Citrus Sinensis ID: 037020

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
RFLNRESMGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLLPLMQESFPELGLTQEDCREMSFIESVVYINGFEIREFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLFNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLLKDEL
ccccccccccccEEEEEccccccEEEEEEEEEEEcccccEEEEEEEEcccHHHHHHHHHHHHHHHHcccccccEEEEEEEccccEEEEEEEEEEccHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccccccccEEEcccccccccHHHHHHHHHHHHHcccccEEEEEEEEccccccccccccccccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
ccccHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHccccccEEEEEEEEccccEEEEEEEEEEcccHHHHHHHHHHHccHccccccccHEEcHHHHEHHHccccccccHHHHHccccccccccccHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccHEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccHHHHccc
rflnresmgEDLFWAirggggpsfGIIISWKielvdvpstvtvfAIPRTLEQNATKLLHKWQYIADRvhedlfispflyranSTMVCLFTSlflggvdrllplmqesfpelgltqedcrEMSFIESVVYINGFEIREFIKRFFKgkadyviepipkeafEGLYdlfyeedprtygllvffpyggkmseiseseipfphragnryTLLYYAEWQDATNEASQRHKNMLNKLFnymnpyvtknprtayinyrdldigtnnklgdtsvQEASVWGkkyfknnfYRLVHVKTmvdpenffrneqsippfnllkdel
rflnresmGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLLPLMQESFPELGLTQEDCREMSFIESVVYINGFEIREFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLFNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSVQEASVWGKKYFKNNFYRLVHVKTMVdpenffrneqsippfnllkdel
RFLNRESMGEDLFWAirggggpsfgiiiSWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLLPLMQESFPELGLTQEDCREMSFIESVVYINGFEIREFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLFNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLLKDEL
**********DLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLLPLMQESFPELGLTQEDCREMSFIESVVYINGFEIREFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEA**RHKNMLNKLFNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFR***************
RF*N***MGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLLPLMQESFPELGLTQEDCREMSFIESVVYINGFEIREFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLFNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPF*******
********GEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLLPLMQESFPELGLTQEDCREMSFIESVVYINGFEIREFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLFNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLLKDEL
RFLN*ESMGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLLPLMQESFPELGLTQEDCREMSFIESVVYINGFEIREFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLFNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLL***L
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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RFLNRESMGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLLPLMQESFPELGLTQEDCREMSFIESVVYINGFEIREFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLFNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLLKDEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query312 2.2.26 [Sep-21-2011]
A6P6V9544 Cannabidiolic acid syntha N/A no 0.964 0.553 0.474 5e-80
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.967 0.554 0.468 2e-79
A6P6W1545 Cannabidiolic acid syntha N/A no 0.974 0.557 0.462 5e-79
A6P6W0545 Cannabidiolic acid syntha N/A no 0.974 0.557 0.462 8e-79
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.967 0.554 0.458 1e-77
Q9SVG4570 Reticuline oxidase-like p no no 0.971 0.531 0.415 6e-61
P30986538 Reticuline oxidase OS=Esc N/A no 0.958 0.555 0.397 1e-55
P93479535 Reticuline oxidase OS=Pap N/A no 0.964 0.562 0.384 2e-55
O06997447 Uncharacterized FAD-linke yes no 0.858 0.599 0.280 2e-15
P08159458 6-hydroxy-D-nicotine oxid N/A no 0.830 0.565 0.25 1e-07
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function desciption
 Score =  298 bits (762), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 156/329 (47%), Positives = 215/329 (65%), Gaps = 28/329 (8%)

Query: 1   RFLNRESMGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLE-QNATKLLH 59
           + L+R+SMGEDLFWA+RGGG  SFGII++WKI LV VP + T+F++ + +E     KL++
Sbjct: 215 KVLDRKSMGEDLFWALRGGGAESFGIIVAWKIRLVAVPKS-TMFSVKKIMEIHELVKLVN 273

