Citrus Sinensis ID: 037045

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420----
Protein Sequence
MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCWQADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQQHCLLGWAIFSTGLELSQDYIIDGWAAQKFLASFNKIGDAHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE
Secondary Structure (PSIPRED)
ccEEEEEccccccHHHHHHHHHccccccccccEEEEEEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccEEEEEEcccHHHHHHccccEEcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccHHHHHHHHccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccccHHHHccccEEEEccccccccccccccccccccEEEEcccccccccccHHHcccccccEEEccccccccccHHHHccccccEEccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccHHHHHHHHHccccHHccccEEEEEEEcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccEEEEEEccccHccHHHccccccccccEEEEEEccHHHHHHcccccEcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHEcHHcccHHHHHHHHEHHcccccccEcHHHHHHHHHHHccccccccccccHccccEHHHHHHcccccHHHHHHHHHHHHccccHccccccHccccccEEEEEccccccccccccHHHccccEEEEEccccccHHcccHHHHccHcEEEEEccccccccccHHHHHHHHcEEEEcccccHHHcccccccHHHHHHHHHHHcHHcccccEEEc
Coil and Loop (DISEMBL)
mkkiciwgplgvgktTIMENLHhsigesrrfdIIFWenintdgniRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVLFLDgvsseinfkeigmhddhgrGKVVFACRSRefcwqadgvIHVQQLCQREAKKLFWEVVGVHlkkypdieLVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQQHCLLGWAIFSTGLELSQDYIIDGWAAQKFLASFNKIGdahtkrlslfgfpsstlpdmpncCEILTLILegkrleklptsfFDYMCHLQLLDLhetnigclppsisRLINLNALFLRSSCSLLLQLPAEIGRLqkleildvshtkvqclpseIGQLIELKYLRVSRvenvgnhthadagsgemISLNIISKLRLLEELIIE
Flexible Loop (DISEMBL)
mkkiciwgplgvGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADiiskelndrSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCWQADGVIHVQQLCQREAKKLFWEVVGVHlkkypdielVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADelrltsseekkeleevDRFFTLVYKNLSLEQQHCLLGWAIFSTGLELSQDYIIDGWAAQKFLASFNKIGDAHTKRLSLFGfpsstlpdmpNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNhthadagsgemislnIISKLRLLEELIIE
Low Complexity Region (SEG)
MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCWQADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADelrltsseekkeleeVDRFFTLVYKNLSLEQQHCLLGWAIFSTGLELSQDYIIDGWAAQKFLASFNKIGDAHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE
Disordered region (IsUnstruct)
***ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCWQADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELR**********EEVDRFFTLVYKNLSLEQQHCLLGWAIFSTGLELSQDYIIDGWAAQKFLASFNKIGDAHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI**
Disordered Region (DISOPRED)
MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERL*************DIISKELNDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCWQADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRL**********EVDRFFTLVYKNLSLEQQHCLLGWAIFSTGLELSQDYIIDGWAAQKFLASFNKIGDAHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE
Disordered Region (DISEMBL)
MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCWQADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQQHCLLGWAIFSTGLELSQDYIIDGWAAQKFLASFNKIGDAHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE
Disordered Region (DISPRO)
MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCWQADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQQHCLLGWAIFSTGLELSQDYIIDGWAAQKFLASFNKIGDAHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIxxxxxxxxxxxxxxxxxxxxxLRADIISKELNDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCWQADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQQHCLLGWAIFSTGLELSQDYIIDGWAAQKFLASFNKIGDAHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	424	2.2.26 [Sep-21-2011]
Q9LVT4	843	Probable disease resistan	yes	no	0.582	0.293	0.307	3e-23
O81825	919	Probable disease resistan	no	no	0.905	0.417	0.240	7e-23
Q9FG91	848	Probable disease resistan	no	no	0.908	0.454	0.251	7e-23
Q8RXS5	888	Probable disease resistan	no	no	0.615	0.293	0.285	1e-22
Q9LMP6	851	Probable disease resistan	no	no	0.639	0.318	0.282	2e-22
O23317	719	Probable disease resistan	no	no	0.740	0.436	0.284	3e-22
P60838	894	Probable disease resistan	no	no	0.886	0.420	0.262	8e-22
O82484	892	Putative disease resistan	no	no	0.875	0.415	0.268	4e-21
O64790	762	Probable disease resistan	no	no	0.879	0.489	0.255	5e-21
O64973	889	Disease resistance protei	no	no	0.584	0.278	0.280	3e-20

>sp|Q9LVT4|DRL37_ARATH Probable disease resistance protein At5g47250 OS=Arabidopsis thaliana GN=At5g47250 PE=2 SV=1

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 130/257 (50%), Gaps = 10/257 (3%)

Query: 6   IWGPLGVGKTTIMENLHHSIGE-SRRFDIIFWENINTDGNIRDIQEIILERLKV---NAK 61
           I+G  GVGKTT++  +++   E S  +D++ W   + D ++  IQ+ I ERL +   N  
Sbjct: 181 IFGMGGVGKTTLLTLINNKFVEVSDDYDVVIWVESSKDADVGKIQDAIGERLHICDNNWS 240

Query: 62  ELNNDLRADIISKELNDRS--YVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFC- 118
             +   +A  IS+ L D    +VL LD +  +++   IG+     + KVVF  RS++ C 
Sbjct: 241 TYSRGKKASEISRVLRDMKPRFVLLLDDLWEDVSLTAIGIPVLGKKYKVVFTTRSKDVCS 300

Query: 119 -WQADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKE 177
             +A+  I VQ L + +A  LF   + VH     +I  +A  IV +C G+P  L++I K 
Sbjct: 301 VMRANEDIEVQCLSENDAWDLF--DMKVHCDGLNEISDIAKKIVAKCCGLPLALEVIRKT 358

Query: 178 LANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQQHCLLGWAIFSTGL 237
           +A++S V  WR   D L    SE K   + + +   L Y  L  +   C L  A+F    
Sbjct: 359 MASKSTVIQWRRALDTLESYRSEMKGTEKGIFQVLKLSYDYLKTKNAKCFLYCALFPKAY 418

Query: 238 ELSQDYIIDGWAAQKFL 254
            + QD +++ W  + F+
Sbjct: 419 YIKQDELVEYWIGEGFI 435

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score =  108 bits (270), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 112/466 (24%), Positives = 204/466 (43%), Gaps = 82/466 (17%)

Query: 1   MKKICIWGPLGVGKTTIMENLHHSI---GESRRFDIIFWENINTDGNIRDIQEIILERL- 56
           ++KI +WG  GVGKTT++  L++ +     +++F ++ W  ++ D +++ +Q  I +RL 
Sbjct: 134 VQKIGVWGMGGVGKTTLVRTLNNDLLKYAATQQFALVIWVTVSKDFDLKRVQMDIAKRLG 193

Query: 57  KVNAKELNNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGMH---DDHGRGKVVFACR 113
           K   +E  N L   I  + ++ ++++L LD V   I+  ++G+    +     KVV   R
Sbjct: 194 KRFTREQMNQLGLTICERLIDLKNFLLILDDVWHPIDLDQLGIPLALERSKDSKVVLTSR 253

Query: 114 SREFCWQ--ADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYML 171
             E C Q   +  I V  L ++EA +LF   VG  +    +++ +A  +  EC G+P  +
Sbjct: 254 RLEVCQQMMTNENIKVACLQEKEAWELFCHNVG-EVANSDNVKPIAKDVSHECCGLPLAI 312

Query: 172 KLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQQHCLLGWA 231
             IG+ L  + +V +W+ T + L+ ++     E E++     L Y  L    + C L  A
Sbjct: 313 ITIGRTLRGKPQVEVWKHTLNLLKRSAPSIDTE-EKIFGTLKLSYDFLQDNMKSCFLFCA 371

Query: 232 IFSTGLELSQDYIIDGWAAQKFLASFNKIGDAHTKRLSLF-GFPSSTLPDMPNCCEIL-- 288
           +F     +    +I  W A+  L   +   D   + ++L      S L +  + C+ +  
Sbjct: 372 LFPEDYSIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKM 431

Query: 289 --------------------TLILEGK----------------------RLEKLPTS--- 303
                               +L++ G+                      +LE+LP +   
Sbjct: 432 HDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVIE 491

Query: 304 ---------------------FFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS 342
                                F     +L++LDL    I  LP S S L +L +L LR +
Sbjct: 492 GVETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLR-N 550

Query: 343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVS 388
           C  L  LP+ +  L KL+ LD+  + ++ LP  +  L  L+Y+ VS
Sbjct: 551 CKKLRNLPS-LESLVKLQFLDLHESAIRELPRGLEALSSLRYICVS 595

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1

 Score =  108 bits (270), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 203/442 (45%), Gaps = 57/442 (12%)

Query: 1   MKKICIWGPLGVGKTTIMENLHHSIGE-SRRFDIIFWENINTDGNIRDIQEIILERLKVN 59
           ++ + ++G  G+GKTT++E+L++   E    FD++ W  ++ D  +  IQ+ IL RL+ +
Sbjct: 172 IRTLGLYGMGGIGKTTLLESLNNKFVELESEFDVVIWVVVSKDFQLEGIQDQILGRLRPD 231

Query: 60  AKELNNDL---RADIISKELNDRSYVLFLDGVSSEINFKEIGMHDD--HGRGKVVFACRS 114
            KE   +    +A +I+  L  + +VL LD + SE++  +IG+         K+VF  RS
Sbjct: 232 -KEWERETESKKASLINNNLKRKKFVLLLDDLWSEVDLIKIGVPPPSRENGSKIVFTTRS 290

Query: 115 REFC--WQADGVIHVQQLCQREAKKLFWEVVG-VHLKKYPDIELVADSIVKECGGMPYML 171
           +E C   +AD  I V  L   EA +LF   VG + L+ + DI  +A  +  +C G+P  L
Sbjct: 291 KEVCKHMKADKQIKVDCLSPDEAWELFRLTVGDIILRSHQDIPALARIVAAKCHGLPLAL 350

Query: 172 KLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNL-SLEQQHCLLGW 230
            +IGK +  +  V  WR   + L     +     E +       Y +L + E + C L  
Sbjct: 351 NVIGKAMVCKETVQEWRHAINVLNSPGHKFPGMEERILPILKFSYDSLKNGEIKLCFLYC 410

Query: 231 AIFSTGLELSQDYIIDGWAAQKFL-----------ASFNKIG---DAH-------TKRLS 269
           ++F    E+ +D +I+ W  + ++             ++ IG    AH       T ++ 
Sbjct: 411 SLFPEDFEIEKDKLIEYWICEGYINPNRYEDGGTNQGYDIIGLLVRAHLLIECELTDKVK 470

Query: 270 LFGFPSSTL----PDMPNCCEILTLILEGKRLEKLPTSF-FDYMCHLQLLDLHETNIGCL 324
           +             D  N  E +  +  G  +  +P    ++ +  + L+      I C 
Sbjct: 471 MHDVIREMALWINSDFGNQQETIC-VKSGAHVRLIPNDISWEIVRQMSLISTQVEKIACS 529

Query: 325 P--PSIS-------RLINLNALFL----------RSSCSLLLQLPAEIGRLQKLEILDVS 365
           P  P++S       +L++++  F            S+   L++LP EI  L  L+ L++S
Sbjct: 530 PNCPNLSTLLLPYNKLVDISVGFFLFMPKLVVLDLSTNWSLIELPEEISNLGSLQYLNLS 589

Query: 366 HTKVQCLPSEIGQLIELKYLRV 387
            T ++ LP  + +L +L YL +
Sbjct: 590 LTGIKSLPVGLKKLRKLIYLNL 611

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 139/273 (50%), Gaps = 12/273 (4%)

Query: 11  GVGKTTIMENLHHSIGE-SRRFDIIFWENINTDGNIRDIQEIILERLKVNA---KELNND 66
           GVGKTT++ ++++        FDI+ W  ++ +  I+ IQ+ I E+L+ +    K+   D
Sbjct: 184 GVGKTTLLSHINNRFSRVGGEFDIVIWIVVSKELQIQRIQDEIWEKLRSDNEKWKQKTED 243

Query: 67  LRADIISKELNDRSYVLFLDGVSSEINFKEIGMH--DDHGRGKVVFACRSREFCWQ--AD 122
           ++A  I   L  + +VL LD + S+++  E+G+         K+VF  R +E C +   D
Sbjct: 244 IKASNIYNVLKHKRFVLLLDDIWSKVDLTEVGVPFPSRENGCKIVFTTRLKEICGRMGVD 303

Query: 123 GVIHVQQLCQREAKKLFWEVVG-VHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQ 181
             + V+ L   +A  LF + VG + L  +P+I  VA ++ K+C G+P  L +IG+ +A +
Sbjct: 304 SDMEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYK 363

Query: 182 SEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQ-QHCLLGWAIFSTGLELS 240
             V  WR+  D L  +++E     +E+       Y NL  EQ + C    A+F     + 
Sbjct: 364 RTVQEWRSAIDVLTSSAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIE 423

Query: 241 QDYIIDGWAAQKFLASFNKIGDAHTKRLSLFGF 273
           ++ ++D W  + F+   NK G A  +   + G 
Sbjct: 424 KNDLVDYWIGEGFIDR-NK-GKAENQGYEIIGI 454

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LMP6|DRL3_ARATH Probable disease resistance protein At1g15890 OS=Arabidopsis thaliana GN=At1g15890 PE=3 SV=2

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 143/280 (51%), Gaps = 9/280 (3%)

Query: 2   KKICIWGPLGVGKTTIMENLHHSIGESRR-FDIIFWENINTDGNIRDIQEIILERLKVNA 60
           + + ++G  GVGKTT++ ++++   E    FD++ W  ++ D     IQE IL RL ++ 
Sbjct: 175 RTLGLYGMGGVGKTTLLASINNKFLEGMNGFDLVIWVVVSKDLQNEGIQEQILGRLGLHR 234

Query: 61  --KELNNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGMH--DDHGRGKVVFACRSRE 116
             K++    +A  I   LN + +VL LD + SE++ ++IG+         K+VF  RS++
Sbjct: 235 GWKQVTEKEKASYICNILNVKKFVLLLDDLWSEVDLEKIGVPPLTRENGSKIVFTTRSKD 294

Query: 117 FC--WQADGVIHVQQLCQREAKKLFWEVVG-VHLKKYPDIELVADSIVKECGGMPYMLKL 173
            C   + DG + V  L   EA +LF + VG + L+ + DI  +A  + ++C G+P  L +
Sbjct: 295 VCRDMEVDGEMKVDCLPPDEAWELFQKKVGPIPLQSHEDIPTLARKVAEKCCGLPLALSV 354

Query: 174 IGKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQ-QHCLLGWAI 232
           IGK +A++  V  W+     L  +S E     E++       Y +L  E+ + C L  ++
Sbjct: 355 IGKAMASRETVQEWQHVIHVLNSSSHEFPSMEEKILPVLKFSYDDLKDEKVKLCFLYCSL 414

Query: 233 FSTGLELSQDYIIDGWAAQKFLASFNKIGDAHTKRLSLFG 272
           F    E+ ++ +I+ W  + F+        A+ K   + G
Sbjct: 415 FPEDYEVRKEELIEYWMCEGFIDGNEDEDGANNKGHDIIG 454

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O23317|DRL24_ARATH Probable disease resistance protein At4g14610 OS=Arabidopsis thaliana GN=At4g14610 PE=3 SV=1

 Score =  107 bits (266), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 162/348 (46%), Gaps = 34/348 (9%)

Query: 1   MKKICIWGPLGVGKTTIMENLHHSIGESRR-FDIIFWENINTDGNIRDIQEIILERLKVN 59
            K + ++G  GVGKTT++  ++    E+   FDI+ W  ++    I  IQE I +RL + 
Sbjct: 149 FKIMGLYGMGGVGKTTLLTQINKKFSETDGGFDIVMWVVVSKTSEIYRIQEDIAKRLGLT 208

Query: 60  AKEL---NNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGM-HDDHGRGKVV-FACRS 114
            +E    N + RA  I   L    +VL LD +  ++N + +G+ +     G +V F  RS
Sbjct: 209 GEEWDKKNENKRAVDIHNVLRRHKFVLLLDDIWEKVNLELVGVPYPSRENGSIVAFTTRS 268

Query: 115 REFCWQ--ADGVIHVQQLCQREAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMPYML 171
           R+ C +   D  + V  L   +A  LF   VG + LK +PDI  +A  + ++C G+P  L
Sbjct: 269 RDVCGRMGVDDPMQVSCLEPEDAWDLFQNKVGENTLKSHPDIPELAKQVAEKCRGLPLAL 328

Query: 172 KLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTL-VYKNLSLEQQHCLLGW 230
            +IG+ +A +S V  WR   DE     +E K  + +V R   L +  +L   +  C    
Sbjct: 329 NVIGETMACKSTVQEWRHAIDE-EWKKTEVK--MHDVVREMALWISSDLGKHKDQC---- 381

Query: 231 AIFSTGLELSQDYIIDGWAAQKFLASFNKIGDAHTKRLSLFGFPSSTLPDMPNCCEILTL 290
            I   G+ L     +  W A               +R+SL       +   P C ++ TL
Sbjct: 382 -IVRAGVGLHAVPEVKNWRA--------------VRRMSLMKNELEKILGCPTCPQLTTL 426

Query: 291 ILE-GKRLEKLPTSFFDYMCHLQLLDLH-ETNIGCLPPSISRLINLNA 336
           +L+   +L  +   FF +M +L +LDL   +++  LP  IS +   N 
Sbjct: 427 LLQKNHKLVNISGEFFRFMPNLVVLDLSWNSSLTGLPKKISEVETTNT 474

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  105 bits (261), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 198/426 (46%), Gaps = 50/426 (11%)

Query: 4   ICIWGPLGVGKTTIMENLHHSIGES-RRFDIIFWENINTDGNIRDIQEIILERLKVNAKE 62
           + ++G  GVGKTT++  +++   E    F ++ W  ++   +I  IQ  I +RL +  +E
Sbjct: 179 VGLYGMGGVGKTTLLTRINNKFSEKCSGFGVVIWVVVSKSPDIHRIQGDIGKRLDLGGEE 238

Query: 63  ---LNNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGM-HDDHGRG-KVVFACRSREF 117
              +N + RA  I   L  + +VL LD +  ++N + +G+ +     G KVVF  RSR+ 
Sbjct: 239 WDNVNENQRALDIYNVLGKQKFVLLLDDIWEKVNLEVLGVPYPSRQNGCKVVFTTRSRDV 298

Query: 118 C--WQADGVIHVQQLCQREAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMPYMLKLI 174
           C   + D  + V  L   EA +LF   VG + LK +PDI  +A  +  +C G+P  L +I
Sbjct: 299 CGRMRVDDPMEVSCLEPNEAWELFQMKVGENTLKGHPDIPELARKVAGKCCGLPLALNVI 358

Query: 175 GKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQ-QHCLLGWAIF 233
           G+ +A +  V  WR   D L  + + E   +E++       Y NL+ EQ + C L  ++F
Sbjct: 359 GETMACKRMVQEWRNAIDVLS-SYAAEFPGMEQILPILKYSYDNLNKEQVKPCFLYCSLF 417

Query: 234 STGLELSQDYIIDGWAAQKFLASFNKIGDAHTKRLSLFG--------------------- 272
                + ++ +ID W  + F+        A ++   + G                     
Sbjct: 418 PEDYRMEKERLIDYWICEGFIDENESRERALSQGYEIIGILVRACLLLEEAINKEQVKMH 477

Query: 273 --------FPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL 324
                   + +S L +    C    ++  G  L ++P         ++ + L E  I  L
Sbjct: 478 DVVREMALWIASDLGEHKERC----IVQVGVGLREVPK--VKNWSSVRRMSLMENEIEIL 531

Query: 325 PPSISRLINLNALFLRSSCSLLLQLPAEIGR-LQKLEILDVS-HTKVQCLPSEIGQLIEL 382
             S    + L  LFL+ + S LL +  E  R +  L +LD+S ++ ++ LP++I +L+ L
Sbjct: 532 SGS-PECLELTTLFLQKNDS-LLHISDEFFRCIPMLVVLDLSGNSSLRKLPNQISKLVSL 589

Query: 383 KYLRVS 388
           +YL +S
Sbjct: 590 RYLDLS 595

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  102 bits (255), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 195/428 (45%), Gaps = 57/428 (13%)

Query: 6   IWGPLGVGKTTIMENLHHSIGESRR-FDIIFWENINTDGNIRDIQEIILERLKVNAKELN 64
           ++G  GVGKTT++  +H+++ +++   DI+ W  +++D  I  IQE I E+L    KE N
Sbjct: 178 LYGMGGVGKTTLLTQIHNTLHDTKNGVDIVIWVVVSSDLQIHKIQEDIGEKLGFIGKEWN 237

Query: 65  N---DLRADIISKELNDRSYVLFLDGVSSEINFKEIGM--HDDHGRGKVVFACRSREFCW 119
                 +A  I   L+ + +VL LD +  +++  +IG+       + KVVF  RS + C 
Sbjct: 238 KKQESQKAVDILNCLSKKRFVLLLDDIWKKVDLTKIGIPSQTRENKCKVVFTTRSLDVCA 297

Query: 120 QADGV---IHVQQLCQREAKKLFWEVVG-VHLKKYPDIELVADSIVKECGGMPYMLKLIG 175
           +  GV   + VQ L   +A +LF E VG + L  +PDI  +A  +  +C G+P  L +IG
Sbjct: 298 RM-GVHDPMEVQCLSTNDAWELFQEKVGQISLGSHPDILELAKKVAGKCRGLPLALNVIG 356

Query: 176 KELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQ-QHCLLGWAIFS 234
           + +A +  V  W    D L   ++E     + +       Y NL+ +  + C    A++ 
Sbjct: 357 ETMAGKRAVQEWHHAVDVLTSYAAEFSGMDDHILLILKYSYDNLNDKHVRSCFQYCALYP 416

Query: 235 TGLELSQDYIIDGWAAQKFLASFNKIGDAHTKRLSLFGFPSSTLPDMPNCCEILTLILEG 294
               + +  +ID W  + F+      G+   +R    G+    L  +   C    L  EG
Sbjct: 417 EDYSIKKYRLIDYWICEGFID-----GNIGKERAVNQGY--EILGTLVRAC---LLSEEG 466

Query: 295 K-RLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSIS-----------------RLIN--- 333
           K +LE         M    L DL +    C+  + S                  L+N   
Sbjct: 467 KNKLEVKMHDVVREMALWTLSDLGKNKERCIVQAGSGLRKVPKVEDWGAVRRLSLMNNGI 526

Query: 334 -----------LNALFLRSSCSLLLQLPAEIGR-LQKLEILDVSHT-KVQCLPSEIGQLI 380
                      L  LFL+ + S L+ +  E  R ++KL +LD+S   ++  LP +I +L+
Sbjct: 527 EEISGSPECPELTTLFLQENKS-LVHISGEFFRHMRKLVVLDLSENHQLDGLPEQISELV 585

Query: 381 ELKYLRVS 388
            L+YL +S
Sbjct: 586 ALRYLDLS 593

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64790|DRL17_ARATH Probable disease resistance protein At1g61300 OS=Arabidopsis thaliana GN=At1g61300 PE=2 SV=2

 Score =  102 bits (254), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 188/419 (44%), Gaps = 46/419 (10%)

Query: 8   GPLGVGKTTIMENLHHSIGE-SRRFDIIFWENINTDGNIRDIQEIILERLKVNA---KEL 63
           G  GVGKTT+ + +H+   + S RFDI+ W  ++    +  +QE I E+L +     K  
Sbjct: 68  GMGGVGKTTLFKKIHNKFAKMSSRFDIVIWIVVSKGAKLSKLQEDIAEKLHLCDDLWKNK 127

Query: 64  NNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGMH--DDHGRGKVVFACRSREFCWQA 121
           N   +A  I + L  + +VL LD +  +++ + IG+    +  + KV F  R ++ C + 
Sbjct: 128 NESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGVPYPSEVNKCKVAFTTRDQKVCGEM 187

Query: 122 DGVIHVQQLC--QREAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMPYMLKLIGKEL 178
                +Q  C    +A +LF   VG + L+  P I  +A  + ++C G+P  L +IG+ +
Sbjct: 188 GDHKPMQVKCLEPEDAWELFKNKVGDNTLRSDPVIVELAREVAQKCRGLPLALSVIGETM 247

Query: 179 ANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQ-QHCLLGWAIFSTGL 237
           A+++ V  W    D L  +++E      ++       Y +L  E  + C L  A+F    
Sbjct: 248 ASKTMVQEWEHAIDVLTRSAAEFSNMGNKILPILKYSYDSLGDEHIKSCFLYCALFPEDD 307

Query: 238 ELSQDYIIDGWAAQKFLASFNKIGDAHTKRLSLFGFPSSTLPDMPNCCEILTLILE---- 293
           E+  + +ID W  + F+     I  A  K   + G  + TL ++        +++     
Sbjct: 308 EIYNEKLIDYWICEGFIGEDQVIKRARNKGYEMLG--TLTLANLLTKVGTEHVVMHDVVR 365

Query: 294 ----------GKRLEKL------------PTSFFDYMCHLQLLDLHETNIGCLPPSISRL 331
                     GK+ E                  +  +  + L+D H   I C     S+ 
Sbjct: 366 EMALWIASDFGKQKENFVVRARVGLHERPEAKDWGAVRRMSLMDNHIEEITCE----SKC 421

Query: 332 INLNALFLRSSCSLLLQLPAEIGR-LQKLEILDVSHTK-VQCLPSEIGQLIELKYLRVS 388
             L  LFL+S  + L  L  E  R +QKL +LD+S+ +    LP +I  L+ L++L +S
Sbjct: 422 SELTTLFLQS--NQLKNLSGEFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLS 478

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 99.8 bits (247), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 130/260 (50%), Gaps = 12/260 (4%)

Query: 6   IWGPLGVGKTTIMENLHHSIGE-SRRFDIIFWENINTDGNIRDIQEIILERLKVNA---K 61
           ++G  GVGKTT++  +++   +   RFD++ W  ++    +R IQ  I E++ +      
Sbjct: 181 LYGMGGVGKTTLLTKINNKFSKIDDRFDVVIWVVVSRSSTVRKIQRDIAEKVGLGGMEWS 240

Query: 62  ELNNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGM---HDDHGRGKVVFACRSREFC 118
           E N++  A  I   L  R +VL LD +  ++N K +G+     D+G  KV F  RSR+ C
Sbjct: 241 EKNDNQIAVDIHNVLRRRKFVLLLDDIWEKVNLKAVGVPYPSKDNG-CKVAFTTRSRDVC 299

Query: 119 WQ--ADGVIHVQQLCQREAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMPYMLKLIG 175
            +   D  + V  L   E+  LF   VG + L  +PDI  +A  + ++C G+P  L +IG
Sbjct: 300 GRMGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIG 359

Query: 176 KELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLE-QQHCLLGWAIFS 234
           + +A +  V  W    D L  ++ +     +E+       Y NL+ E  + C L  ++F 
Sbjct: 360 EAMACKRTVHEWCHAIDVLTSSAIDFSGMEDEILHVLKYSYDNLNGELMKSCFLYCSLFP 419

Query: 235 TGLELSQDYIIDGWAAQKFL 254
               + ++ ++D W ++ F+
Sbjct: 420 EDYLIDKEGLVDYWISEGFI 439

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
147798654	1864	hypothetical protein VITISV_038474 [Viti	0.898	0.204	0.315	1e-37
147779179	984	hypothetical protein VITISV_043194 [Viti	0.948	0.408	0.300	3e-35
147778922	1001	hypothetical protein VITISV_020980 [Viti	0.950	0.402	0.293	5e-35
297739476	1781	unnamed protein product [Vitis vinifera]	0.898	0.213	0.292	1e-34
297739495	979	unnamed protein product [Vitis vinifera]	0.966	0.418	0.286	9e-33
225461744	1016	PREDICTED: probable disease resistance p	0.893	0.373	0.266	1e-31
297739493	982	unnamed protein product [Vitis vinifera]	0.905	0.391	0.260	6e-31
302142868	984	unnamed protein product [Vitis vinifera]	0.879	0.379	0.265	2e-30
227438263	813	disease resistance protein [Brassica rap	0.943	0.492	0.286	1e-29
317106749	1087	JHL25H03.3 [Jatropha curcas]	0.806	0.314	0.276	5e-27

>gi|147798654|emb|CAN63327.1| hypothetical protein VITISV_038474 [Vitis vinifera]

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 133/421 (31%), Positives = 218/421 (51%), Gaps = 40/421 (9%)

Query: 1    MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA 60
            +++I IWG +G GKTT+M+NL++    ++ FDI+ W  ++ + + + +Q+ I++RLK+N 
Sbjct: 1108 IRRIGIWGTVGTGKTTVMQNLNNHQDIAKMFDIVIWVTVSKESSTKKLQDAIMQRLKMNM 1167

Query: 61   K-ELNNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFC- 118
            +  ++    +  IS+EL  R  ++ LD V   I+   +   + +   KVV A    + C 
Sbjct: 1168 EGTVSIKENSHRISEELKGRKCLILLDEVYDFIDLHVVMGINHNQESKVVLASTIGDICN 1227

Query: 119  -WQADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKE 177
              +AD +I+V+ L   EA  +F E +G  +   P IE VA+ +V+ECGG+P ++ ++   
Sbjct: 1228 DMEADELINVKPLSDHEAFNMFKEKLGRSIYS-PQIERVAEQVVRECGGLPLLINIVAMI 1286

Query: 178  LANQSE-VAIWRATADELR-LTSSEEKKELEEVDRFFTLVYKNL-SLEQQHCLLGWAIFS 234
               + E +++W    D L+ L   ++ + ++ V  F    Y  L S  ++ C L  A+F 
Sbjct: 1287 FRTKGEDISLW---IDGLKHLQRWKDIEGMDHVIEFLKFCYDYLGSDTKKACYLYCALFP 1343

Query: 235  TGLELSQDY----------IIDGWA--------AQKFLA----SFNKIGDAH----TKRL 268
               +++++           I+   A          KFLA          D+       R+
Sbjct: 1344 GEYDINREVGKGKCVKMNRILRKMALKISLQSDGSKFLAKPCEGLQDFPDSKEWEDASRI 1403

Query: 269  SLFGFPSSTLPDMPNCCEILTLILE-GKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS 327
            SL      TLP    C  + TL+L+    L  +P  FF+ M  L++LDLH T I  LP S
Sbjct: 1404 SLMNNQLCTLPKSLRCHNLSTLLLQRNNGLSAIPFPFFNSMHLLRVLDLHGTGIMLLPSS 1463

Query: 328  ISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRV 387
            IS+LI+L  L+L +SC  L+ L  EI  L KLE+LD+  TK+      IG LI LK LR+
Sbjct: 1464 ISKLIHLRGLYL-NSCPHLIGLLPEIRALTKLELLDIRRTKIPF--RHIGSLIWLKCLRI 1520

Query: 388  S 388
            S
Sbjct: 1521 S 1521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779179|emb|CAN71735.1| hypothetical protein VITISV_043194 [Vitis vinifera]

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 142/473 (30%), Positives = 222/473 (46%), Gaps = 71/473 (15%)

Query: 1   MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA 60
           +++I IWG +G GKTTIM+ L++     R FDI+ W  +  + ++   Q+ I++RL++N 
Sbjct: 181 IRRIGIWGTVGTGKTTIMKYLNNHDNIDRMFDIVIWVTVPKEWSVVGFQQKIMDRLQLNM 240

Query: 61  KELNN-DLRADIISKELNDRSYVLFLDGVSSEINFKE-IGMHDDHGRGKVVFACRSREFC 118
               + +    II +EL  +  ++ LD V   I  ++ IG+HD     KVV A R R  C
Sbjct: 241 GSATDIEKNTQIIFEELKKKKCLILLDEVCHLIELEKIIGVHDIQN-CKVVLASRDRGIC 299

Query: 119 --WQADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGK 176
                D +I+V+ L   EA K+F E VG  +   P I  VA  +VKEC G+P ++  + K
Sbjct: 300 RDMDVDQLINVKPLSDDEALKMFKEKVGECINNIPKIIQVAQLLVKECWGLPLLIDKLAK 359

Query: 177 ELANQS-EVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNL-SLEQQHCLLGWAIFS 234
               +  ++  WR     L++  ++E K  +EV       Y +L S  ++ C L  A++S
Sbjct: 360 TFKRRGRDIQCWRDGGRSLQIWLNKEGK--DEVLELLEFCYNSLDSDAKKDCFLYCALYS 417

Query: 235 TGLELSQDYIIDGWAAQKFL------------------ASFNKIGDAHTKRL-------- 268
              E+    +++ W  + F+                  +S NK      + L        
Sbjct: 418 EEPEIHIRCLLECWRLEGFIRNDGHEILSHLINVSLLESSGNKKSVKMNRVLREMALKIS 477

Query: 269 ------SLFGFPSSTLPDMPN-------------------------CCEILTLILE-GKR 296
                      PS  L + PN                         C ++LTL+L+  + 
Sbjct: 478 QQREDSKFLAKPSEGLKEPPNLEEWKQVHRISLMDNELHSLPETPDCRDLLTLLLQRNEN 537

Query: 297 LEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRL 356
           L  +P  FF  MC L++LDLH T I  LP S+  L  L  L+L +SC+ L+ LP +I  L
Sbjct: 538 LIAIPKLFFTSMCCLRVLDLHGTGIKSLPSSLCNLTVLRGLYL-NSCNHLVGLPTDIEAL 596

Query: 357 QKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISL 409
           ++LE+LD+  TK+     +I  L  LK LRVS V N G  +H    SG + S 
Sbjct: 597 KQLEVLDIRATKLSL--CQIRTLTWLKLLRVS-VSNFGKGSHTQNQSGYVSSF 646

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778922|emb|CAN64818.1| hypothetical protein VITISV_020980 [Vitis vinifera]

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 139/473 (29%), Positives = 215/473 (45%), Gaps = 70/473 (14%)

Query: 1   MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA 60
           +K+I IWG LG GKTTI+ENL+     ++ FDI+ W  +  + +   +Q+ I+ RL ++ 
Sbjct: 198 IKRIGIWGMLGTGKTTIIENLNTHDNINKMFDIVIWVTVPKEWSEXGLQQKIMHRLNLDM 257

Query: 61  KELNN-DLRADIISKELNDRSYVLFLDGVSSEINFKE-IGMHDDHGRGKVVFACRSREFC 118
               N +     I +EL ++  ++ LD V   I  K  IG+H      KVV A R    C
Sbjct: 258 GSPTNIEENRQKICEELKNKKCLILLDEVCDPIELKNVIGIHGIKD-CKVVLASRDLGIC 316

Query: 119 WQ--ADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGK 176
            +   D  I+V+ L   EA  +F E VG  +   P +  V   +V+ECGG+P ++    K
Sbjct: 317 REMDVDETINVKPLLSDEAFNMFKEKVGEFINSIPRVVQVGQLVVRECGGLPLLIDKFAK 376

Query: 177 ELANQ-SEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNL-SLEQQHCLLGWAIFS 234
                   V  WR  A +  L +S  K+ ++ V       Y +L S  ++ C L   +FS
Sbjct: 377 TFKRMGGNVQHWRDAA-QGSLRNSMNKEGMDAVLERLEFCYNSLDSDAKKDCFLYCXLFS 435

Query: 235 TGLELSQDYIIDGWAAQKFL-------------------------ASFNKIGDAHTKRLS 269
              E+    +++ W  + F+                            NK+      ++S
Sbjct: 436 EECEIYIRCLVEYWRVEGFIDNNGHEILSHLINVSLLESCGNKISVKMNKVIREMALKVS 495

Query: 270 L-------FGFPSSTLPDMPN-------------------------CCEILTLILE-GKR 296
           L          P   L ++PN                         C ++LTL+L+  + 
Sbjct: 496 LQRKDSXFLAKPCEGLHELPNPEEWQQASRISLMDNELHSLPETPDCRDLLTLLLQRNEN 555

Query: 297 LEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRL 356
           L  +P  FF  MC L++LDLH T I  LP S+ RLI L  L+L +SC  L+ LP +I  L
Sbjct: 556 LIAIPKLFFTSMCCLRVLDLHGTGIESLPSSLCRLICLGGLYL-NSCINLVGLPTDIDAL 614

Query: 357 QKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISL 409
           ++LE+LD+  TK+     +I  L  LK LR+S + N G  +H    SG + S 
Sbjct: 615 ERLEVLDIRGTKLSL--CQIRTLTWLKLLRIS-LSNFGKGSHTQNQSGYVSSF 664

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739476|emb|CBI29658.3| unnamed protein product [Vitis vinifera]

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 135/461 (29%), Positives = 218/461 (47%), Gaps = 80/461 (17%)

Query: 1    MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA 60
            +++I IWG +G GKTTIM+NL++    ++ FDI+ W  ++ + + + +Q+ IL+RLK+N 
Sbjct: 1173 IRRIGIWGTVGTGKTTIMQNLNNHQDIAKMFDIVIWVTVSKESSTKKLQDAILQRLKMNM 1232

Query: 61   K-ELNNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFC- 118
            +  ++    +  IS+EL  R  ++ LD V   I+   +   +D+   KVV A    + C 
Sbjct: 1233 EGTVSIKENSHRISEELKGRKCLILLDEVYDFIDLHVVMGINDNQESKVVLASTIGDICN 1292

Query: 119  -WQADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKE 177
              +AD +I+V+ L   EA  +F E +G  +   P IE VA+ +V+ECGG+P ++ ++   
Sbjct: 1293 DMEADELINVKPLSDHEAFNMFKEKLGRSIYS-PQIERVAEQVVRECGGLPLLINIVAMI 1351

Query: 178  LANQSE-VAIWRATADELR-LTSSEEKKELEEVDRFFTLVYKNL-SLEQQHCLLGWAIFS 234
               + E +++W    D L+ L   E+ + ++ V  F    Y  L S  ++ C L  A+F 
Sbjct: 1352 FRTKGEDISLW---IDGLKHLQRWEDIEGMDHVIEFLKFCYDYLGSDTKKACYLYCALFP 1408

Query: 235  TGLELSQDYIIDGWAAQKFLASFNKIGDAHTK---------------------------- 266
               +++ DY+++ W A+ F+       DA  +                            
Sbjct: 1409 GEYDINVDYLLECWKAEGFIPGTVAFRDARHQGHVILDDLINLSLLERSGKGKCVKMNRI 1468

Query: 267  ------RLSL-------FGFPSSTLPDMPNCCE---ILTLILEGKRLEKLPTSF------ 304
                  ++SL          P   L D P+  E      + L   +L  LP S       
Sbjct: 1469 LRKMALKISLQSDGSKFLAKPCEGLQDFPDSKEWEDASRISLMNNQLCTLPKSLRCHNLS 1528

Query: 305  --------------FDYMCHLQLL---DLHETNIGCLPPSISRLINLNALFLRSSCSLLL 347
                          F +   + LL   DLH T I  LP SIS+LI+L  L+L +SC  L+
Sbjct: 1529 TLLLQRNNGLSAIPFPFFNSMHLLRVLDLHGTGIMLLPSSISKLIHLRGLYL-NSCPHLI 1587

Query: 348  QLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVS 388
             L  EI  L KLE+LD+  TK+      IG LI LK LR+S
Sbjct: 1588 GLLPEIRALTKLELLDIRRTKIPF--RHIGSLIWLKCLRIS 1626

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739495|emb|CBI29677.3| unnamed protein product [Vitis vinifera]

 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 138/481 (28%), Positives = 219/481 (45%), Gaps = 71/481 (14%)

Query: 1   MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVN- 59
           +K+I IWG +G GKTTI+ENL+     ++ FDI+    +  + +   +Q+ I+ RL +N 
Sbjct: 176 IKRIGIWGMVGTGKTTIIENLNTHDNINKMFDIVIRVTVPKEWSEVGLQQKIMRRLNLNM 235

Query: 60  AKELNNDLRADIISKELNDRSYVLFLDGVSSEINFKE-IGMHDDHGRGKVVFACRSREFC 118
               + +    II +EL  +  ++ LD V   I  K  IG+H      KVV A R    C
Sbjct: 236 GGPTDIEENTQIIFEELKKKKCLILLDEVCHPIELKNVIGIHGIQD-CKVVLASRDLGIC 294

Query: 119 WQ--ADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGK 176
            +   D  I+V+ L   EA  +F E VG  +   P +  V   +V+ECGG+P ++    K
Sbjct: 295 REMDVDETINVKPLSSDEAFNMFKEKVGEFIYSTPRVLQVGQLVVRECGGLPLLIDKFAK 354

Query: 177 ELANQ-SEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNL-SLEQQHCLLGWAIFS 234
                   V  WR     LR  +S  K+ ++ V       Y +L S  ++ C L  A++S
Sbjct: 355 TFKRMGGNVQHWRDAQGSLR--NSMNKEGMDAVLERLEFCYNSLDSDAKKDCFLYCALYS 412

Query: 235 TGLELSQDYIIDGWAAQKFL-------------------------ASFNKIGD------- 262
              E+    +++ W  + F+                            NK+         
Sbjct: 413 EECEIYIRCLVEYWRVEGFIDNNGHEILSHLINVSLLESSGNKKNVKMNKVLREMALKIL 472

Query: 263 AHTKRLSLFGFPSSTL-------------------------PDMPNCCEILTLILEG-KR 296
           + T+ L     P   L                         P+ P+C +++TL+L+  K 
Sbjct: 473 SETEHLRFLAKPREGLHEPPNPEEWQQASRISLMDNELHSLPETPDCRDLVTLLLQRYKN 532

Query: 297 LEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRL 356
           L  +P  FF  MC L++LDLH T I  LP S+  LI L  L+L +SC+ L+ LP +I  L
Sbjct: 533 LVAIPELFFTSMCCLRVLDLHGTGIKSLPSSLCNLIVLRGLYL-NSCNHLVGLPTDIEAL 591

Query: 357 QKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLR 416
           ++LE+LD+  TK+     +I  L  LK+LR+S + N G  +H    SG + S   + + R
Sbjct: 592 KQLEVLDIRGTKLNL--CQIRTLAWLKFLRIS-LSNFGKGSHTQNQSGYVSSFVSLEEFR 648

Query: 417 L 417
           +
Sbjct: 649 I 649

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461744|ref|XP_002283414.1| PREDICTED: probable disease resistance protein At4g27220-like [Vitis vinifera]

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 222/469 (47%), Gaps = 90/469 (19%)

Query: 1   MKKICIWGPLGVGKTTIMENLHHSIGESR-RFDIIFWENINTDGNIRDIQEIILERLKVN 59
           ++ I +WG  G+GKTTI+ ++H+ + E +  F +++W  ++ D ++R +Q++I E++ ++
Sbjct: 165 IQSIGVWGMGGIGKTTIVTHIHNLLLEKKDTFGLVYWVTVSKDSSVRKLQDVIAEKINLD 224

Query: 60  -AKELNNDLRADIISKELN-DRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREF 117
            +KE +  LR+ ++ + L  ++ +VL  D V      +E+G+     RGK++   RSRE 
Sbjct: 225 LSKEEDERLRSALLFEALQKEKKFVLIFDDVWEVYPPREVGIPIGVDRGKLIITTRSREV 284

Query: 118 CWQ--ADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDI----ELVADSIVKECGGMPYML 171
           C +     +I V+ L + EA    WE+    L++Y  +    E +A  IV+EC G+P  +
Sbjct: 285 CLKMGCKEIIKVEPLYEEEA----WELFNKTLERYNALSQKEEKIAKDIVRECAGLPLAI 340

Query: 172 KLIGKELANQSEVAIWRATADELRLTSSEEKKELE-EVDRFFTLVYKNLSLEQ-QHCLLG 229
               + ++   ++A WR   +ELR         +E +V +     Y  L+ E+ Q CLL 
Sbjct: 341 VTTARSMSVAYDIAEWRNALNELREHVKGHTINMENDVFKILEFSYNRLNDEKLQECLLY 400

Query: 230 WAIFSTGLELSQDYIIDGWAAQKFL--------------ASFNKIGDA------------ 263
            A+F    ++ +  +I  W A+  +              A  NK+ +             
Sbjct: 401 CALFPEDYKIRRVLLIRYWIAEGLIEEMGSRQAERDRGHAILNKLENVCLLEKCENGKCV 460

Query: 264 --H----------TKRLSLFGFPS-STLPDMPN--------------------------C 284
             H          T++ S F   +   L D+PN                          C
Sbjct: 461 KMHDVIRDMAINITRKNSRFMVKTRRNLEDLPNEIEWSNNVERVSLMDSHLSTLMFVPNC 520

Query: 285 CEILTLILEGKRL--------EKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNA 336
            ++ TL L+  +         E LP SFF +M  L++LDL  TNI  LP SI  ++NL A
Sbjct: 521 PKLSTLFLQKPKFSYPPKGLHEGLPNSFFVHMLSLRVLDLSCTNIALLPDSIYDMVNLRA 580

Query: 337 LFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYL 385
           L L   C  L Q+   + +L++L  LD+S  +++ +P+ I +L+ LK+ 
Sbjct: 581 LIL-CECRELKQV-GSLAKLKELRELDLSWNEMETIPNGIEELVLLKHF 627

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739493|emb|CBI29675.3| unnamed protein product [Vitis vinifera]

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 202/415 (48%), Gaps = 31/415 (7%)

Query: 1   MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA 60
           +++I +WG +G GKTTIM+NL++    ++ FDI+ W  ++ + +I  +Q+ I+ +LK++ 
Sbjct: 174 IQRIGVWGTVGTGKTTIMQNLNNHEQIAKMFDIVIWVTVSKEWSIEKLQDAIMRQLKLDM 233

Query: 61  KELNN-DLRADIISKELNDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCW 119
           +   + +  A  IS+EL ++ Y++ LD V   I+   +    ++   KVV A R+R  C+
Sbjct: 234 ERFADIEENARRISEELKEKKYLVLLDEVQENIDLNAVMGIPNNQDSKVVLASRNRCVCY 293

Query: 120 --QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKE 177
             +AD +I+V++L   +A  +F E VG H    P I+ +A+ +VKEC G+P ++  IG+ 
Sbjct: 294 EMEADELINVKRLSPADAWNMFQEKVG-HPISSPLIKPIAEQVVKECDGLPLLIDRIGRT 352

Query: 178 LANQ-SEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQQHCLLGWAIFSTG 236
              +  +V++WR   + LR   S + + ++EV  F    Y+ L   ++ C L  A++   
Sbjct: 353 FRKKGKDVSLWRDGLNRLRRWESVKTEGMDEVLDFLKFCYEELDRNKKDCFLYGALYPEE 412

Query: 237 LELSQDYIIDGWAAQKFLASFNKIGD-----------AHTKRLSLFGFPSSTLPDMPNCC 285
            E+  DY+++ W A+  +   +++ D            H    +L         D   C 
Sbjct: 413 CEIYIDYLLECWNAEGLIHDADELVDNTNVFRDARDKGHAILDALIDVSLLERSDEKKCV 472

Query: 286 EILTLILE-----------GKRLEKLPTSFFDYMCHLQLLDLHETNIG----CLPPSISR 330
           ++  ++ +            K L K      D+    +  D    ++     C  P    
Sbjct: 473 KMNKVLRKMALKISSQSNGSKFLVKPCEGLQDFPDRKEWEDASRISLMGNQLCTLPEFLH 532

Query: 331 LINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYL 385
             NL+ L L+ +  L+         ++ L +LD+  T ++ LPS I  LI L+ L
Sbjct: 533 CHNLSTLLLQMNNGLIAIPEFFFESMRSLRVLDLHGTGIESLPSSISYLICLRGL 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142868|emb|CBI20163.3| unnamed protein product [Vitis vinifera]

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 123/463 (26%), Positives = 218/463 (47%), Gaps = 90/463 (19%)

Query: 1   MKKICIWGPLGVGKTTIMENLHHSIGESR-RFDIIFWENINTDGNIRDIQEIILERLKVN 59
           ++ I +WG  G+GKTTI+ ++H+ + E +  F +++W  ++ D ++R +Q++I E++ ++
Sbjct: 165 IQSIGVWGMGGIGKTTIVTHIHNLLLEKKDTFGLVYWVTVSKDSSVRKLQDVIAEKINLD 224

Query: 60  -AKELNNDLRADIISKELN-DRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREF 117
            +KE +  LR+ ++ + L  ++ +VL  D V      +E+G+     RGK++   RSRE 
Sbjct: 225 LSKEEDERLRSALLFEALQKEKKFVLIFDDVWEVYPPREVGIPIGVDRGKLIITTRSREV 284

Query: 118 CWQ--ADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDI----ELVADSIVKECGGMPYML 171
           C +     +I V+ L + EA    WE+    L++Y  +    E +A  IV+EC G+P  +
Sbjct: 285 CLKMGCKEIIKVEPLYEEEA----WELFNKTLERYNALSQKEEKIAKDIVRECAGLPLAI 340

Query: 172 KLIGKELANQSEVAIWRATADELRLTSSEEKKELE-EVDRFFTLVYKNLSLEQ-QHCLLG 229
               + ++   ++A WR   +ELR         +E +V +     Y  L+ E+ Q CLL 
Sbjct: 341 VTTARSMSVAYDIAEWRNALNELREHVKGHTINMENDVFKILEFSYNRLNDEKLQECLLY 400

Query: 230 WAIFSTGLELSQDYIIDGWAAQKFL--------------ASFNKIGDA------------ 263
            A+F    ++ +  +I  W A+  +              A  NK+ +             
Sbjct: 401 CALFPEDYKIRRVLLIRYWIAEGLIEEMGSRQAERDRGHAILNKLENVCLLEKCENGKCV 460

Query: 264 --H----------TKRLSLFGFPS-STLPDMPN--------------------------C 284
             H          T++ S F   +   L D+PN                          C
Sbjct: 461 KMHDVIRDMAINITRKNSRFMVKTRRNLEDLPNEIEWSNNVERVSLMDSHLSTLMFVPNC 520

Query: 285 CEILTLILEGKRL--------EKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNA 336
            ++ TL L+  +         E LP SFF +M  L++LDL  TNI  LP SI  ++NL A
Sbjct: 521 PKLSTLFLQKPKFSYPPKGLHEGLPNSFFVHMLSLRVLDLSCTNIALLPDSIYDMVNLRA 580

Query: 337 LFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQL 379
           L L   C  L Q+   + +L++L  LD+S  +++ +P+ I +L
Sbjct: 581 LIL-CECRELKQV-GSLAKLKELRELDLSWNEMETIPNGIEEL 621

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227438263|gb|ACP30621.1| disease resistance protein [Brassica rapa subsp. pekinensis]

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 210/458 (45%), Gaps = 58/458 (12%)

Query: 6   IWGPLGVGKTTIMENLHHSIG-ESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELN 64
           I+G  GVGKTT++ ++++ +  E   FD++ W  ++ D   + IQ+ IL RL+V+ KE  
Sbjct: 179 IYGMGGVGKTTLLTHINNKLDKEVNGFDVVIWVVVSQDLQYKGIQDQILRRLRVD-KEWE 237

Query: 65  NDL---RADIISKELNDRSYVLFLDGVSSEINFKEIGMH--DDHGRGKVVFACRSREFC- 118
           N     +A  I   L  + +VL LD + SE++  +IG+         K+VF  RS+E C 
Sbjct: 238 NQTEEEKASSIDDILGRKKFVLLLDDLWSEVDLNKIGVPRPTQENGSKIVFTTRSKEVCS 297

Query: 119 -WQADGVIHVQQLCQREAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMPYMLKLIGK 176
             +AD  + +  L   EA +LF  +VG   LK + DI  +A  I ++C G+P  L +IGK
Sbjct: 298 DMEADDKLQIDCLPANEAWELFRSIVGEDTLKLHQDIPTLAKKICEKCYGLPLALNVIGK 357

Query: 177 ELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQ-QHCLLGWAIFST 235
            +  + +V  WR     L  +S E     E++       Y  L  E  + C L  ++F  
Sbjct: 358 AMKYKEDVHEWRHAKKVLSTSSHEFPGMEEKILSILKFSYDGLKEENVKSCFLYCSLFPE 417

Query: 236 GLELSQDYIIDGWAAQKFLAS----------------------------FNKIGDAHTKR 267
             E+ ++ +I+ W  + F+                               + I  + ++R
Sbjct: 418 DYEIKKEELIEYWINEGFINGKRDEDGRSTSAKEEEKQCVKSGVKLSCIPDDINWSVSRR 477

Query: 268 LSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS 327
           +SL       +   P C  + TL L+G  LE +P  FF +M  L +LDL    +  LP  
Sbjct: 478 ISLMSNQIEKISCCPECPNLSTLFLQGNNLEGIPGEFFQFMKALVVLDLSHNLLWELPEE 537

Query: 328 ISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRV 387
           I  L +L  L L  S + +  L   +  L+KL  LD+  T +  +      L  L+ L++
Sbjct: 538 ICSLTSLQCLSL--SFTFIRSLSVGLKGLRKLISLDLEWTSLTSIDGIGTSLPNLQVLKL 595

Query: 388 --SRVENVGNHTHADAGSGEMISLNIISKLRLLEELII 423
             SRV       + DA S        I +L+LLE L I
Sbjct: 596 YHSRV-------YIDARS--------IEELQLLEHLKI 618

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106749|dbj|BAJ53243.1| JHL25H03.3 [Jatropha curcas]

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 192/426 (45%), Gaps = 84/426 (19%)

Query: 4   ICIWGPLGVGKTTIMENLHHSIGES-RRFDIIFWENINTDGNIRDIQEIILERLKVN--- 59
           + I+G  GVGKTT++  +++    S   FD++ W  ++ D     IQE I +++ +    
Sbjct: 399 VGIYGMGGVGKTTLLNQINNKFASSTHNFDVVIWVVVSRDLKPDKIQEDIWKKVGIFDET 458

Query: 60  -AKELNNDLRADIISKELNDRSYVLFLDGVSSEINFKEIG--MHDDHGRGKVVFACRSRE 116
            AK++ ++   DI  + L+   +VLFLD +  +++ ++IG  +   HG   +VF  R  +
Sbjct: 459 WAKKIPSEKAEDIFYR-LSRTKFVLFLDDLWQKVDLRDIGVPLQKKHG-SMIVFTTRFYK 516

Query: 117 FCWQ--ADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLI 174
            C Q  A  ++ V+ L  RE+  LF E VG      P+I  +A  +VKECGG+P  L  I
Sbjct: 517 ICRQMEAQKIMKVEPLNPRESWTLFQEKVG---DIAPNILPLAKDVVKECGGLPLALITI 573

Query: 175 GKELANQSEVAIW-------RATADELRLTSSEEKKELE-EVDRFFTLVYKNLSLEQ-QH 225
           G  +A +  +  W       R+ A  L     E  +++E EV       Y +L  E+ + 
Sbjct: 574 GHAMAGKDALQEWEHALEVLRSYASSLHGMEDEVFQDMEVEVFAILKFSYDSLHSEKVKS 633

Query: 226 CLLGWAIFSTGLELSQDYIIDGWAAQKFLAS----------------------------- 256
           C L  ++F    +  +D ++  W ++ F A                              
Sbjct: 634 CFLYCSLFPEDFKFLKDDLVHYWISENFCARNEGYTIIGSLVRVCLLEENGKYVKMHDVI 693

Query: 257 ------------------FNKIGDAHTK-----------RLSLFGFPSSTLPDMPNCCEI 287
                             F ++G   TK           R+SL      ++P++P C ++
Sbjct: 694 RDMALWVACKYEKDKEKFFVQVGAQLTKFPAVKEWEGSKRMSLMANSFKSIPEVPRCGDL 753

Query: 288 LTLILEGKR-LEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLL 346
            TL L   R LE++   FF YM  L +LDL ET I  LP  IS+L +L  L LRS  + +
Sbjct: 754 STLFLGHNRFLEEISGDFFRYMNSLTVLDLSETCIKKLPEGISKLTSLQYLNLRS--TRI 811

Query: 347 LQLPAE 352
            +LP E
Sbjct: 812 TRLPVE 817

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.617	0.343	0.261	2.2e-30
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.617	0.291	0.264	1.9e-29
TAIR|locus:2170892	848	AT5G43730 [Arabidopsis thalian	0.622	0.311	0.280	4.8e-29
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.587	0.280	0.270	5.6e-29
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.613	0.268	0.262	8.2e-29
TAIR|locus:2171579	843	AT5G47250 [Arabidopsis thalian	0.582	0.293	0.291	2.4e-28
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.627	0.312	0.274	1.6e-27
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.582	0.276	0.279	3.8e-27
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.615	0.264	0.228	1.3e-26
TAIR|locus:2171589	948	AT5G47260 [Arabidopsis thalian	0.582	0.260	0.275	5.2e-26

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 2.2e-30, Sum P(2) = 2.2e-30
 Identities = 71/272 (26%), Positives = 124/272 (45%)

Query:    11 GVGKTTIMENLHHSIGE-SRRFDIIFWENINTDGNIRDIQEIILERLKVNA---KELNND 66
             GVGKTT+ + +H+   + S RFDI+ W  ++    +  +QE I E+L +     K  N  
Sbjct:    71 GVGKTTLFKKIHNKFAKMSSRFDIVIWIVVSKGAKLSKLQEDIAEKLHLCDDLWKNKNES 130

Query:    67 LRADIISKELNDRSYVLFLDGVSSEINFKEIGMH--DDHGRGKVVFACRSREFCWQADGV 124
              +A  I + L  + +VL LD +  +++ + IG+    +  + KV F  R ++ C +    
Sbjct:   131 DKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGVPYPSEVNKCKVAFTTRDQKVCGEMGDH 190

Query:   125 IHVQQLC--QREAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMPYMLKLIGKELANQ 181
               +Q  C    +A +LF   VG + L+  P I  +A  + ++C G+P  L +IG+ +A++
Sbjct:   191 KPMQVKCLEPEDAWELFKNKVGDNTLRSDPVIVELAREVAQKCRGLPLALSVIGETMASK 250

Query:   182 SEVAIWRATADXXXXXXXXXXXXXXXVDRFFTLVYKNLSLEQ-QHCLLGWAIFSTGLELS 240
             + V  W    D               +       Y +L  E  + C L  A+F    E+ 
Sbjct:   251 TMVQEWEHAIDVLTRSAAEFSNMGNKILPILKYSYDSLGDEHIKSCFLYCALFPEDDEIY 310

Query:   241 QDYIIDGWAAQKFLASFNKIGDAHTKRLSLFG 272
              + +ID W  + F+     I  A  K   + G
Sbjct:   311 NEKLIDYWICEGFIGEDQVIKRARNKGYEMLG 342

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
 Identities = 72/272 (26%), Positives = 122/272 (44%)

Query:    11 GVGKTTIMENLHHSIGE-SRRFDIIFWENINTDGNIRDIQEIILERLKVNA---KELNND 66
             GVGKTT+ + +H+   E    FDI+ W  ++    I  +QE I E+L +     K  N  
Sbjct:   182 GVGKTTLFKKIHNKFAEIGGTFDIVIWIVVSKGVMISKLQEDIAEKLHLCDDLWKNKNES 241

Query:    67 LRADIISKELNDRSYVLFLDGVSSEINFKEIGMH--DDHGRGKVVFACRSREFCWQADGV 124
              +A  I + L  + +VL LD +  +++ + IG+    +  + KV F  RSRE C +    
Sbjct:   242 DKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRSREVCGEMGDH 301

Query:   125 IHVQQLC--QREAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMPYMLKLIGKELANQ 181
               +Q  C    +A +LF   VG + L   P I  +A  + ++C G+P  L +IG+ ++++
Sbjct:   302 KPMQVNCLEPEDAWELFKNKVGDNTLSSDPVIVELAREVAQKCRGLPLALNVIGETMSSK 361

Query:   182 SEVAIWRATADXXXXXXXXXXXXXXXVDRFFTLVYKNLSLEQ-QHCLLGWAIFSTGLELS 240
             + V  W                    +       Y +L  E  + C L  A+F    E+ 
Sbjct:   362 TMVQEWEHAIHVFNTSAAEFSDMQNKILPILKYSYDSLGDEHIKSCFLYCALFPEDGEIY 421

Query:   241 QDYIIDGWAAQKFLASFNKIGDAHTKRLSLFG 272
              + +ID W  + F+     I  A  K  ++ G
Sbjct:   422 NEKLIDYWICEGFIGEDQVIKRARNKGYAMLG 453

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170892 AT5G43730 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 4.8e-29, Sum P(2) = 4.8e-29
 Identities = 78/278 (28%), Positives = 139/278 (50%)

Query:     1 MKKICIWGPLGVGKTTIMENLHHSIGE-SRRFDIIFWENINTDGNIRDIQEIILERLKVN 59
             ++ + ++G  G+GKTT++E+L++   E    FD++ W  ++ D  +  IQ+ IL RL+ +
Sbjct:   172 IRTLGLYGMGGIGKTTLLESLNNKFVELESEFDVVIWVVVSKDFQLEGIQDQILGRLRPD 231

Query:    60 AKELNNDL---RADIISKELNDRSYVLFLDGVSSEINFKEIGMHD---DHGRGKVVFACR 113
              KE   +    +A +I+  L  + +VL LD + SE++  +IG+     ++G  K+VF  R
Sbjct:   232 -KEWERETESKKASLINNNLKRKKFVLLLDDLWSEVDLIKIGVPPPSRENG-SKIVFTTR 289

Query:   114 SREFC--WQADGVIHVQQLCQREAKKLFWEVVG-VHLKKYPDIELVADSIVKECGGMPYM 170
             S+E C   +AD  I V  L   EA +LF   VG + L+ + DI  +A  +  +C G+P  
Sbjct:   290 SKEVCKHMKADKQIKVDCLSPDEAWELFRLTVGDIILRSHQDIPALARIVAAKCHGLPLA 349

Query:   171 LKLIGKELANQSEVAIWRATADXXXXXXXXXXXXXXXVDRFFTLVYKNLSL-EQQHCLLG 229
             L +IGK +  +  V  WR   +               +       Y +L   E + C L 
Sbjct:   350 LNVIGKAMVCKETVQEWRHAINVLNSPGHKFPGMEERILPILKFSYDSLKNGEIKLCFLY 409

Query:   230 WAIFSTGLELSQDYIIDGWAAQKFLASFNKIGDAHTKR 267
              ++F    E+ +D +I+ W  + ++   N+  D  T +
Sbjct:   410 CSLFPEDFEIEKDKLIEYWICEGYINP-NRYEDGGTNQ 446

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 5.6e-29, Sum P(2) = 5.6e-29
 Identities = 70/259 (27%), Positives = 124/259 (47%)

Query:     6 IWGPLGVGKTTIMENLHHSIGE-SRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELN 64
             ++G  GVGKTT++  +++   +   RFD++ W  ++    +R IQ  I E++ +   E +
Sbjct:   181 LYGMGGVGKTTLLTKINNKFSKIDDRFDVVIWVVVSRSSTVRKIQRDIAEKVGLGGMEWS 240

Query:    65 --NDLRADI-ISKELNDRSYVLFLDGVSSEINFKEIGM-HDDHGRG-KVVFACRSREFCW 119
               ND +  + I   L  R +VL LD +  ++N K +G+ +     G KV F  RSR+ C 
Sbjct:   241 EKNDNQIAVDIHNVLRRRKFVLLLDDIWEKVNLKAVGVPYPSKDNGCKVAFTTRSRDVCG 300

Query:   120 Q--ADGVIHVQQLCQREAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMPYMLKLIGK 176
             +   D  + V  L   E+  LF   VG + L  +PDI  +A  + ++C G+P  L +IG+
Sbjct:   301 RMGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGE 360

Query:   177 ELANQSEVAIWRATADXXXXXXXXXXXXXXXVDRFFTLVYKNLSLE-QQHCLLGWAIFST 235
              +A +  V  W    D               +       Y NL+ E  + C L  ++F  
Sbjct:   361 AMACKRTVHEWCHAIDVLTSSAIDFSGMEDEILHVLKYSYDNLNGELMKSCFLYCSLFPE 420

Query:   236 GLELSQDYIIDGWAAQKFL 254
                + ++ ++D W ++ F+
Sbjct:   421 DYLIDKEGLVDYWISEGFI 439

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 8.2e-29, Sum P(2) = 8.2e-29
 Identities = 72/274 (26%), Positives = 123/274 (44%)

Query:    11 GVGKTTIMENLHHSIGESR-RFDIIFWENINTDGNIRDIQEIILERLKVNA---KELNND 66
             GVGKTT+ + +H+   E+   FDI+ W  ++    +  +QE I E+L +     K  N  
Sbjct:   183 GVGKTTLFKKIHNKFAETGGTFDIVIWIVVSQGAKLSKLQEDIAEKLHLCDDLWKNKNES 242

Query:    67 LRADIISKELNDRSYVLFLDGVSSEINFKEIGMH--DDHGRGKVVFACRSREFCWQADGV 124
              +A  I + L  + +VL LD +  +++ + IG+    +  + KV F  R ++ C Q    
Sbjct:   243 DKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRDQKVCGQMGDH 302

Query:   125 IHVQQLC--QREAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMPYMLKLIGKELANQ 181
               +Q  C    +A +LF   VG + L+  P I  +A  + ++C G+P  L  IG+ +A++
Sbjct:   303 KPMQVKCLEPEDAWELFKNKVGDNTLRSDPVIVGLAREVAQKCRGLPLALSCIGETMASK 362

Query:   182 SEVAIWRATADXXXXXXXXXXXXXXXVDRFFTLVYKNLSLEQQH---CLLGWAIFSTGLE 238
             + V  W    D               +     L Y   SLE +H   C L  A+F    +
Sbjct:   363 TMVQEWEHAIDVLTRSAAEFSDMQNKI--LPILKYSYDSLEDEHIKSCFLYCALFPEDDK 420

Query:   239 LSQDYIIDGWAAQKFLASFNKIGDAHTKRLSLFG 272
             +    +I+ W  + F+     I  A  K   + G
Sbjct:   421 IDTKTLINKWICEGFIGEDQVIKRARNKGYEMLG 454

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2171579 AT5G47250 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
 Identities = 75/257 (29%), Positives = 125/257 (48%)

Query:     6 IWGPLGVGKTTIMENLHHSIGE-SRRFDIIFWENINTDGNIRDIQEIILERLKV---NAK 61
             I+G  GVGKTT++  +++   E S  +D++ W   + D ++  IQ+ I ERL +   N  
Sbjct:   181 IFGMGGVGKTTLLTLINNKFVEVSDDYDVVIWVESSKDADVGKIQDAIGERLHICDNNWS 240

Query:    62 ELNNDLRADIISKELNDRS--YVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFC- 118
               +   +A  IS+ L D    +VL LD +  +++   IG+     + KVVF  RS++ C 
Sbjct:   241 TYSRGKKASEISRVLRDMKPRFVLLLDDLWEDVSLTAIGIPVLGKKYKVVFTTRSKDVCS 300

Query:   119 -WQADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKE 177
               +A+  I VQ L + +A  LF   + VH     +I  +A  IV +C G+P  L++I K 
Sbjct:   301 VMRANEDIEVQCLSENDAWDLF--DMKVHCDGLNEISDIAKKIVAKCCGLPLALEVIRKT 358

Query:   178 LANQSEVAIWRATADXXXXXXXXXXXXXXXVDRFFTLVYKNLSLEQQHCLLGWAIFSTGL 237
             +A++S V  WR   D               + +   L Y  L  +   C L  A+F    
Sbjct:   359 MASKSTVIQWRRALDTLESYRSEMKGTEKGIFQVLKLSYDYLKTKNAKCFLYCALFPKAY 418

Query:   238 ELSQDYIIDGWAAQKFL 254
              + QD +++ W  + F+
Sbjct:   419 YIKQDELVEYWIGEGFI 435

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
 Identities = 76/277 (27%), Positives = 138/277 (49%)

Query:     6 IWGPLGVGKTTIMENLHHSIGESRR-FDIIFWENINTDGNIRDIQEIILERLKVNA--KE 62
             ++G  GVGKTT++ ++++   E    FD++ W  ++ D     IQE IL RL ++   K+
Sbjct:   179 LYGMGGVGKTTLLASINNKFLEGMNGFDLVIWVVVSKDLQNEGIQEQILGRLGLHRGWKQ 238

Query:    63 LNNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGMHD---DHGRGKVVFACRSREFC- 118
             +    +A  I   LN + +VL LD + SE++ ++IG+     ++G  K+VF  RS++ C 
Sbjct:   239 VTEKEKASYICNILNVKKFVLLLDDLWSEVDLEKIGVPPLTRENG-SKIVFTTRSKDVCR 297

Query:   119 -WQADGVIHVQQLCQREAKKLFWEVVG-VHLKKYPDIELVADSIVKECGGMPYMLKLIGK 176
               + DG + V  L   EA +LF + VG + L+ + DI  +A  + ++C G+P  L +IGK
Sbjct:   298 DMEVDGEMKVDCLPPDEAWELFQKKVGPIPLQSHEDIPTLARKVAEKCCGLPLALSVIGK 357

Query:   177 ELANQSEVAIWRATADXXXXXXXXXXXXXXXVDRFFTLVYKNLSLEQ-QHCLLGWAIFST 235
              +A++  V  W+                   +       Y +L  E+ + C L  ++F  
Sbjct:   358 AMASRETVQEWQHVIHVLNSSSHEFPSMEEKILPVLKFSYDDLKDEKVKLCFLYCSLFPE 417

Query:   236 GLELSQDYIIDGWAAQKFLASFNKIGDAHTKRLSLFG 272
               E+ ++ +I+ W  + F+        A+ K   + G
Sbjct:   418 DYEVRKEELIEYWMCEGFIDGNEDEDGANNKGHDIIG 454

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
 Identities = 73/261 (27%), Positives = 128/261 (49%)

Query:     6 IWGPLGVGKTTIMENLHHSIGESRR-FDIIFWENINTDGNIRDIQEIILERLKVNAKELN 64
             ++G  GVGKTT++  +H+++ +++   DI+ W  +++D  I  IQE I E+L    KE N
Sbjct:   178 LYGMGGVGKTTLLTQIHNTLHDTKNGVDIVIWVVVSSDLQIHKIQEDIGEKLGFIGKEWN 237

Query:    65 NDLRA----DIISKELNDRSYVLFLDGVSSEINFKEIGMHDD--HGRGKVVFACRSREFC 118
                 +    DI++  L+ + +VL LD +  +++  +IG+       + KVVF  RS + C
Sbjct:   238 KKQESQKAVDILNC-LSKKRFVLLLDDIWKKVDLTKIGIPSQTRENKCKVVFTTRSLDVC 296

Query:   119 WQADGV---IHVQQLCQREAKKLFWEVVG-VHLKKYPDIELVADSIVKECGGMPYMLKLI 174
              +  GV   + VQ L   +A +LF E VG + L  +PDI  +A  +  +C G+P  L +I
Sbjct:   297 ARM-GVHDPMEVQCLSTNDAWELFQEKVGQISLGSHPDILELAKKVAGKCRGLPLALNVI 355

Query:   175 GKELANQSEVAIWRATADXXXXXXXXXXXXXXXVDRFFTLVYKNLSLEQ-QHCLLGWAIF 233
             G+ +A +  V  W    D               +       Y NL+ +  + C    A++
Sbjct:   356 GETMAGKRAVQEWHHAVDVLTSYAAEFSGMDDHILLILKYSYDNLNDKHVRSCFQYCALY 415

Query:   234 STGLELSQDYIIDGWAAQKFL 254
                  + +  +ID W  + F+
Sbjct:   416 PEDYSIKKYRLIDYWICEGFI 436

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
 Identities = 62/271 (22%), Positives = 124/271 (45%)

Query:     2 KKICIWGPLGVGKTTIMENLHHSI---GESRRFDIIFWENINTDGNIRDIQEIILERLKV 58
             +KI +WG  GVGKTT++  L++ +   G ++ F ++ +  ++ + + R++Q+ I ERL +
Sbjct:   165 QKIGVWGMGGVGKTTLVRTLNNKLREEGATQPFGLVIFVIVSKEFDPREVQKQIAERLDI 224

Query:    59 NAK--ELNNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGM-HDDHGRG-KVVFACRS 114
             + +  E    L   I    + +R ++L LD V   I+   +G+   +  +G KV+   R 
Sbjct:   225 DTQMEESEEKLARRIYVGLMKERKFLLILDDVWKPIDLDLLGIPRTEENKGSKVILTSRF 284

Query:   115 REFC--WQADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLK 172
              E C   + D  + V  L + +A +LF +  G  + +   +  +A ++ +ECGG+P  + 
Sbjct:   285 LEVCRSMKTDLDVRVDCLLEEDAWELFCKNAG-DVVRSDHVRKIAKAVSQECGGLPLAII 343

Query:   173 LIGKELANQSEVAIWRATADXXXXXXXXXXXXXXXVDRFFTLVYKNLSLEQQHCLLGWAI 232
              +G  +  +  V +W                    + +   L Y  L  + + C L  A+
Sbjct:   344 TVGTAMRGKKNVKLWNHVLSKLSKSVPWIKSIEEKIFQPLKLSYDFLEDKAKFCFLLCAL 403

Query:   233 FSTGLELSQDYIIDGWAAQKFLASFNKIGDA 263
             F     +    ++  W A+ F+       D+
Sbjct:   404 FPEDYSIEVTEVVRYWMAEGFMEELGSQEDS 434

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 5.2e-26, Sum P(2) = 5.2e-26
 Identities = 71/258 (27%), Positives = 122/258 (47%)

Query:     6 IWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNN 65
             I+G  GVGKTT++  L + +     F ++ +  +  +  +  IQ+ I +RL +  +    
Sbjct:   174 IYGRGGVGKTTLLTKLRNKLLVDA-FGLVIFVVVGFE-EVESIQDEIGKRLGLQWRRETK 231

Query:    66 DLRADIISKELNDRSYVLFLDGVSSEINFKEIGM-HDDHGRG-KVVFACRSREFC----W 119
             + +A  I   L ++ +VL LDG+  E++ +EIG+       G K+VF  +S E C    W
Sbjct:   232 ERKAAEILAVLKEKRFVLLLDGIQRELDLEEIGVPFPSRDNGCKIVFTTQSLEACDESKW 291

Query:   120 QADGVIHVQQLCQREAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMPYMLKLIGKEL 178
               D  + +  L   EA  LF E VG + L+ + DI  +A  +   C G+P  L LIG+ +
Sbjct:   292 -VDAKVEITCLSPEEAWDLFQETVGENTLRSHQDIPKLARVVASTCRGLPLALNLIGEAM 350

Query:   179 ANQSEVAIWRATADXXXXXXXXXXXXXXXVDRFFTLVYKNLSLEQ-QHCLLGWAIFSTGL 237
             + +  V  WR T                        +Y N+S E  + C L  A+F   L
Sbjct:   351 SGKRTVREWRYTIHVLASSTAEFPDMEDGTLPILKSIYDNMSDEIIRLCFLYCALFPENL 410

Query:   238 ELSQDYIIDGWAAQKFLA 255
             ++ ++ +++ W  +  LA
Sbjct:   411 DIGKEDLVNYWICEGILA 428

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027859001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (967 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	424
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	4e-33
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
pfam13401	124	pfam13401, AAA_22, AAA domain	8e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	8e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score =  125 bits (316), Expect = 4e-33
 Identities = 69/262 (26%), Positives = 120/262 (45%), Gaps = 10/262 (3%)

Query: 6   IWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNN 65
           I G  GVGKTT+ + +++       FD + W  ++       +Q+ IL+ L ++  +   
Sbjct: 24  IVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDILQELGLDDSDWVE 83

Query: 66  D---LRADIISKELNDRSYVLFLDGVSSEINFKEIGM--HDDHGRGKVVFACRSREFCWQ 120
                 A  I + L  + ++L LD V  + ++ +IG+   D     +V+   RS     +
Sbjct: 84  KNESELAVKIKEALLRKRFLLVLDDVWEKNDWDKIGVPFPDGENGSRVIVTTRSESVAGR 143

Query: 121 ADG---VIHVQQLCQREAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMPYMLKLIGK 176
             G      V+ L   E+ +LF   V    L   P++E VA  IV++C G+P  LK++G 
Sbjct: 144 MGGTSKPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGG 203

Query: 177 ELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQQHCLLGWAIFSTG 236
            LA +S V  W    ++L       +  L EV    +L Y NL +  + C L  A+F   
Sbjct: 204 LLAFKSTVQEWEHVLEQLN-NELAGRDGLNEVLSILSLSYDNLPMHLKRCFLYLALFPED 262

Query: 237 LELSQDYIIDGWAAQKFLASFN 258
             + ++ +I  W A+ F+   +
Sbjct: 263 YNIRKEQLIKLWIAEGFVIPSD 284

Length = 285

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRS 341
           +L L   RL  +P   F  + +L++LDL   N+  + P + S L +L +L L  
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57

Length = 60

>gnl|CDD|222104 pfam13401, AAA_22, AAA domain

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 4  ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKEL 63
            + G  G GKTT++  L   +   R   +++ E   + G  +D+   IL  L +     
Sbjct: 7  GVLTGESGSGKTTLLRRLARQLPNRR---VVYVE-APSLGTPKDLLRKILRALGLPLSGG 62

Query: 64 NNDLRADIISKELND-RSYVLFLD 86
                + I   L      +L +D
Sbjct: 63 TTAELLEAILDALKRRGRPLLIID 86

Length = 124

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 41.2 bits (96), Expect = 8e-04
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 17/124 (13%)

Query: 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP 325
           K L L   P+  +P+     +I TLIL+   L+ LP +      +++ L  +   +  +P
Sbjct: 186 KILGLTTIPAC-IPE-----QITTLILDNNELKSLPENL---QGNIKTLYANSNQLTSIP 236

Query: 326 PSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYL 385
            ++   I    L +     L  +LP+       L+ LD+ H K+ CLP  + +  EL+YL
Sbjct: 237 ATLPDTIQEMELSINRITELPERLPS------ALQSLDLFHNKISCLPENLPE--ELRYL 288

Query: 386 RVSR 389
            V  
Sbjct: 289 SVYD 292

Length = 754

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 322 GCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLI 380
           G +P  IS+L +L ++ L S  S+   +P  +G +  LE+LD+S+      +P  +GQL 
Sbjct: 432 GFIPNDISKLRHLQSINL-SGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 381 ELKYL 385
            L+ L
Sbjct: 491 SLRIL 495

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	424
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	100.0
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.53
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.44
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.4
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.38
PF05729	166	NACHT: NACHT domain	99.37
PRK04841	903	transcriptional regulator MalT; Provisional	99.33
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.33
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.26
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.24
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.23
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	99.17
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.16
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.12
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.11
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.07
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	99.02
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.02
PF13173	128	AAA_14: AAA domain	98.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.96
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	98.95
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.94
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.92
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	98.92
PRK06893	229	DNA replication initiation factor; Validated	98.9
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.88
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.85
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.82
KOG2028	554	consensus ATPase related to the helicase subunit o	98.81
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.79
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.76
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.76
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.74
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.73
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.73
PRK13342	413	recombination factor protein RarA; Reviewed	98.72
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.72
COG3903	414	Predicted ATPase [General function prediction only	98.68
PRK08084	235	DNA replication initiation factor; Provisional	98.65
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.64
PF14516	331	AAA_35: AAA-like domain	98.64
PLN03150	623	hypothetical protein; Provisional	98.64
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.63
PRK08727	233	hypothetical protein; Validated	98.63
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	98.62
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.6
cd01128	249	rho_factor Transcription termination factor rho is	98.6
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.6
PRK09087	226	hypothetical protein; Validated	98.6
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.59
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.58
PRK05642	234	DNA replication initiation factor; Validated	98.57
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.56
PRK04195	482	replication factor C large subunit; Provisional	98.55
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.54
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.54
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.53
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.51
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.51
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	98.45
PLN03150	623	hypothetical protein; Provisional	98.45
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.44
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.43
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.43
PRK12402	337	replication factor C small subunit 2; Reviewed	98.42
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.41
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.41
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.4
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	98.4
PRK09376	416	rho transcription termination factor Rho; Provisio	98.39
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.39
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.39
PLN03025	319	replication factor C subunit; Provisional	98.38
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.38
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.37
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.35
PRK12422	445	chromosomal replication initiation protein; Provis	98.34
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.32
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.32
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.32
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.31
PRK13341	725	recombination factor protein RarA/unknown domain f	98.3
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	98.3
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.3
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.29
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.29
PRK06620	214	hypothetical protein; Validated	98.29
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	98.28
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.25
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.23
TIGR00767	415	rho transcription termination factor Rho. Members	98.23
PRK05564	313	DNA polymerase III subunit delta'; Validated	98.22
COG0593	408	DnaA ATPase involved in DNA replication initiation	98.22
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.21
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.19
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	98.18
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	98.17
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	98.17
PRK07940	394	DNA polymerase III subunit delta'; Validated	98.16
COG3899	849	Predicted ATPase [General function prediction only	98.13
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.13
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.13
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	98.12
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	98.12
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.11
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.09
PRK08118	167	topology modulation protein; Reviewed	98.07
PRK09112	351	DNA polymerase III subunit delta'; Validated	98.07
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	98.06
PTZ00202	550	tuzin; Provisional	98.06
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	98.05
smart00382	148	AAA ATPases associated with a variety of cellular	98.04
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.03
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	98.02
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	98.02
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	98.02
CHL00181	287	cbbX CbbX; Provisional	98.02
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.01
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	98.0
PF00004	132	AAA: ATPase family associated with various cellula	98.0
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.0
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.99
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	97.97
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	97.96
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.95
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	97.95
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.95
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.94
PRK07261	171	topology modulation protein; Provisional	97.93
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	97.92
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	97.92
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	97.92
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	97.91
PRK05707	328	DNA polymerase III subunit delta'; Validated	97.9
PRK07471	365	DNA polymerase III subunit delta'; Validated	97.9
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	97.9
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.89
CHL00195	489	ycf46 Ycf46; Provisional	97.88
PRK08116	268	hypothetical protein; Validated	97.88
PHA02544	316	44 clamp loader, small subunit; Provisional	97.88
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	97.88
CHL00176	638	ftsH cell division protein; Validated	97.87
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.86
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	97.84
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.84
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	97.82
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	97.82
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	97.82
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.8
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	97.79
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.77
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	97.76
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.76
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.72
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	97.72
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	97.72
PRK12608	380	transcription termination factor Rho; Provisional	97.72
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	97.71
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.71
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.7
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.7
PF10443	431	RNA12: RNA12 protein; InterPro: IPR018850 Mitochon	97.69
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.69
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	97.68
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.68
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.68
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.67
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.65
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.65
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	97.64
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.62
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.62
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.61
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	97.61
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.6
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	97.59
PRK09354	349	recA recombinase A; Provisional	97.58
PRK10536	262	hypothetical protein; Provisional	97.57
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.56
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.55
PRK12377	248	putative replication protein; Provisional	97.55
PRK08181	269	transposase; Validated	97.55
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.55
PRK15386	426	type III secretion protein GogB; Provisional	97.53
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	97.52
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.52
PRK15386	426	type III secretion protein GogB; Provisional	97.51
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.5
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.47
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.47
KOG0736	953	consensus Peroxisome assembly factor 2 containing	97.47
PRK04132	846	replication factor C small subunit; Provisional	97.47
PRK06526	254	transposase; Provisional	97.47
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	97.46
PRK06921	266	hypothetical protein; Provisional	97.45
KOG2035	351	consensus Replication factor C, subunit RFC3 [Cell	97.45
PRK08769	319	DNA polymerase III subunit delta'; Validated	97.44
PRK06871	325	DNA polymerase III subunit delta'; Validated	97.42
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	97.41
CHL00095	821	clpC Clp protease ATP binding subunit	97.41
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	97.4
KOG1514	767	consensus Origin recognition complex, subunit 1, a	97.39
PRK08058	329	DNA polymerase III subunit delta'; Validated	97.38
PRK04296	190	thymidine kinase; Provisional	97.38
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	97.38
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.37
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.36
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.36
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	97.36
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	97.36
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.35
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.35
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	97.34
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.31
PRK07399	314	DNA polymerase III subunit delta'; Validated	97.3
PRK05541	176	adenylylsulfate kinase; Provisional	97.3
PRK10865	857	protein disaggregation chaperone; Provisional	97.26
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	97.26
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	97.22
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.21
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.21
PRK06217	183	hypothetical protein; Validated	97.2
PF00154	322	RecA: recA bacterial DNA recombination protein; In	97.19
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.19
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	97.19
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.17
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	97.16
PRK04301	317	radA DNA repair and recombination protein RadA; Va	97.16
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.15
PTZ00035	337	Rad51 protein; Provisional	97.15
PRK06835	329	DNA replication protein DnaC; Validated	97.13
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	97.11
PRK10865	857	protein disaggregation chaperone; Provisional	97.1
PRK07993	334	DNA polymerase III subunit delta'; Validated	97.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.09
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.09
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.08
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	97.08
KOG1969	877	consensus DNA replication checkpoint protein CHL12	97.08
PRK06090	319	DNA polymerase III subunit delta'; Validated	97.07
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	97.06
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.05
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.05
PRK08233	182	hypothetical protein; Provisional	97.03
PRK07952	244	DNA replication protein DnaC; Validated	97.02
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.02
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.01
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.01
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	97.01
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	97.0
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.0
PRK09519	790	recA DNA recombination protein RecA; Reviewed	97.0
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.99
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.99
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.99
COG1484	254	DnaC DNA replication protein [DNA replication, rec	96.98
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	96.98
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	96.98
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	96.97
PRK09183	259	transposase/IS protein; Provisional	96.97
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	96.96
TIGR02236	310	recomb_radA DNA repair and recombination protein R	96.95
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	96.93
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.93
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	96.92
PRK08699	325	DNA polymerase III subunit delta'; Validated	96.92
cd01135	276	V_A-ATPase_B V/A-type ATP synthase (non-catalytic)	96.91
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	96.91
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	96.91
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	96.89
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	96.89
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	96.88
PRK08939	306	primosomal protein DnaI; Reviewed	96.88
PRK06964	342	DNA polymerase III subunit delta'; Validated	96.87
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.87
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	96.86
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	96.85
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.85
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.85
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.84
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.83
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.83
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.83
PRK13695	174	putative NTPase; Provisional	96.82
PRK06067	234	flagellar accessory protein FlaH; Validated	96.8
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	96.8
PRK12597	461	F0F1 ATP synthase subunit beta; Provisional	96.8
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	96.79
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.79
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.78
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	96.77
PRK10867	433	signal recognition particle protein; Provisional	96.76
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.75
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	96.75
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	96.74
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.74
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	96.74
TIGR00959	428	ffh signal recognition particle protein. This mode	96.72
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	96.72
PTZ00301	210	uridine kinase; Provisional	96.72
PRK04328	249	hypothetical protein; Provisional	96.72
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	96.7
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.68
PRK09280	463	F0F1 ATP synthase subunit beta; Validated	96.68
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	96.68
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.68
PRK00889	175	adenylylsulfate kinase; Provisional	96.67
PF10236	309	DAP3: Mitochondrial ribosomal death-associated pro	96.66
PF00006	215	ATP-synt_ab: ATP synthase alpha/beta family, nucle	96.66
PTZ00088	229	adenylate kinase 1; Provisional	96.65
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	96.64
CHL00206	2281	ycf2 Ycf2; Provisional	96.63
COG5635	824	Predicted NTPase (NACHT family) [Signal transducti	96.63
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	96.63
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.62
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.62
PRK06762	166	hypothetical protein; Provisional	96.62
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.62
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	96.61
PRK04040	188	adenylate kinase; Provisional	96.61
KOG2228	408	consensus Origin recognition complex, subunit 4 [R	96.6
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	96.6
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	96.59
PRK07132	299	DNA polymerase III subunit delta'; Validated	96.59
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	96.58
TIGR03305	449	alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit	96.58
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.57
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.56
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.55
TIGR01039	461	atpD ATP synthase, F1 beta subunit. The sequences	96.54
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.53
PRK05480	209	uridine/cytidine kinase; Provisional	96.53
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.52
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.52
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	96.51
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.51
PRK06547	172	hypothetical protein; Provisional	96.51
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	96.51
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	96.49
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	96.49
PRK08149	428	ATP synthase SpaL; Validated	96.49
PRK06696	223	uridine kinase; Validated	96.49
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	96.49
PRK05973	237	replicative DNA helicase; Provisional	96.48
PRK11823	446	DNA repair protein RadA; Provisional	96.48
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.46
PF13245	76	AAA_19: Part of AAA domain	96.46
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.45
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.44
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	96.44
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	96.43
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.43
PRK14974	336	cell division protein FtsY; Provisional	96.43
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.41
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.41
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	96.41
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	96.41
PRK05922	434	type III secretion system ATPase; Validated	96.4
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	96.4
COG2884	223	FtsE Predicted ATPase involved in cell division [C	96.4
PRK14532	188	adenylate kinase; Provisional	96.39
PRK03839	180	putative kinase; Provisional	96.39
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.39
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.38
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	96.38
PRK06936	439	type III secretion system ATPase; Provisional	96.38
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.37
PRK00279	215	adk adenylate kinase; Reviewed	96.37
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.37
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	96.36
PRK14531	183	adenylate kinase; Provisional	96.36
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	96.36
PF07726	131	AAA_3: ATPase family associated with various cellu	96.36
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.35
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	96.35
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	96.34
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.32
PRK13949	169	shikimate kinase; Provisional	96.32
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.3
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	96.3
TIGR01041	458	ATP_syn_B_arch ATP synthase archaeal, B subunit. A	96.29
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	96.29
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	96.29
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	96.28
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.28
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.28
PRK13947	171	shikimate kinase; Provisional	96.28
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.28
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	96.28
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	96.27
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	96.26
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.26
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	96.26
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	96.24
PRK07667	193	uridine kinase; Provisional	96.24
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	96.23
CHL00060	494	atpB ATP synthase CF1 beta subunit	96.23
PF02374	305	ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_	96.23
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.22
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.2
TIGR01040	466	V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. Th	96.19
cd03246	173	ABCC_Protease_Secretion This family represents the	96.19
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	96.19
PRK10416	318	signal recognition particle-docking protein FtsY;	96.18
PRK00131	175	aroK shikimate kinase; Reviewed	96.18
PHA00729	226	NTP-binding motif containing protein	96.17
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	96.17
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.17
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	96.17
cd01132	274	F1_ATPase_alpha F1 ATP synthase alpha, central dom	96.16
COG3910	233	Predicted ATPase [General function prediction only	96.16
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	96.15
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	96.15
KOG2859	293	consensus DNA repair protein, member of the recA/R	96.14
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.13
cd03116	159	MobB Molybdenum is an essential trace element in t	96.12
PRK09099	441	type III secretion system ATPase; Provisional	96.12
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	96.12
PRK15453	290	phosphoribulokinase; Provisional	96.12
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	96.1
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.1
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	96.09
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	96.09
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	96.09
PRK00625	173	shikimate kinase; Provisional	96.08
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	96.06
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	96.06
cd02040	270	NifH NifH gene encodes component II (iron protein)	96.06
KOG0736	953	consensus Peroxisome assembly factor 2 containing	96.06
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	96.05
KOG3928	461	consensus Mitochondrial ribosome small subunit com	96.05
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.04
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	96.04
PRK00300	205	gmk guanylate kinase; Provisional	96.03
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	96.03
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	96.02
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.01
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	96.01
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	96.01
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	96.01
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.01
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	96.0
PRK13768	253	GTPase; Provisional	96.0
PRK00409	782	recombination and DNA strand exchange inhibitor pr	96.0
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.0
COG1157	441	FliI Flagellar biosynthesis/type III secretory pat	95.99
PRK14737	186	gmk guanylate kinase; Provisional	95.99
PRK08533	230	flagellar accessory protein FlaH; Reviewed	95.98
PRK12678	672	transcription termination factor Rho; Provisional	95.98
PF02456	369	Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR	95.96
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	95.96
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	95.92
PRK05439	311	pantothenate kinase; Provisional	95.92
PRK01184	184	hypothetical protein; Provisional	95.91
PRK14529	223	adenylate kinase; Provisional	95.91
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.91
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	95.91
PRK14528	186	adenylate kinase; Provisional	95.9
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	95.9
cd01134	369	V_A-ATPase_A V/A-type ATP synthase catalytic subun	95.9
PRK14530	215	adenylate kinase; Provisional	95.89
PTZ00494	664	tuzin-like protein; Provisional	95.89
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	95.89
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	95.88
PRK13975	196	thymidylate kinase; Provisional	95.88
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	95.87
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	95.86
PRK13230	279	nitrogenase reductase-like protein; Reviewed	95.86
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	95.84
PTZ00185	574	ATPase alpha subunit; Provisional	95.84
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	95.84
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	95.83
COG0055	468	AtpD F0F1-type ATP synthase, beta subunit [Energy	95.83
COG0003	322	ArsA Predicted ATPase involved in chromosome parti	95.82
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	95.82
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	95.82
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	95.81
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	95.81
PLN02924	220	thymidylate kinase	95.8
PRK14527	191	adenylate kinase; Provisional	95.8
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	95.79
PRK12339	197	2-phosphoglycerate kinase; Provisional	95.79
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	95.78
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	95.77
PRK06761	282	hypothetical protein; Provisional	95.77
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	95.77
PRK04196	460	V-type ATP synthase subunit B; Provisional	95.76
PRK03846	198	adenylylsulfate kinase; Provisional	95.75
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	95.75
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	95.75
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	95.73
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	95.7
PLN02348	395	phosphoribulokinase	95.69

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-59  Score=478.81  Aligned_cols=410  Identities=29%  Similarity=0.475  Sum_probs=359.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc-cCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc---cccChhHHHHHHHHHhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG-ESRRFDIIFWENINTDGNIRDIQEIILERLKVNA---KELNNDLRADIISKELN   77 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~l~~~l~   77 (424)
                      ++++|+||||+||||||++++++.. ++.+||.++||.|++.++...+.++|+..++...   .....++.+..+.+.|+
T Consensus       180 ~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~  259 (889)
T KOG4658|consen  180 GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE  259 (889)
T ss_pred             CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc
Confidence            5899999999999999999999998 8999999999999999999999999999998755   33344788899999999


Q ss_pred             cCcEEEEEcCCCCcchhhhh--ccCCCCCCcEEEEEecchhhhc---ccCceEEecCCCHHHHHHHHHHHhccc-CCCCc
Q 037045           78 DRSYVLFLDGVSSEINFKEI--GMHDDHGRGKVVFACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVH-LKKYP  151 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~~~~~~--~~~~~~~~~~iiittr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~-~~~~~  151 (424)
                      .+|++||+||+|+..+|+.+  ++|....||||++|||++.+..   +....++++.|+++|||++|.+.++.. ....+
T Consensus       260 ~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~  339 (889)
T KOG4658|consen  260 GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHP  339 (889)
T ss_pred             cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccc
Confidence            99999999999999999999  5556678899999999999998   557889999999999999999999877 44556


Q ss_pred             cHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCcccccc-hhhhhHHHhhhhccCCcchHhHHhhh
Q 037045          152 DIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKE-LEEVDRFFTLVYKNLSLEQQHCLLGW  230 (424)
Q Consensus       152 ~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~i~~~l~~s~~~L~~~~k~~~~~l  230 (424)
                      ..++.|+++++.|+|+|+|+.++|+.++.+.+..+|+++.+.+......+.+. .+.+..++..||+.|+++.|.||+||
T Consensus       340 ~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLyc  419 (889)
T KOG4658|consen  340 DIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYC  419 (889)
T ss_pred             cHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhh
Confidence            68999999999999999999999999999999999999999998822444433 37999999999999998899999999


Q ss_pred             hhccCCCCCChHHHHhhhhhcchhhh-------------------------------------hhhccc-----------
Q 037045          231 AIFSTGLELSQDYIIDGWAAQKFLAS-------------------------------------FNKIGD-----------  262 (424)
Q Consensus       231 a~fp~~~~i~~~~Li~~w~~~~~~~~-------------------------------------~~d~~~-----------  262 (424)
                      |.||+|+.|+.+.|+.+|++|||+.+                                     |||+.+           
T Consensus       420 alFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~  499 (889)
T KOG4658|consen  420 ALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFG  499 (889)
T ss_pred             ccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhcccc
Confidence            99999999999999999999999966                                     277722           


Q ss_pred             -----------------------cceeEEEeeccCCCCCCCCcCcccccEEEccCCC--CCCCChHHhcccCCCcEEEcc
Q 037045          263 -----------------------AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKR--LEKLPTSFFDYMCHLQLLDLH  317 (424)
Q Consensus       263 -----------------------~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~--l~~~~~~~~~~~~~L~~L~l~  317 (424)
                                             ..+|++.+.+|.+..++.-..++.|++|-+..|.  +...+..+|..++.|++||++
T Consensus       500 ~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs  579 (889)
T KOG4658|consen  500 KQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLS  579 (889)
T ss_pred             ccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECC
Confidence                                   4678888899988888877888899999999986  778888889999999999999


Q ss_pred             CC-CCCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEecCCc-CcccchhhhcCCCCCEeeeccccCCCC
Q 037045          318 ET-NIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTK-VQCLPSEIGQLIELKYLRVSRVENVGN  395 (424)
Q Consensus       318 ~~-~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~l~l~~n~~~~~  395 (424)
                      +| .+..+|..++.|.+|++|++  ..+.+..+|..++++.+|.+|++.++. ...+|.....|.+|++|.+..-..   
T Consensus       580 ~~~~l~~LP~~I~~Li~LryL~L--~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~---  654 (889)
T KOG4658|consen  580 GNSSLSKLPSSIGELVHLRYLDL--SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL---  654 (889)
T ss_pred             CCCccCcCChHHhhhhhhhcccc--cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc---
Confidence            88 45999999999999999999  899999999999999999999999987 556665567799999999887531   


Q ss_pred             cccCCCCCCCCcChhhhhccccCceeec
Q 037045          396 HTHADAGSGEMISLNIISKLRLLEELII  423 (424)
Q Consensus       396 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l  423 (424)
                             ......+.++.+|.+|+.|.+
T Consensus       655 -------~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  655 -------SNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             -------ccchhhHHhhhcccchhhhee
Confidence                   224556667777777766654

>PLN03210 Resistant to P

Probab=100.00  E-value=1.2e-42  Score=372.32  Aligned_cols=380  Identities=21%  Similarity=0.320  Sum_probs=281.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEe---ccCC-----------C-HHHHHHHHHHHhcccccccCh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENI---NTDG-----------N-IRDIQEIILERLKVNAKELNN   65 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~~-----------~-~~~~~~~i~~~l~~~~~~~~~   65 (424)
                      +++|+|+||||+||||||+.+|++.  ..+|++.+|++.   ....           + ...+.++++.++...... ..
T Consensus       207 ~~vvgI~G~gGiGKTTLA~~l~~~l--~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~-~~  283 (1153)
T PLN03210        207 VRMVGIWGSSGIGKTTIARALFSRL--SRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI-KI  283 (1153)
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHH--hhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc-cc
Confidence            4799999999999999999999987  688988888752   1110           0 123344444444322211 11


Q ss_pred             hHHHHHHHHHhccCcEEEEEcCCCCcchhhhhcc-C-CCCCCcEEEEEecchhhhc--ccCceEEecCCCHHHHHHHHHH
Q 037045           66 DLRADIISKELNDRSYVLFLDGVSSEINFKEIGM-H-DDHGRGKVVFACRSREFCW--QADGVIHVQQLCQREAKKLFWE  141 (424)
Q Consensus        66 ~~~~~~l~~~l~~~~~LlvlD~~~~~~~~~~~~~-~-~~~~~~~iiittr~~~~~~--~~~~~~~l~~l~~~~~~~l~~~  141 (424)
                      . ....+++.++++++||||||+|+..+++.+.. . ....|++||||||++.+..  .....++++.++.++|+++|.+
T Consensus       284 ~-~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~  362 (1153)
T PLN03210        284 Y-HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCR  362 (1153)
T ss_pred             C-CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHH
Confidence            1 12456778899999999999999989988832 2 4568999999999999876  4578999999999999999999


Q ss_pred             HhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCcccccchhhhhHHHhhhhccCCc
Q 037045          142 VVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSL  221 (424)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~s~~~L~~  221 (424)
                      .+++...+...+.+.+++|++.|+|+|+||.++|+.++.+ +..+|++.++.+.. ...     ..+..+|+.||+.|++
T Consensus       363 ~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~-~~~-----~~I~~~L~~SYd~L~~  435 (1153)
T PLN03210        363 SAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRN-GLD-----GKIEKTLRVSYDGLNN  435 (1153)
T ss_pred             HhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHh-Ccc-----HHHHHHHHHhhhccCc
Confidence            9998755666788899999999999999999999999987 88999999999987 443     3899999999999987


Q ss_pred             c-hHhHHhhhhhccCCCCCChHHHHhhhhhcc---------------hhh------hhhhccc-----------------
Q 037045          222 E-QQHCLLGWAIFSTGLELSQDYIIDGWAAQK---------------FLA------SFNKIGD-----------------  262 (424)
Q Consensus       222 ~-~k~~~~~la~fp~~~~i~~~~Li~~w~~~~---------------~~~------~~~d~~~-----------------  262 (424)
                      + .|.||+++|+|+.+..++.   +..|.+.+               +++      .|||+.+                 
T Consensus       436 ~~~k~~Fl~ia~ff~~~~~~~---v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r  512 (1153)
T PLN03210        436 KKDKAIFRHIACLFNGEKVND---IKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGER  512 (1153)
T ss_pred             cchhhhhheehhhcCCCCHHH---HHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcc
Confidence            5 9999999999988765432   22222221               111      1344411                 


Q ss_pred             ---------------------------------------------c-------------------------------cee
Q 037045          263 ---------------------------------------------A-------------------------------HTK  266 (424)
Q Consensus       263 ---------------------------------------------~-------------------------------~l~  266 (424)
                                                                   .                               +++
T Consensus       513 ~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr  592 (1153)
T PLN03210        513 EFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLR  592 (1153)
T ss_pred             eeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccE
Confidence                                                         1                               244


Q ss_pred             EEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCC-CCcCChhhhcccccceeeecccccc
Q 037045          267 RLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETN-IGCLPPSISRLINLNALFLRSSCSL  345 (424)
Q Consensus       267 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~p~~~~~l~~L~~l~l~~~~~~  345 (424)
                      .|.+.++.++.+|....+.+|+.|++.+|.++.++.. +..+++|+.|+++++. +..+| .++.+++|++|++. .|..
T Consensus       593 ~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~-~c~~  669 (1153)
T PLN03210        593 LLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS-DCSS  669 (1153)
T ss_pred             EEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec-CCCC
Confidence            4444455555555555567788888888888777665 5667888888888774 46665 37778888888884 6666


Q ss_pred             cccCChhhhccCCCCEEEecCCc-CcccchhhhcCCCCCEeeeccccCCCCccc
Q 037045          346 LLQLPAEIGRLQKLEILDVSHTK-VQCLPSEIGQLIELKYLRVSRVENVGNHTH  398 (424)
Q Consensus       346 ~~~lp~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~  398 (424)
                      +..+|..++.+++|+.|++++|. +..+|..+ ++++|++|++++|...+.+|.
T Consensus       670 L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~  722 (1153)
T PLN03210        670 LVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD  722 (1153)
T ss_pred             ccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence            77888888888888888888875 77888655 678888888888876655543

syringae 6; Provisional

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=100.00  E-value=6.5e-43  Score=322.72  Aligned_cols=257  Identities=28%  Similarity=0.459  Sum_probs=210.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc----cccChhHHHHHHHHHh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA----KELNNDLRADIISKEL   76 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~l   76 (424)
                      .++|+|+|++|+||||||.+++++...+.+|+.++|+.++...+...+++.|+.+++...    ...+.++....+.+.+
T Consensus        19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L   98 (287)
T PF00931_consen   19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL   98 (287)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred             eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence            368999999999999999999999656899999999999998888999999999998884    4567778899999999


Q ss_pred             ccCcEEEEEcCCCCcchhhhh--ccCCCCCCcEEEEEecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcccC-CCC
Q 037045           77 NDRSYVLFLDGVSSEINFKEI--GMHDDHGRGKVVFACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHL-KKY  150 (424)
Q Consensus        77 ~~~~~LlvlD~~~~~~~~~~~--~~~~~~~~~~iiittr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~-~~~  150 (424)
                      +++++||||||+++...|+.+  .++....+++||||||+..+..   .....+++++|+++||++||.+.++... ...
T Consensus        99 ~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~  178 (287)
T PF00931_consen   99 KDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESP  178 (287)
T ss_dssp             CCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----
T ss_pred             ccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999887  2335567899999999998876   2267899999999999999999997653 334


Q ss_pred             ccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCccccc-chhhhhHHHhhhhccCCcchHhHHhh
Q 037045          151 PDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKK-ELEEVDRFFTLVYKNLSLEQQHCLLG  229 (424)
Q Consensus       151 ~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~i~~~l~~s~~~L~~~~k~~~~~  229 (424)
                      ...++.+++|++.|+|+|+||.++|++++.+.+..+|++.++.+.. ...+.. ....++.++..||+.|+++.|+||.+
T Consensus       179 ~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~-~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~  257 (287)
T PF00931_consen  179 EDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELEN-SLRESRDYDRSVFSALELSYDSLPDELRRCFLY  257 (287)
T ss_dssp             TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHH-CHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccceechhcCCccHHHHHhh
Confidence            5556789999999999999999999999776577899999998888 443332 34799999999999999999999999


Q ss_pred             hhhccCCCCCChHHHHhhhhhcchhhhhh
Q 037045          230 WAIFSTGLELSQDYIIDGWAAQKFLASFN  258 (424)
Q Consensus       230 la~fp~~~~i~~~~Li~~w~~~~~~~~~~  258 (424)
                      ||+||++..++.+.|+++|.++||+.+.|
T Consensus       258 L~~f~~~~~i~~~~li~lW~~e~~i~~~~  286 (287)
T PF00931_consen  258 LSIFPEGVPIPRERLIRLWVAEGFISSKH  286 (287)
T ss_dssp             GGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred             CcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence            99999999999999999999999998654

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=1.3e-16  Score=127.77  Aligned_cols=145  Identities=24%  Similarity=0.367  Sum_probs=113.2

Q ss_pred             cceeEEEeeccCCCCC-CCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecc
Q 037045          263 AHTKRLSLFGFPSSTL-PDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRS  341 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~  341 (424)
                      +++++|.+++|.++.+ |.++.+.+|+.|++++|+++++|.+ ++.++.|+.|++..|++..+|..|+.++.|+.|++  
T Consensus        33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~levldl--  109 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL--  109 (264)
T ss_pred             hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCchhhhhhc--
Confidence            6778888888888874 5668888888888888888888887 67788888888888888888888888888888888  


Q ss_pred             cccccc--cCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCc
Q 037045          342 SCSLLL--QLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLE  419 (424)
Q Consensus       342 ~~~~~~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  419 (424)
                      ..+.+.  .+|..+..+.-|+.|.++.|-+..+|+.++++++|+.|.+.+|.             ....+++++.|+.|+
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-------------ll~lpkeig~lt~lr  176 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-------------LLSLPKEIGDLTRLR  176 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-------------hhhCcHHHHHHHHHH
Confidence            455443  57777777777777778887777888888888888888888876             335667788888887


Q ss_pred             eeec
Q 037045          420 ELII  423 (424)
Q Consensus       420 ~L~l  423 (424)
                      .|.|
T Consensus       177 elhi  180 (264)
T KOG0617|consen  177 ELHI  180 (264)
T ss_pred             HHhc
Confidence            7765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.53  E-value=3.8e-16  Score=125.03  Aligned_cols=132  Identities=28%  Similarity=0.383  Sum_probs=120.9

Q ss_pred             CCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChhhhc
Q 037045          276 STLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGR  355 (424)
Q Consensus       276 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~  355 (424)
                      ..+|....+++++.|.+++|+++.+|+. +..+.+|++|++++|.++++|.+++.++.|+.|++  +.+++..+|..+|.
T Consensus        24 ~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnv--gmnrl~~lprgfgs  100 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNV--GMNRLNILPRGFGS  100 (264)
T ss_pred             hhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheec--chhhhhcCccccCC
Confidence            3467778889999999999999999998 77899999999999999999999999999999999  89999999999999


Q ss_pred             cCCCCEEEecCCcCc--ccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeec
Q 037045          356 LQKLEILDVSHTKVQ--CLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELII  423 (424)
Q Consensus       356 l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  423 (424)
                      +|.|..||+.+|.+.  .+|..|..+..|+.|.+++|.+.             ..+.++++|++|+.|.+
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-------------~lp~dvg~lt~lqil~l  157 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-------------ILPPDVGKLTNLQILSL  157 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-------------cCChhhhhhcceeEEee
Confidence            999999999999866  89998999999999999999753             56679999999999876

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.44  E-value=4.1e-13  Score=144.43  Aligned_cols=160  Identities=22%  Similarity=0.201  Sum_probs=75.7

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcCChhhhcccccceeeecc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFLRS  341 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~l~l~~  341 (424)
                      .+|++|++++|.+........+++|++|++++|.+++..+..+..+++|++|++++|.+ ..+|..++.+++|++|++  
T Consensus       118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L--  195 (968)
T PLN00113        118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL--  195 (968)
T ss_pred             CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec--
Confidence            44555555555544322223445555555555555432222244455555555555544 344445555555555555  


Q ss_pred             ccccc-ccCChhhhccCCCCEEEecCCcCc-ccchhhhcCCCCCEeeeccccCCCCcccCCCCC------------CCCc
Q 037045          342 SCSLL-LQLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLIELKYLRVSRVENVGNHTHADAGS------------GEMI  407 (424)
Q Consensus       342 ~~~~~-~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~------------~~~~  407 (424)
                      .++.+ +.+|..++.+++|+.|++++|.+. .+|..++++++|++|++++|.+.+..|..-...            -...
T Consensus       196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  275 (968)
T PLN00113        196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP  275 (968)
T ss_pred             cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence            22222 244555555555555555555543 444445555555555555554443333200000            0112


Q ss_pred             ChhhhhccccCceeecC
Q 037045          408 SLNIISKLRLLEELIIE  424 (424)
Q Consensus       408 ~~~~l~~l~~L~~L~l~  424 (424)
                      ....+.++++|++|+++
T Consensus       276 ~p~~l~~l~~L~~L~Ls  292 (968)
T PLN00113        276 IPPSIFSLQKLISLDLS  292 (968)
T ss_pred             CchhHhhccCcCEEECc
Confidence            33466777778777764

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.40  E-value=4.8e-11  Score=108.98  Aligned_cols=174  Identities=16%  Similarity=0.180  Sum_probs=113.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-----
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-----   76 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-----   76 (424)
                      +++.|+|++|+||||+++.+++.... ... .++|+ +....+..+++..++..++......+.......+...+     
T Consensus        44 ~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~  120 (269)
T TIGR03015        44 GFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFA  120 (269)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            37899999999999999999998741 111 12333 33345777888899988876653333333333333322     


Q ss_pred             ccCcEEEEEcCCCCcc--hhhhh-ccC----CCCCCcEEEEEecchhhhc-----------ccCceEEecCCCHHHHHHH
Q 037045           77 NDRSYVLFLDGVSSEI--NFKEI-GMH----DDHGRGKVVFACRSREFCW-----------QADGVIHVQQLCQREAKKL  138 (424)
Q Consensus        77 ~~~~~LlvlD~~~~~~--~~~~~-~~~----~~~~~~~iiittr~~~~~~-----------~~~~~~~l~~l~~~~~~~l  138 (424)
                      .++++++|+|+++...  .++.+ .+.    .......|++|........           .....+++++++.+|..++
T Consensus       121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~  200 (269)
T TIGR03015       121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREY  200 (269)
T ss_pred             CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHH
Confidence            4678999999998864  33433 111    1122335566654332100           2245678999999999999


Q ss_pred             HHHHhcccC--CCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045          139 FWEVVGVHL--KKYPDIELVADSIVKECGGMPYMLKLIGKEL  178 (424)
Q Consensus       139 ~~~~~~~~~--~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l  178 (424)
                      +...+....  ......++..+.|++.++|.|..|..++..+
T Consensus       201 l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~  242 (269)
T TIGR03015       201 IEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL  242 (269)
T ss_pred             HHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence            988775331  1122345788999999999999999988765

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.38  E-value=1.4e-12  Score=140.34  Aligned_cols=148  Identities=26%  Similarity=0.284  Sum_probs=70.8

Q ss_pred             cceeEEEeeccCCCC-CC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcCChhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSST-LP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~l~l  339 (424)
                      ++|+.|++++|.+.. +| .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+ ..+|..++.+++|++|++
T Consensus       164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  243 (968)
T PLN00113        164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL  243 (968)
T ss_pred             CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence            344444444444432 22 224444444444444444432222244444444444444444 334444444445555554


Q ss_pred             ccccccc-ccCChhhhccCCCCEEEecCCcCc-ccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcccc
Q 037045          340 RSSCSLL-LQLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRL  417 (424)
Q Consensus       340 ~~~~~~~-~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~  417 (424)
                        .++.+ +.+|..++.+++|+.|++++|.+. .+|..+.++++|++|++++|.+.+.            .+..++++++
T Consensus       244 --~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~------------~p~~~~~l~~  309 (968)
T PLN00113        244 --VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE------------IPELVIQLQN  309 (968)
T ss_pred             --cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC------------CChhHcCCCC
Confidence              22222 234444444445555555444433 3444444445555555554443332            3346788999


Q ss_pred             CceeecC
Q 037045          418 LEELIIE  424 (424)
Q Consensus       418 L~~L~l~  424 (424)
                      |++|+++
T Consensus       310 L~~L~l~  316 (968)
T PLN00113        310 LEILHLF  316 (968)
T ss_pred             CcEEECC
Confidence            9999874

>PF05729 NACHT: NACHT domain

Probab=99.37  E-value=8.4e-12  Score=105.11  Aligned_cols=137  Identities=15%  Similarity=0.348  Sum_probs=90.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCC----CceEEEEEeccCCCHH---HHHHHHHHHhcccccccChhHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRR----FDIIFWENINTDGNIR---DIQEIILERLKVNAKELNNDLRADIISK   74 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~   74 (424)
                      |++.|+|.+|+||||+++++++.......    +..++|+..+......   .+...+..+........  ..   .+..
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~---~~~~   75 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPI--EE---LLQE   75 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhh--HH---HHHH
Confidence            68999999999999999999998865333    3456777766643322   34444444433221111  11   1222


Q ss_pred             Hh-ccCcEEEEEcCCCCcchh-h--------hh--c-cC-CCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHH
Q 037045           75 EL-NDRSYVLFLDGVSSEINF-K--------EI--G-MH-DDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREA  135 (424)
Q Consensus        75 ~l-~~~~~LlvlD~~~~~~~~-~--------~~--~-~~-~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~  135 (424)
                      .. ..+++++|+|++++...- .        .+  . ++ ...++++++||+|......     .....+++++|++++.
T Consensus        76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~  155 (166)
T PF05729_consen   76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI  155 (166)
T ss_pred             HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence            22 467999999999886431 1        11  1 12 2356899999999988733     4556899999999999


Q ss_pred             HHHHHHHh
Q 037045          136 KKLFWEVV  143 (424)
Q Consensus       136 ~~l~~~~~  143 (424)
                      .+++.++.
T Consensus       156 ~~~~~~~f  163 (166)
T PF05729_consen  156 KQYLRKYF  163 (166)
T ss_pred             HHHHHHHh
Confidence            99998765

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.33  E-value=7.9e-11  Score=126.08  Aligned_cols=214  Identities=15%  Similarity=0.216  Sum_probs=136.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccccc--------------cChh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNAKE--------------LNND   66 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~--------------~~~~   66 (424)
                      +++.|+|++|.||||++.+++...    .  .+.|+++.. ..++..+...++..++.....              .+..
T Consensus        33 ~~~~v~apaG~GKTtl~~~~~~~~----~--~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  106 (903)
T PRK04841         33 RLVLVTSPAGYGKTTLISQWAAGK----N--NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLS  106 (903)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhC----C--CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHH
Confidence            689999999999999999998643    1  589999865 456677778887777522210              1111


Q ss_pred             HHHHHHHHHhc--cCcEEEEEcCCCCcch--hh-hhc--cCCCCCCcEEEEEecchhhhc-----ccCceEEec----CC
Q 037045           67 LRADIISKELN--DRSYVLFLDGVSSEIN--FK-EIG--MHDDHGRGKVVFACRSREFCW-----QADGVIHVQ----QL  130 (424)
Q Consensus        67 ~~~~~l~~~l~--~~~~LlvlD~~~~~~~--~~-~~~--~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~----~l  130 (424)
                      .....+...+.  +.+++||+||++...+  .. .+.  +.....+.++|||||...-..     ......++.    +|
T Consensus       107 ~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f  186 (903)
T PRK04841        107 SLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAF  186 (903)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCC
Confidence            22222333332  5789999999987532  12 221  223345668889999843221     223345555    89


Q ss_pred             CHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCcccccchhhhhH
Q 037045          131 CQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDR  210 (424)
Q Consensus       131 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~  210 (424)
                      +.+|+.++|....+..     ...+.+.+|.+.|+|+|+++..++..+.......  ......+..     . ....+..
T Consensus       187 ~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~~-----~-~~~~~~~  253 (903)
T PRK04841        187 DHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRLAG-----I-NASHLSD  253 (903)
T ss_pred             CHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhcC-----C-CchhHHH
Confidence            9999999998766432     1245678899999999999999988775542100  011111110     0 0123444


Q ss_pred             HH-hhhhccCCcchHhHHhhhhhcc
Q 037045          211 FF-TLVYKNLSLEQQHCLLGWAIFS  234 (424)
Q Consensus       211 ~l-~~s~~~L~~~~k~~~~~la~fp  234 (424)
                      .+ ...++.||++.++++...|+++
T Consensus       254 ~l~~~v~~~l~~~~~~~l~~~a~~~  278 (903)
T PRK04841        254 YLVEEVLDNVDLETRHFLLRCSVLR  278 (903)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhcccc
Confidence            43 3347899999999999999986

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.33  E-value=3.5e-13  Score=128.27  Aligned_cols=129  Identities=26%  Similarity=0.371  Sum_probs=103.6

Q ss_pred             cceeEEEeeccCCCCCCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecc
Q 037045          263 AHTKRLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRS  341 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~  341 (424)
                      ..|+.|++++|++++.|. ...-.++-+|++++|+++.+|...+-++.-|-+||+++|+++.+|+.+-.+.+|++|.+  
T Consensus       103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~L--  180 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKL--  180 (1255)
T ss_pred             ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhc--
Confidence            677888888888888764 46677888888888888888888788888888888888888888888888888888888  


Q ss_pred             ccccccc--------------------------CChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045          342 SCSLLLQ--------------------------LPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV  393 (424)
Q Consensus       342 ~~~~~~~--------------------------lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~  393 (424)
                      ++|.+..                          +|.++..+.+|..++++.|.+..+|..+.++++|+.|++|+|.++
T Consensus       181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee
Confidence            6665532                          566666777888888888888888888888888888888888763

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.26  E-value=7.8e-10  Score=106.82  Aligned_cols=218  Identities=17%  Similarity=0.152  Sum_probs=131.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc---cccChhHHHHHHHHHhcc-
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA---KELNNDLRADIISKELND-   78 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~l~~~l~~-   78 (424)
                      .+.|+|++|+|||++++.+++........-..+++++....+...++..++.++....   ...+.++....+.+.+.. 
T Consensus        57 ~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  136 (394)
T PRK00411         57 NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDER  136 (394)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence            4789999999999999999998843332234677888777788899999999987532   233455666677776653 


Q ss_pred             -CcEEEEEcCCCCcc------hhhhh-ccCCCCCCc--EEEEEecchhhhc---------ccCceEEecCCCHHHHHHHH
Q 037045           79 -RSYVLFLDGVSSEI------NFKEI-GMHDDHGRG--KVVFACRSREFCW---------QADGVIHVQQLCQREAKKLF  139 (424)
Q Consensus        79 -~~~LlvlD~~~~~~------~~~~~-~~~~~~~~~--~iiittr~~~~~~---------~~~~~~~l~~l~~~~~~~l~  139 (424)
                       +.++||||+++...      .+..+ .......++  .+|.++.......         .....+.+.+++.++..+++
T Consensus       137 ~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il  216 (394)
T PRK00411        137 DRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDIL  216 (394)
T ss_pred             CCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHH
Confidence             46899999998753      23333 111222232  3555555433221         22357899999999999999


Q ss_pred             HHHhcccCCCCccHHHHHHHHHHhc----CCchHHHHHHHHHHh----CC---cchHHHHHHHHHhhhcCcccccchhhh
Q 037045          140 WEVVGVHLKKYPDIELVADSIVKEC----GGMPYMLKLIGKELA----NQ---SEVAIWRATADELRLTSSEEKKELEEV  208 (424)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~I~~~~----~g~Plai~~~a~~l~----~~---~~~~~~~~~~~~l~~~~~~~~~~~~~i  208 (424)
                      ..++..........++.+..+++.+    +..+.++.++-.+..    ..   -+.+......+...             
T Consensus       217 ~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~-------------  283 (394)
T PRK00411        217 KDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE-------------  283 (394)
T ss_pred             HHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH-------------
Confidence            9887432111122234445555554    446666665543221    11   12233333322221             


Q ss_pred             hHHHhhhhccCCcchHhHHhhhhhc
Q 037045          209 DRFFTLVYKNLSLEQQHCLLGWAIF  233 (424)
Q Consensus       209 ~~~l~~s~~~L~~~~k~~~~~la~f  233 (424)
                      .......+..||.+.|.++..++..
T Consensus       284 ~~~~~~~~~~L~~~~k~~L~ai~~~  308 (394)
T PRK00411        284 IVHLSEVLRTLPLHEKLLLRAIVRL  308 (394)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            1223456788988888887776644

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.24  E-value=4.6e-13  Score=127.44  Aligned_cols=145  Identities=20%  Similarity=0.336  Sum_probs=105.5

Q ss_pred             cceeEEEeeccCCCCCCCC-cCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecc
Q 037045          263 AHTKRLSLFGFPSSTLPDM-PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRS  341 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~  341 (424)
                      .+|+.++++.|.++.+|.+ ..+++|+.|++++|.++++... .....+|+.|++++|.+..+|..+++++.|+.|.+  
T Consensus       222 ~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~-~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~--  298 (1255)
T KOG0444|consen  222 HNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMT-EGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYA--  298 (1255)
T ss_pred             hhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeecc-HHHHhhhhhhccccchhccchHHHhhhHHHHHHHh--
Confidence            5777788888888777765 7777888888888888766554 44566777777777777777777777777777777  


Q ss_pred             cccccc--cCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCc
Q 037045          342 SCSLLL--QLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLE  419 (424)
Q Consensus       342 ~~~~~~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  419 (424)
                      .+|.+.  .+|+.+|++..|..+.+.+|.+.-.|.++..+.+|+.|.+++|.             ....++.+.-|+.|+
T Consensus       299 n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-------------LiTLPeaIHlL~~l~  365 (1255)
T KOG0444|consen  299 NNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-------------LITLPEAIHLLPDLK  365 (1255)
T ss_pred             ccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-------------eeechhhhhhcCCcc
Confidence            666654  67777777777777777777777777777777777777777775             334555666667777


Q ss_pred             eeec
Q 037045          420 ELII  423 (424)
Q Consensus       420 ~L~l  423 (424)
                      .|++
T Consensus       366 vLDl  369 (1255)
T KOG0444|consen  366 VLDL  369 (1255)
T ss_pred             eeec
Confidence            6665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.23  E-value=9.3e-12  Score=103.88  Aligned_cols=120  Identities=26%  Similarity=0.313  Sum_probs=29.4

Q ss_pred             ceeEEEeeccCCCCCCCCc-CcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhh-hcccccceeeecc
Q 037045          264 HTKRLSLFGFPSSTLPDMP-NCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRS  341 (424)
Q Consensus       264 ~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~-~~l~~L~~l~l~~  341 (424)
                      .++.|++.+|.++.+.... .+.+|+.|++++|.++.+..  +..++.|+.|++++|++..+.+.+ ..+++|+.|++  
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L--   95 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL--   95 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE---
T ss_pred             ccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC--
Confidence            3444555555555444332 34445555555555554433  344455555555555554443322 23445555555  


Q ss_pred             cccccccCC--hhhhccCCCCEEEecCCcCcccch----hhhcCCCCCEeee
Q 037045          342 SCSLLLQLP--AEIGRLQKLEILDVSHTKVQCLPS----EIGQLIELKYLRV  387 (424)
Q Consensus       342 ~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~l~l  387 (424)
                      ++|.+.++.  ..+..+++|+.|++.+|+++..+.    -+..+|+|+.|+-
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            444444332  233444455555555554443322    1344444444443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=99.17  E-value=1.9e-09  Score=107.06  Aligned_cols=216  Identities=16%  Similarity=0.177  Sum_probs=147.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccc--------------cccChh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNA--------------KELNND   66 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~--------------~~~~~~   66 (424)
                      |.+.|.-|+|.|||||+.+++...   ..-..+.|+++.. ..++..+...++..++.-.              ...+..
T Consensus        38 RL~li~APAGfGKttl~aq~~~~~---~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~  114 (894)
T COG2909          38 RLILISAPAGFGKTTLLAQWRELA---ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLE  114 (894)
T ss_pred             eEEEEeCCCCCcHHHHHHHHHHhc---CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHH
Confidence            689999999999999999999833   3445689999876 4678889999988887332              122222


Q ss_pred             HHHHHHHHHhcc--CcEEEEEcCCCCcch---hhhhc--cCCCCCCcEEEEEecchhhhc-----ccCceEEec----CC
Q 037045           67 LRADIISKELND--RSYVLFLDGVSSEIN---FKEIG--MHDDHGRGKVVFACRSREFCW-----QADGVIHVQ----QL  130 (424)
Q Consensus        67 ~~~~~l~~~l~~--~~~LlvlD~~~~~~~---~~~~~--~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~----~l  130 (424)
                      .....+...+..  +++.+||||..-..+   -+.+.  +...-++-..|+|||++.-..     -.+..++++    .|
T Consensus       115 ~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf  194 (894)
T COG2909         115 SLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRF  194 (894)
T ss_pred             HHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcC
Confidence            233344444433  589999999765432   22221  123445668999999877655     334444555    58


Q ss_pred             CHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCcccccchhhhhH
Q 037045          131 CQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDR  210 (424)
Q Consensus       131 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~  210 (424)
                      +.+|+.+||....+..     ..+..++.+.+...|.+-|+.+++=..+.+.+.+.-...+.....          .+..
T Consensus       195 ~~eE~~~fl~~~~~l~-----Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~----------~l~d  259 (894)
T COG2909         195 DTEEAAAFLNDRGSLP-----LDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAAS----------HLSD  259 (894)
T ss_pred             ChHHHHHHHHHcCCCC-----CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHH----------HHHH
Confidence            9999999998876433     335568899999999999999999988854444433332222211          2222


Q ss_pred             -HHhhhhccCCcchHhHHhhhhhccC
Q 037045          211 -FFTLVYKNLSLEQQHCLLGWAIFST  235 (424)
Q Consensus       211 -~l~~s~~~L~~~~k~~~~~la~fp~  235 (424)
                       ...--++.||++.|.++..+|+++.
T Consensus       260 YL~eeVld~Lp~~l~~FLl~~svl~~  285 (894)
T COG2909         260 YLVEEVLDRLPPELRDFLLQTSVLSR  285 (894)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhHHH
Confidence             2344678899999999999999764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.16  E-value=2.7e-11  Score=114.75  Aligned_cols=128  Identities=20%  Similarity=0.301  Sum_probs=106.3

Q ss_pred             cceeEEEeeccCCCCCCCCcCcc-cccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeec
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCC-EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLR  340 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~  340 (424)
                      ++|+.+++-+|.++.+|.++..+ +|+.|++.+|.++.+..+.+..++.|+.||++.|.+..+| ++|..-.++.+|++ 
T Consensus       102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~L-  180 (873)
T KOG4194|consen  102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNL-  180 (873)
T ss_pred             CcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEee-
Confidence            88899999999999988875554 4999999999999888887888889999999999887777 45666678899999 


Q ss_pred             ccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccC
Q 037045          341 SSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVEN  392 (424)
Q Consensus       341 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~  392 (424)
                       +.|+++.+-. .|..+.+|.+|.++.|+++.+|.. |.++++|+.|++..|.+
T Consensus       181 -a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  181 -ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             -ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence             8888887754 577778888899999998888876 67788999998888865

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.12  E-value=2.1e-11  Score=115.41  Aligned_cols=127  Identities=24%  Similarity=0.296  Sum_probs=59.5

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l  339 (424)
                      +.||+|+++.|.++++|  .+..-.+++.|++++|.++.+....|..+.+|..|.+++|+++.+|+ .|..+++|+.|++
T Consensus       149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL  228 (873)
T KOG4194|consen  149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL  228 (873)
T ss_pred             hhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence            44555555555555533  22333455555555555555444445555555555555555555543 2334555555555


Q ss_pred             cccccccccC-ChhhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeecccc
Q 037045          340 RSSCSLLLQL-PAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVE  391 (424)
Q Consensus       340 ~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~  391 (424)
                        ..|++... -..|..+++|+.+.+..|.++.+-++ |..|.++.+|++..|.
T Consensus       229 --nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~  280 (873)
T KOG4194|consen  229 --NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR  280 (873)
T ss_pred             --cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence              44444433 12333444444444444444444333 3444444444444443

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.11  E-value=7.3e-09  Score=94.78  Aligned_cols=198  Identities=15%  Similarity=0.168  Sum_probs=122.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -..+|||+|+||||||+-++...  ...|.     .++...+-.+-++++++.-             .  .....+++++
T Consensus        50 SmIl~GPPG~GKTTlA~liA~~~--~~~f~-----~~sAv~~gvkdlr~i~e~a-------------~--~~~~~gr~ti  107 (436)
T COG2256          50 SMILWGPPGTGKTTLARLIAGTT--NAAFE-----ALSAVTSGVKDLREIIEEA-------------R--KNRLLGRRTI  107 (436)
T ss_pred             eeEEECCCCCCHHHHHHHHHHhh--CCceE-----EeccccccHHHHHHHHHHH-------------H--HHHhcCCceE
Confidence            35689999999999999999987  45553     3333222222222222211             0  1122478999


Q ss_pred             EEEcCCCCcch-hhhhccCCCCCCcEEEE--Eecchhhhc-----ccCceEEecCCCHHHHHHHHHHHhcccCC-----C
Q 037045           83 LFLDGVSSEIN-FKEIGMHDDHGRGKVVF--ACRSREFCW-----QADGVIHVQQLCQREAKKLFWEVVGVHLK-----K  149 (424)
Q Consensus        83 lvlD~~~~~~~-~~~~~~~~~~~~~~iii--ttr~~~~~~-----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~-----~  149 (424)
                      |++|+++...- .++..+|..+.|.-|+|  ||.+.....     +...++++++|+.++..+++.+.+.....     .
T Consensus       108 LflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~  187 (436)
T COG2256         108 LFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQI  187 (436)
T ss_pred             EEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCccc
Confidence            99999998642 23334667777887776  666655544     88899999999999999999985533311     1


Q ss_pred             CccHHHHHHHHHHhcCCchHH----HHHHHHHHhCCc--chHHHHHHHHHhhhcCcccccch-hhhhHHHhhhhccCCcc
Q 037045          150 YPDIELVADSIVKECGGMPYM----LKLIGKELANQS--EVAIWRATADELRLTSSEEKKEL-EEVDRFFTLVYKNLSLE  222 (424)
Q Consensus       150 ~~~~~~~~~~I~~~~~g~Pla----i~~~a~~l~~~~--~~~~~~~~~~~l~~~~~~~~~~~-~~i~~~l~~s~~~L~~~  222 (424)
                      ....++....+++.+.|....    +++++..-+...  ..+..++.+.+-.. ..++..+. .++-.++.-|...-+++
T Consensus       188 ~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~-~~Dk~gD~hYdliSA~hKSvRGSD~d  266 (436)
T COG2256         188 IVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSA-RFDKDGDAHYDLISALHKSVRGSDPD  266 (436)
T ss_pred             ccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhh-ccCCCcchHHHHHHHHHHhhccCCcC
Confidence            113355678899999997743    333343333331  23444444444444 33333223 67777777777766666


Q ss_pred             h
Q 037045          223 Q  223 (424)
Q Consensus       223 ~  223 (424)
                      +
T Consensus       267 A  267 (436)
T COG2256         267 A  267 (436)
T ss_pred             H
Confidence            4

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.10  E-value=2.1e-11  Score=110.54  Aligned_cols=128  Identities=20%  Similarity=0.301  Sum_probs=92.9

Q ss_pred             cceeEEEeeccCCCCCCC-------------------------CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEcc
Q 037045          263 AHTKRLSLFGFPSSTLPD-------------------------MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLH  317 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~-------------------------~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  317 (424)
                      .-++.+++++|++.++|.                         ...+++|+.|++++|.+.++|.+ +..+-.||.|+++
T Consensus       388 ~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS  466 (565)
T KOG0472|consen  388 EIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLS  466 (565)
T ss_pred             cceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheeccc
Confidence            346677777776666553                         25666777777777777777777 4556667777777


Q ss_pred             CCCCCcCChhhhcccccceeeecccccccccCChh-hhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045          318 ETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV  393 (424)
Q Consensus       318 ~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~  393 (424)
                      .|+|..+|..+-.+.-++++-.  +++.++.++.+ ++++.+|.+||+.+|.+..+|+.+++|++|++|.+++|+|.
T Consensus       467 ~NrFr~lP~~~y~lq~lEtlla--s~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  467 FNRFRMLPECLYELQTLETLLA--SNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccccchHHHhhHHHHHHHHh--ccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            7777777765555565666655  66777777654 78888888888888888888888888888888888888764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=2.2e-10  Score=95.64  Aligned_cols=139  Identities=22%  Similarity=0.262  Sum_probs=57.4

Q ss_pred             eeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhc-ccCCCcEEEccCCCCCcCChhhhcccccceeeeccccccccc
Q 037045          270 LFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFD-YMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQ  348 (424)
Q Consensus       270 l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~  348 (424)
                      +..+.++..+...++..++.|++++|.++.+..  +. .+.+|+.|++++|.+..++ .+..+++|++|++  ++|.+.+
T Consensus         4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L--~~N~I~~   78 (175)
T PF14580_consen    4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDL--SNNRISS   78 (175)
T ss_dssp             --------------------------------S----TT-TT--EEE-TTS--S--T-T----TT--EEE----SS---S
T ss_pred             ccccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc-CccChhhhhhccc--CCCCCCc
Confidence            444556666777777889999999999998754  43 5789999999999998885 4778999999999  9999999


Q ss_pred             CChhh-hccCCCCEEEecCCcCcccc--hhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          349 LPAEI-GRLQKLEILDVSHTKVQCLP--SEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       349 lp~~~-~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      ++..+ ..+++|+.|.+++|+|..+-  ..+..+++|+.|++.+|++...         .......+..+++|+.||
T Consensus        79 i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~---------~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   79 ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK---------KNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             -CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS---------TTHHHHHHHH-TT-SEET
T ss_pred             cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch---------hhHHHHHHHHcChhheeC
Confidence            97665 46899999999999987553  3478999999999999987543         556777889999999886

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.07  E-value=1.8e-11  Score=110.98  Aligned_cols=147  Identities=22%  Similarity=0.292  Sum_probs=101.6

Q ss_pred             cceeEEEeeccCCCCCCC-C---cCcccccEEEccCCCCCCCChH-----------------------HhcccCCCcEEE
Q 037045          263 AHTKRLSLFGFPSSTLPD-M---PNCCEILTLILEGKRLEKLPTS-----------------------FFDYMCHLQLLD  315 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~-~---~~~~~L~~L~l~~~~l~~~~~~-----------------------~~~~~~~L~~L~  315 (424)
                      -+.+.|++++-+++.+|. +   +.-..++..++++|++.++|..                       .+++++.|..|+
T Consensus       362 i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~  441 (565)
T KOG0472|consen  362 ITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLD  441 (565)
T ss_pred             hhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeee
Confidence            567889999999999874 2   3333478889999888766654                       244555566666


Q ss_pred             ccCCCCCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCC
Q 037045          316 LHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVG  394 (424)
Q Consensus       316 l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~  394 (424)
                      +++|-+.++|..++.+..|+.+++  +.++...+|.....+..+.++-.+.|++..+|.. +.+|.+|.+|++..|.+  
T Consensus       442 L~NN~Ln~LP~e~~~lv~Lq~Lnl--S~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl--  517 (565)
T KOG0472|consen  442 LSNNLLNDLPEEMGSLVRLQTLNL--SFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL--  517 (565)
T ss_pred             cccchhhhcchhhhhhhhhheecc--cccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch--
Confidence            665555556655555555666666  5555555565555555555555555666656544 88999999999999874  


Q ss_pred             CcccCCCCCCCCcChhhhhccccCceeecC
Q 037045          395 NHTHADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       395 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                                 -..++.+|+|++|++|.|.
T Consensus       518 -----------q~IPp~LgnmtnL~hLeL~  536 (565)
T KOG0472|consen  518 -----------QQIPPILGNMTNLRHLELD  536 (565)
T ss_pred             -----------hhCChhhccccceeEEEec
Confidence                       3677899999999999874

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=99.02  E-value=3.7e-09  Score=94.23  Aligned_cols=169  Identities=16%  Similarity=0.238  Sum_probs=87.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHH---------HHHHHhccccc-----------
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQE---------IILERLKVNAK-----------   61 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~---------~i~~~l~~~~~-----------   61 (424)
                      +.+.|+|+.|+|||+|++++.+...  ..-..++|+.............         .+...+.....           
T Consensus        21 ~~~~l~G~rg~GKTsLl~~~~~~~~--~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   98 (234)
T PF01637_consen   21 QHILLYGPRGSGKTSLLKEFINELK--EKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDL   98 (234)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHCT----EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS
T ss_pred             cEEEEEcCCcCCHHHHHHHHHHHhh--hcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcc
Confidence            5789999999999999999999883  2222455555444332221111         11122211110           


Q ss_pred             ccChhHHHHHHHHHhc--cCcEEEEEcCCCCcc-hh---hhh-----cc-C--CCCCCcEEEEEecchhhhc--------
Q 037045           62 ELNNDLRADIISKELN--DRSYVLFLDGVSSEI-NF---KEI-----GM-H--DDHGRGKVVFACRSREFCW--------  119 (424)
Q Consensus        62 ~~~~~~~~~~l~~~l~--~~~~LlvlD~~~~~~-~~---~~~-----~~-~--~~~~~~~iiittr~~~~~~--------  119 (424)
                      ..........+.+.+.  +++++||+|+++... ..   ..+     .+ .  ....+..+|++........        
T Consensus        99 ~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~  178 (234)
T PF01637_consen   99 SEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSP  178 (234)
T ss_dssp             -GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTST
T ss_pred             hhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCc
Confidence            1122223333333343  246999999998776 11   111     11 1  2233444455544322211        


Q ss_pred             --ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHH
Q 037045          120 --QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKL  173 (424)
Q Consensus       120 --~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~  173 (424)
                        .....+.+++|+.+++++++....... ..-+..++..++|++.++|+|..|..
T Consensus       179 ~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~  233 (234)
T PF01637_consen  179 LFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE  233 (234)
T ss_dssp             TTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred             cccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence              445559999999999999999976544 11123456679999999999998864

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.02  E-value=6.3e-08  Score=92.58  Aligned_cols=231  Identities=12%  Similarity=0.106  Sum_probs=129.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccC-CC--C-ceEEEEEeccCCCHHHHHHHHHHHhc---ccc--cccChhHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGES-RR--F-DIIFWENINTDGNIRDIQEIILERLK---VNA--KELNNDLRADIIS   73 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~-~~--f-~~~~wv~~~~~~~~~~~~~~i~~~l~---~~~--~~~~~~~~~~~l~   73 (424)
                      .+.|+|++|+|||++++.+++..... ..  . -..+|+++....+...++..++.++.   ...  ...+..+....+.
T Consensus        42 ~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~  121 (365)
T TIGR02928        42 NVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLY  121 (365)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHH
Confidence            57899999999999999999876321 11  1 24678888877788899999999984   221  2223444455555


Q ss_pred             HHhc--cCcEEEEEcCCCCcc-----hhhhh-cc--CCCC--CCcEEEEEecchhhhc---------ccCceEEecCCCH
Q 037045           74 KELN--DRSYVLFLDGVSSEI-----NFKEI-GM--HDDH--GRGKVVFACRSREFCW---------QADGVIHVQQLCQ  132 (424)
Q Consensus        74 ~~l~--~~~~LlvlD~~~~~~-----~~~~~-~~--~~~~--~~~~iiittr~~~~~~---------~~~~~~~l~~l~~  132 (424)
                      +.+.  +++++||||+++...     .+..+ ..  ....  .+..+|.+++......         .....+.+.+++.
T Consensus       122 ~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~  201 (365)
T TIGR02928       122 KELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDA  201 (365)
T ss_pred             HHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCH
Confidence            5553  457899999998762     12222 11  1111  2334454554332211         2235689999999


Q ss_pred             HHHHHHHHHHhccc---CCCCccHHHHHHHHHHhcCCchHHHHHHH-HHH----hCC---cchHHHHHHHHHhhhcCccc
Q 037045          133 REAKKLFWEVVGVH---LKKYPDIELVADSIVKECGGMPYMLKLIG-KEL----ANQ---SEVAIWRATADELRLTSSEE  201 (424)
Q Consensus       133 ~~~~~l~~~~~~~~---~~~~~~~~~~~~~I~~~~~g~Plai~~~a-~~l----~~~---~~~~~~~~~~~~l~~~~~~~  201 (424)
                      ++..+++..++...   ..-.+..-+.+..++..+.|.+..+..+. ...    ...   -+.+......+.+.      
T Consensus       202 ~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~------  275 (365)
T TIGR02928       202 EELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE------  275 (365)
T ss_pred             HHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH------
Confidence            99999999887521   11112222334456666678884433222 111    111   12222222222221      


Q ss_pred             ccchhhhhHHHhhhhccCCcchHhHHhhhhhcc--CCCCCChHHHHh
Q 037045          202 KKELEEVDRFFTLVYKNLSLEQQHCLLGWAIFS--TGLELSQDYIID  246 (424)
Q Consensus       202 ~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~fp--~~~~i~~~~Li~  246 (424)
                             ..........|+.+.+.++..++..-  ++..+....+..
T Consensus       276 -------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~  315 (365)
T TIGR02928       276 -------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYE  315 (365)
T ss_pred             -------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence                   12233456778888777776665332  233455555554

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PF13173 AAA_14: AAA domain

Probab=98.96  E-value=3.2e-09  Score=85.06  Aligned_cols=114  Identities=20%  Similarity=0.231  Sum_probs=79.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +++.|.|+-|+||||++++++++..   ....++|+++...........+                ..+.+.+....++.
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~   63 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELIKPGKK   63 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhhccCCc
Confidence            5899999999999999999999883   4456788887665331111000                12233333334788


Q ss_pred             EEEEcCCCCcchhhhh--ccCCCCCCcEEEEEecchhhhc--------ccCceEEecCCCHHH
Q 037045           82 VLFLDGVSSEINFKEI--GMHDDHGRGKVVFACRSREFCW--------QADGVIHVQQLCQRE  134 (424)
Q Consensus        82 LlvlD~~~~~~~~~~~--~~~~~~~~~~iiittr~~~~~~--------~~~~~~~l~~l~~~~  134 (424)
                      +++||+++...+|...  .+.+.....+|++|+.+.....        +....++|.+|+.+|
T Consensus        64 ~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E  126 (128)
T PF13173_consen   64 YIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE  126 (128)
T ss_pred             EEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence            9999999999888777  3335456789999998766653        455677888888766

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.96  E-value=8.3e-11  Score=117.03  Aligned_cols=125  Identities=28%  Similarity=0.409  Sum_probs=100.4

Q ss_pred             cceeEEEeeccCCCC--CCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeec
Q 037045          263 AHTKRLSLFGFPSST--LPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLR  340 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~  340 (424)
                      +.|+.|++.+|.++.  +|-+.+..+|+.|++++|.++.+|+.++..+..|+.|++++|++..+|..+-.++.|++|.. 
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a-  437 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA-  437 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh-
Confidence            567778888888887  67778888888888888888888888888888888888888888888888888888888887 


Q ss_pred             ccccccccCChhhhccCCCCEEEecCCcCc--ccchhhhcCCCCCEeeecccc
Q 037045          341 SSCSLLLQLPAEIGRLQKLEILDVSHTKVQ--CLPSEIGQLIELKYLRVSRVE  391 (424)
Q Consensus       341 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~l~l~~n~  391 (424)
                       ..|.+..+| .+..++.|+.+|++.|.++  .+|..... ++|++|++++|.
T Consensus       438 -hsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  438 -HSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             -cCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence             778888888 6778888888888888876  44443222 688888888885

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=98.95  E-value=2.9e-08  Score=93.06  Aligned_cols=213  Identities=13%  Similarity=0.106  Sum_probs=109.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc----cccC--hhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA----KELN--NDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~~~--~~~~~~~l~~~   75 (424)
                      +.+.|+|++|+|||++|+.+++...  ..+   .++..... .....+..++..+....    ++.+  .......+...
T Consensus        52 ~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~~~~-~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~  125 (328)
T PRK00080         52 DHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSGPAL-EKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPA  125 (328)
T ss_pred             CcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEecccc-cChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHH
Confidence            3578999999999999999999883  221   12222111 11122223333322211    0000  01112223333


Q ss_pred             hccCcEEEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCCc
Q 037045           76 LNDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKYP  151 (424)
Q Consensus        76 l~~~~~LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~  151 (424)
                      +.+.+..+++|+......+... .+   ..+-|..|++...+..    .....+++++++.++..+++.+.+...  ...
T Consensus       126 ~e~~~~~~~l~~~~~~~~~~~~-l~---~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~--~~~  199 (328)
T PRK00080        126 MEDFRLDIMIGKGPAARSIRLD-LP---PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL--GVE  199 (328)
T ss_pred             HHhcceeeeeccCccccceeec-CC---CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc--CCC
Confidence            3344444444443332211110 11   1334555666444333    234578999999999999999888764  223


Q ss_pred             cHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCcccccchhhhhHHHhhhhccCCcchHhHHh-hh
Q 037045          152 DIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQQHCLL-GW  230 (424)
Q Consensus       152 ~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~~~~-~l  230 (424)
                      ..++.+..|++.|+|.|..+..+...+..      |....   .. ..............+...+..|++..+..+. ..
T Consensus       200 ~~~~~~~~ia~~~~G~pR~a~~~l~~~~~------~a~~~---~~-~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~  269 (328)
T PRK00080        200 IDEEGALEIARRSRGTPRIANRLLRRVRD------FAQVK---GD-GVITKEIADKALDMLGVDELGLDEMDRKYLRTII  269 (328)
T ss_pred             cCHHHHHHHHHHcCCCchHHHHHHHHHHH------HHHHc---CC-CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHH
Confidence            34567899999999999766555543221      11100   00 0011111123334455667778777777776 45


Q ss_pred             hhccCC
Q 037045          231 AIFSTG  236 (424)
Q Consensus       231 a~fp~~  236 (424)
                      ..|+.+
T Consensus       270 ~~~~~~  275 (328)
T PRK00080        270 EKFGGG  275 (328)
T ss_pred             HHcCCC
Confidence            555544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.94  E-value=8.6e-11  Score=116.94  Aligned_cols=146  Identities=24%  Similarity=0.307  Sum_probs=116.6

Q ss_pred             cceeEEEeeccCCCCCCC-------------------------C--cCcccccEEEccCCCCCC-CChHHhcccCCCcEE
Q 037045          263 AHTKRLSLFGFPSSTLPD-------------------------M--PNCCEILTLILEGKRLEK-LPTSFFDYMCHLQLL  314 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~-------------------------~--~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L  314 (424)
                      ..|++|+++.|.+..+|.                         .  ...+.|+.|.+.+|.+++ ..+. +..+++|++|
T Consensus       310 ~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVL  388 (1081)
T KOG0618|consen  310 KSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVL  388 (1081)
T ss_pred             ceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh-hccccceeee
Confidence            677777777776666543                         1  233447778888888885 2232 7789999999


Q ss_pred             EccCCCCCcCCh-hhhcccccceeeecccccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045          315 DLHETNIGCLPP-SISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV  393 (424)
Q Consensus       315 ~l~~~~~~~~p~-~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~  393 (424)
                      ++++|++..+|. .+.++..|+.|++  ++|.+..+|.++..++.|++|...+|++..+| ++.+++.|+.++++.|.+.
T Consensus       389 hLsyNrL~~fpas~~~kle~LeeL~L--SGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  389 HLSYNRLNSFPASKLRKLEELEELNL--SGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             eecccccccCCHHHHhchHHhHHHhc--ccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhh
Confidence            999999999985 5789999999999  99999999999999999999999999999999 7999999999999999764


Q ss_pred             CCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045          394 GNHTHADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                      ..           ...+.+.+ ++|++|++|
T Consensus       466 ~~-----------~l~~~~p~-p~LkyLdlS  484 (1081)
T KOG0618|consen  466 EV-----------TLPEALPS-PNLKYLDLS  484 (1081)
T ss_pred             hh-----------hhhhhCCC-cccceeecc
Confidence            32           22222222 788888875

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.92  E-value=2.7e-09  Score=86.04  Aligned_cols=113  Identities=22%  Similarity=0.307  Sum_probs=81.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccC---CCCceEEEEEeccCCCHHHHHHHHHHHhcccccc-cChhHHHHHHHHHhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGES---RRFDIIFWENINTDGNIRDIQEIILERLKVNAKE-LNNDLRADIISKELN   77 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~   77 (424)
                      +++.|+|++|+|||++++++++.....   ..-..++|+.+....+...+.+.++++++..... .+..+....+.+.+.
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~   84 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD   84 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence            468999999999999999999987310   1134578999999889999999999999988754 667777788888887


Q ss_pred             cCcE-EEEEcCCCCc-c--hhhhhccCCCCCCcEEEEEecc
Q 037045           78 DRSY-VLFLDGVSSE-I--NFKEIGMHDDHGRGKVVFACRS  114 (424)
Q Consensus        78 ~~~~-LlvlD~~~~~-~--~~~~~~~~~~~~~~~iiittr~  114 (424)
                      ..+. +||+|+++.. .  .++.+.--....+.++|+..+.
T Consensus        85 ~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~  125 (131)
T PF13401_consen   85 RRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP  125 (131)
T ss_dssp             HCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred             hcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence            7655 9999999886 3  2333311133667778777665

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=98.92  E-value=4.5e-08  Score=91.06  Aligned_cols=162  Identities=14%  Similarity=0.125  Sum_probs=90.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc----c--ccChhHHHHHHHHHh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA----K--ELNNDLRADIISKEL   76 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~--~~~~~~~~~~l~~~l   76 (424)
                      .+.++|++|+|||+||+.+++...  ..+   ..+..........+. ..+..++...    +  ..-.......+...+
T Consensus        32 ~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~~~l~-~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~  105 (305)
T TIGR00635        32 HLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKPGDLA-AILTNLEEGDVLFIDEIHRLSPAVEELLYPAM  105 (305)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCchhHH-HHHHhcccCCEEEEehHhhhCHHHHHHhhHHH
Confidence            478999999999999999999873  222   122221111222222 2222222211    0  000111223344444


Q ss_pred             ccCcEEEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCCcc
Q 037045           77 NDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPD  152 (424)
Q Consensus        77 ~~~~~LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~  152 (424)
                      .+.+..+|+++......+...    ..+.+-|..||+...+..    .....+.+++++.++..+++.+.+...  ....
T Consensus       106 ~~~~~~~v~~~~~~~~~~~~~----~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~--~~~~  179 (305)
T TIGR00635       106 EDFRLDIVIGKGPSARSVRLD----LPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLL--NVEI  179 (305)
T ss_pred             hhhheeeeeccCccccceeec----CCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh--CCCc
Confidence            445555555554333222211    112344555666544433    234567999999999999999888654  2233


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHH
Q 037045          153 IELVADSIVKECGGMPYMLKLIGK  176 (424)
Q Consensus       153 ~~~~~~~I~~~~~g~Plai~~~a~  176 (424)
                      .++.+..|++.|+|.|..+..++.
T Consensus       180 ~~~al~~ia~~~~G~pR~~~~ll~  203 (305)
T TIGR00635       180 EPEAALEIARRSRGTPRIANRLLR  203 (305)
T ss_pred             CHHHHHHHHHHhCCCcchHHHHHH
Confidence            356778899999999977655554

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK06893 DNA replication initiation factor; Validated

Probab=98.90  E-value=1.9e-08  Score=89.14  Aligned_cols=148  Identities=9%  Similarity=0.086  Sum_probs=92.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      .+.|+|++|+|||+|++.+++...  .....+.|+.+...   .....+                    +.+.+. +.-+
T Consensus        41 ~l~l~G~~G~GKThL~~ai~~~~~--~~~~~~~y~~~~~~---~~~~~~--------------------~~~~~~-~~dl   94 (229)
T PRK06893         41 FFYIWGGKSSGKSHLLKAVSNHYL--LNQRTAIYIPLSKS---QYFSPA--------------------VLENLE-QQDL   94 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEeeHHHh---hhhhHH--------------------HHhhcc-cCCE
Confidence            578999999999999999999873  23334677776421   001111                    111111 2348


Q ss_pred             EEEcCCCCc---chhhhhc---cC-CCCCCcEEEE-Eecc---------hhhhc--ccCceEEecCCCHHHHHHHHHHHh
Q 037045           83 LFLDGVSSE---INFKEIG---MH-DDHGRGKVVF-ACRS---------REFCW--QADGVIHVQQLCQREAKKLFWEVV  143 (424)
Q Consensus        83 lvlD~~~~~---~~~~~~~---~~-~~~~~~~iii-ttr~---------~~~~~--~~~~~~~l~~l~~~~~~~l~~~~~  143 (424)
                      |++||++..   ..|+...   +. ....+..+|+ |++.         ..+..  .....+++++++.++.++++++.+
T Consensus        95 LilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a  174 (229)
T PRK06893         95 VCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNA  174 (229)
T ss_pred             EEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHH
Confidence            999999874   2333221   11 1223455544 4443         12222  556788999999999999999888


Q ss_pred             cccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045          144 GVHLKKYPDIELVADSIVKECGGMPYMLKLIGKEL  178 (424)
Q Consensus       144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l  178 (424)
                      ...  .-.-.++....|++.+.|....+..+-..+
T Consensus       175 ~~~--~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l  207 (229)
T PRK06893        175 YQR--GIELSDEVANFLLKRLDRDMHTLFDALDLL  207 (229)
T ss_pred             HHc--CCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            643  233346678889999998877766555433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.88  E-value=3.1e-10  Score=107.37  Aligned_cols=127  Identities=26%  Similarity=0.322  Sum_probs=114.1

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ..++.++++.|++..+|.-.+...|+.|.+++|+++..|.+ ++....|..|+.+.|.+..+|..++++.+|+.|++  .
T Consensus       121 ~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~v--r  197 (722)
T KOG0532|consen  121 EALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV--R  197 (722)
T ss_pred             hHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH--h
Confidence            56788899999999988776777799999999999999988 66788899999999999999999999999999999  8


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV  393 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~  393 (424)
                      .+.+..+|..+.. -.|..||+++|.+..+|-.|.+|+.|++|.|..|++.
T Consensus       198 Rn~l~~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  198 RNHLEDLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhhhCCHHHhC-CceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence            8899999999884 4589999999999999999999999999999999864

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.85  E-value=1.7e-10  Score=109.07  Aligned_cols=142  Identities=26%  Similarity=0.302  Sum_probs=122.9

Q ss_pred             ceeEEEeeccCCCCCCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          264 HTKRLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       264 ~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      .|+.+.+..|.+..+|. ...+..|++|+++.|.++..|.. ++.++ |++|-+++|++..+|..++.+..|..|++  +
T Consensus        99 ~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~--s  174 (722)
T KOG0532|consen   99 SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDV--S  174 (722)
T ss_pred             HHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcCc-ceeEEEecCccccCCcccccchhHHHhhh--h
Confidence            34556667778887664 48889999999999999999988 56665 99999999999999999999999999999  8


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      +|.+..+|+.++.+.+|+.|.+..|.+..+|.++..++ |..|++|.|++.             ..+-.+.+|+.|++|-
T Consensus       175 ~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis-------------~iPv~fr~m~~Lq~l~  240 (722)
T KOG0532|consen  175 KNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKIS-------------YLPVDFRKMRHLQVLQ  240 (722)
T ss_pred             hhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCcee-------------ecchhhhhhhhheeee
Confidence            99999999999999999999999999999999988777 999999999753             4556889999999886


Q ss_pred             c
Q 037045          423 I  423 (424)
Q Consensus       423 l  423 (424)
                      |
T Consensus       241 L  241 (722)
T KOG0532|consen  241 L  241 (722)
T ss_pred             e
Confidence            5

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.84  E-value=3.3e-10  Score=99.19  Aligned_cols=151  Identities=22%  Similarity=0.248  Sum_probs=119.9

Q ss_pred             CChHHHHhhhhhcchhhh-hhhccc---cceeEEEeeccCCCCCCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcE
Q 037045          239 LSQDYIIDGWAAQKFLAS-FNKIGD---AHTKRLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQL  313 (424)
Q Consensus       239 i~~~~Li~~w~~~~~~~~-~~d~~~---~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~  313 (424)
                      +|.+.+.+.|..|+-... |--...   .-|+.|++++|.++.+.. +.-.+.++.|+++.|.+..+..  +..+++|+.
T Consensus       256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~  333 (490)
T KOG1259|consen  256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQL  333 (490)
T ss_pred             cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceE
Confidence            455666667766654322 100011   568889999999998764 4667899999999999998877  678999999


Q ss_pred             EEccCCCCCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEecCCcCcccc--hhhhcCCCCCEeeecccc
Q 037045          314 LDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLP--SEIGQLIELKYLRVSRVE  391 (424)
Q Consensus       314 L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~l~l~~n~  391 (424)
                      ||+++|.+..+...-.++.++.+|++  +.|.+.++. .++++.+|..||+++|+|..+-  ..|+++++|.++.+.+|+
T Consensus       334 LDLS~N~Ls~~~Gwh~KLGNIKtL~L--a~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  334 LDLSGNLLAECVGWHLKLGNIKTLKL--AQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             eecccchhHhhhhhHhhhcCEeeeeh--hhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            99999999888777788999999999  888888774 5888999999999999988552  358999999999999998


Q ss_pred             CCC
Q 037045          392 NVG  394 (424)
Q Consensus       392 ~~~  394 (424)
                      +.+
T Consensus       411 l~~  413 (490)
T KOG1259|consen  411 LAG  413 (490)
T ss_pred             ccc
Confidence            643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.82  E-value=1.1e-08  Score=104.74  Aligned_cols=102  Identities=24%  Similarity=0.315  Sum_probs=50.1

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++++.|++++|.++.+|... +.+|+.|++++|.++.+|...   ..+|+.|++++|.+..+|..+.  .+|++|++  +
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~L--s  270 (754)
T PRK15370        199 EQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITELPERLP--SALQSLDL--F  270 (754)
T ss_pred             cCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEEC--c
Confidence            34555555555555544321 235555555555555555431   1245555555555555554332  34555555  4


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccch
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPS  374 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~  374 (424)
                      ++.+..+|..+.  .+|+.|++++|.++.+|.
T Consensus       271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~  300 (754)
T PRK15370        271 HNKISCLPENLP--EELRYLSVYDNSIRTLPA  300 (754)
T ss_pred             CCccCccccccC--CCCcEEECCCCccccCcc
Confidence            455555554332  245555555555544443

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=98.81  E-value=9.6e-07  Score=79.85  Aligned_cols=150  Identities=14%  Similarity=0.181  Sum_probs=102.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      .-+.+||++|+||||||+-+....+...    ..||..+.......-++.++++-..              ...+.+++.
T Consensus       163 pSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~--------------~~~l~krkT  224 (554)
T KOG2028|consen  163 PSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN--------------EKSLTKRKT  224 (554)
T ss_pred             CceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH--------------HHhhhccee
Confidence            4578999999999999999999885332    5677776655444445555443221              123457899


Q ss_pred             EEEEcCCCCcch-hhhhccCCCCCCcEEEE--Eecchhhhc-----ccCceEEecCCCHHHHHHHHHHHhc---cc----
Q 037045           82 VLFLDGVSSEIN-FKEIGMHDDHGRGKVVF--ACRSREFCW-----QADGVIHVQQLCQREAKKLFWEVVG---VH----  146 (424)
Q Consensus        82 LlvlD~~~~~~~-~~~~~~~~~~~~~~iii--ttr~~~~~~-----~~~~~~~l~~l~~~~~~~l~~~~~~---~~----  146 (424)
                      +|.+|++..... .+...+|....|.-++|  ||.+..+..     ....++.++.|..++...++.+...   ..    
T Consensus       225 ilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~  304 (554)
T KOG2028|consen  225 ILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPT  304 (554)
T ss_pred             EEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccC
Confidence            999999987532 22224677777776666  776665544     8899999999999999999887442   11    


Q ss_pred             -CCCC---ccHHHHHHHHHHhcCCchH
Q 037045          147 -LKKY---PDIELVADSIVKECGGMPY  169 (424)
Q Consensus       147 -~~~~---~~~~~~~~~I~~~~~g~Pl  169 (424)
                       ..+.   ...+.+...++..|.|...
T Consensus       305 ~~l~n~s~~ve~siidyla~lsdGDaR  331 (554)
T KOG2028|consen  305 DPLPNSSMFVEDSIIDYLAYLSDGDAR  331 (554)
T ss_pred             CCCCCcchhhhHHHHHHHHHhcCchHH
Confidence             1111   2335567788888999763

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.79  E-value=9.4e-09  Score=104.74  Aligned_cols=79  Identities=20%  Similarity=0.174  Sum_probs=61.0

Q ss_pred             CCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeec
Q 037045          309 CHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVS  388 (424)
Q Consensus       309 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~  388 (424)
                      .+|+.|++++|.+..+|..   .++|+.|++  +++.+..+|...   .+|+.|++++|+++.+|..+.++++|+.++++
T Consensus       382 ~~L~~LdLs~N~Lt~LP~l---~s~L~~LdL--S~N~LssIP~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        382 SGLKELIVSGNRLTSLPVL---PSELKELMV--SGNRLTSLPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNLE  453 (788)
T ss_pred             cccceEEecCCcccCCCCc---ccCCCEEEc--cCCcCCCCCcch---hhhhhhhhccCcccccChHHhhccCCCeEECC
Confidence            3577777777777666643   356778888  777777777533   35778889999999999889999999999999


Q ss_pred             cccCCCC
Q 037045          389 RVENVGN  395 (424)
Q Consensus       389 ~n~~~~~  395 (424)
                      +|++.+.
T Consensus       454 ~N~Ls~~  460 (788)
T PRK15387        454 GNPLSER  460 (788)
T ss_pred             CCCCCch
Confidence            9988765

>PLN03210 Resistant to P

Probab=98.76  E-value=3.7e-08  Score=107.19  Aligned_cols=88  Identities=26%  Similarity=0.327  Sum_probs=50.2

Q ss_pred             CCcEEEccCCCC-CcCChhhhcccccceeeecccccccccCChhh--------------------hccCCCCEEEecCCc
Q 037045          310 HLQLLDLHETNI-GCLPPSISRLINLNALFLRSSCSLLLQLPAEI--------------------GRLQKLEILDVSHTK  368 (424)
Q Consensus       310 ~L~~L~l~~~~~-~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~--------------------~~l~~L~~L~l~~~~  368 (424)
                      +|+.|++++|.. ..+|..++.+++|+.|+++ .|+.+..+|..+                    ....+|+.|++++|.
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls-~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~  857 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE-NCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG  857 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECC-CCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCC
Confidence            444445544432 4455555555555555552 333344444322                    012356677777777


Q ss_pred             CcccchhhhcCCCCCEeeeccccCCCCccc
Q 037045          369 VQCLPSEIGQLIELKYLRVSRVENVGNHTH  398 (424)
Q Consensus       369 i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~  398 (424)
                      +..+|..+..+++|+.|++++|.....+|.
T Consensus       858 i~~iP~si~~l~~L~~L~L~~C~~L~~l~~  887 (1153)
T PLN03210        858 IEEVPWWIEKFSNLSFLDMNGCNNLQRVSL  887 (1153)
T ss_pred             CccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence            777887788888888888888765544444

syringae 6; Provisional

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.76  E-value=1.1e-09  Score=95.86  Aligned_cols=123  Identities=26%  Similarity=0.297  Sum_probs=104.9

Q ss_pred             ccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEe
Q 037045          285 CEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDV  364 (424)
Q Consensus       285 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l  364 (424)
                      ..|+.+++++|.++.+..+ ..-.|.+++|+++.|.+... .++..+++|+.|++  ++|.+.++-.+-.++.++++|.+
T Consensus       284 q~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v-~nLa~L~~L~~LDL--S~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTV-QNLAELPQLQLLDL--SGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchhhhhhh-hhhccceeEEeccccceeee-hhhhhcccceEeec--ccchhHhhhhhHhhhcCEeeeeh
Confidence            3488999999999988876 56678999999999988555 33778999999999  88988888776677888999999


Q ss_pred             cCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeec
Q 037045          365 SHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELII  423 (424)
Q Consensus       365 ~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  423 (424)
                      +.|.+.++ ++++.+=+|..|++++|.+.           .+..+..+|+|++|++|.+
T Consensus       360 a~N~iE~L-SGL~KLYSLvnLDl~~N~Ie-----------~ldeV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  360 AQNKIETL-SGLRKLYSLVNLDLSSNQIE-----------ELDEVNHIGNLPCLETLRL  406 (490)
T ss_pred             hhhhHhhh-hhhHhhhhheeccccccchh-----------hHHHhcccccccHHHHHhh
Confidence            99999888 57899999999999999754           6688889999999999876

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.76  E-value=9.6e-08  Score=84.78  Aligned_cols=148  Identities=14%  Similarity=0.139  Sum_probs=92.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +.+.|+|+.|+|||+||+.+++...  ......+++++..-.+..   ..+                    ...+.+ .-
T Consensus        39 ~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~~~~---~~~--------------------~~~~~~-~~   92 (226)
T TIGR03420        39 RFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELAQAD---PEV--------------------LEGLEQ-AD   92 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHHHhH---HHH--------------------Hhhccc-CC
Confidence            3588999999999999999999873  333456676654432100   011                    111222 23


Q ss_pred             EEEEcCCCCcc---h-hhhh-c-cC-CCCCCcEEEEEecchhh---------hc--ccCceEEecCCCHHHHHHHHHHHh
Q 037045           82 VLFLDGVSSEI---N-FKEI-G-MH-DDHGRGKVVFACRSREF---------CW--QADGVIHVQQLCQREAKKLFWEVV  143 (424)
Q Consensus        82 LlvlD~~~~~~---~-~~~~-~-~~-~~~~~~~iiittr~~~~---------~~--~~~~~~~l~~l~~~~~~~l~~~~~  143 (424)
                      +|||||++...   . .+.+ . +. ....+..+|+|++....         ..  .....+++.++++++...++....
T Consensus        93 lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~  172 (226)
T TIGR03420        93 LVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRA  172 (226)
T ss_pred             EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHH
Confidence            89999998753   2 2222 1 11 11234578888874321         11  224688999999999999998765


Q ss_pred             cccCCCCccHHHHHHHHHHhcCCchHHHHHHHHH
Q 037045          144 GVHLKKYPDIELVADSIVKECGGMPYMLKLIGKE  177 (424)
Q Consensus       144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~  177 (424)
                      ...  .....++..+.|++.+.|++..+..+...
T Consensus       173 ~~~--~~~~~~~~l~~L~~~~~gn~r~L~~~l~~  204 (226)
T TIGR03420       173 ARR--GLQLPDEVADYLLRHGSRDMGSLMALLDA  204 (226)
T ss_pred             HHc--CCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence            432  12333567788888999999877666543

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.74  E-value=1e-08  Score=104.90  Aligned_cols=119  Identities=25%  Similarity=0.356  Sum_probs=65.2

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++|+.|++++|.++.+|... +.+|+.|++++|+++.+|...   .++|+.|++++|.+..+|..+  .++|++|++  .
T Consensus       262 s~L~~L~Ls~N~L~~LP~~l-~~sL~~L~Ls~N~Lt~LP~~l---p~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~L--s  333 (754)
T PRK15370        262 SALQSLDLFHNKISCLPENL-PEELRYLSVYDNSIRTLPAHL---PSGITHLNVQSNSLTALPETL--PPGLKTLEA--G  333 (754)
T ss_pred             CCCCEEECcCCccCcccccc-CCCCcEEECCCCccccCcccc---hhhHHHHHhcCCccccCCccc--cccceeccc--c
Confidence            46777888887777765421 246777777777777666432   124555555555555454332  234555555  4


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV  393 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~  393 (424)
                      ++.+..+|..+.  ++|+.|++++|.++.+|..+.  ++|+.|++++|.+.
T Consensus       334 ~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt  380 (754)
T PRK15370        334 ENALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALT  380 (754)
T ss_pred             CCccccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCC
Confidence            444555554332  355555555555555554332  34555555555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.73  E-value=5.7e-09  Score=100.87  Aligned_cols=144  Identities=31%  Similarity=0.402  Sum_probs=107.6

Q ss_pred             ceeEEEeeccCCCCCC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          264 HTKRLSLFGFPSSTLP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       264 ~l~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      +++.|++++|.+..+| ....+++|+.|++++|.++.++.. ....+.|+.|++++|.+..+|.....+..|+++.+  .
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~--~  217 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDL--S  217 (394)
T ss_pred             hcccccccccchhhhhhhhhccccccccccCCchhhhhhhh-hhhhhhhhheeccCCccccCchhhhhhhhhhhhhh--c
Confidence            6788888888888775 567788888888888888887775 23567788888888888888776666777888887  6


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      ++.+...+..+..+.++..+.+.+|++..+|..++.++.|++|+++.|.+              ..+..++.+.+|+.|+
T Consensus       218 ~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i--------------~~i~~~~~~~~l~~L~  283 (394)
T COG4886         218 NNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQI--------------SSISSLGSLTNLRELD  283 (394)
T ss_pred             CCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccc--------------cccccccccCccCEEe
Confidence            66666667777777777777777777776666677888888888888753              3344477777777777


Q ss_pred             cC
Q 037045          423 IE  424 (424)
Q Consensus       423 l~  424 (424)
                      ++
T Consensus       284 ~s  285 (394)
T COG4886         284 LS  285 (394)
T ss_pred             cc
Confidence            64

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.73  E-value=9.3e-07  Score=85.93  Aligned_cols=201  Identities=13%  Similarity=0.085  Sum_probs=120.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      .+.|+|..|+|||+|++.+++.......-..+++++      .+++...+...++...      .....+.+.++. .-+
T Consensus       143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~~~~~~~~~~~-~dv  209 (450)
T PRK14087        143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KEIEQFKNEICQ-NDV  209 (450)
T ss_pred             ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hHHHHHHHHhcc-CCE
Confidence            478999999999999999999763222223455543      4566677766655311      122334443433 347


Q ss_pred             EEEcCCCCcc---h-hhhh--ccC-CCCCCcEEEEEecchh--hh---c------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045           83 LFLDGVSSEI---N-FKEI--GMH-DDHGRGKVVFACRSRE--FC---W------QADGVIHVQQLCQREAKKLFWEVVG  144 (424)
Q Consensus        83 lvlD~~~~~~---~-~~~~--~~~-~~~~~~~iiittr~~~--~~---~------~~~~~~~l~~l~~~~~~~l~~~~~~  144 (424)
                      ||+||++...   . .+.+  .+. ....+..||+|+....  ..   .      .....+.+++++.++..+++.+.+.
T Consensus       210 LiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~  289 (450)
T PRK14087        210 LIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIK  289 (450)
T ss_pred             EEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHH
Confidence            8899998653   1 2222  111 2334557888865321  11   1      5667888999999999999999886


Q ss_pred             ccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHh---------CCcchHHHHHHHHHhhhcCcccccchhhhhHHHhhh
Q 037045          145 VHLKKYPDIELVADSIVKECGGMPYMLKLIGKELA---------NQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLV  215 (424)
Q Consensus       145 ~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~s  215 (424)
                      .........++....|++.+.|.|..+..+...+.         ..-+.+..+.++.++.. .....-..+.|..++...
T Consensus       290 ~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~~-~~~~~~t~~~I~~~Va~~  368 (450)
T PRK14087        290 NQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIPT-SKLGILNVKKIKEVVSEK  368 (450)
T ss_pred             hcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhccc-cccCCCCHHHHHHHHHHH
Confidence            43211234477889999999999988876664431         11344555555554422 111112335666666555


Q ss_pred             hc
Q 037045          216 YK  217 (424)
Q Consensus       216 ~~  217 (424)
                      |+
T Consensus       369 ~~  370 (450)
T PRK14087        369 YG  370 (450)
T ss_pred             cC
Confidence            54

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.72  E-value=1.6e-06  Score=83.88  Aligned_cols=151  Identities=14%  Similarity=0.190  Sum_probs=89.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHH-hccCcE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKE-LNDRSY   81 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~~~~   81 (424)
                      -+.|+|++|+||||+|+.+++..  ...|     +.++......+-.+.+...                .... ..+++.
T Consensus        38 ~ilL~GppGtGKTtLA~~ia~~~--~~~~-----~~l~a~~~~~~~ir~ii~~----------------~~~~~~~g~~~   94 (413)
T PRK13342         38 SMILWGPPGTGKTTLARIIAGAT--DAPF-----EALSAVTSGVKDLREVIEE----------------ARQRRSAGRRT   94 (413)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh--CCCE-----EEEecccccHHHHHHHHHH----------------HHHhhhcCCce
Confidence            57889999999999999999977  3333     2222221111112222221                1111 135788


Q ss_pred             EEEEcCCCCcch--hhhhccCCCCCCcEEEE--Eecchhhh--c---ccCceEEecCCCHHHHHHHHHHHhcccCCCC-c
Q 037045           82 VLFLDGVSSEIN--FKEIGMHDDHGRGKVVF--ACRSREFC--W---QADGVIHVQQLCQREAKKLFWEVVGVHLKKY-P  151 (424)
Q Consensus        82 LlvlD~~~~~~~--~~~~~~~~~~~~~~iii--ttr~~~~~--~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~-~  151 (424)
                      +|++|+++....  .+.+ .+....+..++|  ||.+....  .   .....+.+.+++.++..+++.+.+....... .
T Consensus        95 vL~IDEi~~l~~~~q~~L-L~~le~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~  173 (413)
T PRK13342         95 ILFIDEIHRFNKAQQDAL-LPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVE  173 (413)
T ss_pred             EEEEechhhhCHHHHHHH-HHHhhcCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCC
Confidence            999999997642  2222 221223444444  33332211  1   5567899999999999999988764321111 3


Q ss_pred             cHHHHHHHHHHhcCCchHHHHHHHHH
Q 037045          152 DIELVADSIVKECGGMPYMLKLIGKE  177 (424)
Q Consensus       152 ~~~~~~~~I~~~~~g~Plai~~~a~~  177 (424)
                      ..++....|++.|+|.+..+.-+...
T Consensus       174 i~~~al~~l~~~s~Gd~R~aln~Le~  199 (413)
T PRK13342        174 LDDEALDALARLANGDARRALNLLEL  199 (413)
T ss_pred             CCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34567788999999999766544433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.72  E-value=2.5e-08  Score=101.63  Aligned_cols=142  Identities=25%  Similarity=0.198  Sum_probs=87.1

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++|+.|++++|.++.+|..  ..+|+.|++++|.++.+|..    ..+|++|++++|.+..+|..   ..+|..|++  .
T Consensus       302 ~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP~l----p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~L--s  370 (788)
T PRK15387        302 PGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPTL----PSGLQELSVSDNQLASLPTL---PSELYKLWA--Y  370 (788)
T ss_pred             cccceeECCCCccccCCCC--cccccccccccCcccccccc----ccccceEecCCCccCCCCCC---Ccccceehh--h
Confidence            6788888888888876643  23466677777777766641    24678888888877666642   245556666  5


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCccc----------CCCCCCCCcChhhh
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTH----------ADAGSGEMISLNII  412 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~----------~~~~~~~~~~~~~l  412 (424)
                      ++.+..+|...   .+|+.|++++|.++.+|..   .++|+.|++++|.+.+ +|.          ..+..+  ..+..+
T Consensus       371 ~N~L~~LP~l~---~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt--~LP~sl  441 (788)
T PRK15387        371 NNRLTSLPALP---SGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLT--RLPESL  441 (788)
T ss_pred             ccccccCcccc---cccceEEecCCcccCCCCc---ccCCCEEEccCCcCCC-CCcchhhhhhhhhccCccc--ccChHH
Confidence            66666666432   3566666666666666542   2456666666666543 222          011111  234567


Q ss_pred             hccccCceeecC
Q 037045          413 SKLRLLEELIIE  424 (424)
Q Consensus       413 ~~l~~L~~L~l~  424 (424)
                      +++++|+.|+|+
T Consensus       442 ~~L~~L~~LdLs  453 (788)
T PRK15387        442 IHLSSETTVNLE  453 (788)
T ss_pred             hhccCCCeEECC
Confidence            888999998875

>COG3903 Predicted ATPase [General function prediction only]

Probab=98.68  E-value=5.9e-08  Score=89.49  Aligned_cols=235  Identities=17%  Similarity=0.164  Sum_probs=159.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      |.+.++|.|||||||++-.+.. .. ..+-+++.++++.+-.+...+.-.+...++......  +.....+.....+++.
T Consensus        15 RlvtL~g~ggvgkttl~~~~a~-~~-~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~~rr~   90 (414)
T COG3903          15 RLVTLTGAGGVGKTTLALQAAH-AA-SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIGDRRA   90 (414)
T ss_pred             heeeeeccCccceehhhhhhHh-Hh-hhcccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHhhhhH
Confidence            6789999999999999999999 41 344477889999998888888888888887765110  1123345556678999


Q ss_pred             EEEEcCCCCcchhhhh---ccCCCCCCcEEEEEecchhhhcccCceEEecCCCHH-HHHHHHHHHhccc---CCCCccHH
Q 037045           82 VLFLDGVSSEINFKEI---GMHDDHGRGKVVFACRSREFCWQADGVIHVQQLCQR-EAKKLFWEVVGVH---LKKYPDIE  154 (424)
Q Consensus        82 LlvlD~~~~~~~~~~~---~~~~~~~~~~iiittr~~~~~~~~~~~~~l~~l~~~-~~~~l~~~~~~~~---~~~~~~~~  154 (424)
                      ++|+||.....+--.-   .+......-.++.|+|..... ..+....+..++.. ++.++|...+...   -.-.....
T Consensus        91 llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~-~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~  169 (414)
T COG3903          91 LLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV-AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNA  169 (414)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc-cccccccCCccccCCchhHHHHHHHHHhccceeecCCch
Confidence            9999998876431111   122334445677787776655 45556677777764 7888887666433   11122235


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHH---hhhcCcccccchhhhhHHHhhhhccCCcchHhHHhhhh
Q 037045          155 LVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADE---LRLTSSEEKKELEEVDRFFTLVYKNLSLEQQHCLLGWA  231 (424)
Q Consensus       155 ~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la  231 (424)
                      ....+|+++..|.|++|..++...++-...+.-...-+.   +......-........+.+..||.-|+.-.+-.|..++
T Consensus       170 a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~rLa  249 (414)
T COG3903         170 AAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGRLA  249 (414)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcchh
Confidence            567889999999999999999998886332222222222   22210000111156778899999999999999999999


Q ss_pred             hccCCCCCCh
Q 037045          232 IFSTGLELSQ  241 (424)
Q Consensus       232 ~fp~~~~i~~  241 (424)
                      .|...+..+.
T Consensus       250 ~~~g~f~~~l  259 (414)
T COG3903         250 VFVGGFDLGL  259 (414)
T ss_pred             hhhhhhcccH
Confidence            9988776553

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.65  E-value=5.4e-07  Score=80.13  Aligned_cols=149  Identities=9%  Similarity=0.080  Sum_probs=93.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +.+.|+|+.|+|||+|++.+++...  .....+.|+.+.....   ...                +    +.+.+.. --
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~---~~~----------------~----~~~~~~~-~d   99 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW---FVP----------------E----VLEGMEQ-LS   99 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh---hhH----------------H----HHHHhhh-CC
Confidence            4678999999999999999998873  3334567776643110   000                1    1111111 23


Q ss_pred             EEEEcCCCCcc---hhhhhccC----CCCCC-cEEEEEecchhhh-----c------ccCceEEecCCCHHHHHHHHHHH
Q 037045           82 VLFLDGVSSEI---NFKEIGMH----DDHGR-GKVVFACRSREFC-----W------QADGVIHVQQLCQREAKKLFWEV  142 (424)
Q Consensus        82 LlvlD~~~~~~---~~~~~~~~----~~~~~-~~iiittr~~~~~-----~------~~~~~~~l~~l~~~~~~~l~~~~  142 (424)
                      +|+|||++...   .|++..+.    ....+ .++|+||+.....     +      ....++++++++.++-.+++.+.
T Consensus       100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~  179 (235)
T PRK08084        100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR  179 (235)
T ss_pred             EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHH
Confidence            78999997642   33322111    12233 4799998854332     1      55589999999999999998876


Q ss_pred             hcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045          143 VGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKEL  178 (424)
Q Consensus       143 ~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l  178 (424)
                      +...  .-...++....|++.+.|....+..+...+
T Consensus       180 a~~~--~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l  213 (235)
T PRK08084        180 ARLR--GFELPEDVGRFLLKRLDREMRTLFMTLDQL  213 (235)
T ss_pred             HHHc--CCCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence            6432  223446678889999888776665554433

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.64  E-value=6.3e-07  Score=78.64  Aligned_cols=159  Identities=11%  Similarity=0.119  Sum_probs=98.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      ..+.|+|+.|+|||.|.+.+++.......-..++|++      .+++...+...+...        ....+.+.++ .-=
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~--------~~~~~~~~~~-~~D   99 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG--------EIEEFKDRLR-SAD   99 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT--------SHHHHHHHHC-TSS
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc--------cchhhhhhhh-cCC
Confidence            3578999999999999999999874322223466754      455566665555431        1233444444 334


Q ss_pred             EEEEcCCCCcch---hhhhccC----CCCCCcEEEEEecchhhh-c----------ccCceEEecCCCHHHHHHHHHHHh
Q 037045           82 VLFLDGVSSEIN---FKEIGMH----DDHGRGKVVFACRSREFC-W----------QADGVIHVQQLCQREAKKLFWEVV  143 (424)
Q Consensus        82 LlvlD~~~~~~~---~~~~~~~----~~~~~~~iiittr~~~~~-~----------~~~~~~~l~~l~~~~~~~l~~~~~  143 (424)
                      +|+|||++....   +++..+.    ....|.++|+|++..... .          .....+++++.+.++..+++.+.+
T Consensus       100 lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a  179 (219)
T PF00308_consen  100 LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKA  179 (219)
T ss_dssp             EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHH
T ss_pred             EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHH
Confidence            788999987643   2222111    234577899999543211 1          777789999999999999999888


Q ss_pred             cccCCCCccHHHHHHHHHHhcCCchHHHHHHHHH
Q 037045          144 GVHLKKYPDIELVADSIVKECGGMPYMLKLIGKE  177 (424)
Q Consensus       144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~  177 (424)
                      ...  .-...++++..|++.+.+....|..+...
T Consensus       180 ~~~--~~~l~~~v~~~l~~~~~~~~r~L~~~l~~  211 (219)
T PF00308_consen  180 KER--GIELPEEVIEYLARRFRRDVRELEGALNR  211 (219)
T ss_dssp             HHT--T--S-HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred             HHh--CCCCcHHHHHHHHHhhcCCHHHHHHHHHH
Confidence            654  22244667888888888777666555443

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PF14516 AAA_35: AAA-like domain

Probab=98.64  E-value=1.5e-05  Score=74.71  Aligned_cols=172  Identities=15%  Similarity=0.203  Sum_probs=104.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-----CCHHHHHH----HHHHHhcccc--------cccC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-----GNIRDIQE----IILERLKVNA--------KELN   64 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~----~i~~~l~~~~--------~~~~   64 (424)
                      +.+.|.|+-.+|||||...+.+...  ..-..++++++..-     .+.+.+++    .+..+++...        ...+
T Consensus        32 ~~~~I~apRq~GKTSll~~l~~~l~--~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~  109 (331)
T PF14516_consen   32 SYIRIKAPRQMGKTSLLLRLLERLQ--QQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS  109 (331)
T ss_pred             CEEEEECcccCCHHHHHHHHHHHHH--HCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence            3578999999999999999999885  22334668886652     34555554    4444444332        1112


Q ss_pred             hhHHHHHHHHHh-c--cCcEEEEEcCCCCcchh----hhh-cc-C---------CCCCCcEEE-EEe-cchhhhc-----
Q 037045           65 NDLRADIISKEL-N--DRSYVLFLDGVSSEINF----KEI-GM-H---------DDHGRGKVV-FAC-RSREFCW-----  119 (424)
Q Consensus        65 ~~~~~~~l~~~l-~--~~~~LlvlD~~~~~~~~----~~~-~~-~---------~~~~~~~ii-itt-r~~~~~~-----  119 (424)
                      .......+.+.+ .  +++.+|+||+++.....    +++ ++ .         +....-..+ +.+ +......     
T Consensus       110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SP  189 (331)
T PF14516_consen  110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSP  189 (331)
T ss_pred             hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCC
Confidence            222233444432 2  47999999999865321    112 10 0         111111222 221 1111111     


Q ss_pred             -ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 037045          120 -QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQ  181 (424)
Q Consensus       120 -~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~  181 (424)
                       .....+++++|+.+|..+|+.++-...      .+...++|...++|||..+..++..+...
T Consensus       190 FNIg~~i~L~~Ft~~ev~~L~~~~~~~~------~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~  246 (331)
T PF14516_consen  190 FNIGQPIELPDFTPEEVQELAQRYGLEF------SQEQLEQLMDWTGGHPYLVQKACYLLVEE  246 (331)
T ss_pred             cccccceeCCCCCHHHHHHHHHhhhccC------CHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence             445578899999999999988764321      13338889999999999999999999764

>PLN03150 hypothetical protein; Provisional

Probab=98.64  E-value=1.3e-07  Score=96.07  Aligned_cols=110  Identities=23%  Similarity=0.374  Sum_probs=90.6

Q ss_pred             ccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcCChhhhcccccceeeeccccccc-ccCChhhhccCCCCEEEe
Q 037045          287 ILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFLRSSCSLL-LQLPAEIGRLQKLEILDV  364 (424)
Q Consensus       287 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~l~l~~~~~~~-~~lp~~~~~l~~L~~L~l  364 (424)
                      ++.|++++|.+++..+..+..+++|+.|++++|.+ +.+|..++.+++|+.|++  ++|.+ +.+|..++.+++|+.|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdL--s~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL--SYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC--CCCCCCCCCchHHhcCCCCCEEEC
Confidence            77899999999865555588899999999999998 688888999999999999  55555 478999999999999999


Q ss_pred             cCCcCc-ccchhhhcC-CCCCEeeeccccCCCCccc
Q 037045          365 SHTKVQ-CLPSEIGQL-IELKYLRVSRVENVGNHTH  398 (424)
Q Consensus       365 ~~~~i~-~lp~~i~~l-~~L~~l~l~~n~~~~~~~~  398 (424)
                      ++|.++ .+|..++.+ .++..+++.+|...+..|.
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence            999977 888887654 4677889999876555443

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.63  E-value=1.6e-07  Score=80.38  Aligned_cols=147  Identities=16%  Similarity=0.217  Sum_probs=81.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -+.+|||+|+||||||.-+++..  ...|.   +++...-....++. .++.                    .+ +++.+
T Consensus        52 h~lf~GPPG~GKTTLA~IIA~e~--~~~~~---~~sg~~i~k~~dl~-~il~--------------------~l-~~~~I  104 (233)
T PF05496_consen   52 HMLFYGPPGLGKTTLARIIANEL--GVNFK---ITSGPAIEKAGDLA-AILT--------------------NL-KEGDI  104 (233)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHC--T--EE---EEECCC--SCHHHH-HHHH--------------------T---TT-E
T ss_pred             eEEEECCCccchhHHHHHHHhcc--CCCeE---eccchhhhhHHHHH-HHHH--------------------hc-CCCcE
Confidence            36789999999999999999998  44442   22221111111111 1111                    12 24557


Q ss_pred             EEEcCCCCcc---------hhhhhcc--C-CCCC-----------CcEEEEEecchhhhc----ccCceEEecCCCHHHH
Q 037045           83 LFLDGVSSEI---------NFKEIGM--H-DDHG-----------RGKVVFACRSREFCW----QADGVIHVQQLCQREA  135 (424)
Q Consensus        83 lvlD~~~~~~---------~~~~~~~--~-~~~~-----------~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~  135 (424)
                      |.+|+++...         .++...+  . ..+.           -+-|=-|||...+..    ......+++..+.+|-
T Consensus       105 LFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el  184 (233)
T PF05496_consen  105 LFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEEL  184 (233)
T ss_dssp             EEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHH
T ss_pred             EEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHH
Confidence            7789988752         1222211  0 1111           122335888766655    3334457999999999


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKEL  178 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l  178 (424)
                      .+++.+.+..-  .-...++.+.+|++.+.|-|.-..-+...+
T Consensus       185 ~~Iv~r~a~~l--~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv  225 (233)
T PF05496_consen  185 AKIVKRSARIL--NIEIDEDAAEEIARRSRGTPRIANRLLRRV  225 (233)
T ss_dssp             HHHHHHCCHCT--T-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            99998877543  345557789999999999996555444443

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK08727 hypothetical protein; Validated

Probab=98.63  E-value=6.2e-07  Score=79.64  Aligned_cols=141  Identities=13%  Similarity=0.052  Sum_probs=88.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      .+.|+|++|+|||+|++.+++...  .....+.|+.+..      ....+..                .+ +.+ .+.-+
T Consensus        43 ~l~l~G~~G~GKThL~~a~~~~~~--~~~~~~~y~~~~~------~~~~~~~----------------~~-~~l-~~~dl   96 (233)
T PRK08727         43 WLYLSGPAGTGKTHLALALCAAAE--QAGRSSAYLPLQA------AAGRLRD----------------AL-EAL-EGRSL   96 (233)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEeHHH------hhhhHHH----------------HH-HHH-hcCCE
Confidence            489999999999999999998874  3333566766432      1111111                11 111 12348


Q ss_pred             EEEcCCCCcc---hhhhhccC----CCCCCcEEEEEecchhhhc-----------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045           83 LFLDGVSSEI---NFKEIGMH----DDHGRGKVVFACRSREFCW-----------QADGVIHVQQLCQREAKKLFWEVVG  144 (424)
Q Consensus        83 lvlD~~~~~~---~~~~~~~~----~~~~~~~iiittr~~~~~~-----------~~~~~~~l~~l~~~~~~~l~~~~~~  144 (424)
                      ||+||++...   .++...+.    ....+..+|+|++......           .....+++++++.++-.+++.+.+.
T Consensus        97 LiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~  176 (233)
T PRK08727         97 VALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQ  176 (233)
T ss_pred             EEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHH
Confidence            9999998643   22222111    2234567999987422211           3467899999999999999998765


Q ss_pred             ccCCCCccHHHHHHHHHHhcCCchHHH
Q 037045          145 VHLKKYPDIELVADSIVKECGGMPYML  171 (424)
Q Consensus       145 ~~~~~~~~~~~~~~~I~~~~~g~Plai  171 (424)
                      ..  .-...++....|++.+.|....+
T Consensus       177 ~~--~l~l~~e~~~~La~~~~rd~r~~  201 (233)
T PRK08727        177 RR--GLALDEAAIDWLLTHGERELAGL  201 (233)
T ss_pred             Hc--CCCCCHHHHHHHHHhCCCCHHHH
Confidence            43  22334567788888888766554

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=98.62  E-value=3.7e-06  Score=84.36  Aligned_cols=154  Identities=14%  Similarity=0.125  Sum_probs=95.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCC-------------------CceEEEEEeccCCCHHHHHHHHHHHhccccccc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRR-------------------FDIIFWENINTDGNIRDIQEIILERLKVNAKEL   63 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~   63 (424)
                      .+.++|+.|+||||+|+.+++...-...                   |.-+++++.......+                 
T Consensus        40 AyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVD-----------------  102 (830)
T PRK07003         40 AYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVD-----------------  102 (830)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHH-----------------
Confidence            4568999999999999999987731111                   1112222222221111                 


Q ss_pred             ChhHHHHHHHHH----hccCcEEEEEcCCCCcch--hhhh-ccC-CCCCCcEEEEEecchhhhc----ccCceEEecCCC
Q 037045           64 NNDLRADIISKE----LNDRSYVLFLDGVSSEIN--FKEI-GMH-DDHGRGKVVFACRSREFCW----QADGVIHVQQLC  131 (424)
Q Consensus        64 ~~~~~~~~l~~~----l~~~~~LlvlD~~~~~~~--~~~~-~~~-~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~  131 (424)
                         +....+...    ..++.-++|||+++....  ++.+ ... ....+.++|++|++.....    +....+.+..++
T Consensus       103 ---dIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls  179 (830)
T PRK07003        103 ---EMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMP  179 (830)
T ss_pred             ---HHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcC
Confidence               111111111    123456899999998753  4444 111 2334677777777655444    778899999999


Q ss_pred             HHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch-HHHHHHHHHH
Q 037045          132 QREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP-YMLKLIGKEL  178 (424)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P-lai~~~a~~l  178 (424)
                      .++..+.+.+....+.  ....++....|++.++|.. .+++++-+.+
T Consensus       180 ~eeIv~~L~~Il~~Eg--I~id~eAL~lIA~~A~GsmRdALsLLdQAi  225 (830)
T PRK07003        180 AGHIVSHLERILGEER--IAFEPQALRLLARAAQGSMRDALSLTDQAI  225 (830)
T ss_pred             HHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999999998876542  2334567788999999866 4555544333

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.60  E-value=5.1e-08  Score=91.31  Aligned_cols=148  Identities=16%  Similarity=0.115  Sum_probs=104.1

Q ss_pred             cceeEEEeeccCCCC-C-CCCcCc---ccccEEEccCCCCCCCCh----HHhccc-CCCcEEEccCCCCC-----cCChh
Q 037045          263 AHTKRLSLFGFPSST-L-PDMPNC---CEILTLILEGKRLEKLPT----SFFDYM-CHLQLLDLHETNIG-----CLPPS  327 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~-~-~~~~~~---~~L~~L~l~~~~l~~~~~----~~~~~~-~~L~~L~l~~~~~~-----~~p~~  327 (424)
                      ++++.|+++++.+.. . +.+..+   ++|+.|++++|.++....    ..+..+ ++|+.|++++|.+.     .++..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            799999999999874 2 222333   459999999999884221    224455 88999999999884     23345


Q ss_pred             hhcccccceeeecccccccc-----cCChhhhccCCCCEEEecCCcCcc-----cchhhhcCCCCCEeeeccccCCCCcc
Q 037045          328 ISRLINLNALFLRSSCSLLL-----QLPAEIGRLQKLEILDVSHTKVQC-----LPSEIGQLIELKYLRVSRVENVGNHT  397 (424)
Q Consensus       328 ~~~l~~L~~l~l~~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~l~l~~n~~~~~~~  397 (424)
                      +..+.+|++|++  ..+.+.     .++..+..+++|+.|++++|.+..     ++..+.++++|++|++++|.+..   
T Consensus       161 ~~~~~~L~~L~l--~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~---  235 (319)
T cd00116         161 LRANRDLKELNL--ANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD---  235 (319)
T ss_pred             HHhCCCcCEEEC--cCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch---
Confidence            667788999999  666665     244456667899999999998762     33446678899999999997532   


Q ss_pred             cCCCCCCCCcChhhhhc-----cccCceeecC
Q 037045          398 HADAGSGEMISLNIISK-----LRLLEELIIE  424 (424)
Q Consensus       398 ~~~~~~~~~~~~~~l~~-----l~~L~~L~l~  424 (424)
                               ..+..+..     .++|++|+++
T Consensus       236 ---------~~~~~l~~~~~~~~~~L~~L~l~  258 (319)
T cd00116         236 ---------AGAAALASALLSPNISLLTLSLS  258 (319)
T ss_pred             ---------HHHHHHHHHHhccCCCceEEEcc
Confidence                     12223322     3788888874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.60  E-value=1.1e-07  Score=84.47  Aligned_cols=89  Identities=13%  Similarity=0.248  Sum_probs=60.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC--CCHHHHHHHHHHHhcccccccChh-------HHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD--GNIRDIQEIILERLKVNAKELNND-------LRADII   72 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~-------~~~~~l   72 (424)
                      ..++|.|++|+|||||++++++.... .+|+.++|+.+...  .++.++++.+...+-......+..       ......
T Consensus        17 qr~~I~G~~G~GKTTLlr~I~n~l~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a   95 (249)
T cd01128          17 QRGLIVAPPKAGKTTLLQSIANAITK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA   95 (249)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            35899999999999999999998863 38999999986665  789999999833322222111111       111122


Q ss_pred             HHH-hccCcEEEEEcCCCCc
Q 037045           73 SKE-LNDRSYVLFLDGVSSE   91 (424)
Q Consensus        73 ~~~-l~~~~~LlvlD~~~~~   91 (424)
                      ... -.++++++++|++...
T Consensus        96 ~~~~~~G~~vll~iDei~r~  115 (249)
T cd01128          96 KRLVEHGKDVVILLDSITRL  115 (249)
T ss_pred             HHHHHCCCCEEEEEECHHHh
Confidence            221 2368999999998764

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=6.4e-09  Score=95.69  Aligned_cols=148  Identities=24%  Similarity=0.219  Sum_probs=114.2

Q ss_pred             cceeEEEeeccCCCCCCC-C--cCcccccEEEccCCCCC-CCChHHhcccCCCcEEEccCCC-CCcCChhhhccccccee
Q 037045          263 AHTKRLSLFGFPSSTLPD-M--PNCCEILTLILEGKRLE-KLPTSFFDYMCHLQLLDLHETN-IGCLPPSISRLINLNAL  337 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~-~--~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~-~~~~p~~~~~l~~L~~l  337 (424)
                      ++|+.|+++.|.+..+-+ .  ..++.|+.|.++.|.++ .....+...+|+|..|.+.+|. +........-+..|+.|
T Consensus       172 p~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~L  251 (505)
T KOG3207|consen  172 PSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQEL  251 (505)
T ss_pred             ccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhc
Confidence            899999999999887432 2  67889999999999998 3334446678999999999994 32222234457889999


Q ss_pred             eecccccccccCC--hhhhccCCCCEEEecCCcCcc--cchh-----hhcCCCCCEeeeccccCCCCcccCCCCCCCCcC
Q 037045          338 FLRSSCSLLLQLP--AEIGRLQKLEILDVSHTKVQC--LPSE-----IGQLIELKYLRVSRVENVGNHTHADAGSGEMIS  408 (424)
Q Consensus       338 ~l~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~--lp~~-----i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~  408 (424)
                      ++  +++.+-..+  ...+.++.|..|+++.|++.+  +|+.     ...+++|++|+++.|++.           .|.+
T Consensus       252 dL--s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-----------~w~s  318 (505)
T KOG3207|consen  252 DL--SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-----------DWRS  318 (505)
T ss_pred             cc--cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-----------cccc
Confidence            99  777776666  568889999999999999874  4554     357889999999999753           6778


Q ss_pred             hhhhhccccCceeec
Q 037045          409 LNIISKLRLLEELII  423 (424)
Q Consensus       409 ~~~l~~l~~L~~L~l  423 (424)
                      +..+-.+.+|+.|.+
T Consensus       319 l~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  319 LNHLRTLENLKHLRI  333 (505)
T ss_pred             cchhhccchhhhhhc
Confidence            888888888887764

>PRK09087 hypothetical protein; Validated

Probab=98.60  E-value=5.8e-07  Score=79.18  Aligned_cols=137  Identities=10%  Similarity=0.112  Sum_probs=88.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      .+.|+|++|+|||+|++.+++...       ..|++..      .+..++...+.                    +  -+
T Consensus        46 ~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~~~--------------------~--~~   90 (226)
T PRK09087         46 VVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANAAA--------------------E--GP   90 (226)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHhhh--------------------c--Ce
Confidence            589999999999999999887652       1243322      22222222111                    1  27


Q ss_pred             EEEcCCCCcc-hhhhh--ccC-CCCCCcEEEEEecch---------hhhc--ccCceEEecCCCHHHHHHHHHHHhcccC
Q 037045           83 LFLDGVSSEI-NFKEI--GMH-DDHGRGKVVFACRSR---------EFCW--QADGVIHVQQLCQREAKKLFWEVVGVHL  147 (424)
Q Consensus        83 lvlD~~~~~~-~~~~~--~~~-~~~~~~~iiittr~~---------~~~~--~~~~~~~l~~l~~~~~~~l~~~~~~~~~  147 (424)
                      |++||++... +-+.+  -+. ....|..+|+|++..         +...  .....+++++++.++-.+++++.+... 
T Consensus        91 l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~-  169 (226)
T PRK09087         91 VLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR-  169 (226)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc-
Confidence            8889997542 11222  111 334567899988731         1111  666899999999999999999888653 


Q ss_pred             CCCccHHHHHHHHHHhcCCchHHHHHHHH
Q 037045          148 KKYPDIELVADSIVKECGGMPYMLKLIGK  176 (424)
Q Consensus       148 ~~~~~~~~~~~~I~~~~~g~Plai~~~a~  176 (424)
                       .-...++....|++.+.|....+..+..
T Consensus       170 -~~~l~~ev~~~La~~~~r~~~~l~~~l~  197 (226)
T PRK09087        170 -QLYVDPHVVYYLVSRMERSLFAAQTIVD  197 (226)
T ss_pred             -CCCCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence             2234466788899988888777665443

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.59  E-value=4.9e-06  Score=84.25  Aligned_cols=142  Identities=15%  Similarity=0.122  Sum_probs=88.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhcc---CCCCc--eEEEEEeccCCCHHHHHHHHHHHhcccc--cccChhHHHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGE---SRRFD--IIFWENINTDGNIRDIQEIILERLKVNA--KELNNDLRADIISKE   75 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~---~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~~~   75 (424)
                      ++.|+|++|+|||+.++.|++....   .....  .+++|++....++..++..|++++....  ......+....+...
T Consensus       783 vLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~  862 (1164)
T PTZ00112        783 ILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQ  862 (1164)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhh
Confidence            5679999999999999999987642   11222  3678888887888999999999885433  222223334444444


Q ss_pred             hcc---CcEEEEEcCCCCcch-----hhhhccC-CCCCCcEEEE--Eecchhhh----c-----ccCceEEecCCCHHHH
Q 037045           76 LND---RSYVLFLDGVSSEIN-----FKEIGMH-DDHGRGKVVF--ACRSREFC----W-----QADGVIHVQQLCQREA  135 (424)
Q Consensus        76 l~~---~~~LlvlD~~~~~~~-----~~~~~~~-~~~~~~~iii--ttr~~~~~----~-----~~~~~~~l~~l~~~~~  135 (424)
                      +..   ...+||||+++....     +-.+ +. ....++++++  ++...+..    +     .....+.+++++.++.
T Consensus       863 L~k~~r~v~IIILDEID~L~kK~QDVLYnL-FR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL  941 (1164)
T PTZ00112        863 NKKDNRNVSILIIDEIDYLITKTQKVLFTL-FDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEI  941 (1164)
T ss_pred             hhcccccceEEEeehHhhhCccHHHHHHHH-HHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHH
Confidence            321   246999999986531     2111 11 2233455443  33221111    1     2233477799999999


Q ss_pred             HHHHHHHhcc
Q 037045          136 KKLFWEVVGV  145 (424)
Q Consensus       136 ~~l~~~~~~~  145 (424)
                      .+++..++..
T Consensus       942 ~dILk~RAe~  951 (1164)
T PTZ00112        942 EKIIKERLEN  951 (1164)
T ss_pred             HHHHHHHHHh
Confidence            9999998864

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=2.2e-08  Score=92.23  Aligned_cols=125  Identities=26%  Similarity=0.249  Sum_probs=84.7

Q ss_pred             cceeEEEeeccCCCC--CC-CCcCcccccEEEccCCC-CC--CCChHHhcccCCCcEEEccCCCCCcCC--hhhhccccc
Q 037045          263 AHTKRLSLFGFPSST--LP-DMPNCCEILTLILEGKR-LE--KLPTSFFDYMCHLQLLDLHETNIGCLP--PSISRLINL  334 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~--~~-~~~~~~~L~~L~l~~~~-l~--~~~~~~~~~~~~L~~L~l~~~~~~~~p--~~~~~l~~L  334 (424)
                      ++++.|.++.|.++.  +. -...|++|..|++..|. +.  ..+   ...+..|+.||+++|.+-+++  +..+.++.|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L  273 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS---TKILQTLQELDLSNNNLIDFDQGYKVGTLPGL  273 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch---hhhhhHHhhccccCCcccccccccccccccch
Confidence            778888888888775  22 22678888888888774 22  122   233567888888888775544  567788888


Q ss_pred             ceeeecccccccccC--Chh-----hhccCCCCEEEecCCcCcccch--hhhcCCCCCEeeeccccC
Q 037045          335 NALFLRSSCSLLLQL--PAE-----IGRLQKLEILDVSHTKVQCLPS--EIGQLIELKYLRVSRVEN  392 (424)
Q Consensus       335 ~~l~l~~~~~~~~~l--p~~-----~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~l~l~~n~~  392 (424)
                      +-|++  +.+.+.++  |+.     ...+++|+.|++..|+++..++  .+..+++|++|.+..|.+
T Consensus       274 ~~Lnl--s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  274 NQLNL--SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             hhhhc--cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            88888  67776654  332     3456788888888888764443  366677777777777654

>PRK05642 DNA replication initiation factor; Validated

Probab=98.57  E-value=1.1e-06  Score=78.17  Aligned_cols=148  Identities=13%  Similarity=0.150  Sum_probs=92.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      .+.|+|+.|+|||.|++.+++...  ..-..++|++...      +...                 ...+.+.+.+-. +
T Consensus        47 ~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~~d-~  100 (234)
T PRK05642         47 LIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLAE------LLDR-----------------GPELLDNLEQYE-L  100 (234)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHHH------HHhh-----------------hHHHHHhhhhCC-E
Confidence            578999999999999999998773  2234577776432      2211                 011222233333 6


Q ss_pred             EEEcCCCCc---chhhhhccC----CCCCCcEEEEEecchhhhc-----------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045           83 LFLDGVSSE---INFKEIGMH----DDHGRGKVVFACRSREFCW-----------QADGVIHVQQLCQREAKKLFWEVVG  144 (424)
Q Consensus        83 lvlD~~~~~---~~~~~~~~~----~~~~~~~iiittr~~~~~~-----------~~~~~~~l~~l~~~~~~~l~~~~~~  144 (424)
                      ||+||++..   ..|++..+.    ....+..+|+|++......           .....+++++++.++-.++++..+.
T Consensus       101 LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~  180 (234)
T PRK05642        101 VCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS  180 (234)
T ss_pred             EEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence            788999743   233332121    2345677888887433221           3347788999999999999986554


Q ss_pred             ccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045          145 VHLKKYPDIELVADSIVKECGGMPYMLKLIGKEL  178 (424)
Q Consensus       145 ~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l  178 (424)
                      ..  .-...++....|++.+.|....+..+...|
T Consensus       181 ~~--~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l  212 (234)
T PRK05642        181 RR--GLHLTDEVGHFILTRGTRSMSALFDLLERL  212 (234)
T ss_pred             Hc--CCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            32  122335677888888888776665544433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.56  E-value=5e-08  Score=94.29  Aligned_cols=146  Identities=29%  Similarity=0.329  Sum_probs=119.6

Q ss_pred             cceeEEEeeccCCCCCCCCcCcc--cccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeec
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCC--EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLR  340 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~  340 (424)
                      +.++.|++.++.+..++......  +|+.|++++|.+..++.. +..++.|+.|+++.|.+..+|...+.+++|+.+++ 
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l-  193 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL-  193 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheec-
Confidence            57899999999999987764443  899999999999988644 67889999999999999888887778899999999 


Q ss_pred             ccccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCce
Q 037045          341 SSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEE  420 (424)
Q Consensus       341 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  420 (424)
                       +.+.+..+|.....+..|..+.+++|.+...|..+.+++++..+.+..|.+.             ..+..++.+++|++
T Consensus       194 -s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-------------~~~~~~~~l~~l~~  259 (394)
T COG4886         194 -SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-------------DLPESIGNLSNLET  259 (394)
T ss_pred             -cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-------------eccchhccccccce
Confidence             8999999998777777799999999976666667888888988888887532             22567788888888


Q ss_pred             eecC
Q 037045          421 LIIE  424 (424)
Q Consensus       421 L~l~  424 (424)
                      |+++
T Consensus       260 L~~s  263 (394)
T COG4886         260 LDLS  263 (394)
T ss_pred             eccc
Confidence            8764

>PRK04195 replication factor C large subunit; Provisional

Probab=98.55  E-value=6.2e-06  Score=81.47  Aligned_cols=157  Identities=16%  Similarity=0.168  Sum_probs=93.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +.+.|+|++|+||||+|+.+++...    ++ ++-++.+...+.. ....+........             ..+..++-
T Consensus        40 ~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~~i~~~~~~~-------------sl~~~~~k  100 (482)
T PRK04195         40 KALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIERVAGEAATSG-------------SLFGARRK  100 (482)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHHHHHHhhccC-------------cccCCCCe
Confidence            4688999999999999999999872    22 2333444333222 2222222211110             01113577


Q ss_pred             EEEEcCCCCcch------hhhhccCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHHHHHHHhcccCCCC
Q 037045           82 VLFLDGVSSEIN------FKEIGMHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKKLFWEVVGVHLKKY  150 (424)
Q Consensus        82 LlvlD~~~~~~~------~~~~~~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~  150 (424)
                      +||||+++....      ++.+.-.....++.+|+++.......     .....+++.+++.++....+.+.+....  .
T Consensus       101 vIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~eg--i  178 (482)
T PRK04195        101 LILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEG--I  178 (482)
T ss_pred             EEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcC--C
Confidence            999999987532      33331011234455666664322111     5567899999999999999988775542  1


Q ss_pred             ccHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 037045          151 PDIELVADSIVKECGGMPYMLKLIGKELA  179 (424)
Q Consensus       151 ~~~~~~~~~I~~~~~g~Plai~~~a~~l~  179 (424)
                      ....+....|++.++|....+......+.
T Consensus       179 ~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a  207 (482)
T PRK04195        179 ECDDEALKEIAERSGGDLRSAINDLQAIA  207 (482)
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence            22356788999999998766554444433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.54  E-value=5.4e-08  Score=91.17  Aligned_cols=152  Identities=21%  Similarity=0.237  Sum_probs=108.1

Q ss_pred             cceeEEEeeccCCCC--CC----CCcCc-ccccEEEccCCCCCCCC----hHHhcccCCCcEEEccCCCCCc-----CCh
Q 037045          263 AHTKRLSLFGFPSST--LP----DMPNC-CEILTLILEGKRLEKLP----TSFFDYMCHLQLLDLHETNIGC-----LPP  326 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~--~~----~~~~~-~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~-----~p~  326 (424)
                      ++++.|++++|.+..  .+    .+..+ ++|+.|++++|.++...    ...+..+++|+.|++++|.+..     ++.
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  187 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE  187 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence            569999999999874  11    22455 89999999999998421    2235567789999999998842     334


Q ss_pred             hhhcccccceeeeccccccccc-----CChhhhccCCCCEEEecCCcCccc-chhhh-c----CCCCCEeeeccccCCCC
Q 037045          327 SISRLINLNALFLRSSCSLLLQ-----LPAEIGRLQKLEILDVSHTKVQCL-PSEIG-Q----LIELKYLRVSRVENVGN  395 (424)
Q Consensus       327 ~~~~l~~L~~l~l~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~-~----l~~L~~l~l~~n~~~~~  395 (424)
                      .+..+++|+.|++  +++.+..     ++..+..+++|+.|++++|.++.. +..+. .    .+.|++|++++|.+...
T Consensus       188 ~l~~~~~L~~L~L--~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~  265 (319)
T cd00116         188 GLKANCNLEVLDL--NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD  265 (319)
T ss_pred             HHHhCCCCCEEec--cCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcH
Confidence            4556679999999  6666642     344566789999999999987742 12222 2    37899999999975411


Q ss_pred             cccCCCCCCCCcChhhhhccccCceeecC
Q 037045          396 HTHADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       396 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                              +.......+..+++|++|+++
T Consensus       266 --------~~~~l~~~~~~~~~L~~l~l~  286 (319)
T cd00116         266 --------GAKDLAEVLAEKESLLELDLR  286 (319)
T ss_pred             --------HHHHHHHHHhcCCCccEEECC
Confidence                    122345567778899999875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.54  E-value=1.6e-08  Score=92.05  Aligned_cols=127  Identities=20%  Similarity=0.248  Sum_probs=98.3

Q ss_pred             cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccC-CCCCcCCh-hhhcccccceee
Q 037045          263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHE-TNIGCLPP-SISRLINLNALF  338 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~-~~~~~~p~-~~~~l~~L~~l~  338 (424)
                      ++...+++..|.++.+|+  +..+++|++|++++|.++.+.+..|..++++..|-+.+ |++..+|. .|++|..|+.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            566778888888888764  47788888888888888888887788887766665555 78888874 578888888888


Q ss_pred             ecccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeecccc
Q 037045          339 LRSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVE  391 (424)
Q Consensus       339 l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~  391 (424)
                      +  .-+++..+++ .+..+++|..|.+..|.+.+++.+ +..+.+++++.+-.|.
T Consensus       147 l--Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  147 L--NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             c--ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            8  7777776654 577888888888888888888774 7777788888777766

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.53  E-value=4.8e-06  Score=79.14  Aligned_cols=93  Identities=12%  Similarity=0.032  Sum_probs=61.5

Q ss_pred             cCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045           78 DRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK  149 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~  149 (424)
                      ++.-++|+|+++....  ++.+  .+-......++|++|.+.. +..   +....+++.+++.++..+.+.+.+....  
T Consensus       118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g--  195 (363)
T PRK14961        118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES--  195 (363)
T ss_pred             CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--
Confidence            3456999999998753  3334  1112234556666665433 322   5568899999999999999988775541  


Q ss_pred             CccHHHHHHHHHHhcCCchHHHH
Q 037045          150 YPDIELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       150 ~~~~~~~~~~I~~~~~g~Plai~  172 (424)
                      ....++.+..|++.++|.|..+.
T Consensus       196 ~~i~~~al~~ia~~s~G~~R~al  218 (363)
T PRK14961        196 IDTDEYALKLIAYHAHGSMRDAL  218 (363)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHH
Confidence            22335577889999999885443

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=8.9e-06  Score=76.67  Aligned_cols=142  Identities=18%  Similarity=0.171  Sum_probs=101.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc-cccChhHHHHHHHHHhcc--Cc
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA-KELNNDLRADIISKELND--RS   80 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~--~~   80 (424)
                      +.|+|..|+|||+.++.+++.......-..+++|++....++.+++..|+++++... .+....+..+.+.+.+..  +.
T Consensus        45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~  124 (366)
T COG1474          45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKT  124 (366)
T ss_pred             EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCe
Confidence            689999999999999999999854222222899999999999999999999997444 566777777888887754  68


Q ss_pred             EEEEEcCCCCcchh-----hhh-ccCCCCCCcEEE--EEecchhhhc---------ccCceEEecCCCHHHHHHHHHHHh
Q 037045           81 YVLFLDGVSSEINF-----KEI-GMHDDHGRGKVV--FACRSREFCW---------QADGVIHVQQLCQREAKKLFWEVV  143 (424)
Q Consensus        81 ~LlvlD~~~~~~~~-----~~~-~~~~~~~~~~ii--ittr~~~~~~---------~~~~~~~l~~l~~~~~~~l~~~~~  143 (424)
                      +++|+|+++....-     -.+ ..+... .++|+  ..+....+..         -....+.+.+-+.+|-.+.+..++
T Consensus       125 ~IvvLDEid~L~~~~~~~LY~L~r~~~~~-~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~  203 (366)
T COG1474         125 VIVILDEVDALVDKDGEVLYSLLRAPGEN-KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERV  203 (366)
T ss_pred             EEEEEcchhhhccccchHHHHHHhhcccc-ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHH
Confidence            99999999875432     233 222222 34333  2333322211         344458899999999999999888


Q ss_pred             ccc
Q 037045          144 GVH  146 (424)
Q Consensus       144 ~~~  146 (424)
                      ...
T Consensus       204 ~~~  206 (366)
T COG1474         204 EEG  206 (366)
T ss_pred             Hhh
Confidence            643

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.51  E-value=2.9e-06  Score=76.17  Aligned_cols=168  Identities=14%  Similarity=0.075  Sum_probs=108.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCc----eEEEEEeccCCCHHHHHHHHHHHhcccc-cccChhHHHHHHHHH
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFD----IIFWENINTDGNIRDIQEIILERLKVNA-KELNNDLRADIISKE   75 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~   75 (424)
                      |+-+.|+|.+|.|||+++++++........-+    .|+.|......+...+...|+.+++.+. ...............
T Consensus        61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l  140 (302)
T PF05621_consen   61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL  140 (302)
T ss_pred             CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence            34578999999999999999998775422222    3788889999999999999999999888 445555555556666


Q ss_pred             hccC-cEEEEEcCCCCcc---------hhhhhccC-CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHHH
Q 037045           76 LNDR-SYVLFLDGVSSEI---------NFKEIGMH-DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAKK  137 (424)
Q Consensus        76 l~~~-~~LlvlD~~~~~~---------~~~~~~~~-~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~~  137 (424)
                      ++.- --+||||++++..         .++.+.+. ..-.=+-|.+-|+....+-       ..+..+.+.....++-..
T Consensus       141 lr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~  220 (302)
T PF05621_consen  141 LRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFR  220 (302)
T ss_pred             HHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHH
Confidence            7664 4599999998741         12222111 2222234445555432222       556677777766644333


Q ss_pred             HHHHHhccc----CCCCccHHHHHHHHHHhcCCch
Q 037045          138 LFWEVVGVH----LKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       138 l~~~~~~~~----~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      -|-......    ....-...+.++.|...++|..
T Consensus       221 ~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i  255 (302)
T PF05621_consen  221 RLLASFERALPLRKPSNLASPELARRIHERSEGLI  255 (302)
T ss_pred             HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence            332333221    2233344678899999999976

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=98.45  E-value=8.9e-06  Score=69.86  Aligned_cols=143  Identities=14%  Similarity=0.136  Sum_probs=84.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccC--------------------CCCceEEEEEecc-CCCHHHHHHHHHHHhcccc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGES--------------------RRFDIIFWENINT-DGNIRDIQEIILERLKVNA   60 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~--------------------~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~   60 (424)
                      ..+.++|+.|+|||++|+.+.+...-.                    .+.|. .++.... ....+. .+++...+... 
T Consensus        15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~-i~~i~~~~~~~-   91 (188)
T TIGR00678        15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ-VRELVEFLSRT-   91 (188)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH-HHHHHHHHccC-
Confidence            357899999999999999999887422                    11121 2222111 111111 11222221100 


Q ss_pred             cccChhHHHHHHHHHhccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecch-hhhc---ccCceEEecCCCH
Q 037045           61 KELNNDLRADIISKELNDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSR-EFCW---QADGVIHVQQLCQ  132 (424)
Q Consensus        61 ~~~~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~-~~~~---~~~~~~~l~~l~~  132 (424)
                                    -..+.+-++|+|+++....  .+.+  .+......+.+|++|++. .+..   .....+++.+++.
T Consensus        92 --------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~  157 (188)
T TIGR00678        92 --------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSE  157 (188)
T ss_pred             --------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCH
Confidence                          0124566899999987642  3333  112223345566666543 2222   5667999999999


Q ss_pred             HHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchH
Q 037045          133 REAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPY  169 (424)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Pl  169 (424)
                      ++..+.+.+. +       ..++.+..|++.++|.|.
T Consensus       158 ~~~~~~l~~~-g-------i~~~~~~~i~~~~~g~~r  186 (188)
T TIGR00678       158 EALLQWLIRQ-G-------ISEEAAELLLALAGGSPG  186 (188)
T ss_pred             HHHHHHHHHc-C-------CCHHHHHHHHHHcCCCcc
Confidence            9999888776 1       114578899999999885

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PLN03150 hypothetical protein; Provisional

Probab=98.45  E-value=5.2e-07  Score=91.73  Aligned_cols=86  Identities=28%  Similarity=0.502  Sum_probs=78.3

Q ss_pred             CcEEEccCCCC-CcCChhhhcccccceeeeccccccc-ccCChhhhccCCCCEEEecCCcCc-ccchhhhcCCCCCEeee
Q 037045          311 LQLLDLHETNI-GCLPPSISRLINLNALFLRSSCSLL-LQLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLIELKYLRV  387 (424)
Q Consensus       311 L~~L~l~~~~~-~~~p~~~~~l~~L~~l~l~~~~~~~-~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~l~l  387 (424)
                      ++.|++++|.+ +.+|..++.+++|+.|++  +.+.+ +.+|..++.+++|+.|++++|.++ .+|..++++++|++|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~L--s~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINL--SGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEEC--CCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            77899999998 788999999999999999  66665 589999999999999999999988 78988999999999999


Q ss_pred             ccccCCCCccc
Q 037045          388 SRVENVGNHTH  398 (424)
Q Consensus       388 ~~n~~~~~~~~  398 (424)
                      ++|.+.|.+|.
T Consensus       498 s~N~l~g~iP~  508 (623)
T PLN03150        498 NGNSLSGRVPA  508 (623)
T ss_pred             cCCcccccCCh
Confidence            99999988876

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.44  E-value=3.1e-06  Score=75.08  Aligned_cols=145  Identities=10%  Similarity=0.053  Sum_probs=87.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +.+.|+|+.|+|||+||+.+++...  ..-..+.+++......      .+                     .. ....-
T Consensus        43 ~~~~l~G~~G~GKT~La~ai~~~~~--~~~~~~~~i~~~~~~~------~~---------------------~~-~~~~~   92 (227)
T PRK08903         43 RFFYLWGEAGSGRSHLLQALVADAS--YGGRNARYLDAASPLL------AF---------------------DF-DPEAE   92 (227)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEEehHHhHH------HH---------------------hh-cccCC
Confidence            3588999999999999999999763  2222355665433210      00                     01 12334


Q ss_pred             EEEEcCCCCcchhh--hh--ccC-CCCCCc-EEEEEecchhhhc----------ccCceEEecCCCHHHHHHHHHHHhcc
Q 037045           82 VLFLDGVSSEINFK--EI--GMH-DDHGRG-KVVFACRSREFCW----------QADGVIHVQQLCQREAKKLFWEVVGV  145 (424)
Q Consensus        82 LlvlD~~~~~~~~~--~~--~~~-~~~~~~-~iiittr~~~~~~----------~~~~~~~l~~l~~~~~~~l~~~~~~~  145 (424)
                      ++|+||++......  .+  .+. ....+. .+|+|++......          .....+++.++++++-..++.+....
T Consensus        93 ~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~  172 (227)
T PRK08903         93 LYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAE  172 (227)
T ss_pred             EEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHH
Confidence            78899998653211  22  111 112333 4666665422111          22478899999998877777765432


Q ss_pred             cCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045          146 HLKKYPDIELVADSIVKECGGMPYMLKLIGKEL  178 (424)
Q Consensus       146 ~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l  178 (424)
                      .  .....++....+++.+.|++..+..+...+
T Consensus       173 ~--~v~l~~~al~~L~~~~~gn~~~l~~~l~~l  203 (227)
T PRK08903        173 R--GLQLADEVPDYLLTHFRRDMPSLMALLDAL  203 (227)
T ss_pred             c--CCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            2  123335677888889999998877666554

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.43  E-value=1.2e-05  Score=77.77  Aligned_cols=196  Identities=12%  Similarity=0.148  Sum_probs=112.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      .+.|+|+.|+|||+|++.+++.......--.++|++.      .++...+...+...    .    ...+.+.+++ .-+
T Consensus       138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~----~----~~~~~~~~~~-~dl  202 (405)
T TIGR00362       138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN----K----MEEFKEKYRS-VDL  202 (405)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC----C----HHHHHHHHHh-CCE
Confidence            4789999999999999999998742211234666643      33444444444321    1    2223333333 338


Q ss_pred             EEEcCCCCcch----hhhh--ccC-CCCCCcEEEEEecchh--hh---c------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045           83 LFLDGVSSEIN----FKEI--GMH-DDHGRGKVVFACRSRE--FC---W------QADGVIHVQQLCQREAKKLFWEVVG  144 (424)
Q Consensus        83 lvlD~~~~~~~----~~~~--~~~-~~~~~~~iiittr~~~--~~---~------~~~~~~~l~~l~~~~~~~l~~~~~~  144 (424)
                      |+|||++....    .+.+  .+. ....+..+|+|+....  ..   .      .....+++++.+.++-.+++.+.+.
T Consensus       203 LiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~  282 (405)
T TIGR00362       203 LLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAE  282 (405)
T ss_pred             EEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence            88999986421    1112  111 1234566888876421  11   1      3345789999999999999998886


Q ss_pred             ccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHh-------CCcchHHHHHHHHHhhhcCcccccchhhhhHHHhhhh
Q 037045          145 VHLKKYPDIELVADSIVKECGGMPYMLKLIGKELA-------NQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVY  216 (424)
Q Consensus       145 ~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~s~  216 (424)
                      ..  .....++....|++.+.|....+.-+...+.       ..-+.+..++.+..... .....-+.+.|..++...|
T Consensus       283 ~~--~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~~~-~~~~~it~~~I~~~Va~~~  358 (405)
T TIGR00362       283 EE--GLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLR-AKKKEITIENIQEVVAKYY  358 (405)
T ss_pred             Hc--CCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCHHHHHHHHHHHc
Confidence            54  2233367788899999998876554332221       12344556666554422 1111223355555555444

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.43  E-value=8.2e-06  Score=83.51  Aligned_cols=154  Identities=14%  Similarity=0.147  Sum_probs=91.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCC-------------------CceEEEEEeccCCCHHHHHHHHHHHhccccccc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRR-------------------FDIIFWENINTDGNIRDIQEIILERLKVNAKEL   63 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~   63 (424)
                      .+.++|+.|+||||+|+.+++...-...                   |.-+++++......++.+ +.+...+.      
T Consensus        40 AyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdI-ReLie~v~------  112 (944)
T PRK14949         40 AYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDT-RELLDNVQ------  112 (944)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHH-HHHHHHHH------
Confidence            3578999999999999999988742111                   111122221111112211 22222111      


Q ss_pred             ChhHHHHHHHHHhccCcEEEEEcCCCCcc--hhhhh-ccC-CCCCCcEEEEEecc-hhhhc---ccCceEEecCCCHHHH
Q 037045           64 NNDLRADIISKELNDRSYVLFLDGVSSEI--NFKEI-GMH-DDHGRGKVVFACRS-REFCW---QADGVIHVQQLCQREA  135 (424)
Q Consensus        64 ~~~~~~~~l~~~l~~~~~LlvlD~~~~~~--~~~~~-~~~-~~~~~~~iiittr~-~~~~~---~~~~~~~l~~l~~~~~  135 (424)
                               ..-..++.-++|||+++...  .++.+ ... ....++++|++|.+ ..+..   .....+++.+++.++.
T Consensus       113 ---------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI  183 (944)
T PRK14949        113 ---------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEI  183 (944)
T ss_pred             ---------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHH
Confidence                     01113567799999999873  33443 111 22234555555444 44433   6678999999999999


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHH
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLI  174 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~  174 (424)
                      .+++.+.+...  .....++.+..|++.++|.|..+..+
T Consensus       184 ~~~L~~il~~E--gI~~edeAL~lIA~~S~Gd~R~ALnL  220 (944)
T PRK14949        184 GTQLNHILTQE--QLPFEAEALTLLAKAANGSMRDALSL  220 (944)
T ss_pred             HHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            99998877553  22333567788999999988644433

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.42  E-value=6.3e-06  Score=77.85  Aligned_cols=171  Identities=13%  Similarity=0.024  Sum_probs=92.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCC-ceEEEEEeccCCC-H-HHHHH--HHHHHhccc-ccccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRF-DIIFWENINTDGN-I-RDIQE--IILERLKVN-AKELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~-~-~~~~~--~i~~~l~~~-~~~~~~~~~~~~l~~~   75 (424)
                      +.+.++|+.|+||||+|+.+++.... ..+ ...+.+++..... . ..+..  .....++.. .......+....+.+.
T Consensus        37 ~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (337)
T PRK12402         37 PHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKE  115 (337)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHH
Confidence            35789999999999999999988742 222 2244555432110 0 00000  000000000 0000011112211111


Q ss_pred             h------ccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHHHHHHHHH
Q 037045           76 L------NDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQREAKKLFWE  141 (424)
Q Consensus        76 l------~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~~~~l~~~  141 (424)
                      .      .+.+-+||+|+++....  .+.+  .+......+++|+|+.... ...   .....+++.+++.++..+++.+
T Consensus       116 ~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~  195 (337)
T PRK12402        116 YASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLES  195 (337)
T ss_pred             HHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHH
Confidence            1      13345899999987632  2222  1112234567777775432 222   5567889999999999999988


Q ss_pred             HhcccCCCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045          142 VVGVHLKKYPDIELVADSIVKECGGMPYMLKLIG  175 (424)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a  175 (424)
                      .+....  ....++.+..+++.++|.+..+....
T Consensus       196 ~~~~~~--~~~~~~al~~l~~~~~gdlr~l~~~l  227 (337)
T PRK12402        196 IAEAEG--VDYDDDGLELIAYYAGGDLRKAILTL  227 (337)
T ss_pred             HHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            775442  12346678889999999876654433

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.41  E-value=3.7e-05  Score=72.04  Aligned_cols=153  Identities=14%  Similarity=0.116  Sum_probs=89.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEe--ccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENI--NTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDR   79 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~   79 (424)
                      +.+.|+|+.|+||||+|+.+++...... +. ..++.+  +.......+...+ ..+....+             .....
T Consensus        39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~-~~~i~~~~~~~~~~~~~~~~i-~~~~~~~~-------------~~~~~  102 (319)
T PRK00440         39 PHLLFAGPPGTGKTTAALALARELYGED-WR-ENFLELNASDERGIDVIRNKI-KEFARTAP-------------VGGAP  102 (319)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHcCCc-cc-cceEEeccccccchHHHHHHH-HHHHhcCC-------------CCCCC
Confidence            3578999999999999999999874222 21 122222  2222222111111 11110000             00123


Q ss_pred             cEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHHHHHHHHHHhcccCCCCc
Q 037045           80 SYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKKYP  151 (424)
Q Consensus        80 ~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~  151 (424)
                      +-++++|+++....  .+.+  .+......+.+|+++.... ...   .....+++.+++.++....+.+.+....  ..
T Consensus       103 ~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~--~~  180 (319)
T PRK00440        103 FKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEG--IE  180 (319)
T ss_pred             ceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcC--CC
Confidence            56899999886532  2222  1122334567777664322 211   4566789999999999999988876542  22


Q ss_pred             cHHHHHHHHHHhcCCchHHHH
Q 037045          152 DIELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       152 ~~~~~~~~I~~~~~g~Plai~  172 (424)
                      ..++.+..+++.++|.+..+.
T Consensus       181 i~~~al~~l~~~~~gd~r~~~  201 (319)
T PRK00440        181 ITDDALEAIYYVSEGDMRKAI  201 (319)
T ss_pred             CCHHHHHHHHHHcCCCHHHHH
Confidence            335678889999999886643

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.41  E-value=6.3e-06  Score=80.09  Aligned_cols=175  Identities=13%  Similarity=0.163  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCc-eEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFD-IIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      -+.|+|++|+|||+|++.+++.... .+.+ .++|++.      +++..++...+...    .    ...+.+.++...-
T Consensus       132 ~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~~~~----~----~~~f~~~~~~~~d  196 (440)
T PRK14088        132 PLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSMKEG----K----LNEFREKYRKKVD  196 (440)
T ss_pred             eEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHhcc----c----HHHHHHHHHhcCC
Confidence            4789999999999999999998742 2233 4677653      45555655554322    1    1223333433455


Q ss_pred             EEEEcCCCCcch---h-hhh--ccC-CCCCCcEEEEEec-chhhh----c------ccCceEEecCCCHHHHHHHHHHHh
Q 037045           82 VLFLDGVSSEIN---F-KEI--GMH-DDHGRGKVVFACR-SREFC----W------QADGVIHVQQLCQREAKKLFWEVV  143 (424)
Q Consensus        82 LlvlD~~~~~~~---~-~~~--~~~-~~~~~~~iiittr-~~~~~----~------~~~~~~~l~~l~~~~~~~l~~~~~  143 (424)
                      +|++||++....   . +.+  .+. ....+..+|+||. .....    .      .....+++++.+.++-.+++++.+
T Consensus       197 vLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~  276 (440)
T PRK14088        197 VLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKML  276 (440)
T ss_pred             EEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHH
Confidence            899999985421   1 122  111 1233457888875 22111    1      445688899999999999999887


Q ss_pred             cccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHh-------CCcchHHHHHHHHHh
Q 037045          144 GVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELA-------NQSEVAIWRATADEL  194 (424)
Q Consensus       144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~-------~~~~~~~~~~~~~~l  194 (424)
                      ...  .....++.+..|++.+.|....+..+-..+.       ...+.+..++.+..+
T Consensus       277 ~~~--~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~  332 (440)
T PRK14088        277 EIE--HGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF  332 (440)
T ss_pred             Hhc--CCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            643  2223467888999999887665554433221       114455555666554

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.40  E-value=2.9e-05  Score=77.23  Aligned_cols=152  Identities=17%  Similarity=0.141  Sum_probs=90.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCC-------------------CCceEEEEEeccCCCHHHHHHHHHHHhccccccc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESR-------------------RFDIIFWENINTDGNIRDIQEIILERLKVNAKEL   63 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~   63 (424)
                      .+.++|+.|+||||+|+.+++...-..                   .+--++.++.......+++. ++......     
T Consensus        39 AyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIR-eli~~~~y-----  112 (702)
T PRK14960         39 AYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTR-ELLDNVPY-----  112 (702)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHH-HHHHHHhh-----
Confidence            467899999999999999988763111                   11112222322222222211 11111110     


Q ss_pred             ChhHHHHHHHHHhccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHH
Q 037045           64 NNDLRADIISKELNDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREA  135 (424)
Q Consensus        64 ~~~~~~~~l~~~l~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~  135 (424)
                                .-..++.-++|||+++...  ..+.+  .+-....+.++|++|.+.....    .....+++.+++.++.
T Consensus       113 ----------~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI  182 (702)
T PRK14960        113 ----------APTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEI  182 (702)
T ss_pred             ----------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHH
Confidence                      0112456699999999764  23333  1112224557777665533322    7788999999999999


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~  172 (424)
                      .+.+.+.+...  .....++....|++.++|.+..+.
T Consensus       183 ~k~L~~Il~kE--gI~id~eAL~~IA~~S~GdLRdAL  217 (702)
T PRK14960        183 TKHLGAILEKE--QIAADQDAIWQIAESAQGSLRDAL  217 (702)
T ss_pred             HHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHH
Confidence            99998888654  223335677889999999874443

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=98.40  E-value=1.9e-05  Score=77.50  Aligned_cols=92  Identities=11%  Similarity=0.043  Sum_probs=61.8

Q ss_pred             cCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045           78 DRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK  149 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~  149 (424)
                      +++-++|+|+++...  .++.+  .+......+.+|+ ||+...+..   .....+++.+++.++..+.+.+.+....  
T Consensus       127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg--  204 (507)
T PRK06645        127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN--  204 (507)
T ss_pred             CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC--
Confidence            466799999998763  34444  1122234455554 544444443   6667899999999999999998886542  


Q ss_pred             CccHHHHHHHHHHhcCCchHHH
Q 037045          150 YPDIELVADSIVKECGGMPYML  171 (424)
Q Consensus       150 ~~~~~~~~~~I~~~~~g~Plai  171 (424)
                      ....++....|++.++|.+..+
T Consensus       205 i~ie~eAL~~Ia~~s~GslR~a  226 (507)
T PRK06645        205 LKTDIEALRIIAYKSEGSARDA  226 (507)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHH
Confidence            2223556788999999987444

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.39  E-value=1.1e-06  Score=81.86  Aligned_cols=88  Identities=17%  Similarity=0.232  Sum_probs=59.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC--CHHHHHHHHHHHhcccc-cccChhHH-----HHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG--NIRDIQEIILERLKVNA-KELNNDLR-----ADIISK   74 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~-~~~~~~~~-----~~~l~~   74 (424)
                      -..|+|++|+||||||+++++.... .+|+..+||.+....  ++.++++.+...+-... +.......     .-...+
T Consensus       171 R~lIvgppGvGKTTLaK~Ian~I~~-nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae  249 (416)
T PRK09376        171 RGLIVAPPKAGKTVLLQNIANSITT-NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK  249 (416)
T ss_pred             eEEEeCCCCCChhHHHHHHHHHHHh-hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999864 389999999987765  77778877763222111 11111111     001111


Q ss_pred             H--hccCcEEEEEcCCCCc
Q 037045           75 E--LNDRSYVLFLDGVSSE   91 (424)
Q Consensus        75 ~--l~~~~~LlvlD~~~~~   91 (424)
                      .  -.+++++|++|++...
T Consensus       250 ~~~e~G~dVlL~iDsItR~  268 (416)
T PRK09376        250 RLVEHGKDVVILLDSITRL  268 (416)
T ss_pred             HHHHcCCCEEEEEEChHHH
Confidence            1  2568999999998754

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.39  E-value=1.6e-05  Score=78.21  Aligned_cols=159  Identities=12%  Similarity=0.055  Sum_probs=89.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH-
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE-   75 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~-   75 (424)
                      .+.++|++|+||||+|+.+++...-...+...+|.+.+.        ..+........      .....++ +..+.+. 
T Consensus        38 a~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~~~~h~dv~el~~~~~~~vd~-iR~l~~~~  108 (504)
T PRK14963         38 AYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVRRGAHPDVLEIDAASNNSVED-VRDLREKV  108 (504)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHhcCCCCceEEecccccCCHHH-HHHHHHHH
Confidence            458999999999999999998874212222222222110        00000000000      0001111 1111111 


Q ss_pred             ----hccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEec-chhhhc---ccCceEEecCCCHHHHHHHHHHHh
Q 037045           76 ----LNDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACR-SREFCW---QADGVIHVQQLCQREAKKLFWEVV  143 (424)
Q Consensus        76 ----l~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr-~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~  143 (424)
                          +.+++-++|||+++...  .++.+  .+......+.+|++|. ...+..   .....+++.+++.++..+.+.+.+
T Consensus       109 ~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~  188 (504)
T PRK14963        109 LLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLL  188 (504)
T ss_pred             hhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHH
Confidence                12456699999998663  23333  1112223445554444 333333   667899999999999999999887


Q ss_pred             cccCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045          144 GVHLKKYPDIELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai~  172 (424)
                      ....  ....++.+..|++.++|.+..+.
T Consensus       189 ~~eg--i~i~~~Al~~ia~~s~GdlR~al  215 (504)
T PRK14963        189 EAEG--REAEPEALQLVARLADGAMRDAE  215 (504)
T ss_pred             HHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence            6542  22235678889999999996554

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.39  E-value=1.5e-05  Score=78.16  Aligned_cols=196  Identities=12%  Similarity=0.145  Sum_probs=112.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -+.|+|++|+|||+|++.+++.......--.++|++..      ++...+...+...    .    ...+.+.++ +.-+
T Consensus       150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~----~----~~~~~~~~~-~~dl  214 (450)
T PRK00149        150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN----T----MEEFKEKYR-SVDV  214 (450)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC----c----HHHHHHHHh-cCCE
Confidence            47899999999999999999988422112235665533      3344444444321    1    122333333 2348


Q ss_pred             EEEcCCCCcch----hhhh--ccC-CCCCCcEEEEEecchh-----hhc------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045           83 LFLDGVSSEIN----FKEI--GMH-DDHGRGKVVFACRSRE-----FCW------QADGVIHVQQLCQREAKKLFWEVVG  144 (424)
Q Consensus        83 lvlD~~~~~~~----~~~~--~~~-~~~~~~~iiittr~~~-----~~~------~~~~~~~l~~l~~~~~~~l~~~~~~  144 (424)
                      |+|||++....    .+.+  .+. ....+..+|+|+....     +..      .....+++++.+.++..+++++.+.
T Consensus       215 LiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~  294 (450)
T PRK00149        215 LLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAE  294 (450)
T ss_pred             EEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHH
Confidence            89999976421    1222  011 1223456888776431     111      4446899999999999999999886


Q ss_pred             ccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHh-------CCcchHHHHHHHHHhhhcCcccccchhhhhHHHhhhh
Q 037045          145 VHLKKYPDIELVADSIVKECGGMPYMLKLIGKELA-------NQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVY  216 (424)
Q Consensus       145 ~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~s~  216 (424)
                      ..  .....++....|++.+.|....+..+...+.       ..-+.+..+..++.+.. .....-..+.|...+.-.|
T Consensus       295 ~~--~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~~~-~~~~~~~~~~i~~~v~~~~  370 (450)
T PRK00149        295 EE--GIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLA-AQKKKITIENIQKVVAEYY  370 (450)
T ss_pred             Hc--CCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhc-cCCCCCCHHHHHHHHHHHc
Confidence            43  2234466788999999998876544433221       12455556666665422 1111122345555555555

>PLN03025 replication factor C subunit; Provisional

Probab=98.38  E-value=8.4e-06  Score=76.19  Aligned_cols=154  Identities=17%  Similarity=0.188  Sum_probs=88.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCc-eEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFD-IIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      -+.++|++|+||||+|..+++... ...|. .++-++.+...+.+. .+.+...+......            ...++.-
T Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~~-vr~~i~~~~~~~~~------------~~~~~~k  101 (319)
T PLN03025         36 NLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGIDV-VRNKIKMFAQKKVT------------LPPGRHK  101 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHHH-HHHHHHHHHhcccc------------CCCCCeE
Confidence            367899999999999999999863 22232 222222222222222 22222211100000            0013456


Q ss_pred             EEEEcCCCCcchhh--hh-c-cCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHHHHHHHHHHhcccCCCCccH
Q 037045           82 VLFLDGVSSEINFK--EI-G-MHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDI  153 (424)
Q Consensus        82 LlvlD~~~~~~~~~--~~-~-~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~  153 (424)
                      ++|+|+++....-.  .+ . +-.....+++++++.... ...   +....+++.+++.++..+.+.+.+....  ....
T Consensus       102 viiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~eg--i~i~  179 (319)
T PLN03025        102 IVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEK--VPYV  179 (319)
T ss_pred             EEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcC--CCCC
Confidence            99999999864322  22 0 112234566776664432 222   5567899999999999999988876542  1223


Q ss_pred             HHHHHHHHHhcCCchHHHH
Q 037045          154 ELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       154 ~~~~~~I~~~~~g~Plai~  172 (424)
                      ++....|++.++|....+.
T Consensus       180 ~~~l~~i~~~~~gDlR~al  198 (319)
T PLN03025        180 PEGLEAIIFTADGDMRQAL  198 (319)
T ss_pred             HHHHHHHHHHcCCCHHHHH
Confidence            5577889999999874443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.38  E-value=3.3e-08  Score=89.99  Aligned_cols=123  Identities=23%  Similarity=0.385  Sum_probs=103.1

Q ss_pred             EEEeeccCCCCCCCCcCcc-cccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeeeccccc
Q 037045          267 RLSLFGFPSSTLPDMPNCC-EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFLRSSCS  344 (424)
Q Consensus       267 ~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l~~~~~  344 (424)
                      .++.++-.+.++|.  .++ ..+.+.+..|.++.+|+..|..+++||+||++.|.++.+ |..|.++++|.+|-+. +++
T Consensus        50 ~VdCr~~GL~eVP~--~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvly-g~N  126 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPA--NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLY-GNN  126 (498)
T ss_pred             eEEccCCCcccCcc--cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhh-cCC
Confidence            34455555555553  333 578899999999999999999999999999999999776 6789999999999884 669


Q ss_pred             ccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccC
Q 037045          345 LLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVEN  392 (424)
Q Consensus       345 ~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~  392 (424)
                      .+.++|. .++.+..|+.|.+.-|++..++.. +..+++|..|.+-+|.+
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~  176 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI  176 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh
Confidence            9999997 588999999999999998877666 99999999999999864

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.37  E-value=2.5e-05  Score=77.47  Aligned_cols=197  Identities=10%  Similarity=0.078  Sum_probs=113.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      .+.|+|..|+|||.|++.+++.......--.++|++      .+++..++...+...        ....+++.+++- =+
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~--------~~~~f~~~y~~~-DL  380 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG--------KGDSFRRRYREM-DI  380 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc--------cHHHHHHHhhcC-CE
Confidence            478999999999999999999874211123456654      344444444443211        122233334332 47


Q ss_pred             EEEcCCCCcch---hhhhccC----CCCCCcEEEEEecchh-----hhc------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045           83 LFLDGVSSEIN---FKEIGMH----DDHGRGKVVFACRSRE-----FCW------QADGVIHVQQLCQREAKKLFWEVVG  144 (424)
Q Consensus        83 lvlD~~~~~~~---~~~~~~~----~~~~~~~iiittr~~~-----~~~------~~~~~~~l~~l~~~~~~~l~~~~~~  144 (424)
                      |||||++....   +++..|.    ....+..|||||+...     +..      .....++++..+.+.-.+++++.+.
T Consensus       381 LlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~  460 (617)
T PRK14086        381 LLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV  460 (617)
T ss_pred             EEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence            88899986522   1111111    2334567888887521     111      6677889999999999999998876


Q ss_pred             ccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHh-------CCcchHHHHHHHHHhhhcCcccccchhhhhHHHhhhh
Q 037045          145 VHLKKYPDIELVADSIVKECGGMPYMLKLIGKELA-------NQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVY  216 (424)
Q Consensus       145 ~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~s~  216 (424)
                      ..  .....++++..|++.+.+....|..+...|.       ...+.+..+.+++.+........-..+.|...+...|
T Consensus       461 ~r--~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~~~~~~~~~it~d~I~~~Va~~f  537 (617)
T PRK14086        461 QE--QLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPEDSAPEITAAAIMAATADYF  537 (617)
T ss_pred             hc--CCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccccCCcCCHHHHHHHHHHHh
Confidence            54  2233367888899988887665554443321       1134444555555443211111112245555555555

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.35  E-value=5.1e-07  Score=94.11  Aligned_cols=130  Identities=27%  Similarity=0.355  Sum_probs=103.2

Q ss_pred             CCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCC--CCcCChh-hhcccccceeeecccccccccCChhhhc
Q 037045          279 PDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETN--IGCLPPS-ISRLINLNALFLRSSCSLLLQLPAEIGR  355 (424)
Q Consensus       279 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~--~~~~p~~-~~~l~~L~~l~l~~~~~~~~~lp~~~~~  355 (424)
                      |...+....+...+.+|.+...+..  ...+.|+.|-+.+|.  +..++.. |..++.|+.||++ .+...+.+|+.++.
T Consensus       517 ~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs-~~~~l~~LP~~I~~  593 (889)
T KOG4658|consen  517 PQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLS-GNSSLSKLPSSIGE  593 (889)
T ss_pred             ccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECC-CCCccCcCChHHhh
Confidence            3344555678888888888776653  345578888888885  5566544 7789999999995 67778899999999


Q ss_pred             cCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeec
Q 037045          356 LQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELII  423 (424)
Q Consensus       356 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  423 (424)
                      +-+|+.|+++++.++.+|.+++++++|.+|++..+...+.+            ...+..|.+||+|.+
T Consensus       594 Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~------------~~i~~~L~~Lr~L~l  649 (889)
T KOG4658|consen  594 LVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI------------PGILLELQSLRVLRL  649 (889)
T ss_pred             hhhhhcccccCCCccccchHHHHHHhhheeccccccccccc------------cchhhhcccccEEEe
Confidence            99999999999999999999999999999999998644332            225556888888875

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.34  E-value=4.8e-05  Score=73.87  Aligned_cols=147  Identities=13%  Similarity=0.152  Sum_probs=89.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      .+.|+|+.|+|||+|++.+++...  ...-.+++++      .+.+...+...+...        ....+++.++ ..-+
T Consensus       143 pl~L~G~~G~GKTHLl~Ai~~~l~--~~~~~v~yi~------~~~f~~~~~~~l~~~--------~~~~f~~~~~-~~dv  205 (445)
T PRK12422        143 PIYLFGPEGSGKTHLMQAAVHALR--ESGGKILYVR------SELFTEHLVSAIRSG--------EMQRFRQFYR-NVDA  205 (445)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEee------HHHHHHHHHHHHhcc--------hHHHHHHHcc-cCCE
Confidence            478999999999999999999874  2223456655      334444554444321        1122333333 3348


Q ss_pred             EEEcCCCCcch----hhhh--ccC-CCCCCcEEEEEecch-h----hhc------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045           83 LFLDGVSSEIN----FKEI--GMH-DDHGRGKVVFACRSR-E----FCW------QADGVIHVQQLCQREAKKLFWEVVG  144 (424)
Q Consensus        83 lvlD~~~~~~~----~~~~--~~~-~~~~~~~iiittr~~-~----~~~------~~~~~~~l~~l~~~~~~~l~~~~~~  144 (424)
                      |++||++....    .+++  .+. ....+..||+||... .    +..      .....+.+++++.++..+++++.+.
T Consensus       206 LiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~  285 (445)
T PRK12422        206 LFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAE  285 (445)
T ss_pred             EEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence            88899876532    1122  111 122356788888542 1    111      3457889999999999999988876


Q ss_pred             ccCCCCccHHHHHHHHHHhcCCch
Q 037045          145 VHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       145 ~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      ..  .....++....|++.+.+.-
T Consensus       286 ~~--~~~l~~evl~~la~~~~~di  307 (445)
T PRK12422        286 AL--SIRIEETALDFLIEALSSNV  307 (445)
T ss_pred             Hc--CCCCCHHHHHHHHHhcCCCH
Confidence            53  12333566777888777655

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.32  E-value=5e-06  Score=67.95  Aligned_cols=102  Identities=20%  Similarity=0.201  Sum_probs=58.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +.+.|+|++|+|||++++.+++...  ..-..+++++.............+...           ............+..
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~   86 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF-----------LVRLLFELAEKAKPG   86 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-----------hHhHHHHhhccCCCe
Confidence            4688999999999999999999884  333457777765543322222111100           001111122234678


Q ss_pred             EEEEcCCCCc--chhhhh--ccC--CC----CCCcEEEEEecchh
Q 037045           82 VLFLDGVSSE--INFKEI--GMH--DD----HGRGKVVFACRSRE  116 (424)
Q Consensus        82 LlvlD~~~~~--~~~~~~--~~~--~~----~~~~~iiittr~~~  116 (424)
                      ++|+|+++..  .....+  .+.  ..    ..+..+|+||....
T Consensus        87 ~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          87 VLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             EEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            9999999864  111111  111  11    35778888887654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.32  E-value=5.7e-07  Score=61.59  Aligned_cols=57  Identities=33%  Similarity=0.570  Sum_probs=36.7

Q ss_pred             ccceeeecccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeecccc
Q 037045          333 NLNALFLRSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVE  391 (424)
Q Consensus       333 ~L~~l~l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~  391 (424)
                      +|+++++  ..+.+..+|. .+..+++|+.|++++|.++.+|++ +..+++|+++++++|.
T Consensus         2 ~L~~L~l--~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDL--SNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEE--TSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEEC--CCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4566666  5556666654 456667777777777766666554 6677777777777664

...

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.32  E-value=1.8e-05  Score=78.54  Aligned_cols=94  Identities=11%  Similarity=0.015  Sum_probs=62.2

Q ss_pred             cCcEEEEEcCCCCcc--hhhhh-ccC-CCCCCcEEEEEec-chhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045           78 DRSYVLFLDGVSSEI--NFKEI-GMH-DDHGRGKVVFACR-SREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK  149 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~--~~~~~-~~~-~~~~~~~iiittr-~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~  149 (424)
                      ++.-++|||+++...  ..+.+ ... .-..++++|++|. ...+..   +....+.+..++.++..+.+.+.+..+.  
T Consensus       123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg--  200 (700)
T PRK12323        123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG--  200 (700)
T ss_pred             CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC--
Confidence            456799999999874  33333 111 2224455555554 444443   7788999999999999999988776442  


Q ss_pred             CccHHHHHHHHHHhcCCchHHHHH
Q 037045          150 YPDIELVADSIVKECGGMPYMLKL  173 (424)
Q Consensus       150 ~~~~~~~~~~I~~~~~g~Plai~~  173 (424)
                      ....++....|++.++|.+.....
T Consensus       201 i~~d~eAL~~IA~~A~Gs~RdALs  224 (700)
T PRK12323        201 IAHEVNALRLLAQAAQGSMRDALS  224 (700)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHH
Confidence            122245668899999999864433

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.31  E-value=1.3e-05  Score=77.13  Aligned_cols=160  Identities=13%  Similarity=0.024  Sum_probs=89.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChh---HHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNND---LRADIIS   73 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~---~~~~~l~   73 (424)
                      .+.++|+.|+||||+|+.+++...- .....  ...++...+    ...+........      .....+   +..+.+.
T Consensus        42 a~Lf~GP~GtGKTTlAriLAk~Lnc-e~~~~--~~pCg~C~s----C~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~  114 (484)
T PRK14956         42 AYIFFGPRGVGKTTIARILAKRLNC-ENPIG--NEPCNECTS----CLEITKGISSDVLEIDAASNRGIENIRELRDNVK  114 (484)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCc-ccccC--ccccCCCcH----HHHHHccCCccceeechhhcccHHHHHHHHHHHH
Confidence            3689999999999999999998742 11110  011111111    112221111110      001111   1111111


Q ss_pred             H-HhccCcEEEEEcCCCCcc--hhhhh-ccC-CCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHHHHHHHHHHHhc
Q 037045           74 K-ELNDRSYVLFLDGVSSEI--NFKEI-GMH-DDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVG  144 (424)
Q Consensus        74 ~-~l~~~~~LlvlD~~~~~~--~~~~~-~~~-~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~  144 (424)
                      . -..++.-++|||+++...  .++.+ ... .......+|+ ||....+..   .....+.+..++.++..+.+.+.+.
T Consensus       115 ~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~  194 (484)
T PRK14956        115 FAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCK  194 (484)
T ss_pred             hhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHH
Confidence            1 113456799999999764  34444 111 1123444444 444444433   7778899999999999999988876


Q ss_pred             ccCCCCccHHHHHHHHHHhcCCchHHH
Q 037045          145 VHLKKYPDIELVADSIVKECGGMPYML  171 (424)
Q Consensus       145 ~~~~~~~~~~~~~~~I~~~~~g~Plai  171 (424)
                      ...  ....++....|++.++|.+...
T Consensus       195 ~Eg--i~~e~eAL~~Ia~~S~Gd~RdA  219 (484)
T PRK14956        195 IEN--VQYDQEGLFWIAKKGDGSVRDM  219 (484)
T ss_pred             HcC--CCCCHHHHHHHHHHcCChHHHH
Confidence            542  2334567889999999998443

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.30  E-value=1.1e-05  Score=82.65  Aligned_cols=146  Identities=16%  Similarity=0.225  Sum_probs=84.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh--ccCc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL--NDRS   80 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l--~~~~   80 (424)
                      -+.++|++|+||||+|+.+++..  ...|.   .++... ....++ ++                ......+.+  .+++
T Consensus        54 slLL~GPpGtGKTTLA~aIA~~~--~~~f~---~lna~~-~~i~di-r~----------------~i~~a~~~l~~~~~~  110 (725)
T PRK13341         54 SLILYGPPGVGKTTLARIIANHT--RAHFS---SLNAVL-AGVKDL-RA----------------EVDRAKERLERHGKR  110 (725)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh--cCcce---eehhhh-hhhHHH-HH----------------HHHHHHHHhhhcCCc
Confidence            46899999999999999999876  34442   111110 011111 11                111111111  2457


Q ss_pred             EEEEEcCCCCcch--hhhhccCCCCCCcEEEEE--ecchhh--hc---ccCceEEecCCCHHHHHHHHHHHhccc-----
Q 037045           81 YVLFLDGVSSEIN--FKEIGMHDDHGRGKVVFA--CRSREF--CW---QADGVIHVQQLCQREAKKLFWEVVGVH-----  146 (424)
Q Consensus        81 ~LlvlD~~~~~~~--~~~~~~~~~~~~~~iiit--tr~~~~--~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~-----  146 (424)
                      .++|||+++....  .+.+ ++....+..++|+  |.+...  ..   +....+.+++++.++...++.+.+...     
T Consensus       111 ~IL~IDEIh~Ln~~qQdaL-L~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g  189 (725)
T PRK13341        111 TILFIDEVHRFNKAQQDAL-LPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYG  189 (725)
T ss_pred             eEEEEeChhhCCHHHHHHH-HHHhcCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            7999999987532  3333 2222334545543  333221  11   446689999999999999998877521     


Q ss_pred             CCCCccHHHHHHHHHHhcCCchHHHH
Q 037045          147 LKKYPDIELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       147 ~~~~~~~~~~~~~I~~~~~g~Plai~  172 (424)
                      .......++....|++.+.|....+.
T Consensus       190 ~~~v~I~deaL~~La~~s~GD~R~ll  215 (725)
T PRK13341        190 DRKVDLEPEAEKHLVDVANGDARSLL  215 (725)
T ss_pred             CcccCCCHHHHHHHHHhCCCCHHHHH
Confidence            11223346677889999999764443

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=98.30  E-value=4.6e-05  Score=66.22  Aligned_cols=171  Identities=14%  Similarity=0.126  Sum_probs=105.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChh----HHHHHHHHHh-
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNND----LRADIISKEL-   76 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~----~~~~~l~~~l-   76 (424)
                      +++.++|.-|+|||.+++.+.....   .-+...-+.-.+..+...+...+...+..+. ..+..    +....+.+.. 
T Consensus        52 g~~~vtGevGsGKTv~~Ral~~s~~---~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p-~~~~~~~~e~~~~~L~al~~  127 (269)
T COG3267          52 GILAVTGEVGSGKTVLRRALLASLN---EDQVAVVVIDKPTLSDATLLEAIVADLESQP-KVNVNAVLEQIDRELAALVK  127 (269)
T ss_pred             ceEEEEecCCCchhHHHHHHHHhcC---CCceEEEEecCcchhHHHHHHHHHHHhccCc-cchhHHHHHHHHHHHHHHHH
Confidence            4789999999999999995555552   2222332233445677788888888888744 22222    2222233222 


Q ss_pred             ccCc-EEEEEcCCCCcc--hhhhh-ccC----CCCCCcEEEEEecchh--------hhc---ccCceEEecCCCHHHHHH
Q 037045           77 NDRS-YVLFLDGVSSEI--NFKEI-GMH----DDHGRGKVVFACRSRE--------FCW---QADGVIHVQQLCQREAKK  137 (424)
Q Consensus        77 ~~~~-~LlvlD~~~~~~--~~~~~-~~~----~~~~~~~iiittr~~~--------~~~---~~~~~~~l~~l~~~~~~~  137 (424)
                      ++++ ..+++|+++...  .++.+ .+.    .....-+|+..-..+-        ...   .....|++.+++.++...
T Consensus       128 ~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~  207 (269)
T COG3267         128 KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGL  207 (269)
T ss_pred             hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHH
Confidence            4566 999999998753  34443 111    1111123444332211        111   333338999999999999


Q ss_pred             HHHHHhcccCCCCccH-HHHHHHHHHhcCCchHHHHHHHH
Q 037045          138 LFWEVVGVHLKKYPDI-ELVADSIVKECGGMPYMLKLIGK  176 (424)
Q Consensus       138 l~~~~~~~~~~~~~~~-~~~~~~I~~~~~g~Plai~~~a~  176 (424)
                      +++.+......+.+.+ ++....|.....|.|.+|+.++.
T Consensus       208 yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~  247 (269)
T COG3267         208 YLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT  247 (269)
T ss_pred             HHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence            9999887663333333 44668899999999999998874

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.30  E-value=3.7e-07  Score=62.49  Aligned_cols=54  Identities=31%  Similarity=0.495  Sum_probs=31.6

Q ss_pred             cccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeee
Q 037045          286 EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFL  339 (424)
Q Consensus       286 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l  339 (424)
                      +|+.|++++|+++.+++..+..+++|++|++++|.+..+| ..|..+++|+++++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l   56 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDL   56 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEE
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeC
Confidence            4556666666666655555555666666666666654443 34566666666666

...

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.29  E-value=3.3e-05  Score=76.33  Aligned_cols=154  Identities=17%  Similarity=0.150  Sum_probs=90.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCC-------------------CCceEEEEEeccCCCHHHHHHHHHHHhccccccc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESR-------------------RFDIIFWENINTDGNIRDIQEIILERLKVNAKEL   63 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~   63 (424)
                      .+.++|+.|+||||+|+.+++...-..                   .|.-+++++.......+++ +++...        
T Consensus        40 a~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~i-r~ii~~--------  110 (546)
T PRK14957         40 AYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEET-KEILDN--------  110 (546)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHH-HHHHHH--------
Confidence            467899999999999999998663111                   1222333333222222221 122211        


Q ss_pred             ChhHHHHHHHH-HhccCcEEEEEcCCCCcch--hhhh-ccC-CCCCCcEEE-EEecchhhhc---ccCceEEecCCCHHH
Q 037045           64 NNDLRADIISK-ELNDRSYVLFLDGVSSEIN--FKEI-GMH-DDHGRGKVV-FACRSREFCW---QADGVIHVQQLCQRE  134 (424)
Q Consensus        64 ~~~~~~~~l~~-~l~~~~~LlvlD~~~~~~~--~~~~-~~~-~~~~~~~ii-ittr~~~~~~---~~~~~~~l~~l~~~~  134 (424)
                              +.. -..+++-++|+|+++....  .+.+ ... .....+.+| +||....+..   .....+++.+++.++
T Consensus       111 --------~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~e  182 (546)
T PRK14957        111 --------IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQAD  182 (546)
T ss_pred             --------HHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHH
Confidence                    111 1235667999999987643  3333 111 222344555 4554443332   668899999999999


Q ss_pred             HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchH-HHHHHH
Q 037045          135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPY-MLKLIG  175 (424)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Pl-ai~~~a  175 (424)
                      ..+.+.+.+....  ....+.....|++.++|.+. ++..+-
T Consensus       183 I~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlLe  222 (546)
T PRK14957        183 IKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLLD  222 (546)
T ss_pred             HHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            9988888765532  23335567889999999764 444443

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.29  E-value=8.4e-06  Score=77.67  Aligned_cols=143  Identities=15%  Similarity=0.194  Sum_probs=80.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-ccCcE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-NDRSY   81 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~   81 (424)
                      -+.|+|++|+|||++|+.+++..  ...|-     .+..    ..+....   ++.      .......+.+.. ...++
T Consensus       158 gvLL~GppGtGKT~lakaia~~l--~~~~~-----~v~~----~~l~~~~---~g~------~~~~i~~~f~~a~~~~p~  217 (364)
T TIGR01242       158 GVLLYGPPGTGKTLLAKAVAHET--NATFI-----RVVG----SELVRKY---IGE------GARLVREIFELAKEKAPS  217 (364)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhC--CCCEE-----ecch----HHHHHHh---hhH------HHHHHHHHHHHHHhcCCc
Confidence            37899999999999999999987  33332     2111    1111110   010      001111111111 23578


Q ss_pred             EEEEcCCCCcc----------------hhhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHH
Q 037045           82 VLFLDGVSSEI----------------NFKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQRE  134 (424)
Q Consensus        82 LlvlD~~~~~~----------------~~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~  134 (424)
                      +|+||+++...                .+..+  .+.  ....+..||.||.......       ..+..+++...+.++
T Consensus       218 il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~  297 (364)
T TIGR01242       218 IIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEG  297 (364)
T ss_pred             EEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHH
Confidence            99999987541                11111  011  1234567787877543322       235678999999999


Q ss_pred             HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      ..++|..+.........   .....+++.+.|+.
T Consensus       298 r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s  328 (364)
T TIGR01242       298 RLEILKIHTRKMKLAED---VDLEAIAKMTEGAS  328 (364)
T ss_pred             HHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence            99999888754421111   12456777787764

Many proteins may score above the trusted cutoff because an internal

>PRK06620 hypothetical protein; Validated

Probab=98.29  E-value=8.9e-06  Score=71.05  Aligned_cols=135  Identities=9%  Similarity=0.018  Sum_probs=82.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +.+.|+|++|+|||+|++.+++...  .     .++....      ..                .       +.+ ...-
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~~~~------~~----------------~-------~~~-~~~d   87 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIKDIF------FN----------------E-------EIL-EKYN   87 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcchhh------hc----------------h-------hHH-hcCC
Confidence            3589999999999999999887652  1     1211000      00                0       011 1234


Q ss_pred             EEEEcCCCCcchhhhh-ccC-CCCCCcEEEEEecchhhh---c------ccCceEEecCCCHHHHHHHHHHHhcccCCCC
Q 037045           82 VLFLDGVSSEINFKEI-GMH-DDHGRGKVVFACRSREFC---W------QADGVIHVQQLCQREAKKLFWEVVGVHLKKY  150 (424)
Q Consensus        82 LlvlD~~~~~~~~~~~-~~~-~~~~~~~iiittr~~~~~---~------~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~  150 (424)
                      ++++||++...+..-+ .+. ....|..+|+|++.....   +      ....++++++++.++-.+++++.+...  .-
T Consensus        88 ~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~--~l  165 (214)
T PRK06620         88 AFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS--SV  165 (214)
T ss_pred             EEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc--CC
Confidence            7888999865331111 111 235567888888743221   1      556689999999999888888776532  12


Q ss_pred             ccHHHHHHHHHHhcCCchHHHHHHH
Q 037045          151 PDIELVADSIVKECGGMPYMLKLIG  175 (424)
Q Consensus       151 ~~~~~~~~~I~~~~~g~Plai~~~a  175 (424)
                      ...+++...|++.+.|....+.-+-
T Consensus       166 ~l~~ev~~~L~~~~~~d~r~l~~~l  190 (214)
T PRK06620        166 TISRQIIDFLLVNLPREYSKIIEIL  190 (214)
T ss_pred             CCCHHHHHHHHHHccCCHHHHHHHH
Confidence            3346677888888887765544333

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=98.28  E-value=1.8e-05  Score=72.33  Aligned_cols=137  Identities=17%  Similarity=0.172  Sum_probs=90.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc-ccc-------ChhHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA-KEL-------NNDLRADIIS   73 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~-------~~~~~~~~l~   73 (424)
                      +.|.|+|.+|+|||.+++++.+..  ..+   -+|+++-...+...+.++|+.+.+..+ +..       ...+....+.
T Consensus        31 S~~~iyG~sgTGKT~~~r~~l~~~--n~~---~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~  105 (438)
T KOG2543|consen   31 SIVHIYGHSGTGKTYLVRQLLRKL--NLE---NVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLV  105 (438)
T ss_pred             eeEEEeccCCCchhHHHHHHHhhc--CCc---ceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHH
Confidence            356899999999999999999987  222   489999999999999999999996322 221       2222222333


Q ss_pred             H--Hh--ccCcEEEEEcCCCCcchhhhhccC--------CCCCCcEEEEEecc-hhhhc-----ccCceEEecCCCHHHH
Q 037045           74 K--EL--NDRSYVLFLDGVSSEINFKEIGMH--------DDHGRGKVVFACRS-REFCW-----QADGVIHVQQLCQREA  135 (424)
Q Consensus        74 ~--~l--~~~~~LlvlD~~~~~~~~~~~~~~--------~~~~~~~iiittr~-~~~~~-----~~~~~~~l~~l~~~~~  135 (424)
                      +  ..  +++.++||+||++...|++...++        -..+...|+...-. +....     ....++.....+.+|.
T Consensus       106 q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~  185 (438)
T KOG2543|consen  106 QWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEET  185 (438)
T ss_pred             hhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHH
Confidence            2  11  135799999999988776665333        22333433332221 11111     4556677888999999


Q ss_pred             HHHHHHHh
Q 037045          136 KKLFWEVV  143 (424)
Q Consensus       136 ~~l~~~~~  143 (424)
                      .+++.+.-
T Consensus       186 ~~Il~~~~  193 (438)
T KOG2543|consen  186 QVILSRDN  193 (438)
T ss_pred             HHHHhcCC
Confidence            99886643

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.25  E-value=4.3e-05  Score=74.42  Aligned_cols=152  Identities=16%  Similarity=0.159  Sum_probs=91.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccC-------------------CCCceEEEEEeccCCCHHHHHHHHHHHhccccccc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGES-------------------RRFDIIFWENINTDGNIRDIQEIILERLKVNAKEL   63 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~   63 (424)
                      -+.++|+.|+||||+|+.+++...-.                   ..+.-++.++.......+++. .+.......    
T Consensus        37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR-~Iie~~~~~----  111 (491)
T PRK14964         37 SILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIK-VILENSCYL----  111 (491)
T ss_pred             eEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHH-HHHHHHHhc----
Confidence            46789999999999999998754100                   111123444444333333322 222211100    


Q ss_pred             ChhHHHHHHHHHhccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEec-chhhhc---ccCceEEecCCCHHHH
Q 037045           64 NNDLRADIISKELNDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACR-SREFCW---QADGVIHVQQLCQREA  135 (424)
Q Consensus        64 ~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr-~~~~~~---~~~~~~~l~~l~~~~~  135 (424)
                                 -+.++.-++|+|+++....  .+.+  .+-.....+++|++|. ...+..   .....+++..++.++.
T Consensus       112 -----------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el  180 (491)
T PRK14964        112 -----------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKL  180 (491)
T ss_pred             -----------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHH
Confidence                       0124566899999987643  3333  1112224456665554 334333   7788899999999999


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~  172 (424)
                      .+.+.+.+....  ....++.+..|++.++|.+..+.
T Consensus       181 ~~~L~~ia~~Eg--i~i~~eAL~lIa~~s~GslR~al  215 (491)
T PRK14964        181 VEHLVDIAKKEN--IEHDEESLKLIAENSSGSMRNAL  215 (491)
T ss_pred             HHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence            999998886652  23345667889999999886443

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.23  E-value=5.5e-05  Score=73.91  Aligned_cols=158  Identities=18%  Similarity=0.186  Sum_probs=89.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCC-------------------CceEEEEEeccCCCHHHHHHHHHHHhccccccc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRR-------------------FDIIFWENINTDGNIRDIQEIILERLKVNAKEL   63 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~   63 (424)
                      .+.++|++|+||||+|+.+++...-...                   +..+..++.......+++. ++......     
T Consensus        38 ~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR-~i~~~~~~-----  111 (472)
T PRK14962         38 AYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIR-KIRDAVGY-----  111 (472)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHH-HHHHHHhh-----
Confidence            4678999999999999999987632110                   1112233332222222221 22221110     


Q ss_pred             ChhHHHHHHHHHhccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecc-hhhhc---ccCceEEecCCCHHHH
Q 037045           64 NNDLRADIISKELNDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRS-REFCW---QADGVIHVQQLCQREA  135 (424)
Q Consensus        64 ~~~~~~~~l~~~l~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~-~~~~~---~~~~~~~l~~l~~~~~  135 (424)
                                .-..+++-++|+|+++...  ..+.+  .+........+|++|.+ ..+.+   .....+++.+++.++.
T Consensus       112 ----------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el  181 (472)
T PRK14962        112 ----------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELI  181 (472)
T ss_pred             ----------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHH
Confidence                      0012456799999998753  23333  11122233444444443 33333   6677899999999999


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCCc-hHHHHHHHHHH
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGM-PYMLKLIGKEL  178 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~-Plai~~~a~~l  178 (424)
                      ...+.+.+....  ....++....|++.++|. +.++..+....
T Consensus       182 ~~~L~~i~~~eg--i~i~~eal~~Ia~~s~GdlR~aln~Le~l~  223 (472)
T PRK14962        182 IKRLQEVAEAEG--IEIDREALSFIAKRASGGLRDALTMLEQVW  223 (472)
T ss_pred             HHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            999988875431  223356678899877655 56666665543

>TIGR00767 rho transcription termination factor Rho

Probab=98.23  E-value=3.9e-06  Score=78.56  Aligned_cols=88  Identities=13%  Similarity=0.202  Sum_probs=60.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC--CCHHHHHHHHHHHhcccccccChhH---H----HHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD--GNIRDIQEIILERLKVNAKELNNDL---R----ADIIS   73 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~---~----~~~l~   73 (424)
                      .++|+|++|+|||||++.+++... ..+|+..+|+.+...  .++.++++.+...+-......+...   .    .....
T Consensus       170 ~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae  248 (415)
T TIGR00767       170 RGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAK  248 (415)
T ss_pred             EEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHH
Confidence            589999999999999999999885 347998889988755  7899999998544332221111111   1    11111


Q ss_pred             HH-hccCcEEEEEcCCCCc
Q 037045           74 KE-LNDRSYVLFLDGVSSE   91 (424)
Q Consensus        74 ~~-l~~~~~LlvlD~~~~~   91 (424)
                      .. -.+++++|++|++...
T Consensus       249 ~~~~~GkdVVLlIDEitR~  267 (415)
T TIGR00767       249 RLVEHKKDVVILLDSITRL  267 (415)
T ss_pred             HHHHcCCCeEEEEEChhHH
Confidence            11 2468999999999864

Members of this family differ in the specificity of RNA binding.

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=98.22  E-value=5.7e-05  Score=70.43  Aligned_cols=148  Identities=16%  Similarity=0.182  Sum_probs=91.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc----cCCCCceEEEEE-eccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG----ESRRFDIIFWEN-INTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN   77 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~----~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~   77 (424)
                      ...++|+.|+||||+|+.+++...    ...++|...|.. -+.....+++ +++...+...               -..
T Consensus        28 a~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~~~~~~~---------------p~~   91 (313)
T PRK05564         28 AHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNIIEEVNKK---------------PYE   91 (313)
T ss_pred             eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHHHHHhcC---------------ccc
Confidence            467899999999999999998752    234566555544 2223333332 2232322211               012


Q ss_pred             cCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045           78 DRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKK  149 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~  149 (424)
                      +++-++|+|+++...  .++.+  .+.....++.+|++|.+.....    +....+++.++++++..+.+.+....    
T Consensus        92 ~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~----  167 (313)
T PRK05564         92 GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND----  167 (313)
T ss_pred             CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC----
Confidence            456678888877653  34444  1223345677777776544332    67789999999999998888765421    


Q ss_pred             CccHHHHHHHHHHhcCCchHHHH
Q 037045          150 YPDIELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       150 ~~~~~~~~~~I~~~~~g~Plai~  172 (424)
                        ..++.+..++..++|.|..+.
T Consensus       168 --~~~~~~~~l~~~~~g~~~~a~  188 (313)
T PRK05564        168 --IKEEEKKSAIAFSDGIPGKVE  188 (313)
T ss_pred             --CCHHHHHHHHHHcCCCHHHHH
Confidence              113446778999999886543

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=98.22  E-value=5.1e-05  Score=71.56  Aligned_cols=194  Identities=11%  Similarity=0.093  Sum_probs=115.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCc--eEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFD--IIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDR   79 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~   79 (424)
                      ..+.|||+.|.|||.|++.+++...  ....  .+++      .+.+++..++...+..        .....+++..  .
T Consensus       114 nplfi~G~~GlGKTHLl~Aign~~~--~~~~~a~v~y------~~se~f~~~~v~a~~~--------~~~~~Fk~~y--~  175 (408)
T COG0593         114 NPLFIYGGVGLGKTHLLQAIGNEAL--ANGPNARVVY------LTSEDFTNDFVKALRD--------NEMEKFKEKY--S  175 (408)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHH--hhCCCceEEe------ccHHHHHHHHHHHHHh--------hhHHHHHHhh--c
Confidence            3588999999999999999999984  3332  4555      3455556555555442        2244555555  3


Q ss_pred             cEEEEEcCCCCcch---hhhhccC----CCCCCcEEEEEecchhhhc-----------ccCceEEecCCCHHHHHHHHHH
Q 037045           80 SYVLFLDGVSSEIN---FKEIGMH----DDHGRGKVVFACRSREFCW-----------QADGVIHVQQLCQREAKKLFWE  141 (424)
Q Consensus        80 ~~LlvlD~~~~~~~---~~~~~~~----~~~~~~~iiittr~~~~~~-----------~~~~~~~l~~l~~~~~~~l~~~  141 (424)
                      -=++++||++....   +++..|.    -...|..||+|++......           .....+++++.+.+....++.+
T Consensus       176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k  255 (408)
T COG0593         176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK  255 (408)
T ss_pred             cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence            33889999886432   1222122    2334448888885322111           6678899999999999999998


Q ss_pred             HhcccCCCCccHHHHHHHHHHhcCCchHHHHHHH----HHHhC---CcchHHHHHHHHHhhhcCcccccchhhhhHHHhh
Q 037045          142 VVGVHLKKYPDIELVADSIVKECGGMPYMLKLIG----KELAN---QSEVAIWRATADELRLTSSEEKKELEEVDRFFTL  214 (424)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a----~~l~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~  214 (424)
                      .+...  .....+++...|++.....-..+..+.    .+-..   .-+.+..+..+..+.. ...+ -..+.|+.++.-
T Consensus       256 ka~~~--~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~-~~~~-itie~I~~~Va~  331 (408)
T COG0593         256 KAEDR--GIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLR-AGEK-ITIEDIQKIVAE  331 (408)
T ss_pred             HHHhc--CCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhc-cccc-CCHHHHHHHHHH
Confidence            76544  122224455566665555433333222    22111   1345666666666666 2223 444677776666


Q ss_pred             hhc
Q 037045          215 VYK  217 (424)
Q Consensus       215 s~~  217 (424)
                      .|+
T Consensus       332 ~y~  334 (408)
T COG0593         332 YYN  334 (408)
T ss_pred             HhC
Confidence            554

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.21  E-value=3.8e-05  Score=77.05  Aligned_cols=95  Identities=8%  Similarity=0.032  Sum_probs=62.3

Q ss_pred             cCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045           78 DRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK  149 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~  149 (424)
                      +++-++|||+++....  .+.+  .+-.....+++|++|.... +..   +....+.+..++.++..+.+.+.+....  
T Consensus       118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg--  195 (709)
T PRK08691        118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK--  195 (709)
T ss_pred             CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC--
Confidence            4567999999987643  2222  1112234556666665433 222   6667788889999999999998886542  


Q ss_pred             CccHHHHHHHHHHhcCCchHHHHHH
Q 037045          150 YPDIELVADSIVKECGGMPYMLKLI  174 (424)
Q Consensus       150 ~~~~~~~~~~I~~~~~g~Plai~~~  174 (424)
                      ....++.+..|++.++|.+..+...
T Consensus       196 i~id~eAL~~Ia~~A~GslRdAlnL  220 (709)
T PRK08691        196 IAYEPPALQLLGRAAAGSMRDALSL  220 (709)
T ss_pred             CCcCHHHHHHHHHHhCCCHHHHHHH
Confidence            2334567889999999988554433

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.19  E-value=3e-05  Score=74.29  Aligned_cols=144  Identities=13%  Similarity=0.219  Sum_probs=78.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -|.++|++|+|||++|+.+++...  ..     |+.+..    .++.    ....    ..........+...-...+++
T Consensus       167 gvLL~GppGtGKT~lAkaia~~~~--~~-----~i~v~~----~~l~----~~~~----g~~~~~i~~~f~~a~~~~p~I  227 (389)
T PRK03992        167 GVLLYGPPGTGKTLLAKAVAHETN--AT-----FIRVVG----SELV----QKFI----GEGARLVRELFELAREKAPSI  227 (389)
T ss_pred             ceEEECCCCCChHHHHHHHHHHhC--CC-----EEEeeh----HHHh----Hhhc----cchHHHHHHHHHHHHhcCCeE
Confidence            378999999999999999999873  32     222211    1111    1100    001111111111111245789


Q ss_pred             EEEcCCCCcc------------h----hhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHH
Q 037045           83 LFLDGVSSEI------------N----FKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREA  135 (424)
Q Consensus        83 lvlD~~~~~~------------~----~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~  135 (424)
                      |+||+++...            .    +..+  .+.  ....+..||.||.......       ..+..+++...+.++.
T Consensus       228 lfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R  307 (389)
T PRK03992        228 IFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGR  307 (389)
T ss_pred             EEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHH
Confidence            9999998641            1    1111  011  1223456776776533322       2356799999999999


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      .++|+.+.........   .....+++.+.|+-
T Consensus       308 ~~Il~~~~~~~~~~~~---~~~~~la~~t~g~s  337 (389)
T PRK03992        308 LEILKIHTRKMNLADD---VDLEELAELTEGAS  337 (389)
T ss_pred             HHHHHHHhccCCCCCc---CCHHHHHHHcCCCC
Confidence            9999987754321111   12455777777653

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=98.18  E-value=6.1e-05  Score=75.71  Aligned_cols=160  Identities=15%  Similarity=0.120  Sum_probs=87.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcc-----cc-cccChhHHHHHHHH---
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKV-----NA-KELNNDLRADIISK---   74 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~~-~~~~~~~~~~~l~~---   74 (424)
                      +.++|+.|+||||+|+.+++...-...+.       ..++..-..++.|...-..     .. .....++....+..   
T Consensus        41 yLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~  113 (647)
T PRK07994         41 YLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQY  113 (647)
T ss_pred             EEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHh
Confidence            57899999999999999998763211100       0011111222222110000     00 00111111111111   


Q ss_pred             -HhccCcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcc
Q 037045           75 -ELNDRSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGV  145 (424)
Q Consensus        75 -~l~~~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~  145 (424)
                       -..++.-++|||+++....  .+.+ . +-.....+++|+ ||....+..   +....+.+.+++.++..+.+.+.+..
T Consensus       114 ~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~  193 (647)
T PRK07994        114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQA  193 (647)
T ss_pred             hhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHH
Confidence             1235667999999998642  3333 1 112223445554 444444433   66889999999999999999887754


Q ss_pred             cCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045          146 HLKKYPDIELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       146 ~~~~~~~~~~~~~~I~~~~~g~Plai~  172 (424)
                      ..  ....++....|++.++|.+....
T Consensus       194 e~--i~~e~~aL~~Ia~~s~Gs~R~Al  218 (647)
T PRK07994        194 EQ--IPFEPRALQLLARAADGSMRDAL  218 (647)
T ss_pred             cC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence            31  22234567889999999886443

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=98.17  E-value=0.00012  Score=69.64  Aligned_cols=154  Identities=12%  Similarity=0.128  Sum_probs=89.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCC--------------------CCceEEEEEeccCCCHHHHHHHHHHHhcccccc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESR--------------------RFDIIFWENINTDGNIRDIQEIILERLKVNAKE   62 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~   62 (424)
                      .+.++|+.|+||||+|+.+++...-..                    +++ +++++........+ .+++...+...   
T Consensus        38 ~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~-~~~l~~~~~~~---  112 (355)
T TIGR02397        38 AYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEIDAASNNGVDD-IREILDNVKYA---  112 (355)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEeeccccCCHHH-HHHHHHHHhcC---
Confidence            467899999999999999998863111                    122 22332221112111 12222221110   


Q ss_pred             cChhHHHHHHHHHhccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHH
Q 037045           63 LNNDLRADIISKELNDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQRE  134 (424)
Q Consensus        63 ~~~~~~~~~l~~~l~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~  134 (424)
                                  -+.+++-++|+|+++...  ..+.+  .+......+.+|++|.+.. +..   .....+++.++++++
T Consensus       113 ------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~  180 (355)
T TIGR02397       113 ------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLED  180 (355)
T ss_pred             ------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHH
Confidence                        012345588999997763  23333  1212223455666665443 222   556788999999999


Q ss_pred             HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045          135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIG  175 (424)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a  175 (424)
                      ..+.+...+....  ....++.+..+++.++|.|..+....
T Consensus       181 l~~~l~~~~~~~g--~~i~~~a~~~l~~~~~g~~~~a~~~l  219 (355)
T TIGR02397       181 IVERLKKILDKEG--IKIEDEALELIARAADGSLRDALSLL  219 (355)
T ss_pred             HHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCChHHHHHHH
Confidence            9999988775442  12235678889999999986665444

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.17  E-value=6.2e-05  Score=74.78  Aligned_cols=154  Identities=16%  Similarity=0.168  Sum_probs=88.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCC-------------------CCceEEEEEeccCCCHHHHHHHHHHHhccccccc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESR-------------------RFDIIFWENINTDGNIRDIQEIILERLKVNAKEL   63 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~   63 (424)
                      .+.++|+.|+||||+|+.+++...-..                   .|.-+++++.......+++ +++.......    
T Consensus        40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~i-r~l~~~~~~~----  114 (527)
T PRK14969         40 AYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAM-RELLDNAQYA----  114 (527)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHH-HHHHHHHhhC----
Confidence            357899999999999999998763111                   1111223322222122221 1222211100    


Q ss_pred             ChhHHHHHHHHHhccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEe-cchhhhc---ccCceEEecCCCHHHH
Q 037045           64 NNDLRADIISKELNDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFAC-RSREFCW---QADGVIHVQQLCQREA  135 (424)
Q Consensus        64 ~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiitt-r~~~~~~---~~~~~~~l~~l~~~~~  135 (424)
                                 -..+++-++|+|+++....  .+.+  .+-.....+.+|++| ....+..   +....+++..++.++.
T Consensus       115 -----------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i  183 (527)
T PRK14969        115 -----------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLI  183 (527)
T ss_pred             -----------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHH
Confidence                       0124567999999987643  3333  111222345555544 4333332   5577889999999999


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchH-HHHHH
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPY-MLKLI  174 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Pl-ai~~~  174 (424)
                      .+.+.+.+....  ....++.+..|++.++|.+. ++..+
T Consensus       184 ~~~L~~il~~eg--i~~~~~al~~la~~s~Gslr~al~ll  221 (527)
T PRK14969        184 VSHLQHILEQEN--IPFDATALQLLARAAAGSMRDALSLL  221 (527)
T ss_pred             HHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            998888775442  22335567889999999875 44443

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=98.16  E-value=7.4e-05  Score=71.24  Aligned_cols=86  Identities=8%  Similarity=0.033  Sum_probs=55.4

Q ss_pred             cCcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEEEEecc-hhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045           78 DRSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVVFACRS-REFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK  149 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~iiittr~-~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~  149 (424)
                      +++-++|||+++....  .+.+ . +-....++.+|++|.+ ..+.+   +....+.+..++.++..+.+.+..+.    
T Consensus       116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~----  191 (394)
T PRK07940        116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV----  191 (394)
T ss_pred             CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC----
Confidence            4556899999998642  2222 1 1122334555555544 44443   66789999999999999888754321    


Q ss_pred             CccHHHHHHHHHHhcCCchHH
Q 037045          150 YPDIELVADSIVKECGGMPYM  170 (424)
Q Consensus       150 ~~~~~~~~~~I~~~~~g~Pla  170 (424)
                         .++.+..+++.++|.|..
T Consensus       192 ---~~~~a~~la~~s~G~~~~  209 (394)
T PRK07940        192 ---DPETARRAARASQGHIGR  209 (394)
T ss_pred             ---CHHHHHHHHHHcCCCHHH
Confidence               134577899999999853

>COG3899 Predicted ATPase [General function prediction only]

Probab=98.13  E-value=5.8e-05  Score=79.17  Aligned_cols=111  Identities=14%  Similarity=0.224  Sum_probs=81.7

Q ss_pred             ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCC------cchHHHHHHHHH
Q 037045          120 QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQ------SEVAIWRATADE  193 (424)
Q Consensus       120 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~------~~~~~~~~~~~~  193 (424)
                      .....+.+.+|+..+...+........   .....+....|+++..|+|+.+..+...+.+.      .+...|..-...
T Consensus       209 ~~i~~I~L~PL~~~d~~~lV~~~l~~~---~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~  285 (849)
T COG3899         209 TNITTITLAPLSRADTNQLVAATLGCT---KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS  285 (849)
T ss_pred             CceeEEecCcCchhhHHHHHHHHhCCc---ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh
Confidence            667889999999999999999988763   22334567889999999999999999888774      344445433222


Q ss_pred             hhhcCcccccchhhhhHHHhhhhccCCcchHhHHhhhhhccCCCC
Q 037045          194 LRLTSSEEKKELEEVDRFFTLVYKNLSLEQQHCLLGWAIFSTGLE  238 (424)
Q Consensus       194 l~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~fp~~~~  238 (424)
                      +..     .+..+.+...+....+.||...|+++...|++...++
T Consensus       286 i~~-----~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~F~  325 (849)
T COG3899         286 LGI-----LATTDAVVEFLAARLQKLPGTTREVLKAAACIGNRFD  325 (849)
T ss_pred             cCC-----chhhHHHHHHHHHHHhcCCHHHHHHHHHHHHhCccCC
Confidence            222     1111345557888999999999999999999876554

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.13  E-value=4.7e-05  Score=73.30  Aligned_cols=168  Identities=13%  Similarity=0.077  Sum_probs=89.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE-eccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHHh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN-INTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKEL   76 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~l   76 (424)
                      +.++|+.|+||||+|+.+++...-....+..-|.. ...++..-...+.+......+.      .....++.. .+.+.+
T Consensus        41 ~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir-~l~~~~  119 (397)
T PRK14955         41 YIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIR-LLRENV  119 (397)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHH-HHHHHH
Confidence            66899999999999999998774211111100100 0001111111222211111100      001112211 122222


Q ss_pred             -----ccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEe-cchhhhc---ccCceEEecCCCHHHHHHHHHHHh
Q 037045           77 -----NDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFAC-RSREFCW---QADGVIHVQQLCQREAKKLFWEVV  143 (424)
Q Consensus        77 -----~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiitt-r~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~  143 (424)
                           .+.+-++|+|+++...  .++.+  .+......+.+|++| +...+..   .....+++.++++++..+.+...+
T Consensus       120 ~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~  199 (397)
T PRK14955        120 RYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGIC  199 (397)
T ss_pred             hhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence                 2355689999998764  34444  122223355555544 4444433   456688999999999998888877


Q ss_pred             cccCCCCccHHHHHHHHHHhcCCchHHHHHH
Q 037045          144 GVHLKKYPDIELVADSIVKECGGMPYMLKLI  174 (424)
Q Consensus       144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~  174 (424)
                      ...  .....++.+..|++.++|.+..+...
T Consensus       200 ~~~--g~~i~~~al~~l~~~s~g~lr~a~~~  228 (397)
T PRK14955        200 EAE--GISVDADALQLIGRKAQGSMRDAQSI  228 (397)
T ss_pred             HHc--CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            543  22334667889999999988654443

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.13  E-value=2.1e-05  Score=71.25  Aligned_cols=127  Identities=19%  Similarity=0.157  Sum_probs=66.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc-cCcE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN-DRSY   81 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~   81 (424)
                      -+.++|++|+||||+|+.+++.......-....++.+...    ++...   .++         +....+.+.+. ....
T Consensus        44 ~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~~---~~g---------~~~~~~~~~~~~a~~~  107 (261)
T TIGR02881        44 HMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVGE---YIG---------HTAQKTREVIKKALGG  107 (261)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhhh---hcc---------chHHHHHHHHHhccCC
Confidence            3679999999999999999987531111111112222221    11111   000         00111122221 1245


Q ss_pred             EEEEcCCCCcc----------hhhhh--ccCCCCCCcEEEEEecchhh----------hcccCceEEecCCCHHHHHHHH
Q 037045           82 VLFLDGVSSEI----------NFKEI--GMHDDHGRGKVVFACRSREF----------CWQADGVIHVQQLCQREAKKLF  139 (424)
Q Consensus        82 LlvlD~~~~~~----------~~~~~--~~~~~~~~~~iiittr~~~~----------~~~~~~~~~l~~l~~~~~~~l~  139 (424)
                      +|++|+++...          .++.+  .+........+|+++.....          .......+++++++.++..+++
T Consensus       108 VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il  187 (261)
T TIGR02881       108 VLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIA  187 (261)
T ss_pred             EEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHH
Confidence            89999998632          22333  11122233345555543322          1133456899999999999999


Q ss_pred             HHHhcc
Q 037045          140 WEVVGV  145 (424)
Q Consensus       140 ~~~~~~  145 (424)
                      .+.+..
T Consensus       188 ~~~~~~  193 (261)
T TIGR02881       188 ERMVKE  193 (261)
T ss_pred             HHHHHH
Confidence            888754

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.12  E-value=0.00012  Score=73.41  Aligned_cols=93  Identities=12%  Similarity=0.078  Sum_probs=61.0

Q ss_pred             CcEEEEEcCCCCcc--hhhhh-c-cCCCCCCcEEEEEe-cchhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCCC
Q 037045           79 RSYVLFLDGVSSEI--NFKEI-G-MHDDHGRGKVVFAC-RSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKKY  150 (424)
Q Consensus        79 ~~~LlvlD~~~~~~--~~~~~-~-~~~~~~~~~iiitt-r~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~  150 (424)
                      +.-++|||+++...  .++.+ . +-.....+++|++| ....+..   +....+++..++.++..+.+.+.+....  .
T Consensus       124 ~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg--i  201 (618)
T PRK14951        124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN--V  201 (618)
T ss_pred             CceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC--C
Confidence            44589999999864  23333 1 11222345566555 4333333   7788999999999999999988876542  2


Q ss_pred             ccHHHHHHHHHHhcCCchHHHHH
Q 037045          151 PDIELVADSIVKECGGMPYMLKL  173 (424)
Q Consensus       151 ~~~~~~~~~I~~~~~g~Plai~~  173 (424)
                      ...++.+..|++.++|.+..+..
T Consensus       202 ~ie~~AL~~La~~s~GslR~al~  224 (618)
T PRK14951        202 PAEPQALRLLARAARGSMRDALS  224 (618)
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHH
Confidence            23355678899999998754443

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.12  E-value=0.0001  Score=73.55  Aligned_cols=166  Identities=17%  Similarity=0.160  Sum_probs=91.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH-
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE-   75 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~-   75 (424)
                      .+.++|+.|+||||+|+.+++...-....+.       ..++.-...+.+........      .....++ +..+.+. 
T Consensus        40 a~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~-iR~L~~~~  111 (624)
T PRK14959         40 AYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDD-AKRLKEAI  111 (624)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcCCCCceEEEecccccCHHH-HHHHHHHH
Confidence            4668999999999999999988742111110       01111111222211110000      0001111 1112111 


Q ss_pred             ----hccCcEEEEEcCCCCcc--hhhhh-ccC-CCCCCcEEEEEecc-hhhhc---ccCceEEecCCCHHHHHHHHHHHh
Q 037045           76 ----LNDRSYVLFLDGVSSEI--NFKEI-GMH-DDHGRGKVVFACRS-REFCW---QADGVIHVQQLCQREAKKLFWEVV  143 (424)
Q Consensus        76 ----l~~~~~LlvlD~~~~~~--~~~~~-~~~-~~~~~~~iiittr~-~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~  143 (424)
                          ..+++-++|||+++...  ..+.+ ... .......+|++|.. ..+..   .....+++..++.++..+.+.+.+
T Consensus       112 ~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il  191 (624)
T PRK14959        112 GYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVL  191 (624)
T ss_pred             HhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHH
Confidence                13456799999998763  23333 111 22234555555544 33332   556788999999999999998877


Q ss_pred             cccCCCCccHHHHHHHHHHhcCCch-HHHHHHHHHH
Q 037045          144 GVHLKKYPDIELVADSIVKECGGMP-YMLKLIGKEL  178 (424)
Q Consensus       144 ~~~~~~~~~~~~~~~~I~~~~~g~P-lai~~~a~~l  178 (424)
                      ....  ....++.+..|++.++|.+ .++..+...+
T Consensus       192 ~~eg--i~id~eal~lIA~~s~GdlR~Al~lLeqll  225 (624)
T PRK14959        192 GREG--VDYDPAAVRLIARRAAGSVRDSMSLLGQVL  225 (624)
T ss_pred             HHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            5442  2234567888999999965 5666665443

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.11  E-value=9.3e-05  Score=73.10  Aligned_cols=152  Identities=17%  Similarity=0.169  Sum_probs=89.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCC-------------------CCceEEEEEeccCCCHHHHHHHHHHHhccccccc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESR-------------------RFDIIFWENINTDGNIRDIQEIILERLKVNAKEL   63 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~   63 (424)
                      .+.++|+.|+||||+|+.+++...-..                   .+.-++.++.......+++ +++...+...    
T Consensus        40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~i-R~l~~~~~~~----  114 (509)
T PRK14958         40 AYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDT-RELLDNIPYA----  114 (509)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHH-HHHHHHHhhc----
Confidence            357899999999999999998763111                   1111333333323333332 1222222111    


Q ss_pred             ChhHHHHHHHHHhccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEec-chhhhc---ccCceEEecCCCHHHH
Q 037045           64 NNDLRADIISKELNDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACR-SREFCW---QADGVIHVQQLCQREA  135 (424)
Q Consensus        64 ~~~~~~~~l~~~l~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr-~~~~~~---~~~~~~~l~~l~~~~~  135 (424)
                                 -..++.-++|||+++...  ..+.+  .+-.....+++|++|. ...+..   +....+++..++.++.
T Consensus       115 -----------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i  183 (509)
T PRK14958        115 -----------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQI  183 (509)
T ss_pred             -----------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHH
Confidence                       012455689999999763  23333  1112223466665544 333332   6677889999999998


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~  172 (424)
                      .+.+.+.+....  ....++....|++.++|.+..+.
T Consensus       184 ~~~l~~il~~eg--i~~~~~al~~ia~~s~GslR~al  218 (509)
T PRK14958        184 AAHCQHLLKEEN--VEFENAALDLLARAANGSVRDAL  218 (509)
T ss_pred             HHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHHHHH
Confidence            888887776542  22234567789999999885443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.09  E-value=1.4e-07  Score=92.28  Aligned_cols=121  Identities=19%  Similarity=0.119  Sum_probs=57.9

Q ss_pred             eEEEeeccCCCCCCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeeecccc
Q 037045          266 KRLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFLRSSC  343 (424)
Q Consensus       266 ~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l~~~~  343 (424)
                      ...+.+.|.+..+.. ..-++.|+.|++++|+++++..  +..++.|+.||+++|.+..+|.- ..+.. |+.|++  ++
T Consensus       167 ~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~--Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l--rn  241 (1096)
T KOG1859|consen  167 ATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDN--LRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL--RN  241 (1096)
T ss_pred             hhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHH--HHhcccccccccccchhccccccchhhhh-heeeee--cc
Confidence            334445555554332 2334455556666666555542  44555555556665555444431 11122 555555  45


Q ss_pred             cccccCChhhhccCCCCEEEecCCcCcccc--hhhhcCCCCCEeeeccccC
Q 037045          344 SLLLQLPAEIGRLQKLEILDVSHTKVQCLP--SEIGQLIELKYLRVSRVEN  392 (424)
Q Consensus       344 ~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~l~l~~n~~  392 (424)
                      |.+.++- .+-++.+|+.||+++|-+...-  ..++.+..|+.|.+.+|++
T Consensus       242 N~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 NALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            5544442 2444555555555555433211  1245555555555555543

>PRK08118 topology modulation protein; Reviewed

Probab=98.07  E-value=1.1e-05  Score=67.57  Aligned_cols=37  Identities=35%  Similarity=0.686  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccC-CCCceEEEE
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGES-RRFDIIFWE   37 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv   37 (424)
                      |+.|.|+|++|+||||||+.+++..... .+||.++|-
T Consensus         1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~   38 (167)
T PRK08118          1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK   38 (167)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence            5679999999999999999999998543 557778763

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=98.07  E-value=0.0001  Score=69.27  Aligned_cols=162  Identities=13%  Similarity=0.111  Sum_probs=90.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCC--CceEEEEEeccCCCHHHHHHHHHHH-------hccc--c------cccCh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRR--FDIIFWENINTDGNIRDIQEIILER-------LKVN--A------KELNN   65 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~-------l~~~--~------~~~~~   65 (424)
                      .+.|+|+.|+||||+|..+++...-...  +...   ....++......+.+...       +..+  .      .....
T Consensus        47 a~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~v  123 (351)
T PRK09112         47 ALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITV  123 (351)
T ss_pred             eEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCH
Confidence            4788999999999999999998742111  1111   011111111233333222       1000  0      11122


Q ss_pred             hHHHHHHHHHhc-----cCcEEEEEcCCCCcch--hhhh--ccCCCCCCcE-EEEEecchhhhc---ccCceEEecCCCH
Q 037045           66 DLRADIISKELN-----DRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGK-VVFACRSREFCW---QADGVIHVQQLCQ  132 (424)
Q Consensus        66 ~~~~~~l~~~l~-----~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~-iiittr~~~~~~---~~~~~~~l~~l~~  132 (424)
                      ++ +..+.+.+.     ++.-++|||+++....  .+.+  .+.....++. |++|++...+.+   +....+.+.+++.
T Consensus       124 d~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~  202 (351)
T PRK09112        124 DE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDD  202 (351)
T ss_pred             HH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCH
Confidence            22 223333332     3566999999998642  2222  1111122344 455555444434   7778999999999


Q ss_pred             HHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045          133 REAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~  172 (424)
                      ++..+++.+.....   . ..++.+..+++.++|.|....
T Consensus       203 ~~~~~~L~~~~~~~---~-~~~~~~~~i~~~s~G~pr~Al  238 (351)
T PRK09112        203 DELKKALSHLGSSQ---G-SDGEITEALLQRSKGSVRKAL  238 (351)
T ss_pred             HHHHHHHHHhhccc---C-CCHHHHHHHHHHcCCCHHHHH
Confidence            99999998743221   1 224557789999999997543

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=98.06  E-value=0.00017  Score=72.50  Aligned_cols=166  Identities=15%  Similarity=0.083  Sum_probs=91.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCC-c-eEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRF-D-IIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISK   74 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~   74 (424)
                      -+.++|+.|+||||+|+.+++...-.... . +..+-.++.    -...+.+...-....      .....++... +.+
T Consensus        48 a~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~----c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IRe-Iie  122 (598)
T PRK09111         48 AFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV----GEHCQAIMEGRHVDVLEMDAASHTGVDDIRE-IIE  122 (598)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc----cHHHHHHhcCCCCceEEecccccCCHHHHHH-HHH
Confidence            46789999999999999999876311111 0 001101111    111122221111100      1111222111 111


Q ss_pred             Hh-----ccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEe-cchhhhc---ccCceEEecCCCHHHHHHHHHH
Q 037045           75 EL-----NDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFAC-RSREFCW---QADGVIHVQQLCQREAKKLFWE  141 (424)
Q Consensus        75 ~l-----~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiitt-r~~~~~~---~~~~~~~l~~l~~~~~~~l~~~  141 (424)
                      ..     .+++-++|+|+++....  .+.+  .+-.....+++|++| ....+..   +....+++..++.++..+.+.+
T Consensus       123 ~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~  202 (598)
T PRK09111        123 SVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSR  202 (598)
T ss_pred             HHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHH
Confidence            11     23456899999987643  3333  111223356665555 4333333   6778899999999999999988


Q ss_pred             HhcccCCCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045          142 VVGVHLKKYPDIELVADSIVKECGGMPYMLKLIG  175 (424)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a  175 (424)
                      .+...  .....++.+..|++.++|.+..+....
T Consensus       203 i~~ke--gi~i~~eAl~lIa~~a~Gdlr~al~~L  234 (598)
T PRK09111        203 IAAKE--GVEVEDEALALIARAAEGSVRDGLSLL  234 (598)
T ss_pred             HHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            87654  222334677889999999986654444

>PTZ00202 tuzin; Provisional

Probab=98.06  E-value=0.00027  Score=66.77  Aligned_cols=132  Identities=14%  Similarity=0.141  Sum_probs=85.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-----
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-----   76 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-----   76 (424)
                      ++++|.|++|+|||||++.+.....     ...++++..   +..++++.++.+++.+.. ....++...+.+.+     
T Consensus       287 rivvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr---g~eElLr~LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~  357 (550)
T PTZ00202        287 RIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR---GTEDTLRSVVKALGVPNV-EACGDLLDFISEACRRAKK  357 (550)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC---CHHHHHHHHHHHcCCCCc-ccHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999997662     113333333   679999999999997442 22234444444433     


Q ss_pred             c-cCcEEEEEcCCCCcchhhhh-----ccCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHHHHHHHh
Q 037045           77 N-DRSYVLFLDGVSSEINFKEI-----GMHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKKLFWEVV  143 (424)
Q Consensus        77 ~-~~~~LlvlD~~~~~~~~~~~-----~~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~l~~~~~  143 (424)
                      . +++.+||+- +.+.+.+...     .+.....-|.|++----+....     +.-..|-+..|+.++|.++-++..
T Consensus       358 e~GrtPVLII~-lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~  434 (550)
T PTZ00202        358 MNGETPLLVLK-LREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI  434 (550)
T ss_pred             hCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence            2 456666664 3333332222     3336667788887554444433     444567788999999999987766

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.05  E-value=0.00026  Score=67.69  Aligned_cols=152  Identities=14%  Similarity=0.226  Sum_probs=86.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccC------CCCce-EEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGES------RRFDI-IFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKE   75 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~------~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~   75 (424)
                      .+.++|+.|+|||++|+.+++.....      ..|.. ++-++.......+++ .++..++...               -
T Consensus        41 ~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~l~~~~~~~---------------p  104 (367)
T PRK14970         41 ALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RNLIDQVRIP---------------P  104 (367)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HHHHHHHhhc---------------c
Confidence            57799999999999999998876321      11221 222221111122222 1222221100               0


Q ss_pred             hccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEec-chhhhc---ccCceEEecCCCHHHHHHHHHHHhcccC
Q 037045           76 LNDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACR-SREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHL  147 (424)
Q Consensus        76 l~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr-~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~  147 (424)
                      +.+++-++|+|+++....  ++.+  .+......+.+|+++. ......   .....+++.++++++....+.+.+....
T Consensus       105 ~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g  184 (367)
T PRK14970        105 QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEG  184 (367)
T ss_pred             ccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcC
Confidence            123455899999986532  3333  1112223445555553 323222   5566899999999999999888775542


Q ss_pred             CCCccHHHHHHHHHHhcCCchHHHH
Q 037045          148 KKYPDIELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       148 ~~~~~~~~~~~~I~~~~~g~Plai~  172 (424)
                        ....++.+..+++.++|.+..+.
T Consensus       185 --~~i~~~al~~l~~~~~gdlr~~~  207 (367)
T PRK14970        185 --IKFEDDALHIIAQKADGALRDAL  207 (367)
T ss_pred             --CCCCHHHHHHHHHhCCCCHHHHH
Confidence              22335678889999999775443

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.04  E-value=2.2e-05  Score=63.53  Aligned_cols=89  Identities=22%  Similarity=0.178  Sum_probs=52.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCc-
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRS-   80 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~-   80 (424)
                      +.+.|+|++|+||||+++.++....  .....+++++.+........... ...................+.+..+..+ 
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP   79 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence            4789999999999999999999884  32235677776654333222221 1111111122222222334444444444 


Q ss_pred             EEEEEcCCCCcch
Q 037045           81 YVLFLDGVSSEIN   93 (424)
Q Consensus        81 ~LlvlD~~~~~~~   93 (424)
                      .++++|+++....
T Consensus        80 ~viiiDei~~~~~   92 (148)
T smart00382       80 DVLILDEITSLLD   92 (148)
T ss_pred             CEEEEECCcccCC
Confidence            8999999988643

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.03  E-value=5.8e-07  Score=70.06  Aligned_cols=86  Identities=22%  Similarity=0.297  Sum_probs=40.4

Q ss_pred             ccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEecC
Q 037045          287 ILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSH  366 (424)
Q Consensus       287 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~  366 (424)
                      |+..++++|.+.++|+.+...++..+.|++++|.+.++|..+-.++.|+.+|+  +.|.+...|.-+..+.+|..|+..+
T Consensus        55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl--~~N~l~~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen   55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL--RFNPLNAEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc--ccCccccchHHHHHHHhHHHhcCCC
Confidence            44444444444444444333334444444444444444444444444555554  4444444444444444444444444


Q ss_pred             CcCcccch
Q 037045          367 TKVQCLPS  374 (424)
Q Consensus       367 ~~i~~lp~  374 (424)
                      |.+..+|-
T Consensus       133 na~~eid~  140 (177)
T KOG4579|consen  133 NARAEIDV  140 (177)
T ss_pred             CccccCcH
Confidence            44444443

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=98.02  E-value=0.00031  Score=69.21  Aligned_cols=96  Identities=9%  Similarity=0.039  Sum_probs=62.9

Q ss_pred             cCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecch-hhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045           78 DRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSR-EFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK  149 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~-~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~  149 (424)
                      +++-++|+|+++....  .+.+  .+-.....+.+|++|... .+..   .....+++.+++.++..+.+.+.+....  
T Consensus       116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG--  193 (535)
T PRK08451        116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG--  193 (535)
T ss_pred             CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC--
Confidence            3456899999987643  2333  111223456666666543 2222   6678999999999999999988776542  


Q ss_pred             CccHHHHHHHHHHhcCCchHHHHHHH
Q 037045          150 YPDIELVADSIVKECGGMPYMLKLIG  175 (424)
Q Consensus       150 ~~~~~~~~~~I~~~~~g~Plai~~~a  175 (424)
                      ....++.+..|++.++|.+..+....
T Consensus       194 i~i~~~Al~~Ia~~s~GdlR~alnlL  219 (535)
T PRK08451        194 VSYEPEALEILARSGNGSLRDTLTLL  219 (535)
T ss_pred             CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence            22335678899999999985554443

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=98.02  E-value=0.00014  Score=72.12  Aligned_cols=159  Identities=14%  Similarity=0.089  Sum_probs=84.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc---c---ccChhHHHHHHHHH-
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA---K---ELNNDLRADIISKE-   75 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~---~~~~~~~~~~l~~~-   75 (424)
                      .+.++|+.|+||||+|+.+++...-..      |... ..++....++.+........   +   ....++... +.+. 
T Consensus        40 A~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IRe-Ii~~~  111 (605)
T PRK05896         40 AYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRN-IIDNI  111 (605)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHHcCCCCceEEeccccccCHHHHHH-HHHHH
Confidence            467899999999999999998863111      1110 01111112222211110000   0   011111111 1111 


Q ss_pred             ----hccCcEEEEEcCCCCcc--hhhhh-c-cCCCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHHHHHHHHHHHh
Q 037045           76 ----LNDRSYVLFLDGVSSEI--NFKEI-G-MHDDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQREAKKLFWEVV  143 (424)
Q Consensus        76 ----l~~~~~LlvlD~~~~~~--~~~~~-~-~~~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~  143 (424)
                          ..+++-++|+|+++...  ..+.+ . +-.....+.+|+ |+....+..   .....+++.++++++....+.+.+
T Consensus       112 ~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il  191 (605)
T PRK05896        112 NYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIA  191 (605)
T ss_pred             HhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHH
Confidence                11234479999998753  23333 1 111222444444 444433332   667789999999999999998877


Q ss_pred             cccCCCCccHHHHHHHHHHhcCCchHHH
Q 037045          144 GVHLKKYPDIELVADSIVKECGGMPYML  171 (424)
Q Consensus       144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai  171 (424)
                      ....  ....++.+..+++.++|.+..+
T Consensus       192 ~keg--i~Is~eal~~La~lS~GdlR~A  217 (605)
T PRK05896        192 KKEK--IKIEDNAIDKIADLADGSLRDG  217 (605)
T ss_pred             HHcC--CCCCHHHHHHHHHHcCCcHHHH
Confidence            5431  1223556788999999977533

>TIGR03689 pup_AAA proteasome ATPase

Probab=98.02  E-value=0.00015  Score=70.99  Aligned_cols=134  Identities=17%  Similarity=0.243  Sum_probs=72.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCC---CCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-cc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESR---RFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-ND   78 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~   78 (424)
                      -+.++|++|+|||++|+.+++......   ......|+.+....    +....   .+.  ............++.. .+
T Consensus       218 GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e----Ll~ky---vGe--te~~ir~iF~~Ar~~a~~g  288 (512)
T TIGR03689       218 GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE----LLNKY---VGE--TERQIRLIFQRAREKASDG  288 (512)
T ss_pred             ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh----hcccc---cch--HHHHHHHHHHHHHHHhhcC
Confidence            378999999999999999999874211   11234455543321    11000   000  0000011111222211 24


Q ss_pred             CcEEEEEcCCCCcc---------hh-----hhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHH
Q 037045           79 RSYVLFLDGVSSEI---------NF-----KEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQR  133 (424)
Q Consensus        79 ~~~LlvlD~~~~~~---------~~-----~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~  133 (424)
                      ++++++||+++...         +.     ..+  .+.  ....+..||.||.......       .-+..++++..+.+
T Consensus       289 ~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e  368 (512)
T TIGR03689       289 RPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAE  368 (512)
T ss_pred             CCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHH
Confidence            68999999997531         11     122  011  1112334455554433322       33566899999999


Q ss_pred             HHHHHHHHHhcc
Q 037045          134 EAKKLFWEVVGV  145 (424)
Q Consensus       134 ~~~~l~~~~~~~  145 (424)
                      +..++|..+...
T Consensus       369 ~r~~Il~~~l~~  380 (512)
T TIGR03689       369 AAADIFSKYLTD  380 (512)
T ss_pred             HHHHHHHHHhhc
Confidence            999999998754

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>CHL00181 cbbX CbbX; Provisional

Probab=98.02  E-value=0.00025  Score=64.95  Aligned_cols=128  Identities=13%  Similarity=0.110  Sum_probs=70.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL   83 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll   83 (424)
                      +.++|++|+|||++|+.+++.......-...-|+.++    ..++....   .+..     .......+.+   ...-+|
T Consensus        62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l~~~~---~g~~-----~~~~~~~l~~---a~ggVL  126 (287)
T CHL00181         62 MSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDLVGQY---IGHT-----APKTKEVLKK---AMGGVL  126 (287)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHHHHHH---hccc-----hHHHHHHHHH---ccCCEE
Confidence            6789999999999999998876321111111133333    11222111   1111     1111112222   123599


Q ss_pred             EEcCCCCc-----------chhhhh--ccCCCCCCcEEEEEecchhhh----------cccCceEEecCCCHHHHHHHHH
Q 037045           84 FLDGVSSE-----------INFKEI--GMHDDHGRGKVVFACRSREFC----------WQADGVIHVQQLCQREAKKLFW  140 (424)
Q Consensus        84 vlD~~~~~-----------~~~~~~--~~~~~~~~~~iiittr~~~~~----------~~~~~~~~l~~l~~~~~~~l~~  140 (424)
                      +||+++..           +..+.+  .+.....+..||+++....+.          ..-...+++++++.+|..+++.
T Consensus       127 fIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~  206 (287)
T CHL00181        127 FIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAK  206 (287)
T ss_pred             EEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHH
Confidence            99999753           112222  112333456676776533321          1456689999999999999998


Q ss_pred             HHhccc
Q 037045          141 EVVGVH  146 (424)
Q Consensus       141 ~~~~~~  146 (424)
                      ..+...
T Consensus       207 ~~l~~~  212 (287)
T CHL00181        207 IMLEEQ  212 (287)
T ss_pred             HHHHHh
Confidence            887543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.01  E-value=8.6e-07  Score=69.13  Aligned_cols=104  Identities=17%  Similarity=0.255  Sum_probs=85.9

Q ss_pred             ccEEEccCCCCCCCChHH--hcccCCCcEEEccCCCCCcCChhhhc-ccccceeeecccccccccCChhhhccCCCCEEE
Q 037045          287 ILTLILEGKRLEKLPTSF--FDYMCHLQLLDLHETNIGCLPPSISR-LINLNALFLRSSCSLLLQLPAEIGRLQKLEILD  363 (424)
Q Consensus       287 L~~L~l~~~~l~~~~~~~--~~~~~~L~~L~l~~~~~~~~p~~~~~-l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~  363 (424)
                      +-.+++++|.+..++...  +.....|..+++++|.+.++|+.|.. ++.++++|+  .++.+.++|..+..++.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl--~~neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNL--ANNEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhc--chhhhhhchHHHhhhHHhhhcc
Confidence            445677777776554432  23345677789999999999988864 568999999  9999999999999999999999


Q ss_pred             ecCCcCcccchhhhcCCCCCEeeeccccC
Q 037045          364 VSHTKVQCLPSEIGQLIELKYLRVSRVEN  392 (424)
Q Consensus       364 l~~~~i~~lp~~i~~l~~L~~l~l~~n~~  392 (424)
                      +++|++...|.-+..+.+|..|+...|..
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCCcc
Confidence            99999999998888899999999888853

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.00  E-value=0.00026  Score=71.27  Aligned_cols=165  Identities=12%  Similarity=0.049  Sum_probs=87.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE-eccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN-INTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      -+.++|+.|+||||+|+.+++...-....+.-.|.. ....+..-...+.+...-..+.      .....++... +.+.
T Consensus        40 a~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~-l~e~  118 (620)
T PRK14954         40 GYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQ-LREN  118 (620)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHH-HHHH
Confidence            367899999999999999998874211111011110 0011111122222211111110      0011122222 1122


Q ss_pred             h-----ccCcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEE-EEecchhhhc---ccCceEEecCCCHHHHHHHHHHH
Q 037045           76 L-----NDRSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVV-FACRSREFCW---QADGVIHVQQLCQREAKKLFWEV  142 (424)
Q Consensus        76 l-----~~~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~ii-ittr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~  142 (424)
                      +     .+.+-++|+|+++....  .+.+ . +-.-...+.+| +|++...+..   .....+++..++.++..+.+.+.
T Consensus       119 ~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i  198 (620)
T PRK14954        119 VRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMI  198 (620)
T ss_pred             HHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHH
Confidence            2     24456889999987643  3333 1 11222334444 4444444433   67889999999999998888877


Q ss_pred             hcccCCCCccHHHHHHHHHHhcCCchHH
Q 037045          143 VGVHLKKYPDIELVADSIVKECGGMPYM  170 (424)
Q Consensus       143 ~~~~~~~~~~~~~~~~~I~~~~~g~Pla  170 (424)
                      +...  .....++.+..|++.++|..-.
T Consensus       199 ~~~e--gi~I~~eal~~La~~s~Gdlr~  224 (620)
T PRK14954        199 CRAE--GIQIDADALQLIARKAQGSMRD  224 (620)
T ss_pred             HHHc--CCCCCHHHHHHHHHHhCCCHHH
Confidence            6543  1223356788899999996653

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.00  E-value=1.2e-05  Score=64.53  Aligned_cols=22  Identities=41%  Similarity=0.687  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.|+|++|+|||++|+.+++..
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6799999999999999999998

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.00  E-value=0.00012  Score=70.01  Aligned_cols=145  Identities=18%  Similarity=0.253  Sum_probs=79.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +-+.++|++|+|||++|+.+++..  ...|   +.+..      ..+...   ..+     .........+.......++
T Consensus       180 kgvLL~GppGTGKT~LAkalA~~l--~~~f---i~i~~------s~l~~k---~~g-----e~~~~lr~lf~~A~~~~P~  240 (398)
T PTZ00454        180 RGVLLYGPPGTGKTMLAKAVAHHT--TATF---IRVVG------SEFVQK---YLG-----EGPRMVRDVFRLARENAPS  240 (398)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhc--CCCE---EEEeh------HHHHHH---hcc-----hhHHHHHHHHHHHHhcCCe
Confidence            347899999999999999999976  3333   12211      111111   011     0111111222222235689


Q ss_pred             EEEEcCCCCcc------------h----hhhh-c-cC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHH
Q 037045           82 VLFLDGVSSEI------------N----FKEI-G-MH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQRE  134 (424)
Q Consensus        82 LlvlD~~~~~~------------~----~~~~-~-~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~  134 (424)
                      +|+||+++...            .    +..+ . +-  ....+..+|.||.......       ..+..+++...+.++
T Consensus       241 ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~  320 (398)
T PTZ00454        241 IIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ  320 (398)
T ss_pred             EEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHH
Confidence            99999977431            1    1111 0 00  1224557777777544333       345678898889999


Q ss_pred             HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      ..++|+..........   +....++++.+.|+-
T Consensus       321 R~~Il~~~~~~~~l~~---dvd~~~la~~t~g~s  351 (398)
T PTZ00454        321 KRLIFQTITSKMNLSE---EVDLEDFVSRPEKIS  351 (398)
T ss_pred             HHHHHHHHHhcCCCCc---ccCHHHHHHHcCCCC
Confidence            8888887765431111   112445677776653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.99  E-value=1e-05  Score=67.44  Aligned_cols=103  Identities=19%  Similarity=0.303  Sum_probs=66.8

Q ss_pred             cCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChhhhc-cCCCCEEEecCCcCcccch--hhhcCCCCCE
Q 037045          308 MCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGR-LQKLEILDVSHTKVQCLPS--EIGQLIELKY  384 (424)
Q Consensus       308 ~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~-l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~  384 (424)
                      ..+...+|+++|.+..++ .+..++.|.+|.+  ++|++.++-+.++. +++|..|.+.+|+++.+.+  .+..+++|++
T Consensus        41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll--~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLL--NNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchhhcc-cCCCccccceEEe--cCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            345666777777664442 2455777777777  77777777555543 4567777777777665432  3667777888


Q ss_pred             eeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          385 LRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       385 l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      |.+-+|+..         .........+.++++|++||
T Consensus       118 Ltll~Npv~---------~k~~YR~yvl~klp~l~~LD  146 (233)
T KOG1644|consen  118 LTLLGNPVE---------HKKNYRLYVLYKLPSLRTLD  146 (233)
T ss_pred             eeecCCchh---------cccCceeEEEEecCcceEee
Confidence            877777542         23456666777777777776

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=97.97  E-value=0.00025  Score=71.92  Aligned_cols=93  Identities=8%  Similarity=-0.014  Sum_probs=59.0

Q ss_pred             cCcEEEEEcCCCCcc--hhhhh-ccC-CCCCCcE-EEEEecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045           78 DRSYVLFLDGVSSEI--NFKEI-GMH-DDHGRGK-VVFACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK  149 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~--~~~~~-~~~-~~~~~~~-iiittr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~  149 (424)
                      +++-++|+|+++...  .+..+ ... .....+. |++|++...+..   .....+++.+++.++..+.+...+....  
T Consensus       117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg--  194 (725)
T PRK07133        117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN--  194 (725)
T ss_pred             CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC--
Confidence            456699999998763  33333 111 1122344 445555544443   6677999999999999988887765431  


Q ss_pred             CccHHHHHHHHHHhcCCchHHHH
Q 037045          150 YPDIELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       150 ~~~~~~~~~~I~~~~~g~Plai~  172 (424)
                      ....++.+..|++.++|.+..+.
T Consensus       195 I~id~eAl~~LA~lS~GslR~Al  217 (725)
T PRK07133        195 ISYEKNALKLIAKLSSGSLRDAL  217 (725)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHH
Confidence            22224567889999999775433

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=97.96  E-value=0.00034  Score=72.74  Aligned_cols=150  Identities=15%  Similarity=0.150  Sum_probs=86.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCC----------------------CceEEEEEeccCCCHHHHHHHHHHHhcccc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRR----------------------FDIIFWENINTDGNIRDIQEIILERLKVNA   60 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~----------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~   60 (424)
                      .+.++|+.|+||||+|+.+++...-...                      ++ +++++......++++. ++...+.   
T Consensus        39 a~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~eidaas~~~Vd~iR-~l~~~~~---  113 (824)
T PRK07764         39 AYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VTEIDAASHGGVDDAR-ELRERAF---  113 (824)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EEEecccccCCHHHHH-HHHHHHH---
Confidence            4678999999999999999988741111                      11 2222221111222221 1111110   


Q ss_pred             cccChhHHHHHHHHHhccCcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEEEEe-cchhhhc---ccCceEEecCCCH
Q 037045           61 KELNNDLRADIISKELNDRSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVVFAC-RSREFCW---QADGVIHVQQLCQ  132 (424)
Q Consensus        61 ~~~~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~iiitt-r~~~~~~---~~~~~~~l~~l~~  132 (424)
                                  ..-..++.-++|||+++.+..  .+.+ . +-.-...+.+|++| ....+..   +....+++..++.
T Consensus       114 ------------~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~  181 (824)
T PRK07764        114 ------------FAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPP  181 (824)
T ss_pred             ------------hchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCH
Confidence                        011234556899999998642  3333 1 11223455555554 4433433   6788999999999


Q ss_pred             HHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHH
Q 037045          133 REAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYML  171 (424)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai  171 (424)
                      ++..+.+.+.+....  .....+....|++.++|.+..+
T Consensus       182 ~~l~~~L~~il~~EG--v~id~eal~lLa~~sgGdlR~A  218 (824)
T PRK07764        182 EVMRGYLERICAQEG--VPVEPGVLPLVIRAGGGSVRDS  218 (824)
T ss_pred             HHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence            999999888765442  2223456678999999988443

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.95  E-value=0.00023  Score=62.49  Aligned_cols=35  Identities=34%  Similarity=0.553  Sum_probs=30.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEe
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENI   39 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~   39 (424)
                      -++|.|..|+||||++..+....  ...|+++++++-
T Consensus        15 r~viIG~sGSGKT~li~~lL~~~--~~~f~~I~l~t~   49 (241)
T PF04665_consen   15 RMVIIGKSGSGKTTLIKSLLYYL--RHKFDHIFLITP   49 (241)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh--cccCCEEEEEec
Confidence            36899999999999999999987  678888877653

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.95  E-value=0.0004  Score=69.48  Aligned_cols=95  Identities=12%  Similarity=0.114  Sum_probs=60.6

Q ss_pred             cCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEE-EEecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045           78 DRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVV-FACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK  149 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~ii-ittr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~  149 (424)
                      +++-++|||+++...  ..+.+  .+-.....+.+| +||....+..   +....+++..++.++..+.+.+.+....  
T Consensus       117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg--  194 (584)
T PRK14952        117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG--  194 (584)
T ss_pred             CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC--
Confidence            455689999998763  23333  111222344444 5555544443   6678999999999999999988776542  


Q ss_pred             CccHHHHHHHHHHhcCCchH-HHHHH
Q 037045          150 YPDIELVADSIVKECGGMPY-MLKLI  174 (424)
Q Consensus       150 ~~~~~~~~~~I~~~~~g~Pl-ai~~~  174 (424)
                      ....++.+..|++.++|.+. ++..+
T Consensus       195 i~i~~~al~~Ia~~s~GdlR~aln~L  220 (584)
T PRK14952        195 VVVDDAVYPLVIRAGGGSPRDTLSVL  220 (584)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            22235567889999999874 33333

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=0.00011  Score=65.74  Aligned_cols=81  Identities=21%  Similarity=0.272  Sum_probs=46.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhcc--CCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGE--SRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDR   79 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~   79 (424)
                      |+|.+|||+|+|||+|++.+++...+  .+.|....-+.++..        .++.... .+.........+.+.+...++
T Consensus       178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh--------sLFSKWF-sESgKlV~kmF~kI~ELv~d~  248 (423)
T KOG0744|consen  178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH--------SLFSKWF-SESGKLVAKMFQKIQELVEDR  248 (423)
T ss_pred             eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh--------HHHHHHH-hhhhhHHHHHHHHHHHHHhCC
Confidence            68999999999999999999999865  233332222332221        1111111 112223334445555556565


Q ss_pred             c--EEEEEcCCCCc
Q 037045           80 S--YVLFLDGVSSE   91 (424)
Q Consensus        80 ~--~LlvlD~~~~~   91 (424)
                      .  +.+.+|.|+..
T Consensus       249 ~~lVfvLIDEVESL  262 (423)
T KOG0744|consen  249 GNLVFVLIDEVESL  262 (423)
T ss_pred             CcEEEEEeHHHHHH
Confidence            4  45667888764

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.94  E-value=0.00037  Score=63.81  Aligned_cols=129  Identities=12%  Similarity=0.097  Sum_probs=69.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -+.++|++|+|||++|+.+++...........-++.++.    .++.    ..+....    .......+.+   ...-+
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~----~~~~g~~----~~~~~~~~~~---a~~gv  124 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLV----GQYIGHT----APKTKEILKR---AMGGV  124 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHh----Hhhcccc----hHHHHHHHHH---ccCcE
Confidence            377999999999999988887763222221112333332    1222    1111111    1111112222   13468


Q ss_pred             EEEcCCCCc-----------chhhhh--ccCCCCCCcEEEEEecchhhhc----------ccCceEEecCCCHHHHHHHH
Q 037045           83 LFLDGVSSE-----------INFKEI--GMHDDHGRGKVVFACRSREFCW----------QADGVIHVQQLCQREAKKLF  139 (424)
Q Consensus        83 lvlD~~~~~-----------~~~~~~--~~~~~~~~~~iiittr~~~~~~----------~~~~~~~l~~l~~~~~~~l~  139 (424)
                      |+||+++..           ...+.+  .+.....+..||.++.......          .....+++++++.+|..+++
T Consensus       125 L~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~  204 (284)
T TIGR02880       125 LFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIA  204 (284)
T ss_pred             EEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHH
Confidence            999999743           112222  1112334456666654322111          22567999999999999999


Q ss_pred             HHHhccc
Q 037045          140 WEVVGVH  146 (424)
Q Consensus       140 ~~~~~~~  146 (424)
                      .+.+...
T Consensus       205 ~~~l~~~  211 (284)
T TIGR02880       205 GLMLKEQ  211 (284)
T ss_pred             HHHHHHh
Confidence            8887543

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK07261 topology modulation protein; Provisional

Probab=97.93  E-value=4.6e-05  Score=64.19  Aligned_cols=34  Identities=29%  Similarity=0.445  Sum_probs=26.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhcc-CCCCceEEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGE-SRRFDIIFW   36 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~-~~~f~~~~w   36 (424)
                      .|+|+|++|+||||||++++..... .-+.|.+.|
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~   36 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF   36 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence            4899999999999999999987632 224455666

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=97.92  E-value=5.2e-05  Score=73.02  Aligned_cols=143  Identities=16%  Similarity=0.224  Sum_probs=77.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -+.|+|++|+|||++|+.+++..  ...|-   .+.  .. +   +...   ..+     .........+.......+++
T Consensus       219 gVLL~GPPGTGKT~LAraIA~el--~~~fi---~V~--~s-e---L~~k---~~G-----e~~~~vr~lF~~A~~~~P~I  279 (438)
T PTZ00361        219 GVILYGPPGTGKTLLAKAVANET--SATFL---RVV--GS-E---LIQK---YLG-----DGPKLVRELFRVAEENAPSI  279 (438)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh--CCCEE---EEe--cc-h---hhhh---hcc-----hHHHHHHHHHHHHHhCCCcE
Confidence            47899999999999999999987  34431   121  11 1   1110   000     00111111222222356789


Q ss_pred             EEEcCCCCcc------------h----hhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHH
Q 037045           83 LFLDGVSSEI------------N----FKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREA  135 (424)
Q Consensus        83 lvlD~~~~~~------------~----~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~  135 (424)
                      ++||+++...            .    +.++  .+-  ....+..||.||.......       ..+..+++...+.++.
T Consensus       280 LfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R  359 (438)
T PTZ00361        280 VFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTK  359 (438)
T ss_pred             EeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHH
Confidence            9999976421            0    1111  000  1233557777777544433       3456789999999999


Q ss_pred             HHHHHHHhcccC-CCCccHHHHHHHHHHhcCCch
Q 037045          136 KKLFWEVVGVHL-KKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       136 ~~l~~~~~~~~~-~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      .++|..+..+.. .....    ...++..+.|+-
T Consensus       360 ~~Il~~~~~k~~l~~dvd----l~~la~~t~g~s  389 (438)
T PTZ00361        360 RRIFEIHTSKMTLAEDVD----LEEFIMAKDELS  389 (438)
T ss_pred             HHHHHHHHhcCCCCcCcC----HHHHHHhcCCCC
Confidence            999998775431 11222    344565665543

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.92  E-value=0.00057  Score=69.18  Aligned_cols=164  Identities=13%  Similarity=0.075  Sum_probs=90.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHHh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKEL   76 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~l   76 (424)
                      .+.++|+.|+||||+|+.+++...-.....      -...++.....+.+........      .....++. ..+.+.+
T Consensus        40 a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~i-r~ii~~~  112 (585)
T PRK14950         40 AYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDA-REIIERV  112 (585)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHH-HHHHHHH
Confidence            357899999999999999998873111100      0011122223333332221111      01111211 1111211


Q ss_pred             -----ccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecc-hhhhc---ccCceEEecCCCHHHHHHHHHHHh
Q 037045           77 -----NDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRS-REFCW---QADGVIHVQQLCQREAKKLFWEVV  143 (424)
Q Consensus        77 -----~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~-~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~  143 (424)
                           .+.+-++|||+++...  ..+.+  .+-.....+.+|+++.. ..+..   .....+++..++.++..+.+.+.+
T Consensus       113 ~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a  192 (585)
T PRK14950        113 QFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIA  192 (585)
T ss_pred             hhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHH
Confidence                 2356699999998763  24444  11122234555555543 33332   556788999999999999888877


Q ss_pred             cccCCCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045          144 GVHLKKYPDIELVADSIVKECGGMPYMLKLIG  175 (424)
Q Consensus       144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a  175 (424)
                      ....  ....++.+..|++.++|.+..+....
T Consensus       193 ~~eg--l~i~~eal~~La~~s~Gdlr~al~~L  222 (585)
T PRK14950        193 AAEG--INLEPGALEAIARAATGSMRDAENLL  222 (585)
T ss_pred             HHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            5542  12335678889999999886554443

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=97.92  E-value=0.00014  Score=64.77  Aligned_cols=166  Identities=14%  Similarity=0.096  Sum_probs=97.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCC-ceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh--cc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRF-DIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL--ND   78 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l--~~   78 (424)
                      +....|||+|+|||+-|..++...--.+-| .+++-.+++......-.-.++          .+.+..........  ..
T Consensus        58 p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki----------k~fakl~~~~~~~~~~~~  127 (346)
T KOG0989|consen   58 PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI----------KNFAKLTVLLKRSDGYPC  127 (346)
T ss_pred             ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh----------cCHHHHhhccccccCCCC
Confidence            456789999999999999999887533444 334444443332211011111          00000000000000  01


Q ss_pred             Cc-EEEEEcCCCCcc--hhhhh-c-cCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045           79 RS-YVLFLDGVSSEI--NFKEI-G-MHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKK  149 (424)
Q Consensus        79 ~~-~LlvlD~~~~~~--~~~~~-~-~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~  149 (424)
                      +. -++|||+++.+.  .|..+ . +-.....++.++.+.+-....    +....+..+.|..++.++-++..+..+.  
T Consensus       128 ~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~--  205 (346)
T KOG0989|consen  128 PPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEG--  205 (346)
T ss_pred             CcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhC--
Confidence            33 489999999873  45555 1 124445555555444433333    7778889999999999999999987762  


Q ss_pred             CccHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 037045          150 YPDIELVADSIVKECGGMPYMLKLIGKELA  179 (424)
Q Consensus       150 ~~~~~~~~~~I~~~~~g~Plai~~~a~~l~  179 (424)
                      .....+..+.|++.++|.-.-.....+.+.
T Consensus       206 v~~d~~al~~I~~~S~GdLR~Ait~Lqsls  235 (346)
T KOG0989|consen  206 VDIDDDALKLIAKISDGDLRRAITTLQSLS  235 (346)
T ss_pred             CCCCHHHHHHHHHHcCCcHHHHHHHHHHhh
Confidence            333456788999999997654444444443

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=97.91  E-value=0.00029  Score=71.43  Aligned_cols=56  Identities=5%  Similarity=-0.061  Sum_probs=36.4

Q ss_pred             ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHH
Q 037045          120 QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKE  177 (424)
Q Consensus       120 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~  177 (424)
                      .....+.+.+++.+|..+++.+.+....  ....++....|.+.+..-+.++..++..
T Consensus       343 SR~~~i~~~pls~edi~~Il~~~a~~~~--v~ls~eal~~L~~ys~~gRraln~L~~~  398 (615)
T TIGR02903       343 SRCAEVFFEPLTPEDIALIVLNAAEKIN--VHLAAGVEELIARYTIEGRKAVNILADV  398 (615)
T ss_pred             hceeEEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            4556788999999999999998876432  1122445556666555446666655543

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=97.90  E-value=0.00063  Score=63.40  Aligned_cols=87  Identities=8%  Similarity=0.057  Sum_probs=55.6

Q ss_pred             CcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCC
Q 037045           79 RSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKY  150 (424)
Q Consensus        79 ~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~  150 (424)
                      ++-++|||+++.+..  .+.+ . +-....++.+|++|.+.....    +....+.+.+++.+++.+.+.......    
T Consensus       106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~----  181 (328)
T PRK05707        106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES----  181 (328)
T ss_pred             CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC----
Confidence            344567899998642  2222 1 111224566666666654433    778889999999999999887654211    


Q ss_pred             ccHHHHHHHHHHhcCCchHHH
Q 037045          151 PDIELVADSIVKECGGMPYML  171 (424)
Q Consensus       151 ~~~~~~~~~I~~~~~g~Plai  171 (424)
                        .++.+..++..++|.|...
T Consensus       182 --~~~~~~~~l~la~Gsp~~A  200 (328)
T PRK05707        182 --DERERIELLTLAGGSPLRA  200 (328)
T ss_pred             --ChHHHHHHHHHcCCCHHHH
Confidence              1334567889999999643

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=97.90  E-value=7e-05  Score=70.79  Aligned_cols=91  Identities=5%  Similarity=-0.019  Sum_probs=58.3

Q ss_pred             cCcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045           78 DRSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK  149 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~  149 (424)
                      +..-++|+|+++....  ...+ . +-....++.+|++|.... +.+   +....+.+.+++.++..+++.+.....   
T Consensus       140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~---  216 (365)
T PRK07471        140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL---  216 (365)
T ss_pred             CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---
Confidence            3567999999987642  2222 1 112223455666665543 332   778899999999999999998765321   


Q ss_pred             CccHHHHHHHHHHhcCCchHHHHHH
Q 037045          150 YPDIELVADSIVKECGGMPYMLKLI  174 (424)
Q Consensus       150 ~~~~~~~~~~I~~~~~g~Plai~~~  174 (424)
                        . ++....+++.++|.|.....+
T Consensus       217 --~-~~~~~~l~~~s~Gsp~~Al~l  238 (365)
T PRK07471        217 --P-DDPRAALAALAEGSVGRALRL  238 (365)
T ss_pred             --C-HHHHHHHHHHcCCCHHHHHHH
Confidence              1 122367899999999754333

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.90  E-value=0.00061  Score=67.02  Aligned_cols=96  Identities=8%  Similarity=0.015  Sum_probs=60.5

Q ss_pred             cCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045           78 DRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK  149 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~  149 (424)
                      +++-++|+|+++...  ..+.+  .+........+|+ |++...+..   .....+.+.+++.++..+.+.+.+....  
T Consensus       118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg--  195 (486)
T PRK14953        118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK--  195 (486)
T ss_pred             CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC--
Confidence            456799999998663  23333  1112222344444 444333332   5567899999999999999888775432  


Q ss_pred             CccHHHHHHHHHHhcCCchHHHHHHH
Q 037045          150 YPDIELVADSIVKECGGMPYMLKLIG  175 (424)
Q Consensus       150 ~~~~~~~~~~I~~~~~g~Plai~~~a  175 (424)
                      ....++.+..|++.++|.+..+....
T Consensus       196 i~id~~al~~La~~s~G~lr~al~~L  221 (486)
T PRK14953        196 IEYEEKALDLLAQASEGGMRDAASLL  221 (486)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            22335667889999999876554444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.89  E-value=2e-06  Score=83.45  Aligned_cols=105  Identities=19%  Similarity=0.284  Sum_probs=78.7

Q ss_pred             cceeEEEeeccCCCCCCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecc
Q 037045          263 AHTKRLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRS  341 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~  341 (424)
                      .+++.|++.+|.+..+.. ...+.+|+.|++++|.++.+..  +..++.|+.|++++|.+..+.. +..+.+|+.+++  
T Consensus        95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l--  169 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLKLLDL--  169 (414)
T ss_pred             cceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccC-CccchhhhcccC--
Confidence            788888888888888777 7888888888888888887766  4566778888888888766643 445778888888  


Q ss_pred             cccccccCChh-hhccCCCCEEEecCCcCccc
Q 037045          342 SCSLLLQLPAE-IGRLQKLEILDVSHTKVQCL  372 (424)
Q Consensus       342 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~l  372 (424)
                      +.+.+..+... ...+.+|..+.+.+|.+..+
T Consensus       170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  170 SYNRIVDIENDELSELISLEELDLGGNSIREI  201 (414)
T ss_pred             CcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence            77777766553 46667777777777766544

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.88  E-value=0.00062  Score=66.74  Aligned_cols=146  Identities=10%  Similarity=0.114  Sum_probs=78.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -|.++|++|+|||.+|+.+++...  ..|   +-++.+.          +...    ....+.......+...-...+++
T Consensus       261 GILL~GPpGTGKTllAkaiA~e~~--~~~---~~l~~~~----------l~~~----~vGese~~l~~~f~~A~~~~P~I  321 (489)
T CHL00195        261 GLLLVGIQGTGKSLTAKAIANDWQ--LPL---LRLDVGK----------LFGG----IVGESESRMRQMIRIAEALSPCI  321 (489)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEEhHH----------hccc----ccChHHHHHHHHHHHHHhcCCcE
Confidence            478999999999999999999873  332   2222211          0000    00011111111122111246899


Q ss_pred             EEEcCCCCcch--------------hhhh-c-cCCCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHHHHH
Q 037045           83 LFLDGVSSEIN--------------FKEI-G-MHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAKKLF  139 (424)
Q Consensus        83 lvlD~~~~~~~--------------~~~~-~-~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~~l~  139 (424)
                      |+||+++....              +..+ . +.....+--||.||.......       .-+..+.++.-+.++-.++|
T Consensus       322 L~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il  401 (489)
T CHL00195        322 LWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIF  401 (489)
T ss_pred             EEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHH
Confidence            99999975310              1111 0 011222233455665443222       44567888888999999999


Q ss_pred             HHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          140 WEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      +.+..+.... ...+.....+++.+.|+-
T Consensus       402 ~~~l~~~~~~-~~~~~dl~~La~~T~GfS  429 (489)
T CHL00195        402 KIHLQKFRPK-SWKKYDIKKLSKLSNKFS  429 (489)
T ss_pred             HHHHhhcCCC-cccccCHHHHHhhcCCCC
Confidence            8887653111 111223556777777764

>PRK08116 hypothetical protein; Validated

Probab=97.88  E-value=4.2e-05  Score=69.25  Aligned_cols=99  Identities=15%  Similarity=0.253  Sum_probs=56.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -+.|+|..|+|||.||..+++....  ....+++++      ..+++..+...+....     ......+.+.+.+-. |
T Consensus       116 gl~l~G~~GtGKThLa~aia~~l~~--~~~~v~~~~------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~~d-l  181 (268)
T PRK08116        116 GLLLWGSVGTGKTYLAACIANELIE--KGVPVIFVN------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVNAD-L  181 (268)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEE------HHHHHHHHHHHHhccc-----cccHHHHHHHhcCCC-E
Confidence            3789999999999999999999842  333456655      3445555544433211     111222333344444 8


Q ss_pred             EEEcCCCC--cchhhhh-ccC----CCCCCcEEEEEecch
Q 037045           83 LFLDGVSS--EINFKEI-GMH----DDHGRGKVVFACRSR  115 (424)
Q Consensus        83 lvlD~~~~--~~~~~~~-~~~----~~~~~~~iiittr~~  115 (424)
                      |||||+..  ..+|..- .+.    ....+..+|+||...
T Consensus       182 LviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~  221 (268)
T PRK08116        182 LILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS  221 (268)
T ss_pred             EEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            99999953  3333221 111    233456788888643

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.88  E-value=0.00017  Score=67.49  Aligned_cols=147  Identities=12%  Similarity=0.080  Sum_probs=78.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      .++.++|++|+|||++|+.+++..  ...   ...++... .....+...+.. +...              ..+.+..-
T Consensus        44 ~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~~~~i~~~l~~-~~~~--------------~~~~~~~~  102 (316)
T PHA02544         44 NMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CRIDFVRNRLTR-FAST--------------VSLTGGGK  102 (316)
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-ccHHHHHHHHHH-HHHh--------------hcccCCCe
Confidence            356679999999999999999876  222   23444443 122221111111 0000              00113456


Q ss_pred             EEEEcCCCCcc--h-hhhh-c-cCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhccc-----C
Q 037045           82 VLFLDGVSSEI--N-FKEI-G-MHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVH-----L  147 (424)
Q Consensus        82 LlvlD~~~~~~--~-~~~~-~-~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~-----~  147 (424)
                      ++|+|+++...  . .+.+ . +.....++.+|+||.......    .....+.+...+.++..+++.......     .
T Consensus       103 vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~  182 (316)
T PHA02544        103 VIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEA  182 (316)
T ss_pred             EEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            89999998661  1 1222 1 113345678888886543222    555678887888888776654322110     1


Q ss_pred             CCCccHHHHHHHHHHhcCCchH
Q 037045          148 KKYPDIELVADSIVKECGGMPY  169 (424)
Q Consensus       148 ~~~~~~~~~~~~I~~~~~g~Pl  169 (424)
                      ...+..++....+++...|.-.
T Consensus       183 ~~~~i~~~al~~l~~~~~~d~r  204 (316)
T PHA02544        183 EGVEVDMKVLAALVKKNFPDFR  204 (316)
T ss_pred             cCCCCCHHHHHHHHHhcCCCHH
Confidence            1122223455667776666443

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=97.88  E-value=0.00086  Score=65.46  Aligned_cols=92  Identities=10%  Similarity=0.053  Sum_probs=59.0

Q ss_pred             cCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEec-chhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045           78 DRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACR-SREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK  149 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr-~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~  149 (424)
                      +.+-++|+|+++...  ..+.+  .+-.....+.+|++|. ...+..   .....+++..+++++..+.+.+.+...  .
T Consensus       120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~e--g  197 (451)
T PRK06305        120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQE--G  197 (451)
T ss_pred             CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHc--C
Confidence            456789999998653  23333  1112223555665553 333332   667789999999999999888876543  1


Q ss_pred             CccHHHHHHHHHHhcCCchHHH
Q 037045          150 YPDIELVADSIVKECGGMPYML  171 (424)
Q Consensus       150 ~~~~~~~~~~I~~~~~g~Plai  171 (424)
                      ....++.+..|++.++|.+..+
T Consensus       198 ~~i~~~al~~L~~~s~gdlr~a  219 (451)
T PRK06305        198 IETSREALLPIARAAQGSLRDA  219 (451)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHH
Confidence            2233567888999999977433

>CHL00176 ftsH cell division protein; Validated

Probab=97.87  E-value=0.00041  Score=70.27  Aligned_cols=148  Identities=14%  Similarity=0.173  Sum_probs=83.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -+.++|++|+|||++|+.++....  ..     |+.++.    .++....   .+     .........+.+.....+++
T Consensus       218 gVLL~GPpGTGKT~LAralA~e~~--~p-----~i~is~----s~f~~~~---~g-----~~~~~vr~lF~~A~~~~P~I  278 (638)
T CHL00176        218 GVLLVGPPGTGKTLLAKAIAGEAE--VP-----FFSISG----SEFVEMF---VG-----VGAARVRDLFKKAKENSPCI  278 (638)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC--CC-----eeeccH----HHHHHHh---hh-----hhHHHHHHHHHHHhcCCCcE
Confidence            478999999999999999998762  22     222221    1111110   00     01111222333444567899


Q ss_pred             EEEcCCCCcc----------------hhhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHH
Q 037045           83 LFLDGVSSEI----------------NFKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREA  135 (424)
Q Consensus        83 lvlD~~~~~~----------------~~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~  135 (424)
                      |+||+++...                .+..+  .+.  ....+..+|.||.......       ..+..+.++..+.++-
T Consensus       279 LfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R  358 (638)
T CHL00176        279 VFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGR  358 (638)
T ss_pred             EEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHH
Confidence            9999997541                11222  000  1223345555555433222       3457888999999999


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCC-chHHHH
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGG-MPYMLK  172 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g-~Plai~  172 (424)
                      .++++.++...   ....+.....+++.+.| .+..|.
T Consensus       359 ~~IL~~~l~~~---~~~~d~~l~~lA~~t~G~sgaDL~  393 (638)
T CHL00176        359 LDILKVHARNK---KLSPDVSLELIARRTPGFSGADLA  393 (638)
T ss_pred             HHHHHHHHhhc---ccchhHHHHHHHhcCCCCCHHHHH
Confidence            99998887653   11223456778888887 333343

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.86  E-value=0.00017  Score=75.85  Aligned_cols=152  Identities=14%  Similarity=0.115  Sum_probs=83.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCC----Cce-EEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh--
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRR----FDI-IFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL--   76 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l--   76 (424)
                      +.++|++|+||||+|+.++++.....-    .+. ++.++++.-........+             .+...+.+.+..  
T Consensus       211 ~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge-------------~e~~lk~ii~e~~~  277 (852)
T TIGR03345       211 PILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGE-------------FENRLKSVIDEVKA  277 (852)
T ss_pred             eeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchH-------------HHHHHHHHHHHHHh
Confidence            569999999999999999998742111    122 333443321000000000             001111111111  


Q ss_pred             ccCcEEEEEcCCCCcc---------hhhhhccCCCCCC-cEEEEEecchhhhc---------ccCceEEecCCCHHHHHH
Q 037045           77 NDRSYVLFLDGVSSEI---------NFKEIGMHDDHGR-GKVVFACRSREFCW---------QADGVIHVQQLCQREAKK  137 (424)
Q Consensus        77 ~~~~~LlvlD~~~~~~---------~~~~~~~~~~~~~-~~iiittr~~~~~~---------~~~~~~~l~~l~~~~~~~  137 (424)
                      .+.+++|+||+++...         +...+..|.-..| -++|-+|....+.+         .....+.+++++.+++.+
T Consensus       278 ~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~  357 (852)
T TIGR03345       278 SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIR  357 (852)
T ss_pred             cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHH
Confidence            1468999999987642         2222323323333 35666666533211         566789999999999999


Q ss_pred             HHHHHhccc--CCCCccHHHHHHHHHHhcCCch
Q 037045          138 LFWEVVGVH--LKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       138 l~~~~~~~~--~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      +++.....-  ...-...++....+++.+.++.
T Consensus       358 iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi  390 (852)
T TIGR03345       358 MLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI  390 (852)
T ss_pred             HHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence            975444221  1122333556677888887655

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=97.84  E-value=0.0013  Score=58.16  Aligned_cols=146  Identities=15%  Similarity=0.195  Sum_probs=86.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL   83 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll   83 (424)
                      +.++|++|.||||||.-+++...+.  +    -+.-+....-..-+-.++..+                     ...=++
T Consensus        55 vLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~leK~gDlaaiLt~L---------------------e~~DVL  107 (332)
T COG2255          55 VLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPALEKPGDLAAILTNL---------------------EEGDVL  107 (332)
T ss_pred             EEeeCCCCCcHHHHHHHHHHHhcCC--e----EecccccccChhhHHHHHhcC---------------------CcCCeE
Confidence            6789999999999999999998431  1    111111111111111122211                     223355


Q ss_pred             EEcCCCCcc---------hhhhh--ccC-CCCCCcE-----------EEEEecchhhhc----ccCceEEecCCCHHHHH
Q 037045           84 FLDGVSSEI---------NFKEI--GMH-DDHGRGK-----------VVFACRSREFCW----QADGVIHVQQLCQREAK  136 (424)
Q Consensus        84 vlD~~~~~~---------~~~~~--~~~-~~~~~~~-----------iiittr~~~~~~----~~~~~~~l~~l~~~~~~  136 (424)
                      .+|.++...         .++.+  .+. -.+++++           |=-|||.-....    ....+.+++-.+.+|-.
T Consensus       108 FIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~  187 (332)
T COG2255         108 FIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELE  187 (332)
T ss_pred             EEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHH
Confidence            667776542         12222  000 1122222           335888766665    55667789999999999


Q ss_pred             HHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045          137 KLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKEL  178 (424)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l  178 (424)
                      +.+.+.+..-  .....++.+.+|++...|-|.-..-+...+
T Consensus       188 ~Iv~r~a~~l--~i~i~~~~a~eIA~rSRGTPRIAnRLLrRV  227 (332)
T COG2255         188 EIVKRSAKIL--GIEIDEEAALEIARRSRGTPRIANRLLRRV  227 (332)
T ss_pred             HHHHHHHHHh--CCCCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence            9999888544  233346678999999999996544444333

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=0.00035  Score=67.84  Aligned_cols=142  Identities=14%  Similarity=0.218  Sum_probs=81.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL   83 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll   83 (424)
                      |.+||++|+|||.||+.++....  -.     ++.++.+        +|...+.    ..+++...+.+.+..+..+|++
T Consensus       226 vLlHGPPGCGKT~lA~AiAgel~--vP-----f~~isAp--------eivSGvS----GESEkkiRelF~~A~~~aPciv  286 (802)
T KOG0733|consen  226 VLLHGPPGCGKTSLANAIAGELG--VP-----FLSISAP--------EIVSGVS----GESEKKIRELFDQAKSNAPCIV  286 (802)
T ss_pred             eeeeCCCCccHHHHHHHHhhhcC--Cc-----eEeecch--------hhhcccC----cccHHHHHHHHHHHhccCCeEE
Confidence            67999999999999999999883  22     3333333        2222222    2333333444444445679999


Q ss_pred             EEcCCCCcc-------------h-------hhhhccCCCCCCcEEEE--Eecchhhhc------ccCceEEecCCCHHHH
Q 037045           84 FLDGVSSEI-------------N-------FKEIGMHDDHGRGKVVF--ACRSREFCW------QADGVIHVQQLCQREA  135 (424)
Q Consensus        84 vlD~~~~~~-------------~-------~~~~~~~~~~~~~~iii--ttr~~~~~~------~~~~~~~l~~l~~~~~  135 (424)
                      +||+++-.-             .       ++.+..........+||  |+|...+.+      ..+..|.+.--++..-
T Consensus       287 FiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR  366 (802)
T KOG0733|consen  287 FIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAR  366 (802)
T ss_pred             EeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHH
Confidence            999987530             1       22222222222223343  555544443      5667777777777777


Q ss_pred             HHHHHHHhccc-CCCCccHHHHHHHHHHhcCCch
Q 037045          136 KKLFWEVVGVH-LKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       136 ~~l~~~~~~~~-~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      .+++.....+. ....-    ..++|++..-|+-
T Consensus       367 ~~IL~~~~~~lrl~g~~----d~~qlA~lTPGfV  396 (802)
T KOG0733|consen  367 EEILRIICRGLRLSGDF----DFKQLAKLTPGFV  396 (802)
T ss_pred             HHHHHHHHhhCCCCCCc----CHHHHHhcCCCcc
Confidence            77777666543 22222    2455777776653

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=97.82  E-value=0.0004  Score=69.02  Aligned_cols=149  Identities=14%  Similarity=0.199  Sum_probs=80.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL   83 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll   83 (424)
                      +.++|++|+|||++|+.++....  ..|     +.++    ..++....   .+     .........+.......+++|
T Consensus        91 iLL~GppGtGKT~la~alA~~~~--~~~-----~~i~----~~~~~~~~---~g-----~~~~~l~~~f~~a~~~~p~Il  151 (495)
T TIGR01241        91 VLLVGPPGTGKTLLAKAVAGEAG--VPF-----FSIS----GSDFVEMF---VG-----VGASRVRDLFEQAKKNAPCII  151 (495)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC--CCe-----eecc----HHHHHHHH---hc-----ccHHHHHHHHHHHHhcCCCEE
Confidence            67999999999999999998762  222     2221    11111111   00     111122223333334567999


Q ss_pred             EEcCCCCcch----------------hhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHH
Q 037045           84 FLDGVSSEIN----------------FKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAK  136 (424)
Q Consensus        84 vlD~~~~~~~----------------~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~  136 (424)
                      +||+++....                +..+  .+-  ....+..||.||.......       .-+..+++...+.++-.
T Consensus       152 ~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~  231 (495)
T TIGR01241       152 FIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGRE  231 (495)
T ss_pred             EEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHH
Confidence            9999865310                1111  000  1122334555554433222       34567889988999999


Q ss_pred             HHHHHHhcccCCCCccHHHHHHHHHHhcCCch-HHHHHH
Q 037045          137 KLFWEVVGVHLKKYPDIELVADSIVKECGGMP-YMLKLI  174 (424)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P-lai~~~  174 (424)
                      ++++.........   .+.....+++.+.|+- ..|..+
T Consensus       232 ~il~~~l~~~~~~---~~~~l~~la~~t~G~sgadl~~l  267 (495)
T TIGR01241       232 EILKVHAKNKKLA---PDVDLKAVARRTPGFSGADLANL  267 (495)
T ss_pred             HHHHHHHhcCCCC---cchhHHHHHHhCCCCCHHHHHHH
Confidence            9998877543211   1223457888888743 444443

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.82  E-value=0.00073  Score=68.40  Aligned_cols=151  Identities=13%  Similarity=0.177  Sum_probs=88.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhcc---------------------CCCCceEEEEEeccCCCHHHHHHHHHHHhccccc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGE---------------------SRRFDIIFWENINTDGNIRDIQEIILERLKVNAK   61 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~---------------------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~   61 (424)
                      .+.++|+.|+||||+|+.++....-                     ..+|+ +..++.....+.+++. .+..++.... 
T Consensus        41 ayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~ld~~~~~~vd~Ir-~li~~~~~~P-  117 (614)
T PRK14971         41 AYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHELDAASNNSVDDIR-NLIEQVRIPP-  117 (614)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEEecccccCCHHHHH-HHHHHHhhCc-
Confidence            4678999999999999998887531                     11233 2233332222222222 1212111000 


Q ss_pred             ccChhHHHHHHHHHhccCcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHH
Q 037045           62 ELNNDLRADIISKELNDRSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQR  133 (424)
Q Consensus        62 ~~~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~  133 (424)
                                    +.+.+-++|||+++....  .+.+ . +-....++.+|+ |++...+..   .....+++.+++.+
T Consensus       118 --------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~  183 (614)
T PRK14971        118 --------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVA  183 (614)
T ss_pred             --------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHH
Confidence                          123455889999988743  3333 1 112223455554 444444443   77889999999999


Q ss_pred             HHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045          134 EAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~  172 (424)
                      +..+.+.+.+....  ....++.+..|++.++|....+.
T Consensus       184 ei~~~L~~ia~~eg--i~i~~~al~~La~~s~gdlr~al  220 (614)
T PRK14971        184 DIVNHLQYVASKEG--ITAEPEALNVIAQKADGGMRDAL  220 (614)
T ss_pred             HHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence            99999988776542  22334567889999999775443

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=97.82  E-value=0.0012  Score=66.20  Aligned_cols=94  Identities=13%  Similarity=0.039  Sum_probs=60.8

Q ss_pred             cCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEe-cchhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045           78 DRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFAC-RSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK  149 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiitt-r~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~  149 (424)
                      +++-++|+|+++....  ++.+  .+-.....+.+|++| ....+..   .....+++..++.++..+.+.+.+...  .
T Consensus       118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~e--g  195 (563)
T PRK06647        118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLED--Q  195 (563)
T ss_pred             CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHc--C
Confidence            4566899999987743  3444  111222345555544 4333333   667789999999999999988877543  2


Q ss_pred             CccHHHHHHHHHHhcCCchHHHHH
Q 037045          150 YPDIELVADSIVKECGGMPYMLKL  173 (424)
Q Consensus       150 ~~~~~~~~~~I~~~~~g~Plai~~  173 (424)
                      ....++.+..|++.++|.+..+..
T Consensus       196 i~id~eAl~lLa~~s~GdlR~als  219 (563)
T PRK06647        196 IKYEDEALKWIAYKSTGSVRDAYT  219 (563)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHH
Confidence            233356778899999998854433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.80  E-value=3.8e-05  Score=48.25  Aligned_cols=35  Identities=34%  Similarity=0.474  Sum_probs=21.8

Q ss_pred             CCCEEEecCCcCcccchhhhcCCCCCEeeeccccC
Q 037045          358 KLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVEN  392 (424)
Q Consensus       358 ~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~  392 (424)
                      +|+.|++++|+++.+|..+.++++|+.|++++|.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            56666666666666665566666777777766643

...

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.79  E-value=0.00045  Score=66.31  Aligned_cols=114  Identities=21%  Similarity=0.221  Sum_probs=75.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-CHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-NIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      ++.|.|+-++||||+++.+.....  +.   ++++..-... +...+ .+....                +.+....++.
T Consensus        39 i~~i~GpR~~GKTtll~~l~~~~~--~~---~iy~~~~d~~~~~~~l-~d~~~~----------------~~~~~~~~~~   96 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLIKGLL--EE---IIYINFDDLRLDRIEL-LDLLRA----------------YIELKEREKS   96 (398)
T ss_pred             EEEEECCccccHHHHHHHHHhhCC--cc---eEEEEecchhcchhhH-HHHHHH----------------HHHhhccCCc
Confidence            789999999999999977777663  22   5555543321 21111 111111                1111112778


Q ss_pred             EEEEcCCCCcchhhhh--ccCCCCCCcEEEEEecchhhhc--------ccCceEEecCCCHHHHHHHH
Q 037045           82 VLFLDGVSSEINFKEI--GMHDDHGRGKVVFACRSREFCW--------QADGVIHVQQLCQREAKKLF  139 (424)
Q Consensus        82 LlvlD~~~~~~~~~~~--~~~~~~~~~~iiittr~~~~~~--------~~~~~~~l~~l~~~~~~~l~  139 (424)
                      .++||.|+...+|+..  .+.+.... ++++|+.+.....        +....+++-||+..|-..+.
T Consensus        97 yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~  163 (398)
T COG1373          97 YIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK  163 (398)
T ss_pred             eEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence            9999999999999888  33344444 8888887765555        67888899999998877653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.77  E-value=3.4e-05  Score=48.49  Aligned_cols=39  Identities=33%  Similarity=0.509  Sum_probs=26.2

Q ss_pred             ccceeeecccccccccCChhhhccCCCCEEEecCCcCcccc
Q 037045          333 NLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLP  373 (424)
Q Consensus       333 ~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp  373 (424)
                      +|++|++  +.+.+.++|..+++|++|+.|++++|+++++|
T Consensus         2 ~L~~L~l--~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDL--SNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEE--TSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEc--cCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            5667777  66677777766777777777777777777664

...

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.76  E-value=0.0015  Score=66.25  Aligned_cols=165  Identities=12%  Similarity=0.034  Sum_probs=90.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHHh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKEL   76 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~l   76 (424)
                      -+.++|+.|+||||+|+.+++... +...+....    ..+..-..++.+........      .....++....+ +..
T Consensus        40 a~Lf~Gp~G~GKttlA~~lAk~L~-c~~~~~~~~----~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii-~~a  113 (620)
T PRK14948         40 AYLFTGPRGTGKTSSARILAKSLN-CLNSDKPTP----EPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELI-ERA  113 (620)
T ss_pred             eEEEECCCCCChHHHHHHHHHHhc-CCCcCCCCC----CCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHH-HHH
Confidence            357899999999999999999874 211111000    11122233333332222111      111111221111 111


Q ss_pred             -----ccCcEEEEEcCCCCcch--hhhh-cc-CCCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHHHHHHHHHHHh
Q 037045           77 -----NDRSYVLFLDGVSSEIN--FKEI-GM-HDDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQREAKKLFWEVV  143 (424)
Q Consensus        77 -----~~~~~LlvlD~~~~~~~--~~~~-~~-~~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~  143 (424)
                           .+++-++|||+++....  .+.+ .. -.....+.+|+ |+....+..   .....+++..++.++..+.+.+.+
T Consensus       114 ~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia  193 (620)
T PRK14948        114 QFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIA  193 (620)
T ss_pred             hhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHH
Confidence                 23456899999997642  3333 11 11122344444 443333332   667888999999999888888777


Q ss_pred             cccCCCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045          144 GVHLKKYPDIELVADSIVKECGGMPYMLKLIG  175 (424)
Q Consensus       144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a  175 (424)
                      ....  .....+.+..|++.++|.+..+....
T Consensus       194 ~keg--i~is~~al~~La~~s~G~lr~A~~lL  223 (620)
T PRK14948        194 EKES--IEIEPEALTLVAQRSQGGLRDAESLL  223 (620)
T ss_pred             HHhC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            5531  12224567889999999886554433

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.76  E-value=0.00013  Score=62.75  Aligned_cols=86  Identities=22%  Similarity=0.244  Sum_probs=56.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-CHHHHHHHHHHHhcccc-c---ccChhHHHHHHHHHh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-NIRDIQEIILERLKVNA-K---ELNNDLRADIISKEL   76 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-~---~~~~~~~~~~l~~~l   76 (424)
                      +||+++|+.|+||||.+.+++.....  +-..+..++..... ...+-++..++.++.+. .   ..+..+......+.+
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~--~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~   79 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKL--KGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF   79 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhh--ccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence            68999999999999999999999853  34457778776543 45567778888888775 1   222333333223333


Q ss_pred             ccCcE-EEEEcCCC
Q 037045           77 NDRSY-VLFLDGVS   89 (424)
Q Consensus        77 ~~~~~-LlvlD~~~   89 (424)
                      +.+++ ++++|-..
T Consensus        80 ~~~~~D~vlIDT~G   93 (196)
T PF00448_consen   80 RKKGYDLVLIDTAG   93 (196)
T ss_dssp             HHTTSSEEEEEE-S
T ss_pred             hhcCCCEEEEecCC
Confidence            34443 88888764

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.72  E-value=3.9e-06  Score=81.46  Aligned_cols=103  Identities=22%  Similarity=0.288  Sum_probs=76.8

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeeecc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFLRS  341 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l~~  341 (424)
                      .+|+.|++++|.++.+..+..++.|+.|++++|.++.+..  +..+.+|+.+++++|.+..++.. ...+..++.+.+  
T Consensus       118 ~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l--  193 (414)
T KOG0531|consen  118 VNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRIVDIENDELSELISLEELDL--  193 (414)
T ss_pred             hcchheeccccccccccchhhccchhhheeccCcchhccC--CccchhhhcccCCcchhhhhhhhhhhhccchHHHhc--
Confidence            8999999999999999988888889999999999998777  55688999999999988666543 577888888888  


Q ss_pred             cccccccCChhhhccCCCCEEEecCCcCc
Q 037045          342 SCSLLLQLPAEIGRLQKLEILDVSHTKVQ  370 (424)
Q Consensus       342 ~~~~~~~lp~~~~~l~~L~~L~l~~~~i~  370 (424)
                      ..+.+..+.. +..+.++..+++..|.++
T Consensus       194 ~~n~i~~i~~-~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  194 GGNSIREIEG-LDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             cCCchhcccc-hHHHHHHHHhhcccccce
Confidence            6777665431 222223333344444444

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=97.72  E-value=8.1e-05  Score=71.04  Aligned_cols=88  Identities=17%  Similarity=0.258  Sum_probs=56.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc--cC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN--DR   79 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~--~~   79 (424)
                      +-|.++|++|+|||++|+.+++.......++.+.||.+....+..+++.-..-. +...... .+...+.+.+...  ++
T Consensus       195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vgy~~~-~G~f~~~~~~A~~~p~~  272 (459)
T PRK11331        195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVGFRRK-DGIFYNFCQQAKEQPEK  272 (459)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCCeEec-CchHHHHHHHHHhcccC
Confidence            357889999999999999999988655677889999999887777665422100 0000000 0111122222222  36


Q ss_pred             cEEEEEcCCCCc
Q 037045           80 SYVLFLDGVSSE   91 (424)
Q Consensus        80 ~~LlvlD~~~~~   91 (424)
                      ++++|||++...
T Consensus       273 ~~vliIDEINRa  284 (459)
T PRK11331        273 KYVFIIDEINRA  284 (459)
T ss_pred             CcEEEEehhhcc
Confidence            899999999875

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.72  E-value=0.0019  Score=61.07  Aligned_cols=144  Identities=12%  Similarity=0.126  Sum_probs=92.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc-cccChhHHHHHHHHHhccC--
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA-KELNNDLRADIISKELNDR--   79 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~~--   79 (424)
                      -+-|.|-+|+|||.+...++.+......--.++++++..-....+++..|...+-... ......+....+.+...+.  
T Consensus       177 SlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~  256 (529)
T KOG2227|consen  177 SLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKF  256 (529)
T ss_pred             ceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccc
Confidence            3568899999999999999999842222234688888887788889999888873332 2222244455555555553  


Q ss_pred             cEEEEEcCCCCcc-----hhhhhccCCCCCCcEEEEEe---------cchhhhc----ccCceEEecCCCHHHHHHHHHH
Q 037045           80 SYVLFLDGVSSEI-----NFKEIGMHDDHGRGKVVFAC---------RSREFCW----QADGVIHVQQLCQREAKKLFWE  141 (424)
Q Consensus        80 ~~LlvlD~~~~~~-----~~~~~~~~~~~~~~~iiitt---------r~~~~~~----~~~~~~~l~~l~~~~~~~l~~~  141 (424)
                      -+|+|+|+.+...     .+-.+...+.-+++++|+.-         |.-....    -....+...+.+.++-++++..
T Consensus       257 ~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~  336 (529)
T KOG2227|consen  257 MLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQ  336 (529)
T ss_pred             eEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHH
Confidence            5899999987542     11111111334455554322         2111111    3456778889999999999999


Q ss_pred             Hhccc
Q 037045          142 VVGVH  146 (424)
Q Consensus       142 ~~~~~  146 (424)
                      ++...
T Consensus       337 rl~~~  341 (529)
T KOG2227|consen  337 RLSEE  341 (529)
T ss_pred             HHhcc
Confidence            88655

>PRK12608 transcription termination factor Rho; Provisional

Probab=97.72  E-value=0.00029  Score=65.77  Aligned_cols=88  Identities=15%  Similarity=0.237  Sum_probs=58.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCce-EEEEEecc-CCCHHHHHHHHHHHhcccccccChhH------HHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDI-IFWENINT-DGNIRDIQEIILERLKVNAKELNNDL------RADIISK   74 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~l~~   74 (424)
                      -+.|+|++|+|||||++++++... .++.+. ++|+.++. ..++.++.+.+...+..+........      ....+.+
T Consensus       135 R~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae  213 (380)
T PRK12608        135 RGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAK  213 (380)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHH
Confidence            358999999999999999999874 233444 46766665 56888999999887765431111111      1112222


Q ss_pred             Hh--ccCcEEEEEcCCCCc
Q 037045           75 EL--NDRSYVLFLDGVSSE   91 (424)
Q Consensus        75 ~l--~~~~~LlvlD~~~~~   91 (424)
                      .+  ++++++||+|++...
T Consensus       214 ~f~~~GkdVVLvlDsltr~  232 (380)
T PRK12608        214 RLVEQGKDVVILLDSLTRL  232 (380)
T ss_pred             HHHHcCCCEEEEEeCcHHH
Confidence            22  468999999998653

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.00058  Score=67.54  Aligned_cols=147  Identities=15%  Similarity=0.119  Sum_probs=88.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC--CCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD--GNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRS   80 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~   80 (424)
                      -|.|.|+.|+|||+||+.+++... +...-++.+++++.-  ...+.+++.+.+                .+.+.+...+
T Consensus       433 ~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~----------------vfse~~~~~P  495 (952)
T KOG0735|consen  433 NILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN----------------VFSEALWYAP  495 (952)
T ss_pred             cEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH----------------HHHHHHhhCC
Confidence            378999999999999999999996 555666777777663  234444433322                2334556678


Q ss_pred             EEEEEcCCCCcc--------h----hhhh-ccC------CCCCCc--EEEEEecchhhhc-------ccCceEEecCCCH
Q 037045           81 YVLFLDGVSSEI--------N----FKEI-GMH------DDHGRG--KVVFACRSREFCW-------QADGVIHVQQLCQ  132 (424)
Q Consensus        81 ~LlvlD~~~~~~--------~----~~~~-~~~------~~~~~~--~iiittr~~~~~~-------~~~~~~~l~~l~~  132 (424)
                      -++|+||++...        +    .+.+ .+.      ....+.  .+|.|.+......       ..+....+..+..
T Consensus       496 SiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~  575 (952)
T KOG0735|consen  496 SIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAV  575 (952)
T ss_pred             cEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcch
Confidence            899999987531        1    1111 000      122233  3444544433333       3455667778888


Q ss_pred             HHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          133 REAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      ++-.+++........  .....+...-+..+|+|+-
T Consensus       576 ~~R~~IL~~~~s~~~--~~~~~~dLd~ls~~TEGy~  609 (952)
T KOG0735|consen  576 TRRKEILTTIFSKNL--SDITMDDLDFLSVKTEGYL  609 (952)
T ss_pred             hHHHHHHHHHHHhhh--hhhhhHHHHHHHHhcCCcc
Confidence            888787776665431  1222333444888888863

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.71  E-value=5.4e-06  Score=81.49  Aligned_cols=104  Identities=24%  Similarity=0.249  Sum_probs=80.3

Q ss_pred             hcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCCh-hhhccCCCCEEEecCCcCcccchhhhcCCCCC
Q 037045          305 FDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSEIGQLIELK  383 (424)
Q Consensus       305 ~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~  383 (424)
                      +.-++.++.|++++|++.+.. .+-.+++|..||+  +.|.+..+|. ....| +|+.|.+++|.++++ .++.++++|+
T Consensus       183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDl--syN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~  257 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDL--SYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLY  257 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhhH-HHHhccccccccc--ccchhccccccchhhh-hheeeeecccHHHhh-hhHHhhhhhh
Confidence            555678888899998886553 6777888888998  8888888876 33343 488888988888888 4688999999


Q ss_pred             EeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045          384 YLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       384 ~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                      .|+++.|-+.+           -..+..|..|..|+.|+|.
T Consensus       258 ~LDlsyNll~~-----------hseL~pLwsLs~L~~L~Le  287 (1096)
T KOG1859|consen  258 GLDLSYNLLSE-----------HSELEPLWSLSSLIVLWLE  287 (1096)
T ss_pred             ccchhHhhhhc-----------chhhhHHHHHHHHHHHhhc
Confidence            99999986553           3677778888888888763

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.70  E-value=6.1e-05  Score=62.99  Aligned_cols=102  Identities=19%  Similarity=0.241  Sum_probs=60.9

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC--hhhhcccccceeeec
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP--PSISRLINLNALFLR  340 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p--~~~~~l~~L~~l~l~  340 (424)
                      .+...+++.+|.+..++.+..++.|..|.+.+|.++.+.+..-..+++|..|.+.+|++..+-  ..+-.++.|++|.+ 
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl-  120 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL-  120 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee-
Confidence            345566777777777777777777777777777777766664444566777777777653221  22445556666666 


Q ss_pred             ccccccccCCh----hhhccCCCCEEEecC
Q 037045          341 SSCSLLLQLPA----EIGRLQKLEILDVSH  366 (424)
Q Consensus       341 ~~~~~~~~lp~----~~~~l~~L~~L~l~~  366 (424)
                       -.+.......    =+..+|+|++||...
T Consensus       121 -l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 -LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             -cCCchhcccCceeEEEEecCcceEeehhh
Confidence             4555443321    134556666666543

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.70  E-value=0.00033  Score=62.07  Aligned_cols=88  Identities=15%  Similarity=0.228  Sum_probs=54.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCC----CCceEEEEEeccCCCHHHHHHHHHHHhccc-------c---cccChhH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESR----RFDIIFWENINTDGNIRDIQEIILERLKVN-------A---KELNNDL   67 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~---~~~~~~~   67 (424)
                      .++.|+|++|+|||+++.+++.......    .-..++|++.....+...+.+ +.+..+..       -   ...+.++
T Consensus        20 ~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~~~   98 (226)
T cd01393          20 RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARPYNGEQ   98 (226)
T ss_pred             cEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeCCCHHH
Confidence            4789999999999999999988763111    115689999877666555443 33332211       0   2234455


Q ss_pred             HHHHHHHHhc---c-CcEEEEEcCCCC
Q 037045           68 RADIISKELN---D-RSYVLFLDGVSS   90 (424)
Q Consensus        68 ~~~~l~~~l~---~-~~~LlvlD~~~~   90 (424)
                      ....+.+...   . +.-++|+|.+..
T Consensus        99 ~~~~l~~~~~~~~~~~~~lvVIDsis~  125 (226)
T cd01393          99 QLEIVEELERIMSSGRVDLVVVDSVAA  125 (226)
T ss_pred             HHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence            5555554433   3 345899998754

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]

Probab=97.69  E-value=0.0029  Score=59.83  Aligned_cols=177  Identities=12%  Similarity=0.150  Sum_probs=112.1

Q ss_pred             EEEEEcCCCCcHHHHH-HHHHHhhccCCCCceEEEEEecc---CCCHHHHHHHHHHHhcccc------------------
Q 037045            3 KICIWGPLGVGKTTIM-ENLHHSIGESRRFDIIFWENINT---DGNIRDIQEIILERLKVNA------------------   60 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~~~------------------   60 (424)
                      +|.|+||-|+||+.|+ .++..+.+  .    +..++|.+   ..+-..+++.++.++|.-+                  
T Consensus        19 FIvV~GPrGSGK~elV~d~~L~~r~--~----vL~IDC~~i~~ar~D~~~I~~lA~qvGY~PvFsw~nSiss~IDLa~qG   92 (431)
T PF10443_consen   19 FIVVQGPRGSGKRELVMDHVLKDRK--N----VLVIDCDQIVKARGDAAFIKNLASQVGYFPVFSWMNSISSFIDLAVQG   92 (431)
T ss_pred             EEEEECCCCCCccHHHHHHHHhCCC--C----EEEEEChHhhhccChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhh
Confidence            7899999999999999 77777652  2    77777655   2345566677777665432                  


Q ss_pred             --------cccChhHHHHHH-------HH-------------------Hhc---cCcEEEEEcCCCCcch--------hh
Q 037045           61 --------KELNNDLRADII-------SK-------------------ELN---DRSYVLFLDGVSSEIN--------FK   95 (424)
Q Consensus        61 --------~~~~~~~~~~~l-------~~-------------------~l~---~~~~LlvlD~~~~~~~--------~~   95 (424)
                              ....+.+..+.+       ++                   ++.   .++=+|||||+....+        +.
T Consensus        93 ltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVIdnF~~k~~~~~~iy~~la  172 (431)
T PF10443_consen   93 LTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVIDNFLHKAEENDFIYDKLA  172 (431)
T ss_pred             ccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEcchhccCcccchHHHHHH
Confidence                    111111111111       11                   011   1245899999865321        22


Q ss_pred             hhc-cCCCCCCcEEEEEecchhhhc--------ccCceEEecCCCHHHHHHHHHHHhcccCCC-----------------
Q 037045           96 EIG-MHDDHGRGKVVFACRSREFCW--------QADGVIHVQQLCQREAKKLFWEVVGVHLKK-----------------  149 (424)
Q Consensus        96 ~~~-~~~~~~~~~iiittr~~~~~~--------~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~-----------------  149 (424)
                      +++ ..-..+=.+||+.|.+.....        .....+.+...+++.|.++....+......                 
T Consensus       173 eWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~  252 (431)
T PF10443_consen  173 EWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSA  252 (431)
T ss_pred             HHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence            221 123444567888776644443        667788899999999999999888653110                 


Q ss_pred             -CccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchH
Q 037045          150 -YPDIELVADSIVKECGGMPYMLKLIGKELANQSEVA  185 (424)
Q Consensus       150 -~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~  185 (424)
                       ...........++..||--.-++.+++.++...++.
T Consensus       253 ~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~  289 (431)
T PF10443_consen  253 ENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE  289 (431)
T ss_pred             ccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence             012344566778889999999999999999985544

It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.69  E-value=3e-05  Score=70.01  Aligned_cols=128  Identities=14%  Similarity=0.138  Sum_probs=97.0

Q ss_pred             cceeEEEeeccCCCC--CCCC----cCcccccEEEccCCCCCCCChHH-------------hcccCCCcEEEccCCCCCc
Q 037045          263 AHTKRLSLFGFPSST--LPDM----PNCCEILTLILEGKRLEKLPTSF-------------FDYMCHLQLLDLHETNIGC  323 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~--~~~~----~~~~~L~~L~l~~~~l~~~~~~~-------------~~~~~~L~~L~l~~~~~~~  323 (424)
                      ++|+.|++|.|.+..  ++.+    .+|..|+.|.+.+|.+.......             ...-+.|+++..++|++.+
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            689999999998876  3332    77999999999999987433222             2345789999999999855


Q ss_pred             CC-----hhhhcccccceeeeccccccccc-----CChhhhccCCCCEEEecCCcCcc-----cchhhhcCCCCCEeeec
Q 037045          324 LP-----PSISRLINLNALFLRSSCSLLLQ-----LPAEIGRLQKLEILDVSHTKVQC-----LPSEIGQLIELKYLRVS  388 (424)
Q Consensus       324 ~p-----~~~~~l~~L~~l~l~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~l~l~  388 (424)
                      .+     ..+...+.|+.+.+  ..+.+..     +...+..+++|+.|++..|-++.     +-..+..++.|+.++++
T Consensus       172 ~ga~~~A~~~~~~~~leevr~--~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRL--SQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccHHHHHHHHHhccccceEEE--ecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            54     34566788999988  6666642     23567889999999999997663     33446788899999999


Q ss_pred             cccC
Q 037045          389 RVEN  392 (424)
Q Consensus       389 ~n~~  392 (424)
                      +|.+
T Consensus       250 dcll  253 (382)
T KOG1909|consen  250 DCLL  253 (382)
T ss_pred             cccc
Confidence            9864

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.68  E-value=0.0011  Score=66.87  Aligned_cols=95  Identities=8%  Similarity=0.086  Sum_probs=60.0

Q ss_pred             cCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045           78 DRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK  149 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~  149 (424)
                      ++.-++|||+++....  .+.+  .+-.....+.+|+ ||....+..   +....+++..++.++..+.+...+....  
T Consensus       118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg--  195 (576)
T PRK14965        118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG--  195 (576)
T ss_pred             CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC--
Confidence            3456899999987642  3333  1112223455554 544444443   6678889999999999988887765441  


Q ss_pred             CccHHHHHHHHHHhcCCch-HHHHHH
Q 037045          150 YPDIELVADSIVKECGGMP-YMLKLI  174 (424)
Q Consensus       150 ~~~~~~~~~~I~~~~~g~P-lai~~~  174 (424)
                      ....++.+..|++.++|.. .++..+
T Consensus       196 i~i~~~al~~la~~a~G~lr~al~~L  221 (576)
T PRK14965        196 ISISDAALALVARKGDGSMRDSLSTL  221 (576)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            2233567788999999976 444444

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.68  E-value=0.00052  Score=71.45  Aligned_cols=128  Identities=16%  Similarity=0.219  Sum_probs=70.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCC---CC-ceEEE-EEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-c
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESR---RF-DIIFW-ENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-N   77 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~---~f-~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~   77 (424)
                      +.++|++|+|||++|+.+++......   .+ +..+| ++++.      +.    ..   ..-....++..+.+.+.+ +
T Consensus       206 ~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~------l~----a~---~~~~g~~e~~l~~i~~~~~~  272 (731)
T TIGR02639       206 PLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS------LL----AG---TKYRGDFEERLKAVVSEIEK  272 (731)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH------Hh----hh---ccccchHHHHHHHHHHHHhc
Confidence            57899999999999999999873221   11 33333 22111      11    00   000011122222223222 2


Q ss_pred             cCcEEEEEcCCCCcc----------hhhhhccCCCCCCc-EEEEEecchhhh------c---ccCceEEecCCCHHHHHH
Q 037045           78 DRSYVLFLDGVSSEI----------NFKEIGMHDDHGRG-KVVFACRSREFC------W---QADGVIHVQQLCQREAKK  137 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~----------~~~~~~~~~~~~~~-~iiittr~~~~~------~---~~~~~~~l~~l~~~~~~~  137 (424)
                      .++++|++|+++...          +...+..|.-..|. .+|-+|....+.      +   .....++++.++.++..+
T Consensus       273 ~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~  352 (731)
T TIGR02639       273 EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVK  352 (731)
T ss_pred             cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHH
Confidence            357899999987431          22233223222333 455555442221      1   456689999999999999


Q ss_pred             HHHHHhc
Q 037045          138 LFWEVVG  144 (424)
Q Consensus       138 l~~~~~~  144 (424)
                      +++....
T Consensus       353 il~~~~~  359 (731)
T TIGR02639       353 ILKGLKE  359 (731)
T ss_pred             HHHHHHH
Confidence            9986553

>TIGR02012 tigrfam_recA protein RecA

Probab=97.68  E-value=0.00015  Score=66.79  Aligned_cols=82  Identities=16%  Similarity=0.186  Sum_probs=55.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      +++-|+|++|+||||||.+++....  ..-..++|++.....+..     .++.++...      .....++....+...
T Consensus        56 ~iteI~G~~GsGKTtLaL~~~~~~~--~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~l  128 (321)
T TIGR02012        56 RIIEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETL  128 (321)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence            4788999999999999999988873  334558899877655543     344444332      333445556666555


Q ss_pred             hcc-CcEEEEEcCCCC
Q 037045           76 LND-RSYVLFLDGVSS   90 (424)
Q Consensus        76 l~~-~~~LlvlD~~~~   90 (424)
                      .+. .--++|+|.+..
T Consensus       129 i~~~~~~lIVIDSv~a  144 (321)
T TIGR02012       129 VRSGAVDIIVVDSVAA  144 (321)
T ss_pred             hhccCCcEEEEcchhh
Confidence            544 355899998753

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.67  E-value=8.5e-05  Score=63.45  Aligned_cols=27  Identities=26%  Similarity=0.522  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGES   28 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~   28 (424)
                      +.+.|+|++|+|||+|++++++.....
T Consensus        25 ~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen   25 RNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             --EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            578999999999999999999998644

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.65  E-value=0.00016  Score=66.64  Aligned_cols=81  Identities=16%  Similarity=0.189  Sum_probs=54.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      +++-|+|++|+||||||.+++....  ..-..++|++.....++.     .++.++...      ...+.++....+...
T Consensus        56 ~iteI~Gp~GsGKTtLal~~~~~~~--~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~l  128 (325)
T cd00983          56 RIIEIYGPESSGKTTLALHAIAEAQ--KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSL  128 (325)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHH
Confidence            4788999999999999999988773  334568899977665543     334444322      233455556666555


Q ss_pred             hccC-cEEEEEcCCC
Q 037045           76 LNDR-SYVLFLDGVS   89 (424)
Q Consensus        76 l~~~-~~LlvlD~~~   89 (424)
                      .+.. --++|+|.+.
T Consensus       129 i~s~~~~lIVIDSva  143 (325)
T cd00983         129 VRSGAVDLIVVDSVA  143 (325)
T ss_pred             HhccCCCEEEEcchH
Confidence            5544 4589999864

RecA couples ATP hydrolysis to DNA strand exchange.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.65  E-value=0.00027  Score=58.85  Aligned_cols=40  Identities=28%  Similarity=0.450  Sum_probs=31.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN   44 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~   44 (424)
                      ++.|+|++|+||||++..++....  ..-..++|++......
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~e~~~~   40 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIA--TKGGKVVYVDIEEEIE   40 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHH--hcCCEEEEEECCcchH
Confidence            478999999999999999999883  3445588888765533

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=97.64  E-value=0.00028  Score=63.49  Aligned_cols=55  Identities=20%  Similarity=0.175  Sum_probs=39.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccC---CC-CceEEEEEeccCCCHHHHHHHHHHHhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGES---RR-FDIIFWENINTDGNIRDIQEIILERLK   57 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~---~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~   57 (424)
                      .++=|+|++|+|||+|+.+++-.....   .. -..++|++....++.+.+.+ |++..+
T Consensus        39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~~   97 (256)
T PF08423_consen   39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERFG   97 (256)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHTT
T ss_pred             cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhccc
Confidence            367799999999999999988665321   22 24599999888888887764 555443

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.62  E-value=0.00032  Score=61.27  Aligned_cols=46  Identities=22%  Similarity=0.270  Sum_probs=36.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQE   50 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~   50 (424)
                      +++.|+|++|+|||+++.+++....  .....++|++... .++..+.+
T Consensus        13 ~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~~   58 (209)
T TIGR02237        13 TITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFKQ   58 (209)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHHH
Confidence            4789999999999999999998773  3456799999875 56655554

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.62  E-value=2.3e-05  Score=79.96  Aligned_cols=128  Identities=24%  Similarity=0.273  Sum_probs=96.0

Q ss_pred             ccceeEEEeeccCCCC--CCC--CcCcccccEEEccCCCCCC-CChHHhcccCCCcEEEccCCCCCcCChhhhcccccce
Q 037045          262 DAHTKRLSLFGFPSST--LPD--MPNCCEILTLILEGKRLEK-LPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNA  336 (424)
Q Consensus       262 ~~~l~~L~l~~~~~~~--~~~--~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~  336 (424)
                      +.+|++|+++|...-.  +|.  ...+|+|+.|.+.+-.+.. ........+|+|+.||++++++..+ ..++.|++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            3899999998844332  221  1679999999999887763 2334467799999999999999888 66899999999


Q ss_pred             eeecccccccccCC--hhhhccCCCCEEEecCCcCcccchh-------hhcCCCCCEeeeccccC
Q 037045          337 LFLRSSCSLLLQLP--AEIGRLQKLEILDVSHTKVQCLPSE-------IGQLIELKYLRVSRVEN  392 (424)
Q Consensus       337 l~l~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~lp~~-------i~~l~~L~~l~l~~n~~  392 (424)
                      |.+  .+-......  ..+..|++|++||+|..+...-+..       -..+|+||.|+.|+..+
T Consensus       200 L~m--rnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  200 LSM--RNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             Hhc--cCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            988  565555443  3677899999999998874433321       13688999999998754

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.61  E-value=0.00034  Score=62.35  Aligned_cols=49  Identities=14%  Similarity=0.160  Sum_probs=36.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCC----CceEEEEEeccCCCHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRR----FDIIFWENINTDGNIRDIQE   50 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~   50 (424)
                      +++.|+|++|+|||+++.+++........    ...++|++....++.+.+.+
T Consensus        20 ~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~   72 (235)
T cd01123          20 SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ   72 (235)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence            47899999999999999999866422221    35799999877666555443

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.0015  Score=59.79  Aligned_cols=137  Identities=15%  Similarity=0.257  Sum_probs=80.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh---c-cC
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL---N-DR   79 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l---~-~~   79 (424)
                      |.+||++|+|||-||+.|+++.  ...|     +.+...    .+.++   .+|         +....+++.+   + ..
T Consensus       188 VLLYGPPGTGKTLLAkAVA~~T--~AtF-----IrvvgS----ElVqK---YiG---------EGaRlVRelF~lAreka  244 (406)
T COG1222         188 VLLYGPPGTGKTLLAKAVANQT--DATF-----IRVVGS----ELVQK---YIG---------EGARLVRELFELAREKA  244 (406)
T ss_pred             eEeeCCCCCcHHHHHHHHHhcc--CceE-----EEeccH----HHHHH---Hhc---------cchHHHHHHHHHHhhcC
Confidence            6799999999999999999987  4433     333322    11111   111         1223333333   3 35


Q ss_pred             cEEEEEcCCCCc--------------------chhhhh-ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCC
Q 037045           80 SYVLFLDGVSSE--------------------INFKEI-GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLC  131 (424)
Q Consensus        80 ~~LlvlD~~~~~--------------------~~~~~~-~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~  131 (424)
                      +++|.+|.++..                    +-+.++ +|- ....-|||..|...+...       .-+..+++..=+
T Consensus       245 PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD-~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd  323 (406)
T COG1222         245 PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD-PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPD  323 (406)
T ss_pred             CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC-CCCCeEEEEecCCccccChhhcCCCcccceeecCCCC
Confidence            899999998752                    113333 332 345568887776544443       677888888555


Q ss_pred             HHHHHHHHHHHhccc-CCCCccHHHHHHHHHHhcCCch
Q 037045          132 QREAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       132 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      .+.-.++|+-+..+- ....-+    ...+++.|.|.-
T Consensus       324 ~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~s  357 (406)
T COG1222         324 EEGRAEILKIHTRKMNLADDVD----LELLARLTEGFS  357 (406)
T ss_pred             HHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCc
Confidence            566667777666543 112222    455777777764

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=97.60  E-value=0.00019  Score=61.62  Aligned_cols=110  Identities=16%  Similarity=0.251  Sum_probs=55.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEe----ccC-----CCHHH----HHHHHHHHhcccccccChhHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENI----NTD-----GNIRD----IQEIILERLKVNAKELNNDLR   68 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~----~~~-----~~~~~----~~~~i~~~l~~~~~~~~~~~~   68 (424)
                      .++.+.|++|+|||.||...+-+.-....++.++++.-    +..     -+.++    ....+...+..-.   ..+..
T Consensus        20 ~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~---~~~~~   96 (205)
T PF02562_consen   20 DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF---GKEKL   96 (205)
T ss_dssp             SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS----TTCH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh---ChHhH
Confidence            57899999999999999998877655688888888741    111     11111    1111221211110   11111


Q ss_pred             HHHH---------HHHhccC---cEEEEEcCCCCcc--hhhhhccCCCCCCcEEEEEecch
Q 037045           69 ADII---------SKELNDR---SYVLFLDGVSSEI--NFKEIGMHDDHGRGKVVFACRSR  115 (424)
Q Consensus        69 ~~~l---------~~~l~~~---~~LlvlD~~~~~~--~~~~~~~~~~~~~~~iiittr~~  115 (424)
                      ...+         ..+++++   +.++|+|++++..  ++..+ +...+.+||+|++--..
T Consensus        97 ~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i-lTR~g~~skii~~GD~~  156 (205)
T PF02562_consen   97 EELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI-LTRIGEGSKIIITGDPS  156 (205)
T ss_dssp             HHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH-HTTB-TT-EEEEEE---
T ss_pred             HHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH-HcccCCCcEEEEecCce
Confidence            1111         1234453   6799999999874  45554 45678899999886544

; GO: 0005524 ATP binding; PDB: 3B85_A.

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=97.59  E-value=0.0029  Score=63.57  Aligned_cols=159  Identities=11%  Similarity=0.070  Sum_probs=86.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc---c---ccChhHHHHHHHHHh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA---K---ELNNDLRADIISKEL   76 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~---~~~~~~~~~~l~~~l   76 (424)
                      .+.++|+.|+||||+|+.+++...-....+       +.+++.-...+.+........   +   ....++. ..+....
T Consensus        40 ayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~i-r~i~~~v  111 (559)
T PRK05563         40 AYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGSLMDVIEIDAASNNGVDEI-RDIRDKV  111 (559)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHH-HHHHHHH
Confidence            456799999999999999988763111100       011111122222222111111   0   0111111 1111211


Q ss_pred             -----ccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHHHHHHHHHHHh
Q 037045           77 -----NDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQREAKKLFWEVV  143 (424)
Q Consensus        77 -----~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~  143 (424)
                           .++.-++|||+++...  .+..+  .+-.....+.+|+ ||....+..   +....+++..++.++..+.+...+
T Consensus       112 ~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~  191 (559)
T PRK05563        112 KYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYIL  191 (559)
T ss_pred             hhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHH
Confidence                 2456689999998763  23333  1111122344444 444443333   567788999999999999988877


Q ss_pred             cccCCCCccHHHHHHHHHHhcCCchHHH
Q 037045          144 GVHLKKYPDIELVADSIVKECGGMPYML  171 (424)
Q Consensus       144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai  171 (424)
                      ....  ....++.+..|++.++|.+..+
T Consensus       192 ~~eg--i~i~~~al~~ia~~s~G~~R~a  217 (559)
T PRK05563        192 DKEG--IEYEDEALRLIARAAEGGMRDA  217 (559)
T ss_pred             HHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence            5442  1223456788999999987543

>PRK09354 recA recombinase A; Provisional

Probab=97.58  E-value=0.00025  Score=65.94  Aligned_cols=82  Identities=15%  Similarity=0.180  Sum_probs=56.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      +++-|+|++|+|||||+.+++....  ..-..++|++.-...++.     .++.++...      ...+.++....+...
T Consensus        61 ~IteI~G~~GsGKTtLal~~~~~~~--~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~l  133 (349)
T PRK09354         61 RIVEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTL  133 (349)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence            4788999999999999999998873  344568999987776653     344444332      233455555666555


Q ss_pred             hccC-cEEEEEcCCCC
Q 037045           76 LNDR-SYVLFLDGVSS   90 (424)
Q Consensus        76 l~~~-~~LlvlD~~~~   90 (424)
                      .+.. --++|+|.+..
T Consensus       134 i~s~~~~lIVIDSvaa  149 (349)
T PRK09354        134 VRSGAVDLIVVDSVAA  149 (349)
T ss_pred             hhcCCCCEEEEeChhh
Confidence            5543 45899998753

>PRK10536 hypothetical protein; Provisional

Probab=97.57  E-value=0.00058  Score=60.41  Aligned_cols=114  Identities=16%  Similarity=0.113  Sum_probs=60.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE--e--cc-----CCCHHHHHHHHHHHhcccc-cccChhHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN--I--NT-----DGNIRDIQEIILERLKVNA-KELNNDLRADI   71 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~--~--~~-----~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~   71 (424)
                      .+|.+.|++|+|||+||..++.+.-....|+.++-..  +  +.     +-+.++...-.+.-+...- .....+.....
T Consensus        75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~~~~~~~  154 (262)
T PRK10536         75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYC  154 (262)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence            4789999999999999999998643234455444432  1  11     1122222221111111000 00000010101


Q ss_pred             -----------HHHHhccC---cEEEEEcCCCCcch--hhhhccCCCCCCcEEEEEecchh
Q 037045           72 -----------ISKELNDR---SYVLFLDGVSSEIN--FKEIGMHDDHGRGKVVFACRSRE  116 (424)
Q Consensus        72 -----------l~~~l~~~---~~LlvlD~~~~~~~--~~~~~~~~~~~~~~iiittr~~~  116 (424)
                                 --.+++++   .-++|+|+++....  +..+ +...+.++++|++--...
T Consensus       155 ~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~-ltR~g~~sk~v~~GD~~Q  214 (262)
T PRK10536        155 LRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMF-LTRLGENVTVIVNGDITQ  214 (262)
T ss_pred             HHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHH-HhhcCCCCEEEEeCChhh
Confidence                       12245665   45999999998753  2222 346778999998765543

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.56  E-value=0.00032  Score=62.11  Aligned_cols=44  Identities=20%  Similarity=0.265  Sum_probs=34.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDI   48 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~   48 (424)
                      +++.|+|++|+|||++|.+++....  .....++|++.. ..+.+.+
T Consensus        24 ~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e-~~~~~r~   67 (225)
T PRK09361         24 TITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE-GLSPERF   67 (225)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC-CCCHHHH
Confidence            4789999999999999999998773  334678999987 5555444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.55  E-value=3.8e-05  Score=78.34  Aligned_cols=131  Identities=20%  Similarity=0.182  Sum_probs=76.0

Q ss_pred             ccccEEEccCCCCC--CCChHHhcccCCCcEEEccCCCC--CcCChhhhcccccceeeecccccccccCChhhhccCCCC
Q 037045          285 CEILTLILEGKRLE--KLPTSFFDYMCHLQLLDLHETNI--GCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLE  360 (424)
Q Consensus       285 ~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~~--~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~  360 (424)
                      .+|+.|++++...-  +.+......+|+|+.|.+.+-.+  +++-.-...+++|..||+  +++.+..+ ..++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDI--S~TnI~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDI--SGTNISNL-SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeec--CCCCccCc-HHHhccccHH
Confidence            45777777764432  34444444567777777777655  333344556777777777  66666666 5677777777


Q ss_pred             EEEecCCcCcccc--hhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045          361 ILDVSHTKVQCLP--SEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       361 ~L~l~~~~i~~lp--~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                      .|.+.+-.+..-+  ..+.++++|+.|++|........      .-....++--..|++||.||+|
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~------~ii~qYlec~~~LpeLrfLDcS  258 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT------KIIEQYLECGMVLPELRFLDCS  258 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccch------HHHHHHHHhcccCccccEEecC
Confidence            7776655544322  23567777777777775432110      0011122223447777777765

>PRK12377 putative replication protein; Provisional

Probab=97.55  E-value=0.00025  Score=63.09  Aligned_cols=97  Identities=12%  Similarity=0.144  Sum_probs=53.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -+.|+|++|+|||+||..+++...  ...-.++++++.      ++...+-......   ....    .+.+.+ .+--|
T Consensus       103 ~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~~~---~~~~----~~l~~l-~~~dL  166 (248)
T PRK12377        103 NFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYDNG---QSGE----KFLQEL-CKVDL  166 (248)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHhcc---chHH----HHHHHh-cCCCE
Confidence            478999999999999999999984  333345665543      4444443332211   1111    122222 34559


Q ss_pred             EEEcCCCCc--chhhhh-ccC----CCCCCcEEEEEecch
Q 037045           83 LFLDGVSSE--INFKEI-GMH----DDHGRGKVVFACRSR  115 (424)
Q Consensus        83 lvlD~~~~~--~~~~~~-~~~----~~~~~~~iiittr~~  115 (424)
                      |||||+...  ..|+.- .+.    ...+...+||||...
T Consensus       167 LiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~  206 (248)
T PRK12377        167 LVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN  206 (248)
T ss_pred             EEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            999999433  333322 111    223334567777543

>PRK08181 transposase; Validated

Probab=97.55  E-value=0.00016  Score=65.13  Aligned_cols=97  Identities=15%  Similarity=0.236  Sum_probs=53.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -+.|+|++|+|||.||..+++...  .....++|+.      ..+++..+.....    ......   .+ +.+ .+-=|
T Consensus       108 nlll~Gp~GtGKTHLa~Aia~~a~--~~g~~v~f~~------~~~L~~~l~~a~~----~~~~~~---~l-~~l-~~~dL  170 (269)
T PRK08181        108 NLLLFGPPGGGKSHLAAAIGLALI--ENGWRVLFTR------TTDLVQKLQVARR----ELQLES---AI-AKL-DKFDL  170 (269)
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHH--HcCCceeeee------HHHHHHHHHHHHh----CCcHHH---HH-HHH-hcCCE
Confidence            378999999999999999998873  3333456654      3445555533211    111111   12 222 13349


Q ss_pred             EEEcCCCCcc--hh-hhhccC---CCCCCcEEEEEecchh
Q 037045           83 LFLDGVSSEI--NF-KEIGMH---DDHGRGKVVFACRSRE  116 (424)
Q Consensus        83 lvlD~~~~~~--~~-~~~~~~---~~~~~~~iiittr~~~  116 (424)
                      |||||+....  .+ ....+.   ....+..+||||+...
T Consensus       171 LIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~  210 (269)
T PRK08181        171 LILDDLAYVTKDQAETSVLFELISARYERRSILITANQPF  210 (269)
T ss_pred             EEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCH
Confidence            9999986431  11 111111   1112346888887654

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.55  E-value=0.0016  Score=68.05  Aligned_cols=149  Identities=15%  Similarity=0.205  Sum_probs=79.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL   83 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll   83 (424)
                      +.++|++|+|||++|+.+++..  ...|     +.+...        +++...    ...........+...-....++|
T Consensus       490 iLL~GppGtGKT~lakalA~e~--~~~f-----i~v~~~--------~l~~~~----vGese~~i~~~f~~A~~~~p~ii  550 (733)
T TIGR01243       490 VLLFGPPGTGKTLLAKAVATES--GANF-----IAVRGP--------EILSKW----VGESEKAIREIFRKARQAAPAII  550 (733)
T ss_pred             EEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEehH--------HHhhcc----cCcHHHHHHHHHHHHHhcCCEEE
Confidence            6889999999999999999987  3333     222211        111110    01111111222222223467999


Q ss_pred             EEcCCCCcc--------------hhhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHHHH
Q 037045           84 FLDGVSSEI--------------NFKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAKKL  138 (424)
Q Consensus        84 vlD~~~~~~--------------~~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~~l  138 (424)
                      +||+++...              ...++  .+.  ....+.-||.||.......       .-+..+.+...+.++-.++
T Consensus       551 fiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i  630 (733)
T TIGR01243       551 FFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEI  630 (733)
T ss_pred             EEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHH
Confidence            999987531              11212  011  1222334555554433322       3567788888899999999


Q ss_pred             HHHHhcccCCCCccHHHHHHHHHHhcCCch-HHHHHH
Q 037045          139 FWEVVGVHLKKYPDIELVADSIVKECGGMP-YMLKLI  174 (424)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P-lai~~~  174 (424)
                      |+..........   ......+++.+.|+- ..|..+
T Consensus       631 ~~~~~~~~~~~~---~~~l~~la~~t~g~sgadi~~~  664 (733)
T TIGR01243       631 FKIHTRSMPLAE---DVDLEELAEMTEGYTGADIEAV  664 (733)
T ss_pred             HHHHhcCCCCCc---cCCHHHHHHHcCCCCHHHHHHH
Confidence            877664431111   112456778887764 334433

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.53  E-value=0.00028  Score=66.71  Aligned_cols=113  Identities=22%  Similarity=0.299  Sum_probs=73.1

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccC-CCCCCCChHHhcccCCCcEEEccCC-CCCcCChhhhcccccceeeec
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEG-KRLEKLPTSFFDYMCHLQLLDLHET-NIGCLPPSISRLINLNALFLR  340 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~p~~~~~l~~L~~l~l~  340 (424)
                      .++++|++++|.++.+|.+  -++|+.|.+++ +.++.+|.. +  .++|++|++++| .+..+|..      |+.|.+ 
T Consensus        52 ~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L-  119 (426)
T PRK15386         52 RASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSLEI-  119 (426)
T ss_pred             cCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cceEEe-
Confidence            6788999999988888732  23699999986 555566643 2  257889999888 56667654      344444 


Q ss_pred             cccc---ccccCChhhhcc------------------CCCCEEEecCCcCcccchhhhcCCCCCEeeeccc
Q 037045          341 SSCS---LLLQLPAEIGRL------------------QKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRV  390 (424)
Q Consensus       341 ~~~~---~~~~lp~~~~~l------------------~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n  390 (424)
                       .++   .+..+|+++..|                  .+|+.|++++|....+|..+.  .+|+.|.++.|
T Consensus       120 -~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        120 -KGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             -CCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence             222   345666555433                  267778887777555554333  36777777654

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=97.52  E-value=0.0011  Score=62.19  Aligned_cols=42  Identities=21%  Similarity=0.355  Sum_probs=30.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCC-CceEEEEEeccCCC
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRR-FDIIFWENINTDGN   44 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~   44 (424)
                      +|+|.|..|+||||+.+++.+..+.... --.++|++.....+
T Consensus        22 ~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~   64 (325)
T PF07693_consen   22 VIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDG   64 (325)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCC
Confidence            7999999999999999999999953311 22355555444433

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.0019  Score=62.95  Aligned_cols=118  Identities=14%  Similarity=0.211  Sum_probs=72.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh----ccC
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL----NDR   79 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~   79 (424)
                      |.+||++|+|||-||+.|++..  ..+|     +.+..+        ++++..-        ++-...+++.+    ...
T Consensus       548 vLL~GPPGCGKTLlAKAVANEa--g~NF-----isVKGP--------ELlNkYV--------GESErAVR~vFqRAR~sa  604 (802)
T KOG0733|consen  548 VLLCGPPGCGKTLLAKAVANEA--GANF-----ISVKGP--------ELLNKYV--------GESERAVRQVFQRARASA  604 (802)
T ss_pred             eEEeCCCCccHHHHHHHHhhhc--cCce-----EeecCH--------HHHHHHh--------hhHHHHHHHHHHHhhcCC
Confidence            6789999999999999999988  4444     444443        2222211        11122223322    246


Q ss_pred             cEEEEEcCCCCc-------------chhhhh----ccCCCCCCcEEEEEecchhh-hc------ccCceEEecCCCHHHH
Q 037045           80 SYVLFLDGVSSE-------------INFKEI----GMHDDHGRGKVVFACRSREF-CW------QADGVIHVQQLCQREA  135 (424)
Q Consensus        80 ~~LlvlD~~~~~-------------~~~~~~----~~~~~~~~~~iiittr~~~~-~~------~~~~~~~l~~l~~~~~  135 (424)
                      +|+|.||.++..             ..+.++    .-.....|--||-.|...++ -+      .-+..+.++.-+.+|-
T Consensus       605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR  684 (802)
T KOG0733|consen  605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER  684 (802)
T ss_pred             CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence            899999999763             113333    11133445556655543333 22      6677778888888999


Q ss_pred             HHHHHHHhc
Q 037045          136 KKLFWEVVG  144 (424)
Q Consensus       136 ~~l~~~~~~  144 (424)
                      .++++....
T Consensus       685 ~~ILK~~tk  693 (802)
T KOG0733|consen  685 VAILKTITK  693 (802)
T ss_pred             HHHHHHHhc
Confidence            999988876

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.51  E-value=0.00037  Score=65.87  Aligned_cols=98  Identities=22%  Similarity=0.357  Sum_probs=70.4

Q ss_pred             cCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCC-CCCcCChhhhcccccceeeecccccccccCChhhhccCCCC
Q 037045          282 PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHET-NIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLE  360 (424)
Q Consensus       282 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~  360 (424)
                      ..|.+++.|++++|.++.+|.  +  -.+|+.|.+++| .+..+|..+  ..+|++|++. .|..+..+|..      |.
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls-~Cs~L~sLP~s------Le  115 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVC-HCPEISGLPES------VR  115 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchh--hhhhhheEcc-Ccccccccccc------cc
Confidence            457889999999999998883  2  246999999986 457777655  4689999994 55477777754      55


Q ss_pred             EEEecCCc---CcccchhhhcC------------------CCCCEeeeccccC
Q 037045          361 ILDVSHTK---VQCLPSEIGQL------------------IELKYLRVSRVEN  392 (424)
Q Consensus       361 ~L~l~~~~---i~~lp~~i~~l------------------~~L~~l~l~~n~~  392 (424)
                      .|++.++.   +..+|+++..|                  ++|++|.+++|..
T Consensus       116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~  168 (426)
T PRK15386        116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN  168 (426)
T ss_pred             eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCc
Confidence            55565543   45677665444                  3688899888764

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.50  E-value=0.0036  Score=58.13  Aligned_cols=142  Identities=11%  Similarity=0.109  Sum_probs=79.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-----CCHHHHHHHHHHHhcccccccChhHHHHHHHHH-
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-----GNIRDIQEIILERLKVNAKELNNDLRADIISKE-   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-   75 (424)
                      +.++|||++|+|||.+|+.+++...  -.|   +-++.+.-     -+.+..+++++..-                .+. 
T Consensus       149 lgllL~GPPGcGKTllAraiA~elg--~~~---i~vsa~eL~sk~vGEsEk~IR~~F~~A----------------~~~a  207 (413)
T PLN00020        149 LILGIWGGKGQGKSFQCELVFKKMG--IEP---IVMSAGELESENAGEPGKLIRQRYREA----------------ADII  207 (413)
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHcC--CCe---EEEEHHHhhcCcCCcHHHHHHHHHHHH----------------HHHh
Confidence            5789999999999999999999983  332   33332221     13344444443321                111 


Q ss_pred             -hccCcEEEEEcCCCCcc--------h------hhhh----c------cC------CCCCCcEEEEEecchhhhc-----
Q 037045           76 -LNDRSYVLFLDGVSSEI--------N------FKEI----G------MH------DDHGRGKVVFACRSREFCW-----  119 (424)
Q Consensus        76 -l~~~~~LlvlD~~~~~~--------~------~~~~----~------~~------~~~~~~~iiittr~~~~~~-----  119 (424)
                       -+++.++|+||+++...        .      ...+    .      ++      ....+-.||.||.......     
T Consensus       208 ~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlR  287 (413)
T PLN00020        208 KKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIR  287 (413)
T ss_pred             hccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcC
Confidence             13578999999987421        0      0122    0      00      1233456777776544333     


Q ss_pred             --ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHH
Q 037045          120 --QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYM  170 (424)
Q Consensus       120 --~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Pla  170 (424)
                        ..+..+  ..-+.++-.++++....... ..   .....+|++...|-|+.
T Consensus       288 pGRfDk~i--~lPd~e~R~eIL~~~~r~~~-l~---~~dv~~Lv~~f~gq~~D  334 (413)
T PLN00020        288 DGRMEKFY--WAPTREDRIGVVHGIFRDDG-VS---REDVVKLVDTFPGQPLD  334 (413)
T ss_pred             CCCCCcee--CCCCHHHHHHHHHHHhccCC-CC---HHHHHHHHHcCCCCCch
Confidence              223333  33466777777776665432 11   24556688888887753

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.47  E-value=9.9e-05  Score=58.27  Aligned_cols=23  Identities=39%  Similarity=0.632  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|+|.|++|+||||+|+.+++..
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999986

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.47  E-value=4.1e-05  Score=67.72  Aligned_cols=26  Identities=12%  Similarity=0.184  Sum_probs=21.9

Q ss_pred             CCCCCCCCcChhhhhccccCceeecC
Q 037045          399 ADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       399 ~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                      +.+.+.+|.++-++..+++|..|.++
T Consensus       232 ~~~~idswasvD~Ln~f~~l~dlRv~  257 (418)
T KOG2982|consen  232 GANNIDSWASVDALNGFPQLVDLRVS  257 (418)
T ss_pred             cccccccHHHHHHHcCCchhheeecc
Confidence            56677899999999999999988764

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.0019  Score=64.60  Aligned_cols=139  Identities=19%  Similarity=0.268  Sum_probs=77.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHH-HhcccccccChhHHHHHHHHHhccCcEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILE-RLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~-~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      |.+||++|+|||-+|+.|+....       .-|+++..+        ++++ .+|.     +++...+.+.+.-..++|+
T Consensus       708 ILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP--------ELLNMYVGq-----SE~NVR~VFerAR~A~PCV  767 (953)
T KOG0736|consen  708 ILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP--------ELLNMYVGQ-----SEENVREVFERARSAAPCV  767 (953)
T ss_pred             eEEECCCCCchHHHHHHHHhhce-------eeEEeecCH--------HHHHHHhcc-----hHHHHHHHHHHhhccCCeE
Confidence            67899999999999999999883       455666555        2222 2221     2222333333333457999


Q ss_pred             EEEcCCCCc-------------------chhhhh-ccCCCCCCcEEEE--Eecchhhhc------ccCceEEecCCCHHH
Q 037045           83 LFLDGVSSE-------------------INFKEI-GMHDDHGRGKVVF--ACRSREFCW------QADGVIHVQQLCQRE  134 (424)
Q Consensus        83 lvlD~~~~~-------------------~~~~~~-~~~~~~~~~~iii--ttr~~~~~~------~~~~~~~l~~l~~~~  134 (424)
                      |.||++++.                   +-+.++ ++.......-.||  |.|..-.-+      ..++-+.++.=+.++
T Consensus       768 IFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~e  847 (953)
T KOG0736|consen  768 IFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAE  847 (953)
T ss_pred             EEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHH
Confidence            999999874                   124444 4443333333333  334322222      566777788766666


Q ss_pred             HHHHHHHHhccc--CCCCccHHHHHHHHHHhcCC
Q 037045          135 AKKLFWEVVGVH--LKKYPDIELVADSIVKECGG  166 (424)
Q Consensus       135 ~~~l~~~~~~~~--~~~~~~~~~~~~~I~~~~~g  166 (424)
                      ...-..+...+.  -++.-    ...+|++.|.-
T Consensus       848 sk~~vL~AlTrkFkLdedV----dL~eiAk~cp~  877 (953)
T KOG0736|consen  848 SKLRVLEALTRKFKLDEDV----DLVEIAKKCPP  877 (953)
T ss_pred             HHHHHHHHHHHHccCCCCc----CHHHHHhhCCc
Confidence            554444433222  11222    24567777754

>PRK04132 replication factor C small subunit; Provisional

Probab=97.47  E-value=0.0033  Score=65.29  Aligned_cols=146  Identities=11%  Similarity=0.036  Sum_probs=92.0

Q ss_pred             CCCCcHHHHHHHHHHhhccCCCC-ceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEEEEcC
Q 037045            9 PLGVGKTTIMENLHHSIGESRRF-DIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVLFLDG   87 (424)
Q Consensus         9 ~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlvlD~   87 (424)
                      |.++||||+|..++++.-- +.+ ..++-++.+...+.+.+. ++...+......             -..+.-++|+|+
T Consensus       574 Ph~lGKTT~A~ala~~l~g-~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~~-------------~~~~~KVvIIDE  638 (846)
T PRK04132        574 PTVLHNTTAALALARELFG-ENWRHNFLELNASDERGINVIR-EKVKEFARTKPI-------------GGASFKIIFLDE  638 (846)
T ss_pred             CCcccHHHHHHHHHHhhhc-ccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCCc-------------CCCCCEEEEEEC
Confidence            7889999999999998632 222 236677777655555443 332222111000             012457999999


Q ss_pred             CCCcc--hhhhh-ccC-CCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHH
Q 037045           88 VSSEI--NFKEI-GMH-DDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADS  159 (424)
Q Consensus        88 ~~~~~--~~~~~-~~~-~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  159 (424)
                      ++...  ..+.+ .+. .....+++|++|.+.....    +....+.+.+++.++..+.+.+.+....  ....++....
T Consensus       639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg--i~i~~e~L~~  716 (846)
T PRK04132        639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG--LELTEEGLQA  716 (846)
T ss_pred             cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC--CCCCHHHHHH
Confidence            99875  33333 111 2235666666665543332    7788999999999999988887765431  1122557889


Q ss_pred             HHHhcCCchHHH
Q 037045          160 IVKECGGMPYML  171 (424)
Q Consensus       160 I~~~~~g~Plai  171 (424)
                      |++.++|.+...
T Consensus       717 Ia~~s~GDlR~A  728 (846)
T PRK04132        717 ILYIAEGDMRRA  728 (846)
T ss_pred             HHHHcCCCHHHH
Confidence            999999988443

>PRK06526 transposase; Provisional

Probab=97.47  E-value=0.00011  Score=65.78  Aligned_cols=72  Identities=18%  Similarity=0.211  Sum_probs=41.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -+.|+|++|+|||+||..++..... ..+ .+.|+      +..++...+.....    .   +.....+.+ + .+.-+
T Consensus       100 nlll~Gp~GtGKThLa~al~~~a~~-~g~-~v~f~------t~~~l~~~l~~~~~----~---~~~~~~l~~-l-~~~dl  162 (254)
T PRK06526        100 NVVFLGPPGTGKTHLAIGLGIRACQ-AGH-RVLFA------TAAQWVARLAAAHH----A---GRLQAELVK-L-GRYPL  162 (254)
T ss_pred             eEEEEeCCCCchHHHHHHHHHHHHH-CCC-chhhh------hHHHHHHHHHHHHh----c---CcHHHHHHH-h-ccCCE
Confidence            4789999999999999999987742 222 23442      33445544433211    1   111222222 2 23358


Q ss_pred             EEEcCCCCc
Q 037045           83 LFLDGVSSE   91 (424)
Q Consensus        83 lvlD~~~~~   91 (424)
                      |||||+...
T Consensus       163 LIIDD~g~~  171 (254)
T PRK06526        163 LIVDEVGYI  171 (254)
T ss_pred             EEEcccccC
Confidence            999999753

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=97.46  E-value=0.0015  Score=56.05  Aligned_cols=77  Identities=22%  Similarity=0.230  Sum_probs=48.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-ccCc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-NDRS   80 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~   80 (424)
                      +=+.|.||+|+||||-+..+++..--..+-+++.-.+.+.....+-+..+|-..-.              -+-.+ .++.
T Consensus        49 P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ--------------~kv~lp~grh  114 (333)
T KOG0991|consen   49 PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQ--------------KKVTLPPGRH  114 (333)
T ss_pred             CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHH--------------hhccCCCCce
Confidence            44789999999999999999998853334466666666665555444433321100              00011 2456


Q ss_pred             EEEEEcCCCCcc
Q 037045           81 YVLFLDGVSSEI   92 (424)
Q Consensus        81 ~LlvlD~~~~~~   92 (424)
                      -++|+|+++++-
T Consensus       115 KIiILDEADSMT  126 (333)
T KOG0991|consen  115 KIIILDEADSMT  126 (333)
T ss_pred             eEEEeeccchhh
Confidence            689999999863

>PRK06921 hypothetical protein; Provisional

Probab=97.45  E-value=0.00069  Score=61.29  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=27.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCC-CceEEEEEe
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRR-FDIIFWENI   39 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~   39 (424)
                      -+.++|+.|+|||.||..+++...  .. ...++|+..
T Consensus       119 ~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~  154 (266)
T PRK06921        119 SIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF  154 (266)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence            478999999999999999999874  33 344667664

>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.45  E-value=0.009  Score=52.78  Aligned_cols=180  Identities=13%  Similarity=0.170  Sum_probs=105.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhcc----CCCCceEEEEEeccC---------------------CCHHHHHHHHHHHhcc
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGE----SRRFDIIFWENINTD---------------------GNIRDIQEIILERLKV   58 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~---------------------~~~~~~~~~i~~~l~~   58 (424)
                      ..++|++|.||-|.+-.+.+...-    +-+-+..-|.+-+..                     ....-+.++++.++..
T Consensus        37 ll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQ  116 (351)
T KOG2035|consen   37 LLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQ  116 (351)
T ss_pred             EEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHh
Confidence            568999999999988777776532    111222333321111                     1223355555555543


Q ss_pred             cccccChhHHHHHHHHHhccCcE-EEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecc--hhhhc--ccCceEEecC
Q 037045           59 NAKELNNDLRADIISKELNDRSY-VLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRS--REFCW--QADGVIHVQQ  129 (424)
Q Consensus        59 ~~~~~~~~~~~~~l~~~l~~~~~-LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~--~~~~~--~~~~~~~l~~  129 (424)
                      ......           ..++.+ ++|+-.+++..  ....+  .+-...+.|++|+...+  +...+  +..-.+++..
T Consensus       117 t~qie~-----------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpa  185 (351)
T KOG2035|consen  117 TQQIET-----------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPA  185 (351)
T ss_pred             hcchhh-----------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCC
Confidence            321111           112344 77777777652  11122  12245667888875443  33333  7777889999


Q ss_pred             CCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCC----------cchHHHHHHHHHhhh
Q 037045          130 LCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQ----------SEVAIWRATADELRL  196 (424)
Q Consensus       130 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~----------~~~~~~~~~~~~l~~  196 (424)
                      .+++|....+.+...++.-.-+  .+.+++|++.++|+-.---.+...++-+          ...-+|+-.+.+...
T Consensus       186 ps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~  260 (351)
T KOG2035|consen  186 PSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIAR  260 (351)
T ss_pred             CCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHH
Confidence            9999999999999887632333  7789999999999864333333332211          234568887777666

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=97.44  E-value=0.0063  Score=56.35  Aligned_cols=86  Identities=12%  Similarity=0.079  Sum_probs=55.7

Q ss_pred             CcEEEEEcCCCCcchh--hhh-c-cCCCCCCcEEEEEecc-hhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCCC
Q 037045           79 RSYVLFLDGVSSEINF--KEI-G-MHDDHGRGKVVFACRS-REFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKKY  150 (424)
Q Consensus        79 ~~~LlvlD~~~~~~~~--~~~-~-~~~~~~~~~iiittr~-~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~  150 (424)
                      ++-++|||+++.+..-  ..+ . +-.-..++.+|++|.. ..+.+   +....+.+...+.+++.+.+... +.   . 
T Consensus       113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~---~-  187 (319)
T PRK08769        113 IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-GV---S-  187 (319)
T ss_pred             CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-CC---C-
Confidence            4569999999987432  222 1 1122235666666654 44443   77888999999999998888653 11   1 


Q ss_pred             ccHHHHHHHHHHhcCCchHHHH
Q 037045          151 PDIELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       151 ~~~~~~~~~I~~~~~g~Plai~  172 (424)
                         +..+..++..++|.|....
T Consensus       188 ---~~~a~~~~~l~~G~p~~A~  206 (319)
T PRK08769        188 ---ERAAQEALDAARGHPGLAA  206 (319)
T ss_pred             ---hHHHHHHHHHcCCCHHHHH
Confidence               2346678999999997543

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=97.42  E-value=0.0064  Score=56.41  Aligned_cols=151  Identities=7%  Similarity=0.035  Sum_probs=82.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc--------cccChhHHHHHHHHH
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA--------KELNNDLRADIISKE   75 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~~~l~~~   75 (424)
                      +.++|+.|+||+++|..+++..-=.....       ...+..-...+.+...-....        .....++.. .+.+.
T Consensus        27 ~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR-~l~~~   98 (325)
T PRK06871         27 LLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVR-EINEK   98 (325)
T ss_pred             EEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHH-HHHHH
Confidence            56899999999999999998763111110       001111111222211100000        011122222 22222


Q ss_pred             h-----ccCcEEEEEcCCCCcchhhhhcc----CCCCCCcEEEEEecc-hhhhc---ccCceEEecCCCHHHHHHHHHHH
Q 037045           76 L-----NDRSYVLFLDGVSSEINFKEIGM----HDDHGRGKVVFACRS-REFCW---QADGVIHVQQLCQREAKKLFWEV  142 (424)
Q Consensus        76 l-----~~~~~LlvlD~~~~~~~~~~~~~----~~~~~~~~iiittr~-~~~~~---~~~~~~~l~~l~~~~~~~l~~~~  142 (424)
                      +     .+++-++|+|+++.+..-..-++    -.--.++.+|++|.+ ..+.+   +....+.+.++++++..+.+...
T Consensus        99 ~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~  178 (325)
T PRK06871         99 VSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQ  178 (325)
T ss_pred             HhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHH
Confidence            2     23556889999998753222211    122334455555554 44443   66889999999999999888776


Q ss_pred             hcccCCCCccHHHHHHHHHHhcCCchH
Q 037045          143 VGVHLKKYPDIELVADSIVKECGGMPY  169 (424)
Q Consensus       143 ~~~~~~~~~~~~~~~~~I~~~~~g~Pl  169 (424)
                      ....       ...+...++.++|.|.
T Consensus       179 ~~~~-------~~~~~~~~~l~~g~p~  198 (325)
T PRK06871        179 SSAE-------ISEILTALRINYGRPL  198 (325)
T ss_pred             hccC-------hHHHHHHHHHcCCCHH
Confidence            4221       1235567888999995

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=97.41  E-value=0.0061  Score=53.40  Aligned_cols=23  Identities=26%  Similarity=0.744  Sum_probs=21.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhc
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +.+||..|+|||++++.+.+.+.
T Consensus        55 vLL~G~rGtGKSSlVkall~~y~   77 (249)
T PF05673_consen   55 VLLWGARGTGKSSLVKALLNEYA   77 (249)
T ss_pred             eEEecCCCCCHHHHHHHHHHHHh
Confidence            57899999999999999999884

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.41  E-value=0.0011  Score=69.82  Aligned_cols=127  Identities=19%  Similarity=0.149  Sum_probs=68.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCC---CC-ceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-cc
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESR---RF-DIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-ND   78 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~---~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~   78 (424)
                      +.++|++|+|||++|+.+++......   .. +..+|.-     +...++       ....-....++..+.+.+.+ ..
T Consensus       203 ~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l~-------ag~~~~ge~e~rl~~i~~~~~~~  270 (821)
T CHL00095        203 PILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLLL-------AGTKYRGEFEERLKRIFDEIQEN  270 (821)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHHh-------ccCCCccHHHHHHHHHHHHHHhc
Confidence            57999999999999999999874211   11 2344421     111111       11110111222233232222 34


Q ss_pred             CcEEEEEcCCCCcc---------hhhhhccCCCCCC-cEEEEEecchhhh----c-----ccCceEEecCCCHHHHHHHH
Q 037045           79 RSYVLFLDGVSSEI---------NFKEIGMHDDHGR-GKVVFACRSREFC----W-----QADGVIHVQQLCQREAKKLF  139 (424)
Q Consensus        79 ~~~LlvlD~~~~~~---------~~~~~~~~~~~~~-~~iiittr~~~~~----~-----~~~~~~~l~~l~~~~~~~l~  139 (424)
                      ++++|+||+++...         +...+..|.-..| -++|-+|....+.    .     .....+.++..+.++...++
T Consensus       271 ~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aIL  350 (821)
T CHL00095        271 NNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEIL  350 (821)
T ss_pred             CCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHH
Confidence            68999999986431         2233322322222 3556555544321    1     55667889999999988888


Q ss_pred             HHH
Q 037045          140 WEV  142 (424)
Q Consensus       140 ~~~  142 (424)
                      ...
T Consensus       351 r~l  353 (821)
T CHL00095        351 FGL  353 (821)
T ss_pred             HHH
Confidence            654

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.0014  Score=61.91  Aligned_cols=160  Identities=14%  Similarity=0.220  Sum_probs=87.6

Q ss_pred             EEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEEE
Q 037045            5 CIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVLF   84 (424)
Q Consensus         5 ~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Llv   84 (424)
                      .++||+|+||||++..+++..    .|+. .=+.++...+..+ +++++...                     ..+-+||
T Consensus       239 LLYGPPGTGKSS~IaAmAn~L----~ydI-ydLeLt~v~~n~d-Lr~LL~~t---------------------~~kSIiv  291 (457)
T KOG0743|consen  239 LLYGPPGTGKSSFIAAMANYL----NYDI-YDLELTEVKLDSD-LRHLLLAT---------------------PNKSILL  291 (457)
T ss_pred             eeeCCCCCCHHHHHHHHHhhc----CCce-EEeeeccccCcHH-HHHHHHhC---------------------CCCcEEE
Confidence            589999999999999999977    3442 2233433333333 44444432                     2345667


Q ss_pred             EcCCCCcch--------------------hhhh-ccC-CCCC---CcEEE-EEecchhhhc-------ccCceEEecCCC
Q 037045           85 LDGVSSEIN--------------------FKEI-GMH-DDHG---RGKVV-FACRSREFCW-------QADGVIHVQQLC  131 (424)
Q Consensus        85 lD~~~~~~~--------------------~~~~-~~~-~~~~---~~~ii-ittr~~~~~~-------~~~~~~~l~~l~  131 (424)
                      |.|++...+                    +.-+ .+. .-++   +-+|| .||...+...       ..+..++|.--+
T Consensus       292 IEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCt  371 (457)
T KOG0743|consen  292 IEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCT  371 (457)
T ss_pred             EeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCC
Confidence            777664311                    1111 000 1111   22555 5776655443       667778899999


Q ss_pred             HHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH-hCCcc-hHHHHHHHHHhhh
Q 037045          132 QREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKEL-ANQSE-VAIWRATADELRL  196 (424)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l-~~~~~-~~~~~~~~~~l~~  196 (424)
                      .+....|+.++++.+. +.+    .+.+|.+...+.-+.=..+|..+ ..+.+ ....+.+.+.+..
T Consensus       372 f~~fK~La~nYL~~~~-~h~----L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~  433 (457)
T KOG0743|consen  372 FEAFKTLASNYLGIEE-DHR----LFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALES  433 (457)
T ss_pred             HHHHHHHHHHhcCCCC-Ccc----hhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence            9999999999987642 233    44445444455433334444443 33322 2333444444444

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=97.39  E-value=0.0041  Score=61.73  Aligned_cols=172  Identities=17%  Similarity=0.114  Sum_probs=104.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhcc------CCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGE------SRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~   75 (424)
                      +.+-|.|.+|+|||..+..|.+....      ...|+ -+.|+.-.-.++.++...|+.++.....  ........+...
T Consensus       423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~~I~~~lsg~~~--~~~~al~~L~~~  499 (767)
T KOG1514|consen  423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYEKIWEALSGERV--TWDAALEALNFR  499 (767)
T ss_pred             eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHHHHHHhcccCcc--cHHHHHHHHHHh
Confidence            36789999999999999999997642      22333 3455555567899999999999987651  122233344444


Q ss_pred             hc-----cCcEEEEEcCCCCcc-----hhhhhccCCCCCCcEEEEEe-cchhhhc-----------ccCceEEecCCCHH
Q 037045           76 LN-----DRSYVLFLDGVSSEI-----NFKEIGMHDDHGRGKVVFAC-RSREFCW-----------QADGVIHVQQLCQR  133 (424)
Q Consensus        76 l~-----~~~~LlvlD~~~~~~-----~~~~~~~~~~~~~~~iiitt-r~~~~~~-----------~~~~~~~l~~l~~~  133 (424)
                      +.     .+.+++++|+++...     .+-.+.-.+...++|++|.+ -+-...+           -+...+.+.+.+.+
T Consensus       500 f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~  579 (767)
T KOG1514|consen  500 FTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHE  579 (767)
T ss_pred             hccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHH
Confidence            32     357999999987642     23333112456677766543 2111111           45567777888888


Q ss_pred             HHHHHHHHHhccc-CCCCccHHHHHHHHHHhcCCchHHHHHHHH
Q 037045          134 EAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMPYMLKLIGK  176 (424)
Q Consensus       134 ~~~~l~~~~~~~~-~~~~~~~~~~~~~I~~~~~g~Plai~~~a~  176 (424)
                      +-.++...++... .-.....+-++++|+.-.|..-.|+.++-.
T Consensus       580 qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~R  623 (767)
T KOG1514|consen  580 QLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRR  623 (767)
T ss_pred             HHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence            8888777766543 112233344455555555555555554443

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=97.38  E-value=0.0038  Score=58.53  Aligned_cols=65  Identities=8%  Similarity=0.081  Sum_probs=42.0

Q ss_pred             cCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHHHHHHHHHH
Q 037045           78 DRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQREAKKLFWEV  142 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~~~~l~~~~  142 (424)
                      +.+-++|||+++....  .+.+  .+-....++.+|++|.+.. +.+   +....+++.+++.++..+.+...
T Consensus       109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~  181 (329)
T PRK08058        109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE  181 (329)
T ss_pred             cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence            4556899999987643  2222  1112234556666665433 333   88889999999999998888653

>PRK04296 thymidine kinase; Provisional

Probab=97.38  E-value=0.00024  Score=60.98  Aligned_cols=112  Identities=13%  Similarity=0.061  Sum_probs=62.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhccccc---ccChhHHHHHHHHHhcc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAK---ELNNDLRADIISKELND   78 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~l~~~l~~   78 (424)
                      .++.|+|+.|.||||++..++.+..  .+...++.+.  ...+.......++.+++....   .....+....+.+ ..+
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~~--~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~   77 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNYE--ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE   77 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHH--HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence            3678899999999999999999884  3333444442  111212223344555543221   2223344444444 222


Q ss_pred             CcEEEEEcCCCCc--chhhhhccCCCCCCcEEEEEecchhhh
Q 037045           79 RSYVLFLDGVSSE--INFKEIGMHDDHGRGKVVFACRSREFC  118 (424)
Q Consensus        79 ~~~LlvlD~~~~~--~~~~~~~~~~~~~~~~iiittr~~~~~  118 (424)
                      +.-+||+|.++..  +++.++.-.....+..||+|.+..+..
T Consensus        78 ~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~  119 (190)
T PRK04296         78 KIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDFR  119 (190)
T ss_pred             CCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcccc
Confidence            3458999999764  223333111134577889998876653

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=97.38  E-value=0.0008  Score=62.80  Aligned_cols=56  Identities=16%  Similarity=0.109  Sum_probs=41.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccC---CC-CceEEEEEeccCCCHHHHHHHHHHHhcc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGES---RR-FDIIFWENINTDGNIRDIQEIILERLKV   58 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~---~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~   58 (424)
                      +++-|+|++|+|||+|+.+++-.....   .. -..++||+....+.++.+.+ +++.++.
T Consensus       127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~  186 (344)
T PLN03187        127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM  186 (344)
T ss_pred             eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence            467799999999999999997544211   11 24699999999888888765 4555544

>TIGR00763 lon ATP-dependent protease La

Probab=97.37  E-value=0.0029  Score=66.42  Aligned_cols=130  Identities=15%  Similarity=0.194  Sum_probs=69.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      ++.++|++|+|||++|+.+++..  ...|-.   ++++...+..++...     .........+.....+.+. ...+-+
T Consensus       349 ~lll~GppG~GKT~lAk~iA~~l--~~~~~~---i~~~~~~~~~~i~g~-----~~~~~g~~~g~i~~~l~~~-~~~~~v  417 (775)
T TIGR00763       349 ILCLVGPPGVGKTSLGKSIAKAL--NRKFVR---FSLGGVRDEAEIRGH-----RRTYVGAMPGRIIQGLKKA-KTKNPL  417 (775)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh--cCCeEE---EeCCCcccHHHHcCC-----CCceeCCCCchHHHHHHHh-CcCCCE
Confidence            68899999999999999999988  334322   233332232222110     0011111122222333322 223447


Q ss_pred             EEEcCCCCcch------hhhh----------ccCCC-------CCCcEEEEEecchhhhc----ccCceEEecCCCHHHH
Q 037045           83 LFLDGVSSEIN------FKEI----------GMHDD-------HGRGKVVFACRSREFCW----QADGVIHVQQLCQREA  135 (424)
Q Consensus        83 lvlD~~~~~~~------~~~~----------~~~~~-------~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~  135 (424)
                      ++||+++....      .+.+          .+.+.       .++.-+|.||.......    .....+++.+++.++-
T Consensus       418 illDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~  497 (775)
T TIGR00763       418 FLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEK  497 (775)
T ss_pred             EEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHH
Confidence            89999876521      0111          01111       12333444554433222    5556889999999998


Q ss_pred             HHHHHHHh
Q 037045          136 KKLFWEVV  143 (424)
Q Consensus       136 ~~l~~~~~  143 (424)
                      .+++.++.
T Consensus       498 ~~I~~~~l  505 (775)
T TIGR00763       498 LEIAKKYL  505 (775)
T ss_pred             HHHHHHHH
Confidence            88887654

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>cd01394 radB RadB

Probab=97.36  E-value=0.0013  Score=57.80  Aligned_cols=40  Identities=20%  Similarity=0.253  Sum_probs=31.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG   43 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~   43 (424)
                      +++.|+|++|+||||++.+++....  ..-..++|++.....
T Consensus        20 ~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~~   59 (218)
T cd01394          20 TVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGLS   59 (218)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCCC
Confidence            4788999999999999999998873  334568888765443

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=9.5e-06  Score=71.66  Aligned_cols=150  Identities=18%  Similarity=0.093  Sum_probs=96.9

Q ss_pred             ccceeEEEeeccCCCCC--CCCcCcccccEEEccC-CCCCCCCh-HHhcccCCCcEEEccCCCC-CcCC-hhhh-ccccc
Q 037045          262 DAHTKRLSLFGFPSSTL--PDMPNCCEILTLILEG-KRLEKLPT-SFFDYMCHLQLLDLHETNI-GCLP-PSIS-RLINL  334 (424)
Q Consensus       262 ~~~l~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~-~~l~~~~~-~~~~~~~~L~~L~l~~~~~-~~~p-~~~~-~l~~L  334 (424)
                      ++.|+.|++.|+++...  -.++.-.+|+.|++++ +.+++... -.+..++.|..|++++|.+ ...- -.+. --++|
T Consensus       209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l  288 (419)
T KOG2120|consen  209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL  288 (419)
T ss_pred             HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence            37888888888888862  3457778899999985 45664332 2356788899999998865 2211 1111 12557


Q ss_pred             ceeeeccccccc---ccCChhhhccCCCCEEEecCCc-Cc-ccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcCh
Q 037045          335 NALFLRSSCSLL---LQLPAEIGRLQKLEILDVSHTK-VQ-CLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISL  409 (424)
Q Consensus       335 ~~l~l~~~~~~~---~~lp~~~~~l~~L~~L~l~~~~-i~-~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~  409 (424)
                      ..||++ ++.+.   ..+..-..++++|.+||++.|- ++ ..-..+.+++-|+++.++.|-..           ....+
T Consensus       289 ~~LNls-G~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-----------~p~~~  356 (419)
T KOG2120|consen  289 TQLNLS-GYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-----------IPETL  356 (419)
T ss_pred             hhhhhh-hhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-----------ChHHe
Confidence            777873 22221   1223334578999999998874 66 44445778888999999988421           22344


Q ss_pred             hhhhccccCceeec
Q 037045          410 NIISKLRLLEELII  423 (424)
Q Consensus       410 ~~l~~l~~L~~L~l  423 (424)
                      -++...++|.+|++
T Consensus       357 ~~l~s~psl~yLdv  370 (419)
T KOG2120|consen  357 LELNSKPSLVYLDV  370 (419)
T ss_pred             eeeccCcceEEEEe
Confidence            56677777777765

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=97.36  E-value=0.00072  Score=60.66  Aligned_cols=87  Identities=18%  Similarity=0.276  Sum_probs=54.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCC-ceEEEEEeccC-CCHHHHHHHHHHHhccc--c-----cccChhH------
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRF-DIIFWENINTD-GNIRDIQEIILERLKVN--A-----KELNNDL------   67 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~-~~~~~~~~~i~~~l~~~--~-----~~~~~~~------   67 (424)
                      -++|.|.+|+|||||++++++...  .+| +.++++-++.. .+..++.+.+...=...  .     ...+...      
T Consensus        71 r~~If~~~G~GKTtLa~~i~~~i~--~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~  148 (274)
T cd01133          71 KIGLFGGAGVGKTVLIMELINNIA--KAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVAL  148 (274)
T ss_pred             EEEEecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence            478999999999999999999884  344 45677777664 45666776665432111  1     1111111      


Q ss_pred             HHHHHHHHh--c-cCcEEEEEcCCCCc
Q 037045           68 RADIISKEL--N-DRSYVLFLDGVSSE   91 (424)
Q Consensus        68 ~~~~l~~~l--~-~~~~LlvlD~~~~~   91 (424)
                      ..-.+.+.+  + ++++|+++|++-..
T Consensus       149 ~a~~~AEyfr~~~g~~Vl~~~Dsltr~  175 (274)
T cd01133         149 TGLTMAEYFRDEEGQDVLLFIDNIFRF  175 (274)
T ss_pred             HHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence            112334444  2 78999999998654

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=97.36  E-value=0.00098  Score=61.68  Aligned_cols=56  Identities=18%  Similarity=0.181  Sum_probs=40.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccC----CCCceEEEEEeccCCCHHHHHHHHHHHhcc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGES----RRFDIIFWENINTDGNIRDIQEIILERLKV   58 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~   58 (424)
                      +++-|+|++|+|||+|+.+++-.....    ..-..++|++....++++.+.+ +++.++.
T Consensus        97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~  156 (313)
T TIGR02238        97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV  156 (313)
T ss_pred             eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence            477899999999999999988644211    1124699999988888888764 4555543

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.0015  Score=65.05  Aligned_cols=132  Identities=14%  Similarity=0.143  Sum_probs=76.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      ++++++||+|+|||+|++.+++..  ...|   +-+.++.-.+-..+.-+     ..+....=.+..+.-+ +..+.++=
T Consensus       351 pILcLVGPPGVGKTSLgkSIA~al--~Rkf---vR~sLGGvrDEAEIRGH-----RRTYIGamPGrIiQ~m-kka~~~NP  419 (782)
T COG0466         351 PILCLVGPPGVGKTSLGKSIAKAL--GRKF---VRISLGGVRDEAEIRGH-----RRTYIGAMPGKIIQGM-KKAGVKNP  419 (782)
T ss_pred             cEEEEECCCCCCchhHHHHHHHHh--CCCE---EEEecCccccHHHhccc-----cccccccCChHHHHHH-HHhCCcCC
Confidence            489999999999999999999988  5555   33455555443332211     0111111111122222 22345677


Q ss_pred             EEEEcCCCCcch----------hhhh------ccC------CCCCCcEEEEEecchhh-hc----ccCceEEecCCCHHH
Q 037045           82 VLFLDGVSSEIN----------FKEI------GMH------DDHGRGKVVFACRSREF-CW----QADGVIHVQQLCQRE  134 (424)
Q Consensus        82 LlvlD~~~~~~~----------~~~~------~~~------~~~~~~~iiittr~~~~-~~----~~~~~~~l~~l~~~~  134 (424)
                      |++||.++.+..          ++-+      .|.      +..-...+.|+|-+..- .+    ....++++.+.+++|
T Consensus       420 v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~E  499 (782)
T COG0466         420 VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDE  499 (782)
T ss_pred             eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHH
Confidence            999999986411          1111      111      11112234455554333 22    777899999999999


Q ss_pred             HHHHHHHHhc
Q 037045          135 AKKLFWEVVG  144 (424)
Q Consensus       135 ~~~l~~~~~~  144 (424)
                      -.++-+++..
T Consensus       500 Kl~IAk~~Li  509 (782)
T COG0466         500 KLEIAKRHLI  509 (782)
T ss_pred             HHHHHHHhcc
Confidence            8888877763

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.35  E-value=0.0049  Score=55.80  Aligned_cols=42  Identities=24%  Similarity=0.378  Sum_probs=29.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQ   49 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~   49 (424)
                      -|.|.|++|+|||++|+.+++..  ..   ..+.+++....+..+++
T Consensus        23 ~vLL~G~~GtGKT~lA~~la~~l--g~---~~~~i~~~~~~~~~dll   64 (262)
T TIGR02640        23 PVHLRGPAGTGKTTLAMHVARKR--DR---PVMLINGDAELTTSDLV   64 (262)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHh--CC---CEEEEeCCccCCHHHHh
Confidence            46789999999999999999855  22   23455555554444443

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=97.34  E-value=0.0017  Score=58.58  Aligned_cols=87  Identities=16%  Similarity=0.182  Sum_probs=56.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc--cccChhHHHHHHHHHhc--
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA--KELNNDLRADIISKELN--   77 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~~~l~--   77 (424)
                      +++=|+|+.|+||||+|.+++-..  ...-..++|++.-..++++.+..-....+..-.  ...+.++....+....+  
T Consensus        61 ~ItEiyG~~gsGKT~lal~~~~~a--q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~  138 (279)
T COG0468          61 RITEIYGPESSGKTTLALQLVANA--QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSG  138 (279)
T ss_pred             eEEEEecCCCcchhhHHHHHHHHh--hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHhc
Confidence            578899999999999999999888  444558999999988888876543333222111  33333333433333332  


Q ss_pred             -cCcEEEEEcCCCC
Q 037045           78 -DRSYVLFLDGVSS   90 (424)
Q Consensus        78 -~~~~LlvlD~~~~   90 (424)
                       .+--|+|+|.+-.
T Consensus       139 ~~~i~LvVVDSvaa  152 (279)
T COG0468         139 AEKIDLLVVDSVAA  152 (279)
T ss_pred             cCCCCEEEEecCcc
Confidence             2234889998643

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.31  E-value=0.0043  Score=65.78  Aligned_cols=128  Identities=14%  Similarity=0.150  Sum_probs=69.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCC----Cce-EEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRR----FDI-IFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN   77 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~   77 (424)
                      -+.++|++|+|||++|+.++++......    ... ++.++++.      +.    .   ........+.....+.+.+.
T Consensus       196 n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~------l~----a---~~~~~g~~e~~l~~~l~~~~  262 (852)
T TIGR03346       196 NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA------LI----A---GAKYRGEFEERLKAVLNEVT  262 (852)
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH------Hh----h---cchhhhhHHHHHHHHHHHHH
Confidence            3568999999999999999998732111    122 33333211      10    0   00000111222222222222


Q ss_pred             --cCcEEEEEcCCCCcc---------hhhhhccCCCCCCc-EEEEEecchhh---h---c---ccCceEEecCCCHHHHH
Q 037045           78 --DRSYVLFLDGVSSEI---------NFKEIGMHDDHGRG-KVVFACRSREF---C---W---QADGVIHVQQLCQREAK  136 (424)
Q Consensus        78 --~~~~LlvlD~~~~~~---------~~~~~~~~~~~~~~-~iiittr~~~~---~---~---~~~~~~~l~~l~~~~~~  136 (424)
                        +++++|+||+++...         +...+..|....|. .+|-+|....+   .   .   .....+.++..+.++..
T Consensus       263 ~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~  342 (852)
T TIGR03346       263 KSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTI  342 (852)
T ss_pred             hcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHH
Confidence              358999999988542         12233223222333 55555554433   1   1   55667889999999999


Q ss_pred             HHHHHHh
Q 037045          137 KLFWEVV  143 (424)
Q Consensus       137 ~l~~~~~  143 (424)
                      +++....
T Consensus       343 ~iL~~~~  349 (852)
T TIGR03346       343 SILRGLK  349 (852)
T ss_pred             HHHHHHH
Confidence            9987654

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=97.30  E-value=0.012  Score=54.54  Aligned_cols=164  Identities=12%  Similarity=0.154  Sum_probs=87.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccC--------------CCCceEEEEEeccCCCHHHHHHHHHHHhcccc---cccCh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGES--------------RRFDIIFWENINTDGNIRDIQEIILERLKVNA---KELNN   65 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~--------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~   65 (424)
                      ...++|+.|+||+++|..+++..--.              .|.| ..|+.-....+-...-..-+...+...   .....
T Consensus        28 a~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~i  106 (314)
T PRK07399         28 AYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRL  106 (314)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccccccccchhhhhhccccccccccCcH
Confidence            56789999999999999998875311              1122 334331100000000011111111000   11112


Q ss_pred             hHHHHHHHHHhc-----cCcEEEEEcCCCCcch--hhhh-ccCCCCCCcEEE-EEecchhhhc---ccCceEEecCCCHH
Q 037045           66 DLRADIISKELN-----DRSYVLFLDGVSSEIN--FKEI-GMHDDHGRGKVV-FACRSREFCW---QADGVIHVQQLCQR  133 (424)
Q Consensus        66 ~~~~~~l~~~l~-----~~~~LlvlD~~~~~~~--~~~~-~~~~~~~~~~ii-ittr~~~~~~---~~~~~~~l~~l~~~  133 (424)
                      ++ +..+.+.+.     +.+-++|+|+++.+..  .+.+ .....-+.+.+| +|++...+.+   +....+.+.+++++
T Consensus       107 d~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~  185 (314)
T PRK07399        107 EQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDE  185 (314)
T ss_pred             HH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHH
Confidence            22 223333332     4567999999987643  2222 111111134444 4444444444   88899999999999


Q ss_pred             HHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHH
Q 037045          134 EAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKL  173 (424)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~  173 (424)
                      +..+.+.+......     .+.....++..++|.|.....
T Consensus       186 ~~~~~L~~~~~~~~-----~~~~~~~l~~~a~Gs~~~al~  220 (314)
T PRK07399        186 QLEQVLKRLGDEEI-----LNINFPELLALAQGSPGAAIA  220 (314)
T ss_pred             HHHHHHHHhhcccc-----chhHHHHHHHHcCCCHHHHHH
Confidence            99999988753221     011235788999999965443

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.30  E-value=0.00057  Score=57.93  Aligned_cols=35  Identities=29%  Similarity=0.413  Sum_probs=28.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN   38 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~   38 (424)
                      .+|.+.|++|+||||+|+.++...  ...+..+++++
T Consensus         8 ~~I~i~G~~GsGKst~a~~l~~~l--~~~~~~~~~~~   42 (176)
T PRK05541          8 YVIWITGLAGSGKTTIAKALYERL--KLKYSNVIYLD   42 (176)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH--HHcCCcEEEEe
Confidence            378999999999999999999988  44555555653

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.26  E-value=0.0046  Score=65.42  Aligned_cols=128  Identities=15%  Similarity=0.122  Sum_probs=69.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCC----Cc-eEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRR----FD-IIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-   76 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-   76 (424)
                      -+.++|++|+|||++|+.+++......-    .+ .+++++++.-......            . ...+...+.+.+.+ 
T Consensus       201 n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~------------~-g~~e~~lk~~~~~~~  267 (857)
T PRK10865        201 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKY------------R-GEFEERLKGVLNDLA  267 (857)
T ss_pred             ceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccch------------h-hhhHHHHHHHHHHHH
Confidence            3679999999999999999998732111    12 2344443321100000            0 01111122221211 


Q ss_pred             -ccCcEEEEEcCCCCcc---------hhhhhccCCCCCCc-EEEEEecchhhh------c---ccCceEEecCCCHHHHH
Q 037045           77 -NDRSYVLFLDGVSSEI---------NFKEIGMHDDHGRG-KVVFACRSREFC------W---QADGVIHVQQLCQREAK  136 (424)
Q Consensus        77 -~~~~~LlvlD~~~~~~---------~~~~~~~~~~~~~~-~iiittr~~~~~------~---~~~~~~~l~~l~~~~~~  136 (424)
                       .+.+++|++|+++...         +...+..|.-..|. ++|-+|....+.      .   .....+.+..-+.+++.
T Consensus       268 ~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~  347 (857)
T PRK10865        268 KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTI  347 (857)
T ss_pred             HcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHH
Confidence             2468999999987652         22333233223333 555555544431      1   44456777877999999


Q ss_pred             HHHHHHh
Q 037045          137 KLFWEVV  143 (424)
Q Consensus       137 ~l~~~~~  143 (424)
                      ++++...
T Consensus       348 ~iL~~l~  354 (857)
T PRK10865        348 AILRGLK  354 (857)
T ss_pred             HHHHHHh
Confidence            9886554

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.0065  Score=58.37  Aligned_cols=118  Identities=19%  Similarity=0.260  Sum_probs=69.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc----c
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN----D   78 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~   78 (424)
                      -+.++|++|+|||+||.+++...    .|..+--++      +++.            ...++.....++.+.+.    .
T Consensus       540 SvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiS------pe~m------------iG~sEsaKc~~i~k~F~DAYkS  597 (744)
T KOG0741|consen  540 SVLLEGPPGSGKTALAAKIALSS----DFPFVKIIS------PEDM------------IGLSESAKCAHIKKIFEDAYKS  597 (744)
T ss_pred             EEEEecCCCCChHHHHHHHHhhc----CCCeEEEeC------hHHc------------cCccHHHHHHHHHHHHHHhhcC
Confidence            46789999999999999999855    454332222      1111            12222333444444443    4


Q ss_pred             CcEEEEEcCCCCcchhhhhc-----------------cCCCCCCcEEEEEecchhhhc------ccCceEEecCCCH-HH
Q 037045           79 RSYVLFLDGVSSEINFKEIG-----------------MHDDHGRGKVVFACRSREFCW------QADGVIHVQQLCQ-RE  134 (424)
Q Consensus        79 ~~~LlvlD~~~~~~~~~~~~-----------------~~~~~~~~~iiittr~~~~~~------~~~~~~~l~~l~~-~~  134 (424)
                      .--.+|+||++...+|-.++                 -|+.+++--|+-||..+.+..      -....+.++.++. ++
T Consensus       598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~  677 (744)
T KOG0741|consen  598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQ  677 (744)
T ss_pred             cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHH
Confidence            45689999998875544331                 123333334445666666655      4456777887776 66


Q ss_pred             HHHHHHHH
Q 037045          135 AKKLFWEV  142 (424)
Q Consensus       135 ~~~l~~~~  142 (424)
                      ..+.+...
T Consensus       678 ~~~vl~~~  685 (744)
T KOG0741|consen  678 LLEVLEEL  685 (744)
T ss_pred             HHHHHHHc
Confidence            66666544

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.0046  Score=60.98  Aligned_cols=143  Identities=14%  Similarity=0.217  Sum_probs=78.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +=|.++||+|+|||++|+.+++..  .-.|     +.+..+        +++...-    ..++....+.+++.-+-..+
T Consensus       469 kGVLlyGPPGC~KT~lAkalAne~--~~nF-----lsvkgp--------EL~sk~v----GeSEr~ir~iF~kAR~~aP~  529 (693)
T KOG0730|consen  469 KGVLLYGPPGCGKTLLAKALANEA--GMNF-----LSVKGP--------ELFSKYV----GESERAIREVFRKARQVAPC  529 (693)
T ss_pred             ceEEEECCCCcchHHHHHHHhhhh--cCCe-----eeccCH--------HHHHHhc----CchHHHHHHHHHHHhhcCCe
Confidence            447899999999999999999988  4444     222222        1111111    11122222222222234579


Q ss_pred             EEEEcCCCCcc-------------hhh----hh-ccCCCCCCcEEEE--Eecchhhhc------ccCceEEecCCCHHHH
Q 037045           82 VLFLDGVSSEI-------------NFK----EI-GMHDDHGRGKVVF--ACRSREFCW------QADGVIHVQQLCQREA  135 (424)
Q Consensus        82 LlvlD~~~~~~-------------~~~----~~-~~~~~~~~~~iii--ttr~~~~~~------~~~~~~~l~~l~~~~~  135 (424)
                      ++.||.++...             .+.    ++ ++  ...+.-+||  |.|...+-.      ..+..+.++.=+.+..
T Consensus       530 IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~--e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR  607 (693)
T KOG0730|consen  530 IIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGL--EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEAR  607 (693)
T ss_pred             EEehhhHHhHhhccCCCccchHHHHHHHHHHHcccc--cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHH
Confidence            99999987531             122    22 11  111233333  444333332      5677888887777888


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      .++|+.++.+......   -...+|++...|+-
T Consensus       608 ~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~S  637 (693)
T KOG0730|consen  608 LEILKQCAKKMPFSED---VDLEELAQATEGYS  637 (693)
T ss_pred             HHHHHHHHhcCCCCcc---ccHHHHHHHhccCC
Confidence            8999998876522221   23455666666654

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.21  E-value=0.00078  Score=57.01  Aligned_cols=71  Identities=21%  Similarity=0.371  Sum_probs=41.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL   83 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll   83 (424)
                      +.|+|+.|+|||.||..+++....  +--.+.|+.      ..+++..+    ...........   .+ +.+. +-=||
T Consensus        50 l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~~------~~~L~~~l----~~~~~~~~~~~---~~-~~l~-~~dlL  112 (178)
T PF01695_consen   50 LILYGPPGTGKTHLAVAIANEAIR--KGYSVLFIT------ASDLLDEL----KQSRSDGSYEE---LL-KRLK-RVDLL  112 (178)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEE------HHHHHHHH----HCCHCCTTHCH---HH-HHHH-TSSCE
T ss_pred             EEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEee------cCceeccc----cccccccchhh---hc-Cccc-cccEe
Confidence            789999999999999999988742  223356654      33444444    32221111122   22 2222 23478


Q ss_pred             EEcCCCCc
Q 037045           84 FLDGVSSE   91 (424)
Q Consensus        84 vlD~~~~~   91 (424)
                      ||||+...
T Consensus       113 ilDDlG~~  120 (178)
T PF01695_consen  113 ILDDLGYE  120 (178)
T ss_dssp             EEETCTSS
T ss_pred             ccccccee
Confidence            89998654

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.21  E-value=0.002  Score=60.71  Aligned_cols=88  Identities=17%  Similarity=0.131  Sum_probs=52.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcccc-cccChhHHHHHHHHHhccC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNA-KELNNDLRADIISKELNDR   79 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~~   79 (424)
                      ++++++|+.|+||||++.+++.....+.....+..+..... ....+-++...+.++.+. ...+..+....+ ..+.++
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~~l~~~  216 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-AELRNK  216 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-HHhcCC
Confidence            47899999999999999999988632222245666665443 234445555566666554 222223333333 334444


Q ss_pred             cEEEEEcCCCCc
Q 037045           80 SYVLFLDGVSSE   91 (424)
Q Consensus        80 ~~LlvlD~~~~~   91 (424)
                       -+++||.....
T Consensus       217 -DlVLIDTaG~~  227 (374)
T PRK14722        217 -HMVLIDTIGMS  227 (374)
T ss_pred             -CEEEEcCCCCC
Confidence             45669987543

>PRK06217 hypothetical protein; Validated

Probab=97.20  E-value=0.0017  Score=55.35  Aligned_cols=36  Identities=33%  Similarity=0.499  Sum_probs=27.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccCCCC--ceEEEE
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGESRRF--DIIFWE   37 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv   37 (424)
                      |..|+|.|.+|+||||+|+++.+.... .++  |.++|.
T Consensus         1 ~~~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~   38 (183)
T PRK06217          1 MMRIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWL   38 (183)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeec
Confidence            456999999999999999999998742 233  446664

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=97.19  E-value=0.0018  Score=59.54  Aligned_cols=83  Identities=17%  Similarity=0.171  Sum_probs=53.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      +++-|+|+.|+||||||.+++....  ..-..++|++.....++..     ++.++.+.      .+...++....+.+.
T Consensus        54 ~ivEi~G~~ssGKttLaL~~ia~~q--~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~l  126 (322)
T PF00154_consen   54 RIVEIYGPESSGKTTLALHAIAEAQ--KQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQL  126 (322)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH--HTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHHH
T ss_pred             ceEEEeCCCCCchhhhHHHHHHhhh--cccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHHH
Confidence            5889999999999999999998873  3345589999887766543     33344332      344556666777776


Q ss_pred             hccCc-EEEEEcCCCCc
Q 037045           76 LNDRS-YVLFLDGVSSE   91 (424)
Q Consensus        76 l~~~~-~LlvlD~~~~~   91 (424)
                      ++... -++|+|-+-..
T Consensus       127 irsg~~~lVVvDSv~al  143 (322)
T PF00154_consen  127 IRSGAVDLVVVDSVAAL  143 (322)
T ss_dssp             HHTTSESEEEEE-CTT-
T ss_pred             hhcccccEEEEecCccc
Confidence            66654 38899987554

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.19  E-value=0.00094  Score=57.72  Aligned_cols=110  Identities=11%  Similarity=0.089  Sum_probs=59.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      ++|.|.|+.|+||||+++.++....  ......++..-... .  .........+.......+.......++..++...=
T Consensus         2 GlilI~GptGSGKTTll~~ll~~~~--~~~~~~i~t~e~~~-E--~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd   76 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDYIN--KNKTHHILTIEDPI-E--FVHESKRSLINQREVGLDTLSFENALKAALRQDPD   76 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhh--hcCCcEEEEEcCCc-c--ccccCccceeeecccCCCccCHHHHHHHHhcCCcC
Confidence            4789999999999999999888773  33333333221111 1  00000000011111111223345566677777777


Q ss_pred             EEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhh
Q 037045           82 VLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREF  117 (424)
Q Consensus        82 LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~  117 (424)
                      ++++|++.+.+.+... +.....|..++.|+.....
T Consensus        77 ~ii~gEird~e~~~~~-l~~a~~G~~v~~t~Ha~~~  111 (198)
T cd01131          77 VILVGEMRDLETIRLA-LTAAETGHLVMSTLHTNSA  111 (198)
T ss_pred             EEEEcCCCCHHHHHHH-HHHHHcCCEEEEEecCCcH
Confidence            9999999877655443 1112345556666665544

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.0061  Score=60.75  Aligned_cols=145  Identities=14%  Similarity=0.129  Sum_probs=80.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +.+.++|++|+|||.||+.++...  ..+|-.+..-.+..             ..    -..........+....+...+
T Consensus       277 ~giLl~GpPGtGKT~lAkava~~~--~~~fi~v~~~~l~s-------------k~----vGesek~ir~~F~~A~~~~p~  337 (494)
T COG0464         277 KGVLLYGPPGTGKTLLAKAVALES--RSRFISVKGSELLS-------------KW----VGESEKNIRELFEKARKLAPS  337 (494)
T ss_pred             CeeEEECCCCCCHHHHHHHHHhhC--CCeEEEeeCHHHhc-------------cc----cchHHHHHHHHHHHHHcCCCc
Confidence            368899999999999999999976  45554332211100             00    011111122222333346789


Q ss_pred             EEEEcCCCCcc-------------hhhhhccC----CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHHH
Q 037045           82 VLFLDGVSSEI-------------NFKEIGMH----DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAKK  137 (424)
Q Consensus        82 LlvlD~~~~~~-------------~~~~~~~~----~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~~  137 (424)
                      +|.+|+++...             ...++...    ....+..+|-+|.......       .-+..+.+..-+.++..+
T Consensus       338 iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~  417 (494)
T COG0464         338 IIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLE  417 (494)
T ss_pred             EEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHH
Confidence            99999987631             12222111    2222333444444433333       446688888999999999


Q ss_pred             HHHHHhcccCCCCccHHHHHHHHHHhcCC
Q 037045          138 LFWEVVGVHLKKYPDIELVADSIVKECGG  166 (424)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~I~~~~~g  166 (424)
                      .|+.+....... ...+-..+.+++...|
T Consensus       418 i~~~~~~~~~~~-~~~~~~~~~l~~~t~~  445 (494)
T COG0464         418 IFKIHLRDKKPP-LAEDVDLEELAEITEG  445 (494)
T ss_pred             HHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence            999988754211 1122234455555554

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.17  E-value=0.0029  Score=65.44  Aligned_cols=128  Identities=20%  Similarity=0.244  Sum_probs=69.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCC---C-CceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-cc
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESR---R-FDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-ND   78 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~---~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~   78 (424)
                      +.++|++|+|||++|+.+++......   . .+..+|..     ++..+    .   ....-....+...+.+.+.+ +.
T Consensus       210 ~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----l---aG~~~~Ge~e~rl~~l~~~l~~~  277 (758)
T PRK11034        210 PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----L---AGTKYRGDFEKRFKALLKQLEQD  277 (758)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----h---cccchhhhHHHHHHHHHHHHHhc
Confidence            56899999999999999998753211   1 13344421     11111    1   11110111222223232333 24


Q ss_pred             CcEEEEEcCCCCc----------chhhhhccCC-CCCCcEEEEEecchhhh------c---ccCceEEecCCCHHHHHHH
Q 037045           79 RSYVLFLDGVSSE----------INFKEIGMHD-DHGRGKVVFACRSREFC------W---QADGVIHVQQLCQREAKKL  138 (424)
Q Consensus        79 ~~~LlvlD~~~~~----------~~~~~~~~~~-~~~~~~iiittr~~~~~------~---~~~~~~~l~~l~~~~~~~l  138 (424)
                      .+.+|+||+++..          .+...+..|. ....-++|-+|....+.      +   .....+++++.+.+++.++
T Consensus       278 ~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~I  357 (758)
T PRK11034        278 TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQI  357 (758)
T ss_pred             CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHH
Confidence            5789999998753          1222221221 22233555555543321      1   5557899999999999999


Q ss_pred             HHHHh
Q 037045          139 FWEVV  143 (424)
Q Consensus       139 ~~~~~  143 (424)
                      +....
T Consensus       358 L~~~~  362 (758)
T PRK11034        358 INGLK  362 (758)
T ss_pred             HHHHH
Confidence            98654

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=97.16  E-value=0.0018  Score=60.05  Aligned_cols=55  Identities=16%  Similarity=0.125  Sum_probs=38.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccC---C-CCceEEEEEeccCCCHHHHHHHHHHHhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGES---R-RFDIIFWENINTDGNIRDIQEIILERLK   57 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~   57 (424)
                      .++.|+|++|+|||+|+.+++......   . .-..++|++....++.+.+ .++++.++
T Consensus        97 ~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~  155 (316)
T TIGR02239        97 SITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG  155 (316)
T ss_pred             eEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence            478899999999999999998643211   1 1235799998887777764 33444443

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=97.16  E-value=0.0025  Score=59.49  Aligned_cols=55  Identities=18%  Similarity=0.218  Sum_probs=40.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCC----CceEEEEEeccCCCHHHHHHHHHHHhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRR----FDIIFWENINTDGNIRDIQEIILERLK   57 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~   57 (424)
                      +++-|+|++|+|||+++.+++........    -..++|++....++++.+.+. ++.++
T Consensus       103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g  161 (317)
T PRK04301        103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALG  161 (317)
T ss_pred             cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcC
Confidence            47789999999999999999987532211    147999999888787776543 34443

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.15  E-value=0.0024  Score=60.09  Aligned_cols=87  Identities=11%  Similarity=0.179  Sum_probs=49.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-CHHHHHHHHHHHhcccc-cccChhHHHHHHHHHhccC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-NIRDIQEIILERLKVNA-KELNNDLRADIISKELNDR   79 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~~   79 (424)
                      ++|+|+|++|+||||++.+++....  ..-..+..++..... ...+-++.....++.+. ...+.......+...-...
T Consensus       242 ~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~  319 (436)
T PRK11889        242 QTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  319 (436)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence            5899999999999999999998774  222245566655442 12222333334444433 2334444444443322222


Q ss_pred             -cEEEEEcCCCC
Q 037045           80 -SYVLFLDGVSS   90 (424)
Q Consensus        80 -~~LlvlD~~~~   90 (424)
                       .=++++|-...
T Consensus       320 ~~DvVLIDTaGR  331 (436)
T PRK11889        320 RVDYILIDTAGK  331 (436)
T ss_pred             CCCEEEEeCccc
Confidence             23778887654

>PTZ00035 Rad51 protein; Provisional

Probab=97.15  E-value=0.0027  Score=59.47  Aligned_cols=55  Identities=16%  Similarity=0.158  Sum_probs=38.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhcc---C-CCCceEEEEEeccCCCHHHHHHHHHHHhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGE---S-RRFDIIFWENINTDGNIRDIQEIILERLK   57 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~---~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~   57 (424)
                      +++.|+|++|+|||+|+..++-....   . ..-..++|++....++++.+. ++++.++
T Consensus       119 ~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~-~ia~~~g  177 (337)
T PTZ00035        119 SITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIV-QIAERFG  177 (337)
T ss_pred             eEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHH-HHHHHhC
Confidence            47889999999999999999865531   1 122457899987777777643 3445444

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.13  E-value=0.0016  Score=60.64  Aligned_cols=35  Identities=17%  Similarity=0.346  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEe
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENI   39 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~   39 (424)
                      -+.++|+.|+|||.||..+++...  ..-..++|+++
T Consensus       185 ~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~  219 (329)
T PRK06835        185 NLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTA  219 (329)
T ss_pred             cEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEH
Confidence            478999999999999999999884  22234666553

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.11  E-value=0.00063  Score=57.11  Aligned_cols=42  Identities=19%  Similarity=0.237  Sum_probs=34.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN   44 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~   44 (424)
                      ..+.+.|+.|+|||.+|+.+++.... ......+-++++....
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~   45 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE   45 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence            57889999999999999999999931 5666778888888766

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.10  E-value=0.011  Score=62.70  Aligned_cols=82  Identities=17%  Similarity=0.218  Sum_probs=45.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccC-cE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDR-SY   81 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~   81 (424)
                      ++.++|+.|+|||++|+.+++...  ......+.++++......    .+..-++.+......++ ...+.+..+.+ .-
T Consensus       600 ~~Lf~Gp~G~GKT~lA~aLa~~l~--~~~~~~i~id~se~~~~~----~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~  672 (857)
T PRK10865        600 SFLFLGPTGVGKTELCKALANFMF--DSDDAMVRIDMSEFMEKH----SVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYS  672 (857)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhh--cCCCcEEEEEhHHhhhhh----hHHHHhCCCCcccccch-hHHHHHHHHhCCCC
Confidence            578999999999999999998762  222334556655432211    11122332221111111 11233333333 35


Q ss_pred             EEEEcCCCCc
Q 037045           82 VLFLDGVSSE   91 (424)
Q Consensus        82 LlvlD~~~~~   91 (424)
                      +|+||+++..
T Consensus       673 vLllDEieka  682 (857)
T PRK10865        673 VILLDEVEKA  682 (857)
T ss_pred             eEEEeehhhC
Confidence            9999999864

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=97.10  E-value=0.016  Score=54.30  Aligned_cols=86  Identities=10%  Similarity=0.070  Sum_probs=54.7

Q ss_pred             cCcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEEEEecc-hhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045           78 DRSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVVFACRS-REFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKK  149 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~iiittr~-~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~  149 (424)
                      +++-++|||+++.+..  -..+ . +-.-..++.+|++|.+ ..+.+   +....+.+.+++.+++.+.+....+.    
T Consensus       107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~----  182 (334)
T PRK07993        107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVTM----  182 (334)
T ss_pred             CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccCC----
Confidence            4566999999998743  2222 1 1122334555555554 44444   66788999999999998887654221    


Q ss_pred             CccHHHHHHHHHHhcCCchHH
Q 037045          150 YPDIELVADSIVKECGGMPYM  170 (424)
Q Consensus       150 ~~~~~~~~~~I~~~~~g~Pla  170 (424)
                         .++.+..+++.++|.|..
T Consensus       183 ---~~~~a~~~~~la~G~~~~  200 (334)
T PRK07993        183 ---SQDALLAALRLSAGAPGA  200 (334)
T ss_pred             ---CHHHHHHHHHHcCCCHHH
Confidence               133467789999999953

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.09  E-value=0.00028  Score=63.93  Aligned_cols=133  Identities=15%  Similarity=0.129  Sum_probs=95.2

Q ss_pred             cCcccccEEEccCCCCCCC-C---hHHhcccCCCcEEEccCCCCCcCC--------------hhhhcccccceeeecccc
Q 037045          282 PNCCEILTLILEGKRLEKL-P---TSFFDYMCHLQLLDLHETNIGCLP--------------PSISRLINLNALFLRSSC  343 (424)
Q Consensus       282 ~~~~~L~~L~l~~~~l~~~-~---~~~~~~~~~L~~L~l~~~~~~~~p--------------~~~~~l~~L~~l~l~~~~  343 (424)
                      ..|+.|+.|+||.|.+..- +   ...++.+..|+.|.+.+|.++...              .....-+.|+.+.+  .+
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~--~r  166 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC--GR  166 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe--ec
Confidence            6677999999999999832 2   233566889999999999874332              12345678999998  88


Q ss_pred             cccccCC-----hhhhccCCCCEEEecCCcCcc-----cchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhh
Q 037045          344 SLLLQLP-----AEIGRLQKLEILDVSHTKVQC-----LPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIIS  413 (424)
Q Consensus       344 ~~~~~lp-----~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~  413 (424)
                      |++..-+     ..+...+.|..+.+..|+|..     +-..+..+++|+.|++++|.++.        -+....-+.++
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~--------egs~~LakaL~  238 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL--------EGSVALAKALS  238 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh--------HHHHHHHHHhc
Confidence            8887654     345667899999999988662     22346899999999999997631        12334455667


Q ss_pred             ccccCceeecC
Q 037045          414 KLRLLEELIIE  424 (424)
Q Consensus       414 ~l~~L~~L~l~  424 (424)
                      .+++|+.|+++
T Consensus       239 s~~~L~El~l~  249 (382)
T KOG1909|consen  239 SWPHLRELNLG  249 (382)
T ss_pred             ccchheeeccc
Confidence            77777777653

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.09  E-value=0.003  Score=57.81  Aligned_cols=85  Identities=19%  Similarity=0.177  Sum_probs=47.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC-HHHHHHHHHHHhcccc-cccChhHHHHHHHHHhccC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN-IRDIQEIILERLKVNA-KELNNDLRADIISKELNDR   79 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~~   79 (424)
                      ++++|+|+.|+||||++.+++.....+..-..+..++...+.. ....+......++.+. ...+..+....+. .+.+ 
T Consensus       195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~-~~~~-  272 (282)
T TIGR03499       195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALD-RLRD-  272 (282)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHH-HccC-
Confidence            4899999999999999999998874221123466677655321 2223333334344333 2223333333333 2333 


Q ss_pred             cEEEEEcCC
Q 037045           80 SYVLFLDGV   88 (424)
Q Consensus        80 ~~LlvlD~~   88 (424)
                      .=++++|..
T Consensus       273 ~d~vliDt~  281 (282)
T TIGR03499       273 KDLILIDTA  281 (282)
T ss_pred             CCEEEEeCC
Confidence            347777753

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.08  E-value=0.0026  Score=53.71  Aligned_cols=87  Identities=18%  Similarity=0.153  Sum_probs=46.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-CHHHHHHHHHHHhcccc----cccChhHHH-HHHHHHh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-NIRDIQEIILERLKVNA----KELNNDLRA-DIISKEL   76 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~----~~~~~~~~~-~~l~~~l   76 (424)
                      ++.+.|++|+||||++..++....  ..-..++.++..... ...+.+.......+...    ...+..+.. +.+....
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~--~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLK--KKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR   79 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999998874  222345556654432 22333333344444322    112222222 2233323


Q ss_pred             ccCcEEEEEcCCCCc
Q 037045           77 NDRSYVLFLDGVSSE   91 (424)
Q Consensus        77 ~~~~~LlvlD~~~~~   91 (424)
                      .+..-++|+|-....
T Consensus        80 ~~~~d~viiDt~g~~   94 (173)
T cd03115          80 EENFDVVIVDTAGRL   94 (173)
T ss_pred             hCCCCEEEEECcccc
Confidence            333336668876553

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR00602 rad24 checkpoint protein rad24

Probab=97.08  E-value=0.0059  Score=61.72  Aligned_cols=51  Identities=16%  Similarity=0.160  Sum_probs=33.2

Q ss_pred             cCceEEecCCCHHHHHHHHHHHhcccCCC--C---ccHHHHHHHHHHhcCCchHHH
Q 037045          121 ADGVIHVQQLCQREAKKLFWEVVGVHLKK--Y---PDIELVADSIVKECGGMPYML  171 (424)
Q Consensus       121 ~~~~~~l~~l~~~~~~~l~~~~~~~~~~~--~---~~~~~~~~~I~~~~~g~Plai  171 (424)
                      ....+.+.++...+-.+.+.+.+......  .   ....+....|+..+.|.-...
T Consensus       265 rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiRsA  320 (637)
T TIGR00602       265 RVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIRSA  320 (637)
T ss_pred             ceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHHHH
Confidence            44568999999999888887777543110  1   112456677888888866433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.08  E-value=0.0019  Score=64.27  Aligned_cols=71  Identities=21%  Similarity=0.359  Sum_probs=55.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh--ccC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL--NDR   79 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l--~~~   79 (424)
                      +|..++|++|.||||||+-++++.    .| .++-|+.+...+...+-+.|...+....              .+  .++
T Consensus       327 KilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s--------------~l~adsr  387 (877)
T KOG1969|consen  327 KILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHS--------------VLDADSR  387 (877)
T ss_pred             ceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcc--------------ccccCCC
Confidence            578999999999999999999976    23 3678888888888888888877665432              22  256


Q ss_pred             cEEEEEcCCCCc
Q 037045           80 SYVLFLDGVSSE   91 (424)
Q Consensus        80 ~~LlvlD~~~~~   91 (424)
                      +.-||+|.++..
T Consensus       388 P~CLViDEIDGa  399 (877)
T KOG1969|consen  388 PVCLVIDEIDGA  399 (877)
T ss_pred             cceEEEecccCC
Confidence            777889998865

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=97.07  E-value=0.044  Score=50.77  Aligned_cols=151  Identities=7%  Similarity=-0.024  Sum_probs=81.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc---------cccChhHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA---------KELNNDLRADIIS   73 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~~~~~l~   73 (424)
                      .+.++|+.|+||+++|..+++..-=...-+.    .++..    ...+.+...--...         .....++.. .+.
T Consensus        27 A~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~----~Cg~C----~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR-~l~   97 (319)
T PRK06090         27 ALLLQSDEGLGVESLVELFSRALLCQNYQSE----ACGFC----HSCELMQSGNHPDLHVIKPEKEGKSITVEQIR-QCN   97 (319)
T ss_pred             eEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCC----HHHHHHHcCCCCCEEEEecCcCCCcCCHHHHH-HHH
Confidence            4678999999999999999887631110000    01111    11111111100000         011122221 222


Q ss_pred             HHh-----ccCcEEEEEcCCCCcch--hhhh-cc-CCCCCCcEEEEE-ecchhhhc---ccCceEEecCCCHHHHHHHHH
Q 037045           74 KEL-----NDRSYVLFLDGVSSEIN--FKEI-GM-HDDHGRGKVVFA-CRSREFCW---QADGVIHVQQLCQREAKKLFW  140 (424)
Q Consensus        74 ~~l-----~~~~~LlvlD~~~~~~~--~~~~-~~-~~~~~~~~iiit-tr~~~~~~---~~~~~~~l~~l~~~~~~~l~~  140 (424)
                      +.+     .+..-++|||+++.+..  ...+ .. -.-..++.+|++ ++...+.+   +....+.+.+++.+++.+.+.
T Consensus        98 ~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~  177 (319)
T PRK06090         98 RLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLK  177 (319)
T ss_pred             HHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHH
Confidence            222     23456999999998743  2222 11 122234555554 44445554   888899999999999998886


Q ss_pred             HHhcccCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045          141 EVVGVHLKKYPDIELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~  172 (424)
                      ....    .      .+..+++.++|.|....
T Consensus       178 ~~~~----~------~~~~~l~l~~G~p~~A~  199 (319)
T PRK06090        178 GQGI----T------VPAYALKLNMGSPLKTL  199 (319)
T ss_pred             HcCC----c------hHHHHHHHcCCCHHHHH
Confidence            5311    1      13467889999997643

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=97.06  E-value=0.0083  Score=61.50  Aligned_cols=142  Identities=15%  Similarity=0.175  Sum_probs=75.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL   83 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll   83 (424)
                      |.|+|++|+|||++|+.++....  ..|   +.++.+.      +....   .+     .........+.......+++|
T Consensus       188 ill~G~~G~GKt~~~~~~a~~~~--~~f---~~is~~~------~~~~~---~g-----~~~~~~~~~f~~a~~~~P~Ii  248 (644)
T PRK10733        188 VLMVGPPGTGKTLLAKAIAGEAK--VPF---FTISGSD------FVEMF---VG-----VGASRVRDMFEQAKKAAPCII  248 (644)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC--CCE---EEEehHH------hHHhh---hc-----ccHHHHHHHHHHHHhcCCcEE
Confidence            78999999999999999998773  333   2222211      11100   00     011112222223333468999


Q ss_pred             EEcCCCCcc----------------hhhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHH
Q 037045           84 FLDGVSSEI----------------NFKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAK  136 (424)
Q Consensus        84 vlD~~~~~~----------------~~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~  136 (424)
                      +||+++...                .+..+  .+-  ....+.-+|.||.......       ..+..+.+..-+.++-.
T Consensus       249 fIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~  328 (644)
T PRK10733        249 FIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE  328 (644)
T ss_pred             EehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHH
Confidence            999987641                11122  001  1122333444555444322       34577888888888888


Q ss_pred             HHHHHHhcccCCCCccHHHHHHHHHHhcCCc
Q 037045          137 KLFWEVVGVHLKKYPDIELVADSIVKECGGM  167 (424)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~  167 (424)
                      +++..+.........   .....+++.+.|+
T Consensus       329 ~Il~~~~~~~~l~~~---~d~~~la~~t~G~  356 (644)
T PRK10733        329 QILKVHMRRVPLAPD---IDAAIIARGTPGF  356 (644)
T ss_pred             HHHHHHhhcCCCCCc---CCHHHHHhhCCCC
Confidence            888887755421111   1234577777663

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.05  E-value=0.0039  Score=55.58  Aligned_cols=47  Identities=9%  Similarity=0.090  Sum_probs=34.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEII   52 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i   52 (424)
                      +++.|.|++|+|||++|.++.....  ..-..++|++...  +++++.+.+
T Consensus        22 s~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee--~~~~i~~~~   68 (237)
T TIGR03877        22 NVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEE--HPVQVRRNM   68 (237)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeC--CHHHHHHHH
Confidence            4789999999999999999877652  3356688888654  455555553

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.05  E-value=0.0092  Score=62.45  Aligned_cols=144  Identities=15%  Similarity=0.173  Sum_probs=75.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -|.|+|++|+|||+||+.+++..  ...|   +.++...      +.    ...    ...........+.........+
T Consensus       214 giLL~GppGtGKT~laraia~~~--~~~~---i~i~~~~------i~----~~~----~g~~~~~l~~lf~~a~~~~p~i  274 (733)
T TIGR01243       214 GVLLYGPPGTGKTLLAKAVANEA--GAYF---ISINGPE------IM----SKY----YGESEERLREIFKEAEENAPSI  274 (733)
T ss_pred             eEEEECCCCCChHHHHHHHHHHh--CCeE---EEEecHH------Hh----ccc----ccHHHHHHHHHHHHHHhcCCcE
Confidence            47899999999999999999977  2222   2222211      00    000    0001111222222233456789


Q ss_pred             EEEcCCCCcc-------------hhhhh-c-cC-CCCCCcEEEE-Eecchhhhc-------ccCceEEecCCCHHHHHHH
Q 037045           83 LFLDGVSSEI-------------NFKEI-G-MH-DDHGRGKVVF-ACRSREFCW-------QADGVIHVQQLCQREAKKL  138 (424)
Q Consensus        83 lvlD~~~~~~-------------~~~~~-~-~~-~~~~~~~iii-ttr~~~~~~-------~~~~~~~l~~l~~~~~~~l  138 (424)
                      |+||+++...             ....+ . +- ....+..++| +|.......       .....+.+...+.++..++
T Consensus       275 l~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~I  354 (733)
T TIGR01243       275 IFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEI  354 (733)
T ss_pred             EEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHH
Confidence            9999986531             11122 1 11 1122334444 444322111       2345778888888888888


Q ss_pred             HHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          139 FWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      +..........   .+.....+++.+.|+-
T Consensus       355 l~~~~~~~~l~---~d~~l~~la~~t~G~~  381 (733)
T TIGR01243       355 LKVHTRNMPLA---EDVDLDKLAEVTHGFV  381 (733)
T ss_pred             HHHHhcCCCCc---cccCHHHHHHhCCCCC
Confidence            88655332111   1223566888888865

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK08233 hypothetical protein; Provisional

Probab=97.03  E-value=0.0023  Score=54.39  Aligned_cols=25  Identities=44%  Similarity=0.498  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|++|+||||+|+.++....
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4899999999999999999998873

>PRK07952 DNA replication protein DnaC; Validated

Probab=97.02  E-value=0.0032  Score=56.01  Aligned_cols=97  Identities=12%  Similarity=0.208  Sum_probs=53.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      .+.++|.+|+|||+||..+++...  ..-..+++++      ..++...+-....  .....    ...+.+.+. +.=+
T Consensus       101 ~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it------~~~l~~~l~~~~~--~~~~~----~~~~l~~l~-~~dl  165 (244)
T PRK07952        101 SFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT------VADIMSAMKDTFS--NSETS----EEQLLNDLS-NVDL  165 (244)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE------HHHHHHHHHHHHh--hcccc----HHHHHHHhc-cCCE
Confidence            578999999999999999999884  3333456654      3444444433332  11111    122333344 2338


Q ss_pred             EEEcCCCCc--chhhhh-cc--C--CCCCCcEEEEEecc
Q 037045           83 LFLDGVSSE--INFKEI-GM--H--DDHGRGKVVFACRS  114 (424)
Q Consensus        83 lvlD~~~~~--~~~~~~-~~--~--~~~~~~~iiittr~  114 (424)
                      |||||+...  .+|+.- .+  .  .......+||||..
T Consensus       166 LvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl  204 (244)
T PRK07952        166 LVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS  204 (244)
T ss_pred             EEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence            888998654  333321 11  1  22334556666654

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.02  E-value=0.0046  Score=53.26  Aligned_cols=79  Identities=20%  Similarity=0.204  Sum_probs=44.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCc---eEEEEEeccCCCHHHHHHHHHHHh----c-ccccccChhHHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFD---IIFWENINTDGNIRDIQEIILERL----K-VNAKELNNDLRADIISK   74 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~l----~-~~~~~~~~~~~~~~l~~   74 (424)
                      ||+|.|++|+||||+|+.+...... ....   .+.................- ...    . ......+.+.....+..
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~p~a~d~~~l~~~l~~   78 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRDRK-GRGENRYNFDHPDAFDFDLLKEDLKA   78 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHHHH-HHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhhHh-hccccccCCCCccccCHHHHHHHHHH
Confidence            7999999999999999999999852 2222   23444433332222222211 111    0 11144555566666666


Q ss_pred             HhccCcEEE
Q 037045           75 ELNDRSYVL   83 (424)
Q Consensus        75 ~l~~~~~Ll   83 (424)
                      ...++.+-+
T Consensus        79 L~~g~~i~~   87 (194)
T PF00485_consen   79 LKNGGSIEI   87 (194)
T ss_dssp             HHTTSCEEE
T ss_pred             HhCCCcccc
Confidence            555565544

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.01  E-value=0.0021  Score=54.76  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|.|.|++|+||||+|+.+++..
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~   23 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENF   23 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999999977

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.01  E-value=0.0015  Score=59.03  Aligned_cols=26  Identities=31%  Similarity=0.314  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      |+.|.|+|.+|+||||+|+++.+...
T Consensus         1 MpLiil~G~P~SGKTt~a~~L~~~~~   26 (270)
T PF08433_consen    1 MPLIILCGLPCSGKTTRAKELKKYLE   26 (270)
T ss_dssp             E-EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHH
Confidence            57899999999999999999999885

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.015  Score=57.99  Aligned_cols=142  Identities=11%  Similarity=0.205  Sum_probs=82.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL   83 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll   83 (424)
                      |.++|++|+|||-||..++....       .-+|++..+.       -+...+|.+     +......+.+.-..++|++
T Consensus       704 iLLyGppGcGKT~la~a~a~~~~-------~~fisvKGPE-------lL~KyIGaS-----Eq~vR~lF~rA~~a~PCiL  764 (952)
T KOG0735|consen  704 ILLYGPPGCGKTLLASAIASNSN-------LRFISVKGPE-------LLSKYIGAS-----EQNVRDLFERAQSAKPCIL  764 (952)
T ss_pred             eEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCHH-------HHHHHhccc-----HHHHHHHHHHhhccCCeEE
Confidence            67999999999999999998772       2356665551       111223322     2222333333334589999


Q ss_pred             EEcCCCCcc-------------hhhhh----ccCCCCCCcEEEE-Eecchhhhc------ccCceEEecCCCHHHHHHHH
Q 037045           84 FLDGVSSEI-------------NFKEI----GMHDDHGRGKVVF-ACRSREFCW------QADGVIHVQQLCQREAKKLF  139 (424)
Q Consensus        84 vlD~~~~~~-------------~~~~~----~~~~~~~~~~iii-ttr~~~~~~------~~~~~~~l~~l~~~~~~~l~  139 (424)
                      .||++++..             ...++    .-...-.|.-|+- |||.....+      .-++.+.-+.-++.|-.++|
T Consensus       765 FFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il  844 (952)
T KOG0735|consen  765 FFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEIL  844 (952)
T ss_pred             EeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHH
Confidence            999998741             23333    1112233444543 556544433      44444455556677788888


Q ss_pred             HHHhccc-CCCCccHHHHHHHHHHhcCCch
Q 037045          140 WEVVGVH-LKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       140 ~~~~~~~-~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      +...... ...    .-..+.++....|+-
T Consensus       845 ~~ls~s~~~~~----~vdl~~~a~~T~g~t  870 (952)
T KOG0735|consen  845 QVLSNSLLKDT----DVDLECLAQKTDGFT  870 (952)
T ss_pred             HHHhhccCCcc----ccchHHHhhhcCCCc
Confidence            8776533 112    223456777788775

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=97.00  E-value=0.012  Score=48.32  Aligned_cols=112  Identities=13%  Similarity=0.099  Sum_probs=61.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC---CCHHHHHHHHHHHhc-----ccc--cccChh-----
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD---GNIRDIQEIILERLK-----VNA--KELNND-----   66 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~-----~~~--~~~~~~-----   66 (424)
                      ..|-|++..|.||||+|-..+-+..  .+--.+.++.+-+.   ..-..+++.+ ..+.     ...  ...+..     
T Consensus         3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~   79 (159)
T cd00561           3 GLIQVYTGNGKGKTTAALGLALRAL--GHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA   79 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence            4688999999999999999988873  44344556554333   2223333333 1110     000  001111     


Q ss_pred             --HHHHHHHHHhccCcE-EEEEcCCCCcc-----hhhhh-c-cCCCCCCcEEEEEecchh
Q 037045           67 --LRADIISKELNDRSY-VLFLDGVSSEI-----NFKEI-G-MHDDHGRGKVVFACRSRE  116 (424)
Q Consensus        67 --~~~~~l~~~l~~~~~-LlvlD~~~~~~-----~~~~~-~-~~~~~~~~~iiittr~~~  116 (424)
                        +.....++.+....| |+|||++--..     +.+.+ . +.....+..+|+|.|+..
T Consensus        80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p  139 (159)
T cd00561          80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP  139 (159)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence              122344445555566 99999975431     22222 1 223444678999999854

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.00  E-value=0.0024  Score=53.77  Aligned_cols=26  Identities=35%  Similarity=0.432  Sum_probs=23.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      |+.|.+.|.+|+||||+|+++++...
T Consensus         1 mpLiIlTGyPgsGKTtfakeLak~L~   26 (261)
T COG4088           1 MPLIILTGYPGSGKTTFAKELAKELR   26 (261)
T ss_pred             CceEEEecCCCCCchHHHHHHHHHHH
Confidence            67899999999999999999998874

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=97.00  E-value=0.0024  Score=65.50  Aligned_cols=81  Identities=16%  Similarity=0.201  Sum_probs=56.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      +++-|+|++|+|||||+.+++....  ..-..++|++.....++.     .++.++...      ...+.++....+...
T Consensus        61 siteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~l  133 (790)
T PRK09519         61 RVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADML  133 (790)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHHH
Confidence            4778999999999999999877662  333568999987766643     555565543      333445556666665


Q ss_pred             hccC-cEEEEEcCCC
Q 037045           76 LNDR-SYVLFLDGVS   89 (424)
Q Consensus        76 l~~~-~~LlvlD~~~   89 (424)
                      ++.. --|+|+|.+.
T Consensus       134 v~~~~~~LVVIDSI~  148 (790)
T PRK09519        134 IRSGALDIVVIDSVA  148 (790)
T ss_pred             hhcCCCeEEEEcchh
Confidence            6554 5599999976

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.99  E-value=0.0087  Score=62.48  Aligned_cols=79  Identities=16%  Similarity=0.272  Sum_probs=45.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhcc-CcE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELND-RSY   81 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~   81 (424)
                      ++.++|+.|+|||.||+.+++...     ...+.++++...+..    .+...++........++ ...+.+.++. ...
T Consensus       486 ~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~----~~~~lig~~~gyvg~~~-~~~l~~~~~~~p~~  555 (731)
T TIGR02639       486 SFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH----TVSRLIGAPPGYVGFEQ-GGLLTEAVRKHPHC  555 (731)
T ss_pred             eEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----cHHHHhcCCCCCcccch-hhHHHHHHHhCCCe
Confidence            467899999999999999999772     234666665543211    12222232221111111 1223333433 356


Q ss_pred             EEEEcCCCCc
Q 037045           82 VLFLDGVSSE   91 (424)
Q Consensus        82 LlvlD~~~~~   91 (424)
                      +++||+++..
T Consensus       556 VvllDEieka  565 (731)
T TIGR02639       556 VLLLDEIEKA  565 (731)
T ss_pred             EEEEechhhc
Confidence            9999999865

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.99  E-value=0.00059  Score=54.32  Aligned_cols=22  Identities=45%  Similarity=0.552  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|++|+||||+|+++.+..
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999985

...

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.99  E-value=0.0013  Score=55.58  Aligned_cols=83  Identities=23%  Similarity=0.471  Sum_probs=45.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCce--EEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhcc--
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDI--IFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELND--   78 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~--   78 (424)
                      .|.|.|++|+||||+|+.+++... -.|.+.  .+|-.....   ..+...+...+.... -.+.+.....+...+..  
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~-i~hlstgd~~r~~~~~~---t~lg~~~k~~i~~g~-lv~d~i~~~~v~~rl~~~d   76 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLG-LPHLDTGDILRAAIAER---TELGEEIKKYIDKGE-LVPDEIVNGLVKERLDEAD   76 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC-CcEEcHhHHhHhhhccC---ChHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhhc
Confidence            478999999999999999999864 223331  122111122   333444434333333 22223333444444433  


Q ss_pred             -CcEEEEEcCCCCc
Q 037045           79 -RSYVLFLDGVSSE   91 (424)
Q Consensus        79 -~~~LlvlD~~~~~   91 (424)
                       .. .+|+|+.-..
T Consensus        77 ~~~-~~I~dg~PR~   89 (178)
T COG0563          77 CKA-GFILDGFPRT   89 (178)
T ss_pred             ccC-eEEEeCCCCc
Confidence             24 7888887554

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=96.98  E-value=0.0029  Score=56.79  Aligned_cols=71  Identities=17%  Similarity=0.336  Sum_probs=44.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL   83 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll   83 (424)
                      +.++|++|+|||.||..+.+... +..+. +.++      +..++..++......       +.....+.+.+ .+-=||
T Consensus       108 l~l~G~~G~GKThLa~Ai~~~l~-~~g~s-v~f~------~~~el~~~Lk~~~~~-------~~~~~~l~~~l-~~~dlL  171 (254)
T COG1484         108 LVLLGPPGVGKTHLAIAIGNELL-KAGIS-VLFI------TAPDLLSKLKAAFDE-------GRLEEKLLREL-KKVDLL  171 (254)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHH-HcCCe-EEEE------EHHHHHHHHHHHHhc-------CchHHHHHHHh-hcCCEE
Confidence            68999999999999999999995 33333 4443      455566666555442       11122222211 123389


Q ss_pred             EEcCCCC
Q 037045           84 FLDGVSS   90 (424)
Q Consensus        84 vlD~~~~   90 (424)
                      ||||+.-
T Consensus       172 IiDDlG~  178 (254)
T COG1484         172 IIDDIGY  178 (254)
T ss_pred             EEecccC
Confidence            9999765

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=96.98  E-value=0.014  Score=57.19  Aligned_cols=158  Identities=19%  Similarity=0.076  Sum_probs=92.1

Q ss_pred             EEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHH--hcccc----cccChhHHHHHHHHHh---
Q 037045            6 IWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILER--LKVNA----KELNNDLRADIISKEL---   76 (424)
Q Consensus         6 I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~--l~~~~----~~~~~~~~~~~l~~~l---   76 (424)
                      ..|+-|+||||+|+-++...- +.+-      ....+++--...+.|...  +..-+    .....++......+..   
T Consensus        43 fsG~RGvGKTt~Ari~AkalN-C~~~------~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P  115 (515)
T COG2812          43 FSGPRGVGKTTIARILAKALN-CENG------PTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAP  115 (515)
T ss_pred             hcCCCCcCchhHHHHHHHHhc-CCCC------CCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCC
Confidence            579999999999999998763 1110      112222333333444333  11111    2223333232222222   


Q ss_pred             -ccCcEEEEEcCCCCcc--hhhhhccCCCCCC--cEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccC
Q 037045           77 -NDRSYVLFLDGVSSEI--NFKEIGMHDDHGR--GKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHL  147 (424)
Q Consensus        77 -~~~~~LlvlD~~~~~~--~~~~~~~~~~~~~--~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~  147 (424)
                       .++--++|||+++-.+  .+..+.-....+.  .+.|+.|++....+    +....+.+..++.++-.+.+...+..+ 
T Consensus       116 ~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E-  194 (515)
T COG2812         116 SEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKE-  194 (515)
T ss_pred             ccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhc-
Confidence             1234599999997653  4555522223333  34445555444444    889999999999999999999988766 


Q ss_pred             CCCccHHHHHHHHHHhcCCchHHHH
Q 037045          148 KKYPDIELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       148 ~~~~~~~~~~~~I~~~~~g~Plai~  172 (424)
                       .-...++....|++...|.....-
T Consensus       195 -~I~~e~~aL~~ia~~a~Gs~RDal  218 (515)
T COG2812         195 -GINIEEDALSLIARAAEGSLRDAL  218 (515)
T ss_pred             -CCccCHHHHHHHHHHcCCChhhHH
Confidence             233446677888888888665433

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.0043  Score=61.71  Aligned_cols=132  Identities=17%  Similarity=0.220  Sum_probs=74.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      ++++.+||+|||||++|+.++...  .+.|   +-++++.-.+..++.-+=     .+....=.+..+.-++ ..+-.+=
T Consensus       439 kIlCf~GPPGVGKTSI~kSIA~AL--nRkF---fRfSvGG~tDvAeIkGHR-----RTYVGAMPGkiIq~LK-~v~t~NP  507 (906)
T KOG2004|consen  439 KILCFVGPPGVGKTSIAKSIARAL--NRKF---FRFSVGGMTDVAEIKGHR-----RTYVGAMPGKIIQCLK-KVKTENP  507 (906)
T ss_pred             cEEEEeCCCCCCcccHHHHHHHHh--CCce---EEEeccccccHHhhcccc-----eeeeccCChHHHHHHH-hhCCCCc
Confidence            589999999999999999999988  4555   334666655544433110     0111111111222222 2233567


Q ss_pred             EEEEcCCCCcc---------hhhhhccCCC------------CCCcEEE-EEecch-hhhc----ccCceEEecCCCHHH
Q 037045           82 VLFLDGVSSEI---------NFKEIGMHDD------------HGRGKVV-FACRSR-EFCW----QADGVIHVQQLCQRE  134 (424)
Q Consensus        82 LlvlD~~~~~~---------~~~~~~~~~~------------~~~~~ii-ittr~~-~~~~----~~~~~~~l~~l~~~~  134 (424)
                      |+.||.++...         .+-++.-|.+            ..=|+|+ |+|-+. +..+    ....+|++.+...+|
T Consensus       508 liLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eE  587 (906)
T KOG2004|consen  508 LILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEE  587 (906)
T ss_pred             eEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHH
Confidence            88899987531         1111111100            1124454 444332 2222    667899999999999


Q ss_pred             HHHHHHHHhc
Q 037045          135 AKKLFWEVVG  144 (424)
Q Consensus       135 ~~~l~~~~~~  144 (424)
                      -+++..+++.
T Consensus       588 Kv~IA~~yLi  597 (906)
T KOG2004|consen  588 KVKIAERYLI  597 (906)
T ss_pred             HHHHHHHhhh
Confidence            8888877763

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=96.97  E-value=0.016  Score=61.60  Aligned_cols=82  Identities=15%  Similarity=0.203  Sum_probs=45.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhcc-CcE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELND-RSY   81 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~   81 (424)
                      ++.+.|+.|+|||++|+.+++...  ......+.++++...+....    ..-++.+......++ ...+.+.++. ...
T Consensus       597 ~~Lf~Gp~GvGKt~lA~~La~~l~--~~~~~~i~~d~s~~~~~~~~----~~l~g~~~g~~g~~~-~g~l~~~v~~~p~~  669 (852)
T TIGR03346       597 SFLFLGPTGVGKTELAKALAEFLF--DDEDAMVRIDMSEYMEKHSV----ARLIGAPPGYVGYEE-GGQLTEAVRRKPYS  669 (852)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhhcccchH----HHhcCCCCCccCccc-ccHHHHHHHcCCCc
Confidence            577899999999999999999872  33344566666654331111    112232221111111 1122233333 345


Q ss_pred             EEEEcCCCCc
Q 037045           82 VLFLDGVSSE   91 (424)
Q Consensus        82 LlvlD~~~~~   91 (424)
                      +|+||+++..
T Consensus       670 vlllDeieka  679 (852)
T TIGR03346       670 VVLFDEVEKA  679 (852)
T ss_pred             EEEEeccccC
Confidence            9999999875

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK09183 transposase/IS protein; Provisional

Probab=96.97  E-value=0.004  Score=56.15  Aligned_cols=23  Identities=39%  Similarity=0.579  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+.|+|++|+|||+||..++...
T Consensus       104 ~v~l~Gp~GtGKThLa~al~~~a  126 (259)
T PRK09183        104 NIVLLGPSGVGKTHLAIALGYEA  126 (259)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998876

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=96.96  E-value=0.0093  Score=62.98  Aligned_cols=83  Identities=16%  Similarity=0.131  Sum_probs=44.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc-cCc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN-DRS   80 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~~   80 (424)
                      .++.++|+.|+|||.+|+.+++...  ......+-++++.+.+..    .+..-++.+......++.. .+.+.++ ...
T Consensus       597 ~~~lf~Gp~GvGKT~lA~~La~~l~--~~~~~~~~~dmse~~~~~----~~~~l~g~~~gyvg~~~~g-~L~~~v~~~p~  669 (852)
T TIGR03345       597 GVFLLVGPSGVGKTETALALAELLY--GGEQNLITINMSEFQEAH----TVSRLKGSPPGYVGYGEGG-VLTEAVRRKPY  669 (852)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHh--CCCcceEEEeHHHhhhhh----hhccccCCCCCcccccccc-hHHHHHHhCCC
Confidence            4678999999999999999998872  223333444444432211    1112223322111111111 1223333 345


Q ss_pred             EEEEEcCCCCc
Q 037045           81 YVLFLDGVSSE   91 (424)
Q Consensus        81 ~LlvlD~~~~~   91 (424)
                      .+|+||+++..
T Consensus       670 svvllDEieka  680 (852)
T TIGR03345       670 SVVLLDEVEKA  680 (852)
T ss_pred             cEEEEechhhc
Confidence            69999999764

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=96.95  E-value=0.0044  Score=57.73  Aligned_cols=55  Identities=16%  Similarity=0.157  Sum_probs=40.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCC----CCceEEEEEeccCCCHHHHHHHHHHHhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESR----RFDIIFWENINTDGNIRDIQEIILERLK   57 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~   57 (424)
                      +++-|+|++|+|||+++.+++.......    .-..++||+....++++.+.+ +++.++
T Consensus        96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~g  154 (310)
T TIGR02236        96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARG  154 (310)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcC
Confidence            4788999999999999999988763211    113699999988888777654 344443

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=96.93  E-value=0.0028  Score=51.97  Aligned_cols=24  Identities=33%  Similarity=0.391  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +|.|.|.+|+||||+|+.+.....
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~   24 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLF   24 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999873

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.93  E-value=0.0044  Score=60.56  Aligned_cols=87  Identities=17%  Similarity=0.213  Sum_probs=47.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC-HHHHHHHHHHHhcccc-cccChhHHHHHHHHHhccC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN-IRDIQEIILERLKVNA-KELNNDLRADIISKELNDR   79 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~~   79 (424)
                      ++|+|+|+.|+||||++.+++.....+.....+..++...+.. ..+.++.....++... ...+.......+. .+. .
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~-~l~-~  428 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE-RLR-D  428 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH-Hhc-c
Confidence            5899999999999999999998763222234466666543321 2222223333333322 2222233333333 233 3


Q ss_pred             cEEEEEcCCCC
Q 037045           80 SYVLFLDGVSS   90 (424)
Q Consensus        80 ~~LlvlD~~~~   90 (424)
                      .-+|++|....
T Consensus       429 ~DLVLIDTaG~  439 (559)
T PRK12727        429 YKLVLIDTAGM  439 (559)
T ss_pred             CCEEEecCCCc
Confidence            44888898753

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=96.92  E-value=0.0056  Score=57.27  Aligned_cols=56  Identities=16%  Similarity=0.148  Sum_probs=40.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccC---C-CCceEEEEEeccCCCHHHHHHHHHHHhcc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGES---R-RFDIIFWENINTDGNIRDIQEIILERLKV   58 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~   58 (424)
                      .++-|+|++|+|||+++..++-.....   . .-..++|++....++++.+. ++++.++.
T Consensus       124 ~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~  183 (342)
T PLN03186        124 SITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL  183 (342)
T ss_pred             eEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence            467899999999999999888654211   1 11369999999988888765 44555543

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=96.92  E-value=0.023  Score=52.94  Aligned_cols=64  Identities=8%  Similarity=-0.004  Sum_probs=39.1

Q ss_pred             CcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHHHHHHHHHH
Q 037045           79 RSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQREAKKLFWEV  142 (424)
Q Consensus        79 ~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~~~~l~~~~  142 (424)
                      ++-++|+|+++....  ...+  .+-....++.+|++|.+.. +.+   .....+.+.+++.+++.+.+.+.
T Consensus       113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~  184 (325)
T PRK08699        113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER  184 (325)
T ss_pred             CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence            344566788877532  1111  0111123466676776644 333   67888999999999998888653

>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B

Probab=96.91  E-value=0.0051  Score=55.15  Aligned_cols=89  Identities=11%  Similarity=0.098  Sum_probs=57.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhcc--CCCCceEEEEEeccC-CCHHHHHHHHHHHhcc--cc-----cccChhH-----
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGE--SRRFDIIFWENINTD-GNIRDIQEIILERLKV--NA-----KELNNDL-----   67 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~--~~-----~~~~~~~-----   67 (424)
                      -++|.|.+|+|||+|+.++.++...  +.+-+.++++-+++. .+..++.+++...=..  ..     ...+...     
T Consensus        71 R~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~  150 (276)
T cd01135          71 KIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITP  150 (276)
T ss_pred             EEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHH
Confidence            5789999999999999999887631  233577899988875 4566777766554221  11     1111111     


Q ss_pred             -HHHHHHHHhc---cCcEEEEEcCCCCc
Q 037045           68 -RADIISKELN---DRSYVLFLDGVSSE   91 (424)
Q Consensus        68 -~~~~l~~~l~---~~~~LlvlD~~~~~   91 (424)
                       ..-.+.++++   ++++|+++||+-..
T Consensus       151 ~~a~aiAEyfrd~~g~~VLl~~D~ltr~  178 (276)
T cd01135         151 RMALTTAEYLAYEKGKHVLVILTDMTNY  178 (276)
T ss_pred             HHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence             1123344443   57999999998654

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.91  E-value=0.0054  Score=54.37  Aligned_cols=115  Identities=16%  Similarity=0.185  Sum_probs=69.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-----CCCHHHHHHHHHHHhcccc-------cccChhHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-----DGNIRDIQEIILERLKVNA-------KELNNDLRA   69 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~   69 (424)
                      .+++|+|.+|+||||+++.+..-.  +.....+.| .-..     .....+...+++...+...       .+.+-++.+
T Consensus        40 e~~glVGESG~GKSTlgr~i~~L~--~pt~G~i~f-~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ  116 (268)
T COG4608          40 ETLGLVGESGCGKSTLGRLILGLE--EPTSGEILF-EGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ  116 (268)
T ss_pred             CEEEEEecCCCCHHHHHHHHHcCc--CCCCceEEE-cCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence            368999999999999999999877  233333333 3111     2233445566667666544       233333333


Q ss_pred             H-HHHHHhccCcEEEEEcCCCCcchh---hhh-c-cC--CCCCCcEEEEEecchhhhc
Q 037045           70 D-IISKELNDRSYVLFLDGVSSEINF---KEI-G-MH--DDHGRGKVVFACRSREFCW  119 (424)
Q Consensus        70 ~-~l~~~l~~~~~LlvlD~~~~~~~~---~~~-~-~~--~~~~~~~iiittr~~~~~~  119 (424)
                      . .+.+.+.-+.-++|.|...+..|.   .++ . +.  ....+-..+..|.+-.+..
T Consensus       117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~  174 (268)
T COG4608         117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVR  174 (268)
T ss_pred             hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhh
Confidence            3 345556678899999997765432   111 0 11  3444666777777776665

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.0077  Score=55.41  Aligned_cols=137  Identities=15%  Similarity=0.238  Sum_probs=77.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh----cc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL----ND   78 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~   78 (424)
                      -|.++||+|+|||-||+.++.+.  ...|-.+   .++...+ +.+                 ++..+.++..+    +=
T Consensus       129 GiLL~GPpG~GKTmlAKA~Akea--ga~fInv---~~s~lt~-KWf-----------------gE~eKlv~AvFslAsKl  185 (386)
T KOG0737|consen  129 GILLYGPPGTGKTMLAKAIAKEA--GANFINV---SVSNLTS-KWF-----------------GEAQKLVKAVFSLASKL  185 (386)
T ss_pred             cceecCCCCchHHHHHHHHHHHc--CCCccee---eccccch-hhH-----------------HHHHHHHHHHHhhhhhc
Confidence            47789999999999999999988  4555322   2222111 111                 11112222211    12


Q ss_pred             CcEEEEEcCCCCcc--------------------hhhhhccCCCCCCcEEEE---Eecchhhhc----ccCceEEecCCC
Q 037045           79 RSYVLFLDGVSSEI--------------------NFKEIGMHDDHGRGKVVF---ACRSREFCW----QADGVIHVQQLC  131 (424)
Q Consensus        79 ~~~LlvlD~~~~~~--------------------~~~~~~~~~~~~~~~iii---ttr~~~~~~----~~~~~~~l~~l~  131 (424)
                      +++.+.+|.+++..                    .|+.+   ....+++|+|   |.|..+...    .....+.+.--+
T Consensus       186 ~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl---~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~  262 (386)
T KOG0737|consen  186 QPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGL---SSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPD  262 (386)
T ss_pred             CcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccc---cCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCc
Confidence            57888888876531                    12222   2334556665   666655544    556666666555


Q ss_pred             HHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          132 QREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      .++-.++++-....+...+   +-...+|++.+.|+-
T Consensus       263 ~~qR~kILkviLk~e~~e~---~vD~~~iA~~t~GyS  296 (386)
T KOG0737|consen  263 AEQRRKILKVILKKEKLED---DVDLDEIAQMTEGYS  296 (386)
T ss_pred             hhhHHHHHHHHhcccccCc---ccCHHHHHHhcCCCc
Confidence            5666666666665442111   113566888888874

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.89  E-value=0.00062  Score=55.69  Aligned_cols=35  Identities=26%  Similarity=0.234  Sum_probs=28.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN   38 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~   38 (424)
                      -+|.|+|.+|+||||||+.+.+...  ..-..+.+++
T Consensus         3 ~vIwltGlsGsGKtTlA~~L~~~L~--~~g~~~~~LD   37 (156)
T PF01583_consen    3 FVIWLTGLSGSGKTTLARALERRLF--ARGIKVYLLD   37 (156)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHH--HTTS-EEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEec
Confidence            3799999999999999999999994  4445566665

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=96.89  E-value=0.018  Score=47.94  Aligned_cols=112  Identities=15%  Similarity=0.182  Sum_probs=57.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCc------------------eEEEEEeccC---CCHHHHHHHHHHHhccccc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFD------------------IIFWENINTD---GNIRDIQEIILERLKVNAK   61 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~------------------~~~wv~~~~~---~~~~~~~~~i~~~l~~~~~   61 (424)
                      .+.++|+.|+||+++|..+++..--.....                  -+.|+.-...   ...+++. ++...+.... 
T Consensus        21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir-~i~~~~~~~~-   98 (162)
T PF13177_consen   21 ALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIR-EIIEFLSLSP-   98 (162)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHH-HHHHHCTSS--
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHH-HHHHHHHHHH-
Confidence            467999999999999999998874322221                  1223221111   1222222 2222221110 


Q ss_pred             ccChhHHHHHHHHHhccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCC
Q 037045           62 ELNNDLRADIISKELNDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQL  130 (424)
Q Consensus        62 ~~~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l  130 (424)
                                    ..+..=++|||+++.+..  ...+  .+-....++.+|++|++.....    +....+.+.++
T Consensus        99 --------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~l  161 (162)
T PF13177_consen   99 --------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPL  161 (162)
T ss_dssp             --------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE---
T ss_pred             --------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCC
Confidence                          013466999999998643  2222  1113445778888777665433    66666666655

...

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.88  E-value=0.013  Score=51.30  Aligned_cols=141  Identities=15%  Similarity=0.164  Sum_probs=80.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh----c
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL----N   77 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~   77 (424)
                      +-|..+|++|+|||-+|+.+++..+  -.|-     .+..       .+-|-+.         .++...++++..    +
T Consensus       152 knVLFyGppGTGKTm~Akalane~k--vp~l-----~vka-------t~liGeh---------VGdgar~Ihely~rA~~  208 (368)
T COG1223         152 KNVLFYGPPGTGKTMMAKALANEAK--VPLL-----LVKA-------TELIGEH---------VGDGARRIHELYERARK  208 (368)
T ss_pred             ceeEEECCCCccHHHHHHHHhcccC--CceE-----Eech-------HHHHHHH---------hhhHHHHHHHHHHHHHh
Confidence            3477899999999999999999883  3221     1111       1111111         223344444433    2


Q ss_pred             cCcEEEEEcCCCCcc----------h----hhhh----ccCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHH
Q 037045           78 DRSYVLFLDGVSSEI----------N----FKEI----GMHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQRE  134 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~----------~----~~~~----~~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~  134 (424)
                      ..+|++.+|.++-..          |    ...+    .-...+.|...|-.|...+...     .....++..--+.+|
T Consensus       209 ~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eE  288 (368)
T COG1223         209 AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEE  288 (368)
T ss_pred             cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHH
Confidence            358999999987531          1    2222    1113344544554454433333     455667777778899


Q ss_pred             HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      -.+++..++..-.-+   .+...+.++.+.+|+.
T Consensus       289 r~~ile~y~k~~Plp---v~~~~~~~~~~t~g~S  319 (368)
T COG1223         289 RLEILEYYAKKFPLP---VDADLRYLAAKTKGMS  319 (368)
T ss_pred             HHHHHHHHHHhCCCc---cccCHHHHHHHhCCCC
Confidence            999999888654211   1223566777777764

>PRK08939 primosomal protein DnaI; Reviewed

Probab=96.88  E-value=0.0026  Score=58.75  Aligned_cols=95  Identities=13%  Similarity=0.217  Sum_probs=54.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -+.|+|+.|+|||.||..+++...  ..--.+.++.+      .+++.++...+...    +..   ..+. .+ .+-=|
T Consensus       158 gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~~~~~------~~l~~~lk~~~~~~----~~~---~~l~-~l-~~~dl  220 (306)
T PRK08939        158 GLYLYGDFGVGKSYLLAAIANELA--KKGVSSTLLHF------PEFIRELKNSISDG----SVK---EKID-AV-KEAPV  220 (306)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEEH------HHHHHHHHHHHhcC----cHH---HHHH-Hh-cCCCE
Confidence            378999999999999999999984  22233455443      34555555544321    111   1222 12 23458


Q ss_pred             EEEcCCCCc--chhhh--hccC----CCCCCcEEEEEecc
Q 037045           83 LFLDGVSSE--INFKE--IGMH----DDHGRGKVVFACRS  114 (424)
Q Consensus        83 lvlD~~~~~--~~~~~--~~~~----~~~~~~~iiittr~  114 (424)
                      |||||+.-.  ..|..  +...    ....+-.+|+||..
T Consensus       221 LiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl  260 (306)
T PRK08939        221 LMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF  260 (306)
T ss_pred             EEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence            999998643  34433  2111    22345567777754

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=96.87  E-value=0.047  Score=51.10  Aligned_cols=83  Identities=13%  Similarity=0.089  Sum_probs=51.7

Q ss_pred             CcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEE-EEecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCCC
Q 037045           79 RSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVV-FACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKKY  150 (424)
Q Consensus        79 ~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~ii-ittr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~  150 (424)
                      +.-++|||+++.+..  ...+ . +-.-..++.+| +|++...+.+   +....+.+.+++.++..+.+....  .  . 
T Consensus       132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~--~--~-  206 (342)
T PRK06964        132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG--V--A-  206 (342)
T ss_pred             CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC--C--C-
Confidence            455899999998743  2222 1 11223344444 5555455554   678899999999999998887641  1  1 


Q ss_pred             ccHHHHHHHHHHhcCCchHHH
Q 037045          151 PDIELVADSIVKECGGMPYML  171 (424)
Q Consensus       151 ~~~~~~~~~I~~~~~g~Plai  171 (424)
                       .    ...++..++|.|...
T Consensus       207 -~----~~~~l~~~~Gsp~~A  222 (342)
T PRK06964        207 -D----ADALLAEAGGAPLAA  222 (342)
T ss_pred             -h----HHHHHHHcCCCHHHH
Confidence             1    223577889999643

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.87  E-value=0.0049  Score=51.43  Aligned_cols=119  Identities=18%  Similarity=0.158  Sum_probs=61.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC--CHHHHHHHHHHHhcccccccChhHH-HHHHHHHhcc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG--NIRDIQEIILERLKVNAKELNNDLR-ADIISKELND   78 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~-~~~l~~~l~~   78 (424)
                      .+++|.|+.|+|||||.+.++-..   ....+.++++-....  +..+.   ..+.++.-.. .+.++. .-.+.+.+-.
T Consensus        27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~q-LS~G~~qrl~laral~~   99 (163)
T cd03216          27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDA---RRAGIAMVYQ-LSVGERQMVEIARALAR   99 (163)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHH---HhcCeEEEEe-cCHHHHHHHHHHHHHhc
Confidence            378999999999999999998765   233455554422111  11111   1111221111 222222 2233344445


Q ss_pred             CcEEEEEcCCCCcchhhhh-----ccC-CCCCCcEEEEEecchhhhc-ccCceEEe
Q 037045           79 RSYVLFLDGVSSEINFKEI-----GMH-DDHGRGKVVFACRSREFCW-QADGVIHV  127 (424)
Q Consensus        79 ~~~LlvlD~~~~~~~~~~~-----~~~-~~~~~~~iiittr~~~~~~-~~~~~~~l  127 (424)
                      .+-++++|+.....|....     .+. ....+..||++|.+..... ..+..+.+
T Consensus       100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l  155 (163)
T cd03216         100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVL  155 (163)
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            6778888997654332211     111 1223667888888766443 33444444

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=96.86  E-value=0.0065  Score=54.89  Aligned_cols=38  Identities=18%  Similarity=0.294  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      +++.|.|++|+|||++|.+++....  ..-..++|++...
T Consensus        37 s~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee   74 (259)
T TIGR03878        37 SVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVES   74 (259)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecC
Confidence            4788999999999999999877652  3345688888764

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=96.85  E-value=0.0021  Score=55.28  Aligned_cols=40  Identities=28%  Similarity=0.465  Sum_probs=28.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCC--------ceEEEEEeccC
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRF--------DIIFWENINTD   42 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f--------~~~~wv~~~~~   42 (424)
                      ++.|.|++|+|||+++.+++........|        ..++|++....
T Consensus        34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~   81 (193)
T PF13481_consen   34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS   81 (193)
T ss_dssp             EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence            67899999999999999999887542222        35888876555

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.85  E-value=0.0028  Score=51.32  Aligned_cols=75  Identities=21%  Similarity=0.218  Sum_probs=44.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc-cccChhHHHHHHHHHhccCcEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA-KELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      |.|+|++|+|||+||+.+++..  ..   ...-+.++...+..++....--.-+... .........        .+..+
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~--~~---~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--------~~~~i   68 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL--GR---PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--------RKGGI   68 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH--TC---EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--------HEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHh--hc---ceEEEEeccccccccceeeeeecccccccccccccccc--------cceeE
Confidence            6799999999999999999988  12   2445677777777766543221100000 010000000        17899


Q ss_pred             EEEcCCCCc
Q 037045           83 LFLDGVSSE   91 (424)
Q Consensus        83 lvlD~~~~~   91 (424)
                      +|||++...
T Consensus        69 l~lDEin~a   77 (139)
T PF07728_consen   69 LVLDEINRA   77 (139)
T ss_dssp             EEESSCGG-
T ss_pred             EEECCcccC
Confidence            999999853

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.85  E-value=0.0011  Score=46.40  Aligned_cols=23  Identities=35%  Similarity=0.525  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|+|.|.+|+||||+++.+.+..
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999986

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.84  E-value=0.012  Score=49.93  Aligned_cols=123  Identities=20%  Similarity=0.260  Sum_probs=63.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc--CCCHHHHHH------HHHHHhcccc------cccChhH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT--DGNIRDIQE------IILERLKVNA------KELNNDL   67 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~------~i~~~l~~~~------~~~~~~~   67 (424)
                      .+++|.|+.|+|||||++.++-...   ...+.++++-..  ..+......      ++++.++...      ...+.++
T Consensus        26 ~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~  102 (180)
T cd03214          26 EIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE  102 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence            3789999999999999999988652   234444443111  112222211      1344444332      1122222


Q ss_pred             HH-HHHHHHhccCcEEEEEcCCCCcchhhhh-----ccC--CCCCCcEEEEEecchhhhc-ccCceEEe
Q 037045           68 RA-DIISKELNDRSYVLFLDGVSSEINFKEI-----GMH--DDHGRGKVVFACRSREFCW-QADGVIHV  127 (424)
Q Consensus        68 ~~-~~l~~~l~~~~~LlvlD~~~~~~~~~~~-----~~~--~~~~~~~iiittr~~~~~~-~~~~~~~l  127 (424)
                      .. -.+...+-..+-++++|+.-...|.+..     .+.  ....+..+|++|....... -.+..+.+
T Consensus       103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l  171 (180)
T cd03214         103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILL  171 (180)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            21 2334444557788999997654332221     111  1122567888888766543 33444444

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.83  E-value=0.0077  Score=54.67  Aligned_cols=88  Identities=22%  Similarity=0.209  Sum_probs=49.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCH-HHHHHHHHHHhcccc----cccCh-hHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNI-RDIQEIILERLKVNA----KELNN-DLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~~l~~~~----~~~~~-~~~~~~l~~~   75 (424)
                      ++++++|++|+||||.+.+++....  ..-..+..++....... ..-++...+..+...    ...+. ......+...
T Consensus        73 ~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~  150 (272)
T TIGR00064        73 NVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA  150 (272)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence            5889999999999999999998873  33345777776543221 222333344444332    11111 1112223332


Q ss_pred             hccCcEEEEEcCCCCc
Q 037045           76 LNDRSYVLFLDGVSSE   91 (424)
Q Consensus        76 l~~~~~LlvlD~~~~~   91 (424)
                      .....=++++|-.-..
T Consensus       151 ~~~~~D~ViIDT~G~~  166 (272)
T TIGR00064       151 KARNIDVVLIDTAGRL  166 (272)
T ss_pred             HHCCCCEEEEeCCCCC
Confidence            2233448889987543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.83  E-value=0.0077  Score=56.48  Aligned_cols=87  Identities=16%  Similarity=0.151  Sum_probs=53.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC-HHHHHHHHHHHhcccc-cccChhHHHHHHHHHhc-c
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN-IRDIQEIILERLKVNA-KELNNDLRADIISKELN-D   78 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~-~   78 (424)
                      ++++++|+.|+||||++.+++....  ..-..+.+++...... ...-++...+.++.+. ...+..+....+...-. +
T Consensus       207 ~ii~lvGptGvGKTTt~akLA~~l~--~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~  284 (407)
T PRK12726        207 RIISLIGQTGVGKTTTLVKLGWQLL--KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN  284 (407)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence            5899999999999999999998773  2224577787766533 2334445555555443 33344444333332211 2


Q ss_pred             CcEEEEEcCCCC
Q 037045           79 RSYVLFLDGVSS   90 (424)
Q Consensus        79 ~~~LlvlD~~~~   90 (424)
                      ..=++++|-...
T Consensus       285 ~~D~VLIDTAGr  296 (407)
T PRK12726        285 CVDHILIDTVGR  296 (407)
T ss_pred             CCCEEEEECCCC
Confidence            345888888755

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.83  E-value=0.0016  Score=52.65  Aligned_cols=25  Identities=44%  Similarity=0.606  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhcc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGE   27 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~   27 (424)
                      -|+|.|++|+||||+++++++....
T Consensus         7 ki~ITG~PGvGKtTl~~ki~e~L~~   31 (179)
T COG1618           7 KIFITGRPGVGKTTLVLKIAEKLRE   31 (179)
T ss_pred             EEEEeCCCCccHHHHHHHHHHHHHh
Confidence            4789999999999999999998864

>PRK13695 putative NTPase; Provisional

Probab=96.82  E-value=0.0023  Score=54.10  Aligned_cols=24  Identities=46%  Similarity=0.650  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .|+|.|.+|+|||||++.++....
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~   25 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLK   25 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999988764

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.80  E-value=0.0079  Score=53.53  Aligned_cols=46  Identities=13%  Similarity=0.143  Sum_probs=34.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEI   51 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~   51 (424)
                      +++.|.|++|+|||+++.+++....  ..-..++|++...  +++++.+.
T Consensus        26 ~~~~i~G~~GsGKt~l~~~~~~~~~--~~g~~~~y~~~e~--~~~~~~~~   71 (234)
T PRK06067         26 SLILIEGDHGTGKSVLSQQFVYGAL--KQGKKVYVITTEN--TSKSYLKQ   71 (234)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHHH--hCCCEEEEEEcCC--CHHHHHHH
Confidence            4789999999999999999977652  3445688988854  34555554

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=96.80  E-value=0.01  Score=61.95  Aligned_cols=132  Identities=14%  Similarity=0.159  Sum_probs=72.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      .++.++|++|+||||+|+.++...  ...|-   -++++...+...+...-....     ....+.....+.+ ....+-
T Consensus       350 ~~i~l~GppG~GKTtl~~~ia~~l--~~~~~---~i~~~~~~d~~~i~g~~~~~~-----g~~~G~~~~~l~~-~~~~~~  418 (784)
T PRK10787        350 PILCLVGPPGVGKTSLGQSIAKAT--GRKYV---RMALGGVRDEAEIRGHRRTYI-----GSMPGKLIQKMAK-VGVKNP  418 (784)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh--CCCEE---EEEcCCCCCHHHhccchhccC-----CCCCcHHHHHHHh-cCCCCC
Confidence            468999999999999999999877  33332   233444434332221111111     1111222222222 122445


Q ss_pred             EEEEcCCCCcch------hhhh-----------------ccCCCCCCcEEEEEecchhhhc---ccCceEEecCCCHHHH
Q 037045           82 VLFLDGVSSEIN------FKEI-----------------GMHDDHGRGKVVFACRSREFCW---QADGVIHVQQLCQREA  135 (424)
Q Consensus        82 LlvlD~~~~~~~------~~~~-----------------~~~~~~~~~~iiittr~~~~~~---~~~~~~~l~~l~~~~~  135 (424)
                      +++||+++....      .+.+                 .++..-++.-+|.|+.+..+.+   ....++++.+++++|-
T Consensus       419 villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek  498 (784)
T PRK10787        419 LFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEK  498 (784)
T ss_pred             EEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHH
Confidence            789999876421      1111                 0011123344444554443333   6667899999999999


Q ss_pred             HHHHHHHhc
Q 037045          136 KKLFWEVVG  144 (424)
Q Consensus       136 ~~l~~~~~~  144 (424)
                      .++.+++..
T Consensus       499 ~~Ia~~~L~  507 (784)
T PRK10787        499 LNIAKRHLL  507 (784)
T ss_pred             HHHHHHhhh
Confidence            888877763

>PRK12597 F0F1 ATP synthase subunit beta; Provisional

Probab=96.80  E-value=0.0059  Score=59.13  Aligned_cols=87  Identities=18%  Similarity=0.262  Sum_probs=57.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccc-------cccChhH------H
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNA-------KELNNDL------R   68 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~------~   68 (424)
                      -++|.|.+|+|||||+.+++.... +.+-+.++++-++. .....++.+.+...-....       ...+...      .
T Consensus       145 R~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~  223 (461)
T PRK12597        145 KTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLT  223 (461)
T ss_pred             EEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHH
Confidence            479999999999999999998885 23567788887766 4566677777765422111       1111111      1


Q ss_pred             HHHHHHHh---ccCcEEEEEcCCCC
Q 037045           69 ADIISKEL---NDRSYVLFLDGVSS   90 (424)
Q Consensus        69 ~~~l~~~l---~~~~~LlvlD~~~~   90 (424)
                      .-.+.+++   .++++|+++|++-.
T Consensus       224 a~tiAEyfrd~~G~~VLl~~DslTR  248 (461)
T PRK12597        224 GLTIAEYLRDEEKEDVLLFIDNIFR  248 (461)
T ss_pred             HHHHHHHHHHhcCCceEEEeccchH
Confidence            22334444   26899999999855

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=96.79  E-value=0.001  Score=51.23  Aligned_cols=23  Identities=39%  Similarity=0.774  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhc
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      |.|+|++|+|||++|+.++.+..
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999998874

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.79  E-value=0.0057  Score=58.70  Aligned_cols=37  Identities=22%  Similarity=0.064  Sum_probs=27.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEec
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENIN   40 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~   40 (424)
                      .+|.++|+.|+||||++.+++.....+ . ..+..++..
T Consensus       101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~-G-~kV~lV~~D  137 (429)
T TIGR01425       101 NVIMFVGLQGSGKTTTCTKLAYYYQRK-G-FKPCLVCAD  137 (429)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHC-C-CCEEEEcCc
Confidence            589999999999999999999877422 2 245555543

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.78  E-value=0.0074  Score=53.02  Aligned_cols=40  Identities=20%  Similarity=0.117  Sum_probs=28.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD   42 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~   42 (424)
                      +|+|.|++|+||||+|+.++........-..+..+.....
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f   40 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF   40 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence            5899999999999999999998742111123555555443

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=96.77  E-value=0.0052  Score=49.74  Aligned_cols=45  Identities=24%  Similarity=0.280  Sum_probs=34.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA   60 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~   60 (424)
                      +|.|-|++|+||||+|+.+++...  -.     ++      +.-.+++++++.++.+-
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~g--l~-----~v------saG~iFR~~A~e~gmsl   46 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLG--LK-----LV------SAGTIFREMARERGMSL   46 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhC--Cc-----ee------eccHHHHHHHHHcCCCH
Confidence            689999999999999999999882  21     11      33357888888887664

>PRK10867 signal recognition particle protein; Provisional

Probab=96.76  E-value=0.007  Score=58.39  Aligned_cols=38  Identities=21%  Similarity=0.282  Sum_probs=27.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCC-CceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRR-FDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~   41 (424)
                      .+|.++|+.|+||||.+.+++....  .. -..+..|++..
T Consensus       101 ~vI~~vG~~GsGKTTtaakLA~~l~--~~~G~kV~lV~~D~  139 (433)
T PRK10867        101 TVIMMVGLQGAGKTTTAGKLAKYLK--KKKKKKVLLVAADV  139 (433)
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHH--HhcCCcEEEEEccc
Confidence            4789999999999999999988773  22 23355555443

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.75  E-value=0.0071  Score=58.49  Aligned_cols=86  Identities=19%  Similarity=0.206  Sum_probs=48.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-CHHHHHHHHHHHhcccccc-cChhHHHHHHH---HHh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-NIRDIQEIILERLKVNAKE-LNNDLRADIIS---KEL   76 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~---~~l   76 (424)
                      .+|.++|+.|+||||.+.+++..... ..+ .+..+++.... ...+.++.+..+++.+... ....+....+.   +.+
T Consensus        96 ~vI~lvG~~GsGKTTtaakLA~~L~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~  173 (437)
T PRK00771         96 QTIMLVGLQGSGKTTTAAKLARYFKK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF  173 (437)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHHH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence            47899999999999999999988852 222 45555554432 2334455566666544311 11112222222   222


Q ss_pred             ccCcEEEEEcCCCC
Q 037045           77 NDRSYVLFLDGVSS   90 (424)
Q Consensus        77 ~~~~~LlvlD~~~~   90 (424)
                      .+. -++|+|..-.
T Consensus       174 ~~~-DvVIIDTAGr  186 (437)
T PRK00771        174 KKA-DVIIVDTAGR  186 (437)
T ss_pred             hcC-CEEEEECCCc
Confidence            233 4688887643

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=96.75  E-value=0.0055  Score=58.70  Aligned_cols=86  Identities=16%  Similarity=0.298  Sum_probs=53.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcccc-------cccChhHH-----
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNA-------KELNNDLR-----   68 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~-----   68 (424)
                      ..++|.|+.|+|||||++.++...    ..+.++..-++.. .+..++.++++..-+...       ...+....     
T Consensus       163 qrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~  238 (444)
T PRK08972        163 QRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE  238 (444)
T ss_pred             CEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence            368999999999999999998644    2356666666664 455667776655422221       11111111     


Q ss_pred             -HHHHHHHh--ccCcEEEEEcCCCCc
Q 037045           69 -ADIISKEL--NDRSYVLFLDGVSSE   91 (424)
Q Consensus        69 -~~~l~~~l--~~~~~LlvlD~~~~~   91 (424)
                       .-.+.+++  +++++|+++|++-..
T Consensus       239 ~A~tiAEyfrd~G~~VLl~~DslTR~  264 (444)
T PRK08972        239 TATTIAEYFRDQGLNVLLLMDSLTRY  264 (444)
T ss_pred             HHHHHHHHHHHcCCCEEEEEcChHHH
Confidence             11233444  468999999998653

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=96.74  E-value=0.0049  Score=58.47  Aligned_cols=90  Identities=18%  Similarity=0.200  Sum_probs=50.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc----
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN----   77 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----   77 (424)
                      +++.|.|.+|+|||.||-.++.+...........+++.+... ...+.+.+................ ..+.+...    
T Consensus         2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l-~~~l~~~l~~~~~~~~~~~~~~~~-~~~i~~~~~~~~   79 (352)
T PF09848_consen    2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPL-RNKLREQLAKKYNPKLKKSDFRKP-TSFINNYSESDK   79 (352)
T ss_pred             eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchH-HHHHHHHHhhhcccchhhhhhhhh-HHHHhhcccccc
Confidence            578999999999999999999988323445556676666552 223333333332111111111111 11222221    


Q ss_pred             -cCcE-EEEEcCCCCcch
Q 037045           78 -DRSY-VLFLDGVSSEIN   93 (424)
Q Consensus        78 -~~~~-LlvlD~~~~~~~   93 (424)
                       ..++ ++|+|+++....
T Consensus        80 ~~~~~DviivDEAqrl~~   97 (352)
T PF09848_consen   80 EKNKYDVIIVDEAQRLRT   97 (352)
T ss_pred             cCCcCCEEEEehhHhhhh
Confidence             2334 999999887644

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.74  E-value=0.01  Score=50.04  Aligned_cols=116  Identities=18%  Similarity=0.214  Sum_probs=59.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhcc---C---CCC--ceEEEEEeccCCCHHHHHHHHHHHhcccc-------cccCh-
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGE---S---RRF--DIIFWENINTDGNIRDIQEIILERLKVNA-------KELNN-   65 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~---~---~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~-   65 (424)
                      .+++|.|+.|+|||||.+.+..+...   .   ..+  ..+.|+.  +        .+.+..++...       ...+. 
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LSgG   91 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLSGG   91 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCCHH
Confidence            47899999999999999988632110   0   011  1133321  1        34555555432       11111 


Q ss_pred             -hHHHHHHHHHhccC--cEEEEEcCCCCcchhhhh-----ccC-CCCCCcEEEEEecchhhhcccCceEEec
Q 037045           66 -DLRADIISKELNDR--SYVLFLDGVSSEINFKEI-----GMH-DDHGRGKVVFACRSREFCWQADGVIHVQ  128 (424)
Q Consensus        66 -~~~~~~l~~~l~~~--~~LlvlD~~~~~~~~~~~-----~~~-~~~~~~~iiittr~~~~~~~~~~~~~l~  128 (424)
                       .+.....+ .+-..  .=++++|+.-...+....     .+. ....+..||++|.+.......+..+.++
T Consensus        92 q~qrl~lar-al~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~  162 (176)
T cd03238          92 ELQRVKLAS-ELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFG  162 (176)
T ss_pred             HHHHHHHHH-HHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEC
Confidence             22223333 33345  668888997654332211     011 1224667888888876554444455543

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=96.74  E-value=0.0041  Score=53.52  Aligned_cols=25  Identities=40%  Similarity=0.531  Sum_probs=23.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|.+|+||||+|+.+++...
T Consensus         9 iiIgIaG~SgSGKTTva~~l~~~~~   33 (218)
T COG0572           9 IIIGIAGGSGSGKTTVAKELSEQLG   33 (218)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            4899999999999999999999994

>TIGR00959 ffh signal recognition particle protein

Probab=96.72  E-value=0.0077  Score=58.10  Aligned_cols=39  Identities=21%  Similarity=0.183  Sum_probs=27.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      .++.+.|+.|+||||.+.+++.....+. -..+.-+++..
T Consensus       100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~-g~kV~lV~~D~  138 (428)
T TIGR00959       100 TVILMVGLQGSGKTTTCGKLAYYLKKKQ-GKKVLLVACDL  138 (428)
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHhC-CCeEEEEeccc
Confidence            4789999999999999999998863112 22355555544

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=96.72  E-value=0.0081  Score=57.01  Aligned_cols=81  Identities=19%  Similarity=0.296  Sum_probs=48.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      .++.|.|.+|+|||||+.+++....  ..-..++|++...  +..++.. -+..++...      ...+.++    +.+.
T Consensus        83 slvLI~G~pG~GKStLllq~a~~~a--~~g~~VlYvs~EE--s~~qi~~-Ra~rlg~~~~~l~l~~e~~le~----I~~~  153 (372)
T cd01121          83 SVILIGGDPGIGKSTLLLQVAARLA--KRGGKVLYVSGEE--SPEQIKL-RADRLGISTENLYLLAETNLED----ILAS  153 (372)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCc--CHHHHHH-HHHHcCCCcccEEEEccCcHHH----HHHH
Confidence            4788999999999999999998773  3335688887543  3333322 234444322      1222222    2223


Q ss_pred             hc-cCcEEEEEcCCCCc
Q 037045           76 LN-DRSYVLFLDGVSSE   91 (424)
Q Consensus        76 l~-~~~~LlvlD~~~~~   91 (424)
                      +. .+.-++|+|.++..
T Consensus       154 i~~~~~~lVVIDSIq~l  170 (372)
T cd01121         154 IEELKPDLVIIDSIQTV  170 (372)
T ss_pred             HHhcCCcEEEEcchHHh
Confidence            32 34568888887554

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PTZ00301 uridine kinase; Provisional

Probab=96.72  E-value=0.0014  Score=56.85  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|++|+||||||+.+.+..
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l   27 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSEL   27 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHH
Confidence            489999999999999999998776

>PRK04328 hypothetical protein; Provisional

Probab=96.72  E-value=0.0071  Score=54.29  Aligned_cols=38  Identities=11%  Similarity=0.104  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      +++.|.|++|+|||+|+.+++...  -..-..++|++...
T Consensus        24 s~ili~G~pGsGKT~l~~~fl~~~--~~~ge~~lyis~ee   61 (249)
T PRK04328         24 NVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGVYVALEE   61 (249)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEEeeC
Confidence            468899999999999999988775  23346688888655

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=96.70  E-value=0.012  Score=55.25  Aligned_cols=86  Identities=21%  Similarity=0.233  Sum_probs=50.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-CHHHHHHHHHHHhcccc-cccChhHHHHHHHHHhccC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-NIRDIQEIILERLKVNA-KELNNDLRADIISKELNDR   79 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~~   79 (424)
                      ++|+++||.|+||||-..+++.++.-...-..+..|+...+. ....-++.-+.-++.+. ...+..+....+ ..+++.
T Consensus       204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai-~~l~~~  282 (407)
T COG1419         204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAI-EALRDC  282 (407)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHH-HHhhcC
Confidence            689999999999999888888877312333457777776654 33344455556666665 333333333333 233344


Q ss_pred             cEEEEEcCCC
Q 037045           80 SYVLFLDGVS   89 (424)
Q Consensus        80 ~~LlvlD~~~   89 (424)
                      + ++.+|-+.
T Consensus       283 d-~ILVDTaG  291 (407)
T COG1419         283 D-VILVDTAG  291 (407)
T ss_pred             C-EEEEeCCC
Confidence            3 34456554

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.68  E-value=0.0015  Score=53.11  Aligned_cols=23  Identities=35%  Similarity=0.637  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|.+.|++|+||||+|+.+....
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~   23 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRL   23 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHC
Confidence            68899999999999999999877

...

>PRK09280 F0F1 ATP synthase subunit beta; Validated

Probab=96.68  E-value=0.0095  Score=57.58  Aligned_cols=88  Identities=17%  Similarity=0.262  Sum_probs=56.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcccc-------cccChhH------H
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNA-------KELNNDL------R   68 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~------~   68 (424)
                      -++|.|.+|+|||||+.+++..... ++-+.++++-++.. ....++.+++...-....       ...+...      .
T Consensus       146 R~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~  224 (463)
T PRK09280        146 KIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALT  224 (463)
T ss_pred             EEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence            4789999999999999999887742 22356777777664 456677777765422211       1111111      1


Q ss_pred             HHHHHHHh---ccCcEEEEEcCCCCc
Q 037045           69 ADIISKEL---NDRSYVLFLDGVSSE   91 (424)
Q Consensus        69 ~~~l~~~l---~~~~~LlvlD~~~~~   91 (424)
                      .-.+.+.+   +++++||++|++...
T Consensus       225 a~tiAEyfrd~~G~~VLll~DslTR~  250 (463)
T PRK09280        225 GLTMAEYFRDVEGQDVLLFIDNIFRF  250 (463)
T ss_pred             HHHHHHHHHHhcCCceEEEecchHHH
Confidence            22344555   468999999998653

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.68  E-value=0.013  Score=56.23  Aligned_cols=59  Identities=22%  Similarity=0.145  Sum_probs=34.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcccc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNA   60 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~   60 (424)
                      .+++++|+.|+||||++.+++...........+..+..... ....+-+....+.++.+.
T Consensus       192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~  251 (420)
T PRK14721        192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV  251 (420)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence            47999999999999999999876532222333444443332 122233444445544443

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.68  E-value=0.0097  Score=57.62  Aligned_cols=86  Identities=16%  Similarity=0.173  Sum_probs=48.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC-HHHHHHHHHHHhcccc-cccChhHHHHHHHHHhccC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN-IRDIQEIILERLKVNA-KELNNDLRADIISKELNDR   79 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~~   79 (424)
                      +++++.|++|+||||++.+++........-..+..++...... ...-++.-...++.+. ...+..+....+.+ +. .
T Consensus       222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~-~  299 (424)
T PRK05703        222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR-D  299 (424)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-C
Confidence            4789999999999999999988773112234567777655421 1122223333344333 22233333443432 22 2


Q ss_pred             cEEEEEcCCC
Q 037045           80 SYVLFLDGVS   89 (424)
Q Consensus        80 ~~LlvlD~~~   89 (424)
                      .=++++|...
T Consensus       300 ~DlVlIDt~G  309 (424)
T PRK05703        300 CDVILIDTAG  309 (424)
T ss_pred             CCEEEEeCCC
Confidence            4578889653

>PRK00889 adenylylsulfate kinase; Provisional

Probab=96.67  E-value=0.0044  Score=52.38  Aligned_cols=25  Identities=32%  Similarity=0.409  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|.+|+||||+|+.++....
T Consensus         5 ~~i~~~G~~GsGKST~a~~la~~l~   29 (175)
T PRK00889          5 VTVWFTGLSGAGKTTIARALAEKLR   29 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999874

>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.66  E-value=0.097  Score=48.57  Aligned_cols=48  Identities=27%  Similarity=0.295  Sum_probs=36.5

Q ss_pred             eEEecCCCHHHHHHHHHHHhcccCCCC-ccHHHHHHHHHHhcCCchHHH
Q 037045          124 VIHVQQLCQREAKKLFWEVVGVHLKKY-PDIELVADSIVKECGGMPYML  171 (424)
Q Consensus       124 ~~~l~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~I~~~~~g~Plai  171 (424)
                      .+++++++++|+..++..+........ ...+...+++.-..+|+|.-+
T Consensus       258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el  306 (309)
T PF10236_consen  258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL  306 (309)
T ss_pred             eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence            789999999999999998887662222 444556677777789999654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).

>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.66  E-value=0.0071  Score=52.62  Aligned_cols=84  Identities=20%  Similarity=0.388  Sum_probs=53.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHH--hcccc-----cccChhHH------
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILER--LKVNA-----KELNNDLR------   68 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~--l~~~~-----~~~~~~~~------   68 (424)
                      -++|.|.+|+|||+|+.++++..    .-+.++++-++.. .+..++.+++...  +....     ...+....      
T Consensus        17 r~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~   92 (215)
T PF00006_consen   17 RIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYT   92 (215)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHH
T ss_pred             EEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhcc
Confidence            47899999999999999999987    2445588888764 5677777777544  11111     11111111      


Q ss_pred             HHHHHHHh--ccCcEEEEEcCCCC
Q 037045           69 ADIISKEL--NDRSYVLFLDGVSS   90 (424)
Q Consensus        69 ~~~l~~~l--~~~~~LlvlD~~~~   90 (424)
                      .-.+-+.+  +++++|+++||+..
T Consensus        93 a~t~AEyfrd~G~dVlli~Dsltr  116 (215)
T PF00006_consen   93 ALTIAEYFRDQGKDVLLIIDSLTR  116 (215)
T ss_dssp             HHHHHHHHHHTTSEEEEEEETHHH
T ss_pred             chhhhHHHhhcCCceeehhhhhHH
Confidence            11222333  57899999999754

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.65  E-value=0.0019  Score=56.98  Aligned_cols=22  Identities=41%  Similarity=0.593  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.|.|++|+||||+|+.+++..
T Consensus         9 Ivl~G~PGsGK~T~a~~La~~~   30 (229)
T PTZ00088          9 IVLFGAPGVGKGTFAEILSKKE   30 (229)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8899999999999999999987

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=96.64  E-value=0.0099  Score=49.75  Aligned_cols=81  Identities=15%  Similarity=0.125  Sum_probs=47.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhcc--Cc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELND--RS   80 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~--~~   80 (424)
                      ++.|.|.+|+|||++|.+++...     ...++|+.-....+. ++.+.|..............+....+.+.+..  +.
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~   74 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPG   74 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence            46899999999999999998752     235677766665543 34444444322223222222223344444422  23


Q ss_pred             EEEEEcCCC
Q 037045           81 YVLFLDGVS   89 (424)
Q Consensus        81 ~LlvlD~~~   89 (424)
                      -.+++|.+.
T Consensus        75 ~~VLIDclt   83 (169)
T cd00544          75 DVVLIDCLT   83 (169)
T ss_pred             CEEEEEcHh
Confidence            379999864

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>CHL00206 ycf2 Ycf2; Provisional

Probab=96.63  E-value=0.076  Score=59.28  Aligned_cols=24  Identities=21%  Similarity=0.421  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      =|.++|++|+|||.||+.++.+..
T Consensus      1632 GILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206       1632 GILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred             ceEEECCCCCCHHHHHHHHHHhcC
Confidence            367999999999999999999884

>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]

Probab=96.63  E-value=0.012  Score=62.35  Aligned_cols=191  Identities=18%  Similarity=0.222  Sum_probs=106.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCC--CceEEEEEeccCCCHH------HHHHHHHHHhcccccccChhHHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRR--FDIIFWENINTDGNIR------DIQEIILERLKVNAKELNNDLRADIISK   74 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~------~~~~~i~~~l~~~~~~~~~~~~~~~l~~   74 (424)
                      -+.|.|.+|+||||+...++.....+..  -+..+++.+.......      .+..-+...+..+.   ...+......+
T Consensus       224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~---~~~~~~~~~~e  300 (824)
T COG5635         224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG---IAKQLIEAHQE  300 (824)
T ss_pred             heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC---CcchhhHHHHH
Confidence            3689999999999999999988753221  2345555544211111      22222222222222   11122222256


Q ss_pred             HhccCcEEEEEcCCCCcch------hhhh-ccCCCCCCcEEEEEecchhhhc--ccCceEEecCCCHHHHHHHHH-----
Q 037045           75 ELNDRSYVLFLDGVSSEIN------FKEI-GMHDDHGRGKVVFACRSREFCW--QADGVIHVQQLCQREAKKLFW-----  140 (424)
Q Consensus        75 ~l~~~~~LlvlD~~~~~~~------~~~~-~~~~~~~~~~iiittr~~~~~~--~~~~~~~l~~l~~~~~~~l~~-----  140 (424)
                      .++..++++.+|++++...      ...+ .+.+..+.+++|+|+|......  .....+++..+.++.-..+..     
T Consensus       301 ~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~~  380 (824)
T COG5635         301 LLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWLD  380 (824)
T ss_pred             HHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHHH
Confidence            7788999999999988642      2222 2336777999999998777666  556667777777666554433     


Q ss_pred             HHhccc-CCCCcc---H-HH---HHHHHHHhcCCchHHHHHHHHHHhCC-----cchHHHHHHHHHhhh
Q 037045          141 EVVGVH-LKKYPD---I-EL---VADSIVKECGGMPYMLKLIGKELANQ-----SEVAIWRATADELRL  196 (424)
Q Consensus       141 ~~~~~~-~~~~~~---~-~~---~~~~I~~~~~g~Plai~~~a~~l~~~-----~~~~~~~~~~~~l~~  196 (424)
                      ...... ......   . ..   ....-.+.....|+.|.+.+-.-...     ...+.++..++.+..
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~  449 (824)
T COG5635         381 AFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG  449 (824)
T ss_pred             HHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence            111111 101111   0 00   01122233478899999988554421     345566666655544

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.017  Score=49.87  Aligned_cols=48  Identities=13%  Similarity=0.055  Sum_probs=32.4

Q ss_pred             HHHHhccCcEEEEEcCCCCcchhhhhccC------CCCCCcEEEEEecchhhhc
Q 037045           72 ISKELNDRSYVLFLDGVSSEINFKEIGMH------DDHGRGKVVFACRSREFCW  119 (424)
Q Consensus        72 l~~~l~~~~~LlvlD~~~~~~~~~~~~~~------~~~~~~~iiittr~~~~~~  119 (424)
                      +.+.+--++-+.|||..++..|++.+...      -...++-+++.|....+..
T Consensus       155 ilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~  208 (251)
T COG0396         155 ILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLD  208 (251)
T ss_pred             HHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHh
Confidence            33334447889999999998887777221      3345667777777777665

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.62  E-value=0.011  Score=57.59  Aligned_cols=86  Identities=17%  Similarity=0.153  Sum_probs=47.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhccccc-ccChhHHHHHHHHHhccC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNAK-ELNNDLRADIISKELNDR   79 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~~~   79 (424)
                      +|++++|+.|+||||++.+++.....+.....+..+..... ....+-++...+.++.... ..+..+....+ ..++++
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d~  335 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRNK  335 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccCC
Confidence            48999999999999999999987732222224555554442 2223334444454444331 11222222222 233333


Q ss_pred             cEEEEEcCCC
Q 037045           80 SYVLFLDGVS   89 (424)
Q Consensus        80 ~~LlvlD~~~   89 (424)
                       -.+++|...
T Consensus       336 -d~VLIDTaG  344 (484)
T PRK06995        336 -HIVLIDTIG  344 (484)
T ss_pred             -CeEEeCCCC
Confidence             477788765

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.62  E-value=0.0072  Score=57.47  Aligned_cols=88  Identities=16%  Similarity=0.134  Sum_probs=53.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccC--CCCceEEEEEeccCCC-HHHHHHHHHHHhcccc-cccChhHHHHHHHHHhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGES--RRFDIIFWENINTDGN-IRDIQEIILERLKVNA-KELNNDLRADIISKELN   77 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~   77 (424)
                      ++|.++|+.|+||||.+.+++......  .+-..+..+++..... ...-++...+.++.+. ...+.++....+.+ + 
T Consensus       175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~-~-  252 (388)
T PRK12723        175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ-S-  252 (388)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-h-
Confidence            579999999999999999999877422  1223466666665432 2223555566566544 22333333333333 2 


Q ss_pred             cCcEEEEEcCCCCc
Q 037045           78 DRSYVLFLDGVSSE   91 (424)
Q Consensus        78 ~~~~LlvlD~~~~~   91 (424)
                      ...-++++|.+...
T Consensus       253 ~~~DlVLIDTaGr~  266 (388)
T PRK12723        253 KDFDLVLVDTIGKS  266 (388)
T ss_pred             CCCCEEEEcCCCCC
Confidence            33458899987543

>PRK06762 hypothetical protein; Provisional

Probab=96.62  E-value=0.0019  Score=54.04  Aligned_cols=24  Identities=42%  Similarity=0.566  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|.|.|++|+||||+|+.+++..
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999999887

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.62  E-value=0.018  Score=51.07  Aligned_cols=38  Identities=18%  Similarity=0.140  Sum_probs=29.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      .++.|.|++|+|||+++.+++....  ..-..++|++...
T Consensus        21 ~~~~i~G~~G~GKT~l~~~~~~~~~--~~g~~~~~is~e~   58 (229)
T TIGR03881        21 FFVAVTGEPGTGKTIFCLHFAYKGL--RDGDPVIYVTTEE   58 (229)
T ss_pred             eEEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence            4689999999999999999876542  2345688888643

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=96.61  E-value=0.0073  Score=58.14  Aligned_cols=87  Identities=20%  Similarity=0.223  Sum_probs=49.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhH------HH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDL------RA   69 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~------~~   69 (424)
                      ..++|.|++|+|||||++.++....   ...++++..--...++..+.+..+.......      ...+...      ..
T Consensus       166 qri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a  242 (450)
T PRK06002        166 QRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA  242 (450)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence            3689999999999999998887542   2224455443344555555554444331111      1111111      11


Q ss_pred             HHHHHHh--ccCcEEEEEcCCCCc
Q 037045           70 DIISKEL--NDRSYVLFLDGVSSE   91 (424)
Q Consensus        70 ~~l~~~l--~~~~~LlvlD~~~~~   91 (424)
                      -.+.+++  +++++|+++|++-..
T Consensus       243 ~~iAEyfrd~G~~Vll~~DslTr~  266 (450)
T PRK06002        243 TAIAEYFRDRGENVLLIVDSVTRF  266 (450)
T ss_pred             HHHHHHHHHcCCCEEEeccchHHH
Confidence            2233333  368999999998653

>PRK04040 adenylate kinase; Provisional

Probab=96.61  E-value=0.002  Score=55.11  Aligned_cols=25  Identities=36%  Similarity=0.582  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +.+|+|+|++|+||||+++.+++..
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l   26 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKL   26 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence            3689999999999999999999987

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]

Probab=96.60  E-value=0.056  Score=49.37  Aligned_cols=139  Identities=12%  Similarity=0.113  Sum_probs=79.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHH-HHHHHHHHHhcccc-----cccChhHHHHHHHHHh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIR-DIQEIILERLKVNA-----KELNNDLRADIISKEL   76 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~-----~~~~~~~~~~~l~~~l   76 (424)
                      -+.|.||.|+|||+|......+.  +..-+..+-|........+ -.++.|..++..+-     ...+..+....+-+.|
T Consensus        51 sviiigprgsgkT~li~~~Ls~~--q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L  128 (408)
T KOG2228|consen   51 SVIIIGPRGSGKTILIDTRLSDI--QENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEAL  128 (408)
T ss_pred             ceEEEccCCCCceEeeHHHHhhH--HhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHH
Confidence            46799999999999999998884  3333444555555543322 24455555554332     3444455555555555


Q ss_pred             cc------CcEEEEEcCCCCcch-------hhhhccC--CCCCCcEEEEEecchhhhc--------ccCc-eEEecCCCH
Q 037045           77 ND------RSYVLFLDGVSSEIN-------FKEIGMH--DDHGRGKVVFACRSREFCW--------QADG-VIHVQQLCQ  132 (424)
Q Consensus        77 ~~------~~~LlvlD~~~~~~~-------~~~~~~~--~~~~~~~iiittr~~~~~~--------~~~~-~~~l~~l~~  132 (424)
                      +.      .++++|+|+++....       ..-+.+.  ...+=|-|-+|||......        .... ++-++.+.-
T Consensus       129 ~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l  208 (408)
T KOG2228|consen  129 KKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPL  208 (408)
T ss_pred             hcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCCh
Confidence            42      368999999876421       1111222  2333445568888644433        2333 444455666


Q ss_pred             HHHHHHHHHHh
Q 037045          133 REAKKLFWEVV  143 (424)
Q Consensus       133 ~~~~~l~~~~~  143 (424)
                      ++-++++++..
T Consensus       209 ~~yv~l~r~ll  219 (408)
T KOG2228|consen  209 GDYVDLYRKLL  219 (408)
T ss_pred             HHHHHHHHHHh
Confidence            77777776665

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=96.60  E-value=0.024  Score=53.12  Aligned_cols=114  Identities=14%  Similarity=0.123  Sum_probs=63.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCC-------------------CCceEEEEEeccCCC---HHHHHHHHHHHhccccc
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESR-------------------RFDIIFWENINTDGN---IRDIQEIILERLKVNAK   61 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~---~~~~~~~i~~~l~~~~~   61 (424)
                      +.++|++|+||||+|..+++...-..                   ....+..+.-+....   ..+..+++.........
T Consensus        27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~  106 (325)
T COG0470          27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPL  106 (325)
T ss_pred             eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCCC
Confidence            67899999999999999999874211                   112233444333322   23333333333221110


Q ss_pred             ccChhHHHHHHHHHhccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecc-hhhhc---ccCceEEecCCCH
Q 037045           62 ELNNDLRADIISKELNDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRS-REFCW---QADGVIHVQQLCQ  132 (424)
Q Consensus        62 ~~~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~-~~~~~---~~~~~~~l~~l~~  132 (424)
                                     .++.-++|+|+++....  -..+  .+-.....+.+|++|.. ..+.+   +....+++.+.+.
T Consensus       107 ---------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~  170 (325)
T COG0470         107 ---------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKPPSR  170 (325)
T ss_pred             ---------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCCchH
Confidence                           24567999999998643  2222  11234456667766663 33333   6677777776333

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=96.59  E-value=0.0048  Score=52.47  Aligned_cols=48  Identities=27%  Similarity=0.405  Sum_probs=33.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILE   54 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~   54 (424)
                      .+|+|-|+-|+||||||+.+++...    + .+++-.+..+.-++.+.++..+
T Consensus         5 ~~IvI~G~IG~GKSTLa~~La~~l~----~-~~~~E~vednp~L~~FY~d~~~   52 (216)
T COG1428           5 MVIVIEGMIGAGKSTLAQALAEHLG----F-KVFYELVEDNPFLDLFYEDPER   52 (216)
T ss_pred             cEEEEecccccCHHHHHHHHHHHhC----C-ceeeecccCChHHHHHHHhHHH
Confidence            4899999999999999999999883    2 2344445555445555554433

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=96.59  E-value=0.1  Score=47.91  Aligned_cols=149  Identities=8%  Similarity=0.021  Sum_probs=84.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh--------ccCCCCceEEEEEe-ccCCCHHHHHHHHHHHhcccccccChhHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI--------GESRRFDIIFWENI-NTDGNIRDIQEIILERLKVNAKELNNDLRADIIS   73 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~--------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~   73 (424)
                      +..++|..|+||+++|..+++..        ....+.+-+.+++. +.....+++. ++.+.+....             
T Consensus        20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~-------------   85 (299)
T PRK07132         20 SFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS-------------   85 (299)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC-------------
Confidence            45689999999999999999886        11223323444432 2223333332 2333222110             


Q ss_pred             HHhccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEE-Eecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcc
Q 037045           74 KELNDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVF-ACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGV  145 (424)
Q Consensus        74 ~~l~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iii-ttr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~  145 (424)
                       .-.+.+=++|+|+++....  ...+  .+-....++.+|+ |++...+.+   +....+++.++++++..+.+... + 
T Consensus        86 -~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~-~-  162 (299)
T PRK07132         86 -FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK-N-  162 (299)
T ss_pred             -cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc-C-
Confidence             0014667889999887643  2222  1112334455555 444444443   77889999999999988777653 1 


Q ss_pred             cCCCCccHHHHHHHHHHhcCCchHHHHHH
Q 037045          146 HLKKYPDIELVADSIVKECGGMPYMLKLI  174 (424)
Q Consensus       146 ~~~~~~~~~~~~~~I~~~~~g~Plai~~~  174 (424)
                            ..++.++.++...+|.-.|+..+
T Consensus       163 ------~~~~~a~~~a~~~~~~~~a~~~~  185 (299)
T PRK07132        163 ------KEKEYNWFYAYIFSNFEQAEKYI  185 (299)
T ss_pred             ------CChhHHHHHHHHcCCHHHHHHHH
Confidence                  11234666777777644555553

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.039  Score=49.38  Aligned_cols=144  Identities=15%  Similarity=0.204  Sum_probs=74.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc-cCc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN-DRS   80 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~~   80 (424)
                      +-|.++|++|+||+.||+.|+...  ...     |++++...    +.   -..++.+      +.+.+.+.+.-+ .++
T Consensus       167 rgiLLyGPPGTGKSYLAKAVATEA--nST-----FFSvSSSD----Lv---SKWmGES------EkLVknLFemARe~kP  226 (439)
T KOG0739|consen  167 RGILLYGPPGTGKSYLAKAVATEA--NST-----FFSVSSSD----LV---SKWMGES------EKLVKNLFEMARENKP  226 (439)
T ss_pred             eeEEEeCCCCCcHHHHHHHHHhhc--CCc-----eEEeehHH----HH---HHHhccH------HHHHHHHHHHHHhcCC
Confidence            568899999999999999999987  332     33444431    11   1112211      222333333333 478


Q ss_pred             EEEEEcCCCCc--------c-hh----hhh-----ccCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHH-
Q 037045           81 YVLFLDGVSSE--------I-NF----KEI-----GMHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAK-  136 (424)
Q Consensus        81 ~LlvlD~~~~~--------~-~~----~~~-----~~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~-  136 (424)
                      -+|.+|.++..        + ..    .++     +.-....|.-|+=.|.-.-+..     .....|.+ +|.+..|. 
T Consensus       227 SIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~  305 (439)
T KOG0739|consen  227 SIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARA  305 (439)
T ss_pred             cEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhh
Confidence            89999998753        0 11    111     1123333333443443221111     22333333 45555555 


Q ss_pred             HHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          137 KLFWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      .+|+-.++..  +....+...+++.+...|+.
T Consensus       306 ~MF~lhlG~t--p~~LT~~d~~eL~~kTeGyS  335 (439)
T KOG0739|consen  306 RMFKLHLGDT--PHVLTEQDFKELARKTEGYS  335 (439)
T ss_pred             hhheeccCCC--ccccchhhHHHHHhhcCCCC
Confidence            4454455443  34444556777888877764

>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta

Probab=96.58  E-value=0.0071  Score=58.27  Aligned_cols=88  Identities=15%  Similarity=0.233  Sum_probs=57.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhccc--c-----cccChhH------H
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVN--A-----KELNNDL------R   68 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~--~-----~~~~~~~------~   68 (424)
                      -++|.|.+|+|||+|+.++..... +.+-+.++|+-++.. ....++.+++...=...  .     ...+...      .
T Consensus       140 r~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~  218 (449)
T TIGR03305       140 KAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHT  218 (449)
T ss_pred             EEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHH
Confidence            578999999999999999988863 233477888888764 45666777765532111  1     1111111      1


Q ss_pred             HHHHHHHhc---cCcEEEEEcCCCCc
Q 037045           69 ADIISKELN---DRSYVLFLDGVSSE   91 (424)
Q Consensus        69 ~~~l~~~l~---~~~~LlvlD~~~~~   91 (424)
                      .-.+.+.++   ++++|+++|++...
T Consensus       219 a~tiAEyfrd~~G~~VLl~~DslTR~  244 (449)
T TIGR03305       219 ALTMAEYFRDDEKQDVLLLIDNIFRF  244 (449)
T ss_pred             HHHHHHHHHHhcCCceEEEecChHHH
Confidence            224445554   47999999998653

A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.57  E-value=0.009  Score=48.69  Aligned_cols=99  Identities=18%  Similarity=0.286  Sum_probs=52.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHH-HHHHHHHhccCc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLR-ADIISKELNDRS   80 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~l~~~l~~~~   80 (424)
                      .+++|.|+.|.|||||++.++...+   ...+.+|++-..             .++.- ...+..+. .-.+...+-.++
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~p   89 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLENP   89 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcCC
Confidence            3789999999999999999988663   234444443110             00000 00111111 122333444566


Q ss_pred             EEEEEcCCCCcchhhhh-----ccCCCCCCcEEEEEecchhhhc
Q 037045           81 YVLFLDGVSSEINFKEI-----GMHDDHGRGKVVFACRSREFCW  119 (424)
Q Consensus        81 ~LlvlD~~~~~~~~~~~-----~~~~~~~~~~iiittr~~~~~~  119 (424)
                      -++++|+.....|....     .+...  +..||++|.......
T Consensus        90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~  131 (144)
T cd03221          90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD  131 (144)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence            78889997654332211     01111  356788887765543

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.56  E-value=0.0022  Score=54.86  Aligned_cols=25  Identities=36%  Similarity=0.355  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +++|+|.|++|+||||+++.+++..
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999876

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.55  E-value=0.019  Score=48.07  Aligned_cols=24  Identities=29%  Similarity=0.541  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|.|||||++.++-..
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          28 DRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999999865

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR01039 atpD ATP synthase, F1 beta subunit

Probab=96.54  E-value=0.0096  Score=57.36  Aligned_cols=88  Identities=17%  Similarity=0.260  Sum_probs=56.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcccc-------cccChhH------H
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNA-------KELNNDL------R   68 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~------~   68 (424)
                      -++|.|.+|+|||||+.+++.... .++-+.++++-++.. ....++.+++...=....       ...+...      .
T Consensus       145 r~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~  223 (461)
T TIGR01039       145 KIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALT  223 (461)
T ss_pred             EEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence            478999999999999999988764 223356788877664 556777777754321111       1111111      1


Q ss_pred             HHHHHHHhc---cCcEEEEEcCCCCc
Q 037045           69 ADIISKELN---DRSYVLFLDGVSSE   91 (424)
Q Consensus        69 ~~~l~~~l~---~~~~LlvlD~~~~~   91 (424)
                      .-.+.++++   ++++|+++|++-..
T Consensus       224 a~tiAEyfrd~~G~~VLll~DslTR~  249 (461)
T TIGR01039       224 GLTMAEYFRDEQGQDVLLFIDNIFRF  249 (461)
T ss_pred             HHHHHHHHHHhcCCeeEEEecchhHH
Confidence            224455553   57999999998653

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.53  E-value=0.02  Score=59.47  Aligned_cols=80  Identities=16%  Similarity=0.238  Sum_probs=44.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhcc-Cc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELND-RS   80 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~~   80 (424)
                      ..+.++|++|+|||.+|+.++...  ..   ..+.++++...+..    .+..-++.+......++ ...+.+.++. ..
T Consensus       489 ~~~Lf~GP~GvGKT~lAk~LA~~l--~~---~~i~id~se~~~~~----~~~~LiG~~~gyvg~~~-~g~L~~~v~~~p~  558 (758)
T PRK11034        489 GSFLFAGPTGVGKTEVTVQLSKAL--GI---ELLRFDMSEYMERH----TVSRLIGAPPGYVGFDQ-GGLLTDAVIKHPH  558 (758)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh--CC---CcEEeechhhcccc----cHHHHcCCCCCcccccc-cchHHHHHHhCCC
Confidence            357889999999999999999887  22   23455655443211    12222232221111111 1123333333 45


Q ss_pred             EEEEEcCCCCc
Q 037045           81 YVLFLDGVSSE   91 (424)
Q Consensus        81 ~LlvlD~~~~~   91 (424)
                      .+++||+++..
T Consensus       559 sVlllDEieka  569 (758)
T PRK11034        559 AVLLLDEIEKA  569 (758)
T ss_pred             cEEEeccHhhh
Confidence            69999999875

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.53  E-value=0.0023  Score=55.91  Aligned_cols=24  Identities=33%  Similarity=0.398  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|++|+|||||++.++...
T Consensus         7 ~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          7 IIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999999987

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.52  E-value=0.0093  Score=56.83  Aligned_cols=82  Identities=15%  Similarity=0.090  Sum_probs=43.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC-HHHHHHHHHHHhcccccccChhHHHHHHHHHhccC-
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN-IRDIQEIILERLKVNAKELNNDLRADIISKELNDR-   79 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-   79 (424)
                      .++++.|++|+||||++.+++........ ..+..++...... ..+.++..+..++.+..  ...+ ...+.+.+... 
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G-~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~--~~~~-~~~l~~~l~~~~  299 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMG-KSVSLYTTDNYRIAAIEQLKRYADTMGMPFY--PVKD-IKKFKETLARDG  299 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEecccchhhhHHHHHHHHHHhcCCCee--ehHH-HHHHHHHHHhCC
Confidence            47899999999999999999976521222 2344455443222 22333333444444321  1111 22333333323 


Q ss_pred             cEEEEEcC
Q 037045           80 SYVLFLDG   87 (424)
Q Consensus        80 ~~LlvlD~   87 (424)
                      .=++++|-
T Consensus       300 ~D~VLIDT  307 (432)
T PRK12724        300 SELILIDT  307 (432)
T ss_pred             CCEEEEeC
Confidence            33688994

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=96.52  E-value=0.0056  Score=52.79  Aligned_cols=104  Identities=15%  Similarity=0.234  Sum_probs=50.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-----
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-----   76 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-----   76 (424)
                      +++.|.|++|+||||+++.+.+......  ..++++. ........    +....+...     ......+....     
T Consensus        19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~a-pT~~Aa~~----L~~~~~~~a-----~Ti~~~l~~~~~~~~~   86 (196)
T PF13604_consen   19 RVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLA-PTNKAAKE----LREKTGIEA-----QTIHSFLYRIPNGDDE   86 (196)
T ss_dssp             SEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEE-SSHHHHHH----HHHHHTS-E-----EEHHHHTTEECCEECC
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEEC-CcHHHHHH----HHHhhCcch-----hhHHHHHhcCCccccc
Confidence            4788999999999999999988875322  2334433 22222222    333322111     00000000000     


Q ss_pred             ----ccCcEEEEEcCCCCcc--hhhhhccCCCCCCcEEEEEecchhh
Q 037045           77 ----NDRSYVLFLDGVSSEI--NFKEIGMHDDHGRGKVVFACRSREF  117 (424)
Q Consensus        77 ----~~~~~LlvlD~~~~~~--~~~~~~~~~~~~~~~iiittr~~~~  117 (424)
                          ..+.-++|+|++....  ++..+.......++++|+.--....
T Consensus        87 ~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD~~QL  133 (196)
T PF13604_consen   87 GRPELPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGDPNQL  133 (196)
T ss_dssp             SSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-TTSH
T ss_pred             ccccCCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECCcchh
Confidence                1234599999987654  4444411133367788876544443

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=96.51  E-value=0.016  Score=55.79  Aligned_cols=86  Identities=15%  Similarity=0.227  Sum_probs=52.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccc-------cccChhHH-----
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNA-------KELNNDLR-----   68 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~~-----   68 (424)
                      ..++|.|..|+|||||+++++....    .+.+++.-++. .....++.++.+..-+...       ...+....     
T Consensus       159 qri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~  234 (442)
T PRK08927        159 QRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAY  234 (442)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHH
Confidence            4689999999999999999998662    34555666655 3455566655544322111       11111111     


Q ss_pred             -HHHHHHHh--ccCcEEEEEcCCCCc
Q 037045           69 -ADIISKEL--NDRSYVLFLDGVSSE   91 (424)
Q Consensus        69 -~~~l~~~l--~~~~~LlvlD~~~~~   91 (424)
                       .-.+.+++  +++++|+++|++...
T Consensus       235 ~a~tiAEyfrd~G~~Vll~~DslTr~  260 (442)
T PRK08927        235 LTLAIAEYFRDQGKDVLCLMDSVTRF  260 (442)
T ss_pred             HHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence             12233444  468999999998653

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.51  E-value=0.021  Score=48.44  Aligned_cols=24  Identities=33%  Similarity=0.610  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||++.++-..
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          29 EKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccC
Confidence            378999999999999999998865

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK06547 hypothetical protein; Provisional

Probab=96.51  E-value=0.0026  Score=53.45  Aligned_cols=24  Identities=33%  Similarity=0.349  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|++|+||||+|+.+++..
T Consensus        16 ~~i~i~G~~GsGKTt~a~~l~~~~   39 (172)
T PRK06547         16 ITVLIDGRSGSGKTTLAGALAART   39 (172)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999999875

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=96.51  E-value=0.0039  Score=53.17  Aligned_cols=37  Identities=24%  Similarity=0.484  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEec
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENIN   40 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~   40 (424)
                      |++.|.|++|+|||||++++++..  ...|..++..+-.
T Consensus         3 r~ivl~Gpsg~GK~~l~~~L~~~~--~~~~~~~v~~TTR   39 (183)
T PF00625_consen    3 RPIVLVGPSGSGKSTLAKRLIQEF--PDKFGRVVSHTTR   39 (183)
T ss_dssp             SEEEEESSTTSSHHHHHHHHHHHS--TTTEEEEEEEESS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhc--ccccccceeeccc
Confidence            689999999999999999999988  5777655555443

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=96.49  E-value=0.019  Score=59.04  Aligned_cols=25  Identities=32%  Similarity=0.441  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      ..|+|+|.+|+|||||++-+..-..
T Consensus       500 e~vaIvG~SGsGKSTL~KLL~gly~  524 (709)
T COG2274         500 EKVAIVGRSGSGKSTLLKLLLGLYK  524 (709)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3699999999999999999987663

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=96.49  E-value=0.0066  Score=54.57  Aligned_cols=24  Identities=33%  Similarity=0.483  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +|.+.|.+|+||||+|+.+++...
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~   24 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLS   24 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999874

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK08149 ATP synthase SpaL; Validated

Probab=96.49  E-value=0.013  Score=56.30  Aligned_cols=86  Identities=19%  Similarity=0.340  Sum_probs=52.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccc-------cccChh------H
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNA-------KELNND------L   67 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~------~   67 (424)
                      ..++|.|++|+|||||++.++...    ..+.++...++. ..+...+.++.........       ...+..      .
T Consensus       152 q~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~  227 (428)
T PRK08149        152 QRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL  227 (428)
T ss_pred             CEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence            368999999999999999998754    234444444444 3456666666665433221       111111      1


Q ss_pred             HHHHHHHHh--ccCcEEEEEcCCCCc
Q 037045           68 RADIISKEL--NDRSYVLFLDGVSSE   91 (424)
Q Consensus        68 ~~~~l~~~l--~~~~~LlvlD~~~~~   91 (424)
                      ....+.+.+  +++++||++|++...
T Consensus       228 ~a~tiAE~fr~~G~~Vll~~DslTr~  253 (428)
T PRK08149        228 VATTVAEYFRDQGKRVVLFIDSMTRY  253 (428)
T ss_pred             HHHHHHHHHHHcCCCEEEEccchHHH
Confidence            122333334  468999999998653

>PRK06696 uridine kinase; Validated

Probab=96.49  E-value=0.0024  Score=56.32  Aligned_cols=25  Identities=32%  Similarity=0.409  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|.+|+||||+|+.+++...
T Consensus        23 ~iI~I~G~sgsGKSTlA~~L~~~l~   47 (223)
T PRK06696         23 LRVAIDGITASGKTTFADELAEEIK   47 (223)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4899999999999999999999883

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.018  Score=53.93  Aligned_cols=81  Identities=17%  Similarity=0.324  Sum_probs=53.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      ++|.|-|.+|+|||||.-+++.+..  .+- .++||+--.  ++.++. --+..++.+.      .+.+.++....+.+ 
T Consensus        94 s~iLIgGdPGIGKSTLLLQva~~lA--~~~-~vLYVsGEE--S~~Qik-lRA~RL~~~~~~l~l~aEt~~e~I~~~l~~-  166 (456)
T COG1066          94 SVILIGGDPGIGKSTLLLQVAARLA--KRG-KVLYVSGEE--SLQQIK-LRADRLGLPTNNLYLLAETNLEDIIAELEQ-  166 (456)
T ss_pred             cEEEEccCCCCCHHHHHHHHHHHHH--hcC-cEEEEeCCc--CHHHHH-HHHHHhCCCccceEEehhcCHHHHHHHHHh-
Confidence            4788999999999999999999984  233 788876433  333322 2244454322      44555544444443 


Q ss_pred             hccCcEEEEEcCCCCc
Q 037045           76 LNDRSYVLFLDGVSSE   91 (424)
Q Consensus        76 l~~~~~LlvlD~~~~~   91 (424)
                        .+.-++|+|-++..
T Consensus       167 --~~p~lvVIDSIQT~  180 (456)
T COG1066         167 --EKPDLVVIDSIQTL  180 (456)
T ss_pred             --cCCCEEEEecccee
Confidence              56789999998875

>PRK05973 replicative DNA helicase; Provisional

Probab=96.48  E-value=0.019  Score=50.74  Aligned_cols=46  Identities=13%  Similarity=0.065  Sum_probs=32.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEI   51 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~   51 (424)
                      .++.|.|.+|+|||+++.+++....  ..-..++|++....  ..++...
T Consensus        65 sl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes--~~~i~~R  110 (237)
T PRK05973         65 DLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYT--EQDVRDR  110 (237)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCC--HHHHHHH
Confidence            3688999999999999999988763  23345777765543  3444443

>PRK11823 DNA repair protein RadA; Provisional

Probab=96.48  E-value=0.013  Score=57.17  Aligned_cols=81  Identities=17%  Similarity=0.289  Sum_probs=49.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      +++.|.|.+|+|||||+.+++....  ..-..++|++...  +..++... ++.++...      ...+.++    +.+.
T Consensus        81 s~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~----i~~~  151 (446)
T PRK11823         81 SVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEA----ILAT  151 (446)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHH----HHHH
Confidence            4788999999999999999998773  2334578887543  33343322 44444322      1222232    3333


Q ss_pred             hc-cCcEEEEEcCCCCc
Q 037045           76 LN-DRSYVLFLDGVSSE   91 (424)
Q Consensus        76 l~-~~~~LlvlD~~~~~   91 (424)
                      ++ .+.-++|+|.+...
T Consensus       152 i~~~~~~lVVIDSIq~l  168 (446)
T PRK11823        152 IEEEKPDLVVIDSIQTM  168 (446)
T ss_pred             HHhhCCCEEEEechhhh
Confidence            32 24558999987643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.46  E-value=0.0018  Score=56.67  Aligned_cols=103  Identities=21%  Similarity=0.222  Sum_probs=66.6

Q ss_pred             ccCCCcEEEccCCCCCcCChhhhcccccceeeeccccc--cc-ccCChhhhccCCCCEEEecCCcCc---ccchhhhcCC
Q 037045          307 YMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCS--LL-LQLPAEIGRLQKLEILDVSHTKVQ---CLPSEIGQLI  380 (424)
Q Consensus       307 ~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~--~~-~~lp~~~~~l~~L~~L~l~~~~i~---~lp~~i~~l~  380 (424)
                      .+..|+.+++.+..+..+ .++-.|++|++|.+  +.|  ++ ..++-..-.+|+|+++++++|+++   +++ .+..+.
T Consensus        41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~l--sdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~  116 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLEL--SDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELE  116 (260)
T ss_pred             cccchhhhhhhccceeec-ccCCCcchhhhhcc--cCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhc
Confidence            455667777777665333 22445788999998  555  33 356656667799999999999866   443 367777


Q ss_pred             CCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          381 ELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       381 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      +|..|++..|..+..         ....-+.+.-|++|++|+
T Consensus       117 nL~~Ldl~n~~~~~l---------~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNL---------DDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             chhhhhcccCCcccc---------ccHHHHHHHHhhhhcccc
Confidence            888888888864321         222333455677777765

>PF13245 AAA_19: Part of AAA domain

Probab=96.46  E-value=0.0072  Score=43.05  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=17.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +++.|.|++|+|||+++.+.....
T Consensus        11 ~~~vv~g~pGtGKT~~~~~~i~~l   34 (76)
T PF13245_consen   11 PLFVVQGPPGTGKTTTLAARIAEL   34 (76)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            356789999999995555555444

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.45  E-value=0.0042  Score=50.23  Aligned_cols=39  Identities=21%  Similarity=0.422  Sum_probs=28.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      ++|.|+|..|+|||||++.+++... ...+...+......
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~   39 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH   39 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence            5899999999999999999999985 34555555555444

>TIGR00235 udk uridine kinase

Probab=96.44  E-value=0.0028  Score=55.27  Aligned_cols=25  Identities=36%  Similarity=0.472  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|++|+|||||++.++....
T Consensus         7 ~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         7 IIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4799999999999999999998763

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=96.44  E-value=0.017  Score=51.63  Aligned_cols=50  Identities=16%  Similarity=0.250  Sum_probs=34.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILE   54 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~   54 (424)
                      .++.|.|++|+|||+++.+++..... .+-..++|+++..  +...+.+.+..
T Consensus        14 ~l~lI~G~~G~GKT~~~~~~~~~~~~-~~g~~vly~s~E~--~~~~~~~r~~~   63 (242)
T cd00984          14 DLIIIAARPSMGKTAFALNIAENIAK-KQGKPVLFFSLEM--SKEQLLQRLLA   63 (242)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCceEEEeCCC--CHHHHHHHHHH
Confidence            37889999999999999998887642 2134577777554  44555555543

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>TIGR01351 adk adenylate kinases

Probab=96.43  E-value=0.0089  Score=52.20  Aligned_cols=22  Identities=27%  Similarity=0.521  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.|.|++|+||||+|+.+++..
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~   23 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKY   23 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7899999999999999999866

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.43  E-value=0.026  Score=50.21  Aligned_cols=127  Identities=21%  Similarity=0.302  Sum_probs=70.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCC----------------CC-ceEEEEE----------------eccC------
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESR----------------RF-DIIFWEN----------------INTD------   42 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----------------~f-~~~~wv~----------------~~~~------   42 (424)
                      .+++|.|+.|+|||||.+.++.-.+...                .+ ..+.|+.                .++.      
T Consensus        29 ~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~  108 (258)
T COG1120          29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF  108 (258)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccc
Confidence            4789999999999999999987553100                00 0122221                1111      


Q ss_pred             ----CCHHHHHHHHHHHhcccc------cccChhHHHH-HHHHHhccCcEEEEEcCCCCcchhhhh----cc-C--CCCC
Q 037045           43 ----GNIRDIQEIILERLKVNA------KELNNDLRAD-IISKELNDRSYVLFLDGVSSEINFKEI----GM-H--DDHG  104 (424)
Q Consensus        43 ----~~~~~~~~~i~~~l~~~~------~~~~~~~~~~-~l~~~l~~~~~LlvlD~~~~~~~~~~~----~~-~--~~~~  104 (424)
                          ....+...+.++.++...      ...+-++.+. .+...+-++.=++.+|+--+..|+...    .+ .  ....
T Consensus       109 ~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~  188 (258)
T COG1120         109 GRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK  188 (258)
T ss_pred             cCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhc
Confidence                112224555566665544      3333344433 445566677788899996655432222    11 1  3355


Q ss_pred             CcEEEEEecchhhhc-ccCceEEec
Q 037045          105 RGKVVFACRSREFCW-QADGVIHVQ  128 (424)
Q Consensus       105 ~~~iiittr~~~~~~-~~~~~~~l~  128 (424)
                      +..||+++.+-+.+. -.++.+-|+
T Consensus       189 ~~tvv~vlHDlN~A~ryad~~i~lk  213 (258)
T COG1120         189 GLTVVMVLHDLNLAARYADHLILLK  213 (258)
T ss_pred             CCEEEEEecCHHHHHHhCCEEEEEE
Confidence            677888888877766 333333333

>PRK14974 cell division protein FtsY; Provisional

Probab=96.43  E-value=0.015  Score=54.23  Aligned_cols=88  Identities=23%  Similarity=0.181  Sum_probs=48.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcccc-c---ccChhHH-HHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNA-K---ELNNDLR-ADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-~---~~~~~~~-~~~l~~~   75 (424)
                      .+|++.|+.|+||||++.+++..... ..+ .+..+..... .....-++.....++... .   ..+.... ...+...
T Consensus       141 ~vi~~~G~~GvGKTTtiakLA~~l~~-~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~  218 (336)
T PRK14974        141 VVIVFVGVNGTGKTTTIAKLAYYLKK-NGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA  218 (336)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence            58999999999999999999987742 223 3444554332 122234455566666443 1   1111111 1222221


Q ss_pred             hccCcEEEEEcCCCCc
Q 037045           76 LNDRSYVLFLDGVSSE   91 (424)
Q Consensus        76 l~~~~~LlvlD~~~~~   91 (424)
                      .....-++++|.+...
T Consensus       219 ~~~~~DvVLIDTaGr~  234 (336)
T PRK14974        219 KARGIDVVLIDTAGRM  234 (336)
T ss_pred             HhCCCCEEEEECCCcc
Confidence            1122239999998654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.41  E-value=0.00024  Score=62.41  Aligned_cols=100  Identities=22%  Similarity=0.252  Sum_probs=67.0

Q ss_pred             cCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCCh--hhhccCCC
Q 037045          282 PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPA--EIGRLQKL  359 (424)
Q Consensus       282 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~--~~~~l~~L  359 (424)
                      ..+.+.+.|++-++.++++.-  ...|+.|++|.++-|+++.+.+ +..+.+|+.|.+  ..|.+.++-+  -+.++++|
T Consensus        16 sdl~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYL--RkN~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   16 SDLENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYL--RKNCIESLDELEYLKNLPSL   90 (388)
T ss_pred             hHHHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchh-HHHHHHHHHHHH--HhcccccHHHHHHHhcCchh
Confidence            346677778888888776654  4568888888888888877633 667777777777  6777766643  45677777


Q ss_pred             CEEEecCCcCc-ccchh-----hhcCCCCCEee
Q 037045          360 EILDVSHTKVQ-CLPSE-----IGQLIELKYLR  386 (424)
Q Consensus       360 ~~L~l~~~~i~-~lp~~-----i~~l~~L~~l~  386 (424)
                      +.|.+.-|+.. .-+..     +..+++|+.|+
T Consensus        91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            77777766633 22221     34566666665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.41  E-value=0.00019  Score=63.09  Aligned_cols=97  Identities=20%  Similarity=0.211  Sum_probs=72.6

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh--hhhcccccceeeec
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP--SISRLINLNALFLR  340 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~--~~~~l~~L~~l~l~  340 (424)
                      .+++.|++.|+.+..+.-+..++.|++|.|+.|+++.+.+  +..++.|+.|.+..|.+.++..  -+.++++|+.|++ 
T Consensus        19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL-   95 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL-   95 (388)
T ss_pred             HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh-
Confidence            5677888888888888777888889999999999988776  6678889999999998866643  2577888888888 


Q ss_pred             ccccc-cccCCh-----hhhccCCCCEEE
Q 037045          341 SSCSL-LLQLPA-----EIGRLQKLEILD  363 (424)
Q Consensus       341 ~~~~~-~~~lp~-----~~~~l~~L~~L~  363 (424)
                       ..|. .+.-+.     -+..+|+|+.||
T Consensus        96 -~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 -DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             -ccCCcccccchhHHHHHHHHcccchhcc
Confidence             4443 333332     234577888776

>TIGR01069 mutS2 MutS2 family protein

Probab=96.41  E-value=0.0028  Score=65.90  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      ++++|+|+.|.||||+.+.+.-.
T Consensus       323 ~~liItGpNg~GKSTlLK~i~~~  345 (771)
T TIGR01069       323 RVLAITGPNTGGKTVTLKTLGLL  345 (771)
T ss_pred             eEEEEECCCCCCchHHHHHHHHH
Confidence            47899999999999999998765

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=96.41  E-value=0.04  Score=45.92  Aligned_cols=112  Identities=15%  Similarity=0.120  Sum_probs=61.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc---CCCHHHHHHHHHHHhcccc-------cccC-------
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT---DGNIRDIQEIILERLKVNA-------KELN-------   64 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~~~-------~~~~-------   64 (424)
                      ..|-|++..|.||||.|-.++-+..  .+--.++.+.+-+   ...-...++.+  .+....       ...+       
T Consensus         6 Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~   81 (173)
T TIGR00708         6 GIIIVHTGNGKGKTTAAFGMALRAL--GHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI   81 (173)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence            4678899999999999999998884  3333343333322   22333344332  111110       0111       


Q ss_pred             hhHHHHHHHHHhccCcE-EEEEcCCCCcc-----hhhhh--ccCCCCCCcEEEEEecchhh
Q 037045           65 NDLRADIISKELNDRSY-VLFLDGVSSEI-----NFKEI--GMHDDHGRGKVVFACRSREF  117 (424)
Q Consensus        65 ~~~~~~~l~~~l~~~~~-LlvlD~~~~~~-----~~~~~--~~~~~~~~~~iiittr~~~~  117 (424)
                      ..+..+..++.+...+| ++|||.+-...     +.+++  .+...-.+..+|+|-|+..-
T Consensus        82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~  142 (173)
T TIGR00708        82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQ  142 (173)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCH
Confidence            12223444555556666 99999975321     22222  12234455689999997643

Alternate name: corrinoid adenosyltransferase.

>PRK05922 type III secretion system ATPase; Validated

Probab=96.40  E-value=0.015  Score=55.80  Aligned_cols=86  Identities=16%  Similarity=0.243  Sum_probs=50.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccc-----cccC--hhH------
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNA-----KELN--NDL------   67 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-----~~~~--~~~------   67 (424)
                      ..++|.|+.|+|||||.+.++...    ..+...+..++. ..+..+++.+.........     ...+  ...      
T Consensus       158 qrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~  233 (434)
T PRK05922        158 QRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR  233 (434)
T ss_pred             cEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence            358999999999999999999755    224344444444 3445556655554433222     1111  111      


Q ss_pred             HHHHHHHHh--ccCcEEEEEcCCCCc
Q 037045           68 RADIISKEL--NDRSYