A+
Sbjct: 214 VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 401 ASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKN 460
           A   G  E V  L+++G D++  + DG TALH A    + D+ + LV+ GA++    ++ 
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 461 VSPMQIAECLHYAGISRILMHGGA 484
             P+  A    Y  I+  L+  GA
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGA 130

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +N +D +G T LH A+  G +E+V +L+  G DV
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +A D  G T LH A + GH ++ E+L+K GADV A  +   +P+ +A    +  I  +L+
Sbjct: 74  NALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
             GA    +D   +T    +SI  GN
Sbjct: 134 KYGADVNAQDKFGKTAF-DISIDNGN 158

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 21/142 (14%)
Query: 315 ASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEV 374
           A  G +  V++L+  GA+    +  G T   +    GH                     +
Sbjct: 22  ARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGH---------------------L 60
Query: 375 RTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCA 434
             ++ L++  A +N  D  GWT LH A+++G +E+V +L+  G DV+A D  GYT LH A
Sbjct: 61  EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLA 120
Query: 435 VESGHTDVTELLVKKGADVEAR 456
            E GH ++ E+L+K GADV A+
Sbjct: 121 AEDGHLEIVEVLLKYGADVNAQ 142

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +N  D  G T LH     G +E++ +L+    DV
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +A D+ G+T LH A   GH ++ E+L+K GADV A   +  +P+ +A    +  I  +L+
Sbjct: 74  NASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
             GA    +D   +T    +SI  GN
Sbjct: 134 KYGADVNAQDKFGKTAF-DISIDNGN 158

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 79/132 (59%), Gaps = 5/132 (3%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
           A    ++ S   P+HLA   GHLE++++LL  GA+VNA+   G+T LHLA          
Sbjct: 38  ADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVE 97
Query: 291 XXXXNGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAA 348
               +GA     NA D  GDTPLH+ A +G+ ++V++LL+ GA+   ++K GKTA+D++ 
Sbjct: 98  VLLKHGADV---NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 349 ECGHSRLFDALK 360
           + G+  L + L+
Sbjct: 155 DNGNEDLAEILQ 166

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +N  D  G T LH A+  G +E+V +L+  G DV
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +A D  G T LH A   GH ++ E+L+K GADV A  +   +P+ +A  + +  I  +L+
Sbjct: 74  NAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
             GA    +D   +T    +SI  GN
Sbjct: 134 KHGADVNAQDKFGKTAF-DISIDNGN 158

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 125/271 (46%), Gaps = 14/271 (5%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
           P+HLA     + +++LLL  GA+V+A  K G   LH A              +GA     
Sbjct: 61  PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA---CV 117
Query: 303 NARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECG-HSRLFDAL 359
           NA D    TPLH  AS    ++  LLL  GA+  + N  GK+A D+A       RL    
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177
Query: 360 KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGW-TALHRAS---FKGKIEVVRMLID 415
           K G SL  AAR+ ++  +++ + A   IN K      TALH A       + +V  +L+ 
Sbjct: 178 K-GHSLLQAAREADLAKVKKTL-ALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR 235
Query: 416 KGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGI 475
           KG +V+ K++D  T LH A E  H DV E+L K GA + A  S   + +  A    +   
Sbjct: 236 KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQT 295
Query: 476 SRILMHGGATKDGIQQTNLRQVSIQFGNGKV 506
            R+L+  G+    I        + Q GN  V
Sbjct: 296 CRLLLSYGSDPSIISLQGF--TAAQMGNEAV 324

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
Query: 340 GKTAYDVAAECGHSRLFDALKLGDSLCVAARKG-EVRTMQRLIEAGAAINGKDLHGWTAL 398
           GK+A D+A     + L    K  D L  AAR G E + M  L       +  D    T L
Sbjct: 4   GKSALDLADPSAKAVLTGEYK-KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPL 62
Query: 399 HRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTS 458
           H A+   ++ +V++L+  G DV AKD+ G   LH A   GH +VTELL+K GA V A   
Sbjct: 63  HLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL 122
Query: 459 KNVSPMQIAECLHYAGISRILMHGGA 484
              +P+  A   +   +  +L+  GA
Sbjct: 123 WQFTPLHEAASKNRVEVCSLLLSHGA 148

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 79/132 (59%), Gaps = 5/132 (3%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
           A    ++ S   P+HLA   GHLE++++LL  GA+VNA+   G+T LHLA          
Sbjct: 38  ADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVE 97
Query: 291 XXXXNGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAA 348
               +GA     NA D  GDTPLH+ A +G+ ++V++LL+ GA+   ++K GKTA+D++ 
Sbjct: 98  VLLKHGADV---NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 349 ECGHSRLFDALK 360
           + G+  L + L+
Sbjct: 155 DNGNEDLAEILQ 166

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +N  D  G T LH A+  G +E+V +L+  G DV
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +A D  G T LH A   GH ++ E+L+K GADV A  +   +P+ +A  + +  I  +L+
Sbjct: 74  NAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
             GA    +D   +T    +SI  GN
Sbjct: 134 KHGADVNAQDKFGKTAF-DISIDNGN 158

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 73/145 (50%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AA  G+   ++ L+  GA +N  D +G T LH A+  G++E+V +L+  G DV
Sbjct: 6   LGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV 65
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
           +A D  G T LH A   GH ++ E+L+K GADV A      +P+ +A       I  +L+
Sbjct: 66  NASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLL 125
Query: 481 HGGATKDGIQQTNLRQVSIQFGNGK 505
             GA  +      L    I    G+
Sbjct: 126 KHGADVNAQDALGLTAFDISINQGQ 150

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 145/366 (39%), Gaps = 88/366 (24%)
Query: 128 SGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPD 187
           SG +     + +L+  V++ ++D ++++LE      N     +  G T LH A+   R D
Sbjct: 17  SGRRAAVEDNHLLIKAVQNEDVDLVQQLLE---GGANVNFQEEEGGWTPLHNAVQMSRED 73
Query: 188 IVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLA 247
           IV+LLL  G D   + + G +                                  P  LA
Sbjct: 74  IVELLLRHGADPVLRKKNGAT----------------------------------PFILA 99
Query: 248 LRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDG 307
              G +++LKL L KGA+VN     G TA   A                           
Sbjct: 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA--------------------------- 132
Query: 308 DTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCV 367
                  A  G  + +K L ++GAN  +R K+ K   +   + G + L D          
Sbjct: 133 -------AVYGKVKALKFLYKRGANVNLRRKT-KEDQERLRKGGATALMD---------- 174
Query: 368 AARKGEVRTMQRLI-EAGAAINGKDLHGWTALHRA---SFKGKIE-VVRMLIDKGIDVDA 422
           AA KG V  ++ L+ E GA +N  D  G  AL  A   S    +E +  +L+D G DV+ 
Sbjct: 175 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 234
Query: 423 KDEDGYTALHCAVESGHTD-VTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMH 481
           + E G T L  AVE  H   V  LL ++  ++    S   + + +A  L    I+ +L  
Sbjct: 235 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 294
Query: 482 GGATKD 487
            GA+ D
Sbjct: 295 RGASTD 300

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 137/352 (38%), Gaps = 85/352 (24%)
Query: 142 LLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVES 201
           LL+K  + +D+  V +  +   N     +  G T LH A+   R DIV+LLL  G D   
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 202 QGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLI 261
           + + G +                                  P  LA   G +++LKL L 
Sbjct: 68  RKKNGAT----------------------------------PFLLAAIAGSVKLLKLFLS 93
Query: 262 KGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQ 321
           KGA+VN     G TA   A                                  A  G  +
Sbjct: 94  KGADVNECDFYGFTAFMEA----------------------------------AVYGKVK 119
Query: 322 MVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLI 381
            +K L ++GAN  +R K+ K   +   + G + L D          AA KG V  ++ L+
Sbjct: 120 ALKFLYKRGANVNLRRKT-KEDQERLRKGGATALMD----------AAEKGHVEVLKILL 168
Query: 382 -EAGAAINGKDLHGWTALHRA---SFKGKIE-VVRMLIDKGIDVDAKDEDGYTALHCAVE 436
            E GA +N  D  G  AL  A   S    +E +  +L+D G DV+ + E G T L  AVE
Sbjct: 169 DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228
Query: 437 SGHTD-VTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKD 487
             H   V  LL ++  ++    S   + + +A  L    I+ +L   GA+ D
Sbjct: 229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 55/239 (23%)
Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXX 289
           K+   R++  +   +H A   GH E+++ LL  G  VN    D + A             
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN----DKDDA------------- 72
Query: 290 XXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAE 349
                            G +PLHI AS G +++VK LL KGA     N++G T    AA 
Sbjct: 73  -----------------GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA- 114
Query: 350 CGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEV 409
                             +  + E+  M  L+E GA  + KD +  TA+HRA+ KG +++
Sbjct: 115 ------------------SKNRHEIAVM--LLEGGANPDAKDHYEATAMHRAAAKGNLKM 154
Query: 410 VRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE 468
           + +L+      + +D +G T LH A +    +  +LLV +GA +     +  +P+Q+A+
Sbjct: 155 IHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 213

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGK-DLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
           +C  A  G++  ++  I A  ++  + D    TALH A   G  E+V  L+  G+ V+ K
Sbjct: 10  VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69
Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG 483
           D+ G++ LH A  +G  ++ + L+ KGA V A      +P+  A   +   I+ +L+ GG
Sbjct: 70  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 484 ATKD 487
           A  D
Sbjct: 130 ANPD 133

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 55/239 (23%)
Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXX 289
           K+   R++  +   +H A   GH E+++ LL  G  VN    D + A             
Sbjct: 31  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN----DKDDA------------- 73
Query: 290 XXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAE 349
                            G +PLHI AS G +++VK LL KGA     N++G T    AA 
Sbjct: 74  -----------------GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA- 115
Query: 350 CGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEV 409
                             +  + E+  M  L+E GA  + KD +  TA+HRA+ KG +++
Sbjct: 116 ------------------SKNRHEIAVM--LLEGGANPDAKDHYEATAMHRAAAKGNLKM 155
Query: 410 VRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE 468
           + +L+      + +D +G T LH A +    +  +LLV +GA +     +  +P+Q+A+
Sbjct: 156 IHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 214

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGK-DLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
           +C  A  G++  ++  I A  ++  + D    TALH A   G  E+V  L+  G+ V+ K
Sbjct: 11  VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 70
Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG 483
           D+ G++ LH A  +G  ++ + L+ KGA V A      +P+  A   +   I+ +L+ GG
Sbjct: 71  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 130
Query: 484 ATKD 487
           A  D
Sbjct: 131 ANPD 134

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/96 (42%), Positives = 60/96 (62%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +N KD +G T L+ A+  G +E+V +L+  G DV
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
           +A D  G+T LH A   GH ++ E+L+K GADV A+
Sbjct: 74  NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 59/107 (55%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
           L  A+  G+ + VR+L+  G DV+AKDE G T L+ A   GH ++ E+L+K GADV A  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 458 SKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNG 504
           +   +P+ +A  + +  I+ +L+  GA  +   +       I  GNG
Sbjct: 78  AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG 124

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 55/239 (23%)
Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXX 289
           K+   R++  +   +H A   GH E+++ LL  G  VN    D + A             
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN----DKDDA------------- 72
Query: 290 XXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAE 349
                            G +PLHI AS G +++VK LL KGA+    N++G T    AA 
Sbjct: 73  -----------------GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA- 114
Query: 350 CGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEV 409
                             +  + E+  M  L+E GA  + KD +  TA+HRA+ KG +++
Sbjct: 115 ------------------SKNRHEIAVM--LLEGGANPDAKDHYDATAMHRAAAKGNLKM 154
Query: 410 VRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE 468
           V +L+      + +D +G T LH A +    +  + LV +GA +     +  +P+Q+A+
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGK-DLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
           +C  A  G++  ++  I A  ++  + D    TALH A   G  E+V  L+  G+ V+ K
Sbjct: 10  ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69
Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG 483
           D+ G++ LH A  +G  ++ + L+ KGA V A      +P+  A   +   I+ +L+ GG
Sbjct: 70  DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 484 ATKDG 488
           A  D 
Sbjct: 130 ANPDA 134

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 55/239 (23%)
Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXX 289
           K+   R++  +   +H A   GH E+++ LL  G  VN    D + A             
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN----DKDDA------------- 72
Query: 290 XXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAE 349
                            G +PLHI AS G +++VK LL KGA+    N++G T    AA 
Sbjct: 73  -----------------GWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAA- 114
Query: 350 CGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEV 409
                             +  + E+  M  L+E GA  + KD +  TA+HRA+ KG +++
Sbjct: 115 ------------------SKNRHEIAVM--LLEGGANPDAKDHYDATAMHRAAAKGNLKM 154
Query: 410 VRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE 468
           V +L+      + +D +G T LH A +    +  + LV +GA +     +  +P+Q+A+
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGK-DLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
           +C  A  G++  ++  I A  ++  + D    TALH A   G  E+V  L+  G+ V+ K
Sbjct: 10  ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69
Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG 483
           D+ G++ LH A  +G  ++ + L+ KGA V A      +P+  A   +   I+ +L+ GG
Sbjct: 70  DDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 484 ATKDG 488
           A  D 
Sbjct: 130 ANPDA 134

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 23/227 (10%)
Query: 242 GPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDI 301
            P+H A   GH+++  +L+  GAN++  ++D  T L  A E             GA  D 
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 302 RNARDGDTPLHITASLGYEQMVKLLLQKGA-NKYIRNKSGKTAYDVAAECGHSRLFDALK 360
           ++A +G T LH+ A  G+ ++V+ LL  G  +   ++  G T    A E  H    D +K
Sbjct: 73  KDA-EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH---VDLVK 128
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           L                  L+  G+ IN +D      LH A+F G +++  +L+    D+
Sbjct: 129 L------------------LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
            A +  G + LH A      D   L + + +DV  +  +  +P+Q A
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
           AA  G V     L++AGA I+       T L  A+    +E V+ LI  G  VD KD +G
Sbjct: 18  AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77
Query: 428 YTALHCAVESGHTDVTELLVKKGA-DVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
            T LH A + GH +V + L+  G  DV  +     +PM  A    +  + ++L+  G+
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 59/93 (63%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
           L  AA+ G    +++L+  GA +N +   G T LH A+  G  E+V++L+ KG DV+A+ 
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEART 457
           +DG T  H A ++GH ++ +LL  KGADV AR+
Sbjct: 73  KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
           +DG T LH A ++GH +  + L+ KGADV AR+    +P+ +A    +A I ++L+  GA
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 485 -----TKDG 488
                +KDG
Sbjct: 67  DVNARSKDG 75

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 21/165 (12%)
Query: 304 ARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGD 363
           ++DG +PLH+ A  G   ++ LLL+ GAN   RN        +A + GH   F  +K   
Sbjct: 83  SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGH---FQVVKC-- 137
Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
                           L+++ A  N KDL G T L  A   G  E+V +L+  G  ++A 
Sbjct: 138 ----------------LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINAS 181
Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE 468
           +  G TALH AV   H  V ELL+  GA V+    +  + +  AE
Sbjct: 182 NNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAE 226

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
           L VAA  G    +  L++ GA    ++      LH A  +G  +VV+ L+D     + KD
Sbjct: 90  LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD 149
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
             G T L  A   GH ++  LL++ GA + A  +K  + +  A    +  +  +L+  GA
Sbjct: 150 LSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGA 209
Query: 485 TKDGIQQTNLRQ 496
           +   +Q  N RQ
Sbjct: 210 S---VQVLNKRQ 218

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 57/96 (59%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +N  D  G T LH A+    +E+V +L+  G DV
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
           +A D DG T LH A   GH ++ E+L+K GADV A+
Sbjct: 74  NAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQ 109

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 400 RASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSK 459
            A+  G+ + VR+L+  G DV+A D  G T LH A +  H ++ E+L+K GADV A  + 
Sbjct: 20  EAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND 79
Query: 460 NVSPMQIAECLHYAGISRILMHGGA---TKDGIQQTNLRQVSIQFGN 503
             +P+ +A    +  I  +L+  GA    +D   +T    +SI  GN
Sbjct: 80  GSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAF-DISIDNGN 125

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 21/203 (10%)
Query: 269 LTKDGNTALHLAV--EXXXXXXXXXXXXNG--ARPDIRNARDGDTPLHITASLGYEQMVK 324
           LT+DG++ LHLA+  E             G  A  + +N     TPLH+       ++ +
Sbjct: 1   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQ-QTPLHLAVITNQPEIAE 59
Query: 325 LLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG 384
            LL  G +  +R+  G T   +A E G              C+A+  G +          
Sbjct: 60  ALLGAGCDPELRDFRGNTPLHLACEQG--------------CLAS-VGVLTQSCTTPHLH 104
Query: 385 AAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE-DGYTALHCAVESGHTDVT 443
           + +   + +G T LH AS  G + +V +L+  G DV+A++  +G TALH AV+  + D+ 
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 164
Query: 444 ELLVKKGADVEARTSKNVSPMQI 466
            LL+K GADV   T +  SP Q+
Sbjct: 165 SLLLKCGADVNRVTYQGYSPYQL 187

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 61/107 (57%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +N  D  G T LH A+  G +E+V +L+  G DV
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
           +A+D  G T LH A   GH ++ E+L+K GADV A+     +   I+
Sbjct: 74  NAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
           L  A+  G+ + VR+L+  G DV+A DEDG T LH A + GH ++ E+L+K GADV A  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 458 SKNVSPMQIAECLHYAGISRILMHGGA---TKDGIQQTNLRQVSIQFGN 503
           +  ++P+ +A    +  I  +L+  GA    +D   +T    +SI  GN
Sbjct: 78  NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAF-DISIDNGN 125

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 21/204 (10%)
Query: 269 LTKDGNTALHLAV--EXXXXXXXXXXXXNG--ARPDIRNARDGDTPLHITASLGYEQMVK 324
           LT+DG++ LHLA+  E             G  A  + +N     TPLH+       ++ +
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQ-QTPLHLAVITNQPEIAE 62
Query: 325 LLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG 384
            LL  G +  +R+  G T   +A E G              C+A+  G +          
Sbjct: 63  ALLGAGCDPELRDFRGNTPLHLACEQG--------------CLAS-VGVLTQSCTTPHLH 107
Query: 385 AAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE-DGYTALHCAVESGHTDVT 443
           + +   + +G T LH AS  G + +V +L+  G DV+A++  +G TALH AV+  + D+ 
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 167
Query: 444 ELLVKKGADVEARTSKNVSPMQIA 467
            LL+K GADV   T +  SP Q+ 
Sbjct: 168 SLLLKCGADVNRVTYQGYSPYQLT 191

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 56/96 (58%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +N +D  G T LH A+    +E+V +L+  G DV
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
           +A D  G T LH     GH ++ E+L+K GADV A+
Sbjct: 74  NAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQ 109

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
           L  A+  G+ + VR+L+  G DV+A+D+ G T LH A  + H ++ E+L+K GADV A  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 458 SKNVSPMQIAECLHYAGISRILMHGGA---TKDGIQQTNLRQVSIQFGN 503
           +   +P+ +     +  I  +L+  GA    +D   +T    +SI  GN
Sbjct: 78  AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAF-DISIDNGN 125

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 55/96 (57%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L   GA +N  D  G T LH A+  G +E+V +L+  G DV
Sbjct: 14  LGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
           +A    G T LH A  + H ++ E+L+K GADV A+
Sbjct: 74  NATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQ 109

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
           L  A+  G+ + VR+L   G DV+A D  G+T LH A   GH ++ E+L+K GADV A  
Sbjct: 18  LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 458 SKNVSPMQIAECLHYAGISRILMHGGA---TKDGIQQTNLRQVSIQFGN 503
           +   +P+ +A    +  I  +L+  GA    +D   +T    +SI  GN
Sbjct: 78  NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAF-DISIDNGN 125

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 57/96 (59%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  A R G+   ++ L+  GA +N  D  G T LH A+ +G +E+V +L+  G DV
Sbjct: 14  LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
           +A D  G T LH A   GH ++ E+L++ GADV A+
Sbjct: 74  NASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ 109

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
           L  A+  G+ + VR+L+  G DV+A D+ G T LH A + GH ++ E+L+K GADV A  
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 458 SKNVSPMQIAECLHYAGISRILMHGGA---TKDGIQQTNLRQVSIQFGN 503
           S   +P+ +A  + +  I  +L+  GA    +D   +T    +SI  GN
Sbjct: 78  SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF-DISIDNGN 125

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
           A R G  + +++L+  GA+VNA+   G T LHLA +            +GA  D+ NARD
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA--DV-NARD 77
Query: 307 --GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
             G TPLH+ A++G+ ++V++LL+ GA+   ++K GKTA+D++ + G+  L + L+
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 61/107 (57%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  A R G+   ++ L+  GA +N  D  G T LH A+ +G +E+V +L+  G DV
Sbjct: 14  LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
           +A+D  G T LH A   GH ++ E+L++ GADV A+     +   I+
Sbjct: 74  NARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
           L  A+  G+ + VR+L+  G DV+A D+ G T LH A + GH ++ E+L+K GADV AR 
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 458 SKNVSPMQIAECLHYAGISRILMHGGA---TKDGIQQTNLRQVSIQFGN 503
               +P+ +A  + +  I  +L+  GA    +D   +T    +SI  GN
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF-DISIDNGN 125

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 57/96 (59%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  A R G+   ++ L+  GA +N  D  G T LH A+ +G +E+V +L+  G DV
Sbjct: 14  LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
           +A D  G T LH A   GH ++ E+L++ GADV A+
Sbjct: 74  NASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ 109

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
           L  A+  G+ + VR+L+  G DV+A D+ G T LH A + GH ++ E+L+K GADV A  
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 458 SKNVSPMQIAECLHYAGISRILMHGGA---TKDGIQQTNLRQVSIQFGN 503
               +P+ +A  + +  I  +L+  GA    +D   +T    +SI  GN
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF-DISIDNGN 125

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 57/88 (64%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +N KD  G+T LH A+ +G +E+V +L+  G DV
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVK 448
           +A+D+ G TA   ++++G+ D+ E+L K
Sbjct: 62  NAQDKFGKTAFDISIDNGNEDLAEILQK 89

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 26/230 (11%)
Query: 238 TSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGA 297
            S W P+H A   GH   L+ L+ +G  VN +T D  + LH A              +GA
Sbjct: 57  VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 116
Query: 298 RPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFD 357
           + +   A D  TPL      G    V LLLQ GA+  ++ +S                  
Sbjct: 117 QVNGVTA-DWHTPLFNACVSGSWDCVNLLLQHGAS--VQPES------------------ 155
Query: 358 ALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKG 417
              L   +  AAR+G V  +  LI  G  I+ K  H  T L+ A    +   V+ L++ G
Sbjct: 156 --DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 418 IDVD-AKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQI 466
            DV+  K +D  + LH  V +   ++  LL+  GAD +A+ ++   P+++
Sbjct: 214 ADVNQGKGQD--SPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL 261

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 53/116 (45%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
           AA  G   +++ LI  G A+N       + LH A   G +  V++L+  G  V+    D 
Sbjct: 66  AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 125
Query: 428 YTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG 483
           +T L  A  SG  D   LL++ GA V+  +       + A   H   ++ ++ +GG
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGG 181

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 97/229 (42%), Gaps = 26/229 (11%)
Query: 239 STWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGAR 298
           S W P+H A   GH   L+ L+ +G  VN +T D  + LH A              +GA+
Sbjct: 2   SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 299 PDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDA 358
            +   A D  TPL      G    V LLLQ GA+    +      ++             
Sbjct: 62  VNGVTA-DWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHE------------- 107
Query: 359 LKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGI 418
                    AAR+G V  +  LI  G  I+ K  H  T L+ A    +   V+ L++ G 
Sbjct: 108 ---------AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 158
Query: 419 DVD-AKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQI 466
           DV+  K +D  + LH    +   ++  LL+  GAD +A+ ++   P+++
Sbjct: 159 DVNQGKGQD--SPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVEL 205

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 53/116 (45%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
           AA  G   +++ LI  G A+N       + LH A   G +  V++L+  G  V+    D 
Sbjct: 10  AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 69
Query: 428 YTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG 483
           +T L  A  SG  D   LL++ GA V+  +       + A   H   ++ ++ +GG
Sbjct: 70  HTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGG 125

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHG--WTALHRASFKGKIEVVRMLIDKGIDVDA 422
           L  AA+ G+V T+++L     ++N +D+ G   T LH A+   ++ VV  L+  G DV A
Sbjct: 12  LLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHG 482
           KD+ G   LH A   GH +V ELLVK GA V        +P+  A       I ++L+  
Sbjct: 71  KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130
Query: 483 GA 484
           GA
Sbjct: 131 GA 132

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHG--WTALHRASFKGKIEVVRMLIDKGIDVDA 422
           L  AA+ G+V T+++L     ++N +D+ G   T LH A+   ++ VV  L+  G DV A
Sbjct: 14  LLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHG 482
           KD+ G   LH A   GH +V ELLVK GA V        +P+  A       I ++L+  
Sbjct: 73  KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 132
Query: 483 GA 484
           GA
Sbjct: 133 GA 134

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 359 LKLGDS-----LCVAARKGEVRTMQRLIEAGAAINGKDLHG--WTALHRASFKGKIEVVR 411
           + LG+S     L  AA+ G+V T+++L     ++N +D+ G   T LH A+   ++ VV 
Sbjct: 5   ISLGNSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVE 63
Query: 412 MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH 471
            L+  G DV AKD+ G   LH A   GH +V ELLVK GA V        +P+  A    
Sbjct: 64  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 123
Query: 472 YAGISRILMHGGA 484
              I ++L+  GA
Sbjct: 124 KYEICKLLLQHGA 136

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 361 LGDS-LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGID 419
           LG S L +AA+ G   T + L+ AG + + +     T LH A+ +G   +V +L+  G D
Sbjct: 33  LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 420 VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
           V+AKD    TALH A E  H +V ELL+K GADV  ++
Sbjct: 93  VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 358 ALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKG 417
           AL L  SL     +GE   +QR+I      +  +  G TALH A   G  E+V+ L+  G
Sbjct: 39  ALLLDSSL-----EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG 93
Query: 418 IDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
           ++V+A D DG+T LHCA    +  V + LV+ GA V A T    S MQ A
Sbjct: 94  VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT---YSDMQTA 140

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 401 ASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKN 460
           +S +G+ ++V+ +I +  D    +++G TALH AV +GHT++ + LV+ G +V A  S  
Sbjct: 44  SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 461 VSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNGKVGRDQM-EGKFGMKK 519
            +P+  A   +   + + L+  GA    +  ++++  + +    + G  Q  +  +G+++
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163
Query: 520 K 520
           K
Sbjct: 164 K 164

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 54/104 (51%)
Query: 394 GWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADV 453
           G T LH AS KG I  V  L+  G D + KD  G+T LH A   GH  V ELL++  A V
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 454 EARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQV 497
                +N SP+  A    +  I ++L+  GA+++ +    LR V
Sbjct: 70  NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 356 FDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLID 415
           F+ L L   L  ++ +GE   +QR+I      +  +  G TALH A   G  E+V+ L+ 
Sbjct: 35  FNPLAL---LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ 91
Query: 416 KGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
            G++V+A D DG+T LHCA    +  V + LV+ GA V A T    S MQ A
Sbjct: 92  FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT---YSDMQTA 140

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 401 ASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKN 460
           +S +G+ ++V+ +I +  D    +++G TALH AV +GHT++ + LV+ G +V A  S  
Sbjct: 44  SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 461 VSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNGKVGRDQM-EGKFGMKK 519
            +P+  A   +   + + L+  GA    +  ++++  + +    + G  Q  +  +G+++
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163
Query: 520 K 520
           K
Sbjct: 164 K 164

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 56/86 (65%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +  KD +G T LH A+  G +EVV++L++ G DV
Sbjct: 6   LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 65
Query: 421 DAKDEDGYTALHCAVESGHTDVTELL 446
           +A+D+ G TA   ++++G+ D+ E+L
Sbjct: 66  NAQDKFGKTAFDISIDNGNEDLAEIL 91

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 97/223 (43%), Gaps = 32/223 (14%)
Query: 271 KDGNTALHLAVEX----XXXXXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLL 326
           +DG+T LH+AV                  G   DI N     TPLH+        +V+LL
Sbjct: 7   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR-QTPLHLAVITTLPSVVRLL 65
Query: 327 LQKGANKYIRNKSGKTAYDVAAECGH---------------------SRLFDALKLGDSL 365
           +  GA+    ++ G+TA  +A  C H                     +R +D L    +L
Sbjct: 66  VTAGASPMALDRHGQTAAHLA--CEHRSPTCLRALLDSAAPGTLDLEARNYDGLT---AL 120
Query: 366 CVAARKGEVRTMQRLIEAGAAINGKDL-HGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
            VA       T+Q L+E GA I+  D+  G + L  A     + +V++L+  G +V+A+ 
Sbjct: 121 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM 180
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
             G +ALH A   G   +   LV+ GAD   +   N +P+ +A
Sbjct: 181 YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 55/86 (63%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           LG  L  AAR G+   ++ L+  GA +  KD +G T LH A+  G +EVV++L++ G DV
Sbjct: 24  LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Query: 421 DAKDEDGYTALHCAVESGHTDVTELL 446
            A+D+ G TA   ++++G+ D+ E+L
Sbjct: 84  XAQDKFGKTAFDISIDNGNEDLAEIL 109

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 105/238 (44%), Gaps = 24/238 (10%)
Query: 233 TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXX 292
           T   + STW  +  A + G  E  + L+  G +V    K+  T LH A            
Sbjct: 3   THIDDYSTWDIVK-ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 293 XXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
              GA  D        TPLH     G+  MV  L++ GA+  + +  G +   +AA+ GH
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121
Query: 353 SRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKG-KIEVVR 411
           + +                     +  LI  G  ++  D +G T L  A+++   ++  R
Sbjct: 122 TSI---------------------VAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160
Query: 412 MLIDKGIDVDAKDE-DGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE 468
           +L+   + V+  D+    TALH AV +G+T V  LL++ GA+V+A+  K  S + +A+
Sbjct: 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDED- 426
           A + G     + L+EAG  +   D    T LH A+   +I++V+  I KG  VD    D 
Sbjct: 16  ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75
Query: 427 GYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATK 486
             T LH A   GH  +   L+K GAD      +  S + +A    +  I   L+  G   
Sbjct: 76  NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 487 DGIQQTNL 494
           D + Q  +
Sbjct: 136 DMMDQNGM 143

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 19/186 (10%)
Query: 301 IRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRN---KSGKTAYDVAAECGHSRLFD 357
           ++  +DG  PLH + S    ++   LL K  N  + +    SG T + +A   G+  +  
Sbjct: 30  LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVK 89
Query: 358 AL----------KLGDS----LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASF 403
           +L          K+ +     L +A  K      Q LIE GA++  KD      LHRA+ 
Sbjct: 90  SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149
Query: 404 KGKIEVVRMLIDKGID-VDAKDEDGYTALHCAVESGHTDVTELLVKK-GADVEARTSKNV 461
            G ++++ +L   G   V+ +D+ G+T L  A+  GH D   LLV+K GA+ +   +K  
Sbjct: 150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA 209
Query: 462 SPMQIA 467
               +A
Sbjct: 210 KAEDVA 215

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 19/186 (10%)
Query: 301 IRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRN---KSGKTAYDVAAECGHSRLFD 357
           ++  +DG  PLH + S    ++   LL K  N  + +    SG T + +A   G+  +  
Sbjct: 30  LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVK 89
Query: 358 AL----------KLGDS----LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASF 403
           +L          K+ +     L +A  K      Q LIE GA++  KD      LHRA+ 
Sbjct: 90  SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149
Query: 404 KGKIEVVRMLIDKGID-VDAKDEDGYTALHCAVESGHTDVTELLVKK-GADVEARTSKNV 461
            G ++++ +L   G   V+ +D+ G+T L  A+  GH D   LLV+K GA+ +   +K  
Sbjct: 150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA 209
Query: 462 SPMQIA 467
               +A
Sbjct: 210 KAEDVA 215

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 19/186 (10%)
Query: 301 IRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRN---KSGKTAYDVAAECGHSRLFD 357
           ++  +DG  PLH + S    ++   LL K  N  + +    SG T + +A   G+  +  
Sbjct: 30  LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVK 89
Query: 358 AL----------KLGDS----LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASF 403
           +L          K+ +     L +A  K      Q LIE GA++  KD      LHRA+ 
Sbjct: 90  SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149
Query: 404 KGKIEVVRMLIDKGID-VDAKDEDGYTALHCAVESGHTDVTELLVKK-GADVEARTSKNV 461
            G ++++ +L   G   V+ +D+ G+T L  A+  GH D   LLV+K GA+ +   +K  
Sbjct: 150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA 209
Query: 462 SPMQIA 467
               +A
Sbjct: 210 KAEDVA 215

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 60/115 (52%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
           L  A+  GE+ T++ L+E GA  +       +AL  AS  G  ++V +L+++ +D++  D
Sbjct: 40  LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
            +G T L  AV   H    E L+ +GAD+        +PM +A  L Y  + +++
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 60/115 (52%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
           L  A+  GE+ T++ L+E GA  +       +AL  AS  G  ++V +L+++ +D++  D
Sbjct: 40  LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
            +G T L  AV   H    E L+ +GAD+        +PM +A  L Y  + +++
Sbjct: 100 WNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 100/234 (42%), Gaps = 29/234 (12%)
Query: 257 KLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITAS 316
           K  +  GA+VNA   D NT L LAV              GA P I N  +        A+
Sbjct: 150 KECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAAN 209
Query: 317 LGYEQMVKLLLQKGANKYIR--NKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEV 374
             +   V  L        I   +++G TA  + A   H+   D               +V
Sbjct: 210 RDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVA---HNEGRD---------------QV 251
Query: 375 RTMQRLIEAGAAI--------NGKDLHGWTALHRASFKGKIEVVRMLI-DKGIDVDAKDE 425
            + + L+E GA +        + +   G TALH A+      +V+ L+ +KG + D +DE
Sbjct: 252 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDE 311
Query: 426 DGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
           DG T +  A + G  +V   L+++GA VEA  + + +  Q+A+  ++  I  I 
Sbjct: 312 DGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 365 LCVAARKGEVRTMQRLIEAGA--AINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
           L  AA  G++  ++ L++ GA   + GK     +AL  A  KG  ++V+ML+D G+DV+ 
Sbjct: 38  LMWAAAHGQIAVVEFLLQNGADPQLLGKGRE--SALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
            D +G T L  AV   H    ++L++ GAD    T    + M +A  L Y  + +++
Sbjct: 96  YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 152

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 365 LCVAARKGEVRTMQRLIEAGA--AINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
           L  AA  G++  ++ L++ GA   + GK     +AL  A  KG  ++V+ML+D G+DV+ 
Sbjct: 56  LMWAAAHGQIAVVEFLLQNGADPQLLGKGRE--SALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
            D +G T L  AV   H    ++L++ GAD    T    + M +A  L Y  + +++
Sbjct: 114 YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 170

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 77/192 (40%), Gaps = 1/192 (0%)
Query: 170 DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXR 229
           D  G T LH+A A  R D  + LLE   D   Q   G +                    R
Sbjct: 54  DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXX 289
               +        P+ LA R     +L+ L+   A+VNA+   G +ALH A         
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 290 XXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAE 349
                NGA  D++N R+ +TPL + A  G  +  K+LL   AN+ I +   +   D+A E
Sbjct: 174 VVLLKNGANKDMQNNRE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232
Query: 350 CGHSRLFDALKL 361
             H  +   L L
Sbjct: 233 RMHHDIVRLLDL 244

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 380 LIEAGAAI-NGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESG 438
            I  GA++ N  D  G TALH A+   + +  + L++   D + +D  G T LH AV + 
Sbjct: 42  FIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101
Query: 439 HTDVTELLVK-KGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGI 489
              V ++L++ +  D++AR     +P+ +A  L   G+   L++  A  + +
Sbjct: 102 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 153

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 365 LCVAARKGEVRTMQRLIEAGA--AINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
           L  AA  G++  ++ L++ GA   + GK     +AL  A  KG  ++V+ML+D G+DV+ 
Sbjct: 40  LMWAAAHGQIAVVEFLLQNGADPQLLGKGRE--SALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
            D +G T L  AV   H    ++L++ GAD    T    + M +A  L Y  + +++
Sbjct: 98  YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 79/198 (39%), Gaps = 4/198 (2%)
Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXX 226
           +  D  G+T LH+A    R D  + LLE   D   Q   G +                  
Sbjct: 52  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 111
Query: 227 XXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXX 286
             R    +        P+ LA R     +L+ L+   A+VNA+   G +ALH A      
Sbjct: 112 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 171
Query: 287 XXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
                   NGA  D++N R+ +TPL + A  G  +  K+LL   AN+ I +   +   D+
Sbjct: 172 DAAVVLLKNGANKDMQNNRE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 230
Query: 347 AAECGHS---RLFDALKL 361
           A E  H    RL D   L
Sbjct: 231 AQERMHHDIVRLLDEYNL 248

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 13/188 (6%)
Query: 305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL----- 359
           R G+T LH+ A        K LL+  A+  I++  G+T    A       +F  L     
Sbjct: 56  RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 115
Query: 360 -----KLGDS---LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVR 411
                ++ D    L +AAR      ++ LI + A +N  D  G +ALH A+    ++   
Sbjct: 116 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 175
Query: 412 MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH 471
           +L+  G + D ++    T L  A   G  +  ++L+   A+ +     +  P  IA+   
Sbjct: 176 VLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 235
Query: 472 YAGISRIL 479
           +  I R+L
Sbjct: 236 HHDIVRLL 243

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI-DKGIDVDA 422
           +L +AAR       +RL+EA A  N +D  G T LH A       V ++LI ++  D+DA
Sbjct: 61  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 120
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHG 482
           +  DG T L  A       + E L+   ADV A      S +  A  ++    + +L+  
Sbjct: 121 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 180
Query: 483 GATKD 487
           GA KD
Sbjct: 181 GANKD 185

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 79/198 (39%), Gaps = 4/198 (2%)
Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXX 226
           +  D  G+T LH+A    R D  + LLE   D   Q   G +                  
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 227 XXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXX 286
             R    +        P+ LA R     +L+ L+   A+VNA+   G +ALH A      
Sbjct: 79  RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 138
Query: 287 XXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
                   NGA  D++N R+ +TPL + A  G  +  K+LL   AN+ I +   +   D+
Sbjct: 139 DAAVVLLKNGANKDMQNNRE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 197
Query: 347 AAECGHS---RLFDALKL 361
           A E  H    RL D   L
Sbjct: 198 AQERMHHDIVRLLDEYNL 215

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 13/188 (6%)
Query: 305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL----- 359
           R G+T LH+ A        K LL+  A+  I++  G+T    A       +F  L     
Sbjct: 23  RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82
Query: 360 -----KLGDS---LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVR 411
                ++ D    L +AAR      ++ LI + A +N  D  G +ALH A+    ++   
Sbjct: 83  TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 142
Query: 412 MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH 471
           +L+  G + D ++    T L  A   G  +  ++L+   A+ +     +  P  IA+   
Sbjct: 143 VLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 202
Query: 472 YAGISRIL 479
           +  I R+L
Sbjct: 203 HHDIVRLL 210

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI-DKGIDVDA 422
           +L +AAR       +RL+EA A  N +D  G T LH A       V ++LI ++  D+DA
Sbjct: 28  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 87
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHG 482
           +  DG T L  A       + E L+   ADV A      S +  A  ++    + +L+  
Sbjct: 88  RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 147
Query: 483 GATKD 487
           GA KD
Sbjct: 148 GANKD 152

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 77/192 (40%), Gaps = 1/192 (0%)
Query: 170 DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXR 229
           D  G+T LH+A    R D  + LLE   D   Q   G +                    R
Sbjct: 54  DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXX 289
               +        P+ LA R     +L+ L+   A+VNA+   G +ALH A         
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 290 XXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAE 349
                NGA  D++N R+ +TPL + A  G  +  K+LL   AN+ I +   +   D+A E
Sbjct: 174 VVLLKNGANKDMQNNRE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232
Query: 350 CGHSRLFDALKL 361
             H  +   L L
Sbjct: 233 RMHHDIVRLLDL 244

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 13/188 (6%)
Query: 305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL----- 359
           R G+T LH+ A        K LL+  A+  I++  G+T    A       +F  L     
Sbjct: 55  RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 360 -----KLGDS---LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVR 411
                ++ D    L +AAR      ++ LI + A +N  D  G +ALH A+    ++   
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 174
Query: 412 MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH 471
           +L+  G + D ++    T L  A   G  +  ++L+   A+ +     +  P  IA+   
Sbjct: 175 VLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 234
Query: 472 YAGISRIL 479
           +  I R+L
Sbjct: 235 HHDIVRLL 242

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI-DKGIDVDA 422
           +L +AAR       +RL+EA A  N +D  G T LH A       V ++LI ++  D+DA
Sbjct: 60  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHG 482
           +  DG T L  A       + E L+   ADV A      S +  A  ++    + +L+  
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179
Query: 483 GATKD 487
           GA KD
Sbjct: 180 GANKD 184

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 34/146 (23%)
Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLI--------------------------------- 381
           L + ++ GD L  AA +G+V+ ++RL+                                 
Sbjct: 2   LLEEVRAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELL 61
Query: 382 EAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTD 441
           + GA+ N +D  G + +H A+  G ++ +++L++ G DV+  D  G   +H AV+ GHT 
Sbjct: 62  KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA 121
Query: 442 VTELLVKKGADVEARTSKNVSPMQIA 467
           V   L  + +D+  R ++ ++P+++A
Sbjct: 122 VVSFLAAE-SDLHRRDARGLTPLELA 146

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 380 LIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGH 439
           L++ GA+ N +D  G + +H A+  G ++ +++L++ G DV+  D  G   +H AV+ GH
Sbjct: 54  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 440 TDVTELLVKKGADVEARTSKNVSPMQIA 467
           T V   L  + +D+  R ++ ++P+++A
Sbjct: 114 TAVVSFLAAE-SDLHRRDARGLTPLELA 140

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 34/148 (22%)
Query: 353 SRLFDALKLGDSLCVAARKGEVRTMQRLI------------------------------- 381
           S L + + +GD L  AA +G+V+ ++RL+                               
Sbjct: 2   SMLLEEVCVGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALE 61
Query: 382 --EAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGH 439
             + GA+ N +D  G + +H A+  G ++ +++L++ G DV+A D  G   +H A+  GH
Sbjct: 62  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 440 TDVTELLVKKGADVEARTSKNVSPMQIA 467
           + V   L  + +D+  R +  ++P+++A
Sbjct: 122 SSVVSFLAPE-SDLHHRDASGLTPLELA 148

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 99/247 (40%), Gaps = 29/247 (11%)
Query: 269 LTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD--GDTPLHITASLGYEQMVKLL 326
           +T+DG+TALHLAV               A  +  + ++  G T LH+ A LG    V+ L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 327 LQKGANKYIRNKSGKTAYDVAAE-----CG---------HSRLFDALKLGDSL-CV---- 367
              GA   +  + G TA  +A       C          H R      L  S  C     
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124
Query: 368 -------AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
                  +    E     R  +    +  ++  G T LH A      E+VR+L D G D+
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184
Query: 421 DAKDED-GYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
           +  +   G T LH AVE+    V ELL+K GAD  AR     +P+  A       ++R+L
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
Query: 480 MHGGATK 486
              GA +
Sbjct: 245 RAHGAPE 251

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 99/247 (40%), Gaps = 29/247 (11%)
Query: 269 LTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD--GDTPLHITASLGYEQMVKLL 326
           +T+DG+TALHLAV               A  +  + ++  G T LH+ A LG    V+ L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 327 LQKGANKYIRNKSGKTAYDVAAE-----CG---------HSRLFDALKLGDSL-CV---- 367
              GA   +  + G TA  +A       C          H R      L  S  C     
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124
Query: 368 -------AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
                  +    E     R  +    +  ++  G T LH A      E+VR+L D G D+
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184
Query: 421 DAKDED-GYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
           +  +   G T LH AVE+    V ELL+K GAD  AR     +P+  A       ++R+L
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
Query: 480 MHGGATK 486
              GA +
Sbjct: 245 RAHGAPE 251

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 380 LIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGH 439
           L++ GA+ N +D  G + +H A+  G ++ +++L++ G DV+A D  G   +H A+  GH
Sbjct: 60  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 440 TDVTELLVKKGADVEARTSKNVSPMQIA 467
           + V   L  + +D+  R +  ++P+++A
Sbjct: 120 SSVVSFLAPE-SDLHHRDASGLTPLELA 146

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDI- 301
           P+H A + G+L  L+  L     VN L K G+TAL+ A                 +P+I 
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLF---TQPNIE 132
Query: 302 --RNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLF 356
             +  + GDT LH  A  GY  +V+LLL KGA   +RN   K A+D A     + L 
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLL 189

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDK-GIDVDAKDED 426
           AA++G +  ++  ++    +NG D  G TAL+ A   G  ++V  L  +  I+++ +++ 
Sbjct: 80  AAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKL 139
Query: 427 GYTALHCAVESGHTDVTELLVKKGADVEART 457
           G TALH A   G+ D+ +LL+ KGA  + R 
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKGARTDLRN 170

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTE-LLVKKGADVEAR 456
           LH A+ +G +  +R  +D  + V+  D+ G TAL+ A   GH D+ E L  +   ++  +
Sbjct: 77  LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQ 136
Query: 457 TSKNVSPMQIAECLHYAGISRILMHGGATKD 487
                + +  A    YA I ++L+  GA  D
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGARTD 167

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 77/191 (40%), Gaps = 4/191 (2%)
Query: 170 DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXR 229
           D  G+T LH+A    R D  + LLE   D   Q   G +                    R
Sbjct: 19  DRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXX 289
               +        P+ LA R     +L+ L+   A+VNA+   G +ALH A         
Sbjct: 79  ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 138
Query: 290 XXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAE 349
                NGA  D++N ++ +TPL + A  G  +  K+LL   AN+ I +   +   D+A E
Sbjct: 139 VVLLKNGANKDMQNNKE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 197
Query: 350 CGHS---RLFD 357
             H    RL D
Sbjct: 198 RMHHDIVRLLD 208

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 13/188 (6%)
Query: 305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL----- 359
           R G+T LH+ A        K LL+  A+  I++  G+T    A       +F  L     
Sbjct: 20  RTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRA 79
Query: 360 -----KLGDS---LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVR 411
                ++ D    L +AAR      ++ LI + A +N  D  G +ALH A+    ++   
Sbjct: 80  TDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 139
Query: 412 MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH 471
           +L+  G + D ++    T L  A   G  +  ++L+   A+ +     +  P  IA+   
Sbjct: 140 VLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 199
Query: 472 YAGISRIL 479
           +  I R+L
Sbjct: 200 HHDIVRLL 207

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 21/187 (11%)
Query: 266 VNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITA--SLGYEQMV 323
           VN    +GNTALH +V             +G     +  R G +P+ +TA  +L  +  +
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 324 KLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEA 383
           + +LQ      I  K        A++ G + L           +A   G V  ++ L+  
Sbjct: 164 ETVLQLFRLGNINAK--------ASQAGQTALM----------LAVSHGRVDVVKALLAC 205
Query: 384 GAAINGKDLHGWTALHRASFKGKIEVVRMLID-KGIDVDAKDEDGYTALHCAVESGHTDV 442
            A +N +D  G TAL  A   G  E+  +L+     D+   D DG TAL  A+++G +++
Sbjct: 206 EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEI 265
Query: 443 TELLVKK 449
             +L  +
Sbjct: 266 ASMLYSR 272

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 99/231 (42%), Gaps = 30/231 (12%)
Query: 254 EVLKLLLIKGANVNA-LTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD--GDTP 310
           +V+  LL +GA +NA + K G T+LHLA               GA     N++D  G TP
Sbjct: 31  QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA---NSQDNTGRTP 87
Query: 311 LHITASLGYEQMVKLLLQ-KGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAA 369
           LH   +     + ++LL+ +  N   R   G T                      L +AA
Sbjct: 88  LHAAVAADAMGVFQILLRNRATNLNARMHDGTT---------------------PLILAA 126
Query: 370 RKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYT 429
           R      ++ LI A A IN  D  G TALH A+     E V +L+    + DA+D+   T
Sbjct: 127 RLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDET 186
Query: 430 ALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA-ECLHYAGISRIL 479
            L  A   G  + ++ L+   A+ E     +  P  +A E LH+  I R+L
Sbjct: 187 PLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHH-DIVRLL 236

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 82/163 (50%), Gaps = 21/163 (12%)
Query: 306 DGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKL---- 361
           +G+TPL+I       ++ K L+ +GA+  ++N    + Y  A   G + +  A  L    
Sbjct: 38  EGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEIL-AYMLKHAT 96
Query: 362 ----------GDSLCVAARKGEVRTMQRLIEAG-AAINGKDLHGWTAL-----HRASFKG 405
                     G++L  AA KG +  ++ L+E G   I+ ++  G+TAL      R   + 
Sbjct: 97  PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156
Query: 406 KIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVK 448
             ++V++L++ G D   KD  G TA+  A + G+T+++++L +
Sbjct: 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
           L VA   G    + +L+E    +  KD+ G TAL  A    ++ +   L+ KG +V+ KD
Sbjct: 39  LMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD 98
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
             G T L  ++  G+++++  L++ GA+V  R  +  +P+ +A     + I + L+  GA
Sbjct: 99  FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA 158

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 45/90 (50%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
           AA  GE+  +Q+ ++     +  +  G TALH A       +V  LI  G +V++ D  G
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 428 YTALHCAVESGHTDVTELLVKKGADVEART 457
           +T LHCA     T +   LV+ GA + A T
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAIFATT 117

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)
Query: 401 ASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKN 460
           A+  G++EVV+  + +  D    +E+G TALH A+   +  + + L+  GA+V +  S  
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 461 VSPMQIAECLHYAGISRILMHGGA 484
            +P+  A   +   I   L+  GA
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGA 111

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 387 INGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELL 446
           +N  D HG++ LH A  +G+  VV MLI +G  ++  +    T LH A   GH D+ + L
Sbjct: 32  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 91
Query: 447 VKKGADVEARTSKNVSPMQIAECLHYA 473
           ++  AD+ A       P      LHYA
Sbjct: 92  LQYKADINAVNEHGNVP------LHYA 112

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 387 INGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELL 446
           +N  D HG++ LH A  +G+  VV MLI +G  ++  +    T LH A   GH D+ + L
Sbjct: 27  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 86
Query: 447 VKKGADVEARTSKNVSPMQIAECLHYA 473
           ++  AD+ A       P      LHYA
Sbjct: 87  LQYKADINAVNEHGNVP------LHYA 107

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD-ED 426
           AARK + + + +L+E    ++  D +G TAL   +  G  + VR+L + G D+D +D   
Sbjct: 51  AARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 109
Query: 427 GYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
           G TALH A      +V E LV+ GAD+E    + ++ +++A
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 22/158 (13%)
Query: 365 LCVAARKGEVRTMQRLIE-AGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV--- 420
           L +AA++ +V+ + +L++  G  ++ +   G TALH A+    +E   +L++   ++   
Sbjct: 7   LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66
Query: 421 --DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNV-------------SPMQ 465
              ++  +G TALH AV + + ++   L+ +GA V AR + +V              P+ 
Sbjct: 67  PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126
Query: 466 IAECLHYAGISRILMHGGA---TKDGIQQTNLRQVSIQ 500
            A C+    I R+L+  GA    +D +  T L  + +Q
Sbjct: 127 FAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQ 164

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 345 DVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHG-WTALHRASF 403
           D   E G + L     LG   CV          + L EAGA ++ +D+ G  TALH A+ 
Sbjct: 71  DAVDENGRTALLFVAGLGSDKCV----------RLLAEAGADLDHRDMRGGLTALHMAAG 120
Query: 404 KGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSP 463
             + EVV  L++ G D++ +DE G TAL  A E   T      ++ G  +      NV  
Sbjct: 121 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLE 180
Query: 464 MQIAECLHYAGISRILMHGGATKD 487
            Q+ E   YA +  I+   G  KD
Sbjct: 181 GQVFE---YAEVDEIVEKRGKGKD 201

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 372 GEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTAL 431
           G     +RL+  GA  + KD  G+  +H A+  G+++ ++ L++   DV+ +D +G   L
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 432 HCAVESGHTDVTELLVKKGA-DVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
           H A + GH  V E LVK  A +V  R  K  +   +A       +  ++   GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
           A + G++  ++  +  G  +N     G   LH A+  G++E++  L+ KG D++A D+  
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 428 YTALHCAVESGHTDVTELLVKKGAD 452
            T L  AV  GH    +LL+ KGAD
Sbjct: 74  ITPLLSAVYEGHVSCVKLLLSKGAD 98

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 405 GKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPM 464
           G ++ V+  + KG DV+   E G   LH A + G  ++ E L+ KGAD+ A    +++P+
Sbjct: 18  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 465 QIAECLHYAGISRILMHGGATK 486
             A    +    ++L+  GA K
Sbjct: 78  LSAVYEGHVSCVKLLLSKGADK 99

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 51/98 (52%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
           A + G++  ++  +  G  +N     G   LH A+  G++E++  L+ KG D++A D+  
Sbjct: 9   ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 428 YTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQ 465
            T L  AV  GH    +LL+ KGAD   +    ++ ++
Sbjct: 69  ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 372 GEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTAL 431
           G     +RL+  GA  + KD  G+  +H A+  G ++ ++ L++   DV+ +D +G   L
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 432 HCAVESGHTDVTELLVKKGA-DVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
           H A + GH  V E LVK  A +V  R  K  +   +A       +  ++   GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 372 GEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTAL 431
           G     +RL+  GA  + KD  G+  +H A+  G ++ ++ L++   DV+ +D +G   L
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 432 HCAVESGHTDVTELLVKKGA-DVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
           H A + GH  V E LVK  A +V  R  K  +   +A       +  ++   GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 372 GEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTAL 431
           G     +RL+  GA  + KD  G+  +H A+  G ++ ++ L++   DV+ +D +G   L
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 432 HCAVESGHTDVTELLVKKGA-DVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
           H A + GH  V E LVK  A +V  R  K  +   +A       +  ++   GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 376 TMQRLIEAGAAIN----GKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTAL 431
           TM   +  GA +N    G+D    T L +A+    +     L+  G +V+  D  G   L
Sbjct: 215 TMADALAHGADVNWVNGGQD--NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPL 272
Query: 432 HCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
           H A   GHT +  L +K+GAD+ AR S+   P+ IA
Sbjct: 273 HHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 376 TMQRLIEAGAAIN----GKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTAL 431
           TM   +  GA +N    G+D    T L +A+    +     L+  G +V+  D  G   L
Sbjct: 215 TMADALAHGADVNWVNGGQD--NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPL 272
Query: 432 HCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
           H A   GHT +  L +K+GAD+ AR S+   P+ IA
Sbjct: 273 HHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 376 TMQRLIEAGAAIN----GKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTAL 431
           TM   +  GA +N    G+D    T L +A+    +     L+  G +V+  D  G   L
Sbjct: 215 TMADALAHGADVNWVNGGQD--NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPL 272
Query: 432 HCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
           H A   GHT +  L +K+GAD+ AR S+   P+ IA
Sbjct: 273 HHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 372 GEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTAL 431
           G     +RL+  GA  + KD  G   +H A+  G ++ ++ L++   DV+ +D +G   L
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 432 HCAVESGHTDVTELLVKKGA-DVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
           H A + GH  V E LVK  A +V  R  K  +   +A       +  ++   GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 18/235 (7%)
Query: 244 IHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRN 303
           IH+A R G  + ++ L+  G +     + G TALHLA +             G   ++ +
Sbjct: 24  IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG---EVHS 80
Query: 304 ARDGDTPLHITASLGYEQMVKLLLQKGANK------YIRNKSGKTAYDVAAECGHSRLFD 357
              G  P+H+        +V  L++    +       +     +   ++ +   H +   
Sbjct: 81  LWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQT 140
Query: 358 ALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLID-- 415
           AL      CV      +  ++ L++ GA+   KD    T L RA      E + +  D  
Sbjct: 141 AL----HWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTV 196
Query: 416 ---KGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
                + +D  ++ G + LH A+     DV    V+ G DV    +++  P+ ++
Sbjct: 197 PSKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLS 251

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
           P+ LA R     +L+ L+   A+VNA+   G +ALH A              NGA  D++
Sbjct: 18  PLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 77
Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHS---RLFD 357
           N ++ +TPL + A  G  +  K+LL   AN+ I +   +   D+A E  H    RL D
Sbjct: 78  NNKE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 134

>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range Protein K1 Reveal A Novel Ankyrin Repeat Interaction Surface For K1s Function Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
           A     VR +  L+ AGA  N   L     LH+A+     ++V++L+  G+D    D+ G
Sbjct: 38  AIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95
Query: 428 YTALHCAVESGHTDVTELLVKKG 450
            TAL+ AV+SG+    +L VKK 
Sbjct: 96  NTALYYAVDSGNXQTVKLFVKKN 118

>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structure Of The Cdk6-P16ink4a Tumor Suppressor Complex Length = 156

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
Query: 363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
           D L  AA +G V  ++ L+EAGA  N  + +G   + +    G   V  +L+  G + + 
Sbjct: 14  DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNC 72
Query: 423 KDEDGYT-ALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMH 481
            D    T  +H A   G  D   +L + GA ++ R +    P+ +AE L +  ++R L  
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR- 131
Query: 482 GGATKDGIQQTNLRQVSIQFG 502
             A   G + +N  ++    G
Sbjct: 132 --AAAGGTRGSNHARIDAAEG 150

>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20 Structures Length = 156

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Query: 363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
           D L  AA +G V  ++ L+EAGA  N  + +G   + +    G   V  +L+  G + + 
Sbjct: 14  DWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNC 72
Query: 423 KDEDGYT-ALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMH 481
            D    T  +H A   G  D   +L + GA ++ R +    P+ +AE L +  ++R L  
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR- 131
Query: 482 GGATKDGIQQTNLRQVSIQFGNGKV 506
             A   G + +N  ++    G   +
Sbjct: 132 --AAAGGTRGSNHARIDAAEGPSDI 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	541
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-91
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-86
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-82
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-81
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-63
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-49
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-86
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-80
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-61
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-55
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-85
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-64
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-60
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-56
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-28
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-79
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-73
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-53
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-43
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-42
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-78
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-74
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-65
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-78
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-52
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-77
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-71
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-62
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-76
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-75
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-72
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-68
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-56
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-41
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-26
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-76
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-70
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-57
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-40
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-74
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-73
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-59
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-28
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-72
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-65
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-48
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-27
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-15
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-72
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-66
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-65
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-72
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-67
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-54
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-71
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-70
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-54
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-35
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-67
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-55
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-54
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-66
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-61
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-42
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-65
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-62
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-59
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-45
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-63
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-55
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-51
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-40
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-63
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-55
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-44
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-36
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-34
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-10
2rfa_A	232	Transient receptor potential cation channel subfa	2e-59
2rfa_A	232	Transient receptor potential cation channel subfa	4e-50
2rfa_A	232	Transient receptor potential cation channel subfa	7e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-58
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-50
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-43
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-35
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-57
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-54
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-39
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-57
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-51
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-38
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-27
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-56
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-52
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-49
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-42
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-33
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-55
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-48
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-42
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-35
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-54
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-54
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-45
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-36
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-54
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-44
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-39
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-54
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-52
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-47
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-46
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-45
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-24
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-53
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-46
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-34
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-18
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-53
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-48
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-41
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-39
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-30
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-53
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-46
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-41
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-53
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-45
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-37
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-52
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-45
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-44
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-42
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-47
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-41
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-33
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-19
2etb_A	256	Transient receptor potential cation channel subfam	2e-47
2etb_A	256	Transient receptor potential cation channel subfam	2e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-47
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-38
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-32
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-29
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-46
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-45
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-35
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-34
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-45
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-37
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-36
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-04
2pnn_A	273	Transient receptor potential cation channel subfa	7e-45
2pnn_A	273	Transient receptor potential cation channel subfa	2e-42
2pnn_A	273	Transient receptor potential cation channel subfa	5e-30
2pnn_A	273	Transient receptor potential cation channel subfa	4e-25
2pnn_A	273	Transient receptor potential cation channel subfa	8e-24
2pnn_A	273	Transient receptor potential cation channel subfa	1e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-45
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-34
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-31
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-31
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-29
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-43
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-35
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-28
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-43
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-39
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-33
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-21
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-41
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-28
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-27
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-20
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-40
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-37
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-29
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-11
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-40
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-39
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-22
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-39
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-37
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-32
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-38
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-37
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-26
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-34
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-30
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-29
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-20
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-33
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-29
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-27
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-21
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-17
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-17
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-05
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	2e-17
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-17
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-17
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-16
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-16
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-08
2cri_A	147	Vesicle-associated membrane protein-associated pro	3e-17
1z9l_A	128	Vesicle-associated membrane protein-associated pro	7e-17
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-16
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-15
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-15
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-15
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-05
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	2e-13
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	3e-09
1row_A	109	SSP-19, MSP-domain protein like family member; bet	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  286 bits (734), Expect = 2e-91
 Identities = 105/318 (33%), Positives = 159/318 (50%), Gaps = 23/318 (7%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           + A   G T LHIA  +   + V  LLE         + G  TPL  AA  G+  + ELL
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF-TPLHVAAKYGKVRVAELL 165

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
           L R A    +  +   P+H+A+   +L+++KLLL +G + ++   +G T LH+A +  + 
Sbjct: 166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV 225

Query: 287 DCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
           + AR LL  G   +  +   G TPLH+ A  G+ +MV LLL K AN  + NKSG T    
Sbjct: 226 EVARSLLQYGGSANAES-VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP--- 281

Query: 347 AAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGK 406
                             L + A++G V     LI+ G  ++     G+T LH AS  G 
Sbjct: 282 ------------------LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN 323

Query: 407 IEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQI 466
           I++V+ L+    DV+AK + GY+ LH A + GHTD+  LL+K GA     +S   +P+ I
Sbjct: 324 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383

Query: 467 AECLHYAGISRILMHGGA 484
           A+ L Y  ++ +L     
Sbjct: 384 AKRLGYISVTDVLKVVTD 401

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  273 bits (701), Expect = 1e-86
 Identities = 81/307 (26%), Positives = 139/307 (45%), Gaps = 26/307 (8%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
                +G T LH+A    +  + +LLLE      + G+ G  TPL  A       IV+LL
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGL-TPLHVAVHHNNLDIVKLL 198

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
           L R  S      + + P+H+A +   +EV + LL  G + NA +  G T LHLA ++   
Sbjct: 199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 258

Query: 287 DCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
           +   LLL+  A  ++ N + G TPLH+ A  G+  +  +L++ G       + G T    
Sbjct: 259 EMVALLLSKQANGNLGN-KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP--- 314

Query: 347 AAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGK 406
                             L VA+  G ++ ++ L++  A +N K   G++ LH+A+ +G 
Sbjct: 315 ------------------LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH 356

Query: 407 IEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELL---VKKGADVEARTSKNVSP 463
            ++V +L+  G   +    DG T L  A   G+  VT++L     + + V       +S 
Sbjct: 357 TDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSF 416

Query: 464 MQIAECL 470
            +  + +
Sbjct: 417 PETVDEI 423

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  261 bits (670), Expect = 4e-82
 Identities = 96/298 (32%), Positives = 136/298 (45%), Gaps = 28/298 (9%)

Query: 196 GPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEV 255
           G      G  G  TPL  A+  G   IV+ LL R AS   S      P+H+A R GH EV
Sbjct: 4   GISGGGGGESGL-TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 256 LKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITA 315
            K LL   A VNA  KD  T LH A      +  +LLL N A P++     G TPLHI A
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT-TAGHTPLHIAA 121

Query: 316 SLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVR 375
             G+ + V  LL+K A++    K G T                      L VAA+ G+VR
Sbjct: 122 REGHVETVLALLEKEASQACMTKKGFTP---------------------LHVAAKYGKVR 160

Query: 376 TMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAV 435
             + L+E  A  N    +G T LH A     +++V++L+ +G    +   +GYT LH A 
Sbjct: 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA 220

Query: 436 ESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA-----TKDG 488
           +    +V   L++ G    A + + V+P+ +A    +A +  +L+   A      K G
Sbjct: 221 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  258 bits (663), Expect = 6e-81
 Identities = 79/333 (23%), Positives = 134/333 (40%), Gaps = 73/333 (21%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           + ++ + +T LH+A      ++ + LL+    V ++ +    TPL               
Sbjct: 41  NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPL--------------- 84

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
                             H A R GH  ++KLLL   AN N  T  G+T LH+A  +   
Sbjct: 85  ------------------HCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV 126

Query: 287 DCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
           +    LL   A       + G TPLH+ A  G  ++ +LLL++ A+     K+G T    
Sbjct: 127 ETVLALLEKEASQACMT-KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTP--- 182

Query: 347 AAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGK 406
                             L VA     +  ++ L+  G + +    +G+T LH A+ + +
Sbjct: 183 ------------------LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ 224

Query: 407 IEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQI 466
           +EV R L+  G   +A+   G T LH A + GH ++  LL+ K A+        ++P   
Sbjct: 225 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP--- 281

Query: 467 AECLHYA------GISRILMHGGA-----TKDG 488
              LH         ++ +L+  G      T+ G
Sbjct: 282 ---LHLVAQEGHVPVADVLIKHGVMVDATTRMG 311

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  211 bits (539), Expect = 7e-63
 Identities = 60/212 (28%), Positives = 89/212 (41%), Gaps = 28/212 (13%)

Query: 262 KGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQ 321
            G +     + G T LH+A         + LL  GA P++ N    +TPLH+ A  G+ +
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSN-VKVETPLHMAARAGHTE 61

Query: 322 MVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLI 381
           + K LLQ  A    + K  +T                      L  AAR G    ++ L+
Sbjct: 62  VAKYLLQNKAKVNAKAKDDQTP---------------------LHCAARIGHTNMVKLLL 100

Query: 382 EAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTD 441
           E  A  N     G T LH A+ +G +E V  L++K        + G+T LH A + G   
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 160

Query: 442 VTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
           V ELL+++ A   A     ++P      LH A
Sbjct: 161 VAELLLERDAHPNAAGKNGLTP------LHVA 186

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  173 bits (442), Expect = 7e-49
 Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 39/205 (19%)

Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
            G          G TPLH+ + +G+  +VK LLQ+GA+  + N   +T            
Sbjct: 3   PGISGGGGG-ESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP----------- 50

Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI 414
                     L +AAR G     + L++  A +N K     T LH A+  G   +V++L+
Sbjct: 51  ----------LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL 100

Query: 415 DKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA- 473
           +   + +     G+T LH A   GH +    L++K A     T K  +P      LH A 
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP------LHVAA 154

Query: 474 -----GISRILMHGGA-----TKDG 488
                 ++ +L+   A      K+G
Sbjct: 155 KYGKVRVAELLLERDAHPNAAGKNG 179

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 62.1 bits (152), Expect = 2e-10
 Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 13/105 (12%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           ++    G + LH A  Q   DIV LLL+ G         G  TPL  A   G   + ++L
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGT-TPLAIAKRLGYISVTDVL 396

Query: 227 ---LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNA 268
                  +    S+           R    E +  +L    +   
Sbjct: 397 KVVTDETSFVLVSDKH---------RMSFPETVDEILDVSEDEGE 432

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  268 bits (689), Expect = 5e-86
 Identities = 86/309 (27%), Positives = 134/309 (43%), Gaps = 9/309 (2%)

Query: 188 IVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLA 247
               L +        G       LEAA +  E  ++ LL     +   S+     P+HLA
Sbjct: 6   SALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA 65

Query: 248 LRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDG 307
                + +++LLL  GA+V+A  K G   LH A      +   LLL +GA  +  +    
Sbjct: 66  AGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD-LWQ 124

Query: 308 DTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCV 367
            TPLH  AS    ++  LLL  GA+  + N  GK+A D+A              G SL  
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ 184

Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKG---KIEVVRMLIDKGIDVDAKD 424
           AAR+ ++  +++ +        +     TALH A       + +V  +L+ KG +V+ K+
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN 244

Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
           +D  T LH A E  H DV E+L K GA + A  S   + +  A    +    R+L+  G+
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS 304

Query: 485 -----TKDG 488
                +  G
Sbjct: 305 DPSIISLQG 313

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  253 bits (648), Expect = 6e-80
 Identities = 80/328 (24%), Positives = 126/328 (38%), Gaps = 44/328 (13%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
            ++D +  T LH+A    R  IVQLLL+ G DV ++ + G   PL  A + G   + ELL
Sbjct: 52  HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGL-VPLHNACSYGHYEVTELL 110

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
           L   A     +   + P+H A     +EV  LLL  GA+   +   G +A+ +A     R
Sbjct: 111 LKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELR 170

Query: 287 DCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
           +                   G + L   A       VK  L      + + +S +TA   
Sbjct: 171 ERLTYEF------------KGHSLLQA-AREADLAKVKKTLALEIINFKQPQSHETALHC 217

Query: 347 AAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGK 406
           A    H +     +L                  L+  GA +N K+    T LH A+ +  
Sbjct: 218 AVASLHPKRKQVAEL------------------LLRKGANVNEKNKDFMTPLHVAAERAH 259

Query: 407 IEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQI 466
            +V+ +L   G  ++A D  G TALH A  +GH     LL+  G+D    + +  +    
Sbjct: 260 NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA--- 316

Query: 467 AECLHYA--GISRILMHG----GATKDG 488
                     + +IL        +  D 
Sbjct: 317 ---AQMGNEAVQQILSESTPMRTSDVDY 341

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  205 bits (523), Expect = 2e-61
 Identities = 62/275 (22%), Positives = 105/275 (38%), Gaps = 45/275 (16%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           ++ D    T LH A ++ R ++  LLL  G D       G  + ++ A        +   
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGK-SAVDMAPTPELRERLTYE 176

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVE---D 283
               +            +  A R   L  +K  L          +   TALH AV     
Sbjct: 177 FKGHS-----------LLQAA-READLAKVKKTLALEIINFKQPQSHETALHCAVASLHP 224

Query: 284 RRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTA 343
           +R+  A LLL  GA  + +N +D  TPLH+ A   +  ++++L + GA     +  G+TA
Sbjct: 225 KRKQVAELLLRKGANVNEKN-KDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTA 283

Query: 344 YDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASF 403
                                L  AA  G ++T + L+  G+  +   L G+TA    + 
Sbjct: 284 ---------------------LHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN- 321

Query: 404 KGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESG 438
               E V+ ++ +   +   D D    L  A ++G
Sbjct: 322 ----EAVQQILSESTPMRTSDVDY--RLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  188 bits (481), Expect = 3e-55
 Identities = 48/236 (20%), Positives = 77/236 (32%), Gaps = 34/236 (14%)

Query: 250 GGHLEVLKLLLIKGANVNALTKDGNTALH-LAVEDRRRDCARLLLANGARPDIRNARDGD 308
           G   +    L    A      +     L   A          LL          +     
Sbjct: 1   GEFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASD-GRKS 59

Query: 309 TPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVA 368
           TPLH+ A     ++V+LLLQ GA+ + ++K G                        L  A
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVP---------------------LHNA 98

Query: 369 ARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGY 428
              G     + L++ GA +N  DL  +T LH A+ K ++EV  +L+  G D    +  G 
Sbjct: 99  CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGK 158

Query: 429 TALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
           +A+  A      +      K  +            +Q A     A + + L     
Sbjct: 159 SAVDMAPTPELRERLTYEFKGHS-----------LLQAAREADLAKVKKTLALEII 203

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  264 bits (677), Expect = 4e-85
 Identities = 87/299 (29%), Positives = 128/299 (42%), Gaps = 28/299 (9%)