Query: 60  KWQYIADRVHEDLFI-SPFLYR-------ANSTMV-CLFTSLFLGGVDRLLPLMQESFPE 110
           KWQ IA +  +DL + + F+ R        N T +   F+S+FLGGVD L+ LM +SFPE
Sbjct: 274 KWQNIAYKYDKDLLLMTHFITRNITDNQGKNKTAIHTYFSSVFLGGVDSLVDLMNKSFPE 333

Query: 111 LGLTQEDCREMSFIESVVYING---FEIREFIKRF-----------FKGKADYVIEPIPK 156
           LG+ + DCR++S+I+++++ +G   ++   F K             FK K DYV +PIP+
Sbjct: 334 LGIKKTDCRQLSWIDTIIFYSGVVNYDTDNFNKEILLDRSAGQNGAFKIKLDYVKKPIPE 393

Query: 157 EAFEGLYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDAT 216
             F  + +  YEED    G+   +PYGG M EISES IPFPHRAG  Y L Y   W+   
Sbjct: 394 SVFVQILEKLYEEDIGA-GMYALYPYGGIMDEISESAIPFPHRAGILYELWYICSWEK-- 450

Query: 217 NEASQRHKNMLNKLFNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSVQEASVWGKKYF 276
            E +++H N +  ++N+M PYV+KNPR AY+NYRDLDIG N+     +  +A +WG+KYF
Sbjct: 451 QEDNEKHLNWIRNIYNFMTPYVSKNPRLAYLNYRDLDIGINDPKNPNNYTQARIWGEKYF 510

Query: 277 KNNFYRLVHVKTMVDPENFFRNEQSIPPF 305
             NF RLV VKT+VDP NFFRNEQSIPP 
Sbjct: 511 GKNFDRLVKVKTLVDPNNFFRNEQSIPPL 539
Catalyzes the stereoselective oxidative cyclization of the monoterpene moiety in cannabigerolic acid (CBGA), producing cannabidiolate (CBDA), the major cannabioid in fiber-type Cannabis plants. Can also use cannabinerolic acid as substrate, but not cannabigerol or cannabinerol.
Cannabis sativa (taxid: 3483)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 8
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|P08159|HDNO_ARTOX 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxidans PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query312
224122382 534 predicted protein [Populus trichocarpa] 0.977 0.571 0.569 1e-107
224115242 527 predicted protein [Populus trichocarpa] 0.977 0.578 0.583 1e-107
224122386 533 predicted protein [Populus trichocarpa] 0.967 0.566 0.6 1e-105
224056831 533 predicted protein [Populus trichocarpa] 0.977 0.572 0.580 1e-104
224110866 533 predicted protein [Populus trichocarpa] 0.974 0.570 0.591 1e-104
224108830 533 predicted protein [Populus trichocarpa] 0.974 0.570 0.591 1e-103
359483744 538 PREDICTED: LOW QUALITY PROTEIN: reticuli 0.980 0.568 0.591 1e-103
224108834 533 predicted protein [Populus trichocarpa] 0.967 0.566 0.593 1e-103
255564305 469 Reticuline oxidase precursor, putative [ 0.974 0.648 0.590 1e-103
224103509 531 predicted protein [Populus trichocarpa] 0.974 0.572 0.580 1e-102
>gi|224122382|ref|XP_002330609.1| predicted protein [Populus trichocarpa] gi|222872167|gb|EEF09298.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/323 (56%), Positives = 243/323 (75%), Gaps = 18/323 (5%)

Query: 1   RFLNRESMGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHK 60
           R L+RESMGEDLFWAIRGGGG SFG++ +WK+ LV+VP TVTVFA+P+ L++NATKL+H+
Sbjct: 211 RVLDRESMGEDLFWAIRGGGGNSFGVVTAWKVNLVEVPPTVTVFAVPKVLKENATKLIHR 270

Query: 61  WQYIADRVHEDLFISPFLYRANS------TMVCLFTSLFLGGVDRLLPLMQESFPELGLT 114
           WQY+A+++ ED+ I+ ++ R NS      T+   FTSLFLGGVDRLLPLMQESFPELGL 
Sbjct: 271 WQYVANKLPEDIVIAAYVNRINSSQGGNPTIQATFTSLFLGGVDRLLPLMQESFPELGLV 330

Query: 115 QEDCREMSFIESVVYINGFEIREFIKRF-----------FKGKADYVIEPIPKEAFEGLY 163
           ++DC E+S+IE  +++ GF     +              FK K+DYV +P+P+ A EG++
Sbjct: 331 KDDCIELSWIEFALFLAGFPSNASLDVLLDRTPDQSITSFKAKSDYVKQPLPETALEGMW 390

Query: 164 DLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRH 223
           + F+E+D  +  L +  PYGGKM EISES IPFPHRAGN Y + YY  W +   EAS+RH
Sbjct: 391 ETFFEKDIESPSLFMV-PYGGKMEEISESSIPFPHRAGNLYKIHYYVAWTEEGKEASERH 449

Query: 224 KNMLNKLFNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSVQEASVWGKKYFKNNFYRL 283
            + + +L++YM PYV+KNPR AY+NYRDLD+G NN  G+TS ++AS+WG+KYFKNNF +L
Sbjct: 450 ISWIRRLYSYMTPYVSKNPREAYVNYRDLDLGINNLAGNTSYKQASIWGRKYFKNNFDKL 509

Query: 284 VHVKTMVDPENFFRNEQSIPPFN 306
           V +KT VDP NFFRNEQSIPPF+
Sbjct: 510 VRIKTEVDPANFFRNEQSIPPFS 532

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224115242|ref|XP_002332196.1| predicted protein [Populus trichocarpa] gi|222875303|gb|EEF12434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122386|ref|XP_002330610.1| predicted protein [Populus trichocarpa] gi|222872168|gb|EEF09299.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056831|ref|XP_002299045.1| predicted protein [Populus trichocarpa] gi|222846303|gb|EEE83850.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224110866|ref|XP_002333020.1| predicted protein [Populus trichocarpa] gi|222834634|gb|EEE73097.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108830|ref|XP_002333338.1| predicted protein [Populus trichocarpa] gi|222836258|gb|EEE74679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483744|ref|XP_003633009.1| PREDICTED: LOW QUALITY PROTEIN: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224108834|ref|XP_002333339.1| predicted protein [Populus trichocarpa] gi|222836259|gb|EEE74680.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255564305|ref|XP_002523149.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537556|gb|EEF39180.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224103509|ref|XP_002334045.1| predicted protein [Populus trichocarpa] gi|222839749|gb|EEE78072.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query312
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.961 0.558 0.459 3.2e-72
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.958 0.551 0.454 4.1e-72
TAIR|locus:2163411535 AT5G44410 [Arabidopsis thalian 0.983 0.573 0.470 1.8e-71
TAIR|locus:2163441533 AT5G44440 [Arabidopsis thalian 0.977 0.572 0.451 1.3e-70
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.961 0.554 0.462 2.4e-69
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.955 0.562 0.455 3.8e-69
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.977 0.573 0.444 3.5e-68
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.948 0.556 0.429 6.5e-67
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.951 0.558 0.451 1.3e-66
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.948 0.554 0.446 1.2e-63
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 147/320 (45%), Positives = 202/320 (63%)

Query:     1 RFLNRESMGEDLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAIPRTLEQNA-TKLLH 59
             + L+R +MGED FWA             +WKI+LV VP TVTVF + +TL+Q+   K++ 
Sbjct:   220 KLLDRAAMGEDTFWAIRGGAGGSFGIILAWKIKLVPVPKTVTVFTVTKTLQQDVGNKIIS 279

Query:    60 KWQYIADRVHEDLFISPFLYRA----NSTMVCLFTSLFLGGVDRLLPLMQESFPELGLTQ 115
             KWQ +AD++ E+LFI      A    N T+   + +LFLGG   L+ +M++SFPELGLT 
Sbjct:   280 KWQRVADKLVEELFIRVLFNVAGTGGNKTVTTSYNALFLGGKGTLMNVMKKSFPELGLTF 339

Query:   116 EDCREMSFIESVVYINGFEIRE-----------FIKRFFKGKADYVIEPIPKEAFEGLYD 164
             +DC EMS++ES+ YI+GF               F K  FK K+D+V  PIP+   +G++ 
Sbjct:   340 KDCIEMSWLESIAYISGFPTHTPTNVLLQGKSPFPKVSFKAKSDFVKTPIPESGLQGIFK 399

Query:   165 LFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHK 224
                +ED     L+++ PYGG M++I ES+IPFPHR G  + + Y   W D+    S RH 
Sbjct:   400 KLLKED---IPLMIWNPYGGMMAKIPESQIPFPHRKGVLFKVQYVTSWLDSDKRPS-RHI 455

Query:   225 NMLNKLFNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSVQEASVWGKKYFKNNFYRLV 284
             N +  L++YM PYV+ NPR AY+NYRDLD+G N K   T +++A VWG  YFKNNF RL+
Sbjct:   456 NWIRDLYSYMTPYVSSNPREAYVNYRDLDLGRNTKDVKTCIKQAQVWGANYFKNNFNRLM 515

Query:   285 HVKTMVDPENFFRNEQSIPP 304
              +K  VDPENFFR+EQSIPP
Sbjct:   516 MIKAKVDPENFFRHEQSIPP 535
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163411 AT5G44410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163441 AT5G44440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
pfam0803145 pfam08031, BBE, Berberine and berberine like 8e-17
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information 
 Score = 72.6 bits (179), Expect = 8e-17
 Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 14/59 (23%)

Query: 245 AYINYRDLDIGTNNKLGDTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIP 303
           AY+NY DLD+G               WG+ YF  N+ RL  VK   DP+N FRNEQSIP
Sbjct: 1   AYVNYPDLDLG--------------DWGEAYFGGNYERLRKVKAKYDPDNVFRNEQSIP 45

This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. Length = 45

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 312
PLN02441525 cytokinin dehydrogenase 99.68
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.65
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 98.99
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 98.61
KOG1231505 consensus Proteins containing the FAD binding doma 98.46
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 98.27
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 98.25
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 98.02
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 97.89
PLN02805555 D-lactate dehydrogenase [cytochrome] 97.81
PLN02465573 L-galactono-1,4-lactone dehydrogenase 97.72
PRK11230499 glycolate oxidase subunit GlcD; Provisional 97.7
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 97.3
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 96.69
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 94.17
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 92.16
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 88.44
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 87.77
PLN00107257 FAD-dependent oxidoreductase; Provisional 85.08
KOG1232511 consensus Proteins containing the FAD binding doma 83.47
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 82.95
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=99.68  E-value=1.1e-14  Score=138.12  Aligned_cols=269  Identities=13%  Similarity=0.200  Sum_probs=134.9

Q ss_pred             ccCCCCCCeeEEeecCCCCceeEEEEEEEEeeeCCCeeEEEEEecccchhHHHHHHHHHHhhhc-------------ccc
Q 037020            4 NRESMGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQYIADR-------------VHE   70 (312)
Q Consensus         4 ~s~~~n~DLFWAlRGgGg~nFGIVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~   70 (312)
                      .|+++|||||||+||| +|+|||||++|+|++|+|+.+......+.   ++.++++....+...             .|.
T Consensus       209 ~s~~~n~DLF~Av~Gg-lG~fGIIT~atlrL~Pap~~v~~~~~~y~---~~~~~~~d~~~li~~~~~~~~d~veg~~~p~  284 (525)
T PLN02441        209 CSPTQNSDLFFAVLGG-LGQFGIITRARIALEPAPKRVRWIRVLYS---DFSTFTRDQERLISRPPENSFDYVEGFVIVN  284 (525)
T ss_pred             eCCCCChhHHHhhccC-CCCcEEEEEEEEEEEecCCceEEEEEEcC---CHHHHHHHHHHHHhcCCCCCcceEeEEEEeC
Confidence            3788999999999998 68999999999999999985433333332   233333333332210             111


Q ss_pred             -ccceeEE----Eee----------cCCceEEE--EEEEEecCcc-----chhhhhhhcCCCCCCCccccccccHHHHHH
Q 037020           71 -DLFISPF----LYR----------ANSTMVCL--FTSLFLGGVD-----RLLPLMQESFPELGLTQEDCREMSFIESVV  128 (312)
Q Consensus        71 -~~~~~~~----~~~----------~~~~~~~~--~~~~~~g~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  128 (312)
                       .-.+...    +.+          ..+.....  +...|..+.+     +.+++++. +.-++. ...++.++|.+...
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~le~~~~~~~~~~~~~~~~~~~ll~~-L~~~~~-~~~~~d~~y~~fl~  362 (525)
T PLN02441        285 RNGLINNWRSSFFSPSDPVRASSLPSDGGVLYCLEVAKYYDEDTSDTVDQEVESLLKR-LSFIPG-LLFTTDVSYVDFLD  362 (525)
T ss_pred             CCCceeeeecccCCccccchhhccccCCceEEEEEEEEeeCCCCccchhhHHHHHHhh-cCCCCC-CceecccCHHHHHH
Confidence             0000000    000          01112222  2223332221     22344444 222222 22445667777543


Q ss_pred             HHhc----C-ccc--cccccceeeeeccccCCCCHHHHHHHHHHHhcc-C-CCceeEEEEEecCccccccCCCCC--CCc
Q 037020          129 YING----F-EIR--EFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEE-D-PRTYGLLVFFPYGGKMSEISESEI--PFP  197 (312)
Q Consensus       129 ~~~~----~-~~g--~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~gg~~~~~~~~~~--a~~  197 (312)
                      ....    . ..|  .+++ .|.  ..|    ++...+.++.+.+... . .+....+++.|+..+-.   ++.+  ..|
T Consensus       363 rv~~~e~~lr~~G~W~~ph-PWl--nlf----vp~s~i~~f~~~v~~~i~~~~~~G~~liyP~~~~~~---~~~~s~~~P  432 (525)
T PLN02441        363 RVHVEELKLRSKGLWEVPH-PWL--NLF----VPKSRIADFDDGVFKGILLDGTNGPILVYPLNRSKW---DNRTSAVIP  432 (525)
T ss_pred             hhhhHHHHHhhcCCcCCCC-chh--hee----CcHHHHHHHHHHHHhhcccccCCCeEEEEecccccC---CCCCccccC
Confidence            2211    0 111  0112 221  122    4555566655543332 2 22345677777653221   2222  235


Q ss_pred             ccccceeEEEEEeEeccCChHhHHHHHHHHHHHHhcccccccCCCCceecccccCCCCCCCCCCCCchhhcchhhhhhhh
Q 037020          198 HRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLFNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSVQEASVWGKKYFK  277 (312)
Q Consensus       198 ~r~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Y~Ny~~~~~~~~~~~~~~~~~~~~~~~~~y~g  277 (312)
                      .-+ .-|.+.+... ..+..+.-+...+..+++.+......  ...-.|+....   +            .++|. ..||
T Consensus       433 ~~~-~~y~v~~l~~-~~p~~~~~~~~~~~n~~i~~~~~~~g--~~~k~Yl~~~~---~------------~~~W~-~HfG  492 (525)
T PLN02441        433 DED-IFYLVALLRS-ALPSGDDLEHLLAQNKEILRFCEKAG--IGVKQYLPHYT---T------------QEEWK-RHFG  492 (525)
T ss_pred             CCC-eEEEEEEcCC-CCCCcccHHHHHHHHHHHHHHHHHcC--CceEEcCCCCC---C------------HHHHH-HHhc
Confidence            333 3444444332 22221123455555666655443221  11245654332   1            13795 5679


Q ss_pred             ccHHHHHHhhhhcCCCCCCCCCCCCCCcccC
Q 037020          278 NNFYRLVHVKTMVDPENFFRNEQSIPPFNLL  308 (312)
Q Consensus       278 ~n~~rL~~vK~kyDP~~vF~~~~~i~~~~~~  308 (312)
                      ..++|..+.|++|||.+++.-.|.|.+....
T Consensus       493 ~~w~~f~~~K~~yDP~~iL~pgq~if~~~~~  523 (525)
T PLN02441        493 PKWETFVRRKAKFDPLAILSPGQRIFNRASS  523 (525)
T ss_pred             chHHHHHHHHhhCCchhhcCCCCccCCCCCC
Confidence            9999999999999999999999999876543

>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-72
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 3e-62
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 7e-58
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 5e-54
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 5e-54
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 5e-54
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 5e-54
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 5e-54
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 5e-54
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 6e-54
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 2e-09
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 7e-07
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 8e-07
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 4e-06
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  269 bits (688), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 144/329 (43%), Positives = 195/329 (59%), Gaps = 27/329 (8%)
Query: 1   RFLNRESMGEDLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAIPRTLE-QNATKLLH 59
           + L+R+SMGEDLFWA             +WKI+LV VPS  T+F++ + +E     KL +
Sbjct: 188 KVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFN 247
Query: 60  KWQYIADRVHEDLFISPFLYRAN---------STMVCLFTSLFLGGVDRLLPLMQESFPE 110
           KWQ IA +  +DL +       N         +T+   F+S+F GGVD L+ LM +SFPE
Sbjct: 248 KWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPE 307
Query: 111 LGLTQEDCREMSFIESVVYING---FEIREFIKRF-----------FKGKADYVIEPIPK 156
           LG+ + DC+E S+I++ ++ +G   F    F K             F  K DYV +PIP+
Sbjct: 308 LGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPE 367
Query: 157 EAFEGLYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDAT 216
            A   + +  YEED    G+ V +PYGG M EISES IPFPHRAG  Y L Y A W+   
Sbjct: 368 TAMVKILEKLYEEDVGA-GMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEK-- 424
Query: 217 NEASQRHKNMLNKLFNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSVQEASVWGKKYF 276
            E +++H N +  ++N+  PYV++NPR AY+NYRDLD+G  N     +  +A +WG+KYF
Sbjct: 425 QEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEKYF 484
Query: 277 KNNFYRLVHVKTMVDPENFFRNEQSIPPF 305
             NF RLV VKT VDP NFFRNEQSIPP 
Sbjct: 485 GKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 1e-113
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 1e-112
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 9e-97
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 5e-96
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 4e-93
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 2e-91
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 7e-90
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-89
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 2e-61
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 6e-13
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 2e-08
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
 Score =  336 bits (863), Expect = e-113
 Identities = 119/317 (37%), Positives = 176/317 (55%), Gaps = 16/317 (5%)

Query: 1   RFLNRESMGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLE-QNATKLLH 59
             L+R++MGED+FWAIRGGGG  +G I +WKI+L+ VP  VTVF + + +    AT LLH
Sbjct: 180 AILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLH 239

Query: 60  KWQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLLPLMQESFPELGLTQEDCR 119
           KWQ++A+ + ED  +S         +         G            FPELGL +ED  
Sbjct: 240 KWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYL 299

Query: 120 EMSFIESVVYINGFEI--------REFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDP 171
           EMS+ ES  Y+ G E          +F +R FK K D   EP+P +AF GL +   +E  
Sbjct: 300 EMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPN 359

Query: 172 RTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLF 231
              G +    +GG+MS+IS    PFPHR+G R  + Y   W  +  +      + L K++
Sbjct: 360 ---GFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVY 416

Query: 232 NYMNPYVTKNPRTAYINYRDLDIGTNN----KLGDTSVQEASVWGKKYFKNNFYRLVHVK 287
            +M P+V+KNPR  Y+N+ DLD+G  +     + + +++ +  WG+ YF +N+ RL+  K
Sbjct: 417 EFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAK 476

Query: 288 TMVDPENFFRNEQSIPP 304
           T++DP N F + QSIPP
Sbjct: 477 TLIDPNNVFNHPQSIPP 493
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query312
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 99.63
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 99.1
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 98.88
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 98.49
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 97.96
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 97.94
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 97.87
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 97.82
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 97.51
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 97.23
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 96.79
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 95.59
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 95.0
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 94.6
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 94.05
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 89.95
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 89.22
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 88.31
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 84.2
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=2.3e-51  Score=389.77  Aligned_cols=301  Identities=50%  Similarity=0.937  Sum_probs=245.9

Q ss_pred             cccCCCCCCeeEEeecCCCCceeEEEEEEEEeeeCCCeeEEEEEecccc-hhHHHHHHHHHHhhhccccccceeEEEeec
Q 037020            3 LNRESMGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLE-QNATKLLHKWQYIADRVHEDLFISPFLYRA   81 (312)
Q Consensus         3 ~~s~~~n~DLFWAlRGgGg~nFGIVT~~~~k~~p~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      ++++.+|+|||||+||||+++|||||+++||++|.|+.++.+.+.+.++ +++.+++.+|+++..++|+++++.+.+...
T Consensus       190 v~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~l~~~~~~~~~  269 (518)
T 3vte_A          190 LDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITK  269 (518)
T ss_dssp             ECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHHHHHHHHHHHHHGGGSCTTEEEEEEEEEE
T ss_pred             EEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHHHHHHHHHHHHHHHcCCHhHeEEEEEccc
Confidence            3444578999999999877999999999999999998777788887766 568899999999998899999888877631


Q ss_pred             ---------CCceEEEEEEEEecCccchhhhhhhcCCCCCCCccccccccHHHHHHHHhcCccc--------cc------
Q 037020           82 ---------NSTMVCLFTSLFLGGVDRLLPLMQESFPELGLTQEDCREMSFIESVVYINGFEIR--------EF------  138 (312)
Q Consensus        82 ---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g--------~~------  138 (312)
                               .+.+.+.+.++|.|+.+++.+.+++++++++.....+.+++|.+.+.+...++.+        .+      
T Consensus       270 ~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (518)
T 3vte_A          270 NITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAG  349 (518)
T ss_dssp             SCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECHHHHHHHTSSSCCC-----CGGGGGCTTCS
T ss_pred             CCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecchhhhhhhhhcCCccCCccchhhhhccCCcC
Confidence                     1234677889999999888888888777777666678899999977665433210        01      


Q ss_pred             cccceeeeeccccCCCCHHHHHHHHHHHhccCCCceeEEEEEecCccccccCCCCCCCcccccceeEEEEEeEeccCChH
Q 037020          139 IKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNE  218 (312)
Q Consensus       139 ~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~a~~~r~~~~~~~~~~~~w~~~~~~  218 (312)
                      .+.+|+.||.++.+.++++.++.+++.+.+.+.+ .+.+.+.++||++.++++++|||+||++..|.+++.+.|.+++.+
T Consensus       350 ~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~-~~~v~~~~~GGa~~~v~~~~TAf~hR~~~~~~~~~~~~w~~~~~~  428 (518)
T 3vte_A          350 KKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVG-AGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEKQEDN  428 (518)
T ss_dssp             CCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTT-TEEEEEEECCGGGGTSCTTSSSCCCCTTCCEEEEEEEEECCTTTH
T ss_pred             cccceeeechhcccCCCHHHHHHHHHHHHhCCCC-CeEEEEeecCccccCCCCCCCcccccCcceEEEEEEEecCCcchh
Confidence            1345678999998889999999999988765433 478899999999999999999999998558999999999876543


Q ss_pred             hHHHHHHHHHHHHhcccccccCCCCceecccccCCCC-CCCCCCCCchhhcchhhhhhhhccHHHHHHhhhhcCCCCCCC
Q 037020          219 ASQRHKNMLNKLFNYMNPYVTKNPRTAYINYRDLDIG-TNNKLGDTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFR  297 (312)
Q Consensus       219 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Y~Ny~~~~~~-~~~~~~~~~~~~~~~~~~~y~g~n~~rL~~vK~kyDP~~vF~  297 (312)
                        +.+.+|++++++.|.++.++.+.+.|+||.|.+++ .+. +.+++|+.++.|+++|||+||+||++||+||||+|||+
T Consensus       429 --~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~-~~~~~~~~~~~w~~~Yyg~N~~RL~~vK~~yDP~n~F~  505 (518)
T 3vte_A          429 --EKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNH-ASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFR  505 (518)
T ss_dssp             --HHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCT-TSCCCHHHHHHHHHHHSSTHHHHHHHHHHHHCTTCCSC
T ss_pred             --HHHHHHHHHHHHHhccccCCCCccccccCCCcccccccc-ccccchhhhhhHHHHHhHhHHHHHHHHHhhcCchhccc
Confidence              78899999999999998765567899999997765 210 13456667778999999999999999999999999999


Q ss_pred             CCCCCCCccc
Q 037020          298 NEQSIPPFNL  307 (312)
Q Consensus       298 ~~~~i~~~~~  307 (312)
                      +.|+|+|+..
T Consensus       506 ~~QsI~p~~~  515 (518)
T 3vte_A          506 NEQSIPPLPP  515 (518)
T ss_dssp             CTTCCCCCCT
T ss_pred             CCCCCCCCCC
Confidence            9999999854
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 312
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 1e-04
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 5   RESMGEDLFWAIRGGGGPSFGIIISWKIELV 35
            + +  DLF A+ GG G  FG+I   +I + 
Sbjct: 175 SKQLNADLFDAVLGGLG-QFGVITRARIAVE 204

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query312
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 96.02
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 85.81
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Cytokinin dehydrogenase 1
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.02  E-value=0.011  Score=49.10  Aligned_cols=34  Identities=29%  Similarity=0.510  Sum_probs=29.1

Q ss_pred             chhhhhhhhc-cHHHHHHhhhhcCCCCCCCCCCCCC
Q 037020          269 SVWGKKYFKN-NFYRLVHVKTMVDPENFFRNEQSIP  303 (312)
Q Consensus       269 ~~~~~~y~g~-n~~rL~~vK~kyDP~~vF~~~~~i~  303 (312)
                      +.|.+ .||. .+++.++.|++|||.+++.-.|.|.
T Consensus       254 ~dW~~-HFG~~kW~~F~~~K~~yDP~~ILsPGQ~IF  288 (289)
T d1w1oa1         254 SDWVR-HFGAAKWNRFVEMKNKYDPKRLLSPGQDIF  288 (289)
T ss_dssp             HHHHH-HHCHHHHHHHHHHHHHHCTTCCBCGGGCSC
T ss_pred             HHHHH-HcCcchHHHHHHHHhhCCcccccCCCCccC
Confidence            38964 5685 6999999999999999999988874
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure