Citrus Sinensis ID: 037036

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEIDKVEFY
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEccccccccEEEcEEEEEEEEEEccEEcccccEEEEcccEEEEEcccccccEEEEEccHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEccEEEEEEHHccccccEccccEEEEEEEEEcccEEcccccEEEEcccEEEEEEccccccccEcccHHHHHHHHcccc
Coil and Loop (DISEMBL)
ASNRRYAHILRNVFVVVIKKaipkmplevsDVFTTLIVCTCtnlrrdngiiiayddsttaVIHQkekfegnssfwcgrpeidkvefy
Flexible Loop (DISEMBL)
asnrryahilrNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKekfegnssfwcgrpeidkvefy
Low Complexity Region (SEG)
ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEIDKVEFY
Disordered region (IsUnstruct)
*****YAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRP********
Disordered Region (DISOPRED)
****RYAHILRNVFVVVIKKAIPK**LEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEIDKVEFY
Disordered Region (DISEMBL)
ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEIDKVEFY
Disordered Region (DISPRO)
***RRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEIDK****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEIDKVEFY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	87	2.2.26 [Sep-21-2011]
Q7YJU2	122	50S ribosomal protein L14	N/A	no	0.977	0.696	0.511	3e-16
Q33BZ6	122	50S ribosomal protein L14	N/A	no	0.977	0.696	0.523	5e-16
Q09G09	122	50S ribosomal protein L14	N/A	no	0.977	0.696	0.5	7e-16
A0A372	122	50S ribosomal protein L14	N/A	no	0.977	0.696	0.5	1e-15
P06382	122	50S ribosomal protein L14	N/A	no	0.977	0.696	0.5	1e-15
Q2VEE4	122	50S ribosomal protein L14	N/A	no	0.977	0.696	0.5	1e-15
Q2MI64	122	50S ribosomal protein L14	N/A	no	0.977	0.696	0.5	1e-15
Q2MIF1	122	50S ribosomal protein L14	N/A	no	0.977	0.696	0.5	1e-15
Q3C1L9	122	50S ribosomal protein L14	N/A	no	0.977	0.696	0.5	1e-15
Q06GW0	122	50S ribosomal protein L14	N/A	no	0.977	0.696	0.488	2e-15

>sp|Q7YJU2|RK14_CALFG 50S ribosomal protein L14, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl14 PE=3 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+A+P MPLE S+V   +IV TC  L+RDNG+II YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ K+ F
Sbjct: 86  VIDQEGNPKGTRVFGAIARELRKLNF 111

Binds to 23S rRNA.
Calycanthus floridus var. glaucus (taxid: 212734)

>sp|Q33BZ6|RK14_NICTO 50S ribosomal protein L14, chloroplastic OS=Nicotiana tomentosiformis GN=rpl14 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+AIP MPLE S+V   +IV TC  L+RDNGIII YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAIPNMPLERSEVVRAVIVRTCKELKRDNGIIIRYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ ++ F
Sbjct: 86  VIDQEGNPKGTRIFGAIARELRELNF 111

Binds to 23S rRNA.

Nicotiana tomentosiformis (taxid: 4098)

>sp|Q09G09|RK14_PLAOC 50S ribosomal protein L14, chloroplastic OS=Platanus occidentalis GN=rpl14 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+A+P MPLE S+V   +IV TC  L+RDNG+II YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ ++ F
Sbjct: 86  VIDQEGNPKGTRVFGAIARELRQLSF 111

Binds to 23S rRNA.

Platanus occidentalis (taxid: 4403)

>sp|A0A372|RK14_COFAR 50S ribosomal protein L14, chloroplastic OS=Coffea arabica GN=rpl14 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+A+P MPLE S+V   +IV TC  L+RDNG+II YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ ++ F
Sbjct: 86  VIDQEGNPKGTRIFGAIARELRQLNF 111

Binds to 23S rRNA.

Coffea arabica (taxid: 13443)

>sp|P06382|RK14_TOBAC 50S ribosomal protein L14, chloroplastic OS=Nicotiana tabacum GN=rpl14 PE=3 SV=2

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+A+P MPLE S+V   +IV TC  L+RDNG+II YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ ++ F
Sbjct: 86  VIDQEGNPKGTRIFGAIARELRELNF 111

Binds to 23S rRNA.

Nicotiana tabacum (taxid: 4097)

>sp|Q2VEE4|RK14_SOLTU 50S ribosomal protein L14, chloroplastic OS=Solanum tuberosum GN=rpl14 PE=3 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+A+P MPLE S+V   +IV TC  L+RDNG+II YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ ++ F
Sbjct: 86  VIDQEGNPKGTRIFGAIARELRELNF 111

Binds to 23S rRNA.

Solanum tuberosum (taxid: 4113)

>sp|Q2MI64|RK14_SOLLC 50S ribosomal protein L14, chloroplastic OS=Solanum lycopersicum GN=rpl14 PE=3 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+A+P MPLE S+V   +IV TC  L+RDNG+II YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ ++ F
Sbjct: 86  VIDQEGNPKGTRIFGAIARELRELNF 111

Binds to 23S rRNA.

Solanum lycopersicum (taxid: 4081)

>sp|Q2MIF1|RK14_SOLBU 50S ribosomal protein L14, chloroplastic OS=Solanum bulbocastanum GN=rpl14 PE=3 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+A+P MPLE S+V   +IV TC  L+RDNG+II YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ ++ F
Sbjct: 86  VIDQEGNPKGTRIFGAIARELRELNF 111

Binds to 23S rRNA.

Solanum bulbocastanum (taxid: 147425)

>sp|Q3C1L9|RK14_NICSY 50S ribosomal protein L14, chloroplastic OS=Nicotiana sylvestris GN=rpl14 PE=3 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+A+P MPLE S+V   +IV TC  L+RDNG+II YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ ++ F
Sbjct: 86  VIDQEGNPKGTRIFGAIARELRELNF 111

Binds to 23S rRNA.

Nicotiana sylvestris (taxid: 4096)

>sp|Q06GW0|RK14_DRIGR 50S ribosomal protein L14, chloroplastic OS=Drimys granadensis GN=rpl14 PE=3 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+A+P MPL+ S+V   +IV TC  L+RDNG+II YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAVPNMPLQRSEVIRAVIVRTCKELKRDNGMIIRYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ ++ F
Sbjct: 86  VIDQEGNPKGTRVFGAIARELRQLNF 111

Binds to 23S rRNA.

Drimys granadensis (taxid: 224735)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
452848725	122	ribosomal protein L14 (chloroplast) [Mag	0.977	0.696	0.511	1e-14
32480879	122	ribosomal protein L14 [Calycanthus flori	0.977	0.696	0.511	1e-14
81301604	122	ribosomal protein L14 [Nicotiana tomento	0.977	0.696	0.523	2e-14
290487930	122	ribosomal protein L14 [Meliosma aff. cun	0.977	0.696	0.5	2e-14
306486157	122	ribosomal protein L14 [Franklinia alatam	0.977	0.696	0.5	2e-14
435856410	122	ribosomal protein L14 (chloroplast) [Cam	0.977	0.696	0.5	3e-14
114329784	122	ribosomal protein L14 [Platanus occident	0.977	0.696	0.5	3e-14
334361987	122	ribosomal protein L14 [Nelumbo lutea] gi	0.977	0.696	0.5	3e-14
194132135	122	ribosomal protein L14 [Gonystylus bancan	0.977	0.696	0.523	3e-14
404474561	122	ribosomal protein L14 (chloroplast) [Cap	0.977	0.696	0.511	3e-14

>gi|452848725|ref|YP_007474407.1| ribosomal protein L14 (chloroplast) [Magnolia officinalis] gi|452848808|ref|YP_007474489.1| ribosomal protein L14 (chloroplast) [Magnolia officinalis subsp. biloba] gi|372862458|gb|AEX98539.1| ribosomal protein L14 (chloroplast) [Magnolia officinalis] gi|372862541|gb|AEX98621.1| ribosomal protein L14 (chloroplast) [Magnolia officinalis subsp. biloba] gi|372862626|gb|AEX98705.1| ribosomal protein L14 (chloroplast) [Magnolia officinalis subsp. biloba] gi|372862711|gb|AEX98789.1| ribosomal protein L14 (chloroplast) [Magnolia officinalis subsp. biloba]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+A+P MPLE S+V   +IV TC  LRRDNG+II YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ ++ F
Sbjct: 86  VIDQEGNPKGTRVFGAIARELRQLNF 111

Source: Magnolia officinalis

Species: Magnolia officinalis

Genus: Magnolia

Family: Magnoliaceae

Order: Magnoliales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32480879|ref|NP_862790.1| ribosomal protein L14 [Calycanthus floridus var. glaucus] gi|75297115|sp|Q7YJU2.1|RK14_CALFG RecName: Full=50S ribosomal protein L14, chloroplastic gi|32399415|emb|CAD28757.1| ribosomal protein L14 [Calycanthus floridus var. glaucus]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+A+P MPLE S+V   +IV TC  L+RDNG+II YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ K+ F
Sbjct: 86  VIDQEGNPKGTRVFGAIARELRKLNF 111

Source: Calycanthus floridus var. glaucus

Species: Calycanthus floridus

Genus: Calycanthus

Family: Calycanthaceae

Order: Laurales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|81301604|ref|YP_398900.1| ribosomal protein L14 [Nicotiana tomentosiformis] gi|122233121|sp|Q33BZ6.1|RK14_NICTO RecName: Full=50S ribosomal protein L14, chloroplastic gi|80750963|dbj|BAE48039.1| ribosomal protein L14 [Nicotiana tomentosiformis]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+AIP MPLE S+V   +IV TC  L+RDNGIII YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAIPNMPLERSEVVRAVIVRTCKELKRDNGIIIRYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ ++ F
Sbjct: 86  VIDQEGNPKGTRIFGAIARELRELNF 111

Source: Nicotiana tomentosiformis

Species: Nicotiana tomentosiformis

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|290487930|gb|ADD30349.1| ribosomal protein L14 [Meliosma aff. cuneifolia Moore 333]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+A+P MPLE S+V   +IV TC  L+RDNG+II YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ ++ F
Sbjct: 86  VIDQEGNPKGTRVFGAVARELRQLNF 111

Source: Meliosma aff. cuneifolia Moore 333

Species: Meliosma aff. cuneifolia Moore 333

Genus: Meliosma

Family: Sabiaceae

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|306486157|gb|ADM92724.1| ribosomal protein L14 [Franklinia alatamaha]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+A+P MPLE S+V   +IV TC  L+RDNG+II YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIQYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ ++ F
Sbjct: 86  VIDQEGNPKGTRVFGAIARELRQLNF 111

Source: Franklinia alatamaha

Species: Franklinia alatamaha

Genus: Franklinia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|435856410|ref|YP_007317285.1| ribosomal protein L14 (chloroplast) [Camellia sinensis] gi|330318565|gb|AEC10954.1| ribosomal protein L14 [Camellia sinensis] gi|430728309|gb|AGA55633.1| ribosomal protein L14 (chloroplast) [Camellia sinensis]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+A+P MPLE S+V   +IV TC  L+RDNG+II YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIQYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ ++ F
Sbjct: 86  VIDQEGNPKGTRVFGAIARELRQLNF 111

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|114329784|ref|YP_740602.1| ribosomal protein L14 [Platanus occidentalis] gi|122166001|sp|Q09G09.1|RK14_PLAOC RecName: Full=50S ribosomal protein L14, chloroplastic gi|114054422|gb|ABI49816.1| ribosomal protein L14 [Platanus occidentalis]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+A+P MPLE S+V   +IV TC  L+RDNG+II YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ ++ F
Sbjct: 86  VIDQEGNPKGTRVFGAIARELRQLSF 111

Source: Platanus occidentalis

Species: Platanus occidentalis

Genus: Platanus

Family: Platanaceae

Order: Proteales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334361987|ref|YP_004563904.1| ribosomal protein L14 [Nelumbo lutea] gi|334362087|ref|YP_004564140.1| ribosomal protein L14 [Nelumbo nucifera] gi|224474172|gb|ACN49361.1| ribosomal protein L14 [Nelumbo lutea] gi|224474260|gb|ACN49446.1| ribosomal protein L14 [Nelumbo nucifera] gi|290487932|gb|ADD30350.1| ribosomal protein L14 [Nelumbo nucifera] gi|383286834|gb|AFH01484.1| ribosomal protein L14 (chloroplast) [Nelumbo nucifera] gi|383286926|gb|AFH01575.1| ribosomal protein L14 (chloroplast) [Nelumbo lutea]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+A+P MPLE S+V   +IV TC  L+RDNG+II YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAVPNMPLEKSEVIRAVIVRTCKELKRDNGMIIRYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ ++ F
Sbjct: 86  VIDQEGNPKGTRVFGAIARELRQLNF 111

Source: Nelumbo lutea

Species: Nelumbo lutea

Genus: Nelumbo

Family: Nelumbonaceae

Order: Proteales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194132135|gb|ACF33389.1| ribosomal protein L14 [Gonystylus bancanus]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+AIP  PLE S+V   LIV TC  L+RDNGIII YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAIPNTPLERSEVIRALIVRTCKELKRDNGIIIRYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ ++ F
Sbjct: 86  VIDQEGNPKGTRIFGAIARELRQLNF 111

Source: Gonystylus bancanus

Species: Gonystylus bancanus

Genus: Gonystylus

Family: Thymelaeaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|404474561|ref|YP_006666066.1| ribosomal protein L14 (chloroplast) [Capsicum annuum] gi|401065968|gb|AFP90812.1| ribosomal protein L14 (chloroplast) [Capsicum annuum]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYAHI  +V V VIK+A+P MPLE S+V   +IV TC  L+RDNGIII YDD+   
Sbjct: 27  ASNRRYAHI-GDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGIIIRYDDNAAV 85

Query: 61  VIHQKEKFEGNSSFWCGRPEIDKVEF 86
           VI Q+   +G   F     E+ ++ F
Sbjct: 86  VIDQEGNPKGTRIFGAIARELRELNF 111

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
UNIPROTKB|P0C438	123	rpl14 "50S ribosomal protein L	0.977	0.691	0.441	7.1e-13
UNIPROTKB|P0C439	123	rpl14 "50S ribosomal protein L	0.977	0.691	0.441	7.1e-13
UNIPROTKB|P0C440	123	rpl14 "50S ribosomal protein L	0.977	0.691	0.441	7.1e-13
UNIPROTKB|Q6END7	123	rpl14 "50S ribosomal protein L	0.977	0.691	0.441	7.1e-13
TIGR_CMR|CJE_1865	122	CJE_1865 "ribosomal protein L1	0.827	0.590	0.328	5.5e-06
TIGR_CMR|CBU_0248	122	CBU_0248 "ribosomal protein L1	0.827	0.590	0.328	7e-06
UNIPROTKB|Q9KNZ4	123	rplN "50S ribosomal protein L1	0.747	0.528	0.303	1.1e-05
TIGR_CMR|VC_2586	123	VC_2586 "ribosomal protein L14	0.747	0.528	0.303	1.1e-05
TIGR_CMR|SPO_0495	122	SPO_0495 "ribosomal protein L1	0.827	0.590	0.287	3e-05
TIGR_CMR|CHY_2299	122	CHY_2299 "ribosomal protein L1	0.965	0.688	0.282	6.3e-05

UNIPROTKB|P0C438 rpl14 "50S ribosomal protein L14, chloroplastic" [Oryza sativa (taxid:4530)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 38/86 (44%), Positives = 53/86 (61%)

Query:     1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
             ASN+RYA I  +V V VIK A+P+MPLE S+V   +IV TC   + ++GIII YDD+   
Sbjct:    28 ASNQRYARI-GDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAV 86

Query:    61 VIHQKEKFEGNSSFWCGRPEIDKVEF 86
             +I QK   +G   F     E+ ++ F
Sbjct:    87 IIDQKGNPKGTRVFGAIAEELRELNF 112

GO:0009536 "plastid" evidence=IC

UNIPROTKB|P0C439 rpl14 "50S ribosomal protein L14, chloroplastic" [Oryza sativa Indica Group (taxid:39946)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 38/86 (44%), Positives = 53/86 (61%)

Query:     1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
             ASN+RYA I  +V V VIK A+P+MPLE S+V   +IV TC   + ++GIII YDD+   
Sbjct:    28 ASNQRYARI-GDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAV 86

Query:    61 VIHQKEKFEGNSSFWCGRPEIDKVEF 86
             +I QK   +G   F     E+ ++ F
Sbjct:    87 IIDQKGNPKGTRVFGAIAEELRELNF 112

GO:0009536 "plastid" evidence=IC

UNIPROTKB|P0C440 rpl14 "50S ribosomal protein L14, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 38/86 (44%), Positives = 53/86 (61%)

Query:     1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
             ASN+RYA I  +V V VIK A+P+MPLE S+V   +IV TC   + ++GIII YDD+   
Sbjct:    28 ASNQRYARI-GDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAV 86

Query:    61 VIHQKEKFEGNSSFWCGRPEIDKVEF 86
             +I QK   +G   F     E+ ++ F
Sbjct:    87 IIDQKGNPKGTRVFGAIAEELRELNF 112

GO:0009536 "plastid" evidence=IC

UNIPROTKB|Q6END7 rpl14 "50S ribosomal protein L14, chloroplastic" [Oryza nivara (taxid:4536)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 38/86 (44%), Positives = 53/86 (61%)

Query:     1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
             ASN+RYA I  +V V VIK A+P+MPLE S+V   +IV TC   + ++GIII YDD+   
Sbjct:    28 ASNQRYARI-GDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAV 86

Query:    61 VIHQKEKFEGNSSFWCGRPEIDKVEF 86
             +I QK   +G   F     E+ ++ F
Sbjct:    87 IIDQKGNPKGTRVFGAIAEELRELNF 112

GO:0009536 "plastid" evidence=IC

TIGR_CMR|CJE_1865 CJE_1865 "ribosomal protein L14" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 24/73 (32%), Positives = 39/73 (53%)

Query:     2 SNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAV 61
             S RRYA +  +V V  +KKA+P   ++   V   +IV T   + RDNG +I +D++   +
Sbjct:    28 SKRRYATV-GDVIVASVKKALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVI 86

Query:    62 IHQKEKFEGNSSF 74
             +  K +  G   F
Sbjct:    87 LDNKREPIGTRIF 99

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|CBU_0248 CBU_0248 "ribosomal protein L14" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 24/73 (32%), Positives = 44/73 (60%)

Query:     2 SNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAV 61
             S RRYA+I  +V  V IK+AIP+  ++  DV   ++V T   +RR++G +I +D++   +
Sbjct:    28 SKRRYANI-GDVIKVSIKEAIPRGKVKKGDVMHAVVVRTRKGVRRNDGSLIRFDNNAVVL 86

Query:    62 IHQKEKFEGNSSF 74
             ++ + +  G   F
Sbjct:    87 LNNQLQLVGTRVF 99

GO:0003735 "structural constituent of ribosome" evidence=ISS

UNIPROTKB|Q9KNZ4 rplN "50S ribosomal protein L14" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 20/66 (30%), Positives = 40/66 (60%)

Query:     2 SNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAV 61
             S+RRYAH+  ++  V +K+AIP+  ++  DV   ++V T   +RR +G +I +D +   +
Sbjct:    28 SHRRYAHV-GDIIKVTVKEAIPRGKVKKGDVLKAVVVRTRKGVRRPDGSVIRFDRNACVL 86

Query:    62 IHQKEK 67
             ++   +
Sbjct:    87 LNNNSE 92

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_2586 VC_2586 "ribosomal protein L14" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 20/66 (30%), Positives = 40/66 (60%)

Query:     2 SNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAV 61
             S+RRYAH+  ++  V +K+AIP+  ++  DV   ++V T   +RR +G +I +D +   +
Sbjct:    28 SHRRYAHV-GDIIKVTVKEAIPRGKVKKGDVLKAVVVRTRKGVRRPDGSVIRFDRNACVL 86

Query:    62 IHQKEK 67
             ++   +
Sbjct:    87 LNNNSE 92

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|SPO_0495 SPO_0495 "ribosomal protein L14" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 21/73 (28%), Positives = 41/73 (56%)

Query:     2 SNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAV 61
             S R+YA +  ++ VV +K+AIP+  ++  DV   ++V T   +RR++G  I +D +   +
Sbjct:    28 SKRKYASV-GDIIVVSVKEAIPRGRVKKGDVRKAVVVRTAKEVRREDGTAIRFDRNAAVI 86

Query:    62 IHQKEKFEGNSSF 74
             ++   +  G   F
Sbjct:    87 LNNNNEPVGTRIF 99

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CHY_2299 CHY_2299 "ribosomal protein L14" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 24/85 (28%), Positives = 43/85 (50%)

Query:     2 SNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAV 61
             SNRRYA  L ++ V  +K+A P   ++  +V   ++V T   +RR +G  I +D++   +
Sbjct:    28 SNRRYAS-LGDIIVCSVKEATPDAVVKKGEVVKAVVVRTKKEVRRPDGTYIKFDENAAVI 86

Query:    62 IHQKEKFEGNSSFWCGRPEIDKVEF 86
             I   +   G   F     E+ + +F
Sbjct:    87 IKDDKSPRGTRIFGPVARELREKDF 111

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	87
CHL00057	122	CHL00057, rpl14, ribosomal protein L14	1e-18
pfam00238	122	pfam00238, Ribosomal_L14, Ribosomal protein L14p/L	2e-10
TIGR01067	122	TIGR01067, rplN_bact, ribosomal protein L14, bacte	2e-09
PRK05483	122	PRK05483, rplN, 50S ribosomal protein L14; Validat	5e-08
COG0093	122	COG0093, RplN, Ribosomal protein L14 [Translation,	1e-07

>gnl|CDD|176997 CHL00057, rpl14, ribosomal protein L14

 Score = 73.8 bits (182), Expect = 1e-18
 Identities = 37/71 (52%), Positives = 50/71 (70%), Gaps = 5/71 (7%)

Query: 1  ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
          ASNR+YAHI  +V + V+K+A+P MPL+ S+V   +IV TC  L+RDNG+II +DD+   
Sbjct: 27 ASNRKYAHI-GDVIIAVVKEAVPNMPLKRSEVVRAVIVRTCKELKRDNGMIIRFDDNAAV 85

Query: 61 VIHQKEKFEGN 71
          VI Q    EGN
Sbjct: 86 VIDQ----EGN 92

Length = 122

>gnl|CDD|201105 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e

 Score = 52.5 bits (127), Expect = 2e-10
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 2  SNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAV 61
          S ++YA +  ++ VV +KKAIPK  ++  DV   +IV T   +RR +G  I +DD+   +
Sbjct: 28 SRKKYAKV-GDIIVVSVKKAIPKGKVKKGDVVKAVIVRTKKEVRRKDGSYIRFDDNAVVL 86

Query: 62 IHQKEKFEGNSSF 74
          I+ K + +G   F
Sbjct: 87 INNKGEPKGTRIF 99

Length = 122

>gnl|CDD|130139 TIGR01067, rplN_bact, ribosomal protein L14, bacterial/organelle

 Score = 50.0 bits (120), Expect = 2e-09
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 1  ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           S RRYA +  +V VVV+K AIP   ++  DV   +IV T   +RR +G  I +DD+   
Sbjct: 27 GSRRRYATV-GDVIVVVVKDAIPNGKVKKGDVVKAVIVRTKKGVRRKDGSYIRFDDNACV 85

Query: 61 VIHQK 65
          +I++ 
Sbjct: 86 LINKN 90

This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 122

>gnl|CDD|180117 PRK05483, rplN, 50S ribosomal protein L14; Validated

 Score = 46.3 bits (111), Expect = 5e-08
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 2  SNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDD 56
          S RRYA I  +V VV +K+AIP+  ++  DV   ++V T   +RR +G  I +DD
Sbjct: 28 SKRRYASI-GDVIVVSVKEAIPRGKVKKGDVVKAVVVRTKKGVRRPDGSYIRFDD 81

Length = 122

>gnl|CDD|223171 COG0093, RplN, Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

 Score = 45.3 bits (108), Expect = 1e-07
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 1  ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           S RRYA +  ++ VV +KKAIP+  ++  DV   ++V T   +RR +G  I +DD   A
Sbjct: 27 GSRRRYAGV-GDIIVVSVKKAIPRGMVKKGDVVKAVVVRTKKEVRRPDGSYIKFDD-NAA 84

Query: 61 VIHQKEK 67
          VI   + 
Sbjct: 85 VIINPDG 91

Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
COG0093	122	RplN Ribosomal protein L14 [Translation, ribosomal	100.0
CHL00057	122	rpl14 ribosomal protein L14	100.0
PRK05483	122	rplN 50S ribosomal protein L14; Validated	100.0
TIGR01067	122	rplN_bact ribosomal protein L14, bacterial/organel	100.0
PTZ00320	188	ribosomal protein L14; Provisional	100.0
PTZ00054	139	60S ribosomal protein L23; Provisional	100.0
TIGR03673	131	rpl14p_arch 50S ribosomal protein L14P. Part of th	100.0
PRK08571	132	rpl14p 50S ribosomal protein L14P; Reviewed	100.0
PF00238	122	Ribosomal_L14: Ribosomal protein L14p/L23e; InterP	100.0
KOG0901	145	consensus 60S ribosomal protein L14/L17/L23 [Trans	99.9
KOG3441	149	consensus Mitochondrial ribosomal protein L14 [Tra	99.5

>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.9e-41  Score=227.63  Aligned_cols=86  Identities=31%  Similarity=0.494  Sum_probs=83.9

Q ss_pred             CCCcceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhh
Q 037036            1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPE   80 (87)
Q Consensus         1 g~~~~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~e   80 (87)
                      |++|+||.+ ||+|++|||++.|...+||||+++||||||+++++|+||++|+|||||+||+|++++|+||||||||++|
T Consensus        27 g~~r~~A~v-GD~ivvsVKka~P~~~vKkg~V~~AViVRtkk~~rR~DGs~i~FddNA~Viin~~g~P~GtrI~GPVaRE  105 (122)
T COG0093          27 GSRRRYAGV-GDIIVVSVKKAIPRGMVKKGDVVKAVVVRTKKEVRRPDGSYIKFDDNAAVIINPDGEPRGTRIFGPVARE  105 (122)
T ss_pred             cccccccCC-CCEEEEEEeeccCCcceeccceEEEEEEEeCCceEcCCCCEEEeCCceEEEECCCCCcccceEecchhHH
Confidence            577889999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCC
Q 037036           81 IDKVEFY   87 (87)
Q Consensus        81 lr~kk~~   87 (87)
                      ||+++|+
T Consensus       106 lr~~~~~  112 (122)
T COG0093         106 LRERGFM  112 (122)
T ss_pred             HHhcCCc
Confidence            9999985

>CHL00057 rpl14 ribosomal protein L14

Probab=100.00  E-value=6.3e-39  Score=218.73  Aligned_cols=86  Identities=44%  Similarity=0.733  Sum_probs=83.2

Q ss_pred             CCCcceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhh
Q 037036            1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPE   80 (87)
Q Consensus         1 g~~~~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~e   80 (87)
                      |+++++|++ ||+|+||||++.|+++++|||+++|||||||++++|+||++++|||||+||||++++|+||||+||||+|
T Consensus        27 ~~~~~~a~v-GD~IvvsVk~~~~~~k~kkg~v~kAvIVrtk~~~~r~dG~~i~F~~Na~VLin~~~~p~GTrI~Gpv~~e  105 (122)
T CHL00057         27 ASNRKYAHI-GDVIIAVVKEAVPNMPLKRSEVVRAVIVRTCKELKRDNGMIIRFDDNAAVVIDQEGNPKGTRVFGPIARE  105 (122)
T ss_pred             CCCCccccC-CCEEEEEEEeccCCCceecCCEEEEEEEEeccccCcCCCcEEEcCCceEEEECCCCCEeEeEEEccchHH
Confidence            357789999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCC
Q 037036           81 IDKVEFY   87 (87)
Q Consensus        81 lr~kk~~   87 (87)
                      ||+++|+
T Consensus       106 lr~k~~~  112 (122)
T CHL00057        106 LREKNFT  112 (122)
T ss_pred             HhhcCCe
Confidence            9999985

>PRK05483 rplN 50S ribosomal protein L14; Validated

Probab=100.00  E-value=7.9e-39  Score=218.18  Aligned_cols=86  Identities=31%  Similarity=0.502  Sum_probs=83.1

Q ss_pred             CCCcceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhh
Q 037036            1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPE   80 (87)
Q Consensus         1 g~~~~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~e   80 (87)
                      |+++++|++ ||+|+||||++.|+++++|||+++|||||||++++|.||++++|||||+||||++++|+|||||||||+|
T Consensus        27 ~~~~~~a~i-GD~I~vsVkk~~~~~~~kkg~v~~AvIVrtkk~~~r~dG~~i~F~dNavVLin~~~~p~GTrI~Gpv~~e  105 (122)
T PRK05483         27 GSKRRYASI-GDVIVVSVKEAIPRGKVKKGDVVKAVVVRTKKGVRRPDGSYIRFDDNAAVLLNNDGEPRGTRIFGPVARE  105 (122)
T ss_pred             CCCCCcccc-CCEEEEEEEEcCCCCcccCCCEeeEEEEEeccceecCCCCEEEcCCCEEEEECCCCCEeEeEEeccchHH
Confidence            357789999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCC
Q 037036           81 IDKVEFY   87 (87)
Q Consensus        81 lr~kk~~   87 (87)
                      ||+++|+
T Consensus       106 lr~~~~~  112 (122)
T PRK05483        106 LRDKKFM  112 (122)
T ss_pred             HhhcCCc
Confidence            9998885

>TIGR01067 rplN_bact ribosomal protein L14, bacterial/organelle

Probab=100.00  E-value=2e-38  Score=216.14  Aligned_cols=86  Identities=34%  Similarity=0.516  Sum_probs=83.0

Q ss_pred             CCCcceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhh
Q 037036            1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPE   80 (87)
Q Consensus         1 g~~~~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~e   80 (87)
                      ++++++|.+ ||+|+||||++.|++++++||+++|||||||++++|.||++++|||||+||+|++++|+||||+||||+|
T Consensus        27 ~~~~~~a~i-GD~I~vsVk~~~~~~~~kkg~v~~AvIVrtkk~~~r~dG~~i~F~~Na~VLin~~~~p~GTrI~Gpv~~e  105 (122)
T TIGR01067        27 GSRRRYATV-GDVIVVVVKDAIPNGKVKKGDVVKAVIVRTKKGVRRKDGSYIRFDDNACVLINKNKEPRGTRIFGPVARE  105 (122)
T ss_pred             CCCCCcccc-CCEEEEEEEEcCCCCccccccEEEEEEEEeecceEeCCCCEEECCCceEEEECCCCCEeeeEEEccchHH
Confidence            356789999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCC
Q 037036           81 IDKVEFY   87 (87)
Q Consensus        81 lr~kk~~   87 (87)
                      ||+++|+
T Consensus       106 lr~~~~~  112 (122)
T TIGR01067       106 LRDKGFM  112 (122)
T ss_pred             HhhcCCc
Confidence            9999885

This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms.

>PTZ00320 ribosomal protein L14; Provisional

Probab=100.00  E-value=2.1e-37  Score=222.66  Aligned_cols=85  Identities=13%  Similarity=0.301  Sum_probs=82.4

Q ss_pred             CCcceeeecCCE----EEEEEEccCC------CCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeee
Q 037036            2 SNRRYAHILRNV----FVVVIKKAIP------KMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGN   71 (87)
Q Consensus         2 ~~~~~a~i~GD~----I~vsVkk~~~------~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~Gt   71 (87)
                      +++++|+| ||+    |+||||++.|      ++++|||||++|||||||++++|+||++++||||||||||++++|+||
T Consensus        84 ~~rr~A~I-GDi~~~~IvVsVKka~P~~~~~~~~kVKKG~V~kAVIVRTKK~irR~DGs~IrFDdNAaVLIN~qgePlGT  162 (188)
T PTZ00320         84 TAERFAHC-RVFPAVAHRVSVQRFKSGRGEVSRHRVKPGNIYWVCLLSRRQTNTRMSGLQTNFDRNTCILMNDQRVPLGT  162 (188)
T ss_pred             cCCCceee-ccccCceEEEEEeecccCccccccCceecCCEEEEEEEEECcccCCCCCCEEEeCCcEEEEECCCCCEeee
Confidence            46799999 999    9999999999      789999999999999999999999999999999999999999999999


Q ss_pred             EEeccchhhhhcccCC
Q 037036           72 SSFWCGRPEIDKVEFY   87 (87)
Q Consensus        72 RI~Gpv~~elr~kk~~   87 (87)
                      ||||||++|||+++|+
T Consensus       163 RIfGPVaRELR~k~f~  178 (188)
T PTZ00320        163 RVMYCAGRHVNHKYHL  178 (188)
T ss_pred             EEecchhHHHhhcCCc
Confidence            9999999999999985

>PTZ00054 60S ribosomal protein L23; Provisional

Probab=100.00  E-value=2.4e-36  Score=209.97  Aligned_cols=78  Identities=18%  Similarity=0.287  Sum_probs=74.8

Q ss_pred             ceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhhhhcc
Q 037036            5 RYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEIDKV   84 (87)
Q Consensus         5 ~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~elr~k   84 (87)
                      ++|.+ ||+|+||||++.|   +++||+++|||||||++++|+||++++|||||+||||++++|+|||||||||+|| ++
T Consensus        52 ~~a~i-GD~IvvsVKk~~p---~~kg~V~kAVIVRtKk~~rR~dGs~i~F~dNA~VLin~~~~p~GTRI~GpV~rEl-~~  126 (139)
T PTZ00054         52 PSASL-GDMVLATVKKGKP---ELRKKVLNAVIIRQRKAWRRKDGVFIYFEDNAGVIVNPKGEMKGSAITGPVAKEC-AD  126 (139)
T ss_pred             ccccc-CCEEEEEEEECCC---cccCCEeeEEEEEECcceEcCCCcEEEeCCcEEEEECCCCCEeeeEEeCchhHHH-Hh
Confidence            58999 9999999999999   6799999999999999999999999999999999999999999999999999999 66


Q ss_pred             cCC
Q 037036           85 EFY   87 (87)
Q Consensus        85 k~~   87 (87)
                      +|+
T Consensus       127 ~~~  129 (139)
T PTZ00054        127 LWP  129 (139)
T ss_pred             Ccc
Confidence            774

>TIGR03673 rpl14p_arch 50S ribosomal protein L14P

Probab=100.00  E-value=2.6e-36  Score=208.07  Aligned_cols=78  Identities=19%  Similarity=0.282  Sum_probs=74.8

Q ss_pred             ceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhhhhcc
Q 037036            5 RYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEIDKV   84 (87)
Q Consensus         5 ~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~elr~k   84 (87)
                      ++|.+ ||+|+||||++.|   +++||+++|||||||++++|+||++++|||||+||||++++|+|||||||||+|| ++
T Consensus        44 ~~a~i-GD~IvvsVK~~~p---~~kg~v~kAVIVRtkk~~~R~dGs~i~FddNa~VLin~~~~P~GTRI~GpV~rEl-~~  118 (131)
T TIGR03673        44 PCAGV-GDMVVVSVKKGTP---EMRKQVFKAVVVRQRKEYRRPDGTRVKFEDNAVVIVTPDGEPKGTEIKGPVAREA-AE  118 (131)
T ss_pred             Ccccc-CCEEEEEEEECCc---cccCCEeEEEEEEeCcceecCCCcEEEeCCcEEEEECCCCCEeeeEEEccchHHH-Hh
Confidence            67999 9999999999999   6799999999999999999999999999999999999999999999999999999 66


Q ss_pred             cCC
Q 037036           85 EFY   87 (87)
Q Consensus        85 k~~   87 (87)
                      +|+
T Consensus       119 ~~~  121 (131)
T TIGR03673       119 RWP  121 (131)
T ss_pred             Ccc
Confidence            775

Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges.

>PRK08571 rpl14p 50S ribosomal protein L14P; Reviewed

Probab=100.00  E-value=4.2e-36  Score=207.25  Aligned_cols=78  Identities=18%  Similarity=0.253  Sum_probs=74.5

Q ss_pred             ceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhhhhcc
Q 037036            5 RYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEIDKV   84 (87)
Q Consensus         5 ~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~elr~k   84 (87)
                      ++|.+ ||+|+||||++.|   +++||+++|||||||++++|+||++++|||||+||||++++|+|||||||||+|| ++
T Consensus        45 ~~a~i-GD~IvvsVK~~~p---~~kg~v~kAVIVRtkk~~~R~dGs~i~F~dNa~VLin~~~~p~GTRI~GpV~~El-~~  119 (132)
T PRK08571         45 PKAGV-GDMVVVSVKKGTP---EMRKQVLRAVVVRQRKEYRRPDGTRVKFEDNAAVIVTPEGTPKGTEIKGPVAREA-AE  119 (132)
T ss_pred             Ccccc-CCEEEEEEEECCC---cccCCEeEEEEEEeccceEcCCCcEEEeCCcEEEEECCCCCEeeeEEeccchHHH-hh
Confidence            57999 9999999999999   6799999999999999999999999999999999999999999999999999999 66


Q ss_pred             cCC
Q 037036           85 EFY   87 (87)
Q Consensus        85 k~~   87 (87)
                      +|+
T Consensus       120 ~~~  122 (132)
T PRK08571        120 RWP  122 (132)
T ss_pred             CCc
Confidence            774

>PF00238 Ribosomal_L14: Ribosomal protein L14p/L23e; InterPro: IPR000218 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=5.4e-36  Score=203.76  Aligned_cols=85  Identities=29%  Similarity=0.483  Sum_probs=80.4

Q ss_pred             CCcceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhhh
Q 037036            2 SNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEI   81 (87)
Q Consensus         2 ~~~~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~el   81 (87)
                      +++++|++ ||+|+||||++.|+.+++|||+++|||||||++++|.||++++|||||+||+|++++|+||||+||||+||
T Consensus        28 ~~~~~a~v-GD~I~vsVkk~~~~~~vkkg~v~~avIVrtk~~~~r~dg~~i~F~~Na~VLln~~~~p~GtrI~Gpv~~el  106 (122)
T PF00238_consen   28 KRRKYASV-GDIIVVSVKKGRPKSKVKKGQVYKAVIVRTKKPIRRKDGSFIKFDDNAVVLLNKKGNPLGTRIFGPVPREL  106 (122)
T ss_dssp             TTTSEE-T-TSEEEEEEEEE-SSSSSTTTEEEEEEEEECSSEEETTTSEEEEESSEEEEEEETTSSBSSSSBCSEEEHHH
T ss_pred             cCcccccc-ceEEEEEEeecccCccccccceEEEEEEEEeEEEEEeCCcEEEeCCccEEEEcCCCCEeeeEEEeeehHHh
Confidence            46789999 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCC
Q 037036           82 DKVEFY   87 (87)
Q Consensus        82 r~kk~~   87 (87)
                      |+++|+
T Consensus       107 r~~~~~  112 (122)
T PF00238_consen  107 RKKKFP  112 (122)
T ss_dssp             HHTTSH
T ss_pred             hHcCCc
Confidence            998884

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L14 is one of the proteins from the large ribosomal subunit. In eubacteria, L14 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins, which have been grouped on the basis of sequence similarities []. Based on amino-acid sequence homology, it is predicted that ribosomal protein L14 is a member of a recently identified family of structurally related RNA-binding proteins []. L14 is a protein of 119 to 137 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZR_M 4A1C_J 4A1E_J 4A1A_J 4A17_J 1VSP_I 3D5D_O 1VSA_I 3MRZ_K 3F1F_O ....

>KOG0901 consensus 60S ribosomal protein L14/L17/L23 [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=7.7e-24  Score=147.99  Aligned_cols=80  Identities=20%  Similarity=0.334  Sum_probs=76.9

Q ss_pred             ceeeecCCEEEEEEEc--cCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhhhh
Q 037036            5 RYAHILRNVFVVVIKK--AIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEID   82 (87)
Q Consensus         5 ~~a~i~GD~I~vsVkk--~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~elr   82 (87)
                      .+|.+ ||+++++||+  ..|..++|.|+++.|+|||++++..|.||+++.|+|||+|++|+.++|.||+|+|||++|++
T Consensus        53 ~~A~~-GD~vva~vKka~~~Pe~r~k~g~~~~avvVr~~k~~~r~dgs~~~f~dnA~v~~~~~~e~~gs~i~G~v~~e~~  131 (145)
T KOG0901|consen   53 PAAGV-GDMVVATVKKAHGKPELRKKVGEVLPAVVVRQKKSKRRKDGSIAYFEDNAGVIVNNKGEPKGSAITGPVGKELA  131 (145)
T ss_pred             cCCCc-CCEEEEEEecccCCCccCcEecccceeeEEeeccccccCCCcEEEEcCceEEEEcccCccccceeccccChhHh
Confidence            37899 9999999999  79999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccC
Q 037036           83 KVEF   86 (87)
Q Consensus        83 ~kk~   86 (87)
                      . .|
T Consensus       132 ~-~~  134 (145)
T KOG0901|consen  132 D-LW  134 (145)
T ss_pred             h-hh
Confidence            7 54

>KOG3441 consensus Mitochondrial ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=4.1e-14  Score=97.90  Aligned_cols=65  Identities=14%  Similarity=0.196  Sum_probs=57.4

Q ss_pred             cceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhhhh
Q 037036            4 RRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEID   82 (87)
Q Consensus         4 ~~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~elr   82 (87)
                      +..+.+ ||.|+|+|          |||..+|+||..+..  ++.|. .+||+|.+|||+++|+|+||||.-|||..||
T Consensus        66 rgvg~~-GDkiLvAI----------kGQmkKa~vVGh~~~--~k~~~-P~fDsNniVLiddnGnPlGtRI~~PIPT~Lr  130 (149)
T KOG3441|consen   66 RGVGEL-GDKILVAI----------KGQMKKAYVVGHVHY--RKHGV-PVFDSNNIVLIDDNGNPLGTRITAPIPTKLR  130 (149)
T ss_pred             cccccc-ccEEEEEE----------ecceeeeEEEEeecc--CCCCC-cccCCCcEEEECCCCCcccceEeccCcHHHH
Confidence            446788 99999999          799999999997654  44454 6999999999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	87
3bbo_M	121	Homology Model For The Spinach Chloroplast 50s Subu		2e-14
2j01_O	122	Structure Of The Thermus Thermophilus 70s Ribosome		1e-04
2hgj_N	122	Crystal Structure Of The 70s Thermus Thermophilus R		1e-04
2wwq_K	121	E.Coli 70s Ribosome Stalled During Translation Of T		4e-04
2j28_K	121	Model Of E. Coli Srp Bound To 70s Rncs Length = 121		4e-04
3ofq_K	122	Crystal Structure Of The E. Coli Ribosome Bound To		4e-04
2gya_I	122	Structure Of The 50s Subunit Of A Pre-Translocation		4e-04
1p85_I	123	Real Space Refined Coordinates Of The 50s Subunit F		4e-04

>pdb|3BBO|M Chain M, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 121

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           ASNRRYA I  +V V VIK+AIP  PLE S+V   ++V TC  L+RDNG+II YDD+   
Sbjct: 27  ASNRRYARI-GDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYDDNAAV 85
Query: 61  VIHQKEKFEGNSSFWC 76
           +I Q+   +G   F  
Sbjct: 86  IIDQEGNPKGTRIFGA 101

>pdb|2J01|O Chain O, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 122

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
            SN +YA +  +V V  +K+AIP+  ++  DV   ++V T   ++R +G  I +DD+   
Sbjct: 27  GSNAKYATV-GDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAV 85
Query: 61  VIHQKEKFEGNSSFW 75
           +I+ + +  G   F 
Sbjct: 86  IINNQLEPRGTRVFG 100

>pdb|2HGJ|N Chain N, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. Length = 122

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 1   ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
            SN +YA +  +V V  +K+AIP+  ++  DV   ++V T   ++R +G  I +DD+   
Sbjct: 27  GSNAKYATV-GDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEVKRPDGSAIRFDDNAAV 85
Query: 61  VIHQKEKFEGNSSFW 75
           +I+ + +  G   F 
Sbjct: 86  IINNQLEPRGTRVFG 100

>pdb|2WWQ|K Chain K, E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide. This File Contains The 50s, The P-Site Trna And The Tnac Leader Peptide (Part 2 Of 2) Length = 121

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1  ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           S+RRYA +  ++  + IK+AIP+  ++  DV   ++V T   +RR +G +I +D +   
Sbjct: 27 GSHRRYAGV-GDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACV 85
Query: 61 VIH 63
          +++
Sbjct: 86 LLN 88

>pdb|2J28|K Chain K, Model Of E. Coli Srp Bound To 70s Rncs Length = 121

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1  ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           S+RRYA +  ++  + IK+AIP+  ++  DV   ++V T   +RR +G +I +D +   
Sbjct: 26 GSHRRYAGV-GDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACV 84
Query: 61 VIH 63
          +++
Sbjct: 85 LLN 87

>pdb|3OFQ|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. Length = 122

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1  ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           S+RRYA +  ++  + IK+AIP+  ++  DV   ++V T   +RR +G +I +D +   
Sbjct: 27 GSHRRYAGV-GDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACV 85
Query: 61 VIH 63
          +++
Sbjct: 86 LLN 88

>pdb|2GYA|I Chain I, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 122

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1  ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           S+RRYA +  ++  + IK+AIP+  ++  DV   ++V T   +RR +G +I +D +   
Sbjct: 26 GSHRRYAGV-GDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACV 84
Query: 61 VIH 63
          +++
Sbjct: 85 LLN 87

>pdb|1P85|I Chain I, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 123

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1  ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           S+RRYA +  ++  + IK+AIP+  ++  DV   ++V T   +RR +G +I +D +   
Sbjct: 27 GSHRRYAGV-GDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACV 85
Query: 61 VIH 63
          +++
Sbjct: 86 LLN 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	87
3v2d_O	122	50S ribosomal protein L14; ribosome associated inh	5e-05
3bbo_M	121	Ribosomal protein L14; large ribosomal subunit, sp	1e-04
1whi_A	122	Ribosomal protein L14; rRNA-binding; 1.50A {Geobac	1e-04

>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ... Length = 122

 Score = 38.1 bits (88), Expect = 5e-05
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 1  ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTA 60
           SN +YA +  +V V  +K+AIP+  ++  DV   ++V T   ++R +G  I +DD+   
Sbjct: 27 GSNAKYATV-GDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAV 85

Query: 61 VIHQKEKFEGNSSF 74
          +I+ + +  G   F
Sbjct: 86 IINNQLEPRGTRVF 99

>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 121

 Score = 36.9 bits (85), Expect = 1e-04
 Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 1/70 (1%)

Query: 2  SNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAV 61
          SNRRYA I  +V V VIK+AIP  PLE S+V   ++V TC  L+RDNG+II YDD+   +
Sbjct: 28 SNRRYARI-GDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYDDNAAVI 86

Query: 62 IHQKEKFEGN 71
          I Q+   +G 
Sbjct: 87 IDQEGNPKGT 96

>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M Length = 122

 Score = 36.6 bits (84), Expect = 1e-04
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 2  SNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAV 61
          S RRYA+I  +V V  +K A P   ++   V   ++V T   +RR +G  I +D++   +
Sbjct: 28 SGRRYANI-GDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFDENACVI 86

Query: 62 IHQKEKFEGN 71
          I   +   G 
Sbjct: 87 IRDDKSPRGT 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	87
3v2d_O	122	50S ribosomal protein L14; ribosome associated inh	100.0
1whi_A	122	Ribosomal protein L14; rRNA-binding; 1.50A {Geobac	100.0
3r8s_K	122	50S ribosomal protein L14; protein biosynthesis, R	100.0
3bbo_M	121	Ribosomal protein L14; large ribosomal subunit, sp	100.0
1vq8_K	132	50S ribosomal protein L14P; ribosome 50S, protein-	100.0
3j21_J	141	50S ribosomal protein L14P; archaea, archaeal, KIN	100.0
3u5e_V	137	L17A, YL32, 60S ribosomal protein L23-A; translati	100.0

>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...

Probab=100.00  E-value=1.7e-41  Score=230.54  Aligned_cols=86  Identities=28%  Similarity=0.473  Sum_probs=83.7

Q ss_pred             CCCcceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhh
Q 037036            1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPE   80 (87)
Q Consensus         1 g~~~~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~e   80 (87)
                      |++++||++ ||+|++|||++.|++++||||+++||||||+++++|+||++++|||||+||||++++|+|||||||||+|
T Consensus        27 ~~~rr~a~i-GD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk~~rR~dG~~i~FddNa~Vlin~~~~p~GTrI~GpVarE  105 (122)
T 3v2d_O           27 GSNAKYATV-GDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARE  105 (122)
T ss_dssp             TTTCCCBCT-TCEEEEEEEEECSSSSSCTTCEEEEEEEECSSCEECTTSCEEEESSCEEEEECTTSCBSSSCBCSCBCTH
T ss_pred             CCCCcccCC-CCEEEEEEEEcCCCCccccCCEEEEEEEEeCCccCCCCCcEEEcCCcEEEEECCCCCEeeeEEEccchHH
Confidence            467899999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCC
Q 037036           81 IDKVEFY   87 (87)
Q Consensus        81 lr~kk~~   87 (87)
                      ||+++|+
T Consensus       106 lr~~~~~  112 (122)
T 3v2d_O          106 LREKGFM  112 (122)
T ss_dssp             HHHTTCH
T ss_pred             HhhCCCc
Confidence            9999984

>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M

Probab=100.00  E-value=2.3e-41  Score=229.83  Aligned_cols=86  Identities=28%  Similarity=0.443  Sum_probs=83.8

Q ss_pred             CCCcceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhh
Q 037036            1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPE   80 (87)
Q Consensus         1 g~~~~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~e   80 (87)
                      |++++||++ ||+|++|||++.|++++||||+++||||||+++++|+||++++|||||+||||++++|+|||||||||+|
T Consensus        27 g~~~r~a~i-GD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~FddNa~Vlin~~g~p~GTrI~GPVarE  105 (122)
T 1whi_A           27 GSGRRYANI-GDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARE  105 (122)
T ss_dssp             STTCCCBCT-TCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEECCSSCEEEEECTTSCBSSSCBCSCBCTH
T ss_pred             CCccccccc-CeEEEEEEEEecCCCccccccEEEEEEEEecCceecCCCCEEEeCCceEEEECCCCCEeeeEEEccchHH
Confidence            578899999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCC
Q 037036           81 IDKVEFY   87 (87)
Q Consensus        81 lr~kk~~   87 (87)
                      ||+++|+
T Consensus       106 lr~k~~~  112 (122)
T 1whi_A          106 LRDKDFM  112 (122)
T ss_dssp             HHHTTCH
T ss_pred             HhhcCCc
Confidence            9999884

>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...

Probab=100.00  E-value=4.9e-41  Score=228.24  Aligned_cols=86  Identities=28%  Similarity=0.487  Sum_probs=83.5

Q ss_pred             CCCcceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCC-CCeeeeEEeccchh
Q 037036            1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQK-EKFEGNSSFWCGRP   79 (87)
Q Consensus         1 g~~~~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~-~~p~GtRI~Gpv~~   79 (87)
                      |++++||++ ||+|++|||++.|++++||||+++||||||+++++|+||++++|||||+||||++ ++|+|||||||||+
T Consensus        27 g~~r~~a~i-GD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~FddNa~Vlin~~~g~p~GTrI~GpVar  105 (122)
T 3r8s_K           27 GSHRRYAGV-GDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTR  105 (122)
T ss_dssp             SSSCCCBCT-TCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEEEESSCEEEEEETTTEEESCSCBCSCCCG
T ss_pred             CCCCCcccC-CCEEEEEEEEcCCCCccccCCEEEEEEEEeCCcCCCCCCcEEEcCCceEEEEeCCCCCEeeeEEEccccH
Confidence            467899999 9999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             hhhcccCC
Q 037036           80 EIDKVEFY   87 (87)
Q Consensus        80 elr~kk~~   87 (87)
                      |||+++|+
T Consensus       106 ElR~~~~~  113 (122)
T 3r8s_K          106 ELRSEKFM  113 (122)
T ss_dssp             GGGSGGGH
T ss_pred             HHhHcCCc
Confidence            99999884

>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=7.4e-41  Score=227.10  Aligned_cols=85  Identities=47%  Similarity=0.755  Sum_probs=82.6

Q ss_pred             CCCcceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhh
Q 037036            1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPE   80 (87)
Q Consensus         1 g~~~~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~e   80 (87)
                      |++++||++ ||+|++|||++.|++++||||+++||||||+++++|+||++++|||||+||||++++|+|||||||||+|
T Consensus        27 g~~~r~a~i-GD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~FddNa~Vlin~~g~p~GTrI~GPVarE  105 (121)
T 3bbo_M           27 ASNRRYARI-GDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARE  105 (121)
T ss_dssp             SSCCCCCCT-TCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECTTSCEECCSSCEEEECCTTSSCSSSCCCSCCCGG
T ss_pred             CCCcccccc-CcEEEEEEEEccCCCccccCcEEEEEEEEecCccccCCCCEEEeCCceEEEECCCCCEeEeEEEcCcCHH
Confidence            578899999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCC
Q 037036           81 IDKVEFY   87 (87)
Q Consensus        81 lr~kk~~   87 (87)
                      ||+ +|+
T Consensus       106 lr~-~~~  111 (121)
T 3bbo_M          106 LRQ-KFA  111 (121)
T ss_dssp             GTT-TCH
T ss_pred             HHh-cch
Confidence            999 874

>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...

Probab=100.00  E-value=8.8e-38  Score=214.60  Aligned_cols=82  Identities=20%  Similarity=0.352  Sum_probs=78.5

Q ss_pred             CCCcce--eeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccch
Q 037036            1 ASNRRY--AHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGR   78 (87)
Q Consensus         1 g~~~~~--a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~   78 (87)
                      |++++|  |++ ||+|++|||++.|++   |||+++||||||+++++|+||++++|||||+||||++++|+|||||||||
T Consensus        39 g~~~r~p~a~i-GD~IvvsVKk~~p~~---kg~v~~AVIVRtkk~~rR~dG~~i~FddNA~Vlin~~g~p~GTrI~GPVa  114 (132)
T 1vq8_K           39 GTKNRLPKAGL-GDKITVSVTKGTPEM---RRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIA  114 (132)
T ss_dssp             CCTTCCCEECT-TCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTSCEEEESSCEEEEECTTSCBSSSCBCSEEC
T ss_pred             CcccccCCCcc-CcEEEEEEEecCCCC---CCcEEEEEEEEcCCCcCcCCCcEEEeCCceEEEECCCCCEeEEEEEcCcC
Confidence            467888  999 999999999999998   99999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCC
Q 037036           79 PEIDKVEFY   87 (87)
Q Consensus        79 ~elr~kk~~   87 (87)
                      +|||+ +|+
T Consensus       115 rElr~-~~~  122 (132)
T 1vq8_K          115 REVAQ-RFG  122 (132)
T ss_dssp             HHHHH-HSH
T ss_pred             HHHHh-ccc
Confidence            99998 773

>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=4.8e-37  Score=212.86  Aligned_cols=81  Identities=20%  Similarity=0.329  Sum_probs=76.4

Q ss_pred             CCcce--eeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchh
Q 037036            2 SNRRY--AHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRP   79 (87)
Q Consensus         2 ~~~~~--a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~   79 (87)
                      +.++|  |.| ||+|++|||++.|++   |||+++||||||+++++|+||++++|||||+||||++++|+|||||||||+
T Consensus        49 ~~~r~~~A~i-GD~IvvsVKk~~p~~---kg~V~kAVIVRtkk~~rR~dGs~i~FddNA~VLin~~g~p~GTRI~GPVar  124 (141)
T 3j21_J           49 TRRRLASAGV-GDMVVATVKKGRPDM---RHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAR  124 (141)
T ss_dssp             CTTCCCCBCS-SCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTSCEECCSSCEEEEBCTTSCBCSSCCCSEECH
T ss_pred             cccccccCCc-CCEEEEEEEecCCCC---cCceEEEEEEEeCCccCCCCCcEEEcCCcEEEEECCCCCEeeeEEEccccH
Confidence            45664  999 999999999999998   799999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccCC
Q 037036           80 EIDKVEFY   87 (87)
Q Consensus        80 elr~kk~~   87 (87)
                      |||+ +|+
T Consensus       125 Elr~-~~~  131 (141)
T 3j21_J          125 EAAE-RWV  131 (141)
T ss_dssp             HHHH-HCH
T ss_pred             HHHh-hch
Confidence            9998 463

>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J

Probab=100.00  E-value=9.3e-37  Score=210.58  Aligned_cols=78  Identities=17%  Similarity=0.348  Sum_probs=75.5

Q ss_pred             ceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhhhhcc
Q 037036            5 RYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEIDKV   84 (87)
Q Consensus         5 ~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~elr~k   84 (87)
                      ++|.| ||+|++|||++.|++   |||+++||||||+++++|+||++++|||||+||||++++|+|||||||||+|||++
T Consensus        50 ~~A~i-GD~IvvsVK~~~p~~---k~~V~~AVIVRtkk~~rR~dG~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~  125 (137)
T 3u5e_V           50 PAASL-GDMVMATVKKGKPEL---RKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADL  125 (137)
T ss_dssp             CEECT-TCEEEEECSSBCTTT---TTSCEEEEEEECCSCEECTTSCEEEESSCEEEEBCTTCCBSSSCBCSCBCHHHHTT
T ss_pred             ccCCc-CCEEEEEEEECCCCC---CCcEEEEEEEEeccccCcCCCeEEEcCCceEEEECCCCCEeeeEEEcchhHHHHHH
Confidence            59999 999999999999998   89999999999999999999999999999999999999999999999999999986


Q ss_pred             cCC
Q 037036           85 EFY   87 (87)
Q Consensus        85 k~~   87 (87)
                       |+
T Consensus       126 -~~  127 (137)
T 3u5e_V          126 -WP  127 (137)
T ss_dssp             -CH
T ss_pred             -hh
Confidence             73

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	87
d2j01o1	122	b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus	3e-08
d2gyci1	121	b.39.1.1 (I:2-122) Ribosomal protein L14 {Escheric	4e-08
d1vqok1	132	b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon	4e-04

>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]} Length = 122

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Thermus thermophilus [TaxId: 274]

 Score = 45.1 bits (107), Expect = 3e-08
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 2  SNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAV 61
          SN +YA +  +V V  +K+AIP+  ++  DV   ++V T   ++R +G  I +DD+   +
Sbjct: 28 SNAKYATV-GDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVI 86

Query: 62 IHQKEKFEGNSSF 74
          I+ + +  G   F
Sbjct: 87 INNQLEPRGTRVF 99

>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]} Length = 121

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (106), Expect = 4e-08
 Identities = 19/66 (28%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 2  SNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAV 61
          S+RRYA +  ++  + IK+AIP+  ++  DV   ++V T   +RR +G +I +D +   +
Sbjct: 27 SHRRYAGV-GDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVL 85

Query: 62 IHQKEK 67
          ++   +
Sbjct: 86 LNNNSE 91

>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 132

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 34.4 bits (79), Expect = 4e-04
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 12  NVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEG 70
           +   V + K  P+M      V   ++V     +RR +G  + ++D+   ++ + E   G
Sbjct: 51  DKITVSVTKGTPEMR---RQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRG 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	87
d1whia_	122	Ribosomal protein L14 {Bacillus stearothermophilus	100.0
d2j01o1	122	Ribosomal protein L14 {Thermus thermophilus [TaxId	100.0
d2gyci1	121	Ribosomal protein L14 {Escherichia coli [TaxId: 56	100.0
d1vqok1	132	Ribosomal protein L14 {Archaeon Haloarcula marismo	100.0

>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=3.8e-39  Score=217.18  Aligned_cols=86  Identities=28%  Similarity=0.443  Sum_probs=82.9

Q ss_pred             CCCcceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhh
Q 037036            1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPE   80 (87)
Q Consensus         1 g~~~~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~e   80 (87)
                      ++++++|.+ ||+|+||||++.|+++++|||+++|||||||++++|.||++++|||||+||+|++++|+||||+||||+|
T Consensus        27 ~~~~~~a~v-GD~I~vsVk~~~~~~~vkkg~v~~AvIVrtkk~~~R~dG~~i~F~~Na~VLl~~~~~P~GTrI~Gpv~~e  105 (122)
T d1whia_          27 GSGRRYANI-GDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARE  105 (122)
T ss_dssp             STTCCCBCT-TCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEECCSSCEEEEECTTSCBSSSCBCSCBCTH
T ss_pred             CCCcccccc-CCEEEEEEeecccCCeeEcccceeeEEEEEeeeeeccCCceEEeCCCEEEEECCCCCEeeeeEeccchHH
Confidence            356789999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCC
Q 037036           81 IDKVEFY   87 (87)
Q Consensus        81 lr~kk~~   87 (87)
                      ||+++|+
T Consensus       106 lr~~~~~  112 (122)
T d1whia_         106 LRDKDFM  112 (122)
T ss_dssp             HHHTTCH
T ss_pred             HhhcCCc
Confidence            9999884

>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.7e-39  Score=216.25  Aligned_cols=86  Identities=28%  Similarity=0.473  Sum_probs=83.1

Q ss_pred             CCCcceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhh
Q 037036            1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPE   80 (87)
Q Consensus         1 g~~~~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~e   80 (87)
                      ++++++|.+ ||+|+||||++.|++++++||+++|||||||++++|.||++++|||||+||||++++|+||||+||||+|
T Consensus        27 ~~~~~~a~v-GD~I~vsVkk~~~~~~vkkg~v~~AvIVrtkk~~~r~dG~~i~F~~Na~VLl~~~~~p~GTrI~Gpv~~e  105 (122)
T d2j01o1          27 GSNAKYATV-GDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARE  105 (122)
T ss_dssp             STTCCCCCT-TCEEEEEEEECCTTCSSCSSCEEEEEEEECSSCEECTTSCEEECSSCEEEEECTTSCCSSSCCCSCCCTH
T ss_pred             CCCCccccc-CcEEEEEEeecccCCccccCcCcceeEEeeecceEcCCCCEEEcCCCEEEEECCCCCEeeeEEeccchHH
Confidence            457789999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCC
Q 037036           81 IDKVEFY   87 (87)
Q Consensus        81 lr~kk~~   87 (87)
                      ||+++|+
T Consensus       106 lr~~~~~  112 (122)
T d2j01o1         106 LREKGFM  112 (122)
T ss_dssp             HHHHCCH
T ss_pred             HhhcCCc
Confidence            9999883

>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.1e-39  Score=216.26  Aligned_cols=86  Identities=27%  Similarity=0.474  Sum_probs=82.6

Q ss_pred             CCCcceeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCC-CeeeeEEeccchh
Q 037036            1 ASNRRYAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKE-KFEGNSSFWCGRP   79 (87)
Q Consensus         1 g~~~~~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~-~p~GtRI~Gpv~~   79 (87)
                      |+++++|.+ ||+|+||||++.|+++++|||+++|||||||++++|.||++++||||||||||+++ +|+||||+||||+
T Consensus        26 ~~~~~~a~v-GD~I~vsVk~~~~~~~vkkg~v~~AvIVrtkk~~~R~dG~~i~F~~Na~VLi~~~~~~p~GTrI~Gpv~~  104 (121)
T d2gyci1          26 GSHRRYAGV-GDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTR  104 (121)
T ss_dssp             CCSSSCCCT-TCEEEECCCSBCSSSSCCTTCCEEEEEEECSSCEECTTSCEECCSSCEEEEECSSSSCBSSSCCCSCBCS
T ss_pred             CCCCccCcc-CcEEEEEEEEccCCCccccccEEEEEEEEEeeeEeccCCeEEEeCCCEEEEEcCCCCCcccCeEEccchH
Confidence            456889999 99999999999999999999999999999999999999999999999999999997 6999999999999


Q ss_pred             hhhcccCC
Q 037036           80 EIDKVEFY   87 (87)
Q Consensus        80 elr~kk~~   87 (87)
                      |||+++|+
T Consensus       105 elr~~~~~  112 (121)
T d2gyci1         105 ELRSEKFM  112 (121)
T ss_dssp             TTSSSSCS
T ss_pred             HHhHcCCc
Confidence            99999985

>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=9.7e-35  Score=197.79  Aligned_cols=76  Identities=20%  Similarity=0.354  Sum_probs=73.2

Q ss_pred             eeeecCCEEEEEEEccCCCCCccccCeeEEEEEeeeeceecCCCeeEEecCceEEEECCCCCeeeeEEeccchhhhhccc
Q 037036            6 YAHILRNVFVVVIKKAIPKMPLEVSDVFTTLIVCTCTNLRRDNGIIIAYDDSTTAVIHQKEKFEGNSSFWCGRPEIDKVE   85 (87)
Q Consensus         6 ~a~i~GD~I~vsVkk~~~~~kvkkg~v~~AvIVrtk~~~~r~dG~~i~F~~Na~VLl~~~~~p~GtRI~Gpv~~elr~kk   85 (87)
                      +|.+ ||+|+||||++.|..   +|++++|||||||++++|+||++++|||||+||||++++|+|||||||||+|||+ +
T Consensus        46 ~a~v-GD~IvvsVk~~~~~~---k~~v~~AvIVrtkk~~~R~dG~~i~FddNa~VLi~~~~~p~GTRI~GpV~~Elr~-k  120 (132)
T d1vqok1          46 KAGL-GDKITVSVTKGTPEM---RRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQ-R  120 (132)
T ss_dssp             EECT-TCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTSCEEEESSCEEEEECTTSCBSSSCBCSCBCHHHHH-H
T ss_pred             cccc-ceEEEEEEeecCCCc---ccceEEEEEEEecCcEECCCCCEEEcCCCEEEEECCCCCEeeeEEeccHhHHHHh-h
Confidence            6999 999999999999985   9999999999999999999999999999999999999999999999999999996 4


Q ss_pred             C
Q 037036           86 F   86 (87)
Q Consensus        86 ~   86 (87)
                      |
T Consensus       121 ~  121 (132)
T d1vqok1         121 F  121 (132)
T ss_dssp             S
T ss_pred             h
Confidence            6