Query: 169 ADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLA 228
           A  +   LL  A+     D+VQ LLE G +V  Q   G  TPL  A       IVELLL 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 229 RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDC 288
             A     + +   P  LA   G +++LKL L KGA+VN     G TA   A    +   
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 289 ARLLLANGARPDIRN---------ARDGDTPLHITASLGYEQMVKLLL-QKGANKYIRNK 338
            + L   GA  ++R           + G T L   A  G+ +++K+LL + GA+    + 
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180

Query: 339 SGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTAL 398
            G+ A   A               D   +            L++ GA +N +   G T L
Sbjct: 181 MGRNALIHALLSSD--------DSDVEAIT---------HLLLDHGADVNVRGERGKTPL 223

Query: 399 HRASFKGKIEVVRMLIDK-GIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
             A  K  + +V+ L+++  I+++  D DG TAL  AVE     + ELL K+GA  +  
Sbjct: 224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  210 bits (538), Expect = 2e-64
 Identities = 80/268 (29%), Positives = 127/268 (47%), Gaps = 44/268 (16%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKD-GNTALHLAVEDRRRDCARLLLANGARPDI 301
            +  A++   +++++ LL  GANVN   ++ G T LH AV+  R D   LLL +GA P +
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 302 RNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKL 361
           R  ++G TP  + A  G  +++KL L KGA+    +  G TA                  
Sbjct: 68  RK-KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTA------------------ 108

Query: 362 GDSLCVAARKGEVRTMQRLIEAGAAINGKD----------LHGWTALHRASFKGKIEVVR 411
                 AA  G+V+ ++ L + GA +N +             G TAL  A+ KG +EV++
Sbjct: 109 ---FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

Query: 412 MLIDK-GIDVDAKDEDGYTALHCAVESGHTD----VTELLVKKGADVEARTSKNVSPMQI 466
           +L+D+ G DV+A D  G  AL  A+ S        +T LL+  GADV  R  +  +P+ +
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225

Query: 467 AECLHYAGISRILM-HGGA-----TKDG 488
           A    + G+ + L+            DG
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDG 253

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  201 bits (513), Expect = 1e-60
 Identities = 77/268 (28%), Positives = 108/268 (40%), Gaps = 39/268 (14%)

Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKAS 232
           G T LH A+   R DIV+LLL  G D   + + G  TP   AA AG   +++L L++ A 
Sbjct: 39  GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGA-TPFLLAAIAGSVKLLKLFLSKGAD 97

Query: 233 TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNA----------LTKDGNTALHLAVE 282
               +   +     A   G ++ LK L  +GANVN           L K G TAL  A E
Sbjct: 98  VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157

Query: 283 DRRRDCARLLLAN-GARPDIRNARDGDTPLHITASLG----YEQMVKLLLQKGANKYIRN 337
               +  ++LL   GA  +  +   G   L            E +  LLL  GA+  +R 
Sbjct: 158 KGHVEVLKILLDEMGADVNACD-NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG 216

Query: 338 KSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIE-AGAAINGKDLHGWT 396
           + GKT                      L +A  K  +  +QRL+E     IN  D  G T
Sbjct: 217 ERGKTP---------------------LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 255

Query: 397 ALHRASFKGKIEVVRMLIDKGIDVDAKD 424
           AL  A      ++  +L  +G   D  D
Sbjct: 256 ALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  188 bits (481), Expect = 3e-56
 Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 38/215 (17%)

Query: 270 TKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQK 329
             + N  L  AV++   D  + LL  GA  + +    G TPLH    +  E +V+LLL+ 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 330 GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAING 389
           GA+  +R K+G T                        +AA  G V+ ++  +  GA +N 
Sbjct: 62  GADPVLRKKNGATP---------------------FLLAAIAGSVKLLKLFLSKGADVNE 100

Query: 390 KDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDED----------GYTALHCAVESGH 439
            D +G+TA   A+  GK++ ++ L  +G +V+ + +           G TAL  A E GH
Sbjct: 101 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160

Query: 440 TDVTELLV-KKGADVEARTSKNVSPMQIAECLHYA 473
            +V ++L+ + GADV A  +   +       L +A
Sbjct: 161 VEVLKILLDEMGADVNACDNMGRNA------LIHA 189

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  113 bits (286), Expect = 2e-28
 Identities = 39/184 (21%), Positives = 63/184 (34%), Gaps = 41/184 (22%)

Query: 160 DPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLL-EFGPDVESQGRCGCSTPLEAAAAAG 218
                  +     G T L  A  +   +++++LL E G DV +    G    L       
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR-NAL------- 186

Query: 219 EALIVELLLARKASTERSETSTWGPIHLALRGGH----LEVLKLLLIKGANVNALTKDGN 274
                                       AL          +  LLL  GA+VN   + G 
Sbjct: 187 --------------------------IHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220

Query: 275 TALHLAVEDRRRDCARLLLAN-GARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANK 333
           T L LAVE +     + LL       +  +  DG T L +   L  +++ +LL ++GA+ 
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTD-SDGKTALLLAVELKLKKIAELLCKRGAST 279

Query: 334 YIRN 337
              +
Sbjct: 280 DCGD 283

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  249 bits (638), Expect = 4e-79
 Identities = 82/310 (26%), Positives = 119/310 (38%), Gaps = 48/310 (15%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
             ADA+ +    +         ++  +      + +   G    L A             
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAAC------------ 48

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
                                   G  E +  LL +GA++N    DG TALH A  D   
Sbjct: 49  ----------------------SSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNV 86

Query: 287 DCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
           D  + L+ NGA  +  +  +G  PLH  AS GY  + + L+ +GA+    N  G T  D+
Sbjct: 87  DMVKFLVENGANINQPD-NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145

Query: 347 AAECGHSRLFDALKL----GDSLCVAARKGEVRTM-----QRLIEAGAAINGKDLHGWTA 397
           A E       + L+           AARK E R M     Q L             G TA
Sbjct: 146 AEEEAME---ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTA 202

Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
           LH A+ KG  EV+++LI    DV+ KD DG+T LH A   G  +   +LV+   D+EA  
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262

Query: 458 SKNVSPMQIA 467
               +   +A
Sbjct: 263 KVGQTAFDVA 272

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  233 bits (596), Expect = 8e-73
 Identities = 72/289 (24%), Positives = 116/289 (40%), Gaps = 29/289 (10%)

Query: 169 ADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLA 228
                  +   A +    + V  LLE G D+      G  T L  A       +V+ L+ 
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGL-TALHQACIDDNVDMVKFLVE 94

Query: 229 RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDC 288
             A+  + +   W P+H A   G+L++ + L+ +GA+V A+  +G+T L +A E+   + 
Sbjct: 95  NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEEL 154

Query: 289 ARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAA 348
            +  +        R   D +        +      + L     N     KSG TA     
Sbjct: 155 LQNEVN-------RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTA----- 202

Query: 349 ECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIE 408
                           L VAA KG    ++ LI+A   +N KD  GWT LH A+  GK E
Sbjct: 203 ----------------LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE 246

Query: 409 VVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
             R+L++   D++A ++ G TA   A E     + EL  K+      + 
Sbjct: 247 ACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  180 bits (459), Expect = 9e-53
 Identities = 57/260 (21%), Positives = 96/260 (36%), Gaps = 29/260 (11%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           + A+  G T LH A      D+V+ L+E G ++      G   PL AAA+ G   I E L
Sbjct: 67  NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW-IPLHAAASCGYLDIAEYL 125

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
           +++ A      +    P+ +A      E+L+  + +         D   A         R
Sbjct: 126 ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV------DIEAARKEEERIMLR 179

Query: 287 DCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
           D  + L +          + G T LH+ A+ GY +++KLL+Q   +  I++  G T    
Sbjct: 180 DARQWLNSGHINDVRHA-KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTP--- 235

Query: 347 AAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGK 406
                             L  AA  G+    + L+E    +   +  G TA   A     
Sbjct: 236 ------------------LHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277

Query: 407 IEVVRMLIDKGIDVDAKDED 426
             +  +   + +    K E 
Sbjct: 278 GYLEELQKKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  153 bits (390), Expect = 9e-43
 Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 29/174 (16%)

Query: 300 DIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL 359
            + +A        +   +G E  ++  + K     ++   G                   
Sbjct: 2   KMADA-KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFL--------------- 45

Query: 360 KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGID 419
                   A   G+   + RL+E GA IN  ++ G TALH+A     +++V+ L++ G +
Sbjct: 46  -------AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 420 VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
           ++  D +G+  LH A   G+ D+ E L+ +GA V A  S+  +P      L  A
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP------LDIA 146

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  153 bits (389), Expect = 1e-42
 Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 8/207 (3%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           +  D +G   LH A +    DI + L+  G  V +    G  TPL+ A       +++  
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD-TPLDIAEEEAMEELLQNE 158

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
           + R+     +            R    +  + L     N     K G TALH+A      
Sbjct: 159 VNRQGVDIEA------ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT 212

Query: 287 DCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
           +  +LL+      +I++  DG TPLH  A  G E+  ++L++   +    NK G+TA+DV
Sbjct: 213 EVLKLLIQARYDVNIKD-YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV 271

Query: 347 AAECGHSRLFDALKLGDSLCVAARKGE 373
           A E     L +  K  + L    R+ +
Sbjct: 272 ADEDILGYLEELQKKQNLLHSEKREKK 298

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 87.2 bits (217), Expect = 4e-19
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 387 INGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELL 446
           +   D           + G    +   + K      K +DG      A  SG T+    L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59

Query: 447 VKKGADVEARTSKNVSPMQIAECLHYA 473
           +++GAD+       ++       LH A
Sbjct: 60  LERGADINYANVDGLTA------LHQA 80

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 66.8 bits (164), Expect = 2e-12
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
                 G T LH+A A+   ++++LL++   DV  +   G  TPL AAA  G+     +L
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGW-TPLHAAAHWGKEEACRIL 251

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGN 274
           +      E           +A       + +L   +    +   +  +
Sbjct: 252 VENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.1 bits (113), Expect = 6e-06
 Identities = 11/73 (15%), Positives = 17/73 (23%), Gaps = 4/73 (5%)

Query: 420 VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
           +   D             G     E  V K    + +       +          + R+L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60

Query: 480 MHG----GATKDG 488
             G     A  DG
Sbjct: 61  ERGADINYANVDG 73

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  247 bits (634), Expect = 1e-78
 Identities = 70/295 (23%), Positives = 115/295 (38%), Gaps = 33/295 (11%)

Query: 179 IAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSET 238
           +  +         L+  G  + S    G    ++ +  AG      + L        +  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMD--GKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAV- 57

Query: 239 STWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGAR 298
           S W P+H A   GH   L+ L+ +G  VN +T D  + LH A       C ++LL +GA+
Sbjct: 58  SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117

Query: 299 PDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDA 358
            +     D  TPL      G    V LLLQ GA+    +    +                
Sbjct: 118 VNGVT-ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASP--------------- 160

Query: 359 LKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGI 418
                 +  AAR+G V  +  LI  G  I+ K  H  T L+ A    +   V+ L++ G 
Sbjct: 161 ------IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 214

Query: 419 DVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
           DV+ + +   + LH  V +   ++  LL+  GAD +A+ ++   P      +   
Sbjct: 215 DVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRP------VELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  235 bits (602), Expect = 5e-74
 Identities = 66/283 (23%), Positives = 108/283 (38%), Gaps = 33/283 (11%)

Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKAS 232
           G             D   + L   P +         +P+  AA  G  L +  L+++  +
Sbjct: 33  GSKPAGPR------DFPGIRLLSNPLM-GDAVSDW-SPMHEAAIHGHQLSLRNLISQGWA 84

Query: 233 TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLL 292
                     P+H A  GGHL  +K+LL  GA VN +T D +T L  A      DC  LL
Sbjct: 85  VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 144

Query: 293 LANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
           L +GA   ++   D  +P+H  A  G+ + V  L+  G N   +     T          
Sbjct: 145 LQHGA--SVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTP--------- 193

Query: 353 SRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRM 412
                       L +A    +   +++L+E+GA +N +     + LH        E+  +
Sbjct: 194 ------------LYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACL 240

Query: 413 LIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEA 455
           L+D G D  AK+ +G   +              L ++GA +  
Sbjct: 241 LMDFGADTQAKNAEGKRPVELVPPESPL-AQLFLEREGASLPK 282

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  211 bits (541), Expect = 6e-65
 Identities = 56/280 (20%), Positives = 101/280 (36%), Gaps = 31/280 (11%)

Query: 214 AAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDG 273
            ++         L+ R +    S     G +  +   G  +   + L+    +       
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMA-SMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD-AVSD 59

Query: 274 NTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANK 333
            + +H A     +   R L++ G   +I    D  +PLH     G+   VK+LL+ GA  
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAVNIIT-ADHVSPLHEACLGGHLSCVKILLKHGAQV 118

Query: 334 YIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLH 393
                   T                      L  A   G    +  L++ GA++  +   
Sbjct: 119 NGVTADWHTP---------------------LFNACVSGSWDCVNLLLQHGASVQPES-D 156

Query: 394 GWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADV 453
             + +H A+ +G +E V  LI  G ++D K     T L+ A E+      + L++ GADV
Sbjct: 157 LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 216

Query: 454 EARTSKNVSPMQIAECLHYAGISRILMHGGA-----TKDG 488
                ++ SP+          ++ +LM  GA       +G
Sbjct: 217 NQGKGQD-SPLHAVVRTASEELACLLMDFGADTQAKNAEG 255

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  249 bits (637), Expect = 6e-78
 Identities = 73/341 (21%), Positives = 125/341 (36%), Gaps = 42/341 (12%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           +                    +                      L    AAG   I E +
Sbjct: 55  NELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESP-IKL-HTEAAGSYAITEPI 112

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLI--------KGANVNALTKDGNTALH 278
                +           +H        E  + L++         GA+VNA+  D NT L 
Sbjct: 113 TRESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM 171

Query: 279 LAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQK---GANKYI 335
           LAV  RRR     L+  GA P I N +   + LH  A+     M+  +L       +   
Sbjct: 172 LAVLARRRRLVAYLMKAGADPTIYN-KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE 230

Query: 336 RNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAING------ 389
            +++G TA  + A                      + +V + + L+E GA ++       
Sbjct: 231 LDRNGMTALMIVAHNEG------------------RDQVASAKLLVEKGAKVDYDGAARK 272

Query: 390 --KDLHGWTALHRASFKGKIEVVRMLI-DKGIDVDAKDEDGYTALHCAVESGHTDVTELL 446
             +   G TALH A+    + +V+ L+ +KG + D +DEDG T +  A + G  +V   L
Sbjct: 273 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 332

Query: 447 VKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKD 487
           +++GA VEA  + + +  Q+A+  ++  I  I       ++
Sbjct: 333 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  182 bits (464), Expect = 1e-52
 Identities = 37/248 (14%), Positives = 74/248 (29%), Gaps = 34/248 (13%)

Query: 229 RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDC 288
           +     +S TS+   +  A   G+++            N L             +     
Sbjct: 26  KNRKNHQSITSSQHSLLEASYDGYIKR---------QRNELQHYSLYPNPQGYGNGNDFL 76

Query: 289 ARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAA 348
                 N   P      +    LH   + G   + + + ++  N  I  +  +T     A
Sbjct: 77  GDFNHTNLQIPTEPE-PESPIKLHT-EAAGSYAITEPITRESVN-IIDPRHNRTVLHWIA 133

Query: 349 ECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIE 408
               +   + L + ++             +  I AGA +N  D    T L  A    +  
Sbjct: 134 SNSSAEKSEDLIVHEA-------------KECIAAGADVNAMDCDENTPLMLAVLARRRR 180

Query: 409 VVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKK---GADVEARTSKNVSPMQ 465
           +V  L+  G D    ++   +ALH A  +    +   ++       D+E      ++   
Sbjct: 181 LVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA-- 238

Query: 466 IAECLHYA 473
               L   
Sbjct: 239 ----LMIV 242

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  241 bits (618), Expect = 6e-77
 Identities = 67/288 (23%), Positives = 112/288 (38%), Gaps = 59/288 (20%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
                  ++ LH A      DI  +L++ G ++++       TPL               
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR-TPL--------------- 48

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
                               A    HLE +K L+  GA V+    +G+T LHLA +    
Sbjct: 49  ------------------MEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHY 90

Query: 287 DCARLLLANGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAY 344
           +  + LL+NG   D+ N +D  G TP+       +  +VKLLL KG++  IR+       
Sbjct: 91  EVVQYLLSNGQ-MDV-NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENIC- 147

Query: 345 DVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFK 404
                               L  AA  G V   + L+ A   ++  ++HG + LH A+ +
Sbjct: 148 --------------------LHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARE 187

Query: 405 GKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGAD 452
            + + V + + +  DV  K+++G T L CA  +        + K   D
Sbjct: 188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  227 bits (581), Expect = 2e-71
 Identities = 56/243 (23%), Positives = 105/243 (43%), Gaps = 23/243 (9%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIR 302
           P+H A   GH+++  +L+  GAN++  ++D  T L  A E+   +  + L+  GA  D +
Sbjct: 14  PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73

Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGA-NKYIRNKSGKTAYDVAAECGHSRLFDALKL 361
           +  +G T LH+ A  G+ ++V+ LL  G  +   ++  G T                   
Sbjct: 74  D-AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP------------------ 114

Query: 362 GDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVD 421
              +  A     V  ++ L+  G+ IN +D      LH A+F G +++  +L+    D+ 
Sbjct: 115 ---MIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH 171

Query: 422 AKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMH 481
           A +  G + LH A      D   L + + +DV  +  +  +P+Q A        +  +  
Sbjct: 172 AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231

Query: 482 GGA 484
              
Sbjct: 232 ALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  203 bits (520), Expect = 2e-62
 Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 29/211 (13%)

Query: 264 ANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMV 323
            N     ++  + LH A E    D   +L+  GA  D  +  D  TPL   A   + + V
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCS-EDQRTPLMEAAENNHLEAV 60

Query: 324 KLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEA 383
           K L++ GA    ++  G T   +AA+ GH                        +Q L+  
Sbjct: 61  KYLIKAGALVDPKDAEGSTCLHLAAKKGH---------------------YEVVQYLLSN 99

Query: 384 GAA-INGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDV 442
           G   +N +D  GWT +  A+    +++V++L+ KG D++ +D +    LH A  SG  D+
Sbjct: 100 GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI 159

Query: 443 TELLVKKGADVEARTSKNVSPMQIAECLHYA 473
            E+L+    D+ A      SP      LH A
Sbjct: 160 AEILLAAKCDLHAVNIHGDSP------LHIA 184

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  239 bits (612), Expect = 5e-76
 Identities = 80/295 (27%), Positives = 119/295 (40%), Gaps = 65/295 (22%)

Query: 166 ADSADAQGQTLLHIAIAQRRPDIVQLLLEF----GPDVESQGRCGCSTPLEAAAAAGEAL 221
           A  AD  G T LHIA+ Q     V  L+      G +++        TPL          
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPL---------- 50

Query: 222 IVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAV 281
                                  HLA+      V++LL+  GA+  AL + G TA HLA 
Sbjct: 51  -----------------------HLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC 87

Query: 282 EDRRRDCARLLLANGA--RPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRN 337
           E R   C R LL + A    D+  AR+  G T LH+  +   ++ V+LLL++GA+    +
Sbjct: 88  EHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVD 146

Query: 338 -KSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWT 396
            KSG++                      L  A     +  +Q L++ GA +N +   G +
Sbjct: 147 IKSGRSP---------------------LIHAVENNSLSMVQLLLQHGANVNAQMYSGSS 185

Query: 397 ALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGA 451
           ALH AS +G + +VR L+  G D   K+    T L  A      D+      + A
Sbjct: 186 ALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  223 bits (572), Expect = 5e-70
 Identities = 67/251 (26%), Positives = 101/251 (40%), Gaps = 31/251 (12%)

Query: 243 PIHLALRGGHLEVLKLLL----IKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGAR 298
           P+H+A+  G+L  +  L+      G  ++       T LHLAV        RLL+  GA 
Sbjct: 12  PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 71

Query: 299 PDIRNARDGDTPLHITASLGYEQMVKLLLQKGA----NKYIRNKSGKTAYDVAAECGHSR 354
           P   + R G T  H+         ++ LL   A    +   RN  G TA           
Sbjct: 72  PMALD-RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA----------- 119

Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLH-GWTALHRASFKGKIEVVRML 413
                     L VA       T+Q L+E GA I+  D+  G + L  A     + +V++L
Sbjct: 120 ----------LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169

Query: 414 IDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
           +  G +V+A+   G +ALH A   G   +   LV+ GAD   +   N +P+ +A      
Sbjct: 170 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI 229

Query: 474 GISRILMHGGA 484
            I R      A
Sbjct: 230 DILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  191 bits (487), Expect = 2e-57
 Identities = 56/217 (25%), Positives = 92/217 (42%), Gaps = 37/217 (17%)

Query: 266 VNALTKDGNTALHLAVEDRRRDCARLLL----ANGARPDIRNARDGDTPLHITASLGYEQ 321
                +DG+T LH+AV          L+      G   DI N     TPLH+        
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN-NLRQTPLHLAVITTLPS 60

Query: 322 MVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLI 381
           +V+LL+  GA+    ++ G+TA                       +A        ++ L+
Sbjct: 61  VVRLLVTAGASPMALDRHGQTA---------------------AHLACEHRSPTCLRALL 99

Query: 382 EAGAA----INGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD-EDGYTALHCAVE 436
           ++ A     +  ++  G TALH A      E V++L+++G D+DA D + G + L  AVE
Sbjct: 100 DSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159

Query: 437 SGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
           +    + +LL++ GA+V A+     S       LH A
Sbjct: 160 NNSLSMVQLLLQHGANVNAQMYSGSSA------LHSA 190

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  146 bits (370), Expect = 1e-40
 Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 7/171 (4%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFG----PDVESQGRCGCSTPLEAAAAAGEALI 222
            + D  GQT  H+A   R P  ++ LL+       D+E++   G  T L  A        
Sbjct: 73  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL-TALHVAVNTECQET 131

Query: 223 VELLLARKAS-TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAV 281
           V+LLL R A        S   P+  A+    L +++LLL  GANVNA    G++ALH A 
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 191

Query: 282 EDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGAN 332
                   R L+ +GA   ++N    DTPL +  S     +++    + A+
Sbjct: 192 GRGLLPLVRTLVRSGADSSLKN-CHNDTPLMVARSRRVIDILRGKATRPAS 241

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  234 bits (599), Expect = 4e-74
 Identities = 62/291 (21%), Positives = 105/291 (36%), Gaps = 57/291 (19%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
              D      +  A      +  + L+E G DV    +    T L               
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENV-TLL--------------- 46

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKD-GNTALHLAVEDRR 285
                             H A     ++++K  + KGA V+ L  D  +T LH A     
Sbjct: 47  ------------------HWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 88

Query: 286 RDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYD 345
                 L+  GA P + +  +G + +H+ A  G+  +V  L+ KG +  + +++G T   
Sbjct: 89  LSMVVQLMKYGADPSLID-GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLM 147

Query: 346 VAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKD-LHGWTALHRASFK 404
            AA   HS                    V   + L+    ++N  D  H  TALH A   
Sbjct: 148 WAAYRTHS--------------------VDPTRLLLTFNVSVNLGDKYHKNTALHWAVLA 187

Query: 405 GKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEA 455
           G   V+ +L++ G +VDA++  G +AL  A +  +  +   L +       
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  230 bits (590), Expect = 9e-73
 Identities = 63/247 (25%), Positives = 107/247 (43%), Gaps = 23/247 (9%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIR 302
            I  A + G  E  + L+  G +V    K+  T LH A  + R D  +  ++ GA  D  
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71

Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLG 362
                 TPLH     G+  MV  L++ GA+  + +  G +                    
Sbjct: 72  GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSC------------------- 112

Query: 363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKG-KIEVVRMLIDKGIDVD 421
             + +AA+ G    +  LI  G  ++  D +G T L  A+++   ++  R+L+   + V+
Sbjct: 113 --IHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN 170

Query: 422 AKDE-DGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
             D+    TALH AV +G+T V  LL++ GA+V+A+  K  S + +A+      +   L 
Sbjct: 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQ 230

Query: 481 HGGATKD 487
                K 
Sbjct: 231 EARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  194 bits (495), Expect = 8e-59
 Identities = 52/238 (21%), Positives = 85/238 (35%), Gaps = 42/238 (17%)

Query: 265 NVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVK 324
           ++  +       +  A +    +  R L+  G      + ++  T LH  A      +VK
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPD-KENVTLLHWAAINNRIDLVK 59

Query: 325 LLLQKGANKYIR-NKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEA 383
             + KGA           T                      L  A R+G +  + +L++ 
Sbjct: 60  YYISKGAIVDQLGGDLNSTP---------------------LHWATRQGHLSMVVQLMKY 98

Query: 384 GAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHT-DV 442
           GA  +  D  G + +H A+  G   +V  LI KG DVD  D++G T L  A    H+ D 
Sbjct: 99  GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP 158

Query: 443 TELLVKKGADVEARTSKN-VSPMQIAECLHYA------GISRILMHGGA-----TKDG 488
           T LL+     V      +  +       LH+A       +  +L+  GA        G
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTA------LHWAVLAGNTTVISLLLEAGANVDAQNIKG 210

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  111 bits (281), Expect = 3e-28
 Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 3/139 (2%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEAL-IVEL 225
              D +G + +H+A       IV  L+  G DV+   + G  TPL  AA    ++    L
Sbjct: 103 SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGM-TPLMWAAYRTHSVDPTRL 161

Query: 226 LLARKAS-TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDR 284
           LL    S     +      +H A+  G+  V+ LLL  GANV+A    G +AL LA + +
Sbjct: 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK 221

Query: 285 RRDCARLLLANGARPDIRN 303
                  L          N
Sbjct: 222 NVWMINHLQEARQAKGYDN 240

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  235 bits (601), Expect = 1e-72
 Identities = 60/368 (16%), Positives = 113/368 (30%), Gaps = 71/368 (19%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
             +D +    +H+A  + + D V+ L+E G     Q R GC T L  A   G     + L
Sbjct: 14  IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGC-TALHLACKFGCVDTAKYL 72

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLL---------------------IKGAN 265
            +              PIHLA+     +++  L+                     +    
Sbjct: 73  ASVGEVHSLWHGQK--PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIG 130

Query: 266 VNALTKDGNTALHLAVE--DRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMV 323
            +     G TALH  V       +  ++L+  GA P  ++ +  +TPL         + +
Sbjct: 131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD-KADETPLMRAMEFRNREAL 189

Query: 324 KLLL-----QKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQ 378
            L++     +        NK G +                      L  A          
Sbjct: 190 DLMMDTVPSKSSLRLDYANKQGNSH---------------------LHWAILINWEDVAM 228

Query: 379 RLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDK-------------GIDVDAKDE 425
           R +E G  +N +D      L+ +     + + + L+ K             G  V     
Sbjct: 229 RFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRV 288

Query: 426 DGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA- 484
                +  A +    +V +LL +K  +V    +         +      + R+ +   A 
Sbjct: 289 VWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAP 348

Query: 485 ----TKDG 488
               ++  
Sbjct: 349 VRTRSRSR 356

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  216 bits (552), Expect = 1e-65
 Identities = 45/309 (14%), Positives = 95/309 (30%), Gaps = 56/309 (18%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEAL--IVE 224
           + A  +GQ    +       ++ ++          +   G  T L      G     +++
Sbjct: 105 EGAKERGQMPESLLNECDEREVNEI------GSHVKHCKGQ-TALHWCVGLGPEYLEMIK 157

Query: 225 LLLARKASTERSETSTWGPIHLALRGGHLEVLKLLL-----IKGANVNALTKDGNTALHL 279
           +L+   AS    + +   P+  A+   + E L L++          ++   K GN+ LH 
Sbjct: 158 ILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217

Query: 280 AVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKS 339
           A+     D A   +  G   ++ +  +   PL+++       + K LLQK     I+   
Sbjct: 218 AILINWEDVAMRFVEMGIDVNMED-NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACP 276

Query: 340 GKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALH 399
                                                       G  +    +     + 
Sbjct: 277 YHN-----------------------------------------GTTVLPDRVVWLDFVP 295

Query: 400 RASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSK 459
            A+   K EV+++L +K  +V      G        +     V  + +   A V  R+  
Sbjct: 296 AAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRS 355

Query: 460 NVSPMQIAE 468
                 +++
Sbjct: 356 RARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  169 bits (430), Expect = 7e-48
 Identities = 43/219 (19%), Positives = 68/219 (31%), Gaps = 44/219 (20%)

Query: 257 KLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITAS 316
            +      N      +    +H+A    + D  R L+  G  P I+N R G T LH+   
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQN-RFGCTALHLACK 62

Query: 317 LGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRT 376
            G     K L   G         G+                       + +A    +   
Sbjct: 63  FGCVDTAKYLASVGEV--HSLWHGQKP---------------------IHLAVMANKTDL 99

Query: 377 MQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVE 436
           +  L+E           G       +   + EV        I    K   G TALH  V 
Sbjct: 100 VVALVEGAKER------GQMPESLLNECDEREVN------EIGSHVKHCKGQTALHWCVG 147

Query: 437 SG--HTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
            G  + ++ ++LV+ GA   A+   + +P      L  A
Sbjct: 148 LGPEYLEMIKILVQLGASPTAKDKADETP------LMRA 180

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  111 bits (281), Expect = 3e-27
 Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 14/107 (13%)

Query: 387 INGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELL 446
               D      +H A+ KG+ + VR LI+ G+    ++  G TALH A + G  D  + L
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL 72

Query: 447 VKKGADVEARTSKNVSPMQIAECLHYA------GISRILMHGGATKD 487
              G            P      +H A       +   L+ G   + 
Sbjct: 73  ASVGEVHSLW--HGQKP------IHLAVMANKTDLVVALVEGAKERG 111

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 77.2 bits (191), Expect = 2e-15
 Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 15/86 (17%)

Query: 412 MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH 471
           M     ++    D++    +H A   G TD    L++ G     +     +       LH
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTA------LH 58

Query: 472 YA------GISRILMHGGA---TKDG 488
            A        ++ L   G       G
Sbjct: 59  LACKFGCVDTAKYLASVGEVHSLWHG 84

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  230 bits (588), Expect = 7e-72
 Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 36/286 (12%)

Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKAS 232
           G  L  I   +     ++  L    D       G  +    A A     +V  LL   A 
Sbjct: 1   GMDLSRINTWKS--KQLKSFLS-SKDTFKADVHGH-SASYYAIADNNVRLVCTLLNAGAL 56

Query: 233 TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLL 292
               E     P+H A      +++K+LL  G + +     GNTAL+ AV+       +L 
Sbjct: 57  KNLLENEF--PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLF 114

Query: 293 LANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
           +    R          T  +    L    +V   L +  +         +          
Sbjct: 115 VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-FDLAILLSC--------- 164

Query: 353 SRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWT-ALHRASFKGKIEVVR 411
                       + +  + G V  M  L++   + N  +   +   +  A     IE+++
Sbjct: 165 ------------IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212

Query: 412 MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
            L    I++        +A    V     ++ +++++K  + ++ +
Sbjct: 213 ALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDS 251

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  214 bits (548), Expect = 7e-66
 Identities = 43/229 (18%), Positives = 79/229 (34%), Gaps = 32/229 (13%)

Query: 246 LALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNAR 305
             +     + LK  L    +       G++A + A+ D        LL  GA     N  
Sbjct: 5   SRINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGA--LK-NLL 60

Query: 306 DGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSL 365
           + + PLH  A+L   ++VK+LL  G +    +  G TA                     L
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTA---------------------L 99

Query: 366 CVAARKGEVRTMQRLIEAGAAINGKDLHGW-TALHRASFKGKIEVVRMLIDKGIDVDAKD 424
             A   G ++T++  ++    +      GW T+ + A     + +V   + +        
Sbjct: 100 YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI-PSTFDL 158

Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
               + +H  +++GH D+  LL+          S    P      +  A
Sbjct: 159 AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPD-----IKLA 202

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  212 bits (542), Expect = 4e-65
 Identities = 47/287 (16%), Positives = 91/287 (31%), Gaps = 33/287 (11%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
             AD  G +  + AIA     +V  LL  G             PL  AA   +  IV++L
Sbjct: 25  FKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLEN---EFPLHQAATLEDTKIVKIL 81

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDG-NTALHLAVEDRR 285
           L       + +      ++ A+  G+++ +KL + K   +    K G  T+ + AV    
Sbjct: 82  LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 141

Query: 286 RDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYD 345
                  L+        +     + +HIT   G+  M+ LLL    +    N        
Sbjct: 142 VSIVSYFLSEIP--STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIP-- 197

Query: 346 VAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKG 405
                              + +A    ++  +Q L +    I        +A        
Sbjct: 198 ------------------DIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLD 232

Query: 406 KIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGAD 452
             E+ +M+I+K ++  +        +    +          ++    
Sbjct: 233 DAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYV 279

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 80.7 bits (200), Expect = 5e-17
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 11/80 (13%)

Query: 394 GWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADV 453
           G       +   K + ++  +    D    D  G++A + A+   +  +   L+  GA  
Sbjct: 1   GMDLSRINT--WKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57

Query: 454 EARTSKNVSPMQIAECLHYA 473
                 N  P      LH A
Sbjct: 58  NLLE--NEFP------LHQA 69

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  227 bits (582), Expect = 8e-72
 Identities = 60/238 (25%), Positives = 95/238 (39%), Gaps = 28/238 (11%)

Query: 222 IVELLLARKASTERSETSTWG--PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHL 279
           ++   + + AS   ++T   G   +HLA R    +  K LL   A+ N     G T LH 
Sbjct: 6   VISDFIYQGASLH-NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 64

Query: 280 AVEDRRRDCARLLLANGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRN 337
           AV    +   ++L+ N A  D+ +AR   G TPL + A L  E M++ L+   A+    +
Sbjct: 65  AVSADAQGVFQILIRNRA-TDL-DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 122

Query: 338 KSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTA 397
             GK+A                     L  AA    V     L++ GA  + ++    T 
Sbjct: 123 DLGKSA---------------------LHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161

Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEA 455
           L  A+ +G  E  ++L+D   + D  D         A E  H D+  LL +       
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  216 bits (554), Expect = 1e-67
 Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 24/237 (10%)

Query: 250 GGHLEVLKLLLIKGANV-NALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGD 308
           G    V+   + +GA++ N   + G TALHLA    R D A+ LL   A  +I++   G 
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD-NMGR 59

Query: 309 TPLHITASLGYEQMVKLLLQKGA-NKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCV 367
           TPLH   S   + + ++L++  A +   R   G T                      L +
Sbjct: 60  TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTP---------------------LIL 98

Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
           AAR      ++ LI + A +N  D  G +ALH A+    ++   +L+  G + D ++   
Sbjct: 99  AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 158

Query: 428 YTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
            T L  A   G  +  ++L+   A+ +     +  P  IA+   +  I R+L     
Sbjct: 159 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  182 bits (464), Expect = 2e-54
 Identities = 53/249 (21%), Positives = 92/249 (36%), Gaps = 32/249 (12%)

Query: 186 PDIVQLLLEFGPDVE-SQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPI 244
           P ++   +  G  +     R G  T L  AA    +   + LL   A     +     P+
Sbjct: 4   PAVISDFIYQGASLHNQTDRTGE-TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 62

Query: 245 HLALRGGHLEVLKLLLIKGA-NVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRN 303
           H A+      V ++L+   A +++A   DG T L LA           L+ + A  +  +
Sbjct: 63  HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 122

Query: 304 ARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGD 363
              G + LH  A++       +LL+ GANK ++N   +T                     
Sbjct: 123 -DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP-------------------- 161

Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
            L +AAR+G   T + L++  A  +  D         A  +   ++VR+L +  +     
Sbjct: 162 -LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS-- 218

Query: 424 DEDGYTALH 432
                  LH
Sbjct: 219 -----PQLH 222

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  227 bits (581), Expect = 7e-71
 Identities = 61/296 (20%), Positives = 95/296 (32%), Gaps = 41/296 (13%)

Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGPD---VESQGRCGCSTPLEAAAAAGEALIVELLLAR 229
           G T LH+A+  +    +  LL F      ++ Q   G  T L  AA  GEA  VE L A 
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQ-TALHLAAILGEASTVEKLYAA 67

Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNT-------------- 275
            A    +E      +HLA R        +LL    +      D                 
Sbjct: 68  GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127

Query: 276 ALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYI 335
           A   +  +   +          + +  N  DG TPLH+       +MV+LL   GA+   
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAEN-YDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186

Query: 336 RNK-SGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHG 394
                G+T                      L +A        ++ L++AGA    +   G
Sbjct: 187 PEPTCGRTP---------------------LHLAVEAQAASVLELLLKAGADPTARMYGG 225

Query: 395 WTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKG 450
            T L  A  +    + R+L   G        D  +    +     +D  +   +  
Sbjct: 226 RTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  227 bits (580), Expect = 1e-70
 Identities = 67/257 (26%), Positives = 95/257 (36%), Gaps = 21/257 (8%)

Query: 243 PIHLALRGGHLEVLKLLLIKGAN---VNALTKDGNTALHLAVEDRRRDCARLLLANGARP 299
            +HLA+   H   L  LL   A    ++     G TALHLA           L A GA  
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71

Query: 300 DIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTA--YDVAAECGHSRLFD 357
            +   R G T LH+   +       +LLQ   +              D   +  H+    
Sbjct: 72  LVAE-RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA-- 128

Query: 358 ALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKG 417
                     +    E     R  +    +  ++  G T LH A      E+VR+L D G
Sbjct: 129 -------AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 418 IDVDAKDED-GYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGIS 476
            D++  +   G T LH AVE+    V ELL+K GAD  AR     +P+  A       ++
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA 241

Query: 477 RILMHGGA-----TKDG 488
           R+L   GA       D 
Sbjct: 242 RLLRAHGAPEPEDGGDK 258

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  182 bits (465), Expect = 7e-54
 Identities = 56/238 (23%), Positives = 87/238 (36%), Gaps = 29/238 (12%)

Query: 266 VNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARD--GDTPLHITASLGYEQMV 323
              +T+DG+TALHLAV  +       LL   A  +  + ++  G T LH+ A LG    V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 324 KLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL-KLGDSLCVAARKGEVRTMQRLIE 382
           + L   GA   +  + G TA  +A           L +   S    A           + 
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT-------YLT 114

Query: 383 AGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDV 442
                     H   A+  +    + E      D  + ++A++ DG+T LH AV     ++
Sbjct: 115 QSQDCTPDTSHAPAAVD-SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM 173

Query: 443 TELLVKKGADVEARTSKN-VSPMQIAECLHYA------GISRILMHGGA-----TKDG 488
             LL   GAD+         +P      LH A       +  +L+  GA        G
Sbjct: 174 VRLLRDAGADLNKPEPTCGRTP------LHLAVEAQAASVLELLLKAGADPTARMYGG 225

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  133 bits (338), Expect = 1e-35
 Identities = 37/191 (19%), Positives = 57/191 (29%), Gaps = 37/191 (19%)

Query: 164 NPADSADAQGQTLLHIAIAQR-RPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALI 222
              D           +        +      ++   +E++   G  TPL           
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH-TPL----------- 162

Query: 223 VELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKD-GNTALHLAV 281
                                 H+A+     E+++LL   GA++N      G T LHLAV
Sbjct: 163 ----------------------HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200

Query: 282 EDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGK 341
           E +      LLL  GA P  R    G TPL          + +LL   GA +        
Sbjct: 201 EAQAASVLELLLKAGADPTARM-YGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKL 259

Query: 342 TAYDVAAECGH 352
           +    +     
Sbjct: 260 SPCSSSGSDSD 270

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  215 bits (551), Expect = 7e-67
 Identities = 67/290 (23%), Positives = 112/290 (38%), Gaps = 46/290 (15%)

Query: 198 DVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLK 257
           DV  +G  G  TPL  A+ +G                          +         V+ 
Sbjct: 2   DVNVRGPDGF-TPLMIASCSGGG--------------------LETGNSEEEEDAPAVIS 40

Query: 258 LLLIKGANV-NALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITAS 316
             + +GA++ N   + G TALHLA    R D A+ LL   A  +I++   G TPLH   S
Sbjct: 41  DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVS 99

Query: 317 LGYEQMVKLLLQKGA-NKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVR 375
              + + ++L++  A +   R   G T                      L +AAR     
Sbjct: 100 ADAQGVFQILIRNRATDLDARMHDGTTP---------------------LILAARLAVEG 138

Query: 376 TMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAV 435
            ++ LI + A +N  D  G +ALH A+    ++   +L+  G + D ++    T L  A 
Sbjct: 139 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA 198

Query: 436 ESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM-HGGA 484
             G  +  ++L+   A+ +     +  P  IA+   +  I R+L      
Sbjct: 199 REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  185 bits (473), Expect = 2e-55
 Identities = 60/274 (21%), Positives = 99/274 (36%), Gaps = 42/274 (15%)

Query: 167 DSADAQGQTLLHIA-------------IAQRRPDIVQLLLEFGPDVE-SQGRCGCSTPLE 212
           +     G T L IA               +  P ++   +  G  +     R G  T L 
Sbjct: 4   NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE-TALH 62

Query: 213 AAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGA-NVNALTK 271
            AA    +   + LL   A     +     P+H A+      V ++L+   A +++A   
Sbjct: 63  LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122

Query: 272 DGNTALHLAVEDRRRDCARLLLANGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQK 329
           DG T L LA           L+ + A  D+ NA D  G + LH  A++       +LL+ 
Sbjct: 123 DGTTPLILAARLAVEGMLEDLINSHA--DV-NAVDDLGKSALHWAAAVNNVDAAVVLLKN 179

Query: 330 GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAING 389
           GANK ++N   +T                      L +AAR+G   T + L++  A  + 
Sbjct: 180 GANKDMQNNREETP---------------------LFLAAREGSYETAKVLLDHFANRDI 218

Query: 390 KDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
            D         A  +   ++VR+L  +       
Sbjct: 219 TDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  182 bits (464), Expect = 4e-54
 Identities = 61/292 (20%), Positives = 92/292 (31%), Gaps = 94/292 (32%)

Query: 164 NPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIV 223
           +  +  D  G+T LH+A    R D  + LLE   D   Q   G  TPL            
Sbjct: 48  SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPL------------ 94

Query: 224 ELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGA-NVNALTKDGNTALHLAVE 282
                                H A+      V ++L+   A +++A   DG T L LA  
Sbjct: 95  ---------------------HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133

Query: 283 DRRRDCARLLLANGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSG 340
                    L+ + A  D+ NA D  G + LH  A++       +LL+ GANK ++N   
Sbjct: 134 LAVEGMLEDLINSHA--DV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 190

Query: 341 KTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHR 400
           +T                                                 L        
Sbjct: 191 ETP------------------------------------------------LF------L 196

Query: 401 ASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGAD 452
           A+ +G  E  ++L+D   + D  D         A E  H D+  LL  +   
Sbjct: 197 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  107 bits (269), Expect = 2e-26
 Identities = 33/137 (24%), Positives = 49/137 (35%), Gaps = 1/137 (0%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           D+    G T L +A       +++ L+    DV +    G  + L  AAA        +L
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAVVL 176

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
           L   A+ +        P+ LA R G  E  K+LL   AN +           +A E    
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 236

Query: 287 DCARLLLANGARPDIRN 303
           D  RLL          +
Sbjct: 237 DIVRLLDLEHHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 97.9 bits (245), Expect = 3e-23
 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 26/119 (21%)

Query: 387 INGKDLHGWTALHRASFKGK-------------IEVVRMLIDKGIDV-DAKDEDGYTALH 432
           +N +   G+T L  AS  G                V+   I +G  + +  D  G TALH
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62

Query: 433 CAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA------GISRILMHGGAT 485
            A     +D  + L++  AD   + +   +P      LH A      G+ +IL+   AT
Sbjct: 63  LAARYSRSDAAKRLLEASADANIQDNMGRTP------LHAAVSADAQGVFQILIRNRAT 115

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 59.4 bits (145), Expect = 4e-10
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 20/70 (28%)

Query: 418 IDVDAKDEDGYTALHCAVESG-------------HTDVTELLVKKGADVEARTSKN-VSP 463
           +DV+ +  DG+T L  A  SG                V    + +GA +  +T +   + 
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 464 MQIAECLHYA 473
                 LH A
Sbjct: 61  ------LHLA 64

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  213 bits (545), Expect = 3e-66
 Identities = 62/238 (26%), Positives = 97/238 (40%), Gaps = 34/238 (14%)

Query: 243 PIHLALRGGHL-EVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDI 301
           P+H A       +V +LL  K + +    +DG   LH +V  +  +    LL+     ++
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 302 RNARD--GDTPLHITASLGYEQMVKLLLQK--GANKYIRNKSGKTAYDVAAECGHSRLFD 357
            +  D  G TP HI  S+G  ++VK L  +    +       G T               
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC-------------- 110

Query: 358 ALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKG 417
                  L +A  K      Q LIE GA++  KD      LHRA+  G ++++ +L   G
Sbjct: 111 -------LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163

Query: 418 I-DVDAKDEDGYTALHCAVESGHTDVTELLV-KKGADVEARTSKNVSPMQIAECLHYA 473
              V+ +D+ G+T L  A+  GH D   LLV K GA+ +   +K             A
Sbjct: 164 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA------EDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  199 bits (508), Expect = 7e-61
 Identities = 56/249 (22%), Positives = 100/249 (40%), Gaps = 33/249 (13%)

Query: 208 STPLEAAAAAGE-ALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANV 266
           + PL  A    E   + ELL ++ +   + +     P+H ++     E+   LL K  NV
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62

Query: 267 NA---LTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARD--GDTPLHITASLGYEQ 321
           N        G T  H+A      +  + L     +PD+ N     G T LH+     + +
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFE 121

Query: 322 MVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLI 381
           + + L++ GA+  I++K  +                       L  AA  G ++ ++ L 
Sbjct: 122 VSQFLIENGASVRIKDKFNQIP---------------------LHRAASVGSLKLIELLC 160

Query: 382 EAGAA-INGKDLHGWTALHRASFKGKIEVVRMLIDK-GIDVDAKDEDGYTALHCAVESGH 439
             G + +N +D  GWT L  A  +G  +   +L++K G + D  D  G  A   A+   +
Sbjct: 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---N 217

Query: 440 TDVTELLVK 448
             V +  + 
Sbjct: 218 EQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  149 bits (380), Expect = 3e-42
 Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 9/190 (4%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCS--TPLEAAAAAGEALIVE 224
              D  G+  LH +++ +  +I   LL    +V        S  TP   A + G   +V+
Sbjct: 30  LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVK 89

Query: 225 LLLARKASTERSETSTWG--PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVE 282
            L  R    + ++ +  G   +HLA+     EV + L+  GA+V    K     LH A  
Sbjct: 90  SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149

Query: 283 DRRRDCARLLLANGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQK-GANKYIRNKS 339
                   LL   G    + N +D  G TPL    + G+     LL++K GA   + +  
Sbjct: 150 VGSLKLIELLCGLGKS-AV-NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207

Query: 340 GKTAYDVAAE 349
           G  A DVA  
Sbjct: 208 GAKAEDVALN 217

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  212 bits (541), Expect = 1e-65
 Identities = 55/250 (22%), Positives = 99/250 (39%), Gaps = 37/250 (14%)

Query: 229 RKASTERSETSTWGPIHLALRGGH----LEVLKLLLIKGANVNALTKDGNTALHLAVEDR 284
           ++  TE  ++     +HLA+        +EV++ +    A +N       T LHLAV   
Sbjct: 1   KQQLTEDGDS----FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN 56

Query: 285 RRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYI------RNK 338
           + + A  LL  G  P++R+   G+TPLH+    G    V +L Q     ++       N 
Sbjct: 57  QPEIAEALLGAGCDPELRD-FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY 115

Query: 339 SGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKD-LHGWTA 397
           +G T                      L +A+  G +  ++ L+  GA +N ++  +G TA
Sbjct: 116 NGHTC---------------------LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 154

Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
           LH A      ++V +L+  G DV+     GY+          T + + L +   +     
Sbjct: 155 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQML 214

Query: 458 SKNVSPMQIA 467
            ++       
Sbjct: 215 PESEDEESYD 224

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  203 bits (519), Expect = 2e-62
 Identities = 54/285 (18%), Positives = 93/285 (32%), Gaps = 65/285 (22%)

Query: 170 DAQGQTLLHIAI----AQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVEL 225
              G + LH+AI         ++++ +      +  Q      TPL              
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPL-------------- 49

Query: 226 LLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRR 285
                              HLA+     E+ + LL  G +       GNT LHLA E   
Sbjct: 50  -------------------HLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGC 90

Query: 286 RDCARLLLANGARPDIR---NARD--GDTPLHITASLGYEQMVKLLLQKGANKYIR-NKS 339
                +L  +   P +     A +  G T LH+ +  GY  +V+LL+  GA+   +   +
Sbjct: 91  LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN 150

Query: 340 GKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALH 399
           G+TA                     L +A        +  L++ GA +N     G++   
Sbjct: 151 GRTA---------------------LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ 189

Query: 400 RASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTE 444
               +    + + L    ++      +         ES  T+ TE
Sbjct: 190 LTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  196 bits (501), Expect = 1e-59
 Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 33/228 (14%)

Query: 268 ALTKDGNTALHLAVE----DRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMV 323
            LT+DG++ LHLA+         +  R +  + A  + +N     TPLH+       ++ 
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN-NLQQTPLHLAVITNQPEIA 61

Query: 324 KLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEA 383
           + LL  G +  +R+  G T                      L +A  +G + ++  L ++
Sbjct: 62  EALLGAGCDPELRDFRGNTP---------------------LHLACEQGCLASVGVLTQS 100

Query: 384 GA------AINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE-DGYTALHCAVE 436
                    +   + +G T LH AS  G + +V +L+  G DV+A++  +G TALH AV+
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 160

Query: 437 SGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
             + D+  LL+K GADV   T +  SP Q+        I + L     
Sbjct: 161 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 208

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  158 bits (403), Expect = 2e-45
 Identities = 54/193 (27%), Positives = 82/193 (42%), Gaps = 9/193 (4%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           +  +   QT LH+A+   +P+I + LL  G D E +   G  TPL  A   G    V +L
Sbjct: 39  NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGN-TPLHLACEQGCLASVGVL 97

Query: 227 LARKASTERS----ETSTWG--PIHLALRGGHLEVLKLLLIKGANVNALTK-DGNTALHL 279
                +         T+  G   +HLA   G+L +++LL+  GA+VNA    +G TALHL
Sbjct: 98  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 157

Query: 280 AVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKS 339
           AV+ +  D   LLL  GA  +      G +P  +T      ++ + L Q           
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRVT-YQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE 216

Query: 340 GKTAYDVAAECGH 352
            +       E   
Sbjct: 217 SEDEESYDTESEF 229

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  101 bits (255), Expect = 9e-25
 Identities = 30/157 (19%), Positives = 52/157 (33%), Gaps = 34/157 (21%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
            + +  G T LH+A       IV+LL+  G DV +Q  C   T L               
Sbjct: 111 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL--------------- 155

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
                             HLA+   + +++ LLL  GA+VN +T  G +   L       
Sbjct: 156 ------------------HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST 197

Query: 287 DCARLLLANGARPDIRNARDGDTPLHITASLGYEQMV 323
              + L       +++   + +          + +  
Sbjct: 198 RIQQQLGQLTL-ENLQMLPESEDEESYDTESEFTEFT 233

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  206 bits (526), Expect = 1e-63
 Identities = 41/234 (17%), Positives = 78/234 (33%), Gaps = 31/234 (13%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIR 302
            +  AL          L I+  ++  +T   +T              R  L        +
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTS-----KGRTGLIPSNYVAEQ 69

Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLG 362
                D PLH  A  G    ++  L         +K+G TA                   
Sbjct: 70  A-ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTA------------------- 109

Query: 363 DSLCVAARKGEVRTMQRLI-EAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVD 421
             L  A   G    ++ L  +    +N ++  G TALH A++KG  ++V++L+ KG   D
Sbjct: 110 --LYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167

Query: 422 AKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAEC---LHY 472
            ++ +   A   A  +    + +      A      +++    + ++     H+
Sbjct: 168 LRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHHH 221

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  184 bits (470), Expect = 2e-55
 Identities = 52/243 (21%), Positives = 81/243 (33%), Gaps = 29/243 (11%)

Query: 164 NPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIV 223
            P       GQ  +  A+    P     L     D+         T      + G   ++
Sbjct: 3   KPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSD-TNWWKGTSKGRTGLI 61

Query: 224 ELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVED 283
                 + +          P+H A + G+L  L+  L     VN L K G+TAL+ A   
Sbjct: 62  PSNYVAEQAESI-----DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG 116

Query: 284 RRRDCARLLLAN-GARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKT 342
             +D   +L        + +N + GDT LH  A  GY  +V+LLL KGA   +RN   K 
Sbjct: 117 GHKDIVEMLFTQPNIELNQQN-KLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKL 175

Query: 343 AYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRAS 402
           A+D+A     +     LK                        A     +   +     + 
Sbjct: 176 AFDMATNAACA---SLLKK------------------KQGTDAVRTLSNAEDYLDDEDSD 214

Query: 403 FKG 405
            + 
Sbjct: 215 LEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  175 bits (445), Expect = 1e-51
 Identities = 44/232 (18%), Positives = 78/232 (33%), Gaps = 31/232 (13%)

Query: 267 NALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLL 326
               K G   +  A+          L               DT      S G     +  
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITD-MSDTNWWKGTSKG-----RTG 59

Query: 327 LQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAA 386
           L        + +S                         L  AA++G +  ++  ++    
Sbjct: 60  LIPSNYVAEQAESIDNP---------------------LHEAAKRGNLSWLRECLDNRVG 98

Query: 387 INGKDLHGWTALHRASFKGKIEVVRMLIDK-GIDVDAKDEDGYTALHCAVESGHTDVTEL 445
           +NG D  G TAL+ A   G  ++V ML  +  I+++ +++ G TALH A   G+ D+ +L
Sbjct: 99  VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158

Query: 446 LVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGAT---KDGIQQTNL 494
           L+ KGA  + R  +      +A     A + +      A     +     + 
Sbjct: 159 LLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  144 bits (366), Expect = 2e-40
 Identities = 26/178 (14%), Positives = 55/178 (30%), Gaps = 33/178 (18%)

Query: 297 ARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLF 356
           ++P  +  + G   +         +    L  +  +         T +      G +   
Sbjct: 2   SKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRT--- 58

Query: 357 DALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDK 416
                                   +     +  +       LH A+ +G +  +R  +D 
Sbjct: 59  -----------------------GLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDN 95

Query: 417 GIDVDAKDEDGYTALHCAVESGHTDVTELLV-KKGADVEARTSKNVSPMQIAECLHYA 473
            + V+  D+ G TAL+ A   GH D+ E+L  +   ++  +     +       LH A
Sbjct: 96  RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTA------LHAA 147

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 1/87 (1%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           +  +  G T LH A  +   DIVQLLL  G   + +         + A  A  A +++  
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK-LAFDMATNAACASLLKKK 192

Query: 227 LARKASTERSETSTWGPIHLALRGGHL 253
               A    S    +     +    H 
Sbjct: 193 QGTDAVRTLSNAEDYLDDEDSDLEHHH 219

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  203 bits (519), Expect = 9e-63
 Identities = 49/213 (23%), Positives = 99/213 (46%), Gaps = 29/213 (13%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIR 302
            +  A +    +V ++L      V+ +  +GNT L++AV +   + A+ L+  GA  +++
Sbjct: 9   LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68

Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGA-NKYIRNKSGKTAYDVAAECGHSRLFDALKL 361
           N    D+P     + G  +++  +L+    +    N+ G  A                  
Sbjct: 69  N-SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNA------------------ 109

Query: 362 GDSLCVAARKGEVRTMQRLIEAGAA-INGKDLHGWTALHRA-----SFKGKIEVVRMLID 415
              L  AA KG +  ++ L+E G   I+ ++  G+TAL  A       +   ++V++L++
Sbjct: 110 ---LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166

Query: 416 KGIDVDAKDEDGYTALHCAVESGHTDVTELLVK 448
            G D   KD  G TA+  A + G+T+++++L +
Sbjct: 167 NGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  183 bits (468), Expect = 3e-55
 Identities = 52/217 (23%), Positives = 96/217 (44%), Gaps = 29/217 (13%)

Query: 270 TKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQK 329
           T +    L  A +   +    +L     + D  +  +G+TPL+I       ++ K L+ +
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVD-TEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 330 GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAA-IN 388
           GA+  ++N    + Y  A   G +   + L                    +++     +N
Sbjct: 62  GADINLQNSISDSPYLYAGAQGRT---EILAY------------------MLKHATPDLN 100

Query: 389 GKDLHGWTALHRASFKGKIEVVRMLIDKGI-DVDAKDEDGYTALHCAV-----ESGHTDV 442
             + +G  AL  A+ KG I+ V++L++ G  D+D +++ GYTAL  AV        + D+
Sbjct: 101 KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160

Query: 443 TELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
            +LL++ GAD   + +   + M  A    Y  IS+IL
Sbjct: 161 VKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  155 bits (394), Expect = 1e-44
 Identities = 31/179 (17%), Positives = 62/179 (34%), Gaps = 29/179 (16%)

Query: 306 DGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSL 365
           +    L        +++ ++L          +  G T                      L
Sbjct: 5   EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTP---------------------L 43

Query: 366 CVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKG-IDVDAKD 424
            +A    ++   + LI+ GA IN ++    +    A  +G+ E++  ++     D++  +
Sbjct: 44  NIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHN 103

Query: 425 EDGYTALHCAVESGHTDVTELLVKKG-ADVEARTSKNVSPMQIAECLHYAGISRILMHG 482
             G  AL  A E GH D  +LL++ G  D++ +     +       L  A   R     
Sbjct: 104 RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTA------LIEAVGLREGNQL 156

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  132 bits (334), Expect = 5e-36
 Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 17/173 (9%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           D  D +G T L+IA+     +I + L++ G D+  Q      +P   A A G   I+  +
Sbjct: 33  DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISD-SPYLYAGAQGRTEILAYM 91

Query: 227 LARKAS-----TERSETSTWGPIHLALRGGHLEVLKLLLIKG-ANVNALTKDGNTALHLA 280
           L                     +  A   GH++ +KLLL  G  +++     G TAL  A
Sbjct: 92  LKHATPDLNKHNRYGGN----ALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEA 147

Query: 281 VEDRRR-----DCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQ 328
           V  R       D  +LL+ NGA   I++   G T +      GY ++ K+L Q
Sbjct: 148 VGLREGNQLYQDIVKLLMENGADQSIKD-NSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  126 bits (319), Expect = 6e-34
 Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 28/140 (20%)

Query: 335 IRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHG 394
           ++                            L  A ++   +  + L +    ++  D  G
Sbjct: 1   MKTYEVGAL---------------------LEAANQRDTKKVKEILQDTTYQVDEVDTEG 39

Query: 395 WTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGA-DV 453
            T L+ A     IE+ + LID+G D++ ++    +    A   G T++   ++K    D+
Sbjct: 40  NTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL 99

Query: 454 EARTSKNVSPMQIAECLHYA 473
                   +       L  A
Sbjct: 100 NKHNRYGGNA------LIPA 113

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 59.4 bits (145), Expect = 2e-10
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHG 482
           K  +    L  A +     V E+L      V+   ++  +P+ IA   +   I++ L+  
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 483 GA---TKDGIQQT 492
           GA    ++ I  +
Sbjct: 62  GADINLQNSISDS 74

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  190 bits (485), Expect = 3e-58
 Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 22/186 (11%)

Query: 272 DGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGA 331
             + ++H              +      +  +  +G TPL   A+ G   +V+ LLQ GA
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTD-EEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 332 NKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKD 391
           +  +  K  ++A                     L +A  KG    ++ L++ G  +N  D
Sbjct: 61  DPQLLGKGRESA---------------------LSLACSKGYTDIVKMLLDCGVDVNEYD 99

Query: 392 LHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGA 451
            +G T L  A     ++ V+ML++ G D   + + GY ++  AV  G+  V +++     
Sbjct: 100 WNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159

Query: 452 DVEART 457
            +    
Sbjct: 160 KLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  168 bits (429), Expect = 5e-50
 Identities = 41/187 (21%), Positives = 74/187 (39%), Gaps = 26/187 (13%)

Query: 306 DGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSL 365
                +H  A+ G    +   +++       ++ G T                      L
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTP---------------------L 40

Query: 366 CVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE 425
             AA  G++  ++ L++ GA          +AL  A  KG  ++V+ML+D G+DV+  D 
Sbjct: 41  MWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDW 100

Query: 426 DGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA- 484
           +G T L  AV   H    ++L++ GAD    T    + M +A  L Y  + +++      
Sbjct: 101 NGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160

Query: 485 ----TKD 487
                K+
Sbjct: 161 LLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  151 bits (384), Expect = 2e-43
 Identities = 41/184 (22%), Positives = 70/184 (38%), Gaps = 22/184 (11%)

Query: 208 STPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVN 267
           S  +   AA GE L +   + ++     ++   + P+  A   G + V++ LL  GA+  
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63

Query: 268 ALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLL 327
            L K   +AL LA      D  ++LL  G   +  +  +G TPL       + + VK+LL
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD-WNGGTPLLYAVHGNHVKCVKMLL 122

Query: 328 QKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAI 387
           + GA+  I   SG  + D+A   G+                         Q +      +
Sbjct: 123 ESGADPTIETDSGYNSMDLAVALGY---------------------RSVQQVIESHLLKL 161

Query: 388 NGKD 391
               
Sbjct: 162 LQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  129 bits (327), Expect = 2e-35
 Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 35/172 (20%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           +  D +G T L  A A  +  +V+ LL+ G D +  G+    + L               
Sbjct: 30  NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE-SAL--------------- 73

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
                              LA   G+ +++K+LL  G +VN    +G T L  AV     
Sbjct: 74  ------------------SLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHV 115

Query: 287 DCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNK 338
            C ++LL +GA P I     G   + +  +LGY  + +++           K
Sbjct: 116 KCVKMLLESGADPTIET-DSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 89.8 bits (224), Expect = 3e-21
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
                  ++ L +A ++   DIV++LL+ G DV      G  TPL  A        V++L
Sbjct: 63  QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGG-TPLLYAVHGNHVKCVKML 121

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKD 272
           L   A       S +  + LA+  G+  V +++      +    K+
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  188 bits (480), Expect = 3e-57
 Identities = 49/212 (23%), Positives = 78/212 (36%), Gaps = 34/212 (16%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIR 302
              +       + L  L       N       T L +A      +    L+ N     + 
Sbjct: 11  VEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLVENFD--KL- 61

Query: 303 NARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
             +D  G T L          + + LL KG+N   ++ SGKT                  
Sbjct: 62  EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTP----------------- 104

Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
               L  +   G       L+E GA +N ++L G T L  AS  G+ E+V+ L++ G D+
Sbjct: 105 ----LMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI 160

Query: 421 DAKDEDGYTALHCAVESGHTDVTELL--VKKG 450
            A+D  G TA   A   G  +V ++   V++ 
Sbjct: 161 SARDLTGLTAEASARIFGRQEVIKIFTEVRRA 192

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  181 bits (462), Expect = 1e-54
 Identities = 45/213 (21%), Positives = 83/213 (38%), Gaps = 41/213 (19%)

Query: 263 GANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARD--GDTPLHITASLGYE 320
           G++++   K+G     +  E         L          N RD    TPL +   LG E
Sbjct: 1   GSHMD---KNGEIVEKIKDEKSINQNLDFLR---------NYRDSYNRTPLMVACMLGME 48

Query: 321 QMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRL 380
             +  L++       ++  G TA                     L  A +   +   ++L
Sbjct: 49  NAIDKLVENFDKLEDKDIEGSTA---------------------LIWAVKNNRLGIAEKL 87

Query: 381 IEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHT 440
           +  G+ +N KD  G T L  +   G  E+   L++ G +V+ ++ +G T L  A + G +
Sbjct: 88  LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147

Query: 441 DVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
           ++ + L++ GAD+ AR    ++          A
Sbjct: 148 EIVKKLLELGADISARDLTGLTA------EASA 174

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  140 bits (355), Expect = 4e-39
 Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 39/185 (21%)

Query: 170 DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLAR 229
           D+  +T L +A      + +  L+E    +E +   G  T L                  
Sbjct: 32  DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGS-TAL------------------ 72

Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCA 289
                            A++   L + + LL KG+NVN     G T L  ++     + +
Sbjct: 73  ---------------IWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117

Query: 290 RLLLANGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVA 347
             LL +GA  ++ N R+  G+TPL + +  G  ++VK LL+ GA+   R+ +G TA   A
Sbjct: 118 YFLLEHGA--NV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASA 174

Query: 348 AECGH 352
              G 
Sbjct: 175 RIFGR 179

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 48.9 bits (118), Expect = 6e-07
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 170 DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLL-A 228
           + +G+T L +A    R +IV+ LLE G D+ ++   G  T   +A   G   ++++    
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGL-TAEASARIFGRQEVIKIFTEV 189

Query: 229 RKA 231
           R+A
Sbjct: 190 RRA 192

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  187 bits (478), Expect = 4e-57
 Identities = 61/192 (31%), Positives = 102/192 (53%), Gaps = 27/192 (14%)

Query: 261 IKGANVNALT-KDGNTALHLAVEDRRRDCARLLLANGARPDIRNARD--GDTPLHITASL 317
           ++G++ +     D    L  A    R D  R+L+ANGA  D+ NA D  G TPLH+ A  
Sbjct: 1   MRGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGA--DV-NAEDASGWTPLHLAAFN 57

Query: 318 GYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTM 377
           G+ ++V++LL+ GA+    + +G T                      L +AA  G +  +
Sbjct: 58  GHLEIVEVLLKNGADVNAVDHAGMTP---------------------LRLAALFGHLEIV 96

Query: 378 QRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVES 437
           + L++ GA +N  D+ G T LH A+  G +E+V +L+  G DV+A+D+ G TA   ++++
Sbjct: 97  EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDN 156

Query: 438 GHTDVTELLVKK 449
           G+ D+ E+L K 
Sbjct: 157 GNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  171 bits (436), Expect = 4e-51
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 27/178 (15%)

Query: 296 GARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRL 355
           G+     +  D    L   A  G +  V++L+  GA+    + SG T             
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTP------------ 50

Query: 356 FDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLID 415
                    L +AA  G +  ++ L++ GA +N  D  G T L  A+  G +E+V +L+ 
Sbjct: 51  ---------LHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK 101

Query: 416 KGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
            G DV+A D +G+T LH A   GH ++ E+L+K GADV A+     +          +
Sbjct: 102 NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA------FDIS 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  138 bits (350), Expect = 1e-38
 Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 39/187 (20%)

Query: 168 SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLL 227
              +     L  A    R D V++L+  G DV ++   G  TPL                
Sbjct: 9   HHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGW-TPL---------------- 51

Query: 228 ARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRD 287
                            HLA   GHLE++++LL  GA+VNA+   G T L LA      +
Sbjct: 52  -----------------HLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLE 94

Query: 288 CARLLLANGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYD 345
              +LL NGA  D+ NA D  G TPLH+ A  G+ ++V++LL+ GA+   ++K GKTA+D
Sbjct: 95  IVEVLLKNGA--DV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFD 151

Query: 346 VAAECGH 352
           ++ + G+
Sbjct: 152 ISIDNGN 158

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  105 bits (266), Expect = 7e-27
 Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 1/127 (0%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           ++ DA G T LH+A      +IV++LL+ G DV +    G  TPL  AA  G   IVE+L
Sbjct: 41  NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGM-TPLRLAALFGHLEIVEVL 99

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
           L   A    ++     P+HLA   GHLE++++LL  GA+VNA  K G TA  +++++   
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159

Query: 287 DCARLLL 293
           D A +L 
Sbjct: 160 DLAEILQ 166

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  187 bits (478), Expect = 3e-56
 Identities = 51/238 (21%), Positives = 83/238 (34%), Gaps = 19/238 (7%)

Query: 209 TPLEAAAAAGEALIVELLLARKAST-ERSETSTWGPIHLALRGGHLEVLKLLLIKGANVN 267
                    G +          A      ET    P   A R    + L  L ++  +V+
Sbjct: 17  MEYLIEWKDGHSPSWVPSSYIAADVVSEYET----PWWTAARKADEQALSQL-LEDRDVD 71

Query: 268 ALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLL 327
           A+ ++G TAL          C RLL   GA  D R+ R G T LH+ A     ++V+ L+
Sbjct: 72  AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131

Query: 328 QKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG--- 384
           + GA+  + ++ G TA ++A E   +           +    R G  + +  L       
Sbjct: 132 ELGADIEVEDERGLTALELAREILKTTPKGNP-----MQFGRRIGLEKVINVLEGQVFEY 186

Query: 385 ---AAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGH 439
                I  K   G    +   +K   +   +      +  AKD +    L  AV    
Sbjct: 187 AEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  176 bits (448), Expect = 8e-52
 Identities = 52/225 (23%), Positives = 89/225 (39%), Gaps = 30/225 (13%)

Query: 264 ANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMV 323
              +    +G     +  +D             A  D+ +  + +TP    A    EQ +
Sbjct: 6   IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA--DVVS--EYETPWWTAARKADEQAL 61

Query: 324 KLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEA 383
             LL+   +    +++G+TA                     L   A  G  + ++ L EA
Sbjct: 62  SQLLE-DRDVDAVDENGRTA---------------------LLFVAGLGSDKCVRLLAEA 99

Query: 384 GAAINGKDLH-GWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDV 442
           GA ++ +D+  G TALH A+   + EVV  L++ G D++ +DE G TAL  A E   T  
Sbjct: 100 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP 159

Query: 443 TELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKD 487
               ++ G  +     + V  +   +   YA +  I+   G  KD
Sbjct: 160 KGNPMQFGRRIGL---EKVINVLEGQVFEYAEVDEIVEKRGKGKD 201

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  169 bits (431), Expect = 2e-49
 Identities = 46/234 (19%), Positives = 79/234 (33%), Gaps = 35/234 (14%)

Query: 223 VELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVE 282
           V  ++  + + E           +  + GH           A+V +   +  T    A  
Sbjct: 3   VNKIIGSRTAGE-----GAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAAR 54

Query: 283 DRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRN-KSGK 341
                    LL      D  +  +G T L   A LG ++ V+LL + GA+   R+ + G 
Sbjct: 55  KADEQALSQLLE-DRDVDAVD-ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL 112

Query: 342 TAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRA 401
           TA                     L +AA       ++ L+E GA I  +D  G TAL  A
Sbjct: 113 TA---------------------LHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151

Query: 402 SFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEA 455
               K       +  G  +  +       +       + +V E++ K+G   + 
Sbjct: 152 REILKTTPKGNPMQFGRRIGLEK---VINVLEGQVFEYAEVDEIVEKRGKGKDV 202

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  151 bits (383), Expect = 2e-42
 Identities = 44/205 (21%), Positives = 77/205 (37%), Gaps = 32/205 (15%)

Query: 291 LLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAEC 350
            ++ +      R A +G     I    G+           A+        +T        
Sbjct: 5   KIIGS------RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETP------- 48

Query: 351 GHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVV 410
                            AARK + + + +L+E    ++  D +G TAL   +  G  + V
Sbjct: 49  --------------WWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCV 93

Query: 411 RMLIDKGIDVDAKD-EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAEC 469
           R+L + G D+D +D   G TALH A      +V E LV+ GAD+E    + ++ +++A  
Sbjct: 94  RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153

Query: 470 LHYAGISRILMHGGATKDGIQQTNL 494
           +         M  G      +  N+
Sbjct: 154 ILKTTPKGNPMQFGRRIGLEKVINV 178

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  124 bits (314), Expect = 9e-33
 Identities = 41/241 (17%), Positives = 67/241 (27%), Gaps = 68/241 (28%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           D+ D  G+T L           V+LL E G D++ +   G  T L               
Sbjct: 71  DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL--------------- 115

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
                             H+A      EV++ L+  GA++    + G TAL LA E  + 
Sbjct: 116 ------------------HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT 157

Query: 287 DCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
                 +  G R  +         +       Y ++ +++ ++G         GK     
Sbjct: 158 TPKGNPMQFGRRIGLEKV----INVLEGQVFEYAEVDEIVEKRGK--------GKDV--- 202

Query: 347 AAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGK 406
                               +   K             A    KD      L  A  +  
Sbjct: 203 ------------------EYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAESV 242

Query: 407 I 407
           I
Sbjct: 243 I 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 79.6 bits (197), Expect = 5e-17
 Identities = 12/91 (13%), Positives = 20/91 (21%), Gaps = 10/91 (10%)

Query: 383 AGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDV 442
                +     G          G             DV ++ E   T    A        
Sbjct: 4   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQA 60

Query: 443 TELLVKKGADVEARTSKNVSPMQIAECLHYA 473
              L+ +  DV+A      +       L + 
Sbjct: 61  LSQLL-EDRDVDAVDENGRTA------LLFV 84

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  183 bits (467), Expect = 1e-55
 Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 23/188 (12%)

Query: 243 PIHLALRGGHLEVLKLLLIKGAN-VNALTKDGNTALHLAVEDRRRDCARLLLANGARPDI 301
            IH     G L+ LK  L KG N VN   + G T L  A      +  R LL  GA P I
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 302 RNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKL 361
              ++ ++ L + ++ GY  +V LLL++  +  I + +G T                   
Sbjct: 65  LA-KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTP------------------ 105

Query: 362 GDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVD 421
              L  A R   V+ ++ L+  GA +  +   G+T +  A   G  +V +++ +  + + 
Sbjct: 106 ---LLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF 162

Query: 422 AKDEDGYT 429
             +     
Sbjct: 163 QSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  163 bits (415), Expect = 7e-48
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 27/188 (14%)

Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKY-IRNKSGKTAYDVAAECGHSRLFDALKLGDSL 365
               +H  A+ G    +K  L+KG N     ++ G T                      L
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTP---------------------L 40

Query: 366 CVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE 425
             A+  GE+ T++ L+E GA  +       +AL  AS  G  ++V +L+++ +D++  D 
Sbjct: 41  IWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDW 100

Query: 426 DGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA- 484
           +G T L  AV   H    E L+ +GAD+        +PM +A  L Y  + +++ +    
Sbjct: 101 NGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK 160

Query: 485 ----TKDG 488
                   
Sbjct: 161 LFQSNLVP 168

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  149 bits (378), Expect = 1e-42
 Identities = 43/224 (19%), Positives = 71/224 (31%), Gaps = 55/224 (24%)

Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKAS 232
               +H   AQ   D ++  L  G ++ ++      TPL                     
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPL--------------------- 40

Query: 233 TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLL 292
                         A   G +E ++ LL  GA+ + L K+  +AL LA      D   LL
Sbjct: 41  ------------IWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88

Query: 293 LANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
           L      +I +  +G TPL       + + V+ LL +GA+      SG T          
Sbjct: 89  LERDVDINIYD-WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTP--------- 138

Query: 353 SRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWT 396
                       + +A   G  +  Q +      +   +L    
Sbjct: 139 ------------MDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  129 bits (327), Expect = 2e-35
 Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 164 NPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIV 223
           N  +  D +G T L  A A    + V+ LLE+G D     +    + L  A+  G   IV
Sbjct: 27  NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKER-ESALSLASTGGYTDIV 85

Query: 224 ELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVED 283
            LLL R       + +   P+  A+RG H++ ++ LL +GA++      G T + LAV  
Sbjct: 86  GLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL 145

Query: 284 RRRDCARLLLANGARPDIRNARDGDTP 310
             R   +++  +  +    N      P
Sbjct: 146 GYRKVQQVIENHILKLFQSN-LVPADP 171

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  183 bits (466), Expect = 1e-54
 Identities = 66/242 (27%), Positives = 108/242 (44%), Gaps = 24/242 (9%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIR 302
             +LA  G   E+ + +L   +      +D  TALH A      +    LL  G   + +
Sbjct: 10  ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69

Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLG 362
           +   G +PLHI AS G +++VK LL KGA+    N++G T                    
Sbjct: 70  D-DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTP------------------- 109

Query: 363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
             L  AA K        L+E GA  + KD +  TA+HRA+ KG +++V +L+      + 
Sbjct: 110 --LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI 167

Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHG 482
           +D +G T LH A +    +  + LV +GA +     +  +P+Q+A+     G+    +  
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAE 225

Query: 483 GA 484
           G 
Sbjct: 226 GE 227

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  183 bits (465), Expect = 1e-54
 Identities = 57/281 (20%), Positives = 105/281 (37%), Gaps = 58/281 (20%)

Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKAS 232
              + ++A + +  ++ + +L          +    T L                     
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSR-TAL--------------------- 44

Query: 233 TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLL 292
                       H A   GH E+++ LL  G  VN     G + LH+A      +  + L
Sbjct: 45  ------------HWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKAL 92

Query: 293 LANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
           L  GA  +  N ++G TPLH  AS    ++  +LL+ GAN   ++    TA   AA  G+
Sbjct: 93  LVKGAHVNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151

Query: 353 SRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRM 412
                                ++ +  L+   A+ N +D  G T LH A  + ++E  + 
Sbjct: 152 ---------------------LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190

Query: 413 LIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADV 453
           L+ +G  +  ++++  T L  A   G   +    + +G + 
Sbjct: 191 LVTQGASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  159 bits (403), Expect = 1e-45
 Identities = 51/237 (21%), Positives = 97/237 (40%), Gaps = 26/237 (10%)

Query: 272 DGNTALHLAVEDRRRDCARLLLANGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQK 329
                 +LA   +  +    +LA+ +        D    T LH   S G+ ++V+ LLQ 
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKS--LA-TRTDQDSRTALHWACSAGHTEIVEFLLQL 62

Query: 330 GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAING 389
           G     ++ +G +                      L +AA  G    ++ L+  GA +N 
Sbjct: 63  GVPVNDKDDAGWSP---------------------LHIAASAGXDEIVKALLVKGAHVNA 101

Query: 390 KDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKK 449
            + +G T LH A+ K + E+  ML++ G + DAKD    TA+H A   G+  +  +L+  
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161

Query: 450 GADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNGKV 506
            A    + ++  +P+ +A        ++ L+  GA+     +     + +  G   +
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGL 218

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  134 bits (339), Expect = 2e-36
 Identities = 60/222 (27%), Positives = 92/222 (41%), Gaps = 25/222 (11%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
              D   +T LH A +    +IV+ LL+ G  V  +   G  +PL  AA+AG   IV+ L
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAGXDEIVKAL 92

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
           L + A       +   P+H A      E+  +LL  GAN +A      TA+H A      
Sbjct: 93  LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152

Query: 287 DCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
               +LL   A  +I++  +G+TPLH+       +  K L+ +GA+ YI NK  KT   V
Sbjct: 153 KMVHILLFYKASTNIQD-TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211

Query: 347 AAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAIN 388
           A                        G +  + + +  G   +
Sbjct: 212 AK-----------------------GGLGLILKRLAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 93.0 bits (231), Expect = 1e-21
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 3/135 (2%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           ++ +  G T LH A ++ R +I  +LLE G + +++      T +  AAA G   +V +L
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-TAMHRAAAKGNLKMVHIL 158

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
           L  KAST   +T    P+HLA     +E  K L+ +GA++    K+  T L +A      
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKG--GL 216

Query: 287 DCARLLLANGARPDI 301
                 LA G    +
Sbjct: 217 GLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 5/51 (9%), Positives = 14/51 (27%), Gaps = 6/51 (11%)

Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
                    + A      ++ E ++   +        + +       LH+A
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTA------LHWA 47

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  180 bits (459), Expect = 2e-54
 Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 24/184 (13%)

Query: 269 LTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQ 328
           + +     L  A      +    LL N    + +N   G T L +   LG  ++ + LL 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQN-GFGRTALQV-MKLGNPEIARRLLL 58

Query: 329 KGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAIN 388
           +GAN  +++++G                        +  AAR G + T+Q L+E  A +N
Sbjct: 59  RGANPDLKDRTGFAV---------------------IHDAARAGFLDTLQTLLEFQADVN 97

Query: 389 GKDLHGWTALHRASFKGKIEVVRMLIDKG-IDVDAKDEDGYTALHCAVESGHTDVTELLV 447
            +D  G   LH A+ +G + VV  L+     +V  ++  G TA   A   G  +V  L+ 
Sbjct: 98  IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157

Query: 448 KKGA 451
             GA
Sbjct: 158 ANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  152 bits (388), Expect = 3e-44
 Identities = 44/169 (26%), Positives = 67/169 (39%), Gaps = 29/169 (17%)

Query: 306 DGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSL 365
                L   A+ G  + +  LLQ   N   +N  G+TA                     L
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTA---------------------L 42

Query: 366 CVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE 425
            V    G     +RL+  GA  + KD  G+  +H A+  G ++ ++ L++   DV+ +D 
Sbjct: 43  QVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN 101

Query: 426 DGYTALHCAVESGHTDVTELLVKKGA-DVEARTSKNVSPMQIAECLHYA 473
           +G   LH A + GH  V E LVK  A +V  R  K  +          A
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA------CDLA 144

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  140 bits (355), Expect = 2e-39
 Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 6/161 (3%)

Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKAS 232
               L  A A+   + +  LL+   +V +Q   G  T L+     G   I   LL R A+
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGR-TALQVMKL-GNPEIARRLLLRGAN 62

Query: 233 TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLL 292
            +  + + +  IH A R G L+ L+ LL   A+VN    +GN  LHLA ++        L
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122

Query: 293 LANGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGA 331
           + + A  ++   R+  GDT   +    G  ++V L+   GA
Sbjct: 123 VKHTA-SNV-GHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 85.5 bits (213), Expect = 8e-20
 Identities = 38/132 (28%), Positives = 49/132 (37%), Gaps = 35/132 (26%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           D  D  G  ++H A      D +Q LLEF  DV  +   G   PL               
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN-LPL--------------- 107

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGA-NVNALTKDGNTALHLAVEDRR 285
                             HLA + GHL V++ L+   A NV      G+TA  LA    R
Sbjct: 108 ------------------HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149

Query: 286 RDCARLLLANGA 297
            +   L+ ANGA
Sbjct: 150 NEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 55.5 bits (135), Expect = 2e-09
 Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 6/50 (12%)

Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
            E     L  A   G  +    L++   +V A+     +       L   
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTA------LQVM 45

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  181 bits (462), Expect = 6e-54
 Identities = 38/216 (17%), Positives = 69/216 (31%), Gaps = 29/216 (13%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIR 302
            +    R    +     +  G  V          L  +  +   D  + ++     P + 
Sbjct: 8   SLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP 66

Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLG 362
           N  +G T LH     G+ ++VK L+Q G N    +  G T    AA C +          
Sbjct: 67  N-DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN---------- 115

Query: 363 DSLCVAARKGEVRTMQRLIEAGAAINGK---DLHGWTALHRASFKGKIEVVRMLIDKGID 419
                      V+  + L+E+GAA+      D+           +G  +  + L      
Sbjct: 116 -----------VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK 164

Query: 420 VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEA 455
           +   ++    AL            EL +K+G  +  
Sbjct: 165 MGIMNKGVIYALWDYEPQND---DELPMKEGDCMTI 197

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  177 bits (450), Expect = 3e-52
 Identities = 40/245 (16%), Positives = 76/245 (31%), Gaps = 37/245 (15%)

Query: 271 KDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKG 330
             G  +L        R      +A+G    ++        L  ++  G   +V+ ++ + 
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHGM--RVKFNPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 331 ANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGK 390
            +  + N  G TA                     L  A   G    ++ L++ G  +N  
Sbjct: 61  DDPSLPNDEGITA---------------------LHNAVCAGHTEIVKFLVQFGVNVNAA 99

Query: 391 DLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG---YTALHCAVESGHTDVTELLV 447
           D  GWT LH A+    ++V + L++ G  V A               +E G+T  ++ L 
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 159

Query: 448 KKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGAT-----KDGIQQTNLRQVSIQFG 502
                +       +  +   E         + M  G       ++   +           
Sbjct: 160 GVQEKMGIMNKGVIYALWDYE---PQNDDELPMKEGDCMTIIHREDEDEIEWWWAR---L 213

Query: 503 NGKVG 507
           N K G
Sbjct: 214 NDKEG 218

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  163 bits (416), Expect = 3e-47
 Identities = 48/202 (23%), Positives = 69/202 (34%), Gaps = 40/202 (19%)

Query: 299 PDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDA 358
           P+I     G   L         +     +  G      N                     
Sbjct: 1   PEI----TGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLAL--------------- 40

Query: 359 LKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGI 418
                 L  ++ +GE   +QR+I      +  +  G TALH A   G  E+V+ L+  G+
Sbjct: 41  ------LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 94

Query: 419 DVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA----- 473
           +V+A D DG+T LHCA    +  V + LV+ GA V A      S MQ A           
Sbjct: 95  NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA---MTYSDMQTAADKCEEMEEGY 151

Query: 474 -GISRILMHGGA-----TKDGI 489
              S+ L           K  I
Sbjct: 152 TQCSQFLYGVQEKMGIMNKGVI 173

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  162 bits (411), Expect = 1e-46
 Identities = 42/245 (17%), Positives = 79/245 (32%), Gaps = 45/245 (18%)

Query: 209 TPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNA 268
             L               +A     + +       +  +   G  ++++ ++ +  + + 
Sbjct: 7   VSLPPGKRTNLRKTGSERIAHGMRVKFNPLP-LALLLDSSLEGEFDLVQRIIYEVDDPSL 65

Query: 269 LTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARD--GDTPLHITASLGYEQMVKLL 326
              +G TALH AV     +  + L+  G   ++ NA D  G TPLH  AS    Q+ K L
Sbjct: 66  PNDEGITALHNAVCAGHTEIVKFLVQFGV--NV-NAADSDGWTPLHCAASCNNVQVCKFL 122

Query: 327 LQKGANKYIRNKS-GKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGA 385
           ++ GA  +    S  +TA D                    C    +G  +  Q L     
Sbjct: 123 VESGAAVFAMTYSDMQTAAD-------------------KCEEMEEGYTQCSQFLYGVQE 163

Query: 386 AINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK----------------DEDGYT 429
            +   +     AL     +   E+    + +G  +                   D++GY 
Sbjct: 164 KMGIMNKGVIYALWDYEPQNDDEL---PMKEGDCMTIIHREDEDEIEWWWARLNDKEGYV 220

Query: 430 ALHCA 434
             +  
Sbjct: 221 PRNLL 225

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  159 bits (405), Expect = 1e-45
 Identities = 47/234 (20%), Positives = 76/234 (32%), Gaps = 16/234 (6%)

Query: 170 DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVE--SQGRCGCSTPLEAAAAAGEALIVELLL 227
           +  GQ  L               +  G  V+            L  ++  GE  +V+ ++
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPL----ALLLDSSLEGEFDLVQRII 57

Query: 228 ARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRD 287
                           +H A+  GH E++K L+  G NVNA   DG T LH A       
Sbjct: 58  YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ 117

Query: 288 CARLLLANGARPDIRNARDGD--TPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYD 345
             + L+ +GA        D             GY Q  + L        I NK    A  
Sbjct: 118 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALW 177

Query: 346 VAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALH 399
                    L   +K GD + +   + +   ++      A +N K+  G+   +
Sbjct: 178 DYEPQNDDEL--PMKEGDCMTI-IHREDEDEIEWWW---ARLNDKE--GYVPRN 223

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  100 bits (251), Expect = 3e-24
 Identities = 36/191 (18%), Positives = 63/191 (32%), Gaps = 43/191 (22%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
              + +G T LH A+     +IV+ L++FG +V +    G  TPL               
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW-TPL--------------- 107

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGN---TALHLAVED 283
                             H A    +++V K L+  GA V A+T             +E+
Sbjct: 108 ------------------HCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE 149

Query: 284 RRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYI--RNKSGK 341
               C++ L     +  I N +     L        +   +L +++G    I  R    +
Sbjct: 150 GYTQCSQFLYGVQEKMGIMN-KGVIYALWDYE---PQNDDELPMKEGDCMTIIHREDEDE 205

Query: 342 TAYDVAAECGH 352
             +  A     
Sbjct: 206 IEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 10/117 (8%), Positives = 25/117 (21%), Gaps = 21/117 (17%)

Query: 164 NPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIV 223
                +D Q        + +      Q L      +    +      L       +    
Sbjct: 130 FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVI-YALWDYEPQNDD--- 185

Query: 224 ELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLA 280
           EL +                    +     + ++    +  +     K+G    +L 
Sbjct: 186 ELPMKEGDCM------------TIIHREDEDEIEWWWARLND-----KEGYVPRNLL 225

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  176 bits (448), Expect = 5e-53
 Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 23/175 (13%)

Query: 272 DGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGA 331
           D    L  A    + D  R+L+ANGA         G +PLH+ A  G+    ++LL+ G 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGA--PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 332 NKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKD 391
           ++  R K  +T                      L +AA +G    ++ L++ GA +N KD
Sbjct: 59  SRDARTKVDRTP---------------------LHMAASEGHANIVEVLLKHGADVNAKD 97

Query: 392 LHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELL 446
           +   TALH A+     EVV +LI  G DV  + +   TA   ++++G+ D+ E+L
Sbjct: 98  MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  157 bits (400), Expect = 4e-46
 Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 32/170 (18%)

Query: 306 DGDTPLHITASLGYEQMVKLLLQKGA--NKYIRNKSGKTAYDVAAECGHSRLFDALKLGD 363
           D    L   A  G +  V++L+  GA       +  G +                     
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT---DWLGTSP-------------------- 37

Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
            L +AA+ G   T + L+ AG + + +     T LH A+ +G   +V +L+  G DV+AK
Sbjct: 38  -LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK 96

Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
           D    TALH A E  H +V ELL+K GADV  ++    +          +
Sbjct: 97  DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA------FDIS 140

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  125 bits (318), Expect = 2e-34
 Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 3/154 (1%)

Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKAS 232
               L  A    + D V++L+  G         G  +PL  AA  G     E+LL    S
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGT-SPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 233 TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLL 292
            +        P+H+A   GH  ++++LL  GA+VNA      TALH A E   ++   LL
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 293 LANGARPDIRNARDGDTPLHITASLGYEQMVKLL 326
           +  GA    ++ +   T   I+   G E + ++L
Sbjct: 120 IKYGADVHTQS-KFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 79.7 bits (198), Expect = 6e-18
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 34/126 (26%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           D+     +T LH+A ++   +IV++LL+ G DV ++      T L               
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM-TAL--------------- 104

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
                             H A    H EV++LL+  GA+V+  +K   TA  +++++   
Sbjct: 105 ------------------HWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE 146

Query: 287 DCARLL 292
           D A +L
Sbjct: 147 DLAEIL 152

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  178 bits (454), Expect = 5e-53
 Identities = 49/250 (19%), Positives = 86/250 (34%), Gaps = 30/250 (12%)

Query: 223 VELLLARKASTERSETSTWGPI---HLALRGGHLEVLKLLLIKGANVNALTKDGNTALHL 279
           +  +L +  S  ++  +   P+     A   G LEV++  + +  + +   ++G TALH 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 280 AVEDRRRDCARLLLANGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRN 337
           A+          L+  GA  ++ N+ D  G TPLH  AS     +   L+Q GA  +   
Sbjct: 61  AICGANYSIVDFLITAGA--NV-NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117

Query: 338 KS-GKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWT 396
            S G TA++                        R+G       L +   ++   +     
Sbjct: 118 LSDGATAFEKCDP-------------------YREGYADCATYLADVEQSMGLMNSGAVY 158

Query: 397 ALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTD-VTELLVKKGADVEA 455
           AL   S     + +     + + V  +D    T    A   G    V          V+ 
Sbjct: 159 ALWDYS-AEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKP 217

Query: 456 RTSKNVSPMQ 465
           + SK      
Sbjct: 218 QRSKVKHHHH 227

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  165 bits (419), Expect = 6e-48
 Identities = 42/249 (16%), Positives = 68/249 (27%), Gaps = 27/249 (10%)

Query: 189 VQLLLEFGPDVESQGRCGCS--TPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHL 246
           ++ +L          R   +    L  AA  GE  +V+  +       +        +H 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARD 306
           A+ G +  ++  L+  GANVN+    G T LH A           L+ +GA        D
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120

Query: 307 GDTPLHITASL--GYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDS 364
           G T          GY      L     +  + N     A                     
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA--------------------- 159

Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVV-RMLIDKGIDVDAK 423
           L   +       +         +  +D    T    A+  G+   V R        V  +
Sbjct: 160 LWDYS-AEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQ 218

Query: 424 DEDGYTALH 432
                   H
Sbjct: 219 RSKVKHHHH 227

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  148 bits (375), Expect = 1e-41
 Identities = 45/213 (21%), Positives = 69/213 (32%), Gaps = 30/213 (14%)

Query: 290 RLLLANGARPDI--RNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVA 347
           R +L     P    R   +    L   A  G  ++V+  +++  +    N+ G TA    
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITA---- 57

Query: 348 AECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKI 407
                            L  A        +  LI AGA +N  D HGWT LH A+     
Sbjct: 58  -----------------LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDT 100

Query: 408 EVVRMLIDKGIDVDAKD-EDGYTALHCAVES--GHTDVTELLVKKGADVEARTSKNVSPM 464
            +   L+  G  + A    DG TA         G+ D    L      +    S  V  +
Sbjct: 101 VICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160

Query: 465 QIAECLHYAGISRILMHGGAT---KDGIQQTNL 494
                     +S        T   +DG ++T+ 
Sbjct: 161 WDYSAEFGDELS-FREGESVTVLRRDGPEETDW 192

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  141 bits (357), Expect = 5e-39
 Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 22/176 (12%)

Query: 323 VKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIE 382
           ++ +L+K  +     ++      +                  L  AA  GE+  +Q+ ++
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVL------------------LLDAALTGELEVVQQAVK 42

Query: 383 AGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDV 442
                +  +  G TALH A       +V  LI  G +V++ D  G+T LHCA     T +
Sbjct: 43  EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVI 102

Query: 443 TELLVKKGADVEARTSKN-VSPMQIAECLH--YAGISRILMHGGATKDGIQQTNLR 495
              LV+ GA + A T  +  +  +  +     YA  +  L        G+  +   
Sbjct: 103 CMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ-SMGLMNSGAV 157

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  115 bits (291), Expect = 9e-30
 Identities = 40/189 (21%), Positives = 54/189 (28%), Gaps = 39/189 (20%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
              + +G T LH AI      IV  L+  G +V S    G  TPL               
Sbjct: 48  SQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGW-TPL--------------- 91

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALT-KDGNTALHLAVEDRR 285
                             H A       +   L+  GA + A T  DG TA       R 
Sbjct: 92  ------------------HCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE 133

Query: 286 --RDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTA 343
              DCA  L        + N       L    S  +   +     +      R+   +T 
Sbjct: 134 GYADCATYLADVEQSMGLMN-SGAVYALWD-YSAEFGDELSFREGESVTVLRRDGPEETD 191

Query: 344 YDVAAECGH 352
           +  AA  G 
Sbjct: 192 WWWAALHGQ 200

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 84.2 bits (209), Expect = 1e-18
 Identities = 28/179 (15%), Positives = 46/179 (25%), Gaps = 38/179 (21%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           +S D+ G T LH A +     I   L++ G  + +      +T  E      E       
Sbjct: 81  NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE------- 133

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
                                   G+ +    L     ++  +      AL     +   
Sbjct: 134 ------------------------GYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD 169

Query: 287 DCARLLLANGARPDIRNARDGD--TPLHITASLGYEQMV-KLLLQKGANKYIRNKSGKT 342
           +   L    G    +   RDG   T     A  G E  V +           +    K 
Sbjct: 170 E---LSFREGESVTV-LRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKH 224

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  176 bits (450), Expect = 6e-53
 Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 29/199 (14%)

Query: 243 PIHLALRGGHLEVLKLLLIKGAN-VNALTKDGNTALHLAVEDRRRDCARLLLANGARPDI 301
            I    R G+   ++L L    N +N     G + LH A  + R     +L+  GAR ++
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67

Query: 302 RNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKL 361
            N R  DTPLH+ AS G+  +V+ LLQ  A+    N+ G                     
Sbjct: 68  MN-RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVP------------------ 108

Query: 362 GDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVD 421
              L  A   G+ +  + L+  GA ++  + +G   + +A    +  +       G +++
Sbjct: 109 ---LHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165

Query: 422 AKDEDGYTALHCAVESGHT 440
                           G T
Sbjct: 166 RIP------YKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  159 bits (404), Expect = 2e-46
 Identities = 43/200 (21%), Positives = 66/200 (33%), Gaps = 28/200 (14%)

Query: 306 DGDTPLHITASLGYEQMVKLLLQKGANKY-IRNKSGKTAYDVAAECGHSRLFDALKLGDS 364
           +    +      G    V+L L    N     +  G +                      
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSP--------------------- 42

Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
           L  A R+G    ++ LI  GA IN  +    T LH A+  G  ++V+ L+    D++A +
Sbjct: 43  LHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN 102

Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
           E G   LH A   G   V E LV  GA V         P+  A+      +       G 
Sbjct: 103 EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162

Query: 485 TKDGIQQTNLRQVSIQFGNG 504
               + +   +     F  G
Sbjct: 163 N---LNRIPYK---DTFWKG 176

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  146 bits (371), Expect = 2e-41
 Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 9/187 (4%)

Query: 169 ADAQGQTLLHIAIAQRRPDIVQLLLEFGP-DVESQGRCGCSTPLEAAAAAGEALIVELLL 227
              +    +     +     V+L L+    D+      G  +PL  A   G + +VE+L+
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGF-SPLHWACREGRSAVVEMLI 59

Query: 228 ARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRD 287
            R A           P+HLA   GH ++++ LL   A++NA+ + GN  LH A    +  
Sbjct: 60  MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ 119

Query: 288 CARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVA 347
            A  L+ANGA   I N + G+ P+    +   E + +   + G N        +  Y   
Sbjct: 120 VAEDLVANGALVSICN-KYGEMPVDKAKAPLRELLRERAEKMGQNL------NRIPYKDT 172

Query: 348 AECGHSR 354
              G +R
Sbjct: 173 FWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 52.8 bits (128), Expect = 2e-08
 Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 7/51 (13%)

Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGA-DVEARTSKNVSPMQIAECLHYA 473
             +    +      G+     L +     D+        SP      LH+A
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSP------LHWA 46

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  176 bits (448), Expect = 7e-53
 Identities = 51/191 (26%), Positives = 79/191 (41%), Gaps = 29/191 (15%)

Query: 263 GANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGD--TPLHITASLGYE 320
           GA  N    + +  L  A +    +  + L    +  +     +G   TPLH  A     
Sbjct: 1   GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQS-VNC-RDIEGRQSTPLHFAAGYNRV 55

Query: 321 QMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRL 380
            +V+ LLQ GA+ + ++K G                        L  A   G     + L
Sbjct: 56  SVVEYLLQHGADVHAKDKGGLVP---------------------LHNACSYGHYEVAELL 94

Query: 381 IEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHT 440
           ++ GA +N  DL  +T LH A+ KGK E+ ++L+  G D   K+ DG T L    + G T
Sbjct: 95  VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDT 153

Query: 441 DVTELLVKKGA 451
           D+ +LL    A
Sbjct: 154 DIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  156 bits (396), Expect = 3e-45
 Identities = 41/169 (24%), Positives = 61/169 (36%), Gaps = 28/169 (16%)

Query: 306 DGDTPLHITASLGYEQMVKLLL-QKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDS 364
           + D  L   A  G  + VK L   +  N         T                      
Sbjct: 7   EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTP--------------------- 45

Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
           L  AA    V  ++ L++ GA ++ KD  G   LH A   G  EV  +L+  G  V+  D
Sbjct: 46  LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 105

Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
              +T LH A   G  ++ +LL++ GAD   +     +P      L   
Sbjct: 106 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP------LDLV 148

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  133 bits (337), Expect = 8e-37
 Identities = 48/163 (29%), Positives = 67/163 (41%), Gaps = 4/163 (2%)

Query: 170 DAQGQTLLHIAIAQRRPDIVQLLLEF-GPDVESQGRCGCSTPLEAAAAAGEALIVELLLA 228
           +++    L  A      + V+ L      +          TPL  AA      +VE LL 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYLLQ 63

Query: 229 RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDC 288
             A     +     P+H A   GH EV +LL+  GA VN       T LH A    + + 
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 123

Query: 289 ARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGA 331
            +LLL +GA P  +N RDG+TPL +    G   +  LL    A
Sbjct: 124 CKLLLQHGADPTKKN-RDGNTPLDL-VKDGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 83.2 bits (207), Expect = 5e-19
 Identities = 32/131 (24%), Positives = 44/131 (33%), Gaps = 35/131 (26%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
            + D  G   LH A +    ++ +LL++ G  V         TPL               
Sbjct: 69  HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF-TPL--------------- 112

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
                             H A   G  E+ KLLL  GA+     +DGNT L L  +    
Sbjct: 113 ------------------HEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG-DT 153

Query: 287 DCARLLLANGA 297
           D   LL  + A
Sbjct: 154 DIQDLLRGDAA 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  173 bits (442), Expect = 9e-52
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 27/196 (13%)

Query: 261 IKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYE 320
           +     +    +G     +  +D             A  D+ +  + +TP    A    E
Sbjct: 2   VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA--DVVS--EYETPWWTAARKADE 57

Query: 321 QMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRL 380
           Q +  LL +  +    +++G+TA                     L   A  G  + ++ L
Sbjct: 58  QALSQLL-EDRDVDAVDENGRTA---------------------LLFVAGLGSDKCVRLL 95

Query: 381 IEAGAAINGKDLH-GWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGH 439
            EAGA ++ +D+  G TALH A+   + EVV  L++ G D++ +DE G TAL  A E   
Sbjct: 96  AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK 155

Query: 440 TDVTELLVKKGADVEA 455
           T      ++ G  +  
Sbjct: 156 TTPKGNPMQFGRRIGL 171

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  156 bits (397), Expect = 3e-45
 Identities = 43/184 (23%), Positives = 71/184 (38%), Gaps = 26/184 (14%)

Query: 302 RNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKL 361
           R A +G     I    G+           A+        +T                   
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETP------------------ 47

Query: 362 GDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVD 421
                 AARK + + + +L+E    ++  D +G TAL   +  G  + VR+L + G D+D
Sbjct: 48  ---WWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103

Query: 422 AKD-EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
            +D   G TALH A      +V E LV+ GAD+E    + ++ +++A  +         M
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 163

Query: 481 HGGA 484
             G 
Sbjct: 164 QFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  154 bits (391), Expect = 2e-44
 Identities = 40/186 (21%), Positives = 62/186 (33%), Gaps = 27/186 (14%)

Query: 240 TWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARP 299
                 +  + GH           A+V +   +  T    A           LL      
Sbjct: 14  GAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLLE-DRDV 69

Query: 300 DIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRN-KSGKTAYDVAAECGHSRLFDA 358
           D  +  +G T L   A LG ++ V+LL + GA+   R+ + G TA               
Sbjct: 70  DAVD-ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTA--------------- 113

Query: 359 LKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGI 418
                 L +AA       ++ L+E GA I  +D  G TAL  A    K       +  G 
Sbjct: 114 ------LHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGR 167

Query: 419 DVDAKD 424
            +  + 
Sbjct: 168 RIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  148 bits (375), Expect = 5e-42
 Identities = 41/176 (23%), Positives = 67/176 (38%), Gaps = 11/176 (6%)

Query: 209 TPLEAAAAAGEALIVELLLARKAST-ERSETSTWGPIHLALRGGHLEVLKLLLIKGANVN 267
                    G +          A      ET    P   A R    + L  L ++  +V+
Sbjct: 16  MEYLIEWKDGHSPSWVPSSYIAADVVSEYET----PWWTAARKADEQALSQL-LEDRDVD 70

Query: 268 ALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLL 327
           A+ ++G TAL          C RLL   GA  D R+ R G T LH+ A     ++V+ L+
Sbjct: 71  AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 130

Query: 328 QKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEA 383
           + GA+  + ++ G TA ++A E   +           +    R G  + +  L   
Sbjct: 131 ELGADIEVEDERGLTALELAREILKTTPKGNP-----MQFGRRIGLEKVINVLEGQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 94.1 bits (235), Expect = 1e-22
 Identities = 33/163 (20%), Positives = 54/163 (33%), Gaps = 51/163 (31%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           D+ D  G+T L           V+LL E G D++ +   G  T L               
Sbjct: 70  DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL--------------- 114

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
                             H+A      EV++ L+  GA++    + G TAL LA E  + 
Sbjct: 115 ------------------HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT 156

Query: 287 DCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQK 329
                 +  G R                  +G E+++ +L  +
Sbjct: 157 TPKGNPMQFGRR------------------IGLEKVINVLEGQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 49.4 bits (119), Expect = 4e-07
 Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 15/73 (20%)

Query: 416 KGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA-- 473
             I       +G        + GH+          ADV +   +  +P         A  
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETP------WWTAAR 53

Query: 474 ----GISRILMHG 482
                    L+  
Sbjct: 54  KADEQALSQLLED 66

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  161 bits (411), Expect = 1e-47
 Identities = 46/177 (25%), Positives = 70/177 (39%), Gaps = 25/177 (14%)

Query: 273 GNTALHLAVEDRRRDC-ARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGA 331
               L  A          RLL      PD  N R G T L +    G   +   LL++GA
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALN-RFGKTALQV-MMFGSTAIALELLKQGA 59

Query: 332 NKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKD 391
           +  +++ SG +                      +  AAR G + T++ L+E GA +N  D
Sbjct: 60  SPNVQDTSGTSP---------------------VHDAARTGFLDTLKVLVEHGADVNVPD 98

Query: 392 LHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVK 448
             G   +H A  +G   VV  L     D+  +D  G T L  A++ G  D+ ++L  
Sbjct: 99  GTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  145 bits (369), Expect = 1e-41
 Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 30/168 (17%)

Query: 307 GDTPLHITASLGYEQMVK-LLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSL 365
               L   A+ G  Q V+ LL ++  +    N+ GKTA  V    G              
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GS------------- 47

Query: 366 CVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE 425
                         L++ GA+ N +D  G + +H A+  G ++ +++L++ G DV+  D 
Sbjct: 48  --------TAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG 99

Query: 426 DGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
            G   +H AV+ GHT V   L    +D+  R ++ ++P      L  A
Sbjct: 100 TGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTP------LELA 140

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  122 bits (308), Expect = 6e-33
 Identities = 46/156 (29%), Positives = 67/156 (42%), Gaps = 5/156 (3%)

Query: 173 GQTLLHIAIAQRRPDIVQLLLE-FGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKA 231
               L  A A+     V+ LL       ++  R G  T L+     G   I   LL + A
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGK-TALQVMMF-GSTAIALELLKQGA 59

Query: 232 STERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARL 291
           S    +TS   P+H A R G L+ LK+L+  GA+VN     G   +HLAV++        
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 292 LLANGARPDIRNARDGDTPLHITASLGYEQMVKLLL 327
           L A  +    R+   G TPL +    G + +V +L 
Sbjct: 120 LAA-ESDLHRRD-ARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 83.2 bits (207), Expect = 4e-19
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 35/127 (27%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           +  D  G + +H A      D +++L+E G DV      G   P+               
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA-LPI--------------- 105

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
                             HLA++ GH  V+   L   ++++     G T L LA++   +
Sbjct: 106 ------------------HLAVQEGHTAVVS-FLAAESDLHRRDARGLTPLELALQRGAQ 146

Query: 287 DCARLLL 293
           D   +L 
Sbjct: 147 DLVDILQ 153

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  164 bits (417), Expect = 2e-47
 Identities = 46/327 (14%), Positives = 88/327 (26%), Gaps = 92/327 (28%)

Query: 144 VKDGEMDDLREVLE----RSDPAWNPADSADAQGQTLLHIAIAQRRP---DIVQLLLEFG 196
           V  G  ++L  +LE     S    + A +  + G+T L  A+   +      +  LL+  
Sbjct: 10  VSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID 69

Query: 197 PDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVL 256
            D                                A            +H+A+    L+ +
Sbjct: 70  KDSG-----------------------NPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCV 106

Query: 257 KLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITAS 316
           KLL+  GA+V+          H                            G+ PL + A 
Sbjct: 107 KLLVENGADVHLRACGRFFQKHQGTCFY---------------------FGELPLSLAAC 145

Query: 317 LGYEQMVKLLLQKG---ANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGE 373
                +V  LL+     A+    +  G T         H                     
Sbjct: 146 TKQWDVVTYLLENPHQPASLEATDSLGNTVL-------H--------------------- 177

Query: 374 VRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHC 433
                        +   +    +AL    + G +++   L       +  +  G T L  
Sbjct: 178 ----------ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL 227

Query: 434 AVESGHTDVTELLVKKGADVEARTSKN 460
           A + G  ++   ++++     A    +
Sbjct: 228 AAKEGKIEIFRHILQREFSGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 90.2 bits (224), Expect = 2e-20
 Identities = 28/140 (20%), Positives = 42/140 (30%), Gaps = 29/140 (20%)

Query: 363 DSLCVAARKGEVRTMQRLIE--------AGAAINGKDLHGWTALHRASF---KGKIEVVR 411
           D L     +G    +  L+E           +   +   G T L +A      G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 412 MLIDKG-----------IDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKN 460
            L+                   +   G++ALH A+E       +LLV+ GADV  R    
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 461 VSPMQIAEC-------LHYA 473
                   C       L  A
Sbjct: 124 FFQKHQGTCFYFGELPLSLA 143

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  158 bits (403), Expect = 8e-47
 Identities = 58/146 (39%), Positives = 90/146 (61%), Gaps = 21/146 (14%)

Query: 306 DGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSL 365
           +G TPLH+ A  G+ ++VKLLL+ GA+   ++K+G+T                      L
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP---------------------L 39

Query: 366 CVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE 425
            +AAR G +  ++ L+EAGA +N KD +G T LH A+  G +EVV++L++ G DV+AKD+
Sbjct: 40  HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 99

Query: 426 DGYTALHCAVESGHTDVTELLVKKGA 451
           +G T LH A  +GH +V +LL++ GA
Sbjct: 100 NGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  135 bits (343), Expect = 3e-38
 Identities = 48/109 (44%), Positives = 71/109 (65%), Gaps = 6/109 (5%)

Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
           L +AAR G +  ++ L+EAGA +N KD +G T LH A+  G +EVV++L++ G DV+AKD
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65

Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
           ++G T LH A  +GH +V +LL++ GADV A+     +P      LH A
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP------LHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  118 bits (299), Expect = 6e-32
 Identities = 56/123 (45%), Positives = 77/123 (62%), Gaps = 1/123 (0%)

Query: 209 TPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNA 268
           TPL  AA  G   +V+LLL   A     + +   P+HLA R GHLEV+KLLL  GA+VNA
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 269 LTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQ 328
             K+G T LHLA  +   +  +LLL  GA  + ++ ++G TPLH+ A  G+ ++VKLLL+
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLE 122

Query: 329 KGA 331
            GA
Sbjct: 123 AGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  111 bits (280), Expect = 2e-29
 Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 6/81 (7%)

Query: 393 HGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGAD 452
           +G T LH A+  G +EVV++L++ G DV+AKD++G T LH A  +GH +V +LL++ GAD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 453 VEARTSKNVSPMQIAECLHYA 473
           V A+     +P      LH A
Sbjct: 61  VNAKDKNGRTP------LHLA 75

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 86.6 bits (216), Expect = 1e-20
 Identities = 48/131 (36%), Positives = 64/131 (48%), Gaps = 34/131 (25%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           ++ D  G+T LH+A      ++V+LLLE G DV ++ + G  TPL               
Sbjct: 29  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPL--------------- 72

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
                             HLA R GHLEV+KLLL  GA+VNA  K+G T LHLA  +   
Sbjct: 73  ------------------HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 114

Query: 287 DCARLLLANGA 297
           +  +LLL  GA
Sbjct: 115 EVVKLLLEAGA 125

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  157 bits (399), Expect = 7e-46
 Identities = 35/156 (22%), Positives = 54/156 (34%), Gaps = 23/156 (14%)

Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLG 362
           +       L   A+ G  + V+ LL+ GAN    N  G+                     
Sbjct: 8   SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRP------------------- 48

Query: 363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWT-ALHRASFKGKIEVVRMLIDKGIDVD 421
             + V    G  R  + L+  GA  N  D    T  +H A+ +G ++ + +L   G  +D
Sbjct: 49  --IQVMMM-GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD 105

Query: 422 AKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
            +D  G   +  A E GH DV   L           
Sbjct: 106 VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSN 141

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  156 bits (397), Expect = 1e-45
 Identities = 39/183 (21%), Positives = 64/183 (34%), Gaps = 29/183 (15%)

Query: 262 KGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQ 321
             A  +   +     L  A    R +  R LL  GA P+  N   G  P+ +   +G  +
Sbjct: 3   PAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPN-SYGRRPIQV-MMMGSAR 58

Query: 322 MVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLI 381
           + +LLL  GA     + +  T                      +  AAR+G + T+  L 
Sbjct: 59  VAELLLLHGAEPNCADPATLTR--------------------PVHDAAREGFLDTLVVLH 98

Query: 382 EAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTD 441
            AGA ++ +D  G   +  A   G  +V R L          +     A       G +D
Sbjct: 99  RAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE-----GPSD 153

Query: 442 VTE 444
           + +
Sbjct: 154 IPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  129 bits (326), Expect = 2e-35
 Identities = 45/159 (28%), Positives = 65/159 (40%), Gaps = 9/159 (5%)

Query: 166 ADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVEL 225
           A S+       L  A A+ R + V+ LLE G +  +    G   P++     G A + EL
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGR-RPIQVMMM-GSARVAEL 62

Query: 226 LLARKASTERSETSTW-GPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDR 284
           LL   A    ++ +T   P+H A R G L+ L +L   GA ++     G   + LA E  
Sbjct: 63  LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG 122

Query: 285 RRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMV 323
            RD AR L A            G     I A+ G   + 
Sbjct: 123 HRDVARYLRAAAGGT------RGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  126 bits (320), Expect = 1e-34
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 27/170 (15%)

Query: 327 LQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAA 386
           ++  A      +                          L  AA +G V  ++ L+EAGA 
Sbjct: 1   MEPAAG--SSMEPSADW---------------------LATAAARGRVEEVRALLEAGAN 37

Query: 387 INGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYT-ALHCAVESGHTDVTEL 445
            N  + +G   +      G   V  +L+  G + +  D    T  +H A   G  D   +
Sbjct: 38  PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVV 96

Query: 446 LVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLR 495
           L + GA ++ R +    P+ +AE L +  ++R L        G    + R
Sbjct: 97  LHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG--SNHAR 144

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  157 bits (400), Expect = 1e-45
 Identities = 32/225 (14%), Positives = 58/225 (25%), Gaps = 53/225 (23%)

Query: 239 STWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGAR 298
           S +  +  A   G  E    L  KG      +   +  L+                    
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKE-SVLKSNILY-------------------- 43

Query: 299 PDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDA 358
                       L         ++   L+ KGA+   R K G T +    + G + +   
Sbjct: 44  ----------DVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDI--- 90

Query: 359 LKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRM------ 412
                        G     +  +E GA I          + +  F   ++   M      
Sbjct: 91  ------------TGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKL 138

Query: 413 -LIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
                G+ +  KD+ G TAL            +++         +
Sbjct: 139 IFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  134 bits (339), Expect = 5e-37
 Identities = 25/195 (12%), Positives = 56/195 (28%), Gaps = 31/195 (15%)

Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLG 362
           NA      +   A LG  +    L +KG     +    K+                    
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDV-------------- 45

Query: 363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVV------RMLIDK 416
             L     +   +    LI  GA I  +   G T        G  ++       ++ ++K
Sbjct: 46  --LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK 103

Query: 417 GIDVDAKDEDGYTALHCAVESGHTDVTE-------LLVKKGADVEARTSKNVSPMQIAEC 469
           G D+ A  +     +   + +   D  E       +  + G  +  +    ++ ++  + 
Sbjct: 104 GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR 163

Query: 470 LHYAGISRILMHGGA 484
                  +++     
Sbjct: 164 CQKPIALKMMEDYIK 178

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  133 bits (337), Expect = 1e-36
 Identities = 34/254 (13%), Positives = 63/254 (24%), Gaps = 73/254 (28%)

Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKAS 232
               +  A      +    L E G + +       S  L                     
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESV--LKSNILYDV------------------ 45

Query: 233 TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLL 292
                      +         ++   L+ KGA++ + TK+G T      +    D     
Sbjct: 46  -----------LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTT 94

Query: 293 LANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
                                       ++ K+ L+KGA+     K  K           
Sbjct: 95  ----------------------------ELCKIFLEKGADITALYKPYKIVVFKNIFNYF 126

Query: 353 SRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRM 412
               + + L   +                ++G  +  KD  G TAL       K   ++M
Sbjct: 127 VDENEMIPLYKLI--------------FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKM 172

Query: 413 LIDKGIDVDAKDED 426
           + D     + K+  
Sbjct: 173 MEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 11/115 (9%), Positives = 25/115 (21%), Gaps = 43/115 (37%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQ-------LLLEFGPDVESQGRCGCSTPLEAAAAAGE 219
            +     + ++   I     D  +       +  + G  +  + + G  T L        
Sbjct: 108 TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGL-TAL-------- 158

Query: 220 ALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGN 274
                                        R      LK++       N   K+ +
Sbjct: 159 -------------------------EFVKRCQKPIALKMMEDYIKKYNL--KENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 422 AKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKN---VSPMQIAECLHYAGISRI 478
           +     Y  +  A   G  +    L +KG + +    K+      ++         IS  
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60

Query: 479 LMHGGA-----TKDG 488
           L++ GA     TK+G
Sbjct: 61  LINKGADIKSRTKEG 75

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  158 bits (401), Expect = 7e-45
 Identities = 57/274 (20%), Positives = 88/274 (32%), Gaps = 56/274 (20%)

Query: 209 TPLEAAAAAGEALIVELLL-------ARKASTERSETST-WGPIHLAL---RGGHLEVLK 257
             +  A A      +E LL        R   +E  +  T    +  A+     G  + + 
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 258 LLLIKGANVNALTK-----------DGNTALHLAVEDRRRDCARLLLANGARPDIRNARD 306
           LLL      ++L +            G TALH+A+E R      LL+ NGA  D+  A  
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA--DV-QAAA 131

Query: 307 ----------------GDTPLHITASLGYEQMVKLLLQKG---ANKYIRNKSGKTAYDVA 347
                           G+ PL + A      +VK LLQ     A+   R+  G T     
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHAL 191

Query: 348 AECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKI 407
            E   + + +   +          G      +L          +  G T L  A+  GKI
Sbjct: 192 VEVADNTVDNTKFVTSMYNEILILG-----AKLHPTLKLEEITNRKGLTPLALAASSGKI 246

Query: 408 EVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTD 441
            V+  ++ + I             H A    H  
Sbjct: 247 GVLAYILQREIH-------EPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  152 bits (385), Expect = 2e-42
 Identities = 48/272 (17%), Positives = 81/272 (29%), Gaps = 62/272 (22%)

Query: 243 PIHLALRGGHLEVLKLLLI-------KGANVNAL-TKDGNTALHLAVEDRRR---DCARL 291
            I  A+   + + L+ LL        +  +      + G T L  A+ +      D   L
Sbjct: 16  SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75

Query: 292 LLANGARPDIRNA----------RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGK 341
           LL    + D                G T LHI        +V LL++ GA+         
Sbjct: 76  LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF 135

Query: 342 TAYDVAAECGHSRLFDALKLGDS-LCVAARKGEVRTMQRLIEAG---AAINGKDLHGWTA 397
                     +         G+  L +AA   ++  ++ L++     A I+ +D  G T 
Sbjct: 136 FKKTKGRPGFY--------FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTV 187

Query: 398 LHRASFKGK----------------IEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTD 441
           LH                       + +   L       +  +  G T L  A  SG   
Sbjct: 188 LHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIG 247

Query: 442 VTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
           V   ++++                  EC H A
Sbjct: 248 VLAYILQREIHEP-------------ECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  117 bits (296), Expect = 5e-30
 Identities = 36/238 (15%), Positives = 58/238 (24%), Gaps = 76/238 (31%)

Query: 263 GANVNALTKDGNTALHLAVEDRRRDCARLLL-------ANGARPDIRNARDGDTPLH--- 312
            A           ++  AV          LL             + ++   G T L    
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 313 ITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKG 372
           +    G    + LLL          +                                  
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQF--------------------------------- 89

Query: 373 EVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDED------ 426
                       A+       G TALH A  +  + +V +L++ G DV A          
Sbjct: 90  ----------VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKT 139

Query: 427 --------GYTALHCAVESGHTDVTELLVKKG---ADVEARTSKNVSPMQIAECLHYA 473
                   G   L  A  +    + + L++     AD+ AR S   +       LH  
Sbjct: 140 KGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTV------LHAL 191

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  103 bits (259), Expect = 4e-25
 Identities = 43/215 (20%), Positives = 70/215 (32%), Gaps = 46/215 (21%)

Query: 139 VLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPD 198
           + +LL    + D L++ +            +  +GQT LHIAI +R   +V LL+E G D
Sbjct: 73  IALLLDVARKTDSLKQFVNA------SYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD 126

Query: 199 VESQGRCGCS-------------TPLEAAAAAGEALIVELLL---ARKASTERSETSTWG 242
           V++                     PL  AA   +  IV+ LL    + A     ++    
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186

Query: 243 PIHLALRGGHLEV---------LKLLLIKGANVN-------ALTKDGNTALHLAVEDRRR 286
            +H  +      V            +LI GA ++          + G T L LA    + 
Sbjct: 187 VLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI 246

Query: 287 DCARLLLANGARPDIRNARDGDTPLHITASLGYEQ 321
                +L                  H  A   +  
Sbjct: 247 GVLAYILQREI--------HEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  100 bits (250), Expect = 8e-24
 Identities = 33/160 (20%), Positives = 57/160 (35%), Gaps = 29/160 (18%)

Query: 330 GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAING 389
            A +       + +           +FDA+   +       +  +  +QR  +       
Sbjct: 3   SAGEKPPRLYDRRS-----------IFDAVAQSN---CQELESLLPFLQRSKKRLTDSEF 48

Query: 390 KDL-HGWTALHRASF---KGKIEVVRMLIDKGIDVDA-----------KDEDGYTALHCA 434
           KD   G T L +A      G+ + + +L+D     D+               G TALH A
Sbjct: 49  KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIA 108

Query: 435 VESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAG 474
           +E  +  +  LLV+ GADV+A  + +           Y G
Sbjct: 109 IERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFG 148

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 67.1 bits (164), Expect = 1e-12
 Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 16/107 (14%)

Query: 383 AGAAINGKDLHGWTALHRASFKGK-------IEVVRMLIDKGIDVDAKD-EDGYTALHCA 434
             A      L+   ++  A  +         +  ++    +  D + KD E G T L  A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 435 V---ESGHTDVTELLVKKGADVEARTSKNVSPMQIAEC-----LHYA 473
           +    +G  D   LL+      ++      +    +       LH A
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIA 108

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  153 bits (389), Expect = 9e-45
 Identities = 36/190 (18%), Positives = 59/190 (31%), Gaps = 55/190 (28%)

Query: 263 GANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQM 322
              ++ L    +  L  A    + +  R LL  GA P+  N R G  P+ +   +G  Q+
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN-RFGRRPIQV-MMMGSAQV 59

Query: 323 VKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIE 382
            +LLL  GA     + +  T                                        
Sbjct: 60  AELLLLHGAEPNCADPATLT---------------------------------------- 79

Query: 383 AGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDV 442
                          +H A+ +G ++ + +L   G  +D  D  G   +  A E GH D+
Sbjct: 80  -------------RPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDI 126

Query: 443 TELLVKKGAD 452
              L     D
Sbjct: 127 ARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  125 bits (316), Expect = 3e-34
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 23/156 (14%)

Query: 330 GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAING 389
               ++   S                         L  AA +G+V T+++L+EAGA  N 
Sbjct: 2   SPGIHMLGGSSDAG---------------------LATAAARGQVETVRQLLEAGADPNA 40

Query: 390 KDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYT-ALHCAVESGHTDVTELLVK 448
            +  G   +      G  +V  +L+  G + +  D    T  +H A   G  D   +L +
Sbjct: 41  LNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR 99

Query: 449 KGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
            GA ++   +    P+ +AE   +  I+R L     
Sbjct: 100 AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  117 bits (296), Expect = 2e-31
 Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
                     L  A A+ + + V+ LLE G D  +  R G   P++     G A + ELL
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGR-RPIQVMMM-GSAQVAELL 63

Query: 227 LARKASTERSETSTW-GPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRR 285
           L   A    ++ +T   P+H A R G L+ L +L   GA ++     G   + LA E   
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH 123

Query: 286 RDCARLLLANGA 297
           RD AR L A   
Sbjct: 124 RDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  117 bits (295), Expect = 2e-31
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 1/110 (0%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIR 302
            +  A   G +E ++ LL  GA+ NAL + G   + + +       A LLL +GA P+  
Sbjct: 15  GLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSA-QVAELLLLHGAEPNCA 73

Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
           +      P+H  A  G+   + +L + GA   + +  G+   D+A E GH
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH 123

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  112 bits (283), Expect = 1e-29
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 383 AGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDV 442
               I+         L  A+ +G++E VR L++ G D +A +  G   +   +  G   V
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQV 59

Query: 443 TELLVKKGADVEARTSKNV-SPMQIAECLHYA 473
            ELL+  GA+        +  P      +H A
Sbjct: 60  AELLLLHGAEPNCADPATLTRP------VHDA 85

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 84.0 bits (209), Expect = 2e-19
 Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 1/99 (1%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           ++ +  G+  + +        + +LLL  G +         + P+  AA  G    + +L
Sbjct: 39  NALNRFGRRPIQVM-MMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVL 97

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGAN 265
               A  +  +     P+ LA   GH ++ + L     +
Sbjct: 98  HRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  149 bits (380), Expect = 2e-43
 Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 21/153 (13%)

Query: 296 GARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRL 355
           G+     +  D    L   A  G +  V++L+  GA+   +++ G T             
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTP------------ 50

Query: 356 FDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLID 415
                    L +A   G +  ++ L++ GA +N  D  G+T LH A+F G +E+  +L+ 
Sbjct: 51  ---------LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101

Query: 416 KGIDVDAKDEDGYTALHCAVESGHTDVTELLVK 448
            G DV+A+D+ G TA   ++ +G+ D+ E+L K
Sbjct: 102 HGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  128 bits (325), Expect = 2e-35
 Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 6/109 (5%)

Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
           L  AAR G+   ++ L+  GA +N KD +G T L+ A+  G +E+V +L+  G DV+A D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77

Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
             G+T LH A   GH ++ E+L+K GADV A+     +          +
Sbjct: 78  AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTA------FDIS 120

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  109 bits (275), Expect = 1e-28
 Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 39/162 (24%)

Query: 168 SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLL 227
              +     L  A    + D V++L+  G DV ++   G  TPL                
Sbjct: 9   HHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGL-TPL---------------- 51

Query: 228 ARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRD 287
                            +LA   GHLE++++LL  GA+VNA+   G T LHLA      +
Sbjct: 52  -----------------YLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLE 94

Query: 288 CARLLLANGARPDIRNARD--GDTPLHITASLGYEQMVKLLL 327
            A +LL +GA  D+ NA+D  G T   I+   G E + ++L 
Sbjct: 95  IAEVLLKHGA--DV-NAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  104 bits (263), Expect = 7e-27
 Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 11/93 (11%)

Query: 384 GAAIN---GKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHT 440
           G+  +   G D      L  A+  G+ + VR+L+  G DV+AKDE G T L+ A   GH 
Sbjct: 3   GSHHHHHHGSD--LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHL 60

Query: 441 DVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
           ++ E+L+K GADV A  +   +P      LH A
Sbjct: 61  EIVEVLLKNGADVNAVDAIGFTP------LHLA 87

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  149 bits (380), Expect = 2e-43
 Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 23/157 (14%)

Query: 296 GARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRL 355
           G   D      G+T LHI +  G    V+ LLQ G++  +++ +G T             
Sbjct: 1   GI--DPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTP------------ 46

Query: 356 FDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLID 415
                    L  A   G ++ ++ L++  A +N       + LH A+  G +++V++L+ 
Sbjct: 47  ---------LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97

Query: 416 KGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGAD 452
            G   +A +  G   +    +     +  L  K  + 
Sbjct: 98  YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  137 bits (349), Expect = 6e-39
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 22/155 (14%)

Query: 330 GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAING 389
           G + +  N  G+T                      L +A+ KG++ +++ L++ G+  N 
Sbjct: 1   GIDPF-TNHRGETL---------------------LHIASIKGDIPSVEYLLQNGSDPNV 38

Query: 390 KDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKK 449
           KD  GWT LH A   G ++VV +L+     V+       + LH A ++GH D+ +LL+  
Sbjct: 39  KDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98

Query: 450 GADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
           GA   A     + P+   +      +  +     +
Sbjct: 99  GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  122 bits (310), Expect = 2e-33
 Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 35/164 (21%)

Query: 169 ADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLA 228
            + +G+TLLHIA  +     V+ LL+ G D   +   G  TPL                 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW-TPL----------------- 47

Query: 229 RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDC 288
                           H A   GHL+V++LLL   A VN      ++ LH A ++   D 
Sbjct: 48  ----------------HEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDI 91

Query: 289 ARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGAN 332
            +LLL+ GA  +  N   G  P+  T     + ++ L  +  ++
Sbjct: 92  VKLLLSYGASRNAVN-IFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 88.6 bits (221), Expect = 4e-21
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 34/131 (25%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           +  D  G T LH A       +V+LLL+    V + G     +PL               
Sbjct: 37  NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND-SPL--------------- 80

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
                             H A + GH++++KLLL  GA+ NA+   G   +    ++  +
Sbjct: 81  ------------------HDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK 122

Query: 287 DCARLLLANGA 297
               L   N +
Sbjct: 123 SLLLLPEKNES 133

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  149 bits (378), Expect = 1e-41
 Identities = 46/248 (18%), Positives = 82/248 (33%), Gaps = 46/248 (18%)

Query: 251 GHLEVLKLLLIKGANVNAL----TKDGNTALHLAV---EDRRRDCARLLLANGARPDIRN 303
           G   +L  LL     +          G T L  A+      R D   +LL    +     
Sbjct: 20  GLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR 79

Query: 304 AR----------DGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHS 353
                        G T LHI      +  V+LL++KGA+ + + +             + 
Sbjct: 80  EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFY- 138

Query: 354 RLFDALKLGDS-LCVAARKGEVRTMQRLIEAG---AAINGKDLHGWTALHRASF------ 403
                   G+  L +AA   +   +  L E G   A +  +D  G T LH          
Sbjct: 139 -------FGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTR 191

Query: 404 ---KGKIEVVRMLIDKGIDVDAK-------DEDGYTALHCAVESGHTDVTELLVKKGA-D 452
              K   ++  +L+ K   +          + DG + L  A ++G   + + ++++   D
Sbjct: 192 ENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251

Query: 453 VEARTSKN 460
             A    +
Sbjct: 252 AAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  112 bits (283), Expect = 2e-28
 Identities = 44/187 (23%), Positives = 65/187 (34%), Gaps = 40/187 (21%)

Query: 165 PADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVE 224
           P      +GQT LHIAI +R    V+LL+E G DV +Q R     P +            
Sbjct: 85  PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKD------------ 132

Query: 225 LLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKG---ANVNALTKDGNTALHLAV 281
                       E     P+ LA       ++  L   G   A++      GNT LH  V
Sbjct: 133 ----EGGYFYFGEL----PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184

Query: 282 E---------DRRRDCARLLLANGAR-------PDIRNARDGDTPLHITASLGYEQMVKL 325
                             LLL   A+         + N  DG +PL + A  G   + + 
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLN-NDGLSPLMMAAKTGKIGIFQH 243

Query: 326 LLQKGAN 332
           ++++   
Sbjct: 244 IIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  108 bits (271), Expect = 8e-27
 Identities = 39/190 (20%), Positives = 61/190 (32%), Gaps = 38/190 (20%)

Query: 309 TPLHITASLG----YEQMVKLLLQKGAN----KYIRNKSGKTAYDVAAECGHSRLFDALK 360
             L    S G     E ++  LL         ++    +GKT    A     +   D + 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
           +   L   A K     M+  I   +        G TALH A  +     V +L++KG DV
Sbjct: 67  I---LLDIAEKTG--NMREFI--NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV 119

Query: 421 DAKD--------------EDGYTALHCAVESGHTDVTELLVKKG---ADVEARTSKNVSP 463
            A+                 G   L  A  +    +   L + G   AD+  + S+  + 
Sbjct: 120 HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTV 179

Query: 464 MQIAECLHYA 473
                 LH  
Sbjct: 180 ------LHAL 183

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 89.8 bits (223), Expect = 2e-20
 Identities = 32/139 (23%), Positives = 48/139 (34%), Gaps = 24/139 (17%)

Query: 354 RLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDL----HGWTALHRASF---KGK 406
            LFD +  G         G    +  L+     +  ++      G T L +A      G+
Sbjct: 8   ILFDIVSRGSP------DGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR 61

Query: 407 IEVVRMLIDKG-----------IDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEA 455
            + + +L+D                      G TALH A+E       ELLV+KGADV A
Sbjct: 62  NDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA 121

Query: 456 RTSKNVSPMQIAECLHYAG 474
           +        +      Y G
Sbjct: 122 QARGRFFQPKDEGGYFYFG 140

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 64.4 bits (157), Expect = 9e-12
 Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 20/121 (16%)

Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGP---DVESQGRCGCSTPLEAAAAAGEAL-------- 221
           G+  L +A    +P IV  L E G    D+  Q   G  T L A  A  +          
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGN-TVLHALVAIADNTRENTKFVT 198

Query: 222 -IVELLLARKASTERSETST-------WGPIHLALRGGHLEVLKLLLIKGANVNALTKDG 273
            + +LLL + A                  P+ +A + G + + + ++ +     A     
Sbjct: 199 KMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHH 258

Query: 274 N 274
           +
Sbjct: 259 H 259

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  142 bits (360), Expect = 1e-40
 Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 21/139 (15%)

Query: 306 DGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSL 365
             D         G    VK  + KG +     + G+                       L
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKP---------------------L 44

Query: 366 CVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE 425
             AA  G++  ++ L+  GA IN  D H  T L  A ++G +  V++L+ KG D   K  
Sbjct: 45  HYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP 104

Query: 426 DGYTALHCAVESGHTDVTE 444
           DG TA           + +
Sbjct: 105 DGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  134 bits (339), Expect = 1e-37
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
              A + G++  ++  +  G  +N     G   LH A+  G++E++  L+ KG D++A D
Sbjct: 11  FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70

Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
           +   T L  AV  GH    +LL+ KGAD   +    ++           
Sbjct: 71  KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA------FEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  111 bits (280), Expect = 2e-29
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 207 CSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANV 266
           C      A   G+   V+  +A+     R+      P+H A   G LE+L+ LL+KGA++
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66

Query: 267 NALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVK 324
           NA  K   T L  AV +    C +LLL+ GA   ++   DG T    T +   + +++
Sbjct: 67  NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG-PDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  109 bits (275), Expect = 1e-28
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 393 HGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGAD 452
                   A   G ++ V+  + KG DV+   E G   LH A + G  ++ E L+ KGAD
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65

Query: 453 VEARTSKNVSPMQIAECLHYA 473
           + A    +++P      L  A
Sbjct: 66  INAPDKHHITP------LLSA 80

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 76.7 bits (190), Expect = 4e-17
 Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 34/117 (29%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           +     G+  LH A    + +I++ LL  G D+ +  +    TPL               
Sbjct: 34  NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHI-TPL--------------- 77

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVED 283
                               A+  GH+  +KLLL KGA+      DG TA       
Sbjct: 78  ------------------LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ 116

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 58.9 bits (144), Expect = 6e-11
 Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 6/52 (11%)

Query: 422 AKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
                       A+++G  D  +  V KG DV         P      LHYA
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKP------LHYA 47

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 45.1 bits (108), Expect = 4e-06
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVE 224
           ++ D    T L  A+ +     V+LLL  G D   +G  G  T  EA        +++
Sbjct: 67  NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGL-TAFEATDNQAIKALLQ 123

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  146 bits (369), Expect = 8e-40
 Identities = 40/297 (13%), Positives = 86/297 (28%), Gaps = 27/297 (9%)

Query: 154 EVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEA 213
           ++++         +    + +  L   +     ++   L     +  S+G          
Sbjct: 44  KIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHV 103

Query: 214 AAAAGEALIVELLLARKA-----STERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNA 268
           +  +    + +     +        E   T    P+H      +LE++K L+  G+N   
Sbjct: 104 SFDSLLQEVNDAFPNTQLNLNIPVDEHGNT----PLHWLTSIANLELVKHLVKHGSNRLY 159

Query: 269 LTKDGNTALHLAVEDR----RRDCARLLLANGARPDIRNARDGDTPLHITASL----GYE 320
               G + L  AV+            LL        + +     T LH         G  
Sbjct: 160 GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED-SMNRTILHHIIITSGMTGCS 218

Query: 321 QMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRL 380
              K  L       ++ ++                 +     +      +   +  +   
Sbjct: 219 AAAKYYLDILMGWIVKKQNRPIQSGTN---------EKESKPNDKNGERKDSILENLDLK 269

Query: 381 IEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVES 437
                 +N +D +G T L+ A+  G I +V  L+D G D    ++ G   +      
Sbjct: 270 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  145 bits (367), Expect = 2e-39
 Identities = 36/276 (13%), Positives = 77/276 (27%), Gaps = 26/276 (9%)

Query: 208 STPLEAAAAAGEALIVELLLARKAST-ERSETSTWGPIHLALRGGHLEVLKLLLIKGANV 266
              L+         +   L    ++      +S     H++      EV         N+
Sbjct: 64  EAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL 123

Query: 267 NALT-KDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLG----YEQ 321
           N    + GNT LH        +  + L+ +G+     +   G++ L              
Sbjct: 124 NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD-NMGESCLVKAVKSVNNYDSGT 182

Query: 322 MVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLI 381
              LL        + +   +T                         AA+      M  ++
Sbjct: 183 FEALLDYLYPCLILEDSMNRTILHHIIITSGMT---------GCSAAAKYYLDILMGWIV 233

Query: 382 EAGAAINGKDLHGWTALH----RASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVES 437
           +          +   +             +E + +       ++A+D +G T L+ A   
Sbjct: 234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 293

Query: 438 GHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
           G+  + + L+  GAD        + P      + + 
Sbjct: 294 GNISIVDALLDYGADPFIANKSGLRP------VDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 96.3 bits (239), Expect = 5e-22
 Identities = 34/227 (14%), Positives = 59/227 (25%), Gaps = 41/227 (18%)

Query: 262 KGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNAR----------DGDTPL 311
              +      D N      +     D     L++  +                   +  L
Sbjct: 8   PSGDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFL 67

Query: 312 HITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARK 371
                   ++M   L    +N+     S        +    S L +              
Sbjct: 68  QRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVS--FDSLLQEVNDA---------- 115

Query: 372 GEVRTMQRLIEAGAAINGK-DLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTA 430
                          +N   D HG T LH  +    +E+V+ L+  G +    D  G + 
Sbjct: 116 --------FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESC 167

Query: 431 LHCAVESGHT----DVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
           L  AV+S +         LL      +    S N +       LH+ 
Sbjct: 168 LVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTI------LHHI 208

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  145 bits (368), Expect = 4e-39
 Identities = 40/301 (13%), Positives = 81/301 (26%), Gaps = 24/301 (7%)

Query: 174 QTLLHIAIAQRRPDI-VQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKAS 232
           Q    + +     +   + L         +    C        ++     + LLL     
Sbjct: 62  QVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALD-TLCLLLTSDEI 120

Query: 233 TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNA--LTKDGNTALHLAVEDRRRDCAR 290
            +  +   +    LA   GHL VL  L           +  +   A  LA E+       
Sbjct: 121 VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLN 180

Query: 291 LLLANGARPDIRNAR-DGDTPLHITASL-GYEQMVKLLLQKGANKYIRNKSGKTAYDVAA 348
            L            + +        A   G+  ++  LL                 +   
Sbjct: 181 RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV 240

Query: 349 ECGHSRLFDALK-LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGK- 406
               +R  + LK + D+  ++   G    +  L+     + G     +  L     +   
Sbjct: 241 NPFIARHVNRLKEMHDAFKLSNPDG----VFDLVTKSECLQG-----FYMLRNLIRRNDE 291

Query: 407 --IEVVRMLI-----DKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSK 459
             ++ +R L+                D    L  A+  G+     LL+   + +    + 
Sbjct: 292 VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKAN 351

Query: 460 N 460
           N
Sbjct: 352 N 352

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  139 bits (351), Expect = 8e-37
 Identities = 42/311 (13%), Positives = 79/311 (25%), Gaps = 35/311 (11%)

Query: 163 WNPADSADAQGQTLLHIAIA---QRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGE 219
           W+ A     + + +  +A         D + LLL     V+             AA  G 
Sbjct: 82  WSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENY-QAFRLAAENGH 140

Query: 220 ALIVELLLARKASTERSETSTWG--PIHLALRGGHLEVLKLLLIKG---ANVNALTKDGN 274
             ++  L     +   +           LA   GHL VL  L       A      ++  
Sbjct: 141 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY 200

Query: 275 TALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKY 334
                AV     +    LL            +           G + +   + +      
Sbjct: 201 AFRWAAVGRGHHNVINFLLDCPVMLAYAEIHE--------FEYGEKYVNPFIARHVNRL- 251

Query: 335 IRNKSGKTAYDVAAECGHSRLFDALKLGDS---LCVAARKGEVRTMQRL--------IEA 383
              K    A+ ++   G   L    +       L    R+ +   +  +        I+A
Sbjct: 252 ---KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA 308

Query: 384 GAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVT 443
            A            L  A   G      +L+     +     + Y   +     G  D+ 
Sbjct: 309 LAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNY---YINETGGRLDLR 365

Query: 444 ELLVKKGADVE 454
            + ++      
Sbjct: 366 AVALEHHHHHH 376

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  125 bits (316), Expect = 5e-32
 Identities = 39/350 (11%), Positives = 84/350 (24%), Gaps = 74/350 (21%)

Query: 187 DIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHL 246
           + + + L    ++E          L     A      + L +           +     +
Sbjct: 48  EAIHIFLPGTKNMEQ------VRQLLCLYYAHYNRNAKQLWSDAHK---KGIKSEVICFV 98

Query: 247 ALRGGH---LEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRN 303
           A   G    L+ L LLL     V  +  +   A  LA E+        L        +  
Sbjct: 99  AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM 158

Query: 304 -ARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLG 362
              +      + A  G+  ++  L +    +       +  Y             A    
Sbjct: 159 IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY-------------AF--- 202

Query: 363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
                A  +G    +  L++    +   ++H           G+  V   +      +  
Sbjct: 203 --RWAAVGRGHHNVINFLLDCPVMLAYAEIH-------EFEYGEKYVNPFIARHVNRL-- 251

Query: 423 KDEDGYTALHCAVESGHTDVTE--------------------------------LLVKKG 450
             ++ + A   +   G  D+                                    +K  
Sbjct: 252 --KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKAL 309

Query: 451 ADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQ 500
           A            +++A  L   G   +L+   +     +  N       
Sbjct: 310 APTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETG 359

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 81.5 bits (201), Expect = 6e-17
 Identities = 24/207 (11%), Positives = 50/207 (24%), Gaps = 33/207 (15%)

Query: 154 EVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEA 213
             L    P    A             A+ +   +++  LL+    +              
Sbjct: 180 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH-------- 231

Query: 214 AAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDG 273
               GE  +   +       +           L+   G  +++           +    G
Sbjct: 232 EFEYGEKYVNPFIARHVNRLKEMHD----AFKLSNPDGVFDLVT---------KSECLQG 278

Query: 274 NTALHLA--------VEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKL 325
              L           ++D R   +   +   A        D +  L +   LG +    L
Sbjct: 279 FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIP-GDANELLRLALRLGNQGACAL 337

Query: 326 LLQKGANKYIRNKSGKTAYDVAAECGH 352
           LL   +   +   +    Y +    G 
Sbjct: 338 LLSIPS---VLALTKANNYYINETGGR 361

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 78.8 bits (194), Expect = 5e-16
 Identities = 23/189 (12%), Positives = 50/189 (26%), Gaps = 29/189 (15%)

Query: 281 VEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSG 340
           +E+   D    L+      ++         L +  +L Y++ + + L    N        
Sbjct: 9   IENYENDPQLRLIPWILWENLFQHFISANELSL-MTLSYKEAIHIFLPGTKN------ME 61

Query: 341 KTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHR 400
           +    +     H                         ++L         K          
Sbjct: 62  QVRQLLCLYYAHYNRNA--------------------KQLWSDAHKKGIKSEVICFVAAI 101

Query: 401 ASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR--TS 458
                 ++ + +L+     V     + Y A   A E+GH  V   L +           +
Sbjct: 102 TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA 161

Query: 459 KNVSPMQIA 467
           +N    ++A
Sbjct: 162 ENYHAFRLA 170

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  135 bits (344), Expect = 2e-38
 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 29/143 (20%)

Query: 330 GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAING 389
           G      +K G T                      L  AA+ G    +++L+  GA +N 
Sbjct: 1   GHM--WGSKDGNTP---------------------LHNAAKNGHAEEVKKLLSKGADVNA 37

Query: 390 KDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKK 449
           +   G T LH A+  G  E+V++L+ KG DV+A+ +DG T  H A ++GH ++ +LL  K
Sbjct: 38  RSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK 97

Query: 450 GADVEARTSKNVSPMQIAECLHY 472
           GADV AR+  +          H+
Sbjct: 98  GADVNARSWGSSHH------HHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  133 bits (338), Expect = 1e-37
 Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 21/130 (16%)

Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLG 362
            ++DG+TPLH  A  G+ + VK LL KGA+   R+K G T                    
Sbjct: 5   GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTP------------------- 45

Query: 363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
             L +AA+ G    ++ L+  GA +N +   G T  H A   G  E+V++L  KG DV+A
Sbjct: 46  --LHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103

Query: 423 KDEDGYTALH 432
           +        H
Sbjct: 104 RSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  103 bits (259), Expect = 1e-26
 Identities = 46/147 (31%), Positives = 62/147 (42%), Gaps = 35/147 (23%)

Query: 166 ADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVEL 225
                  G T LH A      + V+ LL  G DV ++ + G  TPL              
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN-TPL-------------- 46

Query: 226 LLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRR 285
                              HLA + GH E++KLLL KGA+VNA +KDGNT  HLA ++  
Sbjct: 47  -------------------HLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGH 87

Query: 286 RDCARLLLANGARPDIRNARDGDTPLH 312
            +  +LL A GA  + R+        H
Sbjct: 88  HEIVKLLDAKGADVNARS-WGSSHHHH 113

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  125 bits (316), Expect = 1e-34
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 3/112 (2%)

Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
            +          L+  G+ +          L  A+  G+ + VR+L+  G DV AKD++G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 428 YTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
            T LH A  +GH +V +LL++ GADV A+     +   I+       ++ IL
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  114 bits (287), Expect = 1e-30
 Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 4/114 (3%)

Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARD 306
                H      L+ +G+++ +   D    L  A    + D  R+L+ANGA    ++ ++
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKD-KN 56

Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
           G TPLH+ A  G+ ++VKLLL+ GA+   ++K GKTA+D++ + G+  L + L+
Sbjct: 57  GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  111 bits (280), Expect = 1e-29
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 24/132 (18%)

Query: 315 ASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEV 374
           +S  +      L+ +G++                                L  AAR G+ 
Sbjct: 2   SSHHHHHHSSGLVPRGSHM---GSDLGKK---------------------LLEAARAGQD 37

Query: 375 RTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCA 434
             ++ L+  GA +  KD +G T LH A+  G +EVV++L++ G DV A+D+ G TA   +
Sbjct: 38  DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97

Query: 435 VESGHTDVTELL 446
           +++G+ D+ E+L
Sbjct: 98  IDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 94.9 bits (237), Expect = 1e-23
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 4/113 (3%)

Query: 214 AAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDG 273
            ++         L+ R +            +  A R G  + +++L+  GA+V A  K+G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSDL---GKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 274 NTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLL 326
           +T LHLA  +   +  +LLL  GA    ++ + G T   I+   G E + ++L
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQD-KFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 85.3 bits (212), Expect = 2e-20
 Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 187 DIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHL 246
                L+  G  + S         L  AA AG+   V +L+A  A     + +   P+HL
Sbjct: 8   HHSSGLVPRGSHMGSDLG----KKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHL 63

Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLL 292
           A R GHLEV+KLLL  GA+V A  K G TA  +++++   D A +L
Sbjct: 64  AARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 41.4 bits (98), Expect = 7e-05
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
            + D  G T LH+A      ++V+LLLE G DV +Q + G  T  + +   G   + E+L
Sbjct: 51  AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK-TAFDISIDNGNEDLAEIL 109

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  121 bits (307), Expect = 1e-33
 Identities = 41/87 (47%), Positives = 62/87 (71%)

Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
           L +AAR G +  ++ L+EAGA +N KD +G T LH A+  G +EVV++L++ G DV+AKD
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65

Query: 425 EDGYTALHCAVESGHTDVTELLVKKGA 451
           ++G T LH A  +GH +V +LL++ GA
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  108 bits (274), Expect = 6e-29
 Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 6/81 (7%)

Query: 393 HGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGAD 452
           +G T LH A+  G +EVV++L++ G DV+AKD++G T LH A  +GH +V +LL++ GAD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 453 VEARTSKNVSPMQIAECLHYA 473
           V A+     +P      LH A
Sbjct: 61  VNAKDKNGRTP------LHLA 75

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  103 bits (260), Expect = 4e-27
 Identities = 45/89 (50%), Positives = 62/89 (69%), Gaps = 1/89 (1%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIR 302
           P+HLA R GHLEV+KLLL  GA+VNA  K+G T LHLA  +   +  +LLL  GA  + +
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGA 331
           + ++G TPLH+ A  G+ ++VKLLL+ GA
Sbjct: 65  D-KNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 87.4 bits (218), Expect = 3e-21
 Identities = 42/89 (47%), Positives = 53/89 (59%)

Query: 209 TPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNA 268
           TPL  AA  G   +V+LLL   A     + +   P+HLA R GHLEV+KLLL  GA+VNA
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 269 LTKDGNTALHLAVEDRRRDCARLLLANGA 297
             K+G T LHLA  +   +  +LLL  GA
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 83.9 bits (209), Expect = 4e-20
 Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 1/81 (1%)

Query: 272 DGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGA 331
           +G T LHLA  +   +  +LLL  GA  + ++ ++G TPLH+ A  G+ ++VKLLL+ GA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 332 NKYIRNKSGKTAYDVAAECGH 352
           +   ++K+G+T   +AA  GH
Sbjct: 60  DVNAKDKNGRTPLHLAARNGH 80

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.1 bits (116), Expect = 2e-07
 Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 34/98 (34%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           ++ D  G+T LH+A      ++V+LLLE G DV ++ + G  TPL               
Sbjct: 29  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPL--------------- 72

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGA 264
                             HLA R GHLEV+KLLL  GA
Sbjct: 73  ------------------HLAARNGHLEVVKLLLEAGA 92

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 82.4 bits (203), Expect = 1e-17
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 232 STERSETSTWGPIHLALRGG---HLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDC 288
             E  ET     +HLA+R      L ++  L+    N++  T  G+TALH        +C
Sbjct: 165 GHEPDET----ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC 220

Query: 289 ARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKY 334
            +LLL   A  +I N   G+TPL I   L +E   +LL Q  + ++
Sbjct: 221 LKLLLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLTQALSGRF 265

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 82.0 bits (202), Expect = 2e-17
 Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 10/124 (8%)

Query: 247 ALRGGHLEVLKLLLIKGANVNAL------TKDGNTALHLAVEDRRRDC---ARLLLANGA 297
           A++   +  L      G ++          +   TALHLAV    R        L+ N  
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196

Query: 298 RPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFD 357
             D +    G T LH        + +KLLL+  A+  I N+SG+T  D+A    H    +
Sbjct: 197 NLDKQTG-KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEE 255

Query: 358 ALKL 361
            L  
Sbjct: 256 LLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 78.1 bits (192), Expect = 3e-16
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 3/99 (3%)

Query: 350 CGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEV 409
            GH     AL L      +  +  +  +  L++    ++ +   G TALH        E 
Sbjct: 164 NGHEPDETALHL---AVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC 220

Query: 410 VRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVK 448
           +++L+     ++  +E G T L  A    H    ELL +
Sbjct: 221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 77.0 bits (189), Expect = 8e-16
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 15/158 (9%)

Query: 333 KYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGK-- 390
            YI  K  +  Y   A   H+   D      SLC A +  ++  + +    G  +  K  
Sbjct: 108 DYITAKYMERRY---ARKKHA---DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIP 161

Query: 391 ----DLHGWTALHRASFKGK---IEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVT 443
                    TALH A        + +V  L+    ++D +   G TALH    + + +  
Sbjct: 162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL 221

Query: 444 ELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMH 481
           +LL++  A +E       +P+ IA+ L +     +L  
Sbjct: 222 KLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 73.5 bits (180), Expect = 1e-14
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 208 STPLEAAAAAGEAL---IVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGA 264
            T L  A  + +     IV+ L+    + ++        +H      + E LKLLL   A
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229

Query: 265 NVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHI 313
           ++    + G T L +A   +   C  LL           A  G    H+
Sbjct: 230 SIEIANESGETPLDIAKRLKHEHCEELL---------TQALSGRFNSHV 269

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 50.4 bits (120), Expect = 5e-07
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 163 WNPADS--ADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEA 220
            N  +      +G T LH        + ++LLL     +E     G  TPL+ A      
Sbjct: 193 QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESG-ETPLDIAKRLKHE 251

Query: 221 LIVELLL 227
              ELL 
Sbjct: 252 HCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.8 bits (103), Expect = 7e-05
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 424 DEDGYTALHCAVESG---HTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
            E   TALH AV S       + + LV+   +++ +T K  + +        A   ++L+
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 481 HGGA 484
            G A
Sbjct: 226 RGKA 229

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152

 Score = 78.2 bits (192), Expect = 2e-17
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 13/135 (9%)

Query: 4   LVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLA 63
           L+ + P+  +        +    + L NV     VAF+++ T   +Y VKP +    P A
Sbjct: 18  LLHISPAEELYFGSIESGEKKTLIVLTNV-TKNIVAFKVRTTAPEKYRVKPSNSSCDPGA 76

Query: 64  TLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTRKKQ 123
           ++ + ++ H               D FL+ +  +  +             S ++    + 
Sbjct: 77  SIDIIVSPH-------GGLTVSAQDRFLIMAAEMEQSSGTGPAE-----LSQFWKEVPRN 124

Query: 124 VFIDSGIKIMFVGSP 138
             ++  ++   V S 
Sbjct: 125 KVMEHRLRCHTVESS 139

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 82.0 bits (202), Expect = 2e-17
 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 10/131 (7%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTK------DGNTALHLAVEDRRRDC---ARLLL 293
            +  A+    L  +      G +                 LHLAV+   +        ++
Sbjct: 154 RLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII 213

Query: 294 ANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHS 353
            NG   D + A DG+T LH  A       +KLLL+  A     N++G+TA D+A +  H 
Sbjct: 214 QNGGHLDAKAA-DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHK 272

Query: 354 RLFDALKLGDS 364
              + L+   +
Sbjct: 273 ECEELLEQAQA 283

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 80.0 bits (197), Expect = 9e-17
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 236 SETSTWGPIHLALR---GGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLL 292
           ++      +HLA++      L ++  ++  G +++A   DGNTALH A    + DC +LL
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 245

Query: 293 LANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKY 334
           L   A     N   G+T L I     +++  +LL Q  A  +
Sbjct: 246 LKGRALVGTVN-EAGETALDIARKKHHKECEELLEQAQAGTF 286

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 77.7 bits (191), Expect = 6e-16
 Identities = 22/83 (26%), Positives = 40/83 (48%)

Query: 366 CVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE 425
              A +  +  +  +I+ G  ++ K   G TALH A+   + + +++L+     V   +E
Sbjct: 198 VKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE 257

Query: 426 DGYTALHCAVESGHTDVTELLVK 448
            G TAL  A +  H +  ELL +
Sbjct: 258 AGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 77.3 bits (190), Expect = 7e-16
 Identities = 28/124 (22%), Positives = 42/124 (33%), Gaps = 9/124 (7%)

Query: 366 CVAARKGEVRTMQRLIEAGAAINGKDL------HGWTALHRASFKGK---IEVVRMLIDK 416
             A    ++ ++      G                   LH A        + +V  +I  
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215

Query: 417 GIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGIS 476
           G  +DAK  DG TALH A      D  +LL+K  A V        + + IA   H+    
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275

Query: 477 RILM 480
            +L 
Sbjct: 276 ELLE 279

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 69.6 bits (170), Expect = 3e-13
 Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 8/123 (6%)

Query: 178 HIAIAQRRPDIVQLLLEFGPDVESQGRCGCS-----TPLEAAAAAGEA---LIVELLLAR 229
             AI  R    V      G D         +       L  A          +V+ ++  
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215

Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCA 289
               +         +H A      + LKLLL   A V  + + G TAL +A +   ++C 
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275

Query: 290 RLL 292
            LL
Sbjct: 276 ELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 27/154 (17%), Positives = 45/154 (29%), Gaps = 29/154 (18%)

Query: 270 TKDGNTALHLAVEDRRRDCARLLLANGA-----RPDIRNARDGDTPLHITASLGYE---Q 321
                  L  A+ +R         ANG       P        +  LH+   +  +    
Sbjct: 148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP 207

Query: 322 MVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLI 381
           +V  ++Q G +   +   G TA   AA                            ++ L+
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDC---------------------LKLLL 246

Query: 382 EAGAAINGKDLHGWTALHRASFKGKIEVVRMLID 415
           +  A +   +  G TAL  A  K   E   +L  
Sbjct: 247 KGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147

 Score = 77.8 bits (191), Expect = 3e-17
 Identities = 25/137 (18%), Positives = 57/137 (41%), Gaps = 14/137 (10%)

Query: 2   DRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISP 61
           ++++ L+P + +  +       +  L L+N      V F+++ T   RY V+P SGII P
Sbjct: 12  EQILVLDPPSDLKFKGPFTDVVTTNLKLQNP-SDRKVCFKVKTTAPRRYCVRPNSGIIDP 70

Query: 62  LATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTRK 121
            + ++V +           D        F++ ++  P          +  + + W   + 
Sbjct: 71  GSIVTVSVMLQ----PFDYDPNEKSKHKFMVQTIFAPPN--------ISDMEAVWKEAKP 118

Query: 122 KQVFIDSGIKIMFVGSP 138
            ++ +DS ++ +F    
Sbjct: 119 DEL-MDSKLRCVFEMPN 134

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128

 Score = 76.2 bits (187), Expect = 7e-17
 Identities = 24/134 (17%), Positives = 57/134 (42%), Gaps = 14/134 (10%)

Query: 1   MDRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIIS 60
            ++++ L+P + +  +       +  L L+N      V F+++ T   RY V+P SG+I 
Sbjct: 7   HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNP-SDRKVCFKVKTTAPRRYCVRPNSGVID 65

Query: 61  PLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTR 120
           P + ++V +           D        F++ ++  P          +  + + W   +
Sbjct: 66  PGSIVTVSVMLQ----PFDYDPNEKSKHKFMVQTIFAPPN--------ISDMEAVWKEAK 113

Query: 121 KKQVFIDSGIKIMF 134
             ++ +DS ++ +F
Sbjct: 114 PDEL-MDSKLRCVF 126

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 79.4 bits (195), Expect = 3e-16
 Identities = 36/143 (25%), Positives = 55/143 (38%), Gaps = 1/143 (0%)

Query: 159 SDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCG-CSTPLEAAAAA 217
                +    +   G  L   +        +   L  G DV         +TPL  A AA
Sbjct: 186 KPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA 245

Query: 218 GEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTAL 277
              L  E LL   A+  +++++  GP+H A   GH  +  L L +GA++ A   +G   L
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305

Query: 278 HLAVEDRRRDCARLLLANGARPD 300
            +A+E    D   LL     R  
Sbjct: 306 TIAMETANADIVTLLRLAKMREA 328

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 76.7 bits (188), Expect = 2e-15
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 3/124 (2%)

Query: 245 HLALRGGHLEVLKLLLIKGANVNALT--KDGNTALHLAVEDRRRDCARLLLANGARPDIR 302
             +     L  +   L  GA+VN +   +D  T L  A           LL NGA  +  
Sbjct: 205 RASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA 264

Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLG 362
           ++  G  PLH    LG+  +  L L++GA+   R+  G+    +A E  ++ +   L+L 
Sbjct: 265 DS-AGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323

Query: 363 DSLC 366
               
Sbjct: 324 KMRE 327

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 76.0 bits (186), Expect = 5e-15
 Identities = 36/156 (23%), Positives = 55/156 (35%), Gaps = 2/156 (1%)

Query: 328 QKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAI 387
           Q         +    +     E     L            +     + TM   +  GA +
Sbjct: 167 QPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADV 226

Query: 388 NGK--DLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTEL 445
           N         T L +A+    +     L+  G +V+  D  G   LH A   GHT +  L
Sbjct: 227 NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACL 286

Query: 446 LVKKGADVEARTSKNVSPMQIAECLHYAGISRILMH 481
            +K+GAD+ AR S+   P+ IA     A I  +L  
Sbjct: 287 FLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 71.4 bits (174), Expect = 1e-13
 Identities = 31/129 (24%), Positives = 40/129 (31%), Gaps = 3/129 (2%)

Query: 208 STPLEAAAAAGEALIVELLLARKASTERSETSTWG--PIHLALRGGHLEVLKLLLIKGAN 265
           +    A+        +   LA  A             P+  A     L   + LL  GAN
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260

Query: 266 VNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKL 325
           VN     G   LH A        A L L  GA    R+  +G  PL I        +V L
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD-SEGRDPLTIAMETANADIVTL 319

Query: 326 LLQKGANKY 334
           L      + 
Sbjct: 320 LRLAKMREA 328

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 163 WNPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEA 220
            N A+   AD+ G+  LH A       +  L L+ G D+ ++   G   PL  A     A
Sbjct: 256 QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG-RDPLTIAMETANA 314

Query: 221 LIVELLLARKASTERSETST 240
            IV LL   K     +    
Sbjct: 315 DIVTLLRLAKMREAEAAQGQ 334

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 394 GWTALHRASFKGKIEVVRMLIDKGIDVDAK--DEDGYTALHCAVESGHTDVTELLVKKGA 451
           G      +     +  +   +  G DV+     +D  T L  A  +      E L++ GA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259

Query: 452 DVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
           +V    S    P+  A  L + G++ + +  GA
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 74.6 bits (183), Expect = 2e-14
 Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 9/127 (7%)

Query: 365 LCVAARKGEVRTMQRLIEAGAAINGK------DLHGWTALHRA---SFKGKIEVVRMLID 415
           L  A    ++ ++      G                   LH A   + +  + +V  +I 
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 416 KGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGI 475
            G  +DAK  DG TALH A      D  +LL+K  A V        + + IA   H+   
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255

Query: 476 SRILMHG 482
             +L   
Sbjct: 256 EELLEQA 262

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 74.2 bits (182), Expect = 3e-14
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 10/127 (7%)

Query: 247 ALRGGHLEVLKLLLIKGANVNA------LTKDGNTALHLAVEDRRRD---CARLLLANGA 297
           A+    L  +      G +                 LHLAV+   +        ++ NG 
Sbjct: 139 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 198

Query: 298 RPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFD 357
             D + A DG+T LH  A       +KLLL+  A     N++G+TA D+A +  H    +
Sbjct: 199 HLDAKAA-DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE 257

Query: 358 ALKLGDS 364
            L+   +
Sbjct: 258 LLEQAQA 264

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 9/118 (7%)

Query: 150 DDLREVL----ERSDPAWN-PADSADAQGQTLLHIAIAQRRPD---IVQLLLEFGPDVES 201
            DL  VL       D     P   A A  + +LH+A+         +V  +++ G  +++
Sbjct: 143 RDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA 202

Query: 202 QGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLL 259
           +   G +T L  AA   +   ++LLL  +A       +    + +A +  H E  +LL
Sbjct: 203 KAADG-NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 9/99 (9%)

Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAK------DEDGYTALHCAVESGHTD---VTELLVK 448
           L  A     +  V      G D                 LH AV+  +     + + +++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 449 KGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKD 487
            G  ++A+ +   + +  A   +     ++L+ G A   
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 12/114 (10%)

Query: 4   LVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLA 63
            ++ +PS  +        K +  + + N      + + I+ TN  R +V P  G++ P  
Sbjct: 8   DINTQPSQKIVFNAPYDDKHTYHIKITNA-GGRRIGWAIKTTNMRRLSVDPPCGVLDPKE 66

Query: 64  TLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWF 117
            + + ++      +    +    +D   +     P    K           +WF
Sbjct: 67  KVLMAVSCD----TFNAATEDLNNDRITIEWTNTPDGAAKQ-------FRREWF 109

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 15/105 (14%)

Query: 4   LVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLA 63
           +++++P          G        + +      +AF+++ +N   Y V+P  G +    
Sbjct: 10  MINVDPPTGN-YPATGGNS---THNITSE-SDSRLAFKVKSSNNEHYRVRPVYGFVDAKG 64

Query: 64  TLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATST 108
              ++I   LP         P  +D  ++    VP A   D  + 
Sbjct: 65  KSKLDI-NRLPG--------PPKEDKIVIQYAEVP-AEETDPMAP 99

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 17/99 (17%)

Query: 13  VAIRIEP------GQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLS 66
           +++  +P          S    L N      + F+I+ +N   Y + P  G + P  +  
Sbjct: 1   MSLTADPPACTVPAAGVSSTHKLVNG-GAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKD 59

Query: 67  VEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDA 105
           V I      G          +D  ++H    P A   DA
Sbjct: 60  VVITRT--AG-------APKEDKLVVHFASAP-ADATDA 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 9e-06
 Identities = 82/597 (13%), Positives = 156/597 (26%), Gaps = 219/597 (36%)

Query: 14  AIRIEPGQKCSGELTL----RNVMHTMPVAF------RIQPTNKAR---YTVKPQSGII- 59
            I+ E  Q  S    +    R+ ++     F      R+QP  K R     ++P   ++ 
Sbjct: 97  PIKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 60  --------SPLATLSVEIAYHLPPGSVLPD-----SFPHCDDSF--------LLHSVVVP 98
                   + +A   +++         +       +  +C+           LL+ +   
Sbjct: 156 DGVLGSGKTWVA---LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 99  GAGIKDATST---------------------------LDSV--PSDW--F--------TT 119
                D +S                            L +V     W  F        TT
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 120 RKKQVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHI 179
           R KQV  D           +         +D     L               + ++LL  
Sbjct: 273 RFKQV-TDF----------LSAATTTHISLDHHSMTLT------------PDEVKSLLLK 309

Query: 180 AIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETS 239
            +  R  D+        P          + P         ++I E +        R   +
Sbjct: 310 YLDCRPQDL--------PREV----LTTN-PRRL------SIIAESI--------RDGLA 342

Query: 240 TWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR--DCARLLLANGA 297
           TW          H+   KL  I  +++N L            E R+     +        
Sbjct: 343 TWDNWK------HVNCDKLTTIIESSLNVLEPA---------EYRKMFDRLSVF------ 381

Query: 298 RPDIRNARDGDTPLHITASLGY-------EQMVKLLLQKG-ANKYIRNKSGKTAYDVAAE 349
            P          P  + + + +         +V  L +     K  + K    +      
Sbjct: 382 -PP-----SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--QPKESTISI----- 428

Query: 350 CGHSRLFDALKLGDSLCVAARKGEVRTM-QRLIEAGAAINGKDLHGWTAL---------- 398
              S   +     +             + + +++        D                 
Sbjct: 429 --PSIYLELKVKLE---------NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 399 --H--RASFKGKIEVVRMLIDKGID---VDAKDEDGYTALHCAVESGHTDVTELLVKKG- 450
             H        ++ + RM+    +D   ++ K     TA   A  S    + +L   K  
Sbjct: 478 GHHLKNIEHPERMTLFRMVF---LDFRFLEQKIRHDSTAW-NASGSILNTLQQLKFYKPY 533

Query: 451 -ADVEARTSKNVSP-----MQIAECLH---YAGISRI-LMHGGATKDGIQQTNLRQV 497
             D + +  + V+       +I E L    Y  + RI LM      + I +   +QV
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA---EDEAIFEEAHKQV 587

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	541
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69
2cri_A	147	Vesicle-associated membrane protein-associated pro	99.48
1z9l_A	128	Vesicle-associated membrane protein-associated pro	99.46
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	99.44
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	99.32
1row_A	109	SSP-19, MSP-domain protein like family member; bet	99.08
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	99.05
3qbt_B	140	Inositol polyphosphate 5-phosphatase OCRL-1; prote	89.17
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	87.57
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	84.52
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	80.99

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.4e-62  Score=503.22  Aligned_cols=380  Identities=28%  Similarity=0.385  Sum_probs=359.8

Q ss_pred             ecCcHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHH
Q 037006          134 FVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEA  213 (541)
Q Consensus       134 ~~g~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~  213 (541)
                      ..|.|+|+.|+..|+.++|++|++++..    .+..+..|.||||+|+..|+.++|++|+++|++++..+.. |.||||+
T Consensus        12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~----~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~   86 (437)
T 1n11_A           12 ESGLTPLHVASFMGHLPIVKNLLQRGAS----PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD-DQTPLHC   86 (437)
T ss_dssp             ---CCHHHHHHHHTCHHHHHHHHHTTCC----SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTT-SCCHHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-CCCHHHH
Confidence            3578999999999999999999998642    5678889999999999999999999999999999988877 8999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHH
Q 037006          214 AAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLL  293 (541)
Q Consensus       214 A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll  293 (541)
                      |+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+++++..+..|.||||+|+..|+.+++++|+
T Consensus        87 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  166 (437)
T 1n11_A           87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL  166 (437)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhc------------
Q 037006          294 ANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKL------------  361 (541)
Q Consensus       294 ~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~------------  361 (541)
                      ++|++++..+ ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|..            
T Consensus       167 ~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  245 (437)
T 1n11_A          167 ERDAHPNAAG-KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG  245 (437)
T ss_dssp             HTTCCTTCCC-SSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             hCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            9999999887 789999999999999999999999999999999999999999999999999999843            


Q ss_pred             CCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHH
Q 037006          362 GDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTD  441 (541)
Q Consensus       362 ~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~  441 (541)
                      .++++.|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus       246 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~  325 (437)
T 1n11_A          246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK  325 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSH
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCCcccccchhhhhhcCCCccccccccccCccc
Q 037006          442 VTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNGKVGRDQMEGKFGMKK  519 (541)
Q Consensus       442 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  519 (541)
                      +|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..+.+++.++...++..+.+++.......
T Consensus       326 ~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~~~  403 (437)
T 1n11_A          326 LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDET  403 (437)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCC
T ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999988887776655433

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.3e-58  Score=474.89  Aligned_cols=356  Identities=31%  Similarity=0.439  Sum_probs=337.4

Q ss_pred             hhhhhhcCCceee---cCcHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCC
Q 037006          122 KQVFIDSGIKIMF---VGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPD  198 (541)
Q Consensus       122 ~~~~~~~~~~~~~---~g~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  198 (541)
                      .+.+++.|.++..   .|.|+|+.|+..|+.+++++|++.+..    ++.+|..|.||||+|+..|+.++|++|+++|++
T Consensus        30 v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  105 (437)
T 1n11_A           30 VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK----VNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN  105 (437)
T ss_dssp             HHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC----SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC----CCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC
Confidence            3567777776653   478999999999999999999998743    677889999999999999999999999999999


Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHH
Q 037006          199 VESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALH  278 (541)
Q Consensus       199 ~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~  278 (541)
                      ++..+.. |.||||+|+..|+.+++++|++++++.+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus       106 ~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~  184 (437)
T 1n11_A          106 PNLATTA-GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLH  184 (437)
T ss_dssp             TTCCCTT-CCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHH
T ss_pred             CCCCCCC-CCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence            9988877 899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHH
Q 037006          279 LAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDA  358 (541)
Q Consensus       279 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~  358 (541)
                      +|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++
T Consensus       185 ~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~  263 (437)
T 1n11_A          185 VAVHHNNLDIVKLLLPRGGSPHSPA-WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL  263 (437)
T ss_dssp             HHHHTTCHHHHHHHGGGTCCSCCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence            9999999999999999999998876 789999999999999999999999999999999999999999999999999999


Q ss_pred             hhc------------CCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC
Q 037006          359 LKL------------GDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDED  426 (541)
Q Consensus       359 l~~------------~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~  426 (541)
                      |..            .++++.|+..|+.+++++|+++|++++.++..|+||||+|+..|+.++|++|+++|+++|.+|..
T Consensus       264 Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~  343 (437)
T 1n11_A          264 LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL  343 (437)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTT
T ss_pred             HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCC
Confidence            843            35799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCC
Q 037006          427 GYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG  483 (541)
Q Consensus       427 g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~g  483 (541)
                      |+||||+|+..|+.++|++|+++|++++.+|..|+||+++|...|+.+++++|....
T Consensus       344 g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~  400 (437)
T 1n11_A          344 GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT  400 (437)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred             CCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999998654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=4.7e-51  Score=406.54  Aligned_cols=296  Identities=30%  Similarity=0.355  Sum_probs=272.8

Q ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhc
Q 037006          171 AQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRG  250 (541)
Q Consensus       171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~  250 (541)
                      .+|.|+||.||..|+.++|++||++|++++.++...|.||||+|+..|+.++|++|+++|++++..+..+.++++.++..
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence            45789999999999999999999999999988877689999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccC---------CCCCCcHHHHHHHcCCHH
Q 037006          251 GHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRN---------ARDGDTPLHITASLGYEQ  321 (541)
Q Consensus       251 g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~---------~~~g~t~L~~A~~~g~~~  321 (541)
                      ++..++..++..+++++..|..|.|||++|+..|+.+++++|+++|++++...         ...|.||||+|+..|+.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~  182 (337)
T 4g8k_A          103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  182 (337)
T ss_dssp             TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred             ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence            99999999999999999999999999999999999999999999999987543         245899999999999999


Q ss_pred             HHHHHHH-cCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHH
Q 037006          322 MVKLLLQ-KGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHR  400 (541)
Q Consensus       322 ~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~  400 (541)
                      ++++|++ .|++++..|..|.|+++.++..++..                 +...++++|+++|+++|.+|..|+||||+
T Consensus       183 ~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~-----------------~~~~i~~lLl~~gad~n~~d~~g~t~L~~  245 (337)
T 4g8k_A          183 VLKILLDEMGADVNACDNMGRNALIHALLSSDDS-----------------DVEAITHLLLDHGADVNVRGERGKTPLIL  245 (337)
T ss_dssp             HHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTT-----------------THHHHHHHHHHTTCCTTCCCGGGCCHHHH
T ss_pred             HHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcc-----------------cHHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            9999996 69999999999999999887655432                 12346889999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHH
Q 037006          401 ASFKGKIEVVRMLIDK-GIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL  479 (541)
Q Consensus       401 Aa~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  479 (541)
                      |+..|+.+++++|++. |+++|.+|..|+||||+|++.|+.++|++|+++||++|.+     +||++|+..|+.+++++|
T Consensus       246 a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~L  320 (337)
T 4g8k_A          246 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVL  320 (337)
T ss_dssp             HHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHH
Confidence            9999999999999986 8999999999999999999999999999999999999764     699999999999999999


Q ss_pred             HhCCCCCCC
Q 037006          480 MHGGATKDG  488 (541)
Q Consensus       480 l~~ga~~~~  488 (541)
                      +++||+++.
T Consensus       321 l~~GA~~d~  329 (337)
T 4g8k_A          321 LSHGAKEDF  329 (337)
T ss_dssp             HHTTCCC--
T ss_pred             HHCcCCCCC
Confidence            999999874

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=8.6e-48  Score=382.98  Aligned_cols=292  Identities=29%  Similarity=0.360  Sum_probs=263.3

Q ss_pred             eecCcHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCC-CCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHH
Q 037006          133 MFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADA-QGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPL  211 (541)
Q Consensus       133 ~~~g~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L  211 (541)
                      ...|.++|+.||+.|+.++|+.||+++..    ++.++. .|+||||+||..|+.++|++|+++|++++..+.. +.+++
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gad----vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~-~~~~~   96 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGAN----VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN-GATPF   96 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCC----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-CCCHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCC----CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccC-CCchh
Confidence            34577899999999999999999998742    555654 5999999999999999999999999999998887 89999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCC----------CCCCChHHHHHH
Q 037006          212 EAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNAL----------TKDGNTALHLAV  281 (541)
Q Consensus       212 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~----------d~~g~t~L~~A~  281 (541)
                      +.++..+...++..+++.+++++..+..|+||||+|+..|+.+++++|+++|++++..          +..|.||||+|+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~  176 (337)
T 4g8k_A           97 ILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA  176 (337)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHH
T ss_pred             HHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988754          456899999999


Q ss_pred             HhCCHHHHHHHHH-CCCCCCccCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHH
Q 037006          282 EDRRRDCARLLLA-NGARPDIRNARDGDTPLHITASLGY----EQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLF  356 (541)
Q Consensus       282 ~~g~~~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~  356 (541)
                      ..|+.++|++|++ .|++++..+ ..|.|+++.++..+.    ..++++|+++|++++.+|..|+||||+|+..|+.++ 
T Consensus       177 ~~g~~~~v~~LL~~~gad~n~~d-~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~-  254 (337)
T 4g8k_A          177 EKGHVEVLKILLDEMGADVNACD-NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL-  254 (337)
T ss_dssp             HHTCHHHHHHHHHHSCCCTTCCC-TTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHH-
T ss_pred             HCCCHHHHHHHHhccCCCcCccC-CCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHH-
Confidence            9999999999995 699999887 789999998886544    468999999999999999999999999988777665 


Q ss_pred             HHhhcCCchHHHHhhCCHHHHHHHHH-cCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHH
Q 037006          357 DALKLGDSLCVAARKGEVRTMQRLIE-AGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAV  435 (541)
Q Consensus       357 ~~l~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~  435 (541)
                                          +++|++ .|++++.+|.+|+||||+|+..|+.++|++|+++|+|+|.+     +|||+|+
T Consensus       255 --------------------v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~  309 (337)
T 4g8k_A          255 --------------------VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTAR  309 (337)
T ss_dssp             --------------------HHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHH
T ss_pred             --------------------HHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHH
Confidence                                566676 48999999999999999999999999999999999999865     5999999


Q ss_pred             HcCCHHHHHHHHHCCCCCccc
Q 037006          436 ESGHTDVTELLVKKGADVEAR  456 (541)
Q Consensus       436 ~~g~~~~v~~Ll~~ga~~~~~  456 (541)
                      ++|+.++|++||++||++|..
T Consensus       310 ~~~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          310 RNYDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             HTTCHHHHHHHHHTTCCC---
T ss_pred             HcCCHHHHHHHHHCcCCCCCC
Confidence            999999999999999999863

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.3e-47  Score=367.98  Aligned_cols=270  Identities=31%  Similarity=0.374  Sum_probs=229.7

Q ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhc
Q 037006          171 AQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRG  250 (541)
Q Consensus       171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~  250 (541)
                      .+|.|+||+|+..|+.++|++|++.|++++......|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            35789999999999999999999999999888555689999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccC---------CCCCCcHHHHHHHcCCHH
Q 037006          251 GHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRN---------ARDGDTPLHITASLGYEQ  321 (541)
Q Consensus       251 g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~---------~~~g~t~L~~A~~~g~~~  321 (541)
                      |+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.|++++...         +..|.||||+|+..|+.+
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T 1wdy_A           83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999999999988763         356888888888888888


Q ss_pred             HHHHHHHc-CCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHH
Q 037006          322 MVKLLLQK-GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHR  400 (541)
Q Consensus       322 ~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~  400 (541)
                      ++++|++. |++++..+..|.||+|+|+..++.+.+                 .+++++|+++|++++.++..|+||||+
T Consensus       163 ~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~-----------------~~i~~~Ll~~g~~~~~~~~~g~t~L~~  225 (285)
T 1wdy_A          163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV-----------------EAITHLLLDHGADVNVRGERGKTPLIL  225 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTH-----------------HHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             HHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchH-----------------HHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence            88888886 888888888888888887776663211                 345777778888888777788888888


Q ss_pred             HHhcCCHHHHHHHHH-cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccC
Q 037006          401 ASFKGKIEVVRMLID-KGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART  457 (541)
Q Consensus       401 Aa~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~  457 (541)
                      |+..|+.+++++|++ .|++++.+|..|+||||+|++.|+.+++++|+++|++++.+|
T Consensus       226 A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             HHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence            888888888888887 678888888888888888888888888888888888877766

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=7.9e-47  Score=377.70  Aligned_cols=312  Identities=26%  Similarity=0.321  Sum_probs=286.3

Q ss_pred             cCcHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHH
Q 037006          135 VGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAA  214 (541)
Q Consensus       135 ~g~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A  214 (541)
                      .+.++|+.|++.|+.+.+++++.....   .++..|..|.||||+|+..|+.++|++|+++|++++..+.. |.||||+|
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A   98 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTPLNV---NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG-GLVPLHNA   98 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTT---TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-CCCHHHHH
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHhcCC---CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC-CCcHHHHH
Confidence            356899999999999999999987543   36778899999999999999999999999999999998876 99999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHH
Q 037006          215 AAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLA  294 (541)
Q Consensus       215 ~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~  294 (541)
                      +..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++..+..|.||+++|+..+..+.+.+...
T Consensus        99 ~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~  178 (351)
T 3utm_A           99 CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK  178 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888888764


Q ss_pred             CCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCH
Q 037006          295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEV  374 (541)
Q Consensus       295 ~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~  374 (541)
                                   .+++..++..++.+.++.++..+......+..|.||||+|+..++.                  +..
T Consensus       179 -------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~------------------~~~  227 (351)
T 3utm_A          179 -------------GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHP------------------KRK  227 (351)
T ss_dssp             -------------HHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCST------------------THH
T ss_pred             -------------ccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCc------------------cHH
Confidence                         2578889999999999999988877777888999999999988663                  234


Q ss_pred             HHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCc
Q 037006          375 RTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVE  454 (541)
Q Consensus       375 ~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~  454 (541)
                      +++++|+++|++++.++..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus       228 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~  307 (351)
T 3utm_A          228 QVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS  307 (351)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q 037006          455 ARTSKNVSPMQIAECLHYAGISRILMHGGAT  485 (541)
Q Consensus       455 ~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~  485 (541)
                      .+|..|+||+++|    ..+++++|.+.+..
T Consensus       308 ~~~~~g~tal~~a----~~~~~~~l~~~~~~  334 (351)
T 3utm_A          308 IISLQGFTAAQMG----NEAVQQILSESTPM  334 (351)
T ss_dssp             CCCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred             CcCCCCCChhhhh----hHHHHHHHHhcccc
Confidence            9999999999998    67899999987654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.9e-46  Score=362.16  Aligned_cols=262  Identities=29%  Similarity=0.379  Sum_probs=248.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCC
Q 037006          207 CSTPLEAAAAAGEALIVELLLARKASTERS-ETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRR  285 (541)
Q Consensus       207 ~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~-~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~  285 (541)
                      |.|+|+.|+..|+.+++++|++.|++++.. +..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   84 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC
Confidence            789999999999999999999999999987 7889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc----------ccCCCchhHHHHHcCCHHH
Q 037006          286 RDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIR----------NKSGKTAYDVAAECGHSRL  355 (541)
Q Consensus       286 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----------~~~g~t~l~~A~~~g~~~~  355 (541)
                      .+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|++++..          +..|.||||+|+..|+.+ 
T Consensus        85 ~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~-  162 (285)
T 1wdy_A           85 VKLLKLFLSKGADVNECD-FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE-  162 (285)
T ss_dssp             HHHHHHHHHTTCCTTCBC-TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH-
T ss_pred             HHHHHHHHHcCCCCCccC-cccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHH-
Confidence            999999999999999887 78999999999999999999999999998877          778999999888766654 


Q ss_pred             HHHhhcCCchHHHHhhCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHhcCC----HHHHHHHHHcCCCCCCCCCCCChH
Q 037006          356 FDALKLGDSLCVAARKGEVRTMQRLIEA-GAAINGKDLHGWTALHRASFKGK----IEVVRMLIDKGIDVDAKDEDGYTA  430 (541)
Q Consensus       356 ~~~l~~~~~l~~a~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~Aa~~g~----~~~v~~Ll~~g~d~~~~d~~g~tp  430 (541)
                                          ++++|+++ |++++..+..|+||||+|+..++    .+++++|+++|++++.+|..|+||
T Consensus       163 --------------------~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~  222 (285)
T 1wdy_A          163 --------------------VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP  222 (285)
T ss_dssp             --------------------HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             --------------------HHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcH
Confidence                                57788887 99999999999999999999999    999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHH-CCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCCc
Q 037006          431 LHCAVESGHTDVTELLVK-KGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQ  490 (541)
Q Consensus       431 L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~~~~  490 (541)
                      ||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus       223 L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             HHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence            999999999999999999 899999999999999999999999999999999999987654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=7.2e-47  Score=381.26  Aligned_cols=312  Identities=26%  Similarity=0.292  Sum_probs=223.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC
Q 037006          139 VLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAG  218 (541)
Q Consensus       139 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g  218 (541)
                      .|+.++..|..+.++.++++....        ..-.+++.-+...|+++++++++....+..      |.||||+|+..+
T Consensus        40 ~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------g~t~L~~Aa~~~  105 (373)
T 2fo1_E           40 SLLEASYDGYIKRQRNELQHYSLY--------PNPQGYGNGNDFLGDFNHTNLQIPTEPEPE------SPIKLHTEAAGS  105 (373)
T ss_dssp             --------------------------------------------------------------------CCCHHHHHHHSS
T ss_pred             ccccccCCccccchhhhhhhhccc--------cCccccCCCCCccccccccccccccCCCCC------CccHHHHHhcCC
Confidence            455666667777777666654321        022345666777788888888776543322      788888888855


Q ss_pred             CHHHHHHHHHCCCCCCCCC-CCCchHHHHHHhcCCHHHHHHHH--------HcCCCCCCCCCCCChHHHHHHHhCCHHHH
Q 037006          219 EALIVELLLARKASTERSE-TSTWGPIHLALRGGHLEVLKLLL--------IKGANVNALTKDGNTALHLAVEDRRRDCA  289 (541)
Q Consensus       219 ~~~iv~~Ll~~g~~~~~~~-~~~~t~L~~Aa~~g~~~iv~~Ll--------~~g~~~~~~d~~g~t~L~~A~~~g~~~~v  289 (541)
                      . +++++|+.  .+++..+ ..|+||||+|+..|+.+++++|+        +.|++++..|..|.||||+|+..|+.+++
T Consensus       106 ~-~~~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv  182 (373)
T 2fo1_E          106 Y-AITEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV  182 (373)
T ss_dssp             S-CCCSCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             c-hHHHHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHH
Confidence            4 67777754  4566666 67888888888888887777665        78999999999999999999999999999


Q ss_pred             HHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC---CCccccccCCCchhHHHHHcCCHHHHHHhhcCCchH
Q 037006          290 RLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKG---ANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLC  366 (541)
Q Consensus       290 ~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~  366 (541)
                      ++|+++|++++..+ ..|.||||+|+..|+.+++++|++.+   ++++..|..|.||||+|+..+..             
T Consensus       183 ~~Ll~~ga~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~-------------  248 (373)
T 2fo1_E          183 AYLMKAGADPTIYN-KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR-------------  248 (373)
T ss_dssp             HHHHHTTCCSCCCC-TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCST-------------
T ss_pred             HHHHHCCCCCcccC-CCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCc-------------
Confidence            99999999998777 67899999999999999999999887   78888899999999988876631             


Q ss_pred             HHHhhCCHHHHHHHHHcCCCCCC--------CCCCCChHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCChHHHHHHHc
Q 037006          367 VAARKGEVRTMQRLIEAGAAING--------KDLHGWTALHRASFKGKIEVVRMLIDKG-IDVDAKDEDGYTALHCAVES  437 (541)
Q Consensus       367 ~a~~~~~~~~~~~Ll~~g~~~~~--------~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpL~~A~~~  437 (541)
                           .+.+++++|+++|++++.        .|..|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..
T Consensus       249 -----~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~  323 (373)
T 2fo1_E          249 -----DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE  323 (373)
T ss_dssp             -----THHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH
T ss_pred             -----chHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHc
Confidence                 134568888999988876        5678999999999999999999999886 99999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCC
Q 037006          438 GHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATK  486 (541)
Q Consensus       438 g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~  486 (541)
                      |+.++|++|+++|++++.+|..|+|||++|+..|+.+++++|+++|++.
T Consensus       324 g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          324 GRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             TCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             CCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            9999999999999999999999999999999999999999999998864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.2e-45  Score=369.14  Aligned_cols=291  Identities=29%  Similarity=0.318  Sum_probs=201.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHH
Q 037006          209 TPLEAAAAAGEALIVELLLAR-KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRD  287 (541)
Q Consensus       209 t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~  287 (541)
                      ++|+.|+..|+.++++.|+.. +.+++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+
T Consensus        26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~  105 (351)
T 3utm_A           26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYE  105 (351)
T ss_dssp             HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHH
Confidence            344444444444433333332 3344444444444444444444444444444444444444444555555555555555


Q ss_pred             HHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHH
Q 037006          288 CARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCV  367 (541)
Q Consensus       288 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~  367 (541)
                      ++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++..+..|.+++++|+..+..+.+.+.....++..
T Consensus       106 iv~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~  184 (351)
T 3utm_A          106 VTELLLKHGACVNAMD-LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ  184 (351)
T ss_dssp             HHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHH
Confidence            5555555555444443 344555555555555555555555555555555555555555555544444444444455667


Q ss_pred             HHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHH
Q 037006          368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFK---GKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTE  444 (541)
Q Consensus       368 a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~  444 (541)
                      ++..+..+.++.++..+......+..|.||||+|+..   +..+++++|++.|++++.+|..|+||||+|+..|+.++++
T Consensus       185 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~  264 (351)
T 3utm_A          185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME  264 (351)
T ss_dssp             HHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            7778888888888888776666788999999999999   5689999999999999999999999999999999999999


Q ss_pred             HHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCCcccccchhhhh
Q 037006          445 LLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQ  500 (541)
Q Consensus       445 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~  500 (541)
                      +|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..+.+++.++
T Consensus       265 ~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a  320 (351)
T 3utm_A          265 VLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG  320 (351)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh
Confidence            99999999999999999999999999999999999999999999999999988775

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=6.6e-45  Score=366.91  Aligned_cols=281  Identities=23%  Similarity=0.236  Sum_probs=233.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC
Q 037006          139 VLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAG  218 (541)
Q Consensus       139 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g  218 (541)
                      ++..+...|+.+.++.++...         .|..|.||||+|+..+. +++++|+.  .+++..+...|.||||+|+..|
T Consensus        69 ~~~~~~~~g~~~~~~~~~~~~---------~~~~g~t~L~~Aa~~~~-~~~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g  136 (373)
T 2fo1_E           69 YGNGNDFLGDFNHTNLQIPTE---------PEPESPIKLHTEAAGSY-AITEPITR--ESVNIIDPRHNRTVLHWIASNS  136 (373)
T ss_dssp             ----------------------------------CCCHHHHHHHSSS-CCCSCCST--TTTTTCCCSSCCCHHHHHHCTT
T ss_pred             cCCCCCccccccccccccccC---------CCCCCccHHHHHhcCCc-hHHHHhcc--ccccccCCcCCCCHHHHHHHCC
Confidence            345566678888887765543         46789999999999654 88888865  4666677445999999999999


Q ss_pred             CHHHHHHHH--------HCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHH
Q 037006          219 EALIVELLL--------ARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCAR  290 (541)
Q Consensus       219 ~~~iv~~Ll--------~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~  290 (541)
                      +.+++++|+        +.|++++..+..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.++++
T Consensus       137 ~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~  216 (373)
T 2fo1_E          137 SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMV  216 (373)
T ss_dssp             CCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHH
Confidence            998888776        899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCC---CCCCccCCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCccc--------cccCCCchhHHHHHcCCHHHH
Q 037006          291 LLLANG---ARPDIRNARDGDTPLHITASLG---YEQMVKLLLQKGANKYI--------RNKSGKTAYDVAAECGHSRLF  356 (541)
Q Consensus       291 ~Ll~~g---~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~--------~~~~g~t~l~~A~~~g~~~~~  356 (541)
                      +|++.+   ++++..+ ..|.||||+|+..+   +.+++++|++.|++++.        .+..|.||||+|+..|+.++ 
T Consensus       217 ~Ll~~~~~~~~~~~~d-~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~-  294 (373)
T 2fo1_E          217 YMLNSTKLKGDIEELD-RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI-  294 (373)
T ss_dssp             HHTTSHHHHHTTSCCC-TTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHH-
T ss_pred             HHHhcCccccChhhcC-CCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHH-
Confidence            999998   7888777 78999999999998   89999999999999876        56789999999987776654 


Q ss_pred             HHhhcCCchHHHHhhCCHHHHHHHHHcC-CCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHH
Q 037006          357 DALKLGDSLCVAARKGEVRTMQRLIEAG-AAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAV  435 (541)
Q Consensus       357 ~~l~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~  435 (541)
                                          +++|++++ ++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+
T Consensus       295 --------------------v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~  354 (373)
T 2fo1_E          295 --------------------VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQ  354 (373)
T ss_dssp             --------------------HHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHH
T ss_pred             --------------------HHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHH
Confidence                                77788775 999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCC
Q 037006          436 ESGHTDVTELLVKKGADV  453 (541)
Q Consensus       436 ~~g~~~~v~~Ll~~ga~~  453 (541)
                      .+|+.+++++|+++|++-
T Consensus       355 ~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          355 ANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             HTTCHHHHHHHHTTC---
T ss_pred             HcCCHHHHHHHHhcCccc
Confidence            999999999999998763

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=9.4e-44  Score=344.89  Aligned_cols=256  Identities=26%  Similarity=0.354  Sum_probs=128.8

Q ss_pred             CCCCccHHHHHHHcCCHHHHHHHHhcCCC-----------CcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q 037006          170 DAQGQTLLHIAIAQRRPDIVQLLLEFGPD-----------VESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSET  238 (541)
Q Consensus       170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~  238 (541)
                      ...|.|+||+|+..|+.+.+..++..+..           ++..+. .|.||||+|+..|+.+++++|++.|++++..+.
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~   90 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAV-SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA   90 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSC-CSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCc-cCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            35788888888888887766666554422           111222 255555555555555555555555555555555


Q ss_pred             CCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcC
Q 037006          239 STWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLG  318 (541)
Q Consensus       239 ~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g  318 (541)
                      .|+||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++.|++++...  .|.||||+|+..|
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~g~t~L~~A~~~g  168 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES--DLASPIHEAARRG  168 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC--TTSCHHHHHHHHT
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC--CCCCHHHHHHHcC
Confidence            55556666665556666666665555555555555666666666666666666665555554332  3555555555555


Q ss_pred             CHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHH
Q 037006          319 YEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTAL  398 (541)
Q Consensus       319 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L  398 (541)
                      +.+++++|++.|+                                                      +++.+|..|+|||
T Consensus       169 ~~~~v~~Ll~~g~------------------------------------------------------~~~~~d~~g~t~L  194 (285)
T 3d9h_A          169 HVECVNSLIAYGG------------------------------------------------------NIDHKISHLGTPL  194 (285)
T ss_dssp             CHHHHHHHHHTTC------------------------------------------------------CTTCCBTTTBCHH
T ss_pred             CHHHHHHHHHCCC------------------------------------------------------CCCCcCCCCCCHH
Confidence            5555555555544                                                      4445555555666


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHH
Q 037006          399 HRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRI  478 (541)
Q Consensus       399 ~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~  478 (541)
                      |+|+..|+.+++++|+++|++++. |..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|+  ++.+++++
T Consensus       195 ~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~  271 (285)
T 3d9h_A          195 YLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQL  271 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHH
Confidence            666666666666666666666663 555666666666666666666666666666666666666666665  33456666


Q ss_pred             HHhC-CCC
Q 037006          479 LMHG-GAT  485 (541)
Q Consensus       479 Ll~~-ga~  485 (541)
                      |+++ |++
T Consensus       272 Ll~~~~a~  279 (285)
T 3d9h_A          272 FLEREGAS  279 (285)
T ss_dssp             HHHHC---
T ss_pred             HHHhhccC
Confidence            6654 444

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1e-43  Score=344.67  Aligned_cols=250  Identities=24%  Similarity=0.222  Sum_probs=162.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCC-----------CCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCh
Q 037006          207 CSTPLEAAAAAGEALIVELLLARKAS-----------TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNT  275 (541)
Q Consensus       207 ~~t~L~~A~~~g~~~iv~~Ll~~g~~-----------~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t  275 (541)
                      +.|+||+|+..|+.+.+..++..+..           .+..+..|+||||+|+..|+.+++++|++.|++++..|.+|.|
T Consensus        15 ~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t   94 (285)
T 3d9h_A           15 VPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVS   94 (285)
T ss_dssp             ---------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCC
T ss_pred             HHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            78899999999987666666554321           2334444455555555555555555555555555544444445


Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHH
Q 037006          276 ALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRL  355 (541)
Q Consensus       276 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~  355 (541)
                      |||+|+.                                  .|+.+++++|++.|++++..|..|.||||+|+..|+.+ 
T Consensus        95 ~L~~A~~----------------------------------~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~-  139 (285)
T 3d9h_A           95 PLHEACL----------------------------------GGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWD-  139 (285)
T ss_dssp             HHHHHHH----------------------------------TTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHH-
T ss_pred             HHHHHHH----------------------------------CCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHH-
Confidence            5555444                                  44445555555545444445555555555554443332 


Q ss_pred             HHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHH
Q 037006          356 FDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAV  435 (541)
Q Consensus       356 ~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~  435 (541)
                                          ++++|+++|++++. +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus       140 --------------------~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~  198 (285)
T 3d9h_A          140 --------------------CVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC  198 (285)
T ss_dssp             --------------------HHHHHHHTTCCSSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHH
T ss_pred             --------------------HHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence                                24445555555553 335899999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCCcccccchhhhhhcCCCcccccccccc
Q 037006          436 ESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNGKVGRDQMEGKF  515 (541)
Q Consensus       436 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  515 (541)
                      ..|+.+++++|+++|++++. +..|.||||+|+..++.+++++|+++|++++..+..+.+++.++..  +....+++...
T Consensus       199 ~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~--~~~~~~~Ll~~  275 (285)
T 3d9h_A          199 ENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFLER  275 (285)
T ss_dssp             HTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TSHHHHHHHHH
T ss_pred             HcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC--ccHHHHHHHHh
Confidence            99999999999999999995 8899999999999999999999999999999999999999999984  34556665555

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.9e-44  Score=362.76  Aligned_cols=272  Identities=21%  Similarity=0.234  Sum_probs=198.4

Q ss_pred             CCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHH
Q 037006          166 ADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIH  245 (541)
Q Consensus       166 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~  245 (541)
                      .+..|..|.||||+||..|+.++|++|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++.  ..|+||||
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~   89 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRF-GCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIH   89 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-CCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHH
Confidence            4556777888888888888888888888888888777765 77888888888888888888877775443  35677777


Q ss_pred             HHHhcCCHHHHHHHHHc----CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCC-------CCCCccCCCCCCcHHHHH
Q 037006          246 LALRGGHLEVLKLLLIK----GANVNALTKDGNTALHLAVEDRRRDCARLLLANG-------ARPDIRNARDGDTPLHIT  314 (541)
Q Consensus       246 ~Aa~~g~~~iv~~Ll~~----g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-------~~~~~~~~~~g~t~L~~A  314 (541)
                      +|+..|+.+++++|++.    |++++.                       ++...       .+++..+ ..|.||||+|
T Consensus        90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A  145 (364)
T 3ljn_A           90 LAVMANKTDLVVALVEGAKERGQMPES-----------------------LLNECDEREVNEIGSHVKH-CKGQTALHWC  145 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCHHH-----------------------HHTCCCCCCEEEETTEEEE-ESCCCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhccccCCCHHH-----------------------HHhhcchHhhhhhccccCC-CCCCCHHHHH
Confidence            77777777777777776    555443                       00000       0011122 3466666666


Q ss_pred             HHcC--CHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCC-----C
Q 037006          315 ASLG--YEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAA-----I  387 (541)
Q Consensus       315 ~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~-----~  387 (541)
                      +..|  +.+++++|+++|++++..|..|.||||+|+..|+.+                     ++++|+++|++     +
T Consensus       146 ~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~---------------------~v~~Ll~~g~~~~~~~~  204 (364)
T 3ljn_A          146 VGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNRE---------------------ALDLMMDTVPSKSSLRL  204 (364)
T ss_dssp             HHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHH---------------------HHHHHHHHCSCSSSCCT
T ss_pred             HHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH---------------------HHHHHHhcccccccccc
Confidence            6666  666666666666666666666666666665554443                     35556666666     8


Q ss_pred             CCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcc------------
Q 037006          388 NGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEA------------  455 (541)
Q Consensus       388 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~------------  455 (541)
                      +..|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+..|+.+++++|+++|++++.            
T Consensus       205 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  284 (364)
T 3ljn_A          205 DYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVL  284 (364)
T ss_dssp             TCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCccccc
Confidence            88888999999999999999999999999999999999999999999999999999999999877533            


Q ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q 037006          456 RTSKNVSPMQIAECLHYAGISRILMHGGAT  485 (541)
Q Consensus       456 ~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~  485 (541)
                      .+..++||+++|+..++.+.+..|+..+++
T Consensus       285 ~~~~~~~~l~~aa~~~~~~~v~~ll~~~~~  314 (364)
T 3ljn_A          285 PDRVVWLDFVPAAADPSKQEVLQLLQEKLD  314 (364)
T ss_dssp             GGGCCCCTTSCSSCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhhhccCHHHHHHHHHHHHH
Confidence            566789999999999988888788776655

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=6.7e-44  Score=358.80  Aligned_cols=276  Identities=17%  Similarity=0.165  Sum_probs=206.9

Q ss_pred             ecCcHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHH
Q 037006          134 FVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEA  213 (541)
Q Consensus       134 ~~g~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~  213 (541)
                      ..|.|+|++|+..|+.++|++|++.+.    +++..|..|.||||+||..|+.++|++|+++|++++..   .|.||||+
T Consensus        18 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~   90 (364)
T 3ljn_A           18 DENMEKIHVAARKGQTDEVRRLIETGV----SPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW---HGQKPIHL   90 (364)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCB---TTBCHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCC----CccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc---CCCCHHHH
Confidence            457899999999999999999999864    36788999999999999999999999999999976653   38999999


Q ss_pred             HHHcCCHHHHHHHHHC----CCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhC--CHH
Q 037006          214 AAAAGEALIVELLLAR----KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDR--RRD  287 (541)
Q Consensus       214 A~~~g~~~iv~~Ll~~----g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g--~~~  287 (541)
                      |+..|+.+++++|++.    |++++....          .....      .....+++..|..|.||||+|+..|  +.+
T Consensus        91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~----------~~~~~------~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~  154 (364)
T 3ljn_A           91 AVMANKTDLVVALVEGAKERGQMPESLLN----------ECDER------EVNEIGSHVKHCKGQTALHWCVGLGPEYLE  154 (364)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCHHHHHT----------CCCCC------CEEEETTEEEEESCCCHHHHHHHSCGGGHH
T ss_pred             HHHcCCHHHHHHHHHhccccCCCHHHHHh----------hcchH------hhhhhccccCCCCCCCHHHHHHHcCCchHH
Confidence            9999999999999998    655443000          00000      0001223345556666666666666  666


Q ss_pred             HHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----ccccccCCCchhHHHHHcCCHHHHHHhhcC
Q 037006          288 CARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGAN-----KYIRNKSGKTAYDVAAECGHSRLFDALKLG  362 (541)
Q Consensus       288 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~  362 (541)
                      ++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++     ++..|..|.||||+|+..|+.+        
T Consensus       155 ~v~~Ll~~ga~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~--------  225 (364)
T 3ljn_A          155 MIKILVQLGASPTAKD-KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED--------  225 (364)
T ss_dssp             HHHHHHHHTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHH--------
T ss_pred             HHHHHHHcCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHH--------
Confidence            6666666666666655 5566777777777777777777776666     7777777777777776655543        


Q ss_pred             CchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCC------------CCCCCChH
Q 037006          363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA------------KDEDGYTA  430 (541)
Q Consensus       363 ~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~------------~d~~g~tp  430 (541)
                                   ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.            .+..++||
T Consensus       226 -------------~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (364)
T 3ljn_A          226 -------------VAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLD  292 (364)
T ss_dssp             -------------HHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCT
T ss_pred             -------------HHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCccccccccccccc
Confidence                         46667777888888888888888888888888888888888766432            45678899


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCc
Q 037006          431 LHCAVESGHTDVTELLVKKGADVE  454 (541)
Q Consensus       431 L~~A~~~g~~~~v~~Ll~~ga~~~  454 (541)
                      |++|+..|+.+.+..|++.+++..
T Consensus       293 l~~aa~~~~~~~v~~ll~~~~~~~  316 (364)
T 3ljn_A          293 FVPAAADPSKQEVLQLLQEKLDEV  316 (364)
T ss_dssp             TSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhccCHHHHHHHHHHHHHHH
Confidence            999999998888888888765543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.1e-42  Score=328.35  Aligned_cols=212  Identities=26%  Similarity=0.353  Sum_probs=174.6

Q ss_pred             cCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 037006          250 GGHLEVLKLLLIKGANVNA-LTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQ  328 (541)
Q Consensus       250 ~g~~~iv~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  328 (541)
                      .++.+++++|++.|++++. .|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++
T Consensus        33 ~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~  111 (253)
T 1yyh_A           33 EDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVSADAQGVFQILIR  111 (253)
T ss_dssp             -------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHH
Confidence            4488889999988888765 47888999999999999999999999999888777 778899999999999999999999


Q ss_pred             cCC-CccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCH
Q 037006          329 KGA-NKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKI  407 (541)
Q Consensus       329 ~g~-~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~  407 (541)
                      .|. +++..+..|.||||+|+..|+.++                     +++|+++|++++.+|..|+||||+|+..|+.
T Consensus       112 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~---------------------v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~  170 (253)
T 1yyh_A          112 NRATDLDARMHDGTTPLILAARLAVEGM---------------------LEDLINSHADVNAVDDLGKSALHWAAAVNNV  170 (253)
T ss_dssp             STTSCTTCCCTTCCCHHHHHHHHTCSSH---------------------HHHHHHTTCCTTCBCTTSCBHHHHHHHHTCH
T ss_pred             cCCCCccccCCCCCcHHHHHHHcChHHH---------------------HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            887 888888899999988887766544                     7778889999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCC
Q 037006          408 EVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG  483 (541)
Q Consensus       408 ~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~g  483 (541)
                      +++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||+++|+..|+.+++++|.+..
T Consensus       171 ~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          171 DAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998653

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.5e-41  Score=320.86  Aligned_cols=229  Identities=29%  Similarity=0.396  Sum_probs=187.1

Q ss_pred             CCCCCCCchHHHHHHhcCCHHHHHHHHH----cCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCc
Q 037006          234 ERSETSTWGPIHLALRGGHLEVLKLLLI----KGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDT  309 (541)
Q Consensus       234 ~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t  309 (541)
                      +..|..|+||||+|+..|+.+++++|++    .|.+++..|..|.||||+|+..|+.+++++|++.|++++..+ ..|.|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t   81 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD-RHGQT   81 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccC-CCCCC
Confidence            3456677777777777777777777776    577788888888888888888888888888888888877766 67788


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCC----CccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCC
Q 037006          310 PLHITASLGYEQMVKLLLQKGA----NKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGA  385 (541)
Q Consensus       310 ~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~  385 (541)
                      |||+|+..|+.+++++|++.++    +++..+..|.||||+|+..|+.                     +++++|+++|+
T Consensus        82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~---------------------~~~~~Ll~~g~  140 (241)
T 1k1a_A           82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ---------------------ETVQLLLERGA  140 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCH---------------------HHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCH---------------------HHHHHHHHcCC
Confidence            8888888888888888888776    7777888888888887766554                     44777888888


Q ss_pred             CCCCCC-CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHH
Q 037006          386 AINGKD-LHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPM  464 (541)
Q Consensus       386 ~~~~~d-~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l  464 (541)
                      +++..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+
T Consensus       141 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl  220 (241)
T 1k1a_A          141 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPL  220 (241)
T ss_dssp             CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTT
T ss_pred             CcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHH
Confidence            888888 7899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHHHhCCC
Q 037006          465 QIAECLHYAGISRILMHGGA  484 (541)
Q Consensus       465 ~~A~~~~~~~i~~~Ll~~ga  484 (541)
                      ++|+..|+.++++.|++.++
T Consensus       221 ~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          221 MVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             TTCSSHHHHHHHTC------
T ss_pred             HHHHhcCcHHHHhhhccCCC
Confidence            99999999999999998765

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.2e-40  Score=314.11  Aligned_cols=227  Identities=25%  Similarity=0.390  Sum_probs=186.0

Q ss_pred             CCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHH
Q 037006          232 STERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPL  311 (541)
Q Consensus       232 ~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L  311 (541)
                      +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.|||
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L   81 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKD-AEGSTCL   81 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCC-TTSCCHH
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCC-CCCCcHH
Confidence            456667777777777777777777777777777777777777788888888888888888888777777666 6677888


Q ss_pred             HHHHHcCCHHHHHHHHHcC-CCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCC
Q 037006          312 HITASLGYEQMVKLLLQKG-ANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGK  390 (541)
Q Consensus       312 ~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~  390 (541)
                      |+|+..|+.+++++|++.| .+++..+..|.||||+|+..|+.                     +++++|+++|++++.+
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~---------------------~~~~~Ll~~g~~~~~~  140 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV---------------------DLVKLLLSKGSDINIR  140 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCH---------------------HHHHHHHHTTCCTTCC
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCH---------------------HHHHHHHHCCCCCCcc
Confidence            8888888888888888877 67777788888888777766554                     4467778888888888


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHc
Q 037006          391 DLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECL  470 (541)
Q Consensus       391 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  470 (541)
                      +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..
T Consensus       141 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  220 (237)
T 3b7b_A          141 DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLN  220 (237)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTT
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHH
Q 037006          471 HYAGISRILM  480 (541)
Q Consensus       471 ~~~~i~~~Ll  480 (541)
                      ++.+.+..|+
T Consensus       221 ~~~~~~~~l~  230 (237)
T 3b7b_A          221 SQVWSALQMS  230 (237)
T ss_dssp             CHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8875554444

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4.6e-41  Score=320.28  Aligned_cols=243  Identities=25%  Similarity=0.263  Sum_probs=164.9

Q ss_pred             CCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCchHH
Q 037006          166 ADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTER-SETSTWGPI  244 (541)
Q Consensus       166 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~-~~~~~~t~L  244 (541)
                      ++.+|..|+||||+|+..|+.-          .           ....+...++.+++++|++.|++++. .+..|+|||
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~----------~-----------~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L   61 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGL----------E-----------TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL   61 (253)
T ss_dssp             ----------------------------------------------------------------------CCCTTSCCHH
T ss_pred             CCCCCCCCCcHHHHHHhccccc----------c-----------ccchhhcCCChHHHHHHHHccCCcccccCCCCCcHH
Confidence            5678899999999999988421          0           01125566777888888888777754 467788888


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCC-CCCccCCCCCCcHHHHHHHcCCHHHH
Q 037006          245 HLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGA-RPDIRNARDGDTPLHITASLGYEQMV  323 (541)
Q Consensus       245 ~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~t~L~~A~~~g~~~~v  323 (541)
                      |+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|++.|+ +++..+ ..|.||||+|+..|+.+++
T Consensus        62 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v  140 (253)
T 1yyh_A           62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM-HDGTTPLILAARLAVEGML  140 (253)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCC-TTCCCHHHHHHHHTCSSHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC-CCCCcHHHHHHHcChHHHH
Confidence            88888888888888888888888888888888888888888888888888876 666655 6788888888888888888


Q ss_pred             HHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHh
Q 037006          324 KLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASF  403 (541)
Q Consensus       324 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~  403 (541)
                      ++|++.|++++..|..|.||||+|+..|+.++                     +++|+++|++++.+|..|+||||+|+.
T Consensus       141 ~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~---------------------v~~Ll~~ga~~~~~~~~g~tpL~~A~~  199 (253)
T 1yyh_A          141 EDLINSHADVNAVDDLGKSALHWAAAVNNVDA---------------------AVVLLKNGANKDMQNNREETPLFLAAR  199 (253)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHH---------------------HHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH---------------------HHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            88888888888888888888888888776544                     677888888999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCC
Q 037006          404 KGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGA  451 (541)
Q Consensus       404 ~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga  451 (541)
                      .|+.+++++|+++|++++.+|..|+||||+|++.|+.+++++|.+...
T Consensus       200 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          200 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred             CCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999987643

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.4e-41  Score=326.27  Aligned_cols=263  Identities=24%  Similarity=0.226  Sum_probs=182.1

Q ss_pred             CCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCC---CcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCch
Q 037006          166 ADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPD---VESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWG  242 (541)
Q Consensus       166 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t  242 (541)
                      ++.+|..|.||||+||..|+.++|++|++.|++   ++..+.. |.||||+|+..|+.+++++|+++|++++..+..|+|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL-GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            456788999999999999999999999999988   5555555 888888888888888888888888888888888888


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCH-H
Q 037006          243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYE-Q  321 (541)
Q Consensus       243 ~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~-~  321 (541)
                      |||+|+..|+.+++++|+++|++........                  ++..+...   ....+.++++.++..+.. .
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  139 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDT------------------YLTQSQDC---TPDTSHAPAAVDSQPNPENE  139 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------------------------
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHH------------------Hhhccccc---Ccchhcchhhhccccccchh
Confidence            8888888888888888888877654322111                  01111111   113355666666655443 3


Q ss_pred             HHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCC-CCChHHHH
Q 037006          322 MVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDL-HGWTALHR  400 (541)
Q Consensus       322 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~-~g~t~L~~  400 (541)
                      ....+...+.+++..+..|.||||+|+..|+.+                     ++++|+++|++++..+. .|+||||+
T Consensus       140 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~---------------------~v~~Ll~~g~~~~~~~~~~g~tpL~~  198 (282)
T 1oy3_D          140 EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE---------------------MVRLLRDAGADLNKPEPTCGRTPLHL  198 (282)
T ss_dssp             ----CCCGGGGTTCCCTTSCCHHHHHHHTTCHH---------------------HHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred             hhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHH---------------------HHHHHHHcCCCCCCCCCCCCcCHHHH
Confidence            444455567778888888999988887766654                     47778888999988875 49999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcC
Q 037006          401 ASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH  471 (541)
Q Consensus       401 Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  471 (541)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+++|....
T Consensus       199 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999887654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.5e-40  Score=310.54  Aligned_cols=224  Identities=29%  Similarity=0.360  Sum_probs=170.2

Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcC
Q 037006          240 TWGPIHLALRGGHLEVLKLLLIKGA-NVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLG  318 (541)
Q Consensus       240 ~~t~L~~Aa~~g~~~iv~~Ll~~g~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g  318 (541)
                      +.+|||.|+..|+.+.+++|++.+. .++..|..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~   84 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAG   84 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHHT
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcC-CCCCCHHHHHHHcC
Confidence            4556666666666666666665542 345556666777777777777777777777776666655 55677777777777


Q ss_pred             CHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHH
Q 037006          319 YEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTAL  398 (541)
Q Consensus       319 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L  398 (541)
                      +.+++++|+++|++++..+..|.||||+|+..|+.+                     ++++|+++|++++..+..|.|||
T Consensus        85 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~---------------------~~~~Ll~~g~~~~~~~~~g~t~L  143 (231)
T 3aji_A           85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE---------------------IAVMLLEGGANPDAKDHYDATAM  143 (231)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH---------------------HHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             HHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH---------------------HHHHHHHcCCCCCCcCCCCCcHH
Confidence            777777777777777777777777777666555443                     36667777777787888888888


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHH
Q 037006          399 HRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRI  478 (541)
Q Consensus       399 ~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~  478 (541)
                      |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..++.+++++
T Consensus       144 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~l  223 (231)
T 3aji_A          144 HRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRL  223 (231)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHH
Confidence            88888888899999998888888888888999999999999999999999999988888889999999888888888888


Q ss_pred             HHhCCCC
Q 037006          479 LMHGGAT  485 (541)
Q Consensus       479 Ll~~ga~  485 (541)
                      |+++|++
T Consensus       224 L~~~~a~  230 (231)
T 3aji_A          224 AEGEEAS  230 (231)
T ss_dssp             HHHHHHC
T ss_pred             Hcccccc
Confidence            8887764

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.3e-40  Score=312.81  Aligned_cols=230  Identities=32%  Similarity=0.370  Sum_probs=158.6

Q ss_pred             CCCCCCCccHHHHHHHcCCHHHHHHHHh----cCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCch
Q 037006          167 DSADAQGQTLLHIAIAQRRPDIVQLLLE----FGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWG  242 (541)
Q Consensus       167 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t  242 (541)
                      +.+|.+|.||||+||..|+.++|++|++    .|.+++..+.. |.||||+|+..|+.+++++|+++|++++..+..|+|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   81 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT   81 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccccc-CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence            4567888888888888888888888886    67777766655 677777777777777777777777777777777777


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCC----CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcC
Q 037006          243 PIHLALRGGHLEVLKLLLIKGA----NVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLG  318 (541)
Q Consensus       243 ~L~~Aa~~g~~~iv~~Ll~~g~----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g  318 (541)
                      |||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|++.|++++..+...|.||||+|+..|
T Consensus        82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~  161 (241)
T 1k1a_A           82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN  161 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence            7777777777777777777765    566666666666666666666666666666666666555445666666666655


Q ss_pred             CHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHH
Q 037006          319 YEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTAL  398 (541)
Q Consensus       319 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L  398 (541)
                      +.+++++|+++|                                                      ++++.+|..|+|||
T Consensus       162 ~~~~v~~Ll~~g------------------------------------------------------~~~~~~~~~g~t~L  187 (241)
T 1k1a_A          162 SLSMVQLLLQHG------------------------------------------------------ANVNAQMYSGSSAL  187 (241)
T ss_dssp             CHHHHHHHHHTT------------------------------------------------------CCTTCBCTTSCBHH
T ss_pred             CHHHHHHHHHcC------------------------------------------------------CCCCCcCCCCCCHH
Confidence            555555555554                                                      45555666677777


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCC
Q 037006          399 HRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGA  451 (541)
Q Consensus       399 ~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga  451 (541)
                      |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++.|++.++
T Consensus       188 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          188 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            77777777777888888788877777778888888887778888877777654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-41  Score=325.15  Aligned_cols=228  Identities=28%  Similarity=0.359  Sum_probs=143.1

Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcCCC--------CCCCCCCCChHHHHHHHhCCH-HHHHHHHHCCCCCCccCCCCCCcH
Q 037006          240 TWGPIHLALRGGHLEVLKLLLIKGAN--------VNALTKDGNTALHLAVEDRRR-DCARLLLANGARPDIRNARDGDTP  310 (541)
Q Consensus       240 ~~t~L~~Aa~~g~~~iv~~Ll~~g~~--------~~~~d~~g~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~~g~t~  310 (541)
                      +.++|+.|+..|+.++|++|++.|++        ++..+..|.|||++|+..++. .++++|++.|++++..+ ..|.||
T Consensus        11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d-~~G~Tp   89 (269)
T 4b93_B           11 EVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTS-QDGSSP   89 (269)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCC-TTSCCH
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcC-CCCCCH
Confidence            34445555555555555555544432        344566677777777766654 36777777777777666 667777


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCC
Q 037006          311 LHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGK  390 (541)
Q Consensus       311 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~  390 (541)
                      ||+|+..|+.+++++|++.|++++..+..|.||+++|+..++.+                     ++++|+++|++++.+
T Consensus        90 Lh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~---------------------~~~~Ll~~g~~~n~~  148 (269)
T 4b93_B           90 LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQ---------------------VVKCLLDSNAKPNKK  148 (269)
T ss_dssp             HHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH---------------------HHHHHHHTTCCSCCC
T ss_pred             HHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHH---------------------HHHHHHHCCCCCCCC
Confidence            77777777777777777777777777777777777776655543                     466677788888888


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHc
Q 037006          391 DLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECL  470 (541)
Q Consensus       391 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  470 (541)
                      |..|+||||+|+..|+.++|++|+++|+|+|.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+.+
T Consensus       149 d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  228 (269)
T 4b93_B          149 DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQN  228 (269)
T ss_dssp             CTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTT
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhC
Confidence            88888888888888899999999999999998888899999999999999999999999999998888899999998877


Q ss_pred             Cc-HHHHHHHHhCCCCCCCC
Q 037006          471 HY-AGISRILMHGGATKDGI  489 (541)
Q Consensus       471 ~~-~~i~~~Ll~~ga~~~~~  489 (541)
                      ++ .+++++|...++..+..
T Consensus       229 ~~i~~lL~~l~~~~~~~~~~  248 (269)
T 4b93_B          229 SKIMELLQVVPSCVASLDDV  248 (269)
T ss_dssp             CHHHHHTTC-----------
T ss_pred             CcHHHHHHHHHHhchhhhhc
Confidence            65 45555556555554433

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=8.3e-40  Score=308.27  Aligned_cols=227  Identities=26%  Similarity=0.364  Sum_probs=142.8

Q ss_pred             CCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHH
Q 037006          166 ADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIH  245 (541)
Q Consensus       166 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~  245 (541)
                      ++..|..|.||||+||..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   82 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSED-QRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH   82 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCC-CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence            4456666667777777777777667666666666655544 556666666666666666666555555555555555555


Q ss_pred             HHHhcCCHHHHHHHHHcC-CCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHH
Q 037006          246 LALRGGHLEVLKLLLIKG-ANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVK  324 (541)
Q Consensus       246 ~Aa~~g~~~iv~~Ll~~g-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~  324 (541)
                      +|+..|+.+++++|++.| .+++..+..|.||||+|+..|+.+++++|++.                             
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-----------------------------  133 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-----------------------------  133 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------------------------
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC-----------------------------
Confidence            555555555555555554 45555555555555555555555555555554                             


Q ss_pred             HHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhc
Q 037006          325 LLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFK  404 (541)
Q Consensus       325 ~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~  404 (541)
                           |++++..+..|.||||+|+..|+.                     +++++|+++|++++..|..|.||||+|+..
T Consensus       134 -----g~~~~~~~~~g~t~L~~A~~~~~~---------------------~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  187 (237)
T 3b7b_A          134 -----GSDINIRDNEENICLHWAAFSGCV---------------------DIAEILLAAKCDLHAVNIHGDSPLHIAARE  187 (237)
T ss_dssp             -----TCCTTCCCTTSCCHHHHHHHHCCH---------------------HHHHHHHTTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             -----CCCCCccCCCCCCHHHHHHHCCCH---------------------HHHHHHHHcCCCCCCcCCCCCCHHHHHHHh
Confidence                 444444555555555554443333                     234555555666666777788888888888


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHH
Q 037006          405 GKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVK  448 (541)
Q Consensus       405 g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  448 (541)
                      |+.+++++|+++|++++.+|..|+||||+|+.+|+.+.+..|++
T Consensus       188 ~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             CCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888765555543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.9e-40  Score=321.03  Aligned_cols=261  Identities=26%  Similarity=0.289  Sum_probs=168.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHh
Q 037006          207 CSTPLEAAAAAGEALIVELLLARKAS---TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVED  283 (541)
Q Consensus       207 ~~t~L~~A~~~g~~~iv~~Ll~~g~~---~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~  283 (541)
                      |.||||+|+..|+.+++++|++.|++   ++..+..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..
T Consensus         9 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~   88 (282)
T 1oy3_D            9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV   88 (282)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            66666666666666666666666665   555566666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCC
Q 037006          284 RRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGD  363 (541)
Q Consensus       284 g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~  363 (541)
                      |+.+++++|+++|++......   .+.+                ..+  .......+.++++.++..+..          
T Consensus        89 ~~~~~v~~Ll~~~~~~~~~~~---~~~~----------------~~~--~~~~~~~~~~~~~~~~~~~~~----------  137 (282)
T 1oy3_D           89 RAHTCACVLLQPRPSHPRDAS---DTYL----------------TQS--QDCTPDTSHAPAAVDSQPNPE----------  137 (282)
T ss_dssp             TCHHHHHHHSSSCCSSCCCC------------------------------------------------------------
T ss_pred             CCcchhHhhhccCCCCchhhH---HHHh----------------hcc--cccCcchhcchhhhccccccc----------
Confidence            666666666666655432210   0000                000  011122334444444333222          


Q ss_pred             chHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CChHHHHHHHcCCHHH
Q 037006          364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDED-GYTALHCAVESGHTDV  442 (541)
Q Consensus       364 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~-g~tpL~~A~~~g~~~~  442 (541)
                                ......+...+.+++..+..|+||||+|+..|+.+++++|+++|++++..+.. |+||||+|+..|+.++
T Consensus       138 ----------~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~  207 (282)
T 1oy3_D          138 ----------NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV  207 (282)
T ss_dssp             ----------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ----------hhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHH
Confidence                      22344455667889999999999999999999999999999999999999865 9999999999999999


Q ss_pred             HHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCCcccccchhhhhhcCCCccc
Q 037006          443 TELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNGKVGR  508 (541)
Q Consensus       443 v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~  508 (541)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..+.+++..+......+.
T Consensus       208 v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~~~  273 (282)
T 1oy3_D          208 LELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDN  273 (282)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC------------------
T ss_pred             HHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcccccc
Confidence            999999999999999999999999999999999999999999999999999999988776655443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.3e-40  Score=322.43  Aligned_cols=245  Identities=27%  Similarity=0.345  Sum_probs=185.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCH
Q 037006          207 CSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR  286 (541)
Q Consensus       207 ~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~  286 (541)
                      +.|||+.|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.
T Consensus        40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~  119 (299)
T 1s70_B           40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL  119 (299)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Confidence            45677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCch
Q 037006          287 DCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQ-KGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSL  365 (541)
Q Consensus       287 ~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l  365 (541)
                      +++++|+++|++++..+ ..|.||||+|+..++.++++.++. .|.+++..+..+.+++.                    
T Consensus       120 ~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------------------  178 (299)
T 1s70_B          120 DIAEYLISQGAHVGAVN-SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--------------------  178 (299)
T ss_dssp             HHHHHHHHTTCCTTCCC-TTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------------------
T ss_pred             HHHHHHHhCCCCCCCcC-CCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--------------------
Confidence            77777777777777666 667788888777777777777665 35554433322222211                    


Q ss_pred             HHHHhhCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHH
Q 037006          366 CVAARKGEVRTMQRLIEA-GAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTE  444 (541)
Q Consensus       366 ~~a~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~  444 (541)
                               ..+..++.. .......+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus       179 ---------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~  249 (299)
T 1s70_B          179 ---------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACR  249 (299)
T ss_dssp             ---------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             ---------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHH
Confidence                     113334444 4444556788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHh
Q 037006          445 LLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMH  481 (541)
Q Consensus       445 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~  481 (541)
                      +|+++|++++.+|..|.|||++|.......+.+++-+
T Consensus       250 ~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~~l~~~  286 (299)
T 1s70_B          250 ILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKK  286 (299)
T ss_dssp             HHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHHHHHHH
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999976544444444433

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6.8e-40  Score=307.61  Aligned_cols=223  Identities=26%  Similarity=0.326  Sum_probs=148.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHH
Q 037006          209 TPLEAAAAAGEALIVELLLARKAS-TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRD  287 (541)
Q Consensus       209 t~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~  287 (541)
                      +||+.|+..|+.+++++|++.+.. .+..+..|+||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+
T Consensus         8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   87 (231)
T 3aji_A            8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDE   87 (231)
T ss_dssp             SHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred             chHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHH
Confidence            444444444444444444433322 3334445555555555555555555555555555555555566666666666666


Q ss_pred             HHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHH
Q 037006          288 CARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCV  367 (541)
Q Consensus       288 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~  367 (541)
                      ++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.              
T Consensus        88 ~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------------  152 (231)
T 3aji_A           88 IVKALLVKGAHVNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL--------------  152 (231)
T ss_dssp             HHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH--------------
T ss_pred             HHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH--------------
Confidence            6666666666555554 4566666666666666666666666666666666666666666554443              


Q ss_pred             HHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHH
Q 037006          368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLV  447 (541)
Q Consensus       368 a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  447 (541)
                             +++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+
T Consensus       153 -------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~  225 (231)
T 3aji_A          153 -------KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAE  225 (231)
T ss_dssp             -------HHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHH
T ss_pred             -------HHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHc
Confidence                   3356666777777778888889999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCCC
Q 037006          448 KKGADV  453 (541)
Q Consensus       448 ~~ga~~  453 (541)
                      ++|+++
T Consensus       226 ~~~a~i  231 (231)
T 3aji_A          226 GEEASM  231 (231)
T ss_dssp             HHHHCC
T ss_pred             cccccC
Confidence            888764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.1e-41  Score=321.53  Aligned_cols=239  Identities=28%  Similarity=0.384  Sum_probs=169.8

Q ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHH
Q 037006          168 SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLA  247 (541)
Q Consensus       168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A  247 (541)
                      .+|..+.++|+.||..|+.++|++|++.|++......                          ..++..+..+.|||++|
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~--------------------------~~~~~~~~~~~t~L~~a   59 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAE--------------------------DTVSAADPEFCHPLCQC   59 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccccc--------------------------ccccccCccCCCHHHHH
Confidence            4567778899999999999999999988875432111                          11344566778888888


Q ss_pred             HhcCCH-HHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q 037006          248 LRGGHL-EVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLL  326 (541)
Q Consensus       248 a~~g~~-~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  326 (541)
                      +..++. .++++|++.|+++|..|.+|+||||+|+..|+.+++++|++.|++++..+ ..|.||+++|+..++.+++++|
T Consensus        60 ~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~-~~g~t~l~~a~~~~~~~~~~~L  138 (269)
T 4b93_B           60 PKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARN-ADQAVPLHLACQQGHFQVVKCL  138 (269)
T ss_dssp             ---------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccC-CCCCCccccccccChHHHHHHH
Confidence            887765 47888888899999999999999999999999999999999999988777 7789999999999999999999


Q ss_pred             HHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCC
Q 037006          327 LQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGK  406 (541)
Q Consensus       327 l~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~  406 (541)
                      ++.|++++..|..|+||||+|+..|+.++                     +++|+++|+++|.++..|+||||+|+..|+
T Consensus       139 l~~g~~~n~~d~~g~TpL~~A~~~g~~~~---------------------v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~  197 (269)
T 4b93_B          139 LDSNAKPNKKDLSGNTPLIYACSGGHHEL---------------------VALLLQHGASINASNNKGNTALHEAVIEKH  197 (269)
T ss_dssp             HHTTCCSCCCCTTCCCHHHHHHHTTCGGG---------------------HHHHHHTTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHCCCHHH---------------------HHHHHHCCCCCCccccCCCcHHHHHHHcCC
Confidence            99999999999999999998888777654                     777889999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCC-HHHHHHHHHCCCCCc
Q 037006          407 IEVVRMLIDKGIDVDAKDEDGYTALHCAVESGH-TDVTELLVKKGADVE  454 (541)
Q Consensus       407 ~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~-~~~v~~Ll~~ga~~~  454 (541)
                      .++|++|+++|+|++.+|..|+||||+|+++++ .+++++|...++.++
T Consensus       198 ~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~~  246 (269)
T 4b93_B          198 VFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD  246 (269)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC---------
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhhh
Confidence            999999999999999999999999999998875 355555556555543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.3e-39  Score=305.44  Aligned_cols=232  Identities=28%  Similarity=0.350  Sum_probs=177.2

Q ss_pred             CCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHH
Q 037006          234 ERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHI  313 (541)
Q Consensus       234 ~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~  313 (541)
                      +..+..+.++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++......|.||||+
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~   82 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW   82 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence            44556677777777777777777777777777777777777777777777777777777777777776665557778888


Q ss_pred             HHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCC
Q 037006          314 TASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLH  393 (541)
Q Consensus       314 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~  393 (541)
                      |+..|+.+++++|++.|++++..+..|.||||+|+..|+.+                     ++++|+++|++++..+..
T Consensus        83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~---------------------~~~~Ll~~~~~~~~~~~~  141 (240)
T 3eu9_A           83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS---------------------IVAYLIAKGQDVDMMDQN  141 (240)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH---------------------HHHHHHHTTCCTTCCCTT
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHH---------------------HHHHHHhcCCCccccCCC
Confidence            88777788888888777777777777777777776655543                     466677777888877888


Q ss_pred             CChHHHHHHhcCC-HHHHHHHHHcCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcC
Q 037006          394 GWTALHRASFKGK-IEVVRMLIDKGIDVDAKDE-DGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH  471 (541)
Q Consensus       394 g~t~L~~Aa~~g~-~~~v~~Ll~~g~d~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  471 (541)
                      |.||||+|+..++ .+++++|++.|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|
T Consensus       142 g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  221 (240)
T 3eu9_A          142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK  221 (240)
T ss_dssp             SCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             CCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            8888888886655 7788888888888887776 7888888888888888888888888888888888888888888888


Q ss_pred             cHHHHHHHHhCCCCC
Q 037006          472 YAGISRILMHGGATK  486 (541)
Q Consensus       472 ~~~i~~~Ll~~ga~~  486 (541)
                      +.+++++|+++|+..
T Consensus       222 ~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          222 NVWMINHLQEARQAK  236 (240)
T ss_dssp             CHHHHHHHHHHC---
T ss_pred             cHHHHHHHHHhhhcc
Confidence            888888888877654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=3.5e-40  Score=319.64  Aligned_cols=237  Identities=16%  Similarity=0.198  Sum_probs=174.8

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCC
Q 037006          220 ALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARP  299 (541)
Q Consensus       220 ~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  299 (541)
                      .++.++|.+.  +++..+..|+||||+|+..|+.+++++|++.|++++..+  |+||||+|+..|+.+++++|+++|+++
T Consensus        13 ~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~   88 (285)
T 3kea_A           13 KQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDD   88 (285)
T ss_dssp             HHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCT
T ss_pred             HHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            3444444443  356666777777777777777777777777777776663  677777777777777777777777777


Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCC-CchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHH
Q 037006          300 DIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSG-KTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQ  378 (541)
Q Consensus       300 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~  378 (541)
                      +..+ ..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+                     +++
T Consensus        89 ~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~---------------------~v~  146 (285)
T 3kea_A           89 SQFD-DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS---------------------IVS  146 (285)
T ss_dssp             TCCC-TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH---------------------HHH
T ss_pred             CCcC-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH---------------------HHH
Confidence            7665 567777777777777777777777777777777777 67777776655543                     366


Q ss_pred             HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChH-HHHHHHcCCHHHHHHHHHCCCCCcccC
Q 037006          379 RLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTA-LHCAVESGHTDVTELLVKKGADVEART  457 (541)
Q Consensus       379 ~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tp-L~~A~~~g~~~~v~~Ll~~ga~~~~~~  457 (541)
                      +|+++|+++... ..|+||||+|+..|+.+++++|+++|++++.+|..|+|| ||+|+..|+.+++++|+++|++++.+|
T Consensus       147 ~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~  225 (285)
T 3kea_A          147 YFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN  225 (285)
T ss_dssp             HHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT
T ss_pred             HHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            667776665322 278888888888888888888888888888888888887 888888888888888888888888877


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCCc
Q 037006          458 SKNVSPMQIAECLHYAGISRILMHGGATKDGIQ  490 (541)
Q Consensus       458 ~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~~~~  490 (541)
                      .       .|+..|+.+++++|+++|++.+...
T Consensus       226 ~-------~a~~~~~~~iv~~Ll~~g~~~~~~~  251 (285)
T 3kea_A          226 L-------ENVLLDDAEIAKMIIEKHVEYKSDS  251 (285)
T ss_dssp             G-------GGGTTTCHHHHHHHHHHHHHHTTCT
T ss_pred             h-------hhhhcCCHHHHHHHHHcCCCCCCcc
Confidence            3       4566788888888888888765433

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=6.6e-39  Score=299.13  Aligned_cols=214  Identities=26%  Similarity=0.349  Sum_probs=139.5

Q ss_pred             CCHHHHHHHHHcCCCCCCC-CCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 037006          251 GHLEVLKLLLIKGANVNAL-TKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQK  329 (541)
Q Consensus       251 g~~~iv~~Ll~~g~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  329 (541)
                      |+.+++++|++.|++++.. |..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            3444455555555554443 4555555555555555555555555555555444 4455555555555555555555555


Q ss_pred             CC-CccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHH
Q 037006          330 GA-NKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIE  408 (541)
Q Consensus       330 g~-~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~  408 (541)
                      +. +++..+..|.||||+|+..|+.                     +++++|+++|++++..|..|+||||+|+..|+.+
T Consensus        81 ~~~~~~~~~~~g~t~L~~A~~~~~~---------------------~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  139 (223)
T 2f8y_A           81 RATDLDARMHDGTTPLILAARLAVE---------------------GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD  139 (223)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHHHTCH---------------------HHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred             CCCCcccCCCCCCcHHHHHHHhCcH---------------------HHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHH
Confidence            54 4555555566665555544433                     3355566666666667777777788888788888


Q ss_pred             HHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCC
Q 037006          409 VVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATK  486 (541)
Q Consensus       409 ~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~  486 (541)
                      ++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..++.+++++|+++|+..
T Consensus       140 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          140 AAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             HHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            888888888888888778888888888888888888888888888877778888888888888888888888877754

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3e-38  Score=297.75  Aligned_cols=233  Identities=24%  Similarity=0.271  Sum_probs=149.8

Q ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHH
Q 037006          168 SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLA  247 (541)
Q Consensus       168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A  247 (541)
                      ..|..|.|+|++|+..|+.+++++|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++....         
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~---------   73 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKE-NVTLLHWAAINNRIDLVKYYISKGAIVDQLGG---------   73 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBT---------
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCC-CCCHHHHHHHhCCHHHHHHHHHcCCcchhhcC---------
Confidence            34555666666666666666666666666665555443 55555555555555555555555554443322         


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 037006          248 LRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLL  327 (541)
Q Consensus       248 a~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  327 (541)
                                             ..|.|||++|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|+
T Consensus        74 -----------------------~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~~~~~~Ll  129 (240)
T 3eu9_A           74 -----------------------DLNSTPLHWATRQGHLSMVVQLMKYGADPSLID-GEGCSCIHLAAQFGHTSIVAYLI  129 (240)
T ss_dssp             -----------------------TTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             -----------------------CcCCChhHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHcCHHHHHHHHH
Confidence                                   224455555555555555555555555554443 44555555555555555555555


Q ss_pred             HcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCC-CCChHHHHHHhcCC
Q 037006          328 QKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDL-HGWTALHRASFKGK  406 (541)
Q Consensus       328 ~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~-~g~t~L~~Aa~~g~  406 (541)
                      ++|++++..+..|.||+|+|+..++.                    .+++++|++.|++++..+. .|.||||+|+..|+
T Consensus       130 ~~~~~~~~~~~~g~t~l~~a~~~~~~--------------------~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~  189 (240)
T 3eu9_A          130 AKGQDVDMMDQNGMTPLMWAAYRTHS--------------------VDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN  189 (240)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHHCCS--------------------STTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTC
T ss_pred             hcCCCccccCCCCCcHHHHHHHhCCh--------------------HHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCC
Confidence            55555555556666666666543331                    2336667777777887775 88999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCc
Q 037006          407 IEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVE  454 (541)
Q Consensus       407 ~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~  454 (541)
                      .+++++|+++|++++.+|..|.||||+|++.|+.+++++|+++|++..
T Consensus       190 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          190 TTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             HHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence            999999999999999999999999999999999999999999887654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.3e-39  Score=315.74  Aligned_cols=241  Identities=20%  Similarity=0.188  Sum_probs=182.1

Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHH
Q 037006          145 KDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVE  224 (541)
Q Consensus       145 ~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~  224 (541)
                      +..+.+.+..+|....     ++..|..|.||||+|+..|+.++|++|+++|++++..+   |.||||+|+..|+.++++
T Consensus         8 ~~~~~~~v~~lL~~~~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~---g~t~L~~A~~~g~~~~v~   79 (285)
T 3kea_A            8 NTWKSKQLKSFLSSKD-----TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE---NEFPLHQAATLEDTKIVK   79 (285)
T ss_dssp             GGCCHHHHHHHHHSTT-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT---TCCHHHHHTTSSSCHHHH
T ss_pred             HhcCHHHHHHHHHhCC-----CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC---CCCHHHHHHHcCCHHHHH
Confidence            4456667777776553     57788899999999999999999999999999888773   788999999988889999


Q ss_pred             HHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC-ChHHHHHHHhCCHHHHHHHHHCCCCCCccC
Q 037006          225 LLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDG-NTALHLAVEDRRRDCARLLLANGARPDIRN  303 (541)
Q Consensus       225 ~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  303 (541)
                      +|+++|++++..+..|+||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|+++|++.... 
T Consensus        80 ~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-  158 (285)
T 3kea_A           80 ILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-  158 (285)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-
T ss_pred             HHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-
Confidence            9888888888888888888888888888888888888888888888888 68888888888888888888888776322 


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHc
Q 037006          304 ARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEA  383 (541)
Q Consensus       304 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~  383 (541)
                       ..|.||||+|+..|+.+++++|+++|++++..                                               
T Consensus       159 -~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-----------------------------------------------  190 (285)
T 3kea_A          159 -AILLSCIHITIKNGHVDMMILLLDYMTSTNTN-----------------------------------------------  190 (285)
T ss_dssp             -STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-----------------------------------------------
T ss_pred             -cCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-----------------------------------------------
Confidence             25778888888777777777777766665544                                               


Q ss_pred             CCCCCCCCCCCChH-HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccc
Q 037006          384 GAAINGKDLHGWTA-LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR  456 (541)
Q Consensus       384 g~~~~~~d~~g~t~-L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~  456 (541)
                             |..|+|| ||+|+..|+.+++++|+++|++++..|.       .|+..|+.+++++|+++|++++..
T Consensus       191 -------~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~~~  250 (285)
T 3kea_A          191 -------NSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEYKSD  250 (285)
T ss_dssp             -------CCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHTTC
T ss_pred             -------cCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCCCc
Confidence                   4455554 5666666666666666666666665552       345566666666666666665543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=9.1e-39  Score=299.20  Aligned_cols=219  Identities=26%  Similarity=0.347  Sum_probs=170.3

Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHHhCCHHHHHHHHHCC--CCCCccCCCCCCcHHHHHHH
Q 037006          240 TWGPIHLALRGGHLEVLKLLLIKGANVNA-LTKDGNTALHLAVEDRRRDCARLLLANG--ARPDIRNARDGDTPLHITAS  316 (541)
Q Consensus       240 ~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~A~~  316 (541)
                      |.||||+|+..|+.+++++|++.+.++.. .|..|.||||+|+..|+.+++++|++.|  .+++...+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            45667777777777777777766655443 6677777777777777777777777777  33333223567777777777


Q ss_pred             cCCHHHHHHHHHcC--CCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCC
Q 037006          317 LGYEQMVKLLLQKG--ANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHG  394 (541)
Q Consensus       317 ~g~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g  394 (541)
                      .|+.+++++|+++|  ++++..+..|.||||+|+..|+.                     +++++|+++|++++.+|..|
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~---------------------~~~~~Ll~~g~~~~~~~~~g  140 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF---------------------EVSQFLIENGASVRIKDKFN  140 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCH---------------------HHHHHHHHTTCCSCCCCTTS
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCH---------------------hHHHHHHHcCCCccccCCCC
Confidence            77777777777777  67777777888887777665554                     44677788888888888899


Q ss_pred             ChHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHH-HCCCCCcccCCCCCCHHHHHHHcCc
Q 037006          395 WTALHRASFKGKIEVVRMLIDKG-IDVDAKDEDGYTALHCAVESGHTDVTELLV-KKGADVEARTSKNVSPMQIAECLHY  472 (541)
Q Consensus       395 ~t~L~~Aa~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~t~l~~A~~~~~  472 (541)
                      +||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..|+.+++++|+ ++|++++.+|..|+||+++|..   
T Consensus       141 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~---  217 (228)
T 2dzn_A          141 QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---  217 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS---
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH---
Confidence            99999999999999999999998 999999999999999999999999999999 8899999999999999999964   


Q ss_pred             HHHHHHHHhC
Q 037006          473 AGISRILMHG  482 (541)
Q Consensus       473 ~~i~~~Ll~~  482 (541)
                      .+++++|+++
T Consensus       218 ~~~~~~l~~~  227 (228)
T 2dzn_A          218 EQVKKFFLNN  227 (228)
T ss_dssp             TTHHHHHHTT
T ss_pred             HHHHHHHHhc
Confidence            3667777653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.8e-38  Score=296.15  Aligned_cols=215  Identities=26%  Similarity=0.282  Sum_probs=162.9

Q ss_pred             CCHHHHHHHHHCCCCCCCC-CCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCC
Q 037006          218 GEALIVELLLARKASTERS-ETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANG  296 (541)
Q Consensus       218 g~~~iv~~Ll~~g~~~~~~-~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g  296 (541)
                      |+.+++++|+++|++++.. +..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.+
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4555666666666665543 566667777777777777777777777777777777777777777777777777777766


Q ss_pred             C-CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHH
Q 037006          297 A-RPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVR  375 (541)
Q Consensus       297 ~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~  375 (541)
                      . +++..+ ..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+                     
T Consensus        82 ~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~---------------------  139 (223)
T 2f8y_A           82 ATDLDARM-HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD---------------------  139 (223)
T ss_dssp             TSCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH---------------------
T ss_pred             CCCcccCC-CCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHH---------------------
Confidence            5 555444 56777777777777777777777777777777777777777776655543                     


Q ss_pred             HHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCc
Q 037006          376 TMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVE  454 (541)
Q Consensus       376 ~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~  454 (541)
                      ++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|++.|+.+++++|+++|+...
T Consensus       140 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          140 AAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             HHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            4666777888888888899999999999999999999999999999999999999999999999999999999998654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-38  Score=311.53  Aligned_cols=276  Identities=26%  Similarity=0.343  Sum_probs=228.4

Q ss_pred             HHHHcCCHHHHHHHHhcCCCCC-----CCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHH
Q 037006          142 LLVKDGEMDDLREVLERSDPAW-----NPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAA  216 (541)
Q Consensus       142 ~a~~~g~~~~v~~ll~~~~~~~-----~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~  216 (541)
                      .+++.+..+.++.++.......     ......+..|.||||+||..|+.++|++|++.|++++..+.. |.||||+|+.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~   82 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVD-GLTALHQACI   82 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTT-CCBHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCC-CCCHHHHHHH
Confidence            4677788888888887543211     112233456789999999999999999999999999998877 9999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHC-
Q 037006          217 AGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLAN-  295 (541)
Q Consensus       217 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-  295 (541)
                      .|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++++.. 
T Consensus        83 ~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~  162 (299)
T 1s70_B           83 DDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ  162 (299)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999988864 


Q ss_pred             CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCH
Q 037006          296 GARPDIRNARDGDTPLHITASLGYEQMVKLLLQKG-ANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEV  374 (541)
Q Consensus       296 g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~  374 (541)
                      +.+++... ..+.++++        ..+..++..+ ......+..|.||||+|+..|+.+                    
T Consensus       163 ~~~~~~~~-~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~--------------------  213 (299)
T 1s70_B          163 GVDIEAAR-KEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE--------------------  213 (299)
T ss_dssp             TCCHHHHH-HHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHH--------------------
T ss_pred             CCCchhhh-hhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHH--------------------
Confidence            55544322 11222222        2344445444 445567788999999998776654                    


Q ss_pred             HHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHC
Q 037006          375 RTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKK  449 (541)
Q Consensus       375 ~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  449 (541)
                       ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|++.. .+.++.|++.
T Consensus       214 -~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~-~~~l~~l~~~  286 (299)
T 1s70_B          214 -VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI-LGYLEELQKK  286 (299)
T ss_dssp             -HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGG-GHHHHHHHHH
T ss_pred             -HHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHH-HHHHHHHHHH
Confidence             578899999999999999999999999999999999999999999999999999999997654 4555555554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4.6e-38  Score=294.41  Aligned_cols=221  Identities=23%  Similarity=0.310  Sum_probs=133.1

Q ss_pred             CccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCC
Q 037006          173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGH  252 (541)
Q Consensus       173 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~  252 (541)
                      |.||||+||..|+.++|++|++.|+++.......|.||||+|+..|+.+++++|+++|++                    
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~--------------------   61 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN--------------------   61 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTT--------------------
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccc--------------------
Confidence            455666666666666666666555544332222244555555555555555555554422                    


Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCChHHHHHHHhCCHHHHHHHHHCC--CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 037006          253 LEVLKLLLIKGANVNA-LTKDGNTALHLAVEDRRRDCARLLLANG--ARPDIRNARDGDTPLHITASLGYEQMVKLLLQK  329 (541)
Q Consensus       253 ~~iv~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  329 (541)
                                 .+++. .+..|.||||+|+..|+.+++++|+++|  ++++..+ ..|.||||+|+..|+.+++++|+++
T Consensus        62 -----------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~  129 (228)
T 2dzn_A           62 -----------VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT-NQGVTCLHLAVGKKWFEVSQFLIEN  129 (228)
T ss_dssp             -----------CCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             -----------ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCC-cCCCCHHHHHHHcCCHhHHHHHHHc
Confidence                       33333 4445555555555555555555555555  4444443 4455555555555556666666666


Q ss_pred             CCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcC-CCCCCCCCCCChHHHHHHhcCCHH
Q 037006          330 GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG-AAINGKDLHGWTALHRASFKGKIE  408 (541)
Q Consensus       330 g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~d~~g~t~L~~Aa~~g~~~  408 (541)
                      |++++..+..|.||||+|+..|+.+                     ++++|+++| ++++.+|..|+||||+|+..|+.+
T Consensus       130 g~~~~~~~~~g~t~L~~A~~~~~~~---------------------~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~  188 (228)
T 2dzn_A          130 GASVRIKDKFNQIPLHRAASVGSLK---------------------LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD  188 (228)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHTTCHH---------------------HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHH---------------------HHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHH
Confidence            6665556666666666555544433                     355556666 677777888888888888888888


Q ss_pred             HHHHHH-HcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHC
Q 037006          409 VVRMLI-DKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKK  449 (541)
Q Consensus       409 ~v~~Ll-~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  449 (541)
                      ++++|+ +.|++++.+|..|+||||+|+..   +++++|+++
T Consensus       189 ~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          189 AAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             HHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             HHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence            888888 77888888888888888888654   566666653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-40  Score=328.31  Aligned_cols=273  Identities=16%  Similarity=0.107  Sum_probs=200.2

Q ss_pred             cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-----------------CCCCchHHH
Q 037006          183 QRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERS-----------------ETSTWGPIH  245 (541)
Q Consensus       183 ~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~-----------------~~~~~t~L~  245 (541)
                      ....++|++|++.|++++..+.. |.++++     |+.+++++|+++|++++..                 .....+.+|
T Consensus        29 ~~~~dlv~~ll~~ga~i~~~~~~-g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  102 (327)
T 1sw6_A           29 TFTHDLTSDFLSSPLKIMKALPS-PVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQH  102 (327)
T ss_dssp             ECCTTCCCSTTTSSCCCEECBCC-CCCCCH-----HHHHHHHHHHHHHHC------------------------------
T ss_pred             hhcCchHHHHhhCCcccccCCCC-CCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhH
Confidence            45567888888888888887766 777766     8888999998888775541                 111122357


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCC---HH
Q 037006          246 LALRGGHLEVLKLLLIKGANVNA-LTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGY---EQ  321 (541)
Q Consensus       246 ~Aa~~g~~~iv~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~---~~  321 (541)
                      .|+..+..+++++|++.|++++. .|..|+||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+   .+
T Consensus       103 ~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d-~~g~TpLh~A~~~g~~~~~~  181 (327)
T 1sw6_A          103 VSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD-NMGESCLVKAVKSVNNYDSG  181 (327)
T ss_dssp             -CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCC-TTCCCHHHHHHHSSHHHHTT
T ss_pred             HHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHhcccccHH
Confidence            78888888999999999999999 89999999999999999999999999999999877 789999999999988   67


Q ss_pred             HHHHHHHcC-CCccccccCCCchhHHHHH----cCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCh
Q 037006          322 MVKLLLQKG-ANKYIRNKSGKTAYDVAAE----CGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWT  396 (541)
Q Consensus       322 ~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~----~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t  396 (541)
                      +++.|++.+ ++++..|..|+||||+|+.    .|+.++++.+......... ..+...+...+.+.|++++.++..|+|
T Consensus       182 ~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~-~~~~~~i~~~~~~~g~~~~~~~~~g~t  260 (327)
T 1sw6_A          182 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV-KKQNRPIQSGTNEKESKPNDKNGERKD  260 (327)
T ss_dssp             CHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-HGGGCCEEEC----------------C
T ss_pred             HHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHh-cccchHHHhhhhcccCCcccccccCCC
Confidence            888888876 6789999999999999998    6777766655211000000 000000001112338999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcC
Q 037006          397 ALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH  471 (541)
Q Consensus       397 ~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  471 (541)
                      |||.|+.      +++|+++  ++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|
T Consensus       261 ~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          261 SILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             hhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            9999996      9999998  68999999999999999999999999999999999999999999999998654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=6.6e-39  Score=316.99  Aligned_cols=249  Identities=17%  Similarity=0.094  Sum_probs=190.1

Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCC----------------CCCCcHHHHH
Q 037006          151 DLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGR----------------CGCSTPLEAA  214 (541)
Q Consensus       151 ~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------------~~~~t~L~~A  214 (541)
                      ++++|++++.    +++..|..|.|+++     |+.++|++|+++|++++....                ....+.+|+|
T Consensus        34 lv~~ll~~ga----~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a  104 (327)
T 1sw6_A           34 LTSDFLSSPL----KIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVS  104 (327)
T ss_dssp             CCCSTTTSSC----CCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------C
T ss_pred             hHHHHhhCCc----ccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHH
Confidence            3444544442    24556667777766     777777777777766543100                0012345778


Q ss_pred             HHcCCHHHHHHHHHCCCCCCC-CCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCC---HHHHH
Q 037006          215 AAAGEALIVELLLARKASTER-SETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRR---RDCAR  290 (541)
Q Consensus       215 ~~~g~~~iv~~Ll~~g~~~~~-~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~---~~~v~  290 (541)
                      +..+..+++++|++.|++++. .+..|+||||+|+..|+.+++++|+++|++++..|.+|+||||+|+..|+   .++++
T Consensus       105 ~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~  184 (327)
T 1sw6_A          105 FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFE  184 (327)
T ss_dssp             HHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHH
T ss_pred             HHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHH
Confidence            888888999999999999999 89999999999999999999999999999999999999999999999988   67888


Q ss_pred             HHHHCC-CCCCccCCCCCCcHHHHHHH----cCCHHHHHHHHHc--------------------CCCccccccCCCchhH
Q 037006          291 LLLANG-ARPDIRNARDGDTPLHITAS----LGYEQMVKLLLQK--------------------GANKYIRNKSGKTAYD  345 (541)
Q Consensus       291 ~Ll~~g-~~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~--------------------g~~~~~~~~~g~t~l~  345 (541)
                      .|++.+ ++++..+ ..|.||||+|+.    .|+.+++++|++.                    |++++..+..|.||||
T Consensus       185 ~ll~~~~~~~~~~d-~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~  263 (327)
T 1sw6_A          185 ALLDYLYPCLILED-SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSIL  263 (327)
T ss_dssp             HHHHHHGGGGGEEC-TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHH
T ss_pred             HHHHhhhccccCCC-CCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhH
Confidence            888876 6677776 789999999998    8999999999987                    8999999999999999


Q ss_pred             HHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Q 037006          346 VAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE  425 (541)
Q Consensus       346 ~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~  425 (541)
                      .|+.                           +++|+++  +++.+|..|+||||+|+..|+.++|++|+++|+|++.+|.
T Consensus       264 ~a~~---------------------------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~  314 (327)
T 1sw6_A          264 ENLD---------------------------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK  314 (327)
T ss_dssp             HHCS---------------------------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHH---------------------------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence            8863                           6778887  6888999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHcC
Q 037006          426 DGYTALHCAVESG  438 (541)
Q Consensus       426 ~g~tpL~~A~~~g  438 (541)
                      .|+||||+|+++|
T Consensus       315 ~G~TpL~~A~~~g  327 (327)
T 1sw6_A          315 SGLRPVDFGAGLE  327 (327)
T ss_dssp             TSCCGGGGTCC--
T ss_pred             CCCCHHHHHHhcC
Confidence            9999999998765

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=4.3e-37  Score=289.55  Aligned_cols=201  Identities=29%  Similarity=0.379  Sum_probs=130.2

Q ss_pred             CCCCCchHHHHHHhcCCHHHHHHHHHcCC----CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHH
Q 037006          236 SETSTWGPIHLALRGGHLEVLKLLLIKGA----NVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPL  311 (541)
Q Consensus       236 ~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L  311 (541)
                      .+..|+||||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.|||
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L   82 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRD-FRGNTPL   82 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCC-TTCCCHH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCCCHH
Confidence            45566777777777777777776666543    567777777777777777777777777777777777666 5677777


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCC
Q 037006          312 HITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKD  391 (541)
Q Consensus       312 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d  391 (541)
                      |+|+..|+.+++++|++.|+++...                                                ..++..+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~------------------------------------------------~~~~~~~  114 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLH------------------------------------------------SILKATN  114 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSS------------------------------------------------CGGGCCC
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHH------------------------------------------------HHhhccC
Confidence            7777777777777777776652210                                                0123345


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHc
Q 037006          392 LHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE-DGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECL  470 (541)
Q Consensus       392 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  470 (541)
                      ..|+||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..
T Consensus       115 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~  194 (236)
T 1ikn_D          115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR  194 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTS
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHcc
Confidence            5566666666666666666666666666666665 666666666666666666666666666666666666666666666


Q ss_pred             CcHHHHHHHHhCCCC
Q 037006          471 HYAGISRILMHGGAT  485 (541)
Q Consensus       471 ~~~~i~~~Ll~~ga~  485 (541)
                      ++.+++++|+++|++
T Consensus       195 ~~~~~~~~Ll~~ga~  209 (236)
T 1ikn_D          195 PSTRIQQQLGQLTLE  209 (236)
T ss_dssp             SCHHHHHHHHTTSCG
T ss_pred             CchHHHHHHHHcchh
Confidence            666666666666665

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.9e-36  Score=285.22  Aligned_cols=208  Identities=22%  Similarity=0.312  Sum_probs=169.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCC----CccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHH
Q 037006          305 RDGDTPLHITASLGYEQMVKLLLQKGA----NKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRL  380 (541)
Q Consensus       305 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~L  380 (541)
                      ..|.||||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..|+.++                     +++|
T Consensus         6 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~---------------------v~~L   64 (236)
T 1ikn_D            6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI---------------------AEAL   64 (236)
T ss_dssp             -CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHH---------------------HHCC
T ss_pred             CCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHH---------------------HHHH
Confidence            456666666666666666666665543    566777777777777777666544                     5556


Q ss_pred             HHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC------CCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCc
Q 037006          381 IEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGID------VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVE  454 (541)
Q Consensus       381 l~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d------~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~  454 (541)
                      +++|++++.++..|+||||+|+..|+.+++++|++.|++      ++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus        65 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  144 (236)
T 1ikn_D           65 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN  144 (236)
T ss_dssp             CSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            677778888888899999999999999999999999876      57788899999999999999999999999999999


Q ss_pred             ccCC-CCCCHHHHHHHcCcHHHHHHHHhCCCCCCCCcccccchhhhhhcCCCccccccccccCccccCCCCccccCCCCC
Q 037006          455 ARTS-KNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNGKVGRDQMEGKFGMKKKKLPRPRVMRGSFD  533 (541)
Q Consensus       455 ~~~~-~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (541)
                      .++. .|.||||+|+..|+.+++++|+++|++++..+..+.+++.++...++..+.+++...|.......+...-..+++
T Consensus       145 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  224 (236)
T 1ikn_D          145 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD  224 (236)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHh
Confidence            9998 999999999999999999999999999999999999999999999999999999999876654444333333333

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=3.3e-34  Score=262.66  Aligned_cols=189  Identities=28%  Similarity=0.412  Sum_probs=116.8

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHCCC-CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcC
Q 037006          273 GNTALHLAVEDRRRDCARLLLANGA-RPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECG  351 (541)
Q Consensus       273 g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g  351 (541)
                      +.|||+.|+..|+.++++.|++.+. +++..+ ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   83 (201)
T 3hra_A            5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVD-TEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG   83 (201)
T ss_dssp             CTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cccHHHHHHHhccHHHHHHHHHcCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            3444444444444444444444433 444333 34444444444444444444444444444444455555555444443


Q ss_pred             CHHHHHHhhcCCchHHHHhhCCHHHHHHHH-HcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCh
Q 037006          352 HSRLFDALKLGDSLCVAARKGEVRTMQRLI-EAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKG-IDVDAKDEDGYT  429 (541)
Q Consensus       352 ~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll-~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g-~d~~~~d~~g~t  429 (541)
                      +.++                     +++|+ ..+.+++..+..|.||||+|+..|+.+++++|+++| ++++.+|..|+|
T Consensus        84 ~~~~---------------------~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t  142 (201)
T 3hra_A           84 RTEI---------------------LAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYT  142 (201)
T ss_dssp             CHHH---------------------HHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCC
T ss_pred             CHHH---------------------HHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCC
Confidence            3332                     33344 334566666777777777777777777777777777 777777777777


Q ss_pred             HHHHHHHcCC-----HHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCC
Q 037006          430 ALHCAVESGH-----TDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG  483 (541)
Q Consensus       430 pL~~A~~~g~-----~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~g  483 (541)
                      |||+|+..++     .+++++|+++|++++.+|..|+|||++|+..|+.+++++|+++|
T Consensus       143 ~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          143 ALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            7777777776     77777777777777777777777777777777777777777765

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.2e-34  Score=256.92  Aligned_cols=158  Identities=39%  Similarity=0.575  Sum_probs=117.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCC
Q 037006          309 TPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAIN  388 (541)
Q Consensus       309 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~  388 (541)
                      ++|+.|+..|+.++|++|++.|++++.+|..|+||+++|+..++.++                     +++|+++|++++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~---------------------~~~ll~~gad~~   64 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEV---------------------VKLLISKGADVN   64 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------------------HHHHHHTTCCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHH---------------------HHHHHhcccchh
Confidence            35666777777777777777777777777777777766665555433                     556677777777


Q ss_pred             CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHH
Q 037006          389 GKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE  468 (541)
Q Consensus       389 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  468 (541)
                      .+|.+|+||||+|+..|+.++|++|+++|+|+|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+|||++|+
T Consensus        65 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~  144 (169)
T 4gpm_A           65 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR  144 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             hhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            77777888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCcHHHHHHHHhCCCCCC
Q 037006          469 CLHYAGISRILMHGGATKD  487 (541)
Q Consensus       469 ~~~~~~i~~~Ll~~ga~~~  487 (541)
                      ..|+.+++++|+++||+.+
T Consensus       145 ~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          145 EHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             HTTCHHHHHHHHTC-----
T ss_pred             HcCCHHHHHHHHHCCCCcC
Confidence            8888888888888888765

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=6.5e-34  Score=260.75  Aligned_cols=191  Identities=27%  Similarity=0.400  Sum_probs=154.7

Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHH
Q 037006          238 TSTWGPIHLALRGGHLEVLKLLLIKGA-NVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITAS  316 (541)
Q Consensus       238 ~~~~t~L~~Aa~~g~~~iv~~Ll~~g~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~  316 (541)
                      ..+.||||.|+..|+.+.++.|+..+. +++..|.+|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN-SISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHH
Confidence            346677777777777777777777654 777777777788888888888888888888877777766 667788888888


Q ss_pred             cCCHHHHHHHH-HcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcC-CCCCCCCCCC
Q 037006          317 LGYEQMVKLLL-QKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG-AAINGKDLHG  394 (541)
Q Consensus       317 ~g~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~d~~g  394 (541)
                      .|+.+++++|+ ..+++++..+..|.||||+|+..|+.+                     ++++|+++| ++++.+|..|
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~---------------------~v~~Ll~~g~~~~~~~~~~g  140 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID---------------------NVKLLLEDGREDIDFQNDFG  140 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHH---------------------HHHHHHHHCCCCTTCCCTTS
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHH---------------------HHHHHHHcCCCCcCCCCCCC
Confidence            88888888888 456677778888888888777665544                     467777887 8888888899


Q ss_pred             ChHHHHHHhcCC-----HHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCC
Q 037006          395 WTALHRASFKGK-----IEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKG  450 (541)
Q Consensus       395 ~t~L~~Aa~~g~-----~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  450 (541)
                      +||||+|+..++     .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       141 ~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          141 YTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            999999998887     89999999999999999999999999999999999999999886

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.4e-35  Score=281.20  Aligned_cols=206  Identities=22%  Similarity=0.238  Sum_probs=162.9

Q ss_pred             CchHHHHHHhcCCHH----HHHHHHHcCCCCCC----CCCCCChHHHHHHHh---CCHHHHHHHHHCCCCCCccC-----
Q 037006          240 TWGPIHLALRGGHLE----VLKLLLIKGANVNA----LTKDGNTALHLAVED---RRRDCARLLLANGARPDIRN-----  303 (541)
Q Consensus       240 ~~t~L~~Aa~~g~~~----iv~~Ll~~g~~~~~----~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~-----  303 (541)
                      |+||||.|+..|+.+    ++++|++.|++++.    .|..|+||||+|+..   |+.+++++|++.|++++...     
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            566777777777765    44555566777776    677777777777777   77777777777766654221     


Q ss_pred             -----CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHH
Q 037006          304 -----ARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQ  378 (541)
Q Consensus       304 -----~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~  378 (541)
                           +..|.||||+|+..|+.+++++|+++|++++..+..+.++                                   
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~-----------------------------------  126 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQ-----------------------------------  126 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGS-----------------------------------
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccc-----------------------------------
Confidence                 1458888888888888888888888888877776654321                                   


Q ss_pred             HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHH---cCCCCCCCCCCCChHHHHHHH--cCCHH-------HHHHH
Q 037006          379 RLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLID---KGIDVDAKDEDGYTALHCAVE--SGHTD-------VTELL  446 (541)
Q Consensus       379 ~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~---~g~d~~~~d~~g~tpL~~A~~--~g~~~-------~v~~L  446 (541)
                            .+.+..+..|+||||+|+..|+.+++++|++   +|+++|.+|..|+||||+|+.  .++.+       ++++|
T Consensus       127 ------~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~L  200 (256)
T 2etb_A          127 ------KHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGL  200 (256)
T ss_dssp             ------CCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred             ------ccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHH
Confidence                  2233445669999999999999999999999   899999999999999999998  78888       99999


Q ss_pred             HHCCCCC-------cccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCC
Q 037006          447 VKKGADV-------EARTSKNVSPMQIAECLHYAGISRILMHGGATK  486 (541)
Q Consensus       447 l~~ga~~-------~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~  486 (541)
                      +++|+++       +.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus       201 l~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          201 LQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            9999999       899999999999999999999999999988753

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=6.4e-34  Score=252.16  Aligned_cols=159  Identities=42%  Similarity=0.605  Sum_probs=116.2

Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHH
Q 037006          275 TALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR  354 (541)
Q Consensus       275 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~  354 (541)
                      ++|+.|++.|+.++|++|+++|++++..+ ..|.||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d-~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASD-SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence            34666666666666666666666666555 55666666666666666666666666666666666666666666554443


Q ss_pred             HHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHH
Q 037006          355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCA  434 (541)
Q Consensus       355 ~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A  434 (541)
                                           ++++|+++|+++|.+|.+|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|
T Consensus        85 ---------------------~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A  143 (169)
T 4gpm_A           85 ---------------------VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLA  143 (169)
T ss_dssp             ---------------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ---------------------HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence                                 35666777777888888899999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCcc
Q 037006          435 VESGHTDVTELLVKKGADVEA  455 (541)
Q Consensus       435 ~~~g~~~~v~~Ll~~ga~~~~  455 (541)
                      ++.|+.+++++|+++||+++.
T Consensus       144 ~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          144 REHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHTTCHHHHHHHHTC------
T ss_pred             HHcCCHHHHHHHHHCCCCcCC
Confidence            999999999999999999864

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=5e-35  Score=281.79  Aligned_cols=213  Identities=22%  Similarity=0.251  Sum_probs=150.7

Q ss_pred             CCCCCCCCCCchHHHHHHhcCCHHHHHHHHH----cCCCCC----CCCCCCChHHHHHHHh---CCHHHHHHHHHCCCCC
Q 037006          231 ASTERSETSTWGPIHLALRGGHLEVLKLLLI----KGANVN----ALTKDGNTALHLAVED---RRRDCARLLLANGARP  299 (541)
Q Consensus       231 ~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~----~g~~~~----~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~  299 (541)
                      +..+..+..|+||||+|+..|+.++++.|++    .+.+++    ..|..|+||||+|+..   |+.+++++|++.|+++
T Consensus         4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~   83 (273)
T 2pnn_A            4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT   83 (273)
T ss_dssp             -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred             ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence            3344555666666666666666666665554    344444    2356667777777765   6667777777666542


Q ss_pred             C-------c--c-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc--------------CCCchhHHHHHcCCHHH
Q 037006          300 D-------I--R-NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNK--------------SGKTAYDVAAECGHSRL  355 (541)
Q Consensus       300 ~-------~--~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--------------~g~t~l~~A~~~g~~~~  355 (541)
                      +       .  . .+..|.||||+|+..|+.+++++|+++|++++..+.              .|.||||+|+..|+.+ 
T Consensus        84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~-  162 (273)
T 2pnn_A           84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA-  162 (273)
T ss_dssp             TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH-
T ss_pred             cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHH-
Confidence            1       1  1 124678888888888888888888888888877776              7999999988776654 


Q ss_pred             HHHhhcCCchHHHHhhCCHHHHHHHHH---cCCCCCCCCCCCChHHHHHHhcCC---------HHHHHHHHHcCCCCC--
Q 037006          356 FDALKLGDSLCVAARKGEVRTMQRLIE---AGAAINGKDLHGWTALHRASFKGK---------IEVVRMLIDKGIDVD--  421 (541)
Q Consensus       356 ~~~l~~~~~l~~a~~~~~~~~~~~Ll~---~g~~~~~~d~~g~t~L~~Aa~~g~---------~~~v~~Ll~~g~d~~--  421 (541)
                                          ++++|++   +|++++.+|..|+||||+|+..|+         .+++++|+++|+++|  
T Consensus       163 --------------------~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~  222 (273)
T 2pnn_A          163 --------------------IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT  222 (273)
T ss_dssp             --------------------HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             --------------------HHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccc
Confidence                                5888999   999999999999999999999998         899999999999987  


Q ss_pred             -----CCCCCCChHHHHHHHcCCHHHHHHHHHCCC-CCcccCCCCCCHH
Q 037006          422 -----AKDEDGYTALHCAVESGHTDVTELLVKKGA-DVEARTSKNVSPM  464 (541)
Q Consensus       422 -----~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~t~l  464 (541)
                           .+|..|+||||+|+..|+.+++++|+++|| |.......+.+|-
T Consensus       223 ~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred             cccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence                 489999999999999999999999999999 7777666666553

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=7.1e-35  Score=280.72  Aligned_cols=205  Identities=21%  Similarity=0.269  Sum_probs=173.8

Q ss_pred             CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHH----CCCCCCc---cCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCC
Q 037006          263 GANVNALTKDGNTALHLAVEDRRRDCARLLLA----NGARPDI---RNARDGDTPLHITASL---GYEQMVKLLLQKGAN  332 (541)
Q Consensus       263 g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~---~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~  332 (541)
                      ++..+..|..|+||||+|+..|+.++|+.|++    .+++++.   ..+..|.||||+|+..   |+.+++++|++.|++
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~   82 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK   82 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence            55667789999999999999999998888886    5666542   2347899999999987   999999999999865


Q ss_pred             c-------cc----cccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCC---------
Q 037006          333 K-------YI----RNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDL---------  392 (541)
Q Consensus       333 ~-------~~----~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~---------  392 (541)
                      +       +.    .|..|.||||+|+..|+.+                     ++++|+++|++++..+.         
T Consensus        83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~---------------------~v~~Ll~~ga~~~~~~~~~~~~~~~~  141 (273)
T 2pnn_A           83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMT---------------------LVTLLVENGADVQAAANGDFFKKTKG  141 (273)
T ss_dssp             TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHH---------------------HHHHHHHTTCCTTCCBCSGGGSSCSS
T ss_pred             ccchhHHhhcccccccCCCCCHHHHHHHcCCHH---------------------HHHHHHHCCCCcCccccccccccccc
Confidence            3       22    5678999999998776654                     58889999999999987         


Q ss_pred             -----CCChHHHHHHhcCCHHHHHHHHH---cCCCCCCCCCCCChHHHHHHHcCC---------HHHHHHHHHCCCCCc-
Q 037006          393 -----HGWTALHRASFKGKIEVVRMLID---KGIDVDAKDEDGYTALHCAVESGH---------TDVTELLVKKGADVE-  454 (541)
Q Consensus       393 -----~g~t~L~~Aa~~g~~~~v~~Ll~---~g~d~~~~d~~g~tpL~~A~~~g~---------~~~v~~Ll~~ga~~~-  454 (541)
                           .|+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..|+         .+++++|+++|++++ 
T Consensus       142 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~  221 (273)
T 2pnn_A          142 RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP  221 (273)
T ss_dssp             SCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccc
Confidence                 79999999999999999999999   999999999999999999999998         899999999999997 


Q ss_pred             ------ccCCCCCCHHHHHHHcCcHHHHHHHHhCCC-CCCC
Q 037006          455 ------ARTSKNVSPMQIAECLHYAGISRILMHGGA-TKDG  488 (541)
Q Consensus       455 ------~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga-~~~~  488 (541)
                            .+|..|+||||+|+..|+.+++++|+++|| ++..
T Consensus       222 ~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~  262 (273)
T 2pnn_A          222 TLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPEC  262 (273)
T ss_dssp             TCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC----
T ss_pred             ccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchh
Confidence                  489999999999999999999999999999 5543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=3.1e-33  Score=266.60  Aligned_cols=209  Identities=23%  Similarity=0.329  Sum_probs=132.4

Q ss_pred             CccHHHHHHHcCCHH----HHHHHHhcCCCCcc----cCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCc
Q 037006          173 GQTLLHIAIAQRRPD----IVQLLLEFGPDVES----QGRCGCSTPLEAAAAA---GEALIVELLLARKASTERSETSTW  241 (541)
Q Consensus       173 g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~~~~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~~~~~~  241 (541)
                      |+||||+||..|+.+    ++++|++.|++++.    .+.. |.||||+|+..   |+.+++++|++.|++++..+.   
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~-g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~---   77 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGST-GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP---   77 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTT-TBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC---
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCC-CCCHHHHHHHccccchHHHHHHHHhcCCcccchhh---
Confidence            667777777777775    55666667777766    4443 66777777776   777777777766665543220   


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCC------------CCCc
Q 037006          242 GPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNAR------------DGDT  309 (541)
Q Consensus       242 t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~------------~g~t  309 (541)
                                       ++  .......|..|.||||+|+..|+.+++++|+++|++++..+..            .|.|
T Consensus        78 -----------------~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~t  138 (256)
T 2etb_A           78 -----------------LV--NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL  138 (256)
T ss_dssp             -----------------GG--GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSS
T ss_pred             -----------------hc--ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCC
Confidence                             00  0001122344556666666666666666666655555554422            3899


Q ss_pred             HHHHHHHcCCHHHHHHHHH---cCCCccccccCCCchhHHHHH--cCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcC
Q 037006          310 PLHITASLGYEQMVKLLLQ---KGANKYIRNKSGKTAYDVAAE--CGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG  384 (541)
Q Consensus       310 ~L~~A~~~g~~~~v~~Ll~---~g~~~~~~~~~g~t~l~~A~~--~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g  384 (541)
                      |||+|+..|+.+++++|++   .|++++..|..|+||||+|+.  .++.+..+.+              .+++++|+++|
T Consensus       139 pL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~--------------~~iv~~Ll~~g  204 (256)
T 2etb_A          139 PLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALV--------------IHMYDGLLQMG  204 (256)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHH--------------HHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHH--------------HHHHHHHHHcC
Confidence            9999999999999999999   899999999999999999988  5555532211              23456666666


Q ss_pred             CCC-------CCCCCCCChHHHHHHhcCCHHHHHHHHHcCC
Q 037006          385 AAI-------NGKDLHGWTALHRASFKGKIEVVRMLIDKGI  418 (541)
Q Consensus       385 ~~~-------~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~  418 (541)
                      +++       +.+|..|+||||+|+..|+.+++++|+++|.
T Consensus       205 a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  245 (256)
T 2etb_A          205 ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF  245 (256)
T ss_dssp             HHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence            665       5555555555555555555555555555543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=4.5e-33  Score=266.04  Aligned_cols=160  Identities=24%  Similarity=0.302  Sum_probs=134.8

Q ss_pred             CCcHHHHHH---HcCCHHHHHHHHHcC-----------CCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhC
Q 037006          307 GDTPLHITA---SLGYEQMVKLLLQKG-----------ANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKG  372 (541)
Q Consensus       307 g~t~L~~A~---~~g~~~~v~~Ll~~g-----------~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~  372 (541)
                      |.||||+|+   ..|+.+++++|++.|           .+.+..|..|+||||+|+..|+.+                  
T Consensus        46 g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~------------------  107 (260)
T 3jxi_A           46 GKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKH------------------  107 (260)
T ss_dssp             CCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHH------------------
T ss_pred             CCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHH------------------
Confidence            444444444   334444555544443           334555668999999998876654                  


Q ss_pred             CHHHHHHHHHcCCCCCCCC--------------CCCChHHHHHHhcCCHHHHHHHHH---cCCCCCCCCCCCChHHHHHH
Q 037006          373 EVRTMQRLIEAGAAINGKD--------------LHGWTALHRASFKGKIEVVRMLID---KGIDVDAKDEDGYTALHCAV  435 (541)
Q Consensus       373 ~~~~~~~Ll~~g~~~~~~d--------------~~g~t~L~~Aa~~g~~~~v~~Ll~---~g~d~~~~d~~g~tpL~~A~  435 (541)
                         ++++|+++|++++..+              ..|+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+
T Consensus       108 ---~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~  184 (260)
T 3jxi_A          108 ---YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV  184 (260)
T ss_dssp             ---HHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHH
T ss_pred             ---HHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHH
Confidence               5888999999999998              689999999999999999999999   99999999999999999999


Q ss_pred             HcCC---------HHHHHHHHHCCCCC-------cccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCC
Q 037006          436 ESGH---------TDVTELLVKKGADV-------EARTSKNVSPMQIAECLHYAGISRILMHGGATKD  487 (541)
Q Consensus       436 ~~g~---------~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~  487 (541)
                      ..++         .+++++|+++|+++       +.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus       185 ~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             HHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence            9888         79999999999999       6799999999999999999999999999987643

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=9.5e-33  Score=263.80  Aligned_cols=195  Identities=22%  Similarity=0.269  Sum_probs=144.7

Q ss_pred             CCchHHHHHHhcCCHHH----HHHHHHcCCCCCCCC----CCCChHHHHHH---HhCCHHHHHHHHHCCCCC--------
Q 037006          239 STWGPIHLALRGGHLEV----LKLLLIKGANVNALT----KDGNTALHLAV---EDRRRDCARLLLANGARP--------  299 (541)
Q Consensus       239 ~~~t~L~~Aa~~g~~~i----v~~Ll~~g~~~~~~d----~~g~t~L~~A~---~~g~~~~v~~Ll~~g~~~--------  299 (541)
                      .++++||.|+..|+.+.    +++|++.|++++..+    ..|.||||+|+   ..|+.+++++|++.|+++        
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   83 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN   83 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence            34555555555555553    233333555555443    44556666555   445556666666555331        


Q ss_pred             ---CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccc--------------cCCCchhHHHHHcCCHHHHHHhhcC
Q 037006          300 ---DIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRN--------------KSGKTAYDVAAECGHSRLFDALKLG  362 (541)
Q Consensus       300 ---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--------------~~g~t~l~~A~~~g~~~~~~~l~~~  362 (541)
                         +..+ ..|.||||+|+..|+.+++++|+++|++++..+              ..|.||||+|+..|+.+        
T Consensus        84 ~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~--------  154 (260)
T 3jxi_A           84 SPFRDVY-YRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH--------  154 (260)
T ss_dssp             CCBCCSS-EESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHH--------
T ss_pred             ccccccc-cCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHH--------
Confidence               1111 357777777777777777777777777777776              68999999998776654        


Q ss_pred             CchHHHHhhCCHHHHHHHHH---cCCCCCCCCCCCChHHHHHHhcCC---------HHHHHHHHHcCCCC-------CCC
Q 037006          363 DSLCVAARKGEVRTMQRLIE---AGAAINGKDLHGWTALHRASFKGK---------IEVVRMLIDKGIDV-------DAK  423 (541)
Q Consensus       363 ~~l~~a~~~~~~~~~~~Ll~---~g~~~~~~d~~g~t~L~~Aa~~g~---------~~~v~~Ll~~g~d~-------~~~  423 (541)
                                   ++++|++   +|++++.+|..|+||||+|+..|+         .+++++|+++|+++       +.+
T Consensus       155 -------------~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~  221 (260)
T 3jxi_A          155 -------------IVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALL  221 (260)
T ss_dssp             -------------HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCC
T ss_pred             -------------HHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcc
Confidence                         5888999   999999999999999999999888         79999999999998       679


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCcc
Q 037006          424 DEDGYTALHCAVESGHTDVTELLVKKGADVEA  455 (541)
Q Consensus       424 d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~  455 (541)
                      |..|+||||+|+..|+.+++++|+++|++...
T Consensus       222 d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          222 NNDGLSPLMMAAKTGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence            99999999999999999999999999876543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=100.00  E-value=9.3e-36  Score=297.37  Aligned_cols=285  Identities=13%  Similarity=0.088  Sum_probs=202.1

Q ss_pred             HHHHHHHH-cCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCc---ccCCCCCCcHHHH
Q 037006          138 PVLVLLVK-DGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVE---SQGRCGCSTPLEA  213 (541)
Q Consensus       138 ~~l~~a~~-~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~~~~~t~L~~  213 (541)
                      +.++.+.. .++.+.++++++.+           .++.||||+||..|+.++|++|++.|+...   ..+.. +.||||+
T Consensus        67 l~~~~a~~~~~~~~~~~~l~~~g-----------~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~-~~tpL~~  134 (376)
T 2aja_A           67 LCLYYAHYNRNAKQLWSDAHKKG-----------IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE-NYQAFRL  134 (376)
T ss_dssp             HHHHHHHTTTTCTTHHHHHHHHT-----------CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHH-HHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHcC-----------CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccC-CCCHHHH
Confidence            34555554 46778888888765           345699999999999999999999998321   12222 6789999


Q ss_pred             HHHcCCHHHHHHHHHCCCCC---CCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCC--CCCCCChHHHHHH-HhCCHH
Q 037006          214 AAAAGEALIVELLLARKAST---ERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNA--LTKDGNTALHLAV-EDRRRD  287 (541)
Q Consensus       214 A~~~g~~~iv~~Ll~~g~~~---~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~--~d~~g~t~L~~A~-~~g~~~  287 (541)
                      |+..|+.++|++|+++|+++   +..+.. +||||+|+..|+.+++++|+++|++++.  .|..|.||||+|+ ..|+.+
T Consensus       135 Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~e  213 (376)
T 2aja_A          135 AAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN  213 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred             HHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHH
Confidence            99999999999999999752   222223 8999999999999999999999999887  8888999999999 999999


Q ss_pred             HHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHH
Q 037006          288 CARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCV  367 (541)
Q Consensus       288 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~  367 (541)
                      +|++|++.|+        .|.|||++|+..|+.+++++|+++|++++..+    ++++.|+.+|+.++++...       
T Consensus       214 iv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~-------  274 (376)
T 2aja_A          214 VINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSE-------  274 (376)
T ss_dssp             HHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHH-------
T ss_pred             HHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHh-------
Confidence            9999999774        27899999999999999999999998876654    4788888888877543210       


Q ss_pred             HHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHc---------CCCCCCCCCCCChHHHHHHHcC
Q 037006          368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDK---------GIDVDAKDEDGYTALHCAVESG  438 (541)
Q Consensus       368 a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~---------g~d~~~~d~~g~tpL~~A~~~g  438 (541)
                       + .....+++.|+..+.                  .+..+.+++|++.         |+++    +.+.||||+|+..|
T Consensus       275 -~-~~~~~~~~~li~~~~------------------~~~~~~~~~Ll~~~~vk~l~~~g~~~----n~~~~~L~~A~~~g  330 (376)
T 2aja_A          275 -C-LQGFYMLRNLIRRND------------------EVLLDDIRFLLSIPGIKALAPTATIP----GDANELLRLALRLG  330 (376)
T ss_dssp             -H-HHHHHHHHHHHHHCC------------------GGGHHHHHHHHTSTTTGGGSSCCSST----TCCCHHHHHHHHHT
T ss_pred             -h-hhhHHHHHHHHHcch------------------hhHHHHHHHHHhChhhhhhhccCCCC----CCccHHHHHHHHcC
Confidence             0 001124555555541                  1235666777663         4444    35678999999999


Q ss_pred             CHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHh
Q 037006          439 HTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMH  481 (541)
Q Consensus       439 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~  481 (541)
                      +.+++++|++.|   ..++..++|++.+|...|+.++.+.-+.
T Consensus       331 ~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (376)
T 2aja_A          331 NQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVALE  370 (376)
T ss_dssp             CTTHHHHHTTSH---HHHHSCC---------------------
T ss_pred             cHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHHH
Confidence            999999999876   5567788999999999999998877654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.1e-31  Score=258.63  Aligned_cols=191  Identities=25%  Similarity=0.341  Sum_probs=131.4

Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCC--CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CccccccCCCchhHHHHHcCC
Q 037006          276 ALHLAVEDRRRDCARLLLANGAR--PDIRNARDGDTPLHITASLGYEQMVKLLLQKGA-NKYIRNKSGKTAYDVAAECGH  352 (541)
Q Consensus       276 ~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~~g~  352 (541)
                      ++|.|+..++.+.++.+++.+.+  ++..+ ..|.||||+|+..|+.+++++|++.|+ +++..+..|.||+++|+....
T Consensus        79 ~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           79 DAHPELVRRHLVTFRAMSARLLDYVVNIAD-SNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TCCHHHHHHHHHHHHHHCHHHHHHHHTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcCcCCC-CCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            33444444444444444433322  33333 345555555555555555555555554 555555555555555542211


Q ss_pred             HHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHH
Q 037006          353 SRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALH  432 (541)
Q Consensus       353 ~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~  432 (541)
                                      ...++.+++++|++.|.+++..+..|+||||+|+..|+.++|++|+++|+|+|.+|..|+||||
T Consensus       158 ----------------~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh  221 (276)
T 4hbd_A          158 ----------------KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALM  221 (276)
T ss_dssp             ----------------CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ----------------hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence                            1223445677777777777777888888888888888889999999888888888888999999


Q ss_pred             HHHHcCCHHHHHHHHH-CCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCC
Q 037006          433 CAVESGHTDVTELLVK-KGADVEARTSKNVSPMQIAECLHYAGISRILMHGG  483 (541)
Q Consensus       433 ~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~g  483 (541)
                      +|+..|+.+++++|++ .|++++.+|..|+|||++|+..|+.+++++|++++
T Consensus       222 ~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          222 CACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9999899999998888 78888888888999999999889999998888754

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.8e-31  Score=257.05  Aligned_cols=186  Identities=28%  Similarity=0.400  Sum_probs=132.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCChHHHHHHHhCCHHHHHHHHHCCC-CCCccCCCCCCcHHHHHH----
Q 037006          243 PIHLALRGGHLEVLKLLLIKGAN--VNALTKDGNTALHLAVEDRRRDCARLLLANGA-RPDIRNARDGDTPLHITA----  315 (541)
Q Consensus       243 ~L~~Aa~~g~~~iv~~Ll~~g~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~t~L~~A~----  315 (541)
                      ++|.|+..|+.+.++.+++.+.+  ++..|.+|+||||+|+..|+.+++++|++.|+ +++..+ ..|.||||+|+    
T Consensus        79 ~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           79 DAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQN-RAGYSPIMLTALATL  157 (276)
T ss_dssp             TCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCC-TTSCCHHHHGGGCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCC-CCCCCHHHHHHHHHh
Confidence            44445555555555555444333  55556666666666666666666666666665 555444 55666666666    


Q ss_pred             -HcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCC
Q 037006          316 -SLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHG  394 (541)
Q Consensus       316 -~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g  394 (541)
                       ..++.+++++|++.|.+.+..+..|+||||+|+..|+.+                     ++++|+++|+++|.+|..|
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~---------------------~v~~Ll~~gad~n~~d~~G  216 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVD---------------------VVKALLACEADVNVQDDDG  216 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHH---------------------HHHHHHHTTCCTTCCCTTS
T ss_pred             hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH---------------------HHHHHHhCCCCCCCCCCCC
Confidence             456666777777777666666677777777766655443                     3666777777888888889


Q ss_pred             ChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCC
Q 037006          395 WTALHRASFKGKIEVVRMLID-KGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKG  450 (541)
Q Consensus       395 ~t~L~~Aa~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  450 (541)
                      +||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|++++
T Consensus       217 ~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          217 STALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            999999999999999999999 79999999999999999999999999999999874

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.5e-30  Score=236.66  Aligned_cols=158  Identities=23%  Similarity=0.334  Sum_probs=112.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcC
Q 037006          305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG  384 (541)
Q Consensus       305 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g  384 (541)
                      ..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.                     +++++|+++|
T Consensus        33 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~---------------------~~v~~Ll~~g   91 (192)
T 2rfm_A           33 SYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRL---------------------GIAEKLLSKG   91 (192)
T ss_dssp             TTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCH---------------------HHHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCH---------------------HHHHHHHHCC
Confidence            4455666666666666666666666666665666666666655554443                     3355566666


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHH
Q 037006          385 AAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPM  464 (541)
Q Consensus       385 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l  464 (541)
                      ++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+
T Consensus        92 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  171 (192)
T 2rfm_A           92 SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAE  171 (192)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            66676777777777777777788888888888888887777788888888888888888888888888887777788888


Q ss_pred             HHHHHcCcHHHHHHHHhCC
Q 037006          465 QIAECLHYAGISRILMHGG  483 (541)
Q Consensus       465 ~~A~~~~~~~i~~~Ll~~g  483 (541)
                      ++|+..|+.+++++|+++|
T Consensus       172 ~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          172 ASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHhcc
Confidence            8888888888888877653

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=3.3e-30  Score=229.19  Aligned_cols=158  Identities=32%  Similarity=0.454  Sum_probs=125.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcC
Q 037006          305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG  384 (541)
Q Consensus       305 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g  384 (541)
                      ..+.++|+.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+                     ++++|+++|
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~---------------------~v~~Ll~~g   70 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE---------------------IVEVLLKNG   70 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH---------------------HHHHHHHTT
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH---------------------HHHHHHHcC
Confidence            34556777777777777777777777777777777777777766655443                     366677777


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHH
Q 037006          385 AAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPM  464 (541)
Q Consensus       385 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l  464 (541)
                      ++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        71 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l  150 (169)
T 2y1l_E           71 ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF  150 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            77777888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCcHHHHHHHHhCC
Q 037006          465 QIAECLHYAGISRILMHGG  483 (541)
Q Consensus       465 ~~A~~~~~~~i~~~Ll~~g  483 (541)
                      ++|+..|+.+++++|++.|
T Consensus       151 ~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          151 DISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHhCCHHHHHHHHHcC
Confidence            8888888888888888775

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=1.4e-30  Score=229.75  Aligned_cols=157  Identities=29%  Similarity=0.387  Sum_probs=117.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCC
Q 037006          307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAA  386 (541)
Q Consensus       307 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~  386 (541)
                      ..|||+.|+..|+.+++++|++.|++++..+..|+||||+|+. |+.                     +++++|+++|++
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~---------------------~~v~~Ll~~g~~   62 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNP---------------------EIARRLLLRGAN   62 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCH---------------------HHHHHHHHTTCC
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcH---------------------HHHHHHHHcCCC
Confidence            4566777777777777777777777776667777777666554 443                     346666777777


Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCC-CcccCCCCCCHHH
Q 037006          387 INGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGAD-VEARTSKNVSPMQ  465 (541)
Q Consensus       387 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~l~  465 (541)
                      ++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.|||+
T Consensus        63 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~  142 (162)
T 1ihb_A           63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD  142 (162)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHH
Confidence            777777788888888888888888888888888888888888888888888888888888888876 5777888888888


Q ss_pred             HHHHcCcHHHHHHHHhCCCC
Q 037006          466 IAECLHYAGISRILMHGGAT  485 (541)
Q Consensus       466 ~A~~~~~~~i~~~Ll~~ga~  485 (541)
                      +|+..|+.+++++|+++||+
T Consensus       143 ~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          143 LARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHTTCHHHHHHHHHTC--
T ss_pred             HHHHcCCHHHHHHHHHhCCC
Confidence            88888888888888888774

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=3e-30  Score=234.58  Aligned_cols=163  Identities=25%  Similarity=0.238  Sum_probs=154.7

Q ss_pred             CCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHH
Q 037006          166 ADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIH  245 (541)
Q Consensus       166 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~  245 (541)
                      .+.+|..|.||||+||..|+.++|++|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++..+..|+||||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIE-GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM  106 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccccccccc-CccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            3557889999999999999999999999999999988876 899999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHH
Q 037006          246 LALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKL  325 (541)
Q Consensus       246 ~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~  325 (541)
                      +|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.|||++|+..|+.+++++
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~t~l~~A~~~~~~~~v~~  185 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD-LTGLTAEASARIFGRQEVIKI  185 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC-TTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHhCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999887 789999999999999999999


Q ss_pred             HHHcC
Q 037006          326 LLQKG  330 (541)
Q Consensus       326 Ll~~g  330 (541)
                      |++.|
T Consensus       186 Ll~~~  190 (192)
T 2rfm_A          186 FTEVR  190 (192)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            99864

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=1.5e-30  Score=232.10  Aligned_cols=167  Identities=24%  Similarity=0.317  Sum_probs=77.5

Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCCC-CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCH
Q 037006          275 TALHLAVEDRRRDCARLLLANGAR-PDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHS  353 (541)
Q Consensus       275 t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~  353 (541)
                      ||||+|+..|+.+++++|++.+.+ ++..+ ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPD-ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT   82 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCSGGGGCCC-TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCcccccCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence            344444444444444444444433 22222 3344444444444444444444444444444444444444444333332


Q ss_pred             HHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHH
Q 037006          354 RLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHC  433 (541)
Q Consensus       354 ~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~  433 (541)
                      +                     ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        83 ~---------------------~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  141 (172)
T 3v30_A           83 D---------------------IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDL  141 (172)
T ss_dssp             H---------------------HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             H---------------------HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            2                     2333444444445455555555555555555555555555555555555555555555


Q ss_pred             HHHcCCHHHHHHHHHCCCCCcccCCCCCCH
Q 037006          434 AVESGHTDVTELLVKKGADVEARTSKNVSP  463 (541)
Q Consensus       434 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~  463 (541)
                      |+..|+.+++++|+++|+++..++..|.||
T Consensus       142 A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          142 AVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             HHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            555555555555555555555555555444

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=3.6e-30  Score=228.43  Aligned_cols=159  Identities=25%  Similarity=0.293  Sum_probs=132.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCC
Q 037006          306 DGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGA  385 (541)
Q Consensus       306 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~  385 (541)
                      .|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+                     ++++|+++|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~---------------------~v~~Ll~~g~   60 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIA---------------------VVEFLLQNGA   60 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHH---------------------HHHHHHHTTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHH---------------------HHHHHHHcCC
Confidence            4677888888888888888888888777777888888877777665544                     4667778888


Q ss_pred             CCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHH
Q 037006          386 AINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQ  465 (541)
Q Consensus       386 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~  465 (541)
                      +++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||++
T Consensus        61 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~  140 (167)
T 3v31_A           61 DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMD  140 (167)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            88888888888888888888888888888888888888888888999888888888888888888888888888889999


Q ss_pred             HHHHcCcHHHHHHHHhCCCC
Q 037006          466 IAECLHYAGISRILMHGGAT  485 (541)
Q Consensus       466 ~A~~~~~~~i~~~Ll~~ga~  485 (541)
                      +|+..|+.+++++|++++++
T Consensus       141 ~A~~~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A          141 LAVALGYRSVQQVIESHLLK  160 (167)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHHH
Confidence            98888888888888887654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=3.9e-30  Score=229.43  Aligned_cols=169  Identities=26%  Similarity=0.327  Sum_probs=134.9

Q ss_pred             CccHHHHHHHcCCHHHHHHHHhcCCC-CcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcC
Q 037006          173 GQTLLHIAIAQRRPDIVQLLLEFGPD-VESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGG  251 (541)
Q Consensus       173 g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g  251 (541)
                      +.||||+|+..|+.++|++|++.+.+ ++..+.. |.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDER-GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTT-SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCC
Confidence            45788888888888888888888876 5555554 788888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 037006          252 HLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGA  331 (541)
Q Consensus       252 ~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  331 (541)
                      +.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.|||++|+..|+.+++++|+++|+
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (172)
T 3v30_A           81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEA-DSGYTPMDLAVALGYRKVQQVIENHIL  159 (172)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC-CCCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888776 678888888888888888888888888


Q ss_pred             CccccccCCCch
Q 037006          332 NKYIRNKSGKTA  343 (541)
Q Consensus       332 ~~~~~~~~g~t~  343 (541)
                      +....+..|.||
T Consensus       160 ~~~~~~~~~~~p  171 (172)
T 3v30_A          160 KLFQSNLVPADP  171 (172)
T ss_dssp             HHSCC-------
T ss_pred             HHhcccCCCCCC
Confidence            877777777665

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=4.2e-33  Score=260.48  Aligned_cols=200  Identities=20%  Similarity=0.157  Sum_probs=123.3

Q ss_pred             HHHHHhcCCCCcccCCC--CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCC
Q 037006          189 VQLLLEFGPDVESQGRC--GCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANV  266 (541)
Q Consensus       189 v~~Ll~~g~~~~~~~~~--~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~  266 (541)
                      |+.|++.|++++..+..  .+.|||++|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|++.|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            35566666665543322  2445666677777777777777666666666677777777777777777777777777777


Q ss_pred             CCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHH--HHcCCHHHHHHHHHcCCCccccccCCCchh
Q 037006          267 NALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHIT--ASLGYEQMVKLLLQKGANKYIRNKSGKTAY  344 (541)
Q Consensus       267 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l  344 (541)
                      +..|..|+||||+|+..|+.+++++|++.|++++..++..|.||||+|  +..|+.+++++|++.|++++..+..|.+++
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l  160 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL  160 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH
Confidence            777777777777777777777777777777777766545677777777  677777777777777777777666666666


Q ss_pred             HHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCC--CCCCCCCCChHHHHHHhcCCHHHHHH
Q 037006          345 DVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAA--INGKDLHGWTALHRASFKGKIEVVRM  412 (541)
Q Consensus       345 ~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~--~~~~d~~g~t~L~~Aa~~g~~~~v~~  412 (541)
                      +.++..+.                        .++|++.|++  ++.+|..|+||||+|+..|+.++|+.
T Consensus       161 ~~~~~~~~------------------------~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          161 WDYSAEFG------------------------DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             SCBCCSST------------------------TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             HHHhhccc------------------------cccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence            54332221                        1224444554  44455556666666666555555543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=1.8e-33  Score=280.80  Aligned_cols=272  Identities=15%  Similarity=0.091  Sum_probs=190.2

Q ss_pred             CccHHHHHHH-cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCchHHHHHH
Q 037006          173 GQTLLHIAIA-QRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKAST---ERSETSTWGPIHLAL  248 (541)
Q Consensus       173 g~t~L~~A~~-~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~---~~~~~~~~t~L~~Aa  248 (541)
                      +.+++++|.. .++.+++++|++.|.+        +.||||+|+..|+.+++++|+++|+..   +..+..+.||||+|+
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~--------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa  136 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKKGIK--------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA  136 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHHTCC--------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCC--------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence            4567888877 5788999999998876        459999999999999999999998732   234456788999999


Q ss_pred             hcCCHHHHHHHHHcCCCC---CCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCc--cCCCCCCcHHHHHH-HcCCHHH
Q 037006          249 RGGHLEVLKLLLIKGANV---NALTKDGNTALHLAVEDRRRDCARLLLANGARPDI--RNARDGDTPLHITA-SLGYEQM  322 (541)
Q Consensus       249 ~~g~~~iv~~Ll~~g~~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~~g~t~L~~A~-~~g~~~~  322 (541)
                      ..|+.++|++|+++|+++   +..+.+ .||||+|+..|+.++|++|+++|++++.  .+ ..|.||||+|+ ..|+.++
T Consensus       137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d-~~g~TpL~~Aa~~~G~~ei  214 (376)
T 2aja_A          137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQ-AENYYAFRWAAVGRGHHNV  214 (376)
T ss_dssp             HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHH-HHHHHHHHHHHSTTCCHHH
T ss_pred             HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccC-CCCCCHHHHHHHHCCCHHH
Confidence            999999999999999752   222223 8999999999999999999999998765  44 56889999999 9999999


Q ss_pred             HHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHH
Q 037006          323 VKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRAS  402 (541)
Q Consensus       323 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa  402 (541)
                      +++|++.|+       .|.||+++|+.+|+.++                     +++|+++|++++..+    ++++.|+
T Consensus       215 v~~Ll~~ga-------~~~taL~~Aa~~g~~ev---------------------v~lL~~~ga~~~~~~----~~l~~A~  262 (376)
T 2aja_A          215 INFLLDCPV-------MLAYAEIHEFEYGEKYV---------------------NPFIARHVNRLKEMH----DAFKLSN  262 (376)
T ss_dssp             HHHHTTSHH-------HHHHHHHCTTTTTTTTH---------------------HHHHHHHHHHHHHHH----TTTTTTS
T ss_pred             HHHHHhCCC-------ccchHHHHHHHCCCHHH---------------------HHHHHhcCccccccc----HHHHHHH
Confidence            999998764       26788887777666654                     666777777766544    4677888


Q ss_pred             hcCCHHH------------HHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHC---------CCCCcccCCCCC
Q 037006          403 FKGKIEV------------VRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKK---------GADVEARTSKNV  461 (541)
Q Consensus       403 ~~g~~~~------------v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~---------ga~~~~~~~~g~  461 (541)
                      ..|+.++            ++.|+..+.                  .+..+.+++|++.         |++++    .+.
T Consensus       263 ~~g~~~vv~~~~~~~~~~~~~~li~~~~------------------~~~~~~~~~Ll~~~~vk~l~~~g~~~n----~~~  320 (376)
T 2aja_A          263 PDGVFDLVTKSECLQGFYMLRNLIRRND------------------EVLLDDIRFLLSIPGIKALAPTATIPG----DAN  320 (376)
T ss_dssp             SSSCCCCSSHHHHHHHHHHHHHHHHHCC------------------GGGHHHHHHHHTSTTTGGGSSCCSSTT----CCC
T ss_pred             HCCChhhhcHHhhhhhHHHHHHHHHcch------------------hhHHHHHHHHHhChhhhhhhccCCCCC----Ccc
Confidence            8887663            345555431                  1235667777763         44443    456


Q ss_pred             CHHHHHHHcCcHHHHHHHHhCCCCCCCCcccccchhhhhhcCCCcccccc
Q 037006          462 SPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNGKVGRDQM  511 (541)
Q Consensus       462 t~l~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (541)
                      |||++|+..|+.+++++|++.|...   +..+.++...+-..++.+..++
T Consensus       321 ~~L~~A~~~g~~e~v~lLl~~~~v~---~~~~~~~~~~~~~~~~~~~~~~  367 (376)
T 2aja_A          321 ELLRLALRLGNQGACALLLSIPSVL---ALTKANNYYINETGGRLDLRAV  367 (376)
T ss_dssp             HHHHHHHHHTCTTHHHHHTTSHHHH---HSCC------------------
T ss_pred             HHHHHHHHcCcHHHHHHHHcChHHH---HHHHHhccccccccccccHHHH
Confidence            8999999999999999999876432   2233333444555555554443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=2.2e-29  Score=223.81  Aligned_cols=160  Identities=33%  Similarity=0.425  Sum_probs=140.9

Q ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHH
Q 037006          169 ADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLAL  248 (541)
Q Consensus       169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa  248 (541)
                      ....+.++|++||..|+.++|++|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++..+..|+||||+|+
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDAS-GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            3456778999999999999999999999998887776 889999999999999999999999999988889999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 037006          249 RGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQ  328 (541)
Q Consensus       249 ~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  328 (541)
                      ..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.|||++|+..|+.+++++|++
T Consensus        89 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD-KFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHhCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988777 778999999999999999999987


Q ss_pred             cC
Q 037006          329 KG  330 (541)
Q Consensus       329 ~g  330 (541)
                      .|
T Consensus       168 ~G  169 (169)
T 2y1l_E          168 LN  169 (169)
T ss_dssp             C-
T ss_pred             cC
Confidence            65

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=1.5e-29  Score=223.22  Aligned_cols=158  Identities=28%  Similarity=0.358  Sum_probs=138.3

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcC
Q 037006          172 QGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGG  251 (541)
Q Consensus       172 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g  251 (541)
                      ...||||+|+..|+.++|++|++.|++++..+.. |.||||+|+. |+.+++++|+++|++++..+..|+||||+|+..|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTT-SCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCcc-CccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            4568999999999999999999999988887776 8899999888 9999999999999999988889999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCC-CccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 037006          252 HLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARP-DIRNARDGDTPLHITASLGYEQMVKLLLQKG  330 (541)
Q Consensus       252 ~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  330 (541)
                      +.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++. +..+ ..|.||||+|+..|+.+++++|+++|
T Consensus        82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A           82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN-HKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcC-CCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999998884 5555 77899999999999999999999988


Q ss_pred             CC
Q 037006          331 AN  332 (541)
Q Consensus       331 ~~  332 (541)
                      ++
T Consensus       161 Ad  162 (162)
T 1ihb_A          161 AG  162 (162)
T ss_dssp             --
T ss_pred             CC
Confidence            75

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=2e-29  Score=223.56  Aligned_cols=159  Identities=26%  Similarity=0.345  Sum_probs=142.5

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcC
Q 037006          172 QGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGG  251 (541)
Q Consensus       172 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g  251 (541)
                      .|.||||+|+..|+.++|++|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEE-GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCC-CCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            4778999999999999999999999888888776 889999999999999999999999999988888999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 037006          252 HLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGA  331 (541)
Q Consensus       252 ~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  331 (541)
                      +.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.|||++|+..|+.+++++|++++.
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET-DSGYNSMDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988877 778999999999999999999988765


Q ss_pred             C
Q 037006          332 N  332 (541)
Q Consensus       332 ~  332 (541)
                      +
T Consensus       160 ~  160 (167)
T 3v31_A          160 K  160 (167)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=1.5e-29  Score=227.19  Aligned_cols=166  Identities=24%  Similarity=0.233  Sum_probs=135.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcC
Q 037006          306 DGDTPLHITASLGYEQMVKLLLQK-GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG  384 (541)
Q Consensus       306 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g  384 (541)
                      .+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+                     ++++|+++|
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~---------------------~v~~Ll~~g   62 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSA---------------------VVEMLIMRG   62 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHH---------------------HHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHH---------------------HHHHHHHcC
Confidence            466777777777887877777776 5567777777888877776665544                     466777888


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHH
Q 037006          385 AAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPM  464 (541)
Q Consensus       385 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l  464 (541)
                      ++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+
T Consensus        63 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl  142 (179)
T 3f6q_A           63 ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV  142 (179)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGG
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcH
Confidence            88888888888999999999999999999999999999888999999999999999999999999999998899999999


Q ss_pred             HHHHHcCcHHHHHHHHhCCCCCCCCccc
Q 037006          465 QIAECLHYAGISRILMHGGATKDGIQQT  492 (541)
Q Consensus       465 ~~A~~~~~~~i~~~Ll~~ga~~~~~~~~  492 (541)
                      ++|+..++.+++++|+++|++++.....
T Consensus       143 ~~A~~~~~~~~~~~L~~~g~~~~~~~~~  170 (179)
T 3f6q_A          143 DKAKAPLRELLRERAEKMGQNLNRIPYK  170 (179)
T ss_dssp             GGSCHHHHHHHHHHHHHTTCCCSCBCCC
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcccCCcc
Confidence            9998888899999999998887654433

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=3.4e-29  Score=218.70  Aligned_cols=149  Identities=32%  Similarity=0.434  Sum_probs=105.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCC
Q 037006          309 TPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAIN  388 (541)
Q Consensus       309 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~  388 (541)
                      |+|+.|+..|+.+++++|++.|++++ .+..|.||||+|+..|+.+                     ++++|+++|++++
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~---------------------~v~~Ll~~g~~~~   61 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFS---------------------TTEVLLRAGVSRD   61 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHH---------------------HHHHHHTTTCCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHH---------------------HHHHHHHcCCCCC
Confidence            45555555555555555555555443 3555555555555444333                     3455555666666


Q ss_pred             CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHH
Q 037006          389 GKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE  468 (541)
Q Consensus       389 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  468 (541)
                      .++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+
T Consensus        62 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  141 (153)
T 1awc_B           62 ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISI  141 (153)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            67777778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCcHHHHHHH
Q 037006          469 CLHYAGISRIL  479 (541)
Q Consensus       469 ~~~~~~i~~~L  479 (541)
                      ..|+.+++++|
T Consensus       142 ~~~~~~i~~~L  152 (153)
T 1awc_B          142 DNGNEDLAEIL  152 (153)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HcCCHHHHHHh
Confidence            88888888776

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.9e-32  Score=256.06  Aligned_cols=182  Identities=21%  Similarity=0.167  Sum_probs=103.4

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCH
Q 037006          274 NTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHS  353 (541)
Q Consensus       274 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~  353 (541)
                      .||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.
T Consensus        22 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~  100 (229)
T 2vge_A           22 LVLLLDAALTGELEVVQQAVKEMNDPSQPN-EEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDT  100 (229)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHSSCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            344444444444444444444444444433 3444444444444444444444444444444444444444444443332


Q ss_pred             HHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCC-CCCChHHHHH--HhcCCHHHHHHHHHcCCCCCCCCCCCChH
Q 037006          354 RLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKD-LHGWTALHRA--SFKGKIEVVRMLIDKGIDVDAKDEDGYTA  430 (541)
Q Consensus       354 ~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d-~~g~t~L~~A--a~~g~~~~v~~Ll~~g~d~~~~d~~g~tp  430 (541)
                      +                     ++++|+++|++++..+ ..|+||||+|  +..|+.+++++|+++|++++..|..|.||
T Consensus       101 ~---------------------~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~  159 (229)
T 2vge_A          101 V---------------------ICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA  159 (229)
T ss_dssp             H---------------------HHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEE
T ss_pred             H---------------------HHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHH
Confidence            2                     2444445555555554 4666777777  67777777777777777777777777777


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCC--CcccCCCCCCHHHHHHHcCcHHHHHHHH
Q 037006          431 LHCAVESGHTDVTELLVKKGAD--VEARTSKNVSPMQIAECLHYAGISRILM  480 (541)
Q Consensus       431 L~~A~~~g~~~~v~~Ll~~ga~--~~~~~~~g~t~l~~A~~~~~~~i~~~Ll  480 (541)
                      ++.++..+   ..++|++.|++  ++.+|..|+||||+|+..|+.++++.++
T Consensus       160 l~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          160 LWDYSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             SSCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             HHHHhhcc---ccccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            76543333   22566777776  5667777777777777777777765533

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=2.1e-29  Score=223.05  Aligned_cols=157  Identities=26%  Similarity=0.350  Sum_probs=118.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHH-cCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcC
Q 037006          306 DGDTPLHITASLGYEQMVKLLLQ-KGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG  384 (541)
Q Consensus       306 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g  384 (541)
                      .+.|||+.|+..|+.++++.|++ .+.+++..+..|.||||+|+..|+.+                     ++++|+++|
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~---------------------~v~~Ll~~g   65 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS---------------------VVEYLLQHG   65 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHH---------------------HHHHHHHTT
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHH---------------------HHHHHHhcC
Confidence            45566666666666666666665 33455555666666666665554443                     356666677


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHH
Q 037006          385 AAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPM  464 (541)
Q Consensus       385 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l  464 (541)
                      ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+
T Consensus        66 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  145 (165)
T 3twr_A           66 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL  145 (165)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTG
T ss_pred             CCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChh
Confidence            77777788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCcHHHHHHHHhCCC
Q 037006          465 QIAECLHYAGISRILMHGGA  484 (541)
Q Consensus       465 ~~A~~~~~~~i~~~Ll~~ga  484 (541)
                      ++|.. ++.+++++|+++||
T Consensus       146 ~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          146 DLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             GGSCT-TCHHHHHHHHTC--
T ss_pred             HhHhc-CChHHHHHHhhccc
Confidence            88766 77888888888876

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=9.9e-29  Score=221.85  Aligned_cols=167  Identities=25%  Similarity=0.274  Sum_probs=122.7

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhc-CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhc
Q 037006          172 QGQTLLHIAIAQRRPDIVQLLLEF-GPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRG  250 (541)
Q Consensus       172 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~  250 (541)
                      ++.++||.||..|+.++|++|++. +.+++..+.. |.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDH-GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCC-CCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            456777777777777777777776 3455555554 77777777777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 037006          251 GHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKG  330 (541)
Q Consensus       251 g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  330 (541)
                      |+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.|||++|+..++.+++++|++.|
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~tpl~~A~~~~~~~~~~~L~~~g  161 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN-KYGEMPVDKAKAPLRELLRERAEKMG  161 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCC-TTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhc-cCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            77777777777777777777777777777777777777777777777777766 66777777777777777777777777


Q ss_pred             CCccccccCC
Q 037006          331 ANKYIRNKSG  340 (541)
Q Consensus       331 ~~~~~~~~~g  340 (541)
                      ++++..+..+
T Consensus       162 ~~~~~~~~~~  171 (179)
T 3f6q_A          162 QNLNRIPYKD  171 (179)
T ss_dssp             CCCSCBCCCC
T ss_pred             cCcccCCccc
Confidence            7776555443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=2.4e-28  Score=213.27  Aligned_cols=150  Identities=28%  Similarity=0.368  Sum_probs=105.4

Q ss_pred             ccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCH
Q 037006          174 QTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHL  253 (541)
Q Consensus       174 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~  253 (541)
                      .|+||.|+..|+.++|++|++.|++++. +. .|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFTT-DW-LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCCC-CT-TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCCc-CC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence            4677777777777777777777776542 22 266777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q 037006          254 EVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLL  326 (541)
Q Consensus       254 ~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  326 (541)
                      +++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.|||++|+..|+.+++++|
T Consensus        81 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS-KFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC-CCCCCHHHHHHHcCCHHHHHHh
Confidence            77777777777777777777777777777777777777777777776665 5667777777777777776665

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=2.5e-28  Score=213.95  Aligned_cols=153  Identities=28%  Similarity=0.409  Sum_probs=122.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHc-CCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCC
Q 037006          307 GDTPLHITASLGYEQMVKLLLQK-GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGA  385 (541)
Q Consensus       307 g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~  385 (541)
                      +.|||+.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.                     +++++|+++|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~---------------------~~v~~Ll~~g~   59 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGST---------------------AIALELLKQGA   59 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCH---------------------HHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCH---------------------HHHHHHHHCCC
Confidence            34677777777777777777776 33667777777777776 554444                     34666777778


Q ss_pred             CCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHH
Q 037006          386 AINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQ  465 (541)
Q Consensus       386 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~  465 (541)
                      +++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ ++++.+|..|.|||+
T Consensus        60 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~  138 (156)
T 1bd8_A           60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLE  138 (156)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHH
T ss_pred             CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHH
Confidence            8888888888888888888888888888888888888888888888888888888888888888 888888888888888


Q ss_pred             HHHHcCcHHHHHHHHhC
Q 037006          466 IAECLHYAGISRILMHG  482 (541)
Q Consensus       466 ~A~~~~~~~i~~~Ll~~  482 (541)
                      +|+..|+.+++++|+++
T Consensus       139 ~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          139 LALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHSCCHHHHHHHHTT
T ss_pred             HHHHcCcHHHHHHHHhh
Confidence            88888888888888864

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1.6e-28  Score=217.38  Aligned_cols=159  Identities=31%  Similarity=0.372  Sum_probs=100.4

Q ss_pred             CCCCccHHHHHHHcCCHHHHHHHHhcC-CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHH
Q 037006          170 DAQGQTLLHIAIAQRRPDIVQLLLEFG-PDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLAL  248 (541)
Q Consensus       170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa  248 (541)
                      |..|.|+||.|+..|+.++|++|++.+ .+++..+.. |.||||+|+..|+.+++++|+++|++++..+..|+||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGR-QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTT-CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccC-CCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            445666666666666666666666533 333333333 566666666666666666666666666666666666666666


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 037006          249 RGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQ  328 (541)
Q Consensus       249 ~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  328 (541)
                      ..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.|||++|+. |+.+++++|++
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~t~l~~a~~-~~~~i~~~L~~  161 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN-RDGNTPLDLVKD-GDTDIQDLLRG  161 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCTGGGSCT-TCHHHHHHHHT
T ss_pred             HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCChhHhHhc-CChHHHHHHhh
Confidence            6666666666666666666666666666666666666666666666666666655 556666666554 66666666666


Q ss_pred             cCC
Q 037006          329 KGA  331 (541)
Q Consensus       329 ~g~  331 (541)
                      .|+
T Consensus       162 ~gA  164 (165)
T 3twr_A          162 DAA  164 (165)
T ss_dssp             C--
T ss_pred             ccc
Confidence            554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=2.3e-29  Score=237.13  Aligned_cols=180  Identities=21%  Similarity=0.190  Sum_probs=134.5

Q ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhc
Q 037006          171 AQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRG  250 (541)
Q Consensus       171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~  250 (541)
                      ..|.||||.|+..|+.++++.|+++|++++...  .+.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~--~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP--LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccCc--hhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            468999999999999999999999999998652  389999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHH--HHcCCHHHHHHHHH
Q 037006          251 GHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHIT--ASLGYEQMVKLLLQ  328 (541)
Q Consensus       251 g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~  328 (541)
                      |+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..+...+.||||+|  +..|+.+++++|++
T Consensus        81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~  160 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  160 (239)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988855566999999  78899999999999


Q ss_pred             cCCCcccc---------ccCCCchhHHHHHcCC
Q 037006          329 KGANKYIR---------NKSGKTAYDVAAECGH  352 (541)
Q Consensus       329 ~g~~~~~~---------~~~g~t~l~~A~~~g~  352 (541)
                      .|++++..         +..+.++.+++...|.
T Consensus       161 ~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          161 VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             hhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            99887765         5567777777766665

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=5.3e-29  Score=234.60  Aligned_cols=111  Identities=32%  Similarity=0.433  Sum_probs=60.6

Q ss_pred             HHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccc
Q 037006          377 MQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR  456 (541)
Q Consensus       377 ~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~  456 (541)
                      +++|++.|++++.+|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+
T Consensus        53 v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~  132 (239)
T 1ycs_B           53 VQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM  132 (239)
T ss_dssp             HHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccee
Confidence            33444444445555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCCCC-CHHHHH--HHcCcHHHHHHHHhCCCCCC
Q 037006          457 TSKNV-SPMQIA--ECLHYAGISRILMHGGATKD  487 (541)
Q Consensus       457 ~~~g~-t~l~~A--~~~~~~~i~~~Ll~~ga~~~  487 (541)
                      +..|. ||||+|  +..|+.+++++|+++|++.+
T Consensus       133 ~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~  166 (239)
T 1ycs_B          133 TYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG  166 (239)
T ss_dssp             CSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTT
T ss_pred             cCCCCcchHHHHHHhhhccHHHHHHHHHhhhccc
Confidence            54444 555555  44455555555555555544

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=1.8e-27  Score=208.45  Aligned_cols=151  Identities=30%  Similarity=0.350  Sum_probs=83.8

Q ss_pred             ccHHHHHHHcCCHHHHHHHHhc-CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCC
Q 037006          174 QTLLHIAIAQRRPDIVQLLLEF-GPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGH  252 (541)
Q Consensus       174 ~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~  252 (541)
                      .|+||+|+..|+.+++++|++. +.+++..+.. |.||||+ +..|+.+++++|+++|++++..+..|+||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRF-GKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTT-SCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCC-CCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            3555555555555555555555 2244444443 5555555 55555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 037006          253 LEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQ  328 (541)
Q Consensus       253 ~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  328 (541)
                      .+++++|+++|++++..|..|.||||+|+..|+.+++++|++. ++++..+ ..|.|||++|+..|+.+++++|++
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~-~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRD-ARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCC-TTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcC-CCCCCHHHHHHHcCcHHHHHHHHh
Confidence            5555555555555555555555555555555555555555555 5555444 445555555555555555555554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=3e-27  Score=201.96  Aligned_cols=134  Identities=22%  Similarity=0.290  Sum_probs=126.9

Q ss_pred             CCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHH
Q 037006          330 GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEV  409 (541)
Q Consensus       330 g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~  409 (541)
                      +++++..+..|.||||+|+..|+.+                     ++++|+++|++++.+|..|+||||+|+. |+.++
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~---------------------~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~   59 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVE---------------------TVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQV   59 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHH---------------------HHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHH
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHH---------------------HHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHH
Confidence            4678889999999999988776654                     4888999999999999999999999999 99999


Q ss_pred             HHHHHHcCCCCCCCCCC-CChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q 037006          410 VRMLIDKGIDVDAKDED-GYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGAT  485 (541)
Q Consensus       410 v~~Ll~~g~d~~~~d~~-g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~  485 (541)
                      +++|+++|++++.+|.. |+||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..++.+++++|+++||+
T Consensus        60 v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           60 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999 99999999999999999999999999999999999999999999999999999999985

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=2.1e-26  Score=196.64  Aligned_cols=133  Identities=25%  Similarity=0.303  Sum_probs=110.2

Q ss_pred             CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHH
Q 037006          297 ARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRT  376 (541)
Q Consensus       297 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~  376 (541)
                      ++++..+ ..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+. |+.                     ++
T Consensus         3 ~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~---------------------~~   59 (136)
T 1d9s_A            3 PGIHMLG-GSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSA---------------------QV   59 (136)
T ss_dssp             CCCSCCC-CCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCH---------------------HH
T ss_pred             CCccCCC-CCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCH---------------------HH
Confidence            4555555 567777777777777777777777777777777788888777765 554                     34


Q ss_pred             HHHHHHcCCCCCCCCCC-CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCC
Q 037006          377 MQRLIEAGAAINGKDLH-GWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGAD  452 (541)
Q Consensus       377 ~~~Ll~~g~~~~~~d~~-g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~  452 (541)
                      +++|+++|++++.+|.. |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|||
T Consensus        60 v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           60 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            67778888888888888 89999999999999999999999999999999999999999999999999999999886

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=1.9e-27  Score=214.19  Aligned_cols=167  Identities=15%  Similarity=0.096  Sum_probs=116.2

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCH----HHHHHHHHcCCCccccccCCCchhHHHHH
Q 037006          274 NTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYE----QMVKLLLQKGANKYIRNKSGKTAYDVAAE  349 (541)
Q Consensus       274 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  349 (541)
                      .++|+.|+..|+.+.++.++..+.+  ..++..|+||||+|+..|+.    +++++|+++|++++.+|..|+||||+|+.
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~   84 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ   84 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            3556666666666666666655432  22223467777777776654    47777777777777777777777777777


Q ss_pred             cCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCC-hHHHHHHhcC-----CHHHHHHHHH-cCCCCCC
Q 037006          350 CGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGW-TALHRASFKG-----KIEVVRMLID-KGIDVDA  422 (541)
Q Consensus       350 ~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~-t~L~~Aa~~g-----~~~~v~~Ll~-~g~d~~~  422 (541)
                      .|+.++..               ..+++++|+++|+++|.+|..|+ ||||+|+..+     +.+++++|++ +|+|++.
T Consensus        85 ~~~~~~~~---------------~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~  149 (186)
T 3t8k_A           85 GGGNDITG---------------TTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI  149 (186)
T ss_dssp             HCTTCHHH---------------HHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC
T ss_pred             cCCcchhh---------------HHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc
Confidence            66544321               13567778888888888888888 8888888743     3568888888 7888888


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccC
Q 037006          423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEART  457 (541)
Q Consensus       423 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~  457 (541)
                      +|..|+||||+|++.|+.++|++|+++....+.++
T Consensus       150 ~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          150 KDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             CCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence            88888888888888888888888887655555443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=1e-26  Score=203.70  Aligned_cols=141  Identities=25%  Similarity=0.304  Sum_probs=107.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcC
Q 037006          305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG  384 (541)
Q Consensus       305 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g  384 (541)
                      ..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+ .|+                     .+++++|+++|
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~---------------------~~~v~~Ll~~g   67 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGS---------------------ARVAELLLLHG   67 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTC---------------------HHHHHHHHTTT
T ss_pred             ccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCC---------------------HHHHHHHHHcC
Confidence            56788888888888888888888888888888888888888763 444                     45577788888


Q ss_pred             CCCCCCCCCCCh-HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCH
Q 037006          385 AAINGKDLHGWT-ALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSP  463 (541)
Q Consensus       385 ~~~~~~d~~g~t-~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~  463 (541)
                      ++++.+|..|+| |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus        68 ~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  147 (156)
T 1bi7_B           68 AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDA  147 (156)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------
T ss_pred             CCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcc
Confidence            889989989998 9999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHH
Q 037006          464 MQIA  467 (541)
Q Consensus       464 l~~A  467 (541)
                      .+-+
T Consensus       148 ~~~~  151 (156)
T 1bi7_B          148 AEGP  151 (156)
T ss_dssp             ----
T ss_pred             cccC
Confidence            7744

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=2.6e-27  Score=213.19  Aligned_cols=159  Identities=13%  Similarity=0.110  Sum_probs=142.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCccccc-cCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCC
Q 037006          307 GDTPLHITASLGYEQMVKLLLQKGANKYIRN-KSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGA  385 (541)
Q Consensus       307 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~  385 (541)
                      +.++|+.|+..|+.+.++.+++.+.+  ..+ ..|+||||+|+.+|+.+.                 +.+++++|+++|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~-----------------~~~iv~~Ll~~Ga   66 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEA-----------------RYKISMFLINKGA   66 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHH-----------------HHHHHHHHHHTTC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcch-----------------HHHHHHHHHHCCC
Confidence            56889999999999999999987754  445 789999999999887542                 2356999999999


Q ss_pred             CCCCCCCCCChHHHHHHhcCC------HHHHHHHHHcCCCCCCCCCCCC-hHHHHHHHcC-----CHHHHHHHHH-CCCC
Q 037006          386 AINGKDLHGWTALHRASFKGK------IEVVRMLIDKGIDVDAKDEDGY-TALHCAVESG-----HTDVTELLVK-KGAD  452 (541)
Q Consensus       386 ~~~~~d~~g~t~L~~Aa~~g~------~~~v~~Ll~~g~d~~~~d~~g~-tpL~~A~~~g-----~~~~v~~Ll~-~ga~  452 (541)
                      ++|.+|..|+||||+|+..|+      .+++++|+++|+|+|.+|..|+ ||||+|+..+     +.+++++|++ +|++
T Consensus        67 dvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad  146 (186)
T 3t8k_A           67 DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ  146 (186)
T ss_dssp             CSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC
T ss_pred             CCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC
Confidence            999999999999999999987      6899999999999999999999 9999999954     4579999999 9999


Q ss_pred             CcccCCCCCCHHHHHHHcCcHHHHHHHHhCCC
Q 037006          453 VEARTSKNVSPMQIAECLHYAGISRILMHGGA  484 (541)
Q Consensus       453 ~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga  484 (541)
                      ++.+|..|+||||+|+..|+.+++++|+++..
T Consensus       147 ~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          147 LLIKDKWGLTALEFVKRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             TTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999997644

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=4.2e-26  Score=199.74  Aligned_cols=142  Identities=28%  Similarity=0.322  Sum_probs=90.2

Q ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCch-HHHH
Q 037006          168 SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWG-PIHL  246 (541)
Q Consensus       168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t-~L~~  246 (541)
                      ..+..|.||||+|+..|+.++|++|+++|++++..+.. |.||||+|+ .|+.+++++|+++|++++..+..|+| |||+
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSY-GRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSS-SCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            34566777777777777777777777777777776665 677777764 67777777777777777777777776 7777


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHH
Q 037006          247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLH  312 (541)
Q Consensus       247 Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~  312 (541)
                      |+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||.+
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~t~~~  149 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSN-HARIDAAE  149 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccC-cCcCcccc
Confidence            777777777777777777777777777777777777777777777777777666655 45555554

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=8.9e-25  Score=183.50  Aligned_cols=126  Identities=40%  Similarity=0.660  Sum_probs=117.8

Q ss_pred             CCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCC
Q 037006          339 SGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGI  418 (541)
Q Consensus       339 ~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~  418 (541)
                      +|+||||+|+..|+.                     +++++|+++|++++..+..|.||||+|+..|+.+++++|+++|+
T Consensus         1 ~g~t~L~~A~~~~~~---------------------~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~   59 (126)
T 1n0r_A            1 NGRTPLHLAARNGHL---------------------EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA   59 (126)
T ss_dssp             CCCCHHHHHHHHTCH---------------------HHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcH---------------------HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Confidence            467777777665554                     55888999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q 037006          419 DVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGAT  485 (541)
Q Consensus       419 d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~  485 (541)
                      +++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.+++++|+++||+
T Consensus        60 ~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             CCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999985

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=1.7e-24  Score=184.77  Aligned_cols=115  Identities=35%  Similarity=0.502  Sum_probs=108.4

Q ss_pred             HhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHH
Q 037006          369 ARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVK  448 (541)
Q Consensus       369 ~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  448 (541)
                      +..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus        22 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~  101 (136)
T 2jab_A           22 ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK  101 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            34444566888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCC
Q 037006          449 KGADVEARTSKNVSPMQIAECLHYAGISRILMHGG  483 (541)
Q Consensus       449 ~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~g  483 (541)
                      +|++++.+|..|+|||++|+..|+.+++++|+++|
T Consensus       102 ~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          102 HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999886

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=2.5e-24  Score=180.76  Aligned_cols=126  Identities=44%  Similarity=0.642  Sum_probs=89.1

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcC
Q 037006          172 QGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGG  251 (541)
Q Consensus       172 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g  251 (541)
                      +|.||||+|+..|+.+++++|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCC-CCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence            3667777777777777777777777777666555 667777777777777777777777777766666777777777777


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCC
Q 037006          252 HLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGAR  298 (541)
Q Consensus       252 ~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  298 (541)
                      +.+++++|+++|++++..|..|.|||++|+..|+.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            77777777777777776666677777777777777777777766654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=1.6e-24  Score=184.93  Aligned_cols=126  Identities=33%  Similarity=0.423  Sum_probs=96.7

Q ss_pred             CCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHh
Q 037006          170 DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALR  249 (541)
Q Consensus       170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~  249 (541)
                      ...+.||||+||..|+.++|++|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEY-GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            455778888888888888888888888877777665 7778888777777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCC
Q 037006          250 GGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANG  296 (541)
Q Consensus       250 ~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g  296 (541)
                      .|+.+++++|+++|++++..|.+|.|||++|+..|+.+++++|+++|
T Consensus        90 ~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            77777777777777777777777777777777777777777777764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=2.3e-25  Score=190.42  Aligned_cols=134  Identities=25%  Similarity=0.408  Sum_probs=116.9

Q ss_pred             CCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHH
Q 037006          330 GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEV  409 (541)
Q Consensus       330 g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~  409 (541)
                      |+|+ .+|..|.||||+|+..|+.+                     ++++|+++|++++.+|..|+||||+|+..|+.++
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~---------------------~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   58 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIP---------------------SVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKV   58 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHH---------------------HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHH---------------------HHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHH
Confidence            5677 68899999999988766654                     4788999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q 037006          410 VRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGAT  485 (541)
Q Consensus       410 v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~  485 (541)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..+..+++++|.+.+..
T Consensus        59 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           59 VELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             HHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             HHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999888876543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.90  E-value=3.1e-25  Score=199.71  Aligned_cols=140  Identities=27%  Similarity=0.328  Sum_probs=111.5

Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHc
Q 037006          238 TSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASL  317 (541)
Q Consensus       238 ~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  317 (541)
                      ..|.||||+|+..|+.+++++|++ |++++..|..|+||||+|+..|+.+++++|+++|++++..+...|.||||+|+..
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  120 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  120 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence            456788888888888888888888 8888888888888888888888888888888888888877767788888888888


Q ss_pred             CCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChH
Q 037006          318 GYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTA  397 (541)
Q Consensus       318 g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~  397 (541)
                      |+.+++++|+++|++++.+|..|.||+|+|++.++                                      ...+.++
T Consensus       121 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~--------------------------------------~~~~~~~  162 (183)
T 3deo_A          121 VRPEVVEALVELGADIEVEDERGLTALELAREILK--------------------------------------TTPKGNP  162 (183)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH--------------------------------------TCCCCSH
T ss_pred             CcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc--------------------------------------CcccccH
Confidence            88888888888888888888888888888875332                                      1335577


Q ss_pred             HHHHHhcCCHHHHHHHHHc
Q 037006          398 LHRASFKGKIEVVRMLIDK  416 (541)
Q Consensus       398 L~~Aa~~g~~~~v~~Ll~~  416 (541)
                      |++|+..|+.+++++|.++
T Consensus       163 l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          163 MQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCHHHHHHHHHHh
Confidence            7777777777777777654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=1.6e-23  Score=188.42  Aligned_cols=139  Identities=24%  Similarity=0.277  Sum_probs=110.6

Q ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCchHHHHHHh
Q 037006          171 AQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSE-TSTWGPIHLALR  249 (541)
Q Consensus       171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~~~~t~L~~Aa~  249 (541)
                      ..|.||||+|+..|+.+++++|++ |++++..+.. |.||||+|+..|+.+++++|+++|++++..+ ..|+||||+|+.
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            456788888888888888888888 7777777765 7888888888888888888888888887777 778888888888


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 037006          250 GGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQK  329 (541)
Q Consensus       250 ~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  329 (541)
                      .|+.+++++|+++|++++..|..|.||||+|+..++.                  ..+.++|++|+..|+.+++++|.++
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            8888888888888888888888888888888764432                  3467888888888888888888754

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=2.2e-23  Score=174.42  Aligned_cols=116  Identities=24%  Similarity=0.373  Sum_probs=101.0

Q ss_pred             ccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHc
Q 037006          337 NKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDK  416 (541)
Q Consensus       337 ~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~  416 (541)
                      +..|.||||+|+..|+                     .+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus         4 ~~~~~~~l~~A~~~~~---------------------~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   62 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGD---------------------LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK   62 (123)
T ss_dssp             ---CHHHHHHHHHTTC---------------------HHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTT
T ss_pred             ccccchHHHHHHHcCC---------------------HHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            3456677776666555                     4558889999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcH
Q 037006          417 GIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA  473 (541)
Q Consensus       417 g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  473 (541)
                      |++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+++|...+..
T Consensus        63 g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  119 (123)
T 3aaa_C           63 GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIK  119 (123)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHH
T ss_pred             CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHH
Confidence            999999999999999999999999999999999999999999999999999443333

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=2.5e-23  Score=196.21  Aligned_cols=140  Identities=27%  Similarity=0.317  Sum_probs=110.5

Q ss_pred             CCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcC
Q 037006          239 STWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLG  318 (541)
Q Consensus       239 ~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g  318 (541)
                      .|.||||+|+..|+.+++++|++ |++++..|..|+||||+|+..|+.+++++|+++|++++..+...|.||||+|+..|
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g  122 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  122 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence            46778888888888888888888 88888888888888888888888888888888888888777667888888888888


Q ss_pred             CHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHH
Q 037006          319 YEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTAL  398 (541)
Q Consensus       319 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L  398 (541)
                      +.+++++|+++|++++..|..|.||||+|+..++                                      ...+.|||
T Consensus       123 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~--------------------------------------~~~~~~~l  164 (244)
T 3ui2_A          123 RPEVVEALVELGADIEVEDERGLTALELAREILK--------------------------------------TTPKGNPM  164 (244)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT--------------------------------------TCCCSSHH
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh--------------------------------------ccCCCCHH
Confidence            8888888888888888888888888888764211                                      23456777


Q ss_pred             HHHHhcCCHHHHHHHHHcC
Q 037006          399 HRASFKGKIEVVRMLIDKG  417 (541)
Q Consensus       399 ~~Aa~~g~~~~v~~Ll~~g  417 (541)
                      |+|+..|+.+++++|++++
T Consensus       165 ~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          165 QFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhc
Confidence            7777777777777777653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=2.6e-23  Score=196.06  Aligned_cols=142  Identities=23%  Similarity=0.260  Sum_probs=120.7

Q ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCchHHHHHHh
Q 037006          171 AQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSE-TSTWGPIHLALR  249 (541)
Q Consensus       171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~~~~t~L~~Aa~  249 (541)
                      ..|.||||+||..|+.++|++|++ |++++..+.. |.||||+|+..|+.+++++|+++|++++..+ ..|+||||+|+.
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTT-SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCC-CCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            457788888888888888888888 8888887776 8889999988889999999998888888877 778899999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 037006          250 GGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQK  329 (541)
Q Consensus       250 ~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  329 (541)
                      .|+.+++++|+++|++++..|..|.||||+|+..++.                  ..+.|||++|+..|+.+++++|++.
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~------------------~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT------------------CCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc------------------cCCCCHHHHHHHcChHHHHHHHHHh
Confidence            9999999999999999999999999999999863221                  4578999999999999999999986


Q ss_pred             CCC
Q 037006          330 GAN  332 (541)
Q Consensus       330 g~~  332 (541)
                      +.+
T Consensus       183 ~~~  185 (244)
T 3ui2_A          183 VFE  185 (244)
T ss_dssp             HEE
T ss_pred             ccc
Confidence            544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=2.6e-23  Score=177.64  Aligned_cols=123  Identities=27%  Similarity=0.300  Sum_probs=69.7

Q ss_pred             CCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHH
Q 037006          235 RSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHIT  314 (541)
Q Consensus       235 ~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  314 (541)
                      .++..|+||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A   83 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG-YQNDSPLHDA   83 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-GGGCCHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcC-CCCCCHHHHH
Confidence            344555555555555555555555555555555555555555555555555555555555555555544 4455555555


Q ss_pred             HHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHH
Q 037006          315 ASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDA  358 (541)
Q Consensus       315 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~  358 (541)
                      +..|+.+++++|+++|++++..|..|.||+++|+..+..+++.+
T Consensus        84 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~  127 (137)
T 3c5r_A           84 AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLL  127 (137)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSC
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhh
Confidence            55555555555555555555555566666655555554444433

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=1.3e-23  Score=195.20  Aligned_cols=135  Identities=25%  Similarity=0.326  Sum_probs=113.1

Q ss_pred             cccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHH
Q 037006          336 RNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLID  415 (541)
Q Consensus       336 ~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~  415 (541)
                      .+..|.||||+|+..|+.                     +++++|++.|++++.+|..|+||||+|+..|+.++|++|++
T Consensus        69 ~~~~g~t~L~~A~~~g~~---------------------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  127 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNL---------------------SWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFT  127 (222)
T ss_dssp             HEEEESCHHHHHHHHTCH---------------------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTT
T ss_pred             cccccccccccccccCcH---------------------HHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHc
Confidence            456778888877766655                     55888999999999999999999999999999999999999


Q ss_pred             c-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCCcc
Q 037006          416 K-GIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQ  491 (541)
Q Consensus       416 ~-g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~~~~~  491 (541)
                      . |++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..+..++++.|++.|+.....+.
T Consensus       128 ~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~  204 (222)
T 3ehr_A          128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNA  204 (222)
T ss_dssp             STTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC--------------
T ss_pred             CCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccch
Confidence            9 999999999999999999999999999999999999999999999999999999999999999999998654443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.89  E-value=3.1e-23  Score=201.50  Aligned_cols=141  Identities=19%  Similarity=0.221  Sum_probs=110.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCccc------cccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHH
Q 037006          309 TPLHITASLGYEQMVKLLLQKGANKYI------RNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIE  382 (541)
Q Consensus       309 t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~  382 (541)
                      ++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..++                  .++.+++++|++
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~------------------~~~~~iv~~Ll~  214 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVAN------------------QASLPLVDFIIQ  214 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCC------------------TTTHHHHHHHHH
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcc------------------cCcHHHHHHHHh
Confidence            455566666666666666666665554      46777888887776532                  245577999999


Q ss_pred             cCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCC
Q 037006          383 AGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVS  462 (541)
Q Consensus       383 ~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t  462 (541)
                      +|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++      .|.|
T Consensus       215 ~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~t  288 (301)
T 2b0o_E          215 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAF  288 (301)
T ss_dssp             HSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSS
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999886      5789


Q ss_pred             HHHHHHHcCcH
Q 037006          463 PMQIAECLHYA  473 (541)
Q Consensus       463 ~l~~A~~~~~~  473 (541)
                      |||+|+.+|+.
T Consensus       289 pLh~A~~~g~~  299 (301)
T 2b0o_E          289 PLHVDYSWVIS  299 (301)
T ss_dssp             CCC--------
T ss_pred             hhHHHHhcCCc
Confidence            99999998864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=6.7e-22  Score=189.85  Aligned_cols=122  Identities=21%  Similarity=0.332  Sum_probs=112.4

Q ss_pred             hHHHHhhCCHHHHHHHHHcCCCC------CCCCCCCChHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCChHHHHHH
Q 037006          365 LCVAARKGEVRTMQRLIEAGAAI------NGKDLHGWTALHRASFK---GKIEVVRMLIDKGIDVDAKDEDGYTALHCAV  435 (541)
Q Consensus       365 l~~a~~~~~~~~~~~Ll~~g~~~------~~~d~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~  435 (541)
                      +..|+..|+.+.++.+++.|+++      +..+..|+||||+|+..   |+.+++++|+++|+++|.+|..|+||||+|+
T Consensus       134 l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~  213 (278)
T 1dcq_A          134 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC  213 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHH
T ss_pred             hhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHH
Confidence            55666777777788888988884      44578899999999999   8999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCC
Q 037006          436 ESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATK  486 (541)
Q Consensus       436 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~  486 (541)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       214 ~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          214 LTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999999999999999999864

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=1e-22  Score=170.39  Aligned_cols=112  Identities=28%  Similarity=0.320  Sum_probs=79.6

Q ss_pred             CCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHh
Q 037006          170 DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALR  249 (541)
Q Consensus       170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~  249 (541)
                      +..|.||||+|+..|+.++|++|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++..+..|+||||+|+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEG-GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTT-SSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            456677777777777777777777777777766655 6777777777777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHH
Q 037006          250 GGHLEVLKLLLIKGANVNALTKDGNTALHLAVE  282 (541)
Q Consensus       250 ~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~  282 (541)
                      .|+.+++++|+++|++++..|..|.|||++|..
T Consensus        83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            777777777777777777777777777777643

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=2.6e-22  Score=158.87  Aligned_cols=93  Identities=39%  Similarity=0.660  Sum_probs=89.5

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCc
Q 037006          393 HGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHY  472 (541)
Q Consensus       393 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  472 (541)
                      +|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCC
Q 037006          473 AGISRILMHGGAT  485 (541)
Q Consensus       473 ~~i~~~Ll~~ga~  485 (541)
                      .+++++|+++||+
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999985

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=6.5e-23  Score=190.57  Aligned_cols=133  Identities=24%  Similarity=0.297  Sum_probs=82.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHc-CC
Q 037006          307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEA-GA  385 (541)
Q Consensus       307 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~-g~  385 (541)
                      |.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.+                     ++++|+++ |+
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~---------------------~v~~Ll~~~g~  131 (222)
T 3ehr_A           73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD---------------------IVEMLFTQPNI  131 (222)
T ss_dssp             ESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH---------------------HHHHHTTSTTC
T ss_pred             cccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHH---------------------HHHHHHcCCCC
Confidence            445555555555555555555555555555555555555554444433                     24445555 66


Q ss_pred             CCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCC
Q 037006          386 AINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKN  460 (541)
Q Consensus       386 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g  460 (541)
                      +++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++.|++.|+..+..+..|
T Consensus       132 ~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             CCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            777778888888999999999999999999999999999999999999999999999999999988887766554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=2.3e-22  Score=195.38  Aligned_cols=140  Identities=26%  Similarity=0.264  Sum_probs=124.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCchHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCChHH
Q 037006          207 CSTPLEAAAAAGEALIVELLLARKASTER------SETSTWGPIHLALRG---GHLEVLKLLLIKGANVNALTKDGNTAL  277 (541)
Q Consensus       207 ~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~------~~~~~~t~L~~Aa~~---g~~~iv~~Ll~~g~~~~~~d~~g~t~L  277 (541)
                      ..++|+.|+..|+.+.++.|++.|++++.      .+..|+||||+|+..   |+.+++++|+++|++++..|.+|+|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            45789999999999999999999999987      688999999999997   899999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCH
Q 037006          278 HLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHS  353 (541)
Q Consensus       278 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~  353 (541)
                      |+|+..|+.+++++|+++|++++..+ ..|.|||++|+..|+.+++++|++.|++      .|.||||+|+..|+.
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d-~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVN-EAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCC-TTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            99999999999999999999999888 7899999999999999999999999876      589999999998874

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=9.8e-22  Score=188.72  Aligned_cols=128  Identities=17%  Similarity=0.191  Sum_probs=112.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCc------cccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHH
Q 037006          308 DTPLHITASLGYEQMVKLLLQKGANK------YIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLI  381 (541)
Q Consensus       308 ~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll  381 (541)
                      .++|+.|+..|+.+.+..+++.|+++      +..+..|.||||+|+..|+                  .|+.+++++|+
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~------------------~~~~~~v~~Ll  192 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVD------------------RTSLHIVDFLV  192 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCC------------------TTTHHHHHHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcc------------------cchHHHHHHHH
Confidence            46788888888888888888888874      3447889999999987632                  14456689999


Q ss_pred             HcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Q 037006          382 EAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADV  453 (541)
Q Consensus       382 ~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~  453 (541)
                      ++|+++|.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       193 ~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          193 QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999863

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=3.5e-21  Score=191.30  Aligned_cols=144  Identities=21%  Similarity=0.273  Sum_probs=92.8

Q ss_pred             CCCcHHHHHHHc-CCHHHHHHHHHcCCCccccc--cCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHH
Q 037006          306 DGDTPLHITASL-GYEQMVKLLLQKGANKYIRN--KSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIE  382 (541)
Q Consensus       306 ~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~  382 (541)
                      .+.|+||.|+.. |+.+++++|++.|++++..+  ..|.||||+|+..|+.                     +++++|++
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~---------------------~iv~~LL~  256 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSL---------------------LACEFLLQ  256 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCH---------------------HHHHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCH---------------------HHHHHHHH
Confidence            345677777777 77777777777777777666  6677777766655444                     33666777


Q ss_pred             cCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCC---CCCcccCCC
Q 037006          383 AGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKG---ADVEARTSK  459 (541)
Q Consensus       383 ~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g---a~~~~~~~~  459 (541)
                      +|+++|..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|   ++....+..
T Consensus       257 ~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~  336 (368)
T 3jue_A          257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAG  336 (368)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCC
Confidence            77777777778888888888888888888888888888888888888888888888888888888765   333344556


Q ss_pred             CCCHHHHHHHc
Q 037006          460 NVSPMQIAECL  470 (541)
Q Consensus       460 g~t~l~~A~~~  470 (541)
                      +.|+++++...
T Consensus       337 ~~t~l~i~~~~  347 (368)
T 3jue_A          337 DETYLDIFRDF  347 (368)
T ss_dssp             -----------
T ss_pred             CCCHHHHHHHH
Confidence            67777766544

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=5.7e-21  Score=189.75  Aligned_cols=146  Identities=27%  Similarity=0.321  Sum_probs=102.4

Q ss_pred             CCCccHHHHHHHc-CCHHHHHHHHhcCCCCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHH
Q 037006          171 AQGQTLLHIAIAQ-RRPDIVQLLLEFGPDVESQGR-CGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLAL  248 (541)
Q Consensus       171 ~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~~-~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa  248 (541)
                      ..+.|+||+|+.. |+.++|++|++.|++++..+. ..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~  276 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT  276 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            3456788888888 888888888888888887762 33788888888888888888888888888888888888888888


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCc--cCCCCCCcHHHHHHH
Q 037006          249 RGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDI--RNARDGDTPLHITAS  316 (541)
Q Consensus       249 ~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~~g~t~L~~A~~  316 (541)
                      ..|+.+++++|+++|++++..|.+|.||||+|+..|+.+++++|++.+.....  .....+.|+++++..
T Consensus       277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence            88888888888888888888888888888888888888888888876533221  111345566655444

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=4.8e-21  Score=158.08  Aligned_cols=108  Identities=34%  Similarity=0.485  Sum_probs=99.8

Q ss_pred             CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHH
Q 037006          389 GKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE  468 (541)
Q Consensus       389 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  468 (541)
                      .+|.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHhCCCCCCCCcccccch
Q 037006          469 CLHYAGISRILMHGGATKDGIQQTNLRQ  496 (541)
Q Consensus       469 ~~~~~~i~~~Ll~~ga~~~~~~~~~~~~  496 (541)
                      ..++.+++++|+++|++++.....+.++
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            9999999999999999987665555443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.83  E-value=5.8e-20  Score=145.25  Aligned_cols=91  Identities=46%  Similarity=0.659  Sum_probs=47.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCH
Q 037006          207 CSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR  286 (541)
Q Consensus       207 ~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~  286 (541)
                      |.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHCCC
Q 037006          287 DCARLLLANGA  297 (541)
Q Consensus       287 ~~v~~Ll~~g~  297 (541)
                      +++++|+++|+
T Consensus        82 ~~~~~Ll~~ga   92 (93)
T 1n0q_A           82 EVVKLLLEAGA   92 (93)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHcCC
Confidence            55555555544

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=1.1e-20  Score=155.88  Aligned_cols=109  Identities=38%  Similarity=0.586  Sum_probs=99.3

Q ss_pred             ccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHH
Q 037006          335 IRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI  414 (541)
Q Consensus       335 ~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll  414 (541)
                      .+|..|+||||+|+..|+.+                     ++++|+++|++++..|..|+||||+|+..|+.+++++|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~---------------------~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll   62 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAE---------------------EVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL   62 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHH---------------------HHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHcCCHH---------------------HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            46788999999888766654                     578889999999999999999999999999999999999


Q ss_pred             HcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHH
Q 037006          415 DKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPM  464 (541)
Q Consensus       415 ~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l  464 (541)
                      ++|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.+|-
T Consensus        63 ~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999999999999999999999999999999999874

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=7.4e-19  Score=143.57  Aligned_cols=93  Identities=32%  Similarity=0.402  Sum_probs=86.6

Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHH
Q 037006          387 INGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQI  466 (541)
Q Consensus       387 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  466 (541)
                      +...+.+|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence            34467889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHH
Q 037006          467 AECLHYAGISRIL  479 (541)
Q Consensus       467 A~~~~~~~i~~~L  479 (541)
                      |+..|+.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            9999999999987

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=7.5e-17  Score=131.54  Aligned_cols=92  Identities=24%  Similarity=0.316  Sum_probs=68.3

Q ss_pred             CCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHH
Q 037006          167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHL  246 (541)
Q Consensus       167 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~  246 (541)
                      ...|.+|.|+||+|+..|+.+++++|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++..+..|+||||+
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~-g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence            445677888888888888888888888888887777655 7777777777777777777777777777777777777777


Q ss_pred             HHhcCCHHHHHHH
Q 037006          247 ALRGGHLEVLKLL  259 (541)
Q Consensus       247 Aa~~g~~~iv~~L  259 (541)
                      |+..|+.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            7777777777765

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.48  E-value=1.1e-13  Score=117.51  Aligned_cols=122  Identities=23%  Similarity=0.441  Sum_probs=94.4

Q ss_pred             CCcccccCCCCeEEEEecCCCcccceEEEeecccccceeEEEeecCCcceeecCCCccccCCccceeeeeecCCCCCCCC
Q 037006            1 MDRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLP   80 (541)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~p   80 (541)
                      ++++|+++|.+++.|.++.+++|++.|+|+|.+.. +|||||+||+|.||.|+|+.|+|.|.++..+.+.  +++....|
T Consensus        11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~-~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~--l~~~~~~p   87 (147)
T 2cri_A           11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDR-KVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVM--LQPFDYDP   87 (147)
T ss_dssp             CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSS-CEEEEEEESCTTSEEEESSEEECCTTCEEEEEEE--ECCCCCCT
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCC-cEEEEEECCCCccEEEcCCCcEECCCCeEEEEEE--ECCCcCCc
Confidence            57899999988999999999999999999998875 8999999999999999999999999999999998  45443333


Q ss_pred             CCCCCCCcceeeeecccCCCCCCCCCCCCCCCCCccccccchhhhhhcCCceeecC
Q 037006           81 DSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTRKKQVFIDSGIKIMFVG  136 (541)
Q Consensus        81 ~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  136 (541)
                      .  ..+.|.|++.++.++...        ..+...|. ....+.+.++.+++.|..
T Consensus        88 ~--~~~kDKFlVqs~~~~~~~--------~d~~~~wk-~~~~~~i~e~kLrv~f~~  132 (147)
T 2cri_A           88 N--EKSKHKFMVQTIFAPPNI--------SDMEAVWK-EAKPDELMDSKLRCVFEM  132 (147)
T ss_dssp             T--CCSCCCEEEEEEECCTTC--------CCHHHHHH-HSCTTTCEEEEEEEEEEC
T ss_pred             c--ccCCCEEEEEEEEcCCCc--------ccHHHHhh-cCCCCceEEEEEEEEEec
Confidence            2  367899999998887522        12333343 333344456666776643

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A

Probab=99.46  E-value=1.8e-13  Score=113.49  Aligned_cols=93  Identities=24%  Similarity=0.489  Sum_probs=81.2

Q ss_pred             CcccccCCCCeEEEEecCCCcccceEEEeecccccceeEEEeecCCcceeecCCCccccCCccceeeeeecCCCCCCCCC
Q 037006            2 DRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPD   81 (541)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~p~   81 (541)
                      +++|+++|.+++.|.++.++++++.|+|+|.+.. +|||||+||+|.+|.|+|+.|+|.|.++..+.+.  +++....|.
T Consensus         8 ~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~-~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~--~~~~~~~p~   84 (128)
T 1z9l_A            8 EQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDR-KVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVM--LQPFDYDPN   84 (128)
T ss_dssp             CCCSEEESSSEEEEESCCSSCEEEEEEEECCSSS-CEEEEEEESCGGGEEEESCEEEECTTCEEEEEEE--ECCCCCCTT
T ss_pred             CCeEEECCCCeEEEcCCCCceEEEEEEEECCCCC-eEEEEEECCCCCceEEeCCCcEECCCCeEEEEEE--ECcCcCCcc
Confidence            6799999988999999999999999999998875 8999999999999999999999999999999998  454433332


Q ss_pred             CCCCCCcceeeeecccCC
Q 037006           82 SFPHCDDSFLLHSVVVPG   99 (541)
Q Consensus        82 s~~~~~~~~l~~~~~~~~   99 (541)
                        ..+.|.|++.++.++.
T Consensus        85 --~~~~dkF~V~s~~~~~  100 (128)
T 1z9l_A           85 --EKSKHKFMVQTIFAPP  100 (128)
T ss_dssp             --CCCCCEEEEEEEECCT
T ss_pred             --cccCCEEEEEEEECCC
Confidence              2678999999988775

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2

Probab=99.44  E-value=1.6e-13  Score=116.63  Aligned_cols=89  Identities=21%  Similarity=0.344  Sum_probs=79.5

Q ss_pred             CcccccCCCCeEEEEecCCCcccceEEEeecccccceeEEEeecCCcceeecCCCccccCCccceeeeeecCCCCCCCCC
Q 037006            2 DRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPD   81 (541)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~p~   81 (541)
                      +++|+++|.++|.|.++.++.|++.|+|+|.+.. +|||||+||+|.+|.|+|+.|+|.|..+..+++.  |+++.+   
T Consensus        16 ~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~-~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~--lq~~~~---   89 (152)
T 1wic_A           16 GPLLHISPAEELYFGSIESGEKKTLIVLTNVTKN-IVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVS--PHGGLT---   89 (152)
T ss_dssp             CSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSS-CEEEEEEESCTTTEEEESSEEEECTTCEEEEEEE--ECSSSC---
T ss_pred             CCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCC-eEEEEEECCCCCceeecCCCcEECCCCeEEEEEE--ecCccc---
Confidence            6899999977999999999999999999998875 8999999999999999999999999999999999  444432   


Q ss_pred             CCCCCCcceeeeecccC
Q 037006           82 SFPHCDDSFLLHSVVVP   98 (541)
Q Consensus        82 s~~~~~~~~l~~~~~~~   98 (541)
                        ..+.|.|++.++.++
T Consensus        90 --~~~kDKFlVqs~~v~  104 (152)
T 1wic_A           90 --VSAQDRFLIMAAEME  104 (152)
T ss_dssp             --CCSSCCEEEEEEECC
T ss_pred             --CCCCCEEEEEEEEcC
Confidence              267899999998776

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A

Probab=99.32  E-value=4e-12  Score=104.49  Aligned_cols=106  Identities=15%  Similarity=0.317  Sum_probs=86.6

Q ss_pred             cccccCCCCeEEEEecCCCcccceEEEeecccccceeEEEeecCCcceeecCCCccccCCccceeeeeecCCCCCCCCCC
Q 037006            3 RLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDS   82 (541)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~p~s   82 (541)
                      ..|+++|.++++|.++.++..++.|+|+|.+.. +|||||+||+|.||.|+|+.|+|.|..+..+.+.  +++....|+.
T Consensus         7 ~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~-~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~--~q~~~~~~~~   83 (126)
T 1msp_A            7 GDINTQPSQKIVFNAPYDDKHTYHIKITNAGGR-RIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVS--CDTFNAATED   83 (126)
T ss_dssp             CCEEEESSSCEEEESCCSSCCCEEEEEEECSSS-CEEEEEEESCTTTEEEESCEEEECTTCEEEEEEE--ECCCCGGGSC
T ss_pred             CeEEEcCCCeEEEcCcCCcceEEEEEEECCCCC-eEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEE--ecCCCCCCCc
Confidence            368899988999999999999999999998876 8999999999999999999999999999999988  5554443432


Q ss_pred             CCCCCcceeeeecccCCCCCCCCCCCCCCCCCcccccc
Q 037006           83 FPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTR  120 (541)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (541)
                      .  ..|.|++.++.++....       ..+...||...
T Consensus        84 ~--~kDKf~Vq~~~~p~~~~-------~~~~~~wf~~d  112 (126)
T 1msp_A           84 L--NNDRITIEWTNTPDGAA-------KQFRREWFQGD  112 (126)
T ss_dssp             C--SSCEEEEEEEECCTTCC-------SSCCTHHHHSS
T ss_pred             c--CCCEEEEEEEECCCCcc-------hhhhHHhhcCC
Confidence            2  38899999988874431       34667788654

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.08  E-value=1.8e-10  Score=91.28  Aligned_cols=82  Identities=21%  Similarity=0.376  Sum_probs=69.0

Q ss_pred             cccCCCCeEEEEecCCCcccceEEEeecccccceeEEEeecCCcceeecCCCccccCCccceeeeeecCCCCCCCCCCCC
Q 037006            5 VSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDSFP   84 (541)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~p~s~~   84 (541)
                      |+++| .|+.|.++.|   +++++|+|.+.. +|||||++|++.+|+|+|..|+|.|..+..+.+.+  +++       +
T Consensus         3 L~i~P-~~l~F~~~~~---~~~l~L~N~t~~-~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~--q~~-------~   68 (109)
T 1row_A            3 LTADP-PACTVPAAGV---SSTHKLVNGGAE-KIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR--TAG-------A   68 (109)
T ss_dssp             CEEES-SSEEEETTCE---EEEEEEEECSSS-CEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE--CSC-------C
T ss_pred             EEEEC-CEeEEeCCCC---eEEEEEEcCCCC-eEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEe--CCC-------C
Confidence            68999 6688888733   489999998886 89999999999999999999999999999999884  332       2


Q ss_pred             CCCcceeeeecccCCC
Q 037006           85 HCDDSFLLHSVVVPGA  100 (541)
Q Consensus        85 ~~~~~~l~~~~~~~~~  100 (541)
                      .+.|.|++.++..++.
T Consensus        69 ~~~dKflvq~~~~~~~   84 (109)
T 1row_A           69 PKEDKLVVHFASAPAD   84 (109)
T ss_dssp             CEEEEEEEEEEECCTT
T ss_pred             CCCCEEEEEEEECCCC
Confidence            4688999998877644

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.05  E-value=3e-10  Score=90.30  Aligned_cols=83  Identities=19%  Similarity=0.452  Sum_probs=70.5

Q ss_pred             ccccCCCCeEEEEecCCCcccceEEEeecccccceeEEEeecCCcceeecCCCccccCCccceeeeeecCCCCCCCCCCC
Q 037006            4 LVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDSF   83 (541)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~p~s~   83 (541)
                      .+.++| .++.|.++.|   +++++|+|.+.. +|||||++|++.+|+|+|..|+|.|..+..+++.+  +++       
T Consensus        10 ~~~~~p-~~l~F~~~gg---~~~l~L~N~t~~-~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~--q~~-------   75 (116)
T 1m1s_A           10 MINVDP-PTGNYPATGG---NSTHNITSESDS-RLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR--LPG-------   75 (116)
T ss_dssp             SEEEES-SEEEECTTCE---EEEEEEEECSSS-EEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE--CSC-------
T ss_pred             eeecCC-CeEEEecCCC---EEEEEEECCCCC-eEEEEEEecCCCceEEcCCceEECCCCeEEEEEEe--CCC-------
Confidence            467788 8999999943   589999998886 89999999999999999999999999999999884  443       


Q ss_pred             CCCCcceeeeecccCCC
Q 037006           84 PHCDDSFLLHSVVVPGA  100 (541)
Q Consensus        84 ~~~~~~~l~~~~~~~~~  100 (541)
                      +.+.|.|++.++.++..
T Consensus        76 ~~k~DKflVq~~~~~~d   92 (116)
T 1m1s_A           76 PPKEDKIVIQYAEVPAE   92 (116)
T ss_dssp             CSCEEEEEEEEEEECTT
T ss_pred             CCCCCEEEEEEEECCCC
Confidence            24588999998877643

>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}

Probab=89.17  E-value=1.1  Score=36.77  Aligned_cols=66  Identities=17%  Similarity=0.283  Sum_probs=49.0

Q ss_pred             ccCCCCeEEEE-ecCCCcccceEEEeecccccceeEEEeec------CCcceeecCCCccccCCccceeeeeecC
Q 037006            6 SLEPSNLVAIR-IEPGQKCSGELTLRNVMHTMPVAFRIQPT------NKARYTVKPQSGIISPLATLSVEIAYHL   73 (541)
Q Consensus         6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~p~~~~~~p~~~~~~~~~~~~   73 (541)
                      .+++ ++|-|- ...++..+-+|+|+|-.. .|.-|+..+.      .+.-+++.|..|.|.|..+..+++...+
T Consensus        28 ~v~~-~~ldFG~v~~~~~~~~~l~I~Ntg~-vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v  100 (140)
T 3qbt_B           28 ELSR-REFVFENVKFRQLQKEKFQISNNGQ-VPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV  100 (140)
T ss_dssp             EESC-CEEEEEEECBTCCEEEEEEEEECSS-SCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred             Eeee-eeEEeeeceeeeeeeeEEEEEcCCc-cceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence            4444 444432 345677788999999554 5999999874      2344889999999999999999988654

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.57  E-value=0.81  Score=36.57  Aligned_cols=51  Identities=16%  Similarity=0.352  Sum_probs=43.7

Q ss_pred             CCCcccceEEEeecccccceeEEEeecCCcceeecCCCccccCCccceeeeeec
Q 037006           19 PGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYH   72 (541)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~~   72 (541)
                      .|++-..+|.|+|... .++-|+.++..  -|++.|.+|.+.|..+..+++.++
T Consensus        39 v~~~~~~~~~l~N~g~-~~~~f~~~~~~--~F~i~P~~g~L~pg~~~~i~V~F~   89 (122)
T 2ys4_A           39 VKYSTQKILLVRNIGN-KNAVFHIKTCR--PFSIEPAIGTLNVGESMQLEVEFE   89 (122)
T ss_dssp             SSSCEEEEEEEECCSS-SCEEEEEECCT--TEEEESSEEEECTTCEEEEEEEEC
T ss_pred             cCCeEEEEEEEEECCC-CCEEEEEecCC--CeEEECCcCEECCCCEEEEEEEEE
Confidence            4777788999999555 69999999865  599999999999999999999853

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=84.52  E-value=2.1  Score=41.55  Aligned_cols=68  Identities=15%  Similarity=0.263  Sum_probs=52.7

Q ss_pred             cccCCCCeEEE-EecCCCcccceEEEeecccccceeEEEeecCCcc------eeecCCCccccCCccceeeeeecCC
Q 037006            5 VSLEPSNLVAI-RIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKAR------YTVKPQSGIISPLATLSVEIAYHLP   74 (541)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~p~~~~~~p~~~~~~~~~~~~~   74 (541)
                      |.+++ ++|.| .+..+++.+-+|+|+|-.+. |.-|+..+.....      ++++|..|.+.|..+..+++.....
T Consensus        30 v~v~~-~~idFg~v~~~~~~~~~l~i~N~g~~-pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~  104 (366)
T 3qis_A           30 LELSR-REFVFENVKFRQLQKEKFQISNNGQV-PCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVS  104 (366)
T ss_dssp             EEESC-SEEEEEEECBTCCEEEEEEEEECSSS-CEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBC
T ss_pred             EEEec-CeEEeeeeeeCCeEEEEEEEEecCCc-eEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEEC
Confidence            45665 66655 35778999999999996555 9999998753221      6799999999999999999886543

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.99  E-value=2.3  Score=33.07  Aligned_cols=54  Identities=24%  Similarity=0.424  Sum_probs=44.0

Q ss_pred             cCCCcccceEEEeecccccceeEEEeecCC---cceeecCCCccccCCccceeeeeec
Q 037006           18 EPGQKCSGELTLRNVMHTMPVAFRIQPTNK---ARYTVKPQSGIISPLATLSVEIAYH   72 (541)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~p~~~~~~~~~~~   72 (541)
                      ..|+.-..+|+|+|... .|.-|+..+...   .-|++.|..|.|.|..+..+++.|.
T Consensus        23 ~~g~~~~~~~~l~N~g~-~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~   79 (112)
T 2e6j_A           23 FTGSAHCYEAILYNKGS-IDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFS   79 (112)
T ss_dssp             ESSCCEEEEEEEEECCS-SCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEEC
T ss_pred             EECCEEEEEEEEEECCc-ceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEE
Confidence            34777677999999666 599999976432   4599999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	541
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-51
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-48
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-45
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-51
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-25
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-23
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-37
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-33
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-23
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-33
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-27
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-26
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-17
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-32
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-25
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-31
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-24
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-30
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-27
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-18
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-30
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-29
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-27
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-21
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-26
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-22
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-17
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-25
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-23
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-16
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-15
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-13
d1wica_	152	b.1.11.2 (A:) MSP domain containing protein 2, Mos	1e-18
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-18
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-04
d1grwa_	124	b.1.11.2 (A:) Major sperm protein, MSP {Nematode (	9e-17
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-15
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-10
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.004
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-14
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-14
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-14
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-04
d1m1sa_	109	b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan	3e-11
d1rowa_	107	b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele	3e-10
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-09
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	5e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	6e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	8e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.004
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	7e-05
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	8e-05

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  179 bits (455), Expect = 1e-51
 Identities = 106/386 (27%), Positives = 175/386 (45%), Gaps = 53/386 (13%)

Query: 140 LVLLVKDGEMDDLREVLER-SDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPD 198
           L +    G +  ++ +L+R + P     + ++ + +T LH+A      ++ + LL+    
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASP-----NVSNVKVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 199 VESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKL 258
           V ++ +    TPL  AA  G   +V+LLL   A+   + T+   P+H+A R GH+E +  
Sbjct: 59  VNAKAKDDQ-TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 117

Query: 259 LLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLG 318
           LL K A+   +TK G T LH+A +  +   A LLL   A P+    ++G TPLH+     
Sbjct: 118 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG-KNGLTPLHVAVHHN 176

Query: 319 YEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL-----------KLGDS-LC 366
              +VKLLL +G + +    +G T   +AA+     +  +L             G + L 
Sbjct: 177 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 236

Query: 367 VAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDED 426
           +AA++G    +  L+   A  N  +  G T LH  + +G + V  +LI  G+ VDA    
Sbjct: 237 LAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 296

Query: 427 GYTA---------------------------------LHCAVESGHTDVTELLVKKGADV 453
           GYT                                  LH A + GHTD+  LL+K GA  
Sbjct: 297 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 356

Query: 454 EARTSKNVSPMQIAECLHYAGISRIL 479
              +S   +P+ IA+ L Y  ++ +L
Sbjct: 357 NEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  170 bits (430), Expect = 4e-48
 Identities = 95/352 (26%), Positives = 155/352 (44%), Gaps = 51/352 (14%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGC------------------- 207
           ++     QT LH A      ++V+LLLE   +       G                    
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 208 -------------STPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLE 254
                         TPL  AA  G+  + ELLL R A    +  +   P+H+A+   +L+
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 179

Query: 255 VLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHIT 314
           ++KLLL +G + ++   +G T LH+A +  + + AR LL  G   +  +   G TPLH+ 
Sbjct: 180 IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES-VQGVTPLHLA 238

Query: 315 ASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL------------KLG 362
           A  G+ +MV LLL K AN  + NKSG T   + A+ GH  + D L               
Sbjct: 239 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY 298

Query: 363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
             L VA+  G ++ ++ L++  A +N K   G++ LH+A+ +G  ++V +L+  G   + 
Sbjct: 299 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 358

Query: 423 KDEDGYTALHCAVESGHTDVTELL---VKKGADVEARTSKNVSPMQIAECLH 471
              DG T L  A   G+  VT++L     + + V      +   M   E + 
Sbjct: 359 VSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLV---SDKHRMSFPETVD 407

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  162 bits (411), Expect = 2e-45
 Identities = 87/313 (27%), Positives = 137/313 (43%), Gaps = 23/313 (7%)

Query: 175 TLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTE 234
           T LH+A       IV+ LL+ G            TPL  AA AG   + + LL  KA   
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 235 RSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLA 294
                   P+H A R GH  ++KLLL   AN N  T  G+T LH+A  +   +    LL 
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
             A       + G TPLH+ A  G  ++ +LLL++ A+     K+G T            
Sbjct: 121 KEASQACMT-KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTP----------- 168

Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI 414
                     L VA     +  ++ L+  G + +    +G+T LH A+ + ++EV R L+
Sbjct: 169 ----------LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 218

Query: 415 DKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAG 474
             G   +A+   G T LH A + GH ++  LL+ K A+        ++P+ +     +  
Sbjct: 219 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP 278

Query: 475 ISRILMHGGATKD 487
           ++ +L+  G   D
Sbjct: 279 VADVLIKHGVMVD 291

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 2e-09
 Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 2/106 (1%)

Query: 123 QVFIDSGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIA 182
            V I  G+ +          L       +++ V +         ++    G + LH A  
Sbjct: 281 DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV-KFLLQHQADVNAKTKLGYSPLHQAAQ 339

Query: 183 QRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLA 228
           Q   DIV LLL+ G         G  TPL  A   G   + ++L  
Sbjct: 340 QGHTDIVTLLLKNGASPNEVSSDGT-TPLAIAKRLGYISVTDVLKV 384

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  174 bits (441), Expect = 4e-51
 Identities = 87/299 (29%), Positives = 129/299 (43%), Gaps = 28/299 (9%)

Query: 169 ADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLA 228
           A  +   LL  A+     D+VQ LLE G +V  Q   G  TPL  A       IVELLL 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 229 RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDC 288
             A     + +   P  LA   G +++LKL L KGA+VN     G TA   A    +   
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 289 ARLLLANGARPDIRN---------ARDGDTPLHITASLGYEQMVKLLLQK-GANKYIRNK 338
            + L   GA  ++R           + G T L   A  G+ +++K+LL + GA+    + 
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180

Query: 339 SGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTAL 398
            G+ A   A         +A+                    L++ GA +N +   G T L
Sbjct: 181 MGRNALIHALLSSDDSDVEAI-----------------THLLLDHGADVNVRGERGKTPL 223

Query: 399 HRASFKGKIEVVRMLIDK-GIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
             A  K  + +V+ L+++  I+++  D DG TAL  AVE     + ELL K+GA  +  
Sbjct: 224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 2e-25
 Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 5/149 (3%)

Query: 160 DPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLL-EFGPDVESQ---GRCGCSTPLEAAA 215
                  +     G T L  A  +   +++++LL E G DV +    GR      L ++ 
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 194

Query: 216 AAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIK-GANVNALTKDGN 274
            +    I  LLL   A           P+ LA+   HL +++ LL +    +N    DG 
Sbjct: 195 DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 254

Query: 275 TALHLAVEDRRRDCARLLLANGARPDIRN 303
           TAL LAVE + +  A LL   GA  D  +
Sbjct: 255 TALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.1 bits (243), Expect = 2e-23
 Identities = 73/305 (23%), Positives = 115/305 (37%), Gaps = 73/305 (23%)

Query: 136 GSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEF 195
            + +L+  V++ ++D ++++LE      N     +  G T LH A+   R DIV+LLL  
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGG---ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 196 GPDVESQGRCGCS--------------------------------TPLEAAAAAGEALIV 223
           G D   + + G +                                T    AA  G+   +
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 224 ELLLARKAS----------TERSETSTWGPIHLALRGGHLEVLKLLLIK-GANVNALTKD 272
           + L  R A+           ER        +  A   GH+EVLK+LL + GA+VNA    
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181

Query: 273 GNTALHLAVEDRRRDCA----RLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLL- 327
           G  AL  A+             LLL +GA  ++R    G TPL +     +  +V+ LL 
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG-ERGKTPLILAVEKKHLGLVQRLLE 240

Query: 328 QKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAI 387
           Q+       +  GKTA  +A E                         +  + L + GA+ 
Sbjct: 241 QEHIEINDTDSDGKTALLLAVELKL---------------------KKIAELLCKRGAST 279

Query: 388 NGKDL 392
           +  DL
Sbjct: 280 DCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 3e-12
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 385 AAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD-EDGYTALHCAVESGHTDVT 443
           AA+          L +A     +++V+ L++ G +V+ ++ E G+T LH AV+    D+ 
Sbjct: 1   AAVEDN-----HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55

Query: 444 ELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG 483
           ELL++ GAD   R     +P  +A       + ++ +  G
Sbjct: 56  ELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG 95

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 5e-10
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 1/109 (0%)

Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLH-GWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
           L  A +  +V  +Q+L+E GA +N ++   GWT LH A    + ++V +L+  G D   +
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68

Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHY 472
            ++G T    A  +G   + +L + KGADV        +    A     
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  139 bits (351), Expect = 1e-37
 Identities = 44/324 (13%), Positives = 81/324 (25%), Gaps = 32/324 (9%)

Query: 143 LVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQ 202
           L +     +   ++  S            +    +   +        +   +   D   +
Sbjct: 27  LFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKK 86

Query: 203 GRCGCSTPLEAAAAAG--EAL-IVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLL 259
           G          AA  G   AL  + LLL      +  +   +    LA   GHL VL  L
Sbjct: 87  GIKS-EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL 145

Query: 260 LIKGANVNA--LTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNAR--DGDTPLHITA 315
                      +  +   A  LA E+        L            +  +         
Sbjct: 146 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV 205

Query: 316 SLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVR 375
             G+  ++  LL               A     E G   +   +          R  E+ 
Sbjct: 206 GRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEKYVNPFI-----ARHVNRLKEMH 253

Query: 376 TMQRLIEAGAAINGKD-------LHGWTALHRASFKGKIEVVRMLIDKGIDVDAK----- 423
              +L       +           +    L R + +  ++ +R L+              
Sbjct: 254 DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI 313

Query: 424 DEDGYTALHCAVESGHTDVTELLV 447
             D    L  A+  G+     LL+
Sbjct: 314 PGDANELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  128 bits (321), Expect = 2e-33
 Identities = 39/275 (14%), Positives = 69/275 (25%), Gaps = 27/275 (9%)

Query: 211 LEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGH---LEVLKLLLIKGANVN 267
           L    A       +L         +SE        +A   G    L+ L LLL     V 
Sbjct: 65  LCLYYAHYNRNAKQLWSDAHKKGIKSEV----ICFVAAITGCSSALDTLCLLLTSDEIVK 120

Query: 268 ALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARD-GDTPLHITASLGYEQMVKLL 326
            +  +   A  LA E+        L        +   +        + A  G+  ++  L
Sbjct: 121 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 180

Query: 327 LQKGANK---YIRNKSGKTAYDVAAECGHSRLFDAL-----KLGDSLCVAARKGEVRTMQ 378
            +    +    I+ ++       A   GH  + + L      L  +       GE     
Sbjct: 181 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP 240

Query: 379 RLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESG 438
            +         +      A   ++  G  ++V            +       L    +  
Sbjct: 241 FIARHVN----RLKEMHDAFKLSNPDGVFDLV------TKSECLQGFYMLRNLIRRNDEV 290

Query: 439 HTDVTELLVKKGADVEARTSKNVSPMQIAECLHYA 473
             D    L+               P    E L  A
Sbjct: 291 LLDDIRFLLSIPGIKAL-APTATIPGDANELLRLA 324

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 98.4 bits (244), Expect = 4e-23
 Identities = 30/219 (13%), Positives = 59/219 (26%), Gaps = 17/219 (7%)

Query: 265 NVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVK 324
           N+     D    L L       +  +  ++      +  +      + +  +   EQ+ +
Sbjct: 6   NIENYEND--PQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQ 63

Query: 325 LLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKG---EVRTMQRLI 381
           LL    A+     K   +                        VAA  G    + T+  L+
Sbjct: 64  LLCLYYAHYNRNAKQLWSDAHKKGIKSEV----------ICFVAAITGCSSALDTLCLLL 113

Query: 382 EAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDED--GYTALHCAVESGH 439
            +   +       + A   A+  G + V+  L +              Y A   A E+GH
Sbjct: 114 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 173

Query: 440 TDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRI 478
             V   L +          +  +           G   +
Sbjct: 174 LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV 212

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 88.0 bits (217), Expect = 1e-19
 Identities = 22/194 (11%), Positives = 56/194 (28%), Gaps = 16/194 (8%)

Query: 306 DGDTPLHITASLGYEQMVKLLLQK-GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDS 364
           + D  L +   + +E + +  +     +    +        +       ++   L L  +
Sbjct: 11  ENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYA 70

Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKG---KIEVVRMLIDKGIDVD 421
                        +   +  +  + K +        A+  G    ++ + +L+     V 
Sbjct: 71  HYN----------RNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK 120

Query: 422 AKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR--TSKNVSPMQIAECLHYAGISRIL 479
               + Y A   A E+GH  V   L +           ++N    ++A    +  +   L
Sbjct: 121 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 180

Query: 480 MHGGATKDGIQQTN 493
                T+       
Sbjct: 181 CELAPTEATAMIQA 194

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 79.6 bits (195), Expect = 1e-16
 Identities = 23/184 (12%), Positives = 46/184 (25%), Gaps = 22/184 (11%)

Query: 149 MDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCS 208
              +   L    P    A             A+ +   +++  LL+    +        +
Sbjct: 173 HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML--------A 224

Query: 209 TPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNA 268
                    GE  +   +       +           L+   G  +++        +   
Sbjct: 225 YAEIHEFEYGEKYVNPFIARHVNRLKEMHD----AFKLSNPDGVFDLVT------KSECL 274

Query: 269 LTKDGNTALHLAVEDRRRDCARLLLANGA----RPDIRNARDGDTPLHITASLGYEQMVK 324
                   L    ++   D  R LL+        P      D +  L +   LG +    
Sbjct: 275 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 334

Query: 325 LLLQ 328
           LLL 
Sbjct: 335 LLLS 338

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 5e-33
 Identities = 65/240 (27%), Positives = 103/240 (42%), Gaps = 24/240 (10%)

Query: 244 IHLALRGGHLEVLKLLLIK-GANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIR 302
           +      G LE LK  ++   +      +D  TALH A            L     P   
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACS-AGHTEIVEFLLQLGVPVND 65

Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLG 362
               G +PLHI AS G +++VK LL KGA     N++G T                    
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTP------------------- 106

Query: 363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
             L  AA K        L+E GA  + KD +  TA+HRA+ KG ++++ +L+      + 
Sbjct: 107 --LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI 164

Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHG 482
           +D +G T LH A +    +  +LLV +GA +     +  +P+Q+A+      I + ++ G
Sbjct: 165 QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVEG 223

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 1e-27
 Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 24/240 (10%)

Query: 176 LLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTER 235
           + ++A + +  ++ + +L          +    T L  A +AG   IVE LL        
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 236 SETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLAN 295
            + + W P+H+A   G  E++K LL KGA VNA+ ++G T LH A    R + A +LL  
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 125

Query: 296 GARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRL 355
           GA PD ++     T +H  A+ G  +M+ +LL   A+  I++  G T   +A +      
Sbjct: 126 GANPDAKD-HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER--- 181

Query: 356 FDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLID 415
                             V   + L+  GA+I  ++    T L  A   G   +++ +++
Sbjct: 182 ------------------VEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 2e-26
 Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 7/224 (3%)

Query: 137 SPVLVL-LVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEF 195
           S ++V  L   G++++L+E +  +D +   A   D   +T LH A        +   L  
Sbjct: 3   SNLMVCNLAYSGKLEELKESIL-ADKS--LATRTDQDSRTALHWA-CSAGHTEIVEFLLQ 58

Query: 196 GPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEV 255
                +       +PL  AA+AG   IV+ LL + A       +   P+H A      E+
Sbjct: 59  LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 118

Query: 256 LKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITA 315
             +LL  GAN +A      TA+H A          +LL   A  +I++  +G+TPLH+  
Sbjct: 119 AVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD-TEGNTPLHLAC 177

Query: 316 SLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL 359
                +  KLL+ +GA+ YI NK  KT   VA   G   +   +
Sbjct: 178 DEERVEEAKLLVSQGASIYIENKEEKTPLQVAKG-GLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (193), Expect = 2e-17
 Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 2/127 (1%)

Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELL 226
           ++ +  G T LH A ++ R +I  +LLE G + +++      T +  AAA G   ++ +L
Sbjct: 97  NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA-TAMHRAAAKGNLKMIHIL 155

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
           L  KAST   +T    P+HLA     +E  KLL+ +GA++    K+  T L +A +    
Sbjct: 156 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLG 214

Query: 287 DCARLLL 293
              + ++
Sbjct: 215 LILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 5e-06
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 163 WNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALI 222
               +  D +G T LH+A  + R +  +LL+  G  +  + +    TPL+  A  G  LI
Sbjct: 159 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEK-TPLQ-VAKGGLGLI 216

Query: 223 VELLL 227
           ++ ++
Sbjct: 217 LKRMV 221

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  124 bits (311), Expect = 1e-32
 Identities = 73/249 (29%), Positives = 108/249 (43%), Gaps = 9/249 (3%)

Query: 226 LLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRR 285
           ++ RK +  + +         A   G  E +  LL +GA++N    DG TALH A  D  
Sbjct: 28  VVKRKKTKVKFDDGA--VFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDN 85

Query: 286 RDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYD 345
            D  + L+ NGA  +  +  +G  PLH  AS GY  + + L+ +GA+    N  G T  D
Sbjct: 86  VDMVKFLVENGANINQPD-NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD 144

Query: 346 VAAECGHSRLFDALKLGDSLCV------AARKGEVRTMQRLIEAGAAINGKDLHGWTALH 399
           +A E     L         + +        R       Q L             G TALH
Sbjct: 145 IAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALH 204

Query: 400 RASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSK 459
            A+ KG  EV+++LI    DV+ KD DG+T LH A   G  +   +LV+   D+EA    
Sbjct: 205 VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV 264

Query: 460 NVSPMQIAE 468
             +   +A+
Sbjct: 265 GQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  103 bits (256), Expect = 4e-25
 Identities = 70/278 (25%), Positives = 115/278 (41%), Gaps = 29/278 (10%)

Query: 172 QGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKA 231
               +   A +    + V  LLE G D+      G  T L  A       +V+ L+   A
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGL-TALHQACIDDNVDMVKFLVENGA 97

Query: 232 STERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARL 291
           +  + +   W P+H A   G+L++ + L+ +GA+V A+  +G+T L +A E+   +  + 
Sbjct: 98  NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN 157

Query: 292 LLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECG 351
            +           ++ +  +            + L     N     KSG TA        
Sbjct: 158 EVNRQGVDIEAARKEEERIMLR-------DARQWLNSGHINDVRHAKSGGTA-------- 202

Query: 352 HSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVR 411
                        L VAA KG    ++ LI+A   +N KD  GWT LH A+  GK E  R
Sbjct: 203 -------------LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACR 249

Query: 412 MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKK 449
           +L++   D++A ++ G TA   A E     + EL  K+
Sbjct: 250 ILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQ 287

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.1 bits (162), Expect = 7e-13
 Identities = 25/93 (26%), Positives = 42/93 (45%)

Query: 391 DLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKG 450
                     A   G  E V  L+++G D++  + DG TALH A    + D+ + LV+ G
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENG 96

Query: 451 ADVEARTSKNVSPMQIAECLHYAGISRILMHGG 483
           A++    ++   P+  A    Y  I+  L+  G
Sbjct: 97  ANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 154 EVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEA 213
           EVL+    A    +  D  G T LH A    + +  ++L+E   D+E+  + G  T  + 
Sbjct: 213 EVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ-TAFDV 271

Query: 214 AAAAGEALIVELL 226
           A       + EL 
Sbjct: 272 ADEDILGYLEELQ 284

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  119 bits (299), Expect = 7e-31
 Identities = 42/296 (14%), Positives = 92/296 (31%), Gaps = 26/296 (8%)

Query: 185 RPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKAST-ERSETSTWGP 243
            P  +   L      +++ +      L+         +   L    ++      +S    
Sbjct: 17  SPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQ 76

Query: 244 IHLALRGGHLEVLKLLLIKGANVNA-LTKDGNTALHLAVEDRRRDCARLLLANGARPDIR 302
            H++      EV         N+N  + + GNT LH        +  + L+ +G+     
Sbjct: 77  QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG 136

Query: 303 NARDGDTPLHI-------TASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRL 355
           +   G++ L           S  +E ++  L      +   +   +T             
Sbjct: 137 D-NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE---DSMNRTILHHIIITSGM-- 190

Query: 356 FDALKLGDSLCVAARKGEVRTMQRLIEAGAA-INGKDLHGWTALHRASFKGKIEVVRMLI 414
                       AA+      M  +++     I        +  +  + + K  ++  L 
Sbjct: 191 -------TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD 243

Query: 415 DK---GIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
            K      ++A+D +G T L+ A   G+  + + L+  GAD        + P+   
Sbjct: 244 LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (253), Expect = 1e-24
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 19/216 (8%)

Query: 152 LREVLERSDPA-WNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTP 210
           L+EV +       N     D  G T LH   +    ++V+ L++ G +       G S  
Sbjct: 85  LQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCL 144

Query: 211 LEA---AAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLE------------- 254
           ++A              LL          ++     +H  +    +              
Sbjct: 145 VKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL 204

Query: 255 VLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARD--GDTPLH 312
           +  ++  +   + + T +  +  +    +R+      L       ++ NA+D  GDT L+
Sbjct: 205 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN 264

Query: 313 ITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAA 348
           I A LG   +V  LL  GA+ +I NKSG    D  A
Sbjct: 265 IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.6 bits (161), Expect = 9e-13
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 380 LIEAGAAINGKDLHGWTALHRASFKGKI-EVVRMLIDKGIDVDAK-DEDGYTALHCAVES 437
           L    +  N +           SF   + EV     +  ++++   DE G T LH     
Sbjct: 58  LNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI 117

Query: 438 GHTDVTELLVKKGADVEARTSKNVSPMQIA-------ECLHYAGISRILMHGGATKDGIQ 490
            + ++ + LVK G++     +   S +  A       +   +  +   L      +D + 
Sbjct: 118 ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN 177

Query: 491 QTNL 494
           +T L
Sbjct: 178 RTIL 181

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.2 bits (160), Expect = 1e-12
 Identities = 20/146 (13%), Positives = 42/146 (28%), Gaps = 15/146 (10%)

Query: 151 DLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPD------------IVQLLLEFGPD 198
           D        D  +      D+  +T+LH  I                  ++  +++    
Sbjct: 155 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 214

Query: 199 VESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETST---WGPIHLALRGGHLEV 255
               G     +         +  I+E L  +                 +++A R G++ +
Sbjct: 215 PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI 274

Query: 256 LKLLLIKGANVNALTKDGNTALHLAV 281
           +  LL  GA+     K G   +    
Sbjct: 275 VDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 150 DDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCST 209
           D + E L+      N  ++ D+ G T L+IA       IV  LL++G D     + G   
Sbjct: 236 DSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL-R 294

Query: 210 PLEAAA 215
           P++  A
Sbjct: 295 PVDFGA 300

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  117 bits (293), Expect = 2e-30
 Identities = 58/286 (20%), Positives = 84/286 (29%), Gaps = 44/286 (15%)

Query: 170 DAQGQTLLHIAIAQRRPDIVQLLLEFGPD---VESQGRCGCSTPLEAAAAAGEALIVELL 226
              G T LH+A+  +    +  LL F      ++ Q   G  T L  AA  GEA  VE L
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQ-TALHLAAILGEASTVEKL 64

Query: 227 LARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR 286
            A  A    +E      +HLA R        +LL    +     +D +       +D   
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHP---RDASDTYLTQSQDCTP 121

Query: 287 DCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
           D +    A  ++P+  N                                 N  G T   V
Sbjct: 122 DTSHAPAAVDSQPNPENE-----------------EEPRDEDWRLQLEAENYDGHTPLHV 164

Query: 347 AAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGK 406
           A     +                                    +   G T LH A     
Sbjct: 165 AVIHKDAE--------------------MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA 204

Query: 407 IEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGAD 452
             V+ +L+  G D  A+   G T L  A+   +  +  LL   GA 
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (269), Expect = 3e-27
 Identities = 58/257 (22%), Positives = 88/257 (34%), Gaps = 43/257 (16%)

Query: 267 NALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARD--GDTPLHITASLGYEQMVK 324
             +T+DG+TALHLAV  +       LL   A  +  + ++  G T LH+ A LG    V+
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 325 LLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG 384
            L   GA   +  + G TA  +A                 L               +   
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACV------LLQPRPSHPRDASDTYLTQS 116

Query: 385 AAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG----------------- 427
                   H   A+  +    + E      D  + ++A++ DG                 
Sbjct: 117 QDCTPDTSHAPAAVD-SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175

Query: 428 -----------------YTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECL 470
                             T LH AVE+    V ELL+K GAD  AR     +P+  A   
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR 235

Query: 471 HYAGISRILMHGGATKD 487
               ++R+L   GA + 
Sbjct: 236 PNPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.3 bits (199), Expect = 6e-18
 Identities = 57/267 (21%), Positives = 82/267 (30%), Gaps = 37/267 (13%)

Query: 136 GSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEF 195
           G   L L V       L  +L  S       D  +  GQT LH+A        V+ L   
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGH-EYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67

Query: 196 GPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGP------------ 243
           G  V    R G +     A          +LL  + S  R  + T+              
Sbjct: 68  GAGVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126

Query: 244 --IHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDI 301
                +      E           + A   DG+T LH+AV  +  +  RLL   GA  + 
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186

Query: 302 RNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKL 361
                G TPLH+        +++LLL+ GA+   R   G+T    A    +         
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN--------- 237

Query: 362 GDSLCVAARKGEVRTMQRLIEAGAAIN 388
                           + L   GA   
Sbjct: 238 ------------PILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 3e-07
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 3/134 (2%)

Query: 140 LVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDV 199
                 D + +   E   R +      ++ +  G T LH+A+  +  ++V+LL + G D+
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184

Query: 200 ESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLL 259
                    TPL  A  A  A ++ELLL   A           P+  AL   +  + +LL
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244

Query: 260 LIKGANVNALTKDG 273
              GA      +DG
Sbjct: 245 RAHGA---PEPEDG 255

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  117 bits (292), Expect = 4e-30
 Identities = 64/276 (23%), Positives = 105/276 (38%), Gaps = 38/276 (13%)

Query: 209 TPLE-AAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLI------ 261
           +P++    AAG   I E +     +      +    +H        E  + L++      
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRHN-RTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 262 --KGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGY 319
              GA+VNA+  D NT L LAV  RRR     L+  GA P I N  +        A+   
Sbjct: 61  IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-RD 119

Query: 320 EQMVKLLLQKGANK---YIRNKSGKTAYDVAAECGHSRLFDALKLGDSLC---------- 366
             M+  +L     K      +++G TA  + A         + KL               
Sbjct: 120 FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR 179

Query: 367 VAARKGEVRT--------------MQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRM 412
             + K + RT                 + E G+  + +D  G T +  A+ +G+IEVV  
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 413 LIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVK 448
           LI +G  V+A D   +TA   A  + H ++ ++  +
Sbjct: 240 LIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  113 bits (283), Expect = 6e-29
 Identities = 59/274 (21%), Positives = 109/274 (39%), Gaps = 38/274 (13%)

Query: 242 GPIHLALR-GGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLL------- 293
            PI L     G   + + +  +  N+    +   T LH    +   + +  L+       
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 294 -ANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
            A GA  +  +  D +TPL +       ++V  L++ GA+  I NKS ++A   AA    
Sbjct: 61  IAAGADVNAMD-CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRD 119

Query: 353 SRLFDALKL---------------GDSLCVAARKGEV-----------RTMQRLIEAGAA 386
             +   +                   +L + A                +  +   +  A 
Sbjct: 120 FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR 179

Query: 387 INGKDLHGWTALHRASFKGKIEVVRMLID-KGIDVDAKDEDGYTALHCAVESGHTDVTEL 445
            + +   G TALH A+    + +V+ L+  KG + D +DEDG T +  A + G  +V   
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 446 LVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
           L+++GA VEA  + + +  Q+A+  ++  I  I 
Sbjct: 240 LIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.5 bits (145), Expect = 8e-11
 Identities = 27/124 (21%), Positives = 39/124 (31%), Gaps = 9/124 (7%)

Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRML--------IDKGID 419
               G     + +      I     H  T LH  +     E    L        I  G D
Sbjct: 8   TEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 66

Query: 420 VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
           V+A D D  T L  AV +    +   L+K GAD         S +  A      G+   +
Sbjct: 67  VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 126

Query: 480 MHGG 483
           ++  
Sbjct: 127 LNST 130

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.4 bits (137), Expect = 9e-10
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 143 LVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQ 202
           L    ++ ++  V        +  D  D  G+T + +A  + R ++V  L++ G  VE+ 
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV 250

Query: 203 GRCGCSTPLEAAAAAGEALIVELLL 227
                 T  + A A     IV++  
Sbjct: 251 DATDH-TARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 23/98 (23%), Positives = 38/98 (38%)

Query: 163 WNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALI 222
               DS   +G+T LH A       IV+ L+      + +      TP+  AA  G   +
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236

Query: 223 VELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLL 260
           V  L+ + AS E  + +      LA    H  ++ +  
Sbjct: 237 VMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (266), Expect = 4e-27
 Identities = 53/223 (23%), Positives = 81/223 (36%), Gaps = 22/223 (9%)

Query: 241 WGPIHLALRGGHLEVLKLLL----IKGANVNALTKDGNTALHLAVEDRRRDCARLLLANG 296
             P+H+A+  G+L  +  L+      G  ++       T LHLAV        RLL+  G
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 297 ARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNK----SGKTAYDVAAECGH 352
           A P   +        H+         ++ LL   A   +  +     G TA  VA     
Sbjct: 64  ASPMALDRHGQTAA-HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 353 SRLFDAL-------------KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALH 399
                 L                  L  A     +  +Q L++ GA +N +   G +ALH
Sbjct: 123 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALH 182

Query: 400 RASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDV 442
            AS +G + +VR L+  G D   K+    T L  A      D+
Sbjct: 183 SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.3 bits (222), Expect = 3e-21
 Identities = 67/247 (27%), Positives = 99/247 (40%), Gaps = 30/247 (12%)

Query: 173 GQTLLHIAIAQRRPDIVQLLLEF----GPDVESQGRCGCSTPLEAAAAAGEALIVELLLA 228
           G T LHIA+ Q     V  L+      G +++        TPL  A       +V LL+ 
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLPSVVRLLVT 61

Query: 229 RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTK----DGNTALHLAVEDR 284
             AS    +       HLA        L+ LL   A      +    DG TALH+AV   
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 285 RRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAY 344
            ++  +LLL  GA  D  + + G +PL          MV+LLLQ GAN   +  SG +A 
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 181

Query: 345 DVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFK 404
             A+  G                      +  ++ L+ +GA  + K+ H  T L  A  +
Sbjct: 182 HSASGRGL---------------------LPLVRTLVRSGADSSLKNCHNDTPLMVARSR 220

Query: 405 GKIEVVR 411
             I+++R
Sbjct: 221 RVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (171), Expect = 2e-14
 Identities = 39/144 (27%), Positives = 64/144 (44%)

Query: 147 GEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCG 206
                LR +L+ + P     ++ +  G T LH+A+     + VQLLLE G D+++     
Sbjct: 84  RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS 143

Query: 207 CSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANV 266
             +PL  A       +V+LLL   A+      S    +H A   G L +++ L+  GA+ 
Sbjct: 144 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS 203

Query: 267 NALTKDGNTALHLAVEDRRRDCAR 290
           +      +T L +A   R  D  R
Sbjct: 204 SLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 1e-12
 Identities = 47/222 (21%), Positives = 76/222 (34%), Gaps = 7/222 (3%)

Query: 136 GSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEF 195
           G   L + V  G +  +  ++          D  +   QT LH+A+    P +V+LL+  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 196 GPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEV 255
           G    +  R G +     A        +  LL   A       +       AL       
Sbjct: 63  GASPMALDRHGQTAA-HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 256 LK-----LLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTP 310
            +     LL           K G + L  AVE+      +LLL +G          G + 
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNAQMYSGSSA 180

Query: 311 LHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
           LH  +  G   +V+ L++ GA+  ++N    T   VA     
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 425 EDGYTALHCAVESGHTDVTELLVK----KGADVEARTSKNVSPMQIAECLHY 472
           EDG T LH AV  G+      LV      G +++   +   +P+ +A     
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL 52

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  103 bits (256), Expect = 6e-26
 Identities = 52/206 (25%), Positives = 78/206 (37%), Gaps = 13/206 (6%)

Query: 254 EVLKLLLIKGANVNALT-KDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLH 312
           +V+  LL +GA +NA   K G T+LHLA    R D A+ LL  GA  + ++         
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 313 ITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDS-------- 364
             A+        LL  +  N   R   G T   +AA      + + L   D+        
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 122

Query: 365 ----LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
               L  AA       +  L+   A  + +D    T L  A+ +G  E  + L+D   + 
Sbjct: 123 GKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR 182

Query: 421 DAKDEDGYTALHCAVESGHTDVTELL 446
           +  D         A E  H D+  LL
Sbjct: 183 EITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 91.8 bits (226), Expect = 7e-22
 Identities = 54/205 (26%), Positives = 83/205 (40%), Gaps = 13/205 (6%)

Query: 288 CARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVA 347
               LLA GA  +    + G+T LH+ A        K LL  GA+   ++ +G+T    A
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 348 AECGHSRLFDALKLGDSLCVAARKGEVRTM-------------QRLIEAGAAINGKDLHG 394
                  +F  L    +  + AR  +  T              + LI A A IN  D  G
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSG 123

Query: 395 WTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVE 454
            TALH A+     E V +L+    + DA+D+   T L  A   G  + ++ L+   A+ E
Sbjct: 124 KTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANRE 183

Query: 455 ARTSKNVSPMQIAECLHYAGISRIL 479
                +  P  +A    +  I R+L
Sbjct: 184 ITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 79.4 bits (194), Expect = 1e-17
 Identities = 56/196 (28%), Positives = 84/196 (42%), Gaps = 1/196 (0%)

Query: 164 NPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIV 223
               + D  G+T LH+A    R D  + LL+ G D  SQ   G +    A AA    +  
Sbjct: 14  ELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQ 73

Query: 224 ELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVED 283
            LL  R  +          P+ LA R     +++ L+   A++NA    G TALH A   
Sbjct: 74  ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAV 133

Query: 284 RRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTA 343
              +   +LL + A  D ++    +TPL + A  G  +  K LL   AN+ I +   +  
Sbjct: 134 NNTEAVNILLMHHANRDAQD-DKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLP 192

Query: 344 YDVAAECGHSRLFDAL 359
            DVA+E  H  +   L
Sbjct: 193 RDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.5 bits (111), Expect = 9e-07
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 163 WNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALI 222
               D+ D + +T L +A  +   +  + LL+   + E         P + A+      I
Sbjct: 146 HANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDR-LPRDVASERLHHDI 204

Query: 223 VELL 226
           V LL
Sbjct: 205 VRLL 208

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (254), Expect = 2e-25
 Identities = 43/229 (18%), Positives = 71/229 (31%), Gaps = 22/229 (9%)

Query: 243 PIHLALRGGHLEVLKLLLI-KGANVNALTKDGNTALHLAVEDRRRDCARLLLANG----- 296
           P+H A        ++ LL  K + +    +DG   LH +V  +  +    LL+       
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 297 -----------ARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYD 345
                                          L  +                 K       
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 346 VAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG-AAINGKDLHGWTALHRASFK 404
              E G S           L  AA  G ++ ++ L   G +A+N +D  GWT L  A  +
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 182

Query: 405 GKIEVVRMLIDK-GIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGAD 452
           G  +   +L++K G + D  D  G  A   A+   +  V +  +    D
Sbjct: 183 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.3 bits (165), Expect = 1e-13
 Identities = 47/218 (21%), Positives = 75/218 (34%), Gaps = 8/218 (3%)

Query: 144 VKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQG 203
             + E   ++E+L  S P+       D  G+  LH +++ +  +I   LL    +V    
Sbjct: 8   CMENEFFKVQELLH-SKPS--LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 64

Query: 204 RCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWG----PIHLALRGGHLEVLKLL 259
               S       A     +  +        +             +HLA+     EV + L
Sbjct: 65  YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL 124

Query: 260 LIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGY 319
           +  GA+V    K     LH A          LL   G        + G TPL    + G+
Sbjct: 125 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 184

Query: 320 EQMVKLLLQK-GANKYIRNKSGKTAYDVAAECGHSRLF 356
                LL++K GA   + +  G  A DVA      + F
Sbjct: 185 GDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.1 bits (154), Expect = 3e-12
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 396 TALHRASFKGKIEVVRMLID-KGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKG 450
             LH+A  + +   V+ L+  K   +  KD+DG   LH +V     ++T  L+ K 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 1e-10
 Identities = 40/230 (17%), Positives = 65/230 (28%), Gaps = 56/230 (24%)

Query: 308 DTPLHITASLGYEQMVKLLL-QKGANKYIRNKSGKTAYDVAAECGHSRLFDAL------- 359
           + PLH          V+ LL  K +    +++ G+     +       +   L       
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 360 ----------KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEV 409
                          +  +    EV            +N     G T LH A  K   EV
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 410 VRMLIDKGIDVDAKDEDGYTALH----------------------------------CAV 435
            + LI+ G  V  KD+     LH                                   A+
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 436 ESGHTDVTELLVKK-GADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
             GH D   LLV+K GA+ +   +K      +A       + +  ++   
Sbjct: 181 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ---VKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.7 bits (122), Expect = 4e-08
 Identities = 26/137 (18%), Positives = 40/137 (29%), Gaps = 39/137 (28%)

Query: 163 WNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFG-PDVESQGRCGCSTPLEAAAAAGEAL 221
                  D   Q  LH A +     +++LL   G   V  Q + G +             
Sbjct: 128 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT------------- 174

Query: 222 IVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIK-GANVNALTKDGNTALHLA 280
                                P+  AL  GH +   LL+ K GA  + +   G  A  +A
Sbjct: 175 ---------------------PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 213

Query: 281 VEDRRRDCARLLLANGA 297
           +        +  L N  
Sbjct: 214 L---NEQVKKFFLNNVV 227

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.1 bits (237), Expect = 2e-23
 Identities = 46/215 (21%), Positives = 82/215 (38%), Gaps = 21/215 (9%)

Query: 243 PIHLALRGGH----LEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGAR 298
            +HLA+        +EV++ +    A +N       T LHLAV   + + A  LL  G  
Sbjct: 5   FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 64

Query: 299 PDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDA 358
           P++R+ R            G    V +L Q     ++ +    T Y+             
Sbjct: 65  PELRDFRGNTPLHLACEQ-GCLASVGVLTQSCTTPHLHSILKATNYNGHTCL-------- 115

Query: 359 LKLGDSLCVAARKGEVRTMQRLIEAGAAI-NGKDLHGWTALHRASFKGKIEVVRMLIDKG 417
                   +A+  G +  ++ L+  GA +   +  +G TALH A      ++V +L+  G
Sbjct: 116 -------HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 168

Query: 418 IDVDAKDEDGYTALHCAVESGHTDVTELLVKKGAD 452
            DV+     GY+          T + + L +   +
Sbjct: 169 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (180), Expect = 9e-16
 Identities = 47/198 (23%), Positives = 75/198 (37%), Gaps = 11/198 (5%)

Query: 173 GQTLLHIAIAQRRPDIVQLLLEF----GPDVESQGRCGCSTPLEAAAAAGEALIVELLLA 228
           G + LH+AI      +   ++         +  Q      TPL  A    +  I E LL 
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEIAEALLG 60

Query: 229 RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTK------DGNTALHLAVE 282
                E  +     P+HLA   G L  + +L       +  +       +G+T LHLA  
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 283 DRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKT 342
                   LL++ GA  + +   +G T LH+   L    +V LLL+ GA+       G +
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 343 AYDVAAECGHSRLFDALK 360
            Y +      +R+   L 
Sbjct: 181 PYQLTWGRPSTRIQQQLG 198

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 6e-15
 Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 9/220 (4%)

Query: 136 GSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEF 195
           G   L L +   E     EV+ +        +  +   QT LH+A+   +P+I + LL  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 196 GPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSE-----TSTWGPIHLALRG 250
           G D E +   G +    A      A +  L  +       S       +    +HLA   
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 251 GHLEVLKLLLIKGANV-NALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDT 309
           G+L +++LL+  GA+V      +G TALHLAV+ +  D   LLL  GA  +      G +
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT-YQGYS 180

Query: 310 PLHITASLGYEQMVKLLLQKGAN--KYIRNKSGKTAYDVA 347
           P  +T      ++ + L Q      + +     + +YD  
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 220

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (165), Expect = 1e-13
 Identities = 42/205 (20%), Positives = 72/205 (35%), Gaps = 23/205 (11%)

Query: 306 DGDTPLHITASLGY----EQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKL 361
           DGD+ LH+           ++++ +    A    +N   +T   +A       + +AL  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 362 GDSLCVAARKGEVRTM------------------QRLIEAGAAINGKDLHGWTALHRASF 403
                          +                         + +   + +G T LH AS 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 404 KGKIEVVRMLIDKG-IDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVS 462
            G + +V +L+  G      +  +G TALH AV+  + D+  LL+K GADV   T +  S
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 463 PMQIAECLHYAGISRILMHGGATKD 487
           P Q+        I + L        
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLENL 205

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.8 bits (199), Expect = 1e-18
 Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 4   LVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLA 63
           L+ + P+  +        +    + L NV     VAF+++ T   +Y VKP +    P A
Sbjct: 18  LLHISPAEELYFGSIESGEKKTLIVLTNV-TKNIVAFKVRTTAPEKYRVKPSNSSCDPGA 76

Query: 64  TLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTRKKQ 123
           ++ + ++ H               D FL+ +  +       ++ T  +  S ++    + 
Sbjct: 77  SIDIIVSPHGGL-------TVSAQDRFLIMAAEME-----QSSGTGPAELSQFWKEVPRN 124

Query: 124 VFIDSGIKIMFVGSPVLVLLVKDGE 148
             ++  ++   V S     L+  G 
Sbjct: 125 KVMEHRLRCHTVESSKPNSLMLSGP 149

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.7 bits (192), Expect = 7e-18
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 13/153 (8%)

Query: 306 DGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSL 365
           D    L   A  G +  V++L+  GA  +  +  G +   +AA+ GH    + L      
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAP-FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 366 CVAARKGEV------------RTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRML 413
             A  K +               ++ L++ GA +N KD+   TALH A+     EVV +L
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 414 IDKGIDVDAKDEDGYTALHCAVESGHTDVTELL 446
           I  G DV  + +   TA   ++++G+ D+ E+L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.9 bits (125), Expect = 5e-09
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 3/152 (1%)

Query: 175 TLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTE 234
             L  A    + D V++L+  G    +      ++PL  AA  G     E+LL    S +
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTD--WLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 235 RSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLA 294
                   P+H+A   GH  ++++LL  GA+VNA      TALH A E   ++   LL+ 
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121

Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLL 326
            GA    ++ +   T   I+   G E + ++L
Sbjct: 122 YGADVHTQS-KFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.4 bits (121), Expect = 2e-08
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 33/150 (22%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIR 302
            +  A R G  + +++L+  GA        G + LHLA +        +LL  G   D R
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 303 NARD--------------------------------GDTPLHITASLGYEQMVKLLLQKG 330
              D                                  T LH      ++++V+LL++ G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 331 ANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
           A+ + ++K  KTA+D++ + G+  L + L+
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 10/47 (21%), Positives = 15/47 (31%)

Query: 426 DGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHY 472
           D    L  A  +G  D   +L+  GA               A+  H+
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHF 47

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 74.6 bits (183), Expect = 9e-17
 Identities = 17/131 (12%), Positives = 41/131 (31%), Gaps = 14/131 (10%)

Query: 4   LVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLA 63
            +  +P   +        K +  + + N      + + I+ TN  R  V P  G++ P  
Sbjct: 6   DIQTQPGTKIVFNAPYDDKHTYHIKVINS-SARRIGYGIKTTNMKRLGVDPPCGVLDPKE 64

Query: 64  TLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTRKKQ 123
            + + ++      +   +     +D   +     P    K           +WF  +   
Sbjct: 65  AVLLAVSCD--AFAFGQE--DTNNDRITVEWTNTPDGAAKQ-------FRREWF--QGDG 111

Query: 124 VFIDSGIKIMF 134
           +     + I +
Sbjct: 112 MVRRKNLPIEY 122

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 2e-15
 Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 14/155 (9%)

Query: 305 RDGDTPLHITASLGYEQMVKLLLQK-GANKYIRNKSGKTAYDVAAECGHSRLFDALKL-- 361
           R GD  L   A+ G  Q V+ LL +   +    N+ GKTA  V      +   + LK   
Sbjct: 1   RAGDR-LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGA 59

Query: 362 ---------GDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRM 412
                       +  AAR G + T++ L+E GA +N  D  G   +H A  +G   VV  
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 413 LIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLV 447
           L  +  D+  +D  G T L  A++ G  D+ ++L 
Sbjct: 120 LAAES-DLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 4e-10
 Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 11/155 (7%)

Query: 271 KDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKG 330
           + G+     A     ++  RLL      PD  N R G T L +         ++LL Q  
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALN-RFGKTALQVMMFGSTAIALELLKQGA 59

Query: 331 ANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGE----------VRTMQRL 380
           +            +D A       L   ++ G  + V    G              +   
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 381 IEAGAAINGKDLHGWTALHRASFKGKIEVVRMLID 415
           + A + ++ +D  G T L  A  +G  ++V +L  
Sbjct: 120 LAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 4e-05
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 261 IKGANVNALTKDGNTALHLAVEDRRRDCARLLL 293
              ++++     G T L LA++   +D   +L 
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 1/47 (2%)

Query: 427 GYTALHCAVESGHTD-VTELLVKKGADVEARTSKNVSPMQIAECLHY 472
               L  A   G    V  LL ++    +A      + +Q+      
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST 48

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 162 AWNPADSADAQGQTLLHIAIAQRRPDIVQLLLE 194
           A +     DA+G T L +A+ +   D+V +L  
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.8 bits (167), Expect = 2e-14
 Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 42/131 (32%)

Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGK------DLHGWTALH---RASFKGKIEVVRMLI 414
           SLC A +  ++  + +    G  +  K           TALH   R+  +  + +V  L+
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 415 DKGIDV---------------------------------DAKDEDGYTALHCAVESGHTD 441
               ++                                 +  +E G T L  A    H  
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 128

Query: 442 VTELLVKKGAD 452
             ELL +  + 
Sbjct: 129 CEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.6 bits (143), Expect = 3e-11
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query: 209 TPLEAAAAAGEALIVELLLARKASTERSETSTWG------PIHLALR---GGHLEVLKLL 259
             L  A    +   +    A             G       +HLA+R      L ++  L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 260 LIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGY 319
           +    N++  T  G+TALH        +C +LLL   A  +I N   G+TPL I   L +
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN-ESGETPLDIAKRLKH 126

Query: 320 EQMVKLLLQKGANKY 334
           E   +LL Q  + ++
Sbjct: 127 EHCEELLTQALSGRF 141

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (138), Expect = 1e-10
 Identities = 31/168 (18%), Positives = 53/168 (31%), Gaps = 34/168 (20%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALT------KDGNTALHLAVEDRRR---DCARLLL 293
            +  A++   +  L      G ++          +   TALHLAV    R        L+
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 294 ANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHS 353
            N    D +  +      +   +   E +  LL +  A+  I N+SG+T  D+A    H 
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL-RGKASIEIANESGETPLDIAKRLKH- 126

Query: 354 RLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLH---GWTAL 398
                                   + L +A +      +H    W  L
Sbjct: 127 --------------------EHCEELLTQALSGRFNSHVHVEYEWRLL 154

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.0 bits (131), Expect = 1e-09
 Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 11/140 (7%)

Query: 171 AQGQTLLHIAI-AQRRPDI--VQLLLEFGPDVE-----SQGRCGCSTPLEAAAAAGE--- 219
           A     LH    A +  DI  +      G D+      + G     T L  A  + +   
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 220 ALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHL 279
             IV+ L+    + ++        +H      + E LKLLL   A++    + G T L +
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 280 AVEDRRRDCARLLLANGARP 299
           A   +   C  LL    +  
Sbjct: 121 AKRLKHEHCEELLTQALSGR 140

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (164), Expect = 4e-14
 Identities = 35/154 (22%), Positives = 54/154 (35%), Gaps = 12/154 (7%)

Query: 309 TPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVA 368
             L   A+ G  + +  LLQ   N   +N  G+TA  V            L  G +  + 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 369 ARKGEVRTMQRLI-----------EAGAAINGKDLHGWTALHRASFKGKI-EVVRMLIDK 416
            R G                    E  A +N +D  G   LH A+ +G +  V  ++   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 417 GIDVDAKDEDGYTALHCAVESGHTDVTELLVKKG 450
             +V  ++  G TA   A   G  +V  L+   G
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (162), Expect = 7e-14
 Identities = 42/178 (23%), Positives = 61/178 (34%), Gaps = 23/178 (12%)

Query: 241 WG-PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARP 299
           WG  +  A   G LE L  LL    NVNA    G TAL +          R  L      
Sbjct: 1   WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARR--LLLRGAN 58

Query: 300 DIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL 359
                R G   +H  A  G+   ++ LL+  A+  I +  G     +AA+ GH       
Sbjct: 59  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH------- 111

Query: 360 KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKG 417
                               +    + +  ++  G TA   A   G+ EVV ++   G
Sbjct: 112 -------------LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 6e-07
 Identities = 22/156 (14%), Positives = 42/156 (26%), Gaps = 6/156 (3%)

Query: 177 LHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERS 236
           L  A A+   + +  LL+   +V +Q   G +          E                 
Sbjct: 5   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRL----LLRGANPD 60

Query: 237 ETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANG 296
                G   +        +  L  +     +   +D    L L +  +      +     
Sbjct: 61  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 120

Query: 297 ARPDIRNARD--GDTPLHITASLGYEQMVKLLLQKG 330
                   R+  GDT   +    G  ++V L+   G
Sbjct: 121 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 7/44 (15%), Positives = 17/44 (38%)

Query: 429 TALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHY 472
             L  A   G  +    L++   +V A+     + +Q+ +  + 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP 46

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 8e-04
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 163 WNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFG 196
            +     + +G T   +A    R ++V L+   G
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.3 bits (141), Expect = 3e-11
 Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 15/112 (13%)

Query: 4   LVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLA 63
           +++++P          G        + +      +AF+++ +N   Y V+P  G +    
Sbjct: 3   MINVDPPTGN-YPATGGNS---THNITSE-SDSRLAFKVKSSNNEHYRVRPVYGFVDAKG 57

Query: 64  TLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSD 115
              ++I     PG       P  +D  ++    VP     D  +   +    
Sbjct: 58  KSKLDINRL--PG-------PPKEDKIVIQYAEVPA-EETDPMAPFKAGAQQ 99

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.2 bits (133), Expect = 3e-10
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 14/95 (14%)

Query: 5  VSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLAT 64
          ++ +P         P    S    L N      + F+I+ +N   Y + P  G + P  +
Sbjct: 1  LTADPPAC----TVPAAGVSSTHKLVNG-GAEKIVFKIKSSNNNEYRIAPVFGFVDPSGS 55

Query: 65 LSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPG 99
            V I      G          +D  ++H    P 
Sbjct: 56 KDVVITRT--AG-------APKEDKLVVHFASAPA 81

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 1e-09
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 36/125 (28%)

Query: 365 LCVAARKGEVRTMQRLIEAGAAIN---------------------------------GKD 391
           L  ++ +GE   +QR+I      +                                   D
Sbjct: 5   LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 64

Query: 392 LHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD-EDGYTA--LHCAVESGHTDVTELLVK 448
             GWT LH A+    ++V + L++ G  V A    D  TA      +E G+T  ++ L  
Sbjct: 65  SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 124

Query: 449 KGADV 453
               +
Sbjct: 125 VQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 1e-08
 Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 4/127 (3%)

Query: 175 TLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTE 234
            LL  +  +   D+VQ ++    D       G +     A  AG   IV+ L+    +  
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITAL-HNAVCAGHTEIVKFLVQFGVNVN 61

Query: 235 RSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALT-KDGNTALHLAVEDRR--RDCARL 291
            +++  W P+H A    +++V K L+  GA V A+T  D  TA     E       C++ 
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 292 LLANGAR 298
           L     +
Sbjct: 122 LYGVQEK 128

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 5e-08
 Identities = 16/125 (12%), Positives = 32/125 (25%), Gaps = 35/125 (28%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTK------------------------------- 271
            +  +   G  ++++ ++ +  + +                                   
Sbjct: 4   LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 63

Query: 272 --DGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASL--GYEQMVKLLL 327
             DG T LH A         + L+ +GA        D  T       +  GY Q  + L 
Sbjct: 64  DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 123

Query: 328 QKGAN 332
                
Sbjct: 124 GVQEK 128

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 15/124 (12%)

Query: 309 TPLHITASLGYEQMVKLLLQKGAN------------KYIRNKSGKTAYDVAAECGHSRLF 356
             L  ++  G   +V+ ++ +  +                            + G +   
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 357 DALKLGDSLCVAARKGEVRTMQRLIEAGAAINGK---DLHGWTALHRASFKGKIEVVRML 413
                   L  AA    V+  + L+E+GAA+      D+           +G  +  + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 414 IDKG 417
               
Sbjct: 123 YGVQ 126

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 6e-04
 Identities = 27/100 (27%), Positives = 55/100 (55%)

Query: 396 TALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEA 455
             L  +S +G+ ++V+ +I +  D    +++G TALH AV +GHT++ + LV+ G +V A
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 456 RTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLR 495
             S   +P+  A   +   + + L+  GA    +  ++++
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQ 102

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 2e-06
 Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 12/121 (9%)

Query: 307 GDTPLHITASLGYEQMVKLLLQKGANK------------YIRNKSGKTAYDVAAECGHSR 354
               L   A+ G  + V+ LL+ GAN              +   S + A  +        
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI 414
             D   L   +  AAR+G + T+  L  AGA ++ +D  G   +  A   G  +V R L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 415 D 415
            
Sbjct: 123 A 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 5e-06
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 33/118 (27%)

Query: 362 GDSLCVAARKGEVRTMQRLIEAGAAIN--------------------------------- 388
            D L  AA +G V  ++ L+EAGA  N                                 
Sbjct: 4   ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNC 63

Query: 389 GKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELL 446
                    +H A+ +G ++ + +L   G  +D +D  G   +  A E GH DV   L
Sbjct: 64  ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 6e-05
 Identities = 33/122 (27%), Positives = 46/122 (37%), Gaps = 1/122 (0%)

Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKAS 232
               L  A A+ R + V+ LLE G +  +    G          +       LLL     
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARV-AELLLLHGAEP 61

Query: 233 TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLL 292
                 +   P+H A R G L+ L +L   GA ++     G   + LA E   RD AR L
Sbjct: 62  NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

Query: 293 LA 294
            A
Sbjct: 122 RA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 1e-04
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIR 302
            +  A   G +E ++ LL  GAN NA            +       A LLL +GA P+  
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNA-PNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
           +      P+H  A  G+   + +L + GA   +R+  G+   D+A E GH  +   L+
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 8e-04
 Identities = 11/48 (22%), Positives = 17/48 (35%)

Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHY 472
           E     L  A   G  +    L++ GA+  A  S    P+Q+      
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSA 48

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.004
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 394 GWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHC 433
               L  A+ +G++E VR L++ G + +A +  G   +  
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV 42

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.3 bits (92), Expect = 7e-05
 Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 24/140 (17%)

Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLC 366
            D         G    VK  + KG +     + G+     AA+CG               
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQ-------------- 47

Query: 367 VAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDED 426
                  +  ++ L+  GA IN  D H  T L  A ++G +  V++L+ KG D   K  D
Sbjct: 48  -------LEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD 100

Query: 427 GYTALHCAVESGHTDVTELL 446
           G TAL       +  +  LL
Sbjct: 101 GLTALEATD---NQAIKALL 117

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.3 bits (92), Expect = 8e-05
 Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 207 CSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANV 266
           C      A   G+   V+  +A+     R+      P+H A   G LE+L+ LL+KGA++
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61

Query: 267 NALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLL 326
           NA  K   T L  AV +    C +LLL+ GA   ++   DG T L  T +    Q +K L
Sbjct: 62  NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG-PDGLTALEATDN----QAIKAL 116

Query: 327 LQ 328
           LQ
Sbjct: 117 LQ 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	541
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87
d1grwa_	124	Major sperm protein, MSP {Nematode (Caenorhabditis	99.31
d1wica_	152	MSP domain containing protein 2, Mospd2 {Mouse (Mu	99.17
d1m1sa_	109	WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623	98.91
d1rowa_	107	SSP-19 {Nematode (Caenorhabditis elegans) [TaxId:	98.63

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-50  Score=409.58  Aligned_cols=336  Identities=32%  Similarity=0.489  Sum_probs=233.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc
Q 037006          138 PVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAA  217 (541)
Q Consensus       138 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~  217 (541)
                      ||||.||..|+.++|++|++.+.    +++..|..|.||||+||..|+.++|++|+++|++++..+.. |.|||++|+..
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~----~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~-g~t~L~~A~~~   76 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGA----SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD-DQTPLHCAARI   76 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTC----CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTT-SCCHHHHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCC-CCCHHHHHHHc
Confidence            79999999999999999999864    36788999999999999999999999999999999998887 89999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCC---------------------------------CCCCchHHHHHHhcCCHHHHHHHHHcCC
Q 037006          218 GEALIVELLLARKASTERS---------------------------------ETSTWGPIHLALRGGHLEVLKLLLIKGA  264 (541)
Q Consensus       218 g~~~iv~~Ll~~g~~~~~~---------------------------------~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~  264 (541)
                      |+.+++++|+..+.+....                                 +..+.++++.|+..++.+++++|+++|+
T Consensus        77 g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~  156 (408)
T d1n11a_          77 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA  156 (408)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999877665433                                 3444556666666666666666666666


Q ss_pred             CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchh
Q 037006          265 NVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAY  344 (541)
Q Consensus       265 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l  344 (541)
                      +++..+.+|.+||++|+..|+.+++++|+++|++++..+ ..|.||+|.++.....++...|+..+......+..+.||+
T Consensus       157 ~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l  235 (408)
T d1n11a_         157 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA-WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL  235 (408)
T ss_dssp             CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccC-CCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHH
Confidence            666666666666666666666666666666666665554 4556666666666666666666666555555555666666


Q ss_pred             HHHHHcCCHHHHHHhhc------------CCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHH
Q 037006          345 DVAAECGHSRLFDALKL------------GDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRM  412 (541)
Q Consensus       345 ~~A~~~g~~~~~~~l~~------------~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~  412 (541)
                      +.|+..++.++++.+..            ..+++.++..++.+++++|+++|++++..+..+.||||.++..++.+++++
T Consensus       236 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~  315 (408)
T d1n11a_         236 HLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF  315 (408)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHH
T ss_pred             HHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeee
Confidence            66666666665555521            123556666666666666666666666666666666666666666666666


Q ss_pred             HHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHH
Q 037006          413 LIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL  479 (541)
Q Consensus       413 Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  479 (541)
                      +++.|+++|.+|..|+||||+|+++|+.++|++|+++||+++.+|.+|+||||+|+..|+.++|++|
T Consensus       316 ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         316 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             eccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666655544

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-46  Score=381.88  Aligned_cols=331  Identities=29%  Similarity=0.415  Sum_probs=297.9

Q ss_pred             hhhhhhcCCceee---cCcHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCC
Q 037006          122 KQVFIDSGIKIMF---VGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPD  198 (541)
Q Consensus       122 ~~~~~~~~~~~~~---~g~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  198 (541)
                      .+.+++.|.++..   .|.||||+|++.|+.+++++|++++..    ++..+..|.||||+|+..|+.+++++|++.+.+
T Consensus        16 v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad----i~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~   91 (408)
T d1n11a_          16 VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK----VNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN   91 (408)
T ss_dssp             HHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC----SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhc
Confidence            4567788877754   478999999999999999999998743    678899999999999999999999999987664


Q ss_pred             Ccc---------------------------------cCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHH
Q 037006          199 VES---------------------------------QGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIH  245 (541)
Q Consensus       199 ~~~---------------------------------~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~  245 (541)
                      ...                                 .+. .+.++++.|+..++.+++++|+++|++++..+..+.+|||
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~  170 (408)
T d1n11a_          92 PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK-KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLH  170 (408)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHH
T ss_pred             cccccccccchhhhhhhhccccccccccccccccccccc-ccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHH
Confidence            322                                 222 3678999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHH
Q 037006          246 LALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKL  325 (541)
Q Consensus       246 ~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~  325 (541)
                      +|+..|+.+++++|+++|++++..+..|.||+++++...+.++...++..+......+ ..+.|||++|+..++.+++++
T Consensus       171 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~  249 (408)
T d1n11a_         171 VAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES-VQGVTPLHLAAQEGHAEMVAL  249 (408)
T ss_dssp             HHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccC-CCCCCHHHHHHHhCcHhHhhh
Confidence            9999999999999999999999999999999999999999999999999988887766 678999999999999999999


Q ss_pred             HHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhc------------CCchHHHHhhCCHHHHHHHHHcCCCCCCCCCC
Q 037006          326 LLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKL------------GDSLCVAARKGEVRTMQRLIEAGAAINGKDLH  393 (541)
Q Consensus       326 Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~------------~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~  393 (541)
                      +.+.+...+..+..|.||++.|++.++.+++++|..            .++++.++..++.++++++++.|+++|.+|.+
T Consensus       250 ~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~  329 (408)
T d1n11a_         250 LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL  329 (408)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTT
T ss_pred             hhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCC
Confidence            999999999999999999999999999999998832            24689999999999999999999999999999


Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHH---HCCCCCcccCC
Q 037006          394 GWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLV---KKGADVEARTS  458 (541)
Q Consensus       394 g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll---~~ga~~~~~~~  458 (541)
                      |+||||.|++.|+.++|++|+++|+|+|.+|.+|+||||+|+++|+.++|++|.   +++++....+.
T Consensus       330 G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~~  397 (408)
T d1n11a_         330 GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK  397 (408)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC----
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhcccccccccc
Confidence            999999999999999999999999999999999999999999999999998664   35666555443

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-39  Score=313.40  Aligned_cols=270  Identities=31%  Similarity=0.373  Sum_probs=238.0

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcC
Q 037006          172 QGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGG  251 (541)
Q Consensus       172 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g  251 (541)
                      ++.|+||.|++.|+.++|++|+++|++++.++...|.||||+|+..|+.+++++|++.+......+..+.++.++|+..+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            35799999999999999999999999999888777999999999999999999999999999888888999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccC---------CCCCCcHHHHHHHcCCHHH
Q 037006          252 HLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRN---------ARDGDTPLHITASLGYEQM  322 (541)
Q Consensus       252 ~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~---------~~~g~t~L~~A~~~g~~~~  322 (541)
                      ..+...++++...+....+..+.+++++|+..++..+++.++....+++...         ...|.||||+|+..|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence            9999999999988888888999999999999999999999999877766443         2458999999999999999


Q ss_pred             HHHHHHc-CCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHH
Q 037006          323 VKLLLQK-GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRA  401 (541)
Q Consensus       323 v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A  401 (541)
                      +++|++. |++++..+..|.+++..+...+.                 ..+..+++++|+++|++++.++..|.||||+|
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~-----------------~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a  226 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSD-----------------DSDVEAITHLLLDHGADVNVRGERGKTPLILA  226 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSC-----------------TTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred             HHHHHhccCCCcccccCCCCccccccccccc-----------------chHHHHHHHHHHHCCCCCCccCCCCCCccchh
Confidence            9999974 78999999999988877654433                 22334578889999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCC
Q 037006          402 SFKGKIEVVRMLIDK-GIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTS  458 (541)
Q Consensus       402 a~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~  458 (541)
                      +..|+.++|++|++. |+++|.+|.+|+||||+|+++|+.++|++|+++|||+|++|.
T Consensus       227 ~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         227 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             hhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            999999999999985 899999999999999999999999999999999999998874

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-38  Score=288.95  Aligned_cols=218  Identities=29%  Similarity=0.375  Sum_probs=184.0

Q ss_pred             chHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCC
Q 037006          241 WGPIHLALRGGHLEVLKLLLI-KGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGY  319 (541)
Q Consensus       241 ~t~L~~Aa~~g~~~iv~~Ll~-~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~  319 (541)
                      .+.|+.+|..|+.+.++.++. .+.+++.+|..|+||||+|+..|+.+++++|++.+....... ..+.++++.++..++
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGR   82 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCC-TTCCCHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccc-ccccccccccccccc
Confidence            457777888888777755554 466777888888888888888888888888888877777665 567788888888888


Q ss_pred             HHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHH
Q 037006          320 EQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALH  399 (541)
Q Consensus       320 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~  399 (541)
                      .+++++|+++|++++..|..|.||||+|+..|+.+                     ++++|+++|++++.++..|.||||
T Consensus        83 ~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e---------------------~~~~Ll~~g~d~~~~~~~~~t~L~  141 (223)
T d1uoha_          83 DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHE---------------------IAVMLLEGGANPDAKDHYEATAMH  141 (223)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH---------------------HHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cchhHHHhccCceeEeeCCCCCchhhHHHHcCCHH---------------------HHHHHHHCCCCCCCcCCCCCccch
Confidence            88888888888888888888888888877665544                     477788888888888999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHH
Q 037006          400 RASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL  479 (541)
Q Consensus       400 ~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  479 (541)
                      +|+..++.+++++|++.|.+++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+| ..|+.+++++|
T Consensus       142 ~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~L  220 (223)
T d1uoha_         142 RAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRM  220 (223)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHH
T ss_pred             hhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998 46899999999


Q ss_pred             Hh
Q 037006          480 MH  481 (541)
Q Consensus       480 l~  481 (541)
                      ++
T Consensus       221 l~  222 (223)
T d1uoha_         221 VE  222 (223)
T ss_dssp             HC
T ss_pred             cC
Confidence            86

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.6e-38  Score=297.50  Aligned_cols=105  Identities=33%  Similarity=0.409  Sum_probs=98.8

Q ss_pred             HHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCC-CCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCC
Q 037006          381 IEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK-DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSK  459 (541)
Q Consensus       381 l~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~-d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~  459 (541)
                      ...+.+++.++.+|.||||+|+..|+.+++++|++++++++.. +..|.||||+|++.|+.+++++|+++|++++.+|..
T Consensus       145 ~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~  224 (255)
T d1oy3d_         145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG  224 (255)
T ss_dssp             CCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             hhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCC
Confidence            3446778889999999999999999999999999999998864 678999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhCCCC
Q 037006          460 NVSPMQIAECLHYAGISRILMHGGAT  485 (541)
Q Consensus       460 g~t~l~~A~~~~~~~i~~~Ll~~ga~  485 (541)
                      |+||||+|+..++.+++++|+++||.
T Consensus       225 g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         225 GRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             SCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999999999999996

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-36  Score=290.14  Aligned_cols=262  Identities=29%  Similarity=0.376  Sum_probs=233.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCC
Q 037006          207 CSTPLEAAAAAGEALIVELLLARKASTERSE-TSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRR  285 (541)
Q Consensus       207 ~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~  285 (541)
                      +.|+|+.|++.|+.++|++|+++|++++.++ ..|+||||+|+..|+.+++++|++.+...+..+..+.+|.++|+..+.
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCC
Confidence            5699999999999999999999999998765 479999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc----------ccCCCchhHHHHHcCCHHH
Q 037006          286 RDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIR----------NKSGKTAYDVAAECGHSRL  355 (541)
Q Consensus       286 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----------~~~g~t~l~~A~~~g~~~~  355 (541)
                      .+...++++...+....+ ..+.++++.|+..++...++.+++...+++..          +..|.||||+|+.+|+.  
T Consensus        85 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~--  161 (285)
T d1wdya_          85 VKLLKLFLSKGADVNECD-FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV--  161 (285)
T ss_dssp             HHHHHHHHHTTCCTTCBC-TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH--
T ss_pred             ccccchhhhhcccccccc-cCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCH--
Confidence            999999999987766555 77999999999999999999999887665433          44577887777766655  


Q ss_pred             HHHhhcCCchHHHHhhCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHhc----CCHHHHHHHHHcCCCCCCCCCCCChH
Q 037006          356 FDALKLGDSLCVAARKGEVRTMQRLIEA-GAAINGKDLHGWTALHRASFK----GKIEVVRMLIDKGIDVDAKDEDGYTA  430 (541)
Q Consensus       356 ~~~l~~~~~l~~a~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~Aa~~----g~~~~v~~Ll~~g~d~~~~d~~g~tp  430 (541)
                                         +++++|+++ |++++..+..|.++++.+...    +..+++++|+++|++++.+|..|.||
T Consensus       162 -------------------~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~  222 (285)
T d1wdya_         162 -------------------EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP  222 (285)
T ss_dssp             -------------------HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             -------------------HHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCc
Confidence                               457777765 899999999999888776543    34679999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHC-CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCCc
Q 037006          431 LHCAVESGHTDVTELLVKK-GADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQ  490 (541)
Q Consensus       431 L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~~~~~  490 (541)
                      ||+|++.|+.++|++|+++ |++++.+|.+|.||||+|+..|+.+++++|+++||+++..+
T Consensus       223 L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             cchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            9999999999999999985 99999999999999999999999999999999999988664

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-37  Score=284.19  Aligned_cols=218  Identities=27%  Similarity=0.378  Sum_probs=172.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCH
Q 037006          208 STPLEAAAAAGEALIVELLL-ARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRR  286 (541)
Q Consensus       208 ~t~L~~A~~~g~~~iv~~Ll-~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~  286 (541)
                      .+.|+.++..|+.+.++.++ +.+..++.+|..|+||||+|+..|+.+++++|+..+.+....+..+.+++++++..++.
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD   83 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccccc
Confidence            45666667777766664443 34456667777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchH
Q 037006          287 DCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLC  366 (541)
Q Consensus       287 ~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~  366 (541)
                      +++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+            
T Consensus        84 ~i~~~Ll~~~~d~~~~d-~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~------------  150 (223)
T d1uoha_          84 EIVKALLGKGAQVNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK------------  150 (223)
T ss_dssp             HHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH------------
T ss_pred             chhHHHhccCceeEeeC-CCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcc------------
Confidence            77777777777777666 66778888888888888888888888888778888888887777666554            


Q ss_pred             HHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHH
Q 037006          367 VAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELL  446 (541)
Q Consensus       367 ~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~L  446 (541)
                               ++++|.+.+.+++.+|..|+||||.|+..|+.++|++|+++|+|++.+|..|+||||+| ..|+.+++++|
T Consensus       151 ---------~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~L  220 (223)
T d1uoha_         151 ---------MIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRM  220 (223)
T ss_dssp             ---------HHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHH
T ss_pred             ---------hhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcc
Confidence                     36667788888888999999999999999999999999999999999999999999988 57899999998


Q ss_pred             HH
Q 037006          447 VK  448 (541)
Q Consensus       447 l~  448 (541)
                      ++
T Consensus       221 l~  222 (223)
T d1uoha_         221 VE  222 (223)
T ss_dssp             HC
T ss_pred             cC
Confidence            85

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.1e-37  Score=289.70  Aligned_cols=243  Identities=24%  Similarity=0.224  Sum_probs=174.7

Q ss_pred             CCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCc---ccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchH
Q 037006          167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVE---SQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGP  243 (541)
Q Consensus       167 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~  243 (541)
                      ...+++|.||||+||..|+.++|++|+++|+++.   .++.. |.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~-g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tp   81 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL-GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCC-CCCccchHHhhcccccccccccccccccccccccchh
Confidence            4567899999999999999999999999998744   44444 7788888888888888888888888888888888888


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHc-CCHHH
Q 037006          244 IHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASL-GYEQM  322 (541)
Q Consensus       244 L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~-g~~~~  322 (541)
                      ||+|+..++.+++++|++.+........   ............                  .....++...... .....
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~  140 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDAS---DTYLTQSQDCTP------------------DTSHAPAAVDSQPNPENEE  140 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------------------------
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccc---hhhhhHHhhhcc------------------cchHHHHHHHhhcchhHHH
Confidence            8888888888888888776543221111   000000000000                  0000111111111 11112


Q ss_pred             HHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCC-CCCCChHHHHH
Q 037006          323 VKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGK-DLHGWTALHRA  401 (541)
Q Consensus       323 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~-d~~g~t~L~~A  401 (541)
                      .......+.+++.++..|.||||+|+..++.++                     +++|++++++.+.. +..|.||||+|
T Consensus       141 ~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~---------------------v~~Ll~~~~~~~~~~~~~g~TpL~~A  199 (255)
T d1oy3d_         141 EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM---------------------VRLLRDAGADLNKPEPTCGRTPLHLA  199 (255)
T ss_dssp             ---CCCGGGGTTCCCTTSCCHHHHHHHTTCHHH---------------------HHHHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred             HHHhhhcCcccccccccCccccccccccccccc---------------------ccchhccccccccccccccccccccc
Confidence            222233466677888899999998887766544                     77788888888865 57899999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCC
Q 037006          402 SFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGAD  452 (541)
Q Consensus       402 a~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~  452 (541)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++||+
T Consensus       200 ~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         200 VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             ccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999999999997

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.2e-36  Score=291.18  Aligned_cols=261  Identities=27%  Similarity=0.327  Sum_probs=193.4

Q ss_pred             cHHHHHHH-cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCH
Q 037006          175 TLLHIAIA-QRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHL  253 (541)
Q Consensus       175 t~L~~A~~-~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~  253 (541)
                      ||||+|+. .|+.++++.|.+.+++....  ..|+||||+|+..|+.++|++|+.+                        
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~~--~~g~T~Lh~A~~~g~~~~v~~Ll~~------------------------   55 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIIDP--RHNRTVLHWIASNSSAEKSEDLIVH------------------------   55 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCCC--SSCCCHHHHHHCTTCCSCCTTHHHH------------------------
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCCC--CCCccHHHHHHHcCCHHHHHHHHhc------------------------
Confidence            55654333 34555555555555543322  1256666666666666666665531                        


Q ss_pred             HHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC---
Q 037006          254 EVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKG---  330 (541)
Q Consensus       254 ~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---  330 (541)
                       ..+.+++.|+++|.+|.+|+||||+|+..|+.+++++|+++|++++..+ ..|.|||+.|+..++.++++++...+   
T Consensus        56 -~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~-~~g~t~l~~a~~~~~~~~~~~l~~~~~~~  133 (277)
T d2fo1e1          56 -EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN-KSERSALHQAAANRDFGMMVYMLNSTKLK  133 (277)
T ss_dssp             -HHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-TTCCCHHHHHHHTTCHHHHHHHTTSHHHH
T ss_pred             -chhHHHHcCCCccccCCCCCeeecccccccccccccccccccccccccc-ccccccccchhhhcchhhhhhhhhccccc
Confidence             1144466778888888888888888888888888888888888887766 66888888888888888887776543   


Q ss_pred             CCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcC--------CCCCCCCCCCChHHHHHH
Q 037006          331 ANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG--------AAINGKDLHGWTALHRAS  402 (541)
Q Consensus       331 ~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g--------~~~~~~d~~g~t~L~~Aa  402 (541)
                      ..++..+..+.++.+.+...+..+...                  .+..+.+..        ...+..+..|+||||+++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~  195 (277)
T d2fo1e1         134 GDIEELDRNGMTALMIVAHNEGRDQVA------------------SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA  195 (277)
T ss_dssp             HTTSCCCTTSCCHHHHHHHSCSTTHHH------------------HHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHH
T ss_pred             ccccccccccchhHHHHHhcccccccc------------------cccccccccccccccccccccccccCCCCcccccc
Confidence            244556777778877777666543321                  122333322        224456778999999999


Q ss_pred             hcCCHHHHHHHH-HcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHh
Q 037006          403 FKGKIEVVRMLI-DKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMH  481 (541)
Q Consensus       403 ~~g~~~~v~~Ll-~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~  481 (541)
                      ..++.+++++++ ..+.+++.+|..|+||||+|++.|+.++|++|+++|+|++.+|..|+||||+|+..|+.+++++|++
T Consensus       196 ~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         196 QVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             SSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             ccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999998765 5689999999999999999999999999999999999999999999999999999999999999986

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2.2e-36  Score=291.77  Aligned_cols=241  Identities=28%  Similarity=0.347  Sum_probs=161.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHH
Q 037006          209 TPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDC  288 (541)
Q Consensus       209 t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~  288 (541)
                      |+|+.||..|+.++|++|+++|++++..+..|+||||+|+..|+.+++++|+++|++....+..+.+||++|+..++.++
T Consensus        42 t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~  121 (291)
T d1s70b_          42 AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDI  121 (291)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccch
Confidence            45555555555555555555555555555555555555555555555555555555555555555566666666666666


Q ss_pred             HHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHH
Q 037006          289 ARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQK-GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCV  367 (541)
Q Consensus       289 v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~  367 (541)
                      +++|+++|+..+..+ ..+.+++++|+..+..+.++.++.. +.+.......+..+.                       
T Consensus       122 ~~~l~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~-----------------------  177 (291)
T d1s70b_         122 AEYLISQGAHVGAVN-SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM-----------------------  177 (291)
T ss_dssp             HHHHHHTTCCTTCCC-TTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-----------------------
T ss_pred             hhcccccCccccccc-ccCccccccccccccchhccccccccccccccccccccccc-----------------------
Confidence            666666655555444 4556666666666666666655542 222111111000000                       


Q ss_pred             HHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHH
Q 037006          368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLV  447 (541)
Q Consensus       368 a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  447 (541)
                           .......+.....+....+..|.||||.|+..|+.+++++|++.|+|+|.++..|+||||+|+..|+.++|++|+
T Consensus       178 -----~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl  252 (291)
T d1s70b_         178 -----LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV  252 (291)
T ss_dssp             -----HHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             -----cccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                 112233344555566667889999999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhC
Q 037006          448 KKGADVEARTSKNVSPMQIAECLHYAGISRILMHG  482 (541)
Q Consensus       448 ~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~  482 (541)
                      ++|+|++.+|..|+||||+|++    +++++|.+.
T Consensus       253 ~~Gadv~~~d~~G~TaL~~A~e----~~~~~L~~~  283 (291)
T d1s70b_         253 ENLCDMEAVNKVGQTAFDVADE----DILGYLEEL  283 (291)
T ss_dssp             HTTCCTTCCCTTSCCTTTSCCS----GGGHHHHHH
T ss_pred             HCCCCCCCcCCCCCCHHHHHHH----HHHHHHHHH
Confidence            9999999999999999999974    566666643

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-35  Score=272.67  Aligned_cols=220  Identities=25%  Similarity=0.344  Sum_probs=166.1

Q ss_pred             hHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCcc--CCCCCCcHHHHHHHcC
Q 037006          242 GPIHLALRGGHLEVLKLLLIK-GANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIR--NARDGDTPLHITASLG  318 (541)
Q Consensus       242 t~L~~Aa~~g~~~iv~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~~g~t~L~~A~~~g  318 (541)
                      +|||+||..|+.++++.|++. +.+++.+|.+|+||||+|+..|+.+++++|+++|++++..  .+..|.+|+++++..+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            467777777777777666654 4566677777777777777777777777777777766533  2245777777777777


Q ss_pred             CHHHHHHHHHcCCCc--cccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCh
Q 037006          319 YEQMVKLLLQKGANK--YIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWT  396 (541)
Q Consensus       319 ~~~~v~~Ll~~g~~~--~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t  396 (541)
                      ..++++.++..+...  ...+..+.++++.++..++.                     +++++|++.|.+.+.++..|+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------~~~~~l~~~~~~~~~~~~~g~t  140 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF---------------------EVSQFLIENGASVRIKDKFNQI  140 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCH---------------------HHHHHHHHTTCCSCCCCTTSCC
T ss_pred             ccccccccccccccccccccccccccccccccccchh---------------------hhhhhhhhhcccccccCCCCCC
Confidence            777777777766543  34556667776666554443                     4466777888888888888888


Q ss_pred             HHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHH-CCCCCcccCCCCCCHHHHHHHcCcHH
Q 037006          397 ALHRASFKGKIEVVRMLIDKG-IDVDAKDEDGYTALHCAVESGHTDVTELLVK-KGADVEARTSKNVSPMQIAECLHYAG  474 (541)
Q Consensus       397 ~L~~Aa~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~  474 (541)
                      |||+|+..|+.+++++|++.| .+++.+|..|+||||+|+.+|+.++|++|++ .|++++.+|..|+||||+|+   +.+
T Consensus       141 ~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~  217 (229)
T d1ixva_         141 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQ  217 (229)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHH
T ss_pred             ccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHH
Confidence            999999999999999998886 6788888889999999999999999998886 48899988888999999887   357


Q ss_pred             HHHHHHhCCCC
Q 037006          475 ISRILMHGGAT  485 (541)
Q Consensus       475 i~~~Ll~~ga~  485 (541)
                      ++++|+++|+|
T Consensus       218 ~~~~Ll~~g~d  228 (229)
T d1ixva_         218 VKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHHHCCC
T ss_pred             HHHHHHHcCCC
Confidence            88899988886

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=4.2e-36  Score=287.32  Aligned_cols=260  Identities=24%  Similarity=0.293  Sum_probs=187.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-CCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHH
Q 037006          138 PVLVLLVKDGEMDDLREVLERSDPAWNPADSAD-AQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAA  216 (541)
Q Consensus       138 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~  216 (541)
                      |||+.+++.+..+.+.++|....     ++..| ..|+||||+||..|+.++|++|+.+.                    
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~-----~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~--------------------   56 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRES-----VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHE--------------------   56 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTT-----TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHH--------------------
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcC-----CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcc--------------------
Confidence            67777666554444545444433     33444 46999999999999999999987532                    


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCC
Q 037006          217 AGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANG  296 (541)
Q Consensus       217 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g  296 (541)
                            .+.+++.|++++.++..|+||||+|+..|+.+++++|+++|++++.+|.+|.|||++|+..++.++++++...+
T Consensus        57 ------~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  130 (277)
T d2fo1e1          57 ------AKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNST  130 (277)
T ss_dssp             ------HHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSH
T ss_pred             ------hhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcc
Confidence                  24556666666666666666666666666666666666666666666666677777777766666666665543


Q ss_pred             ---CCCCccCCCCCCcHHHHHHHcCCHH---HHHHHHHcCC--------CccccccCCCchhHHHHHcCCHHHHHHhhcC
Q 037006          297 ---ARPDIRNARDGDTPLHITASLGYEQ---MVKLLLQKGA--------NKYIRNKSGKTAYDVAAECGHSRLFDALKLG  362 (541)
Q Consensus       297 ---~~~~~~~~~~g~t~L~~A~~~g~~~---~v~~Ll~~g~--------~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~  362 (541)
                         ..++..+ ..+.++.+.+...+..+   .+..+.+...        ..+..+..|.|+|++++..++.+.+.+    
T Consensus       131 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~----  205 (277)
T d2fo1e1         131 KLKGDIEELD-RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY----  205 (277)
T ss_dssp             HHHHTTSCCC-TTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHH----
T ss_pred             cccccccccc-cccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcccccccccccccccc----
Confidence               2222232 44566666666655433   3333333321        234566788999999888777765432    


Q ss_pred             CchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHH
Q 037006          363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDV  442 (541)
Q Consensus       363 ~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~  442 (541)
                                      .+...+.+++.+|..|+||||+|+..|+.++|++|+++|+|+|.+|..|+||||+|+++|+.++
T Consensus       206 ----------------~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~i  269 (277)
T d2fo1e1         206 ----------------LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNI  269 (277)
T ss_dssp             ----------------HHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHH
T ss_pred             ----------------ccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence                            2567789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHC
Q 037006          443 TELLVKK  449 (541)
Q Consensus       443 v~~Ll~~  449 (541)
                      |++|++.
T Consensus       270 v~lL~~c  276 (277)
T d2fo1e1         270 VDIFDRC  276 (277)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            9999864

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.9e-35  Score=285.09  Aligned_cols=270  Identities=25%  Similarity=0.330  Sum_probs=220.7

Q ss_pred             cCCHHHHHHHHhcCCCCCCCC-----CCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCH
Q 037006          146 DGEMDDLREVLERSDPAWNPA-----DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEA  220 (541)
Q Consensus       146 ~g~~~~v~~ll~~~~~~~~~~-----~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~  220 (541)
                      ....+.++.++........+.     ...+..+.|+|+.||..|+.++|++|++.|++++..+.. |.||||+|+..|+.
T Consensus         8 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~-G~T~L~~A~~~g~~   86 (291)
T d1s70b_           8 QKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVD-GLTALHQACIDDNV   86 (291)
T ss_dssp             HHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTT-CCBHHHHHHHTTCH
T ss_pred             HhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCC-CCcHHHHHHhcCCc
Confidence            334566666655432211111     122345679999999999999999999999999998887 89999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCC-CCC
Q 037006          221 LIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANG-ARP  299 (541)
Q Consensus       221 ~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~  299 (541)
                      +++++|+++|++....+..+.+||+.|+..++.+++++|+++|+..+..|..+.+++++|+..++.++++.++... .++
T Consensus        87 eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~  166 (291)
T d1s70b_          87 DMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI  166 (291)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCH
T ss_pred             eeeeeecccccccccccccccccccccccccccchhhcccccCcccccccccCccccccccccccchhcccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999643 222


Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHH
Q 037006          300 DIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQR  379 (541)
Q Consensus       300 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~  379 (541)
                      ...        ...............+.....+....+..|.|||+.|+..|+.                     +++++
T Consensus       167 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~---------------------~~~~~  217 (291)
T d1s70b_         167 EAA--------RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT---------------------EVLKL  217 (291)
T ss_dssp             HHH--------HHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCH---------------------HHHHH
T ss_pred             ccc--------cccccccccccchhhhcccccccccccCCCCChhhHHHHcCCh---------------------hhhcc
Confidence            111        1111111223444555566667777888999999988876665                     45888


Q ss_pred             HHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHC
Q 037006          380 LIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKK  449 (541)
Q Consensus       380 Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  449 (541)
                      |+++|+++|.++.+|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|++    +++++|.+.
T Consensus       218 Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~~~~~L~~~  283 (291)
T d1s70b_         218 LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEEL  283 (291)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----GGGHHHHHH
T ss_pred             cccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----HHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999975    577776654

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-34  Score=268.30  Aligned_cols=220  Identities=26%  Similarity=0.378  Sum_probs=157.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCC---CCCCCCChHHHHHHHhC
Q 037006          209 TPLEAAAAAGEALIVELLLAR-KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVN---ALTKDGNTALHLAVEDR  284 (541)
Q Consensus       209 t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~---~~d~~g~t~L~~A~~~g  284 (541)
                      +|||+||..|+.++++.|++. +.+++.++.+|+||||+|+..|+.+++++|+++|++++   ..+..|.+|+++++..+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            455555555555555544442 34455555556666666666666666666666665554   34556677777777777


Q ss_pred             CHHHHHHHHHCCCCCCcc-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCC
Q 037006          285 RRDCARLLLANGARPDIR-NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGD  363 (541)
Q Consensus       285 ~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~  363 (541)
                      ..++++.++..+...+.. ....+.|+++.++..++.+++++|++.|.+.+..+..|+||+|+|+..|+.++        
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~--------  153 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL--------  153 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHH--------
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccc--------
Confidence            777777777766554332 22456777777777778888888888777777777778888777776665543        


Q ss_pred             chHHHHhhCCHHHHHHHHHcC-CCCCCCCCCCChHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHH
Q 037006          364 SLCVAARKGEVRTMQRLIEAG-AAINGKDLHGWTALHRASFKGKIEVVRMLIDK-GIDVDAKDEDGYTALHCAVESGHTD  441 (541)
Q Consensus       364 ~l~~a~~~~~~~~~~~Ll~~g-~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpL~~A~~~g~~~  441 (541)
                                   +++|++.+ .+++.+|.+|+||||+|+.+|+.++|++|+++ |+|++.+|..|+||||+|+.   .+
T Consensus       154 -------------~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~  217 (229)
T d1ixva_         154 -------------IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQ  217 (229)
T ss_dssp             -------------HHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HH
T ss_pred             -------------cccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HH
Confidence                         56666665 57888899999999999999999999999974 99999999999999999874   58


Q ss_pred             HHHHHHHCCCC
Q 037006          442 VTELLVKKGAD  452 (541)
Q Consensus       442 ~v~~Ll~~ga~  452 (541)
                      ++++|+++|+|
T Consensus       218 ~~~~Ll~~g~d  228 (229)
T d1ixva_         218 VKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHHHCCC
T ss_pred             HHHHHHHcCCC
Confidence            99999999987

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3e-31  Score=244.11  Aligned_cols=216  Identities=30%  Similarity=0.400  Sum_probs=147.2

Q ss_pred             CchHHHHHHhcCCHHHHHHHH----HcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHH
Q 037006          240 TWGPIHLALRGGHLEVLKLLL----IKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITA  315 (541)
Q Consensus       240 ~~t~L~~Aa~~g~~~iv~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~  315 (541)
                      |+||||+|+..|+.++++.|+    +.|++++..|.+|+||||+|+..|+.+++++|+++|++.+... ..+.++++.|.
T Consensus         3 G~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~-~~~~~~~~~a~   81 (228)
T d1k1aa_           3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD-RHGQTAAHLAC   81 (228)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccc-ccccccccccc
Confidence            445555555555555444444    2456666666666666666666666666666666666665554 45566666666


Q ss_pred             HcCCHHHHHHHHHcCCC----ccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCC-CC
Q 037006          316 SLGYEQMVKLLLQKGAN----KYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAIN-GK  390 (541)
Q Consensus       316 ~~g~~~~v~~Ll~~g~~----~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~-~~  390 (541)
                      ..++.++++.+......    .+.......++++.+......                     ...+.|.....+.. ..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------~~~~~l~~~~~~~~~~~  140 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ---------------------ETVQLLLERGADIDAVD  140 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCH---------------------HHHHHHHHTTCCTTCCC
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccc---------------------hhhhhhhcccccccccc
Confidence            66666666555543221    223334445555554443333                     33444555544433 33


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHc
Q 037006          391 DLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECL  470 (541)
Q Consensus       391 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  470 (541)
                      ...|.++|+.|+..+..++++++++.|.+++.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..
T Consensus       141 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~  220 (228)
T d1k1aa_         141 IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR  220 (228)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSH
T ss_pred             ccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhC
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CcHHHHH
Q 037006          471 HYAGISR  477 (541)
Q Consensus       471 ~~~~i~~  477 (541)
                      |+.+++|
T Consensus       221 ~~~divk  227 (228)
T d1k1aa_         221 RVIDILR  227 (228)
T ss_dssp             HHHHHHT
T ss_pred             CCccccC
Confidence            8888874

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=2e-31  Score=243.51  Aligned_cols=204  Identities=32%  Similarity=0.406  Sum_probs=134.4

Q ss_pred             HHHHHHHHcCCCCCC-CCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 037006          254 EVLKLLLIKGANVNA-LTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGAN  332 (541)
Q Consensus       254 ~iv~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  332 (541)
                      |+|++|+++|++++. .|.+|.||||+||..|+.+++++|++.|++++..+ ..+.++++.++..++.............
T Consensus         3 ~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           3 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQD-NTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccc-cccccccccccccccccccccccccccc
Confidence            555666666666554 35556666666666666666666666666665554 4555666666665555554444443322


Q ss_pred             -ccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHH
Q 037006          333 -KYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVR  411 (541)
Q Consensus       333 -~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~  411 (541)
                       .......+.++.+.+........                     .+.|...+++++.++..|+|||++++.++..++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~  140 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGM---------------------VEDLITADADINAADNSGKTALHWAAAVNNTEAVN  140 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTH---------------------HHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             ccccccccccccccccccccchhh---------------------hhhhhhhcccccccCCCCCCcchhhcccCcceeee
Confidence             22334445555555555444333                     44456666777777777777777777777888888


Q ss_pred             HHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHH
Q 037006          412 MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL  479 (541)
Q Consensus       412 ~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  479 (541)
                      .+++.+.+++..|..|.||||+|+..|+.++|++|+++|+|++.+|..|+||||+|++.|+.++|++|
T Consensus       141 ~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         141 ILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeccccccccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            88888777777777888888888888888888888888888877777788888888888888888765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=3.4e-31  Score=241.95  Aligned_cols=206  Identities=30%  Similarity=0.320  Sum_probs=191.8

Q ss_pred             HHHHHHHHHCCCCCCC-CCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCC
Q 037006          220 ALIVELLLARKASTER-SETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGAR  298 (541)
Q Consensus       220 ~~iv~~Ll~~g~~~~~-~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  298 (541)
                      .|+|++|+++|++++. .|..|.||||+||..|+.+++++|++.|++++..+..+.++++.++..++.............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            4899999999999987 588999999999999999999999999999999999999999999999999988888877666


Q ss_pred             CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHH
Q 037006          299 PDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQ  378 (541)
Q Consensus       299 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~  378 (541)
                      ........+.++.+.+.........+.|.+.+++++..+..|+||+++++..+..+                     +++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~---------------------~~~  140 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTE---------------------AVN  140 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH---------------------HHH
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcce---------------------eee
Confidence            66556577899999999999999999999999999999999999999988776654                     478


Q ss_pred             HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHH
Q 037006          379 RLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELL  446 (541)
Q Consensus       379 ~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~L  446 (541)
                      .+++.+.+++..|..|.||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+++|+.++|++|
T Consensus       141 ~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         141 ILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeccccccccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            89999999999999999999999999999999999999999999999999999999999999999986

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-30  Score=239.49  Aligned_cols=217  Identities=30%  Similarity=0.362  Sum_probs=131.6

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHh----cCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHH
Q 037006          172 QGQTLLHIAIAQRRPDIVQLLLE----FGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLA  247 (541)
Q Consensus       172 ~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A  247 (541)
                      +|+||||+||..|+.++|++|++    .|++++..+.. |.||||+|+..|+.+++++|+++|++.+.....+.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~-g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCC-CCccceehhcccccccccccccccccccccccccccccccc
Confidence            46777777777777777766653    45555555443 55555555555555555555555555555555555555555


Q ss_pred             HhcCCHHHHHHHHHcCC----CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHH
Q 037006          248 LRGGHLEVLKLLLIKGA----NVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMV  323 (541)
Q Consensus       248 a~~g~~~iv~~Ll~~g~----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v  323 (541)
                      ...++.++++.+.....    ..+.....                                  ..++|+.+.........
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~l~~~~~~~~~~~~  126 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYD----------------------------------GLTALHVAVNTECQETV  126 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTT----------------------------------SCCHHHHHHHHTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccc----------------------------------cccccccccccccchhh
Confidence            55555555554444321    11222233                                  44555555555555555


Q ss_pred             HHHHHcCCCcc-ccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHH
Q 037006          324 KLLLQKGANKY-IRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRAS  402 (541)
Q Consensus       324 ~~Ll~~g~~~~-~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa  402 (541)
                      +.|.....+.. .....+.++++.|+..+...+                     +++++++|.+++.+|..|.||||+|+
T Consensus       127 ~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~---------------------~~~~~~~~~~~~~~d~~g~t~L~~A~  185 (228)
T d1k1aa_         127 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSM---------------------VQLLLQHGANVNAQMYSGSSALHSAS  185 (228)
T ss_dssp             HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH---------------------HHHHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred             hhhhccccccccccccchhhHHHHHHHhhhhhh---------------------hhhhhhhccccccccccCcchHHHHH
Confidence            55554443322 233445555555555544433                     44455566666777777888888888


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHH
Q 037006          403 FKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTE  444 (541)
Q Consensus       403 ~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~  444 (541)
                      ..|+.+++++|+++|+|+|.+|..|+||||+|+++|+.++||
T Consensus       186 ~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         186 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            888888888888888888888888888888888888888774

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.7e-32  Score=248.02  Aligned_cols=197  Identities=31%  Similarity=0.399  Sum_probs=146.0

Q ss_pred             CchHHHHHHhcCCH----HHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHH
Q 037006          240 TWGPIHLALRGGHL----EVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITA  315 (541)
Q Consensus       240 ~~t~L~~Aa~~g~~----~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~  315 (541)
                      |.||||+|+..|+.    ++++++...|+++|..|.+|+||||+|+..|+.+++++|++.|++++..+ ..|.|||+.|+
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d-~~g~t~l~~~~   80 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRD-FRGNTPLHLAC   80 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCC-TTCCCHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccccc-ccccccccccc
Confidence            56666666666664    33444555566777777777777777777777777777777777776655 56777777777


Q ss_pred             HcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCC
Q 037006          316 SLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGW  395 (541)
Q Consensus       316 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~  395 (541)
                      ..++.++++.|++.+.......                                                ..+.....|.
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~------------------------------------------------~~~~~~~~~~  112 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHS------------------------------------------------ILKATNYNGH  112 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSC------------------------------------------------GGGCCCTTCC
T ss_pred             ccccccccchhhhhcccccccc------------------------------------------------cccccccccc
Confidence            7777777777776654422110                                                1122345688


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHH
Q 037006          396 TALHRASFKGKIEVVRMLIDKGIDVDAKD-EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAG  474 (541)
Q Consensus       396 t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  474 (541)
                      ||||.|+..++.+++++|++.|++++..+ .+|+||||+|++.|+.+++++|+++|+|++.+|.+|+||||+|+..++.+
T Consensus       113 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~  192 (221)
T d1iknd_         113 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTR  192 (221)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHH
T ss_pred             hhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHH
Confidence            99999999999999999999998888765 46999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCC
Q 037006          475 ISRILMHGGAT  485 (541)
Q Consensus       475 i~~~Ll~~ga~  485 (541)
                      ++++|++.+.+
T Consensus       193 ~~~~l~~~~~~  203 (221)
T d1iknd_         193 IQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHTTSCG
T ss_pred             HHHHHHHcCCc
Confidence            99999987665

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-30  Score=238.38  Aligned_cols=187  Identities=26%  Similarity=0.332  Sum_probs=147.7

Q ss_pred             CCccHHHHHHHcCCH----HHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHH
Q 037006          172 QGQTLLHIAIAQRRP----DIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLA  247 (541)
Q Consensus       172 ~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A  247 (541)
                      +|.||||+|+..|+.    ++++++...|++++.++.. |.||||+|+..|+.+++++|++.|++++..+..|.|||++|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~-g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTT-CCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCC-CCccccccccccccccccccccccccccccccccccccccc
Confidence            478888888888885    4555666678888877775 88888888888888888888888888888888888888888


Q ss_pred             HhcCCHHHHHHHHHcCCCCC------CCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHH
Q 037006          248 LRGGHLEVLKLLLIKGANVN------ALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQ  321 (541)
Q Consensus       248 a~~g~~~iv~~Ll~~g~~~~------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~  321 (541)
                      +..|+.++++.|++.+.+..      .....|.|||+.|+..++.+++++|+..|+.++..++..|.||||+|+..|+.+
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~  159 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD  159 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHH
Confidence            88888888888888765433      234567888888888888888888888888888777677888888888888888


Q ss_pred             HHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHh
Q 037006          322 MVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL  359 (541)
Q Consensus       322 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l  359 (541)
                      ++++|+++|+|++.+|..|+||||+|+..++.++++.|
T Consensus       160 ~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l  197 (221)
T d1iknd_         160 LVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL  197 (221)
T ss_dssp             HHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHH
T ss_pred             HHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            88888888888888888888888888877776664443

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=3.9e-31  Score=260.47  Aligned_cols=228  Identities=15%  Similarity=0.090  Sum_probs=147.5

Q ss_pred             CCcHHHHHHHcCCHHHHHH---HHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCC--CCCChHHHHHH
Q 037006          207 CSTPLEAAAAAGEALIVEL---LLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALT--KDGNTALHLAV  281 (541)
Q Consensus       207 ~~t~L~~A~~~g~~~iv~~---Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d--~~g~t~L~~A~  281 (541)
                      |.|||++|+.+|+.+++++   |++.|++++..+..|+||||+||..||.++|++|++.|++++..+  .+|.||||+|+
T Consensus        90 ~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa  169 (346)
T d2ajaa1          90 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAA  169 (346)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHH
T ss_pred             CCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHH
Confidence            7788889999998877665   688888888888888999999999999999999999988887765  45889999999


Q ss_pred             HhCCHHHHHHHHHCCCCCCcc--CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHHHHHHh
Q 037006          282 EDRRRDCARLLLANGARPDIR--NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL  359 (541)
Q Consensus       282 ~~g~~~~v~~Ll~~g~~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l  359 (541)
                      ..|+.++|++|++.|++....  ...++.||++.|+.+|+.+++++|++.|++++..+..       ++..++..+..++
T Consensus       170 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~-------~~~~~~~~~~~~~  242 (346)
T d2ajaa1         170 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH-------EFEYGEKYVNPFI  242 (346)
T ss_dssp             HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHC-------TTTTTTTTHHHHH
T ss_pred             HHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHH-------HHHcCcHhhhHHH
Confidence            999999999999988765321  1134667888888889999999999888876543333       2233333332221


Q ss_pred             hcCCchHHHHhhCCHHHHHHHHHcCC--CCCCCC-------CCCChHHHHHHhcCCHHHHHHHHHcCCC-----CCCCCC
Q 037006          360 KLGDSLCVAARKGEVRTMQRLIEAGA--AINGKD-------LHGWTALHRASFKGKIEVVRMLIDKGID-----VDAKDE  425 (541)
Q Consensus       360 ~~~~~l~~a~~~~~~~~~~~Ll~~g~--~~~~~d-------~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d-----~~~~d~  425 (541)
                             .+...+..+....+.....  ..+..+       ..+.++|+.|+..|+.+++++|++.+..     .+..+.
T Consensus       243 -------~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~  315 (346)
T d2ajaa1         243 -------ARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG  315 (346)
T ss_dssp             -------HHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTT
T ss_pred             -------HHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCC
Confidence                   1111111111111111111  111111       1234667777777777777777766532     334445


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHH
Q 037006          426 DGYTALHCAVESGHTDVTELLVK  448 (541)
Q Consensus       426 ~g~tpL~~A~~~g~~~~v~~Ll~  448 (541)
                      +|+||||+|++.|+.++|++||+
T Consensus       316 ~g~T~LhlA~~~Gn~e~v~lLL~  338 (346)
T d2ajaa1         316 DANELLRLALRLGNQGACALLLS  338 (346)
T ss_dssp             CCCHHHHHHHHHTCTTHHHHHTT
T ss_pred             CCCcHHHHHHHcCcHHHHHHHhC
Confidence            67777777777777777777765

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=1.6e-30  Score=256.07  Aligned_cols=264  Identities=12%  Similarity=0.050  Sum_probs=188.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHH
Q 037006          175 TLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLE  254 (541)
Q Consensus       175 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~  254 (541)
                      ..++.+...+..++.++|...+++.+..... ..++++                      .++..|.|||++||..|+.+
T Consensus        48 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~----------------------~~~~~~~t~L~~Aa~~g~~~  104 (346)
T d2ajaa1          48 IHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQ-LWSDAH----------------------KKGIKSEVICFVAAITGCSS  104 (346)
T ss_dssp             HHHCCCCSSHHHHHHHHHHHHHHHTTTTCTT-HHHHHH----------------------HHTCCHHHHHHHHHHHCCHH
T ss_pred             HHHHHHhhccHHHHHHHHHHcchhhccchhh-hhhHHH----------------------hccCCCCcHHHHHHHhCCHH
Confidence            4444454555567777777776655543322 222222                      24567899999999999988


Q ss_pred             HHHH---HHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHHcC
Q 037006          255 VLKL---LLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNA-RDGDTPLHITASLGYEQMVKLLLQKG  330 (541)
Q Consensus       255 iv~~---Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g  330 (541)
                      ++++   |++.|++++..|.+|+||||+|+..|+.++|++|++.|++++..+. .+|.||||+|+..|+.++|++|++.|
T Consensus       105 ~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~  184 (346)
T d2ajaa1         105 ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA  184 (346)
T ss_dssp             HHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSC
T ss_pred             HHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcC
Confidence            7766   7889999999999999999999999999999999999999987642 35899999999999999999999999


Q ss_pred             CCcc---ccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCC-------CCCCChHHHH
Q 037006          331 ANKY---IRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGK-------DLHGWTALHR  400 (541)
Q Consensus       331 ~~~~---~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~-------d~~g~t~L~~  400 (541)
                      ++..   ..+..+.||++.|+.+|+.++                     +++|++.|++++..       ...+.++++.
T Consensus       185 ~~~~~~~~~~~~~~t~l~~A~~~g~~~i---------------------v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d2ajaa1         185 PTEATAMIQAENYYAFRWAAVGRGHHNV---------------------INFLLDCPVMLAYAEIHEFEYGEKYVNPFIA  243 (346)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHSTTCCHHH---------------------HHHHTTSHHHHHHHHHCTTTTTTTTHHHHHH
T ss_pred             CcccccccccCCCcchhhHHhhcCHHHH---------------------HHHHHhCCCCcchHHHHHHHcCcHhhhHHHH
Confidence            8653   344556677777777777666                     45555555443321       2334456666


Q ss_pred             HHhcCCHHHHHHHHHcCCC--CCCCCC-------CCChHHHHHHHcCCHHHHHHHHHCCCC-----CcccCCCCCCHHHH
Q 037006          401 ASFKGKIEVVRMLIDKGID--VDAKDE-------DGYTALHCAVESGHTDVTELLVKKGAD-----VEARTSKNVSPMQI  466 (541)
Q Consensus       401 Aa~~g~~~~v~~Ll~~g~d--~~~~d~-------~g~tpL~~A~~~g~~~~v~~Ll~~ga~-----~~~~~~~g~t~l~~  466 (541)
                      +...+..+....+.....+  .+..+.       .+.++|+.|+..|+.+++++|++.|+.     .+..+.+|+||||+
T Consensus       244 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lhl  323 (346)
T d2ajaa1         244 RHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL  323 (346)
T ss_dssp             HHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHH
T ss_pred             HhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHH
Confidence            6655555554444433222  222222       235788999999999999999998754     34455679999999


Q ss_pred             HHHcCcHHHHHHHHhC
Q 037006          467 AECLHYAGISRILMHG  482 (541)
Q Consensus       467 A~~~~~~~i~~~Ll~~  482 (541)
                      |++.|+.+++++||+.
T Consensus       324 A~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         324 ALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHTCTTHHHHHTTS
T ss_pred             HHHcCcHHHHHHHhCC
Confidence            9999999999999963

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.2e-27  Score=204.72  Aligned_cols=106  Identities=29%  Similarity=0.461  Sum_probs=50.0

Q ss_pred             HHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCC-CCccc
Q 037006          378 QRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGA-DVEAR  456 (541)
Q Consensus       378 ~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga-~~~~~  456 (541)
                      ++|+++|++++..+..|.++|+.++..++.+.+++|++.+.+++..|..|.+|||+|+..++.+++++|+++|+ +++.+
T Consensus        50 ~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  129 (156)
T d1ihba_          50 RRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR  129 (156)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC
T ss_pred             ccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            33334444444444444444444444444444444444444444444444444444444444444444444443 44444


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhCC
Q 037006          457 TSKNVSPMQIAECLHYAGISRILMHGG  483 (541)
Q Consensus       457 ~~~g~t~l~~A~~~~~~~i~~~Ll~~g  483 (541)
                      |..|+||||+|+..++.+++++|+++|
T Consensus       130 d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         130 NHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            444444444444444444444444443

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.5e-27  Score=204.46  Aligned_cols=153  Identities=29%  Similarity=0.389  Sum_probs=143.7

Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHH
Q 037006          275 TALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR  354 (541)
Q Consensus       275 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~  354 (541)
                      +|||+|+..|+.++|++|+++|++++..+ ..|.||||+|+ .|+.+++++|+++|++++..+..+.++++.++..++..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d-~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQN-GFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCC-TTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccC-Ccccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            89999999999999999999999999887 78999999886 78999999999999999999999999998887766654


Q ss_pred             HHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCChHHHH
Q 037006          355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGI-DVDAKDEDGYTALHC  433 (541)
Q Consensus       355 ~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-d~~~~d~~g~tpL~~  433 (541)
                                           .++.|++.+.+++..+..|.+|||+|+..++.+++++|+++|. +++.+|..|+||||+
T Consensus        81 ---------------------~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~  139 (156)
T d1ihba_          81 ---------------------TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL  139 (156)
T ss_dssp             ---------------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred             ---------------------cccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHH
Confidence                                 4777899999999999999999999999999999999999986 899999999999999


Q ss_pred             HHHcCCHHHHHHHHHCC
Q 037006          434 AVESGHTDVTELLVKKG  450 (541)
Q Consensus       434 A~~~g~~~~v~~Ll~~g  450 (541)
                      |++.|+.+++++|+++|
T Consensus       140 A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         140 ARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHTTCHHHHHHHHHTC
T ss_pred             HHHcCCHHHHHHHHhcC
Confidence            99999999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-26  Score=199.50  Aligned_cols=150  Identities=29%  Similarity=0.404  Sum_probs=114.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHc-CCCccccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCC
Q 037006          310 PLHITASLGYEQMVKLLLQK-GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAIN  388 (541)
Q Consensus       310 ~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~  388 (541)
                      .|+.|+..|+.++|+.|++. +++++..|..|+||||+|+. |+                     .+++++|++++.+++
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~---------------------~~~v~~Ll~~~~~~~   62 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GS---------------------TAIALELLKQGASPN   62 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TC---------------------HHHHHHHHHTTCCTT
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-cc---------------------ccccccccccccccc
Confidence            46777777777777777664 56777777777777766542 33                     344666777777777


Q ss_pred             CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHH
Q 037006          389 GKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE  468 (541)
Q Consensus       389 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  468 (541)
                      ..+..|.+|++.++..++.+++++++++|+++|.+|..|.||||+|+..|+.+++++|+ .|++++.+|..|+||||+|+
T Consensus        63 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~  141 (156)
T d1bd8a_          63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELAL  141 (156)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHH
Confidence            77777888888888888888888888888888888888888888888888888888776 67888888888888888888


Q ss_pred             HcCcHHHHHHHHhC
Q 037006          469 CLHYAGISRILMHG  482 (541)
Q Consensus       469 ~~~~~~i~~~Ll~~  482 (541)
                      ..|+.+++++|+++
T Consensus       142 ~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         142 QRGAQDLVDILQGH  155 (156)
T ss_dssp             HSCCHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHhh
Confidence            88888888888765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=7.1e-26  Score=195.43  Aligned_cols=149  Identities=34%  Similarity=0.453  Sum_probs=90.8

Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCchhHHHHHcCCHH
Q 037006          275 TALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR  354 (541)
Q Consensus       275 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~g~~~  354 (541)
                      |||+.|++.|+.++|++||++|++++ .+ ..|.||||+|+..++.++++.++.....                      
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~-~~g~t~L~~a~~~~~~~~~~~~~~~~~~----------------------   59 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TD-WLGTSPLHLAAQYGHFSTTEVLLRAGVS----------------------   59 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CC-TTCCCHHHHHHHHTCHHHHHHHHTTTCC----------------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cc-cCCCcccccccccccccccccccccccc----------------------
Confidence            55555555555555555555555544 22 4455555555555555555555544433                      


Q ss_pred             HHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHH
Q 037006          355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCA  434 (541)
Q Consensus       355 ~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A  434 (541)
                                                      ....+..+.++++.++...+.+++++++.+|++++.+|..|+||||+|
T Consensus        60 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A  107 (153)
T d1awcb_          60 --------------------------------RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWA  107 (153)
T ss_dssp             --------------------------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             --------------------------------ccccccccccccccccccccceeeecccccCCccccccccCchHHHhh
Confidence                                            333444555666666666666666666666666666666666666666


Q ss_pred             HHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHH
Q 037006          435 VESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL  479 (541)
Q Consensus       435 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  479 (541)
                      +..|+.+++++|+++|++++.+|.+|.|||++|+..|+.+++++|
T Consensus       108 ~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         108 TEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            666666666666666666666666666666666666666666654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=194.91  Aligned_cols=150  Identities=24%  Similarity=0.338  Sum_probs=78.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC
Q 037006          139 VLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAG  218 (541)
Q Consensus       139 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g  218 (541)
                      .|+.||..|+.+.|++|++....   .++..|..|+||||+|+ .|+.++|++|++.+.+++..+.. +.+|++.|+..+
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~---~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~-~~~~l~~~~~~~   79 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELV---HPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTS-GTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC---CTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCC---CCCccCCCCCccccccc-ccccccccccccccccccccccc-cccccccccccc
Confidence            35555555555555555554322   13444555555555554 24555555555555555544443 455555555555


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHH
Q 037006          219 EALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLA  294 (541)
Q Consensus       219 ~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~  294 (541)
                      +.+++++++++|++++..+..|+||||+|+..|+.+++++|+ .|++++.+|.+|+||||+|+..|+.+++++|++
T Consensus        80 ~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_          80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            555555555555555555555555555555555555555444 345555555555555555555555555555544

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.2e-25  Score=194.03  Aligned_cols=150  Identities=28%  Similarity=0.364  Sum_probs=117.6

Q ss_pred             ccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCH
Q 037006          174 QTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHL  253 (541)
Q Consensus       174 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~  253 (541)
                      .||||.||+.|+.++|++||++|++++ .+. .|.||||+|+..++.++++.++............+.++++.++...+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~-~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDW-LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCT-TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-ccc-CCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            478888888888888888888888765 333 377888888888888888888877777766677777788888888888


Q ss_pred             HHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q 037006          254 EVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLL  326 (541)
Q Consensus       254 ~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  326 (541)
                      +++++++..|++++.+|.+|+||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+.+|+.+++++|
T Consensus        81 ~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d-~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS-KFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccC-CCCCCHHHHHHHcCCHHHHHhC
Confidence            88888888888888888888888888888888888888888888887766 6788888888888888887765

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=4.2e-26  Score=220.02  Aligned_cols=192  Identities=16%  Similarity=0.146  Sum_probs=117.1

Q ss_pred             cCCCCCCC-CCCCChHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCC-------HHHHHHHHHcCCCc
Q 037006          262 KGANVNAL-TKDGNTALHLAVEDRRRDCARLLLANGARPDIRNARDGDTPLHITASLGY-------EQMVKLLLQKGANK  333 (541)
Q Consensus       262 ~g~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~-------~~~v~~Ll~~g~~~  333 (541)
                      .++++|.. |.+|+||||+||..|+.++|++|+++|++++.++ ..|+||||.|+..++       .++++++.   ...
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d-~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~  170 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD-NMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCL  170 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCC-TTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGG
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCC-cccccHHHHhhhcccchhhhhHHHHHHHHh---hhh
Confidence            35566644 6667777777777777777777777777776665 557777777776543       23444443   235


Q ss_pred             cccccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCC-CCCCCCChHHHHHHhcCCHHHHH-
Q 037006          334 YIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAIN-GKDLHGWTALHRASFKGKIEVVR-  411 (541)
Q Consensus       334 ~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~Aa~~g~~~~v~-  411 (541)
                      ...|..|+||||+++..+....         ...+++.....++.++...+.... .....+.++++.+........+. 
T Consensus       171 ~~~d~~g~t~lh~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (301)
T d1sw6a_         171 ILEDSMNRTILHHIIITSGMTG---------CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILEN  241 (301)
T ss_dssp             GEECTTCCCHHHHHHHHHTSTT---------CHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHH
T ss_pred             hhcccccCCHHHHHHHHhCccc---------cHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHH
Confidence            5667778888887765443211         111111112234566666654433 33455566666665554433333 


Q ss_pred             ----HHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHH
Q 037006          412 ----MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE  468 (541)
Q Consensus       412 ----~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  468 (541)
                          .++.  ..+|.+|..|+||||+|++.|+.++|++|+++||+++.+|..|+|||++|+
T Consensus       242 ~~~~~~~~--~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         242 LDLKWIIA--NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CSHHHHHH--HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HhhHHHHh--cCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence                2223  347889999999999999999999999999999999999999999999985

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.4e-25  Score=214.68  Aligned_cols=194  Identities=15%  Similarity=0.161  Sum_probs=103.1

Q ss_pred             cCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCH-------HHHHHHHHcCCCCC
Q 037006          195 FGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHL-------EVLKLLLIKGANVN  267 (541)
Q Consensus       195 ~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~-------~iv~~Ll~~g~~~~  267 (541)
                      .+.+++...+..|.||||+|+..|+.++|++|+++|++++..+..|+||||.|+..++.       ++++++.   ..++
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~  171 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLI  171 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGG
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhh
Confidence            34445443222255566666666666666666665555555555555555555554431       2222222   2233


Q ss_pred             CCCCCCChHHHHHHHhCC----HHHHHHHHHCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCc
Q 037006          268 ALTKDGNTALHLAVEDRR----RDCARLLLANGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGAN-KYIRNKSGKT  342 (541)
Q Consensus       268 ~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t  342 (541)
                      ..|..|+||||+++..+.    ..+++++                          ...++.++.+.+.. .......+.+
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~~~~~~~~~~~  225 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYY--------------------------LDILMGWIVKKQNRPIQSGTNEKES  225 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHH--------------------------HHHHHHHHHHGGGCCEEEC------
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHH--------------------------HHHHHHHHHhcCCcchhcccccccc
Confidence            444555555555543221    1111111                          11244555555433 2333444555


Q ss_pred             hhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCC
Q 037006          343 AYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA  422 (541)
Q Consensus       343 ~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~  422 (541)
                      +++.+...........+                .+.+++..  .+|.+|.+|+||||+|++.|+.++|++|+++|+|++.
T Consensus       226 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~--~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~  287 (301)
T d1sw6a_         226 KPNDKNGERKDSILENL----------------DLKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI  287 (301)
T ss_dssp             ----------CHHHHHC----------------SHHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTC
T ss_pred             hhHHHHhcchHHHHHHH----------------hhHHHHhc--CccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            55555444333332221                02233333  3788999999999999999999999999999999999


Q ss_pred             CCCCCChHHHHHH
Q 037006          423 KDEDGYTALHCAV  435 (541)
Q Consensus       423 ~d~~g~tpL~~A~  435 (541)
                      +|..|.|||++|+
T Consensus       288 ~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         288 ANKSGLRPVDFGA  300 (301)
T ss_dssp             CCTTSCCGGGGTC
T ss_pred             CCCCCCCHHHHcC
Confidence            9999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.9e-25  Score=181.51  Aligned_cols=118  Identities=26%  Similarity=0.374  Sum_probs=108.4

Q ss_pred             chHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC-hHHHHHHHcCCHHH
Q 037006          364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGY-TALHCAVESGHTDV  442 (541)
Q Consensus       364 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~-tpL~~A~~~g~~~~  442 (541)
                      .++.|+..|+.+++++|+++|+++|.++..|.||||.|+ .|+.+++++|+++|++++.++..|. ||||+|++.|+.++
T Consensus         6 ~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~   84 (125)
T d1bi7b_           6 WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDT   84 (125)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence            355566667777799999999999999999999999775 7999999999999999999999876 69999999999999


Q ss_pred             HHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhC
Q 037006          443 TELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHG  482 (541)
Q Consensus       443 v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~  482 (541)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|++.
T Consensus        85 v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          85 LVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             HHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             cccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999999999999999999999999999999863

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-24  Score=180.31  Aligned_cols=120  Identities=32%  Similarity=0.398  Sum_probs=90.6

Q ss_pred             CccHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCc-hHHHHHHhcC
Q 037006          173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPLEAAAAAGEALIVELLLARKASTERSETSTW-GPIHLALRGG  251 (541)
Q Consensus       173 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~-t~L~~Aa~~g  251 (541)
                      +.++||+|+..|+.++|++|+++|++++.++.. |.||||+|+ .|+.+++++|+++|++++..+..+. ||||+|+..|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~-g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSY-GRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSS-SCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcccccccc-ccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            456788888888888888888888877777665 777777654 5777777777777777777766665 4777777777


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHH
Q 037006          252 HLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDCARLLLA  294 (541)
Q Consensus       252 ~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~  294 (541)
                      +.+++++|+++|++++.+|..|+||||+|++.|+.+++++|++
T Consensus        81 ~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            7777777777777777777777777777777777777777764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=3e-25  Score=181.94  Aligned_cols=103  Identities=27%  Similarity=0.457  Sum_probs=85.7

Q ss_pred             hHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHH
Q 037006          365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTE  444 (541)
Q Consensus       365 l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~  444 (541)
                      +..|++.|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+.+|+.++++
T Consensus         6 L~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~   85 (118)
T d1myoa_           6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVK   85 (118)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhhhh
Confidence            44555566666688888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHCCCCCcccCCCCCCHHHHH
Q 037006          445 LLVKKGADVEARTSKNVSPMQIA  467 (541)
Q Consensus       445 ~Ll~~ga~~~~~~~~g~t~l~~A  467 (541)
                      +|+++|+|++.+|..|+||||+|
T Consensus        86 ~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          86 LLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhcccccceeeCCCCCCHHHHH
Confidence            88888888888888888888887

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.3e-24  Score=177.69  Aligned_cols=118  Identities=32%  Similarity=0.420  Sum_probs=109.4

Q ss_pred             hHHHHhhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHH
Q 037006          365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTE  444 (541)
Q Consensus       365 l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~  444 (541)
                      ++.|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+.+|+.++++
T Consensus         5 L~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~   84 (130)
T d1ycsb1           5 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK   84 (130)
T ss_dssp             HHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHHH
Confidence            56788888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCCcccCC-CCCCHHHHH--HHcCcHHHHHHHHhC
Q 037006          445 LLVKKGADVEARTS-KNVSPMQIA--ECLHYAGISRILMHG  482 (541)
Q Consensus       445 ~Ll~~ga~~~~~~~-~g~t~l~~A--~~~~~~~i~~~Ll~~  482 (541)
                      +|+++|++++..+. .|+||++++  ...|+.+++++|+..
T Consensus        85 ~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          85 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            99999999998764 589998876  566889999999864

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=4.5e-23  Score=176.56  Aligned_cols=122  Identities=22%  Similarity=0.343  Sum_probs=113.1

Q ss_pred             hHHHHhhCCHHHHHHHHHcCCCCCCC------CCCCChHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCChHHHHHH
Q 037006          365 LCVAARKGEVRTMQRLIEAGAAINGK------DLHGWTALHRASFK---GKIEVVRMLIDKGIDVDAKDEDGYTALHCAV  435 (541)
Q Consensus       365 l~~a~~~~~~~~~~~Ll~~g~~~~~~------d~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~  435 (541)
                      ++.|++.+++..+..++..|++++..      +..|+||||+|+..   |+.++|++|+++|+++|.+|..|+||||+|+
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~   89 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC   89 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccc
Confidence            56788888999999999999887765      67899999999974   6899999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCC
Q 037006          436 ESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATK  486 (541)
Q Consensus       436 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ga~~  486 (541)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.++..
T Consensus        90 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          90 LTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999999999999987753

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.6e-23  Score=172.59  Aligned_cols=120  Identities=26%  Similarity=0.302  Sum_probs=70.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHhCCHHH
Q 037006          209 TPLEAAAAAGEALIVELLLARKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEDRRRDC  288 (541)
Q Consensus       209 t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~  288 (541)
                      ++|+.|+..|+.++|++|+++|++++.++..|+||||+|+..|+.+++++|++.|++++..|.+|+||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            34555555555555555555555555555556666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHCCCCCCccCCCCCCcHHHHH--HHcCCHHHHHHHHH
Q 037006          289 ARLLLANGARPDIRNARDGDTPLHIT--ASLGYEQMVKLLLQ  328 (541)
Q Consensus       289 v~~Ll~~g~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~  328 (541)
                      +++|+++|++++..+...+.||++++  +..|+.+++++|++
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            66666666666555444455555443  34455666666654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1e-22  Score=166.62  Aligned_cols=106  Identities=25%  Similarity=0.363  Sum_probs=102.8

Q ss_pred             ChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCcHH
Q 037006          395 WTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAG  474 (541)
Q Consensus       395 ~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  474 (541)
                      .|||++|+++|+.++|++|+++|+|++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCcccccchhhhh
Q 037006          475 ISRILMHGGATKDGIQQTNLRQVSIQ  500 (541)
Q Consensus       475 i~~~Ll~~ga~~~~~~~~~~~~~~~~  500 (541)
                      ++++|+++|++++..+..+.++++.+
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHH
Confidence            99999999999999999999988765

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.2e-21  Score=167.58  Aligned_cols=124  Identities=18%  Similarity=0.224  Sum_probs=104.8

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccc------ccCCCchhHHHHHcCCHHHHHHhhcCCchHHHHhhCCHHHHHHHHHcC
Q 037006          311 LHITASLGYEQMVKLLLQKGANKYIR------NKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG  384 (541)
Q Consensus       311 L~~A~~~g~~~~v~~Ll~~g~~~~~~------~~~g~t~l~~A~~~g~~~~~~~l~~~~~l~~a~~~~~~~~~~~Ll~~g  384 (541)
                      |..|++.++...+..++..|++++..      +..|+||||+|+..+.                  .+..+++++|+++|
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~------------------~~~~~iv~~Ll~~g   71 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVD------------------RTSLHIVDFLVQNS   71 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCC------------------TTTHHHHHHHHHHC
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcC------------------CCCHHHHHHHHHcC
Confidence            44556666666666666666655433      6678899999887543                  34567799999999


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCC
Q 037006          385 AAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGAD  452 (541)
Q Consensus       385 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~  452 (541)
                      +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|++.|+.+++++|++.++.
T Consensus        72 adin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          72 GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             SCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999998654

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.31  E-value=3.1e-12  Score=102.48  Aligned_cols=104  Identities=14%  Similarity=0.269  Sum_probs=85.7

Q ss_pred             ccccCCCCeEEEEecCCCcccceEEEeecccccceeEEEeecCCcceeecCCCccccCCccceeeeeecCCCCCCCCCCC
Q 037006            4 LVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDSF   83 (541)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~p~s~   83 (541)
                      .|+++|.++++|.++.++.++..|+|+|.+.. +||||++++++.||.|+|+.|+|.|..+..+++.+  ++....|  .
T Consensus         6 ~l~i~P~~~L~F~~p~~~~~~~~l~l~N~s~~-~vafKvktt~p~~y~v~P~~G~i~p~~~~~i~V~~--~~~~~~~--~   80 (124)
T d1grwa_           6 DIQTQPGTKIVFNAPYDDKHTYHIKVINSSAR-RIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSC--DAFAFGQ--E   80 (124)
T ss_dssp             CEEEESSSCEEEESCCSSCEEEEEEEEECSSS-CEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE--CCCCGGG--S
T ss_pred             ceEECCCCeEEEecCCCcEEEEEEEEECCCCC-eEEEEEEeCCCceEEEECCCCEECCCCEEEEEEEE--ecCCCCC--c
Confidence            47899999999999999999999999998877 89999999999999999999999999999999984  4332222  2


Q ss_pred             CCCCcceeeeecccCCCCCCCCCCCCCCCCCccccc
Q 037006           84 PHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTT  119 (541)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (541)
                      ..+.|.|++.++.+|..+       .+.....|+..
T Consensus        81 ~~~~dkF~v~~~~~p~~~-------~~~~~~~w~~~  109 (124)
T d1grwa_          81 DTNNDRITVEWTNTPDGA-------AKQFRREWFQG  109 (124)
T ss_dssp             CCTTCEEEEEEEECCSSC-------CSSCCGGGGTS
T ss_pred             ccCCceEEEEEEECCCcc-------HHHHHHHHhcc
Confidence            356899999998887543       24455667754

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=2.7e-11  Score=100.73  Aligned_cols=89  Identities=21%  Similarity=0.329  Sum_probs=75.9

Q ss_pred             cccccCCCCeEEEEecCCCcccceEEEeecccccceeEEEeecCCcceeecCCCccccCCccceeeeeecCCCCCCCCCC
Q 037006            3 RLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDS   82 (541)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~p~s   82 (541)
                      .|++++|.++|+|.++.+..|++.|+|+|.+.. +||||+++|+|.+|.|+|..|+|.|..+..+.+.+  .++     .
T Consensus        17 ~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~-~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~--~~~-----~   88 (152)
T d1wica_          17 PLLHISPAEELYFGSIESGEKKTLIVLTNVTKN-IVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP--HGG-----L   88 (152)
T ss_dssp             SSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSS-CEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE--CSS-----S
T ss_pred             CeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCC-eEEEEEEcCCCccEEEECCceEECCCCEEEEEEEE--CCC-----C
Confidence            489999988999999999999999999998887 89999999999999999999999999988887773  222     2


Q ss_pred             CCCCCcceeeeecccCC
Q 037006           83 FPHCDDSFLLHSVVVPG   99 (541)
Q Consensus        83 ~~~~~~~~l~~~~~~~~   99 (541)
                      ...+.+.|++.++.++.
T Consensus        89 ~~~~kdKFli~~~~v~~  105 (152)
T d1wica_          89 TVSAQDRFLIMAAEMEQ  105 (152)
T ss_dssp             CCCSSCCEEEEEEECCS
T ss_pred             cccCCCcEEEEEEEeCC
Confidence            23567889998876653

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.91  E-value=9.4e-10  Score=85.47  Aligned_cols=84  Identities=19%  Similarity=0.443  Sum_probs=70.2

Q ss_pred             ccccCCCCeEEEEecCCCcccceEEEeecccccceeEEEeecCCcceeecCCCccccCCccceeeeeecCCCCCCCCCCC
Q 037006            4 LVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDSF   83 (541)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~p~s~   83 (541)
                      ||+++| +++.|..+.| .  ++++|+|.+.. +||||++++++.+|.|+|..|+|.|..+..+++..  .++       
T Consensus         3 ~L~i~P-~~l~F~~~~g-~--~~~~l~N~s~~-~vafKiktt~~~~y~V~P~~G~I~P~~~~~i~I~~--~~~-------   68 (109)
T d1m1sa_           3 MINVDP-PTGNYPATGG-N--STHNITSESDS-RLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR--LPG-------   68 (109)
T ss_dssp             SEEEES-SEEEECTTCE-E--EEEEEEECSSS-EEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE--CSC-------
T ss_pred             eEEEeC-CEEEeecCCC-c--EEEEEECCCCC-cEEEEEEcCCCCeEEEeCCeeEECCCCeEEEEEEe--CCC-------
Confidence            789999 7899987755 3  58999998888 89999999999999999999999999999999884  222       


Q ss_pred             CCCCcceeeeecccCCCC
Q 037006           84 PHCDDSFLLHSVVVPGAG  101 (541)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~  101 (541)
                      +...|.|++.+...++..
T Consensus        69 ~~~~DKf~I~~~~~~~~~   86 (109)
T d1m1sa_          69 PPKEDKIVIQYAEVPAEE   86 (109)
T ss_dssp             CSCEEEEEEEEEEECTTC
T ss_pred             CCCCCEEEEEEEECCCCC
Confidence            124788999987777554

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.63  E-value=2.8e-08  Score=76.36  Aligned_cols=82  Identities=22%  Similarity=0.417  Sum_probs=65.2

Q ss_pred             cccCCCCeEEEEecCCCcccceEEEeecccccceeEEEeecCCcceeecCCCccccCCccceeeeeecCCCCCCCCCCCC
Q 037006            5 VSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDSFP   84 (541)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~p~s~~   84 (541)
                      |.+|| .++.|.-. |.  +++++|+|.+.. +||||++++++.+|.|+|..|+|.|..+..+++.+  .++       .
T Consensus         1 l~~dP-~~~~f~~~-~g--~~~~~l~N~s~~-~vafKvKtt~~~~y~V~P~~G~i~P~~~~~I~I~~--~~~-------~   66 (107)
T d1rowa_           1 LTADP-PACTVPAA-GV--SSTHKLVNGGAE-KIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR--TAG-------A   66 (107)
T ss_dssp             CEEES-SSEEEETT-CE--EEEEEEEECSSS-CEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE--CSC-------C
T ss_pred             CeeCC-CcceeeCC-CC--eEEEEEEcCCCC-eEEEEEEcCCCCeEEEECCEEEECCCCEEEEEEEe--CCC-------C
Confidence            46789 66777655 33  368999998777 79999999999999999999999999999999874  322       1


Q ss_pred             CCCcceeeeecccCCC
Q 037006           85 HCDDSFLLHSVVVPGA  100 (541)
Q Consensus        85 ~~~~~~l~~~~~~~~~  100 (541)
                      ...|.|++.+...++.
T Consensus        67 ~~~DKf~I~~~~~~~~   82 (107)
T d1rowa_          67 PKEDKLVVHFASAPAD   82 (107)
T ss_dssp             CEEEEEEEEEEECCTT
T ss_pred             CCCCEEEEEEEECCCC
Confidence            2477899888766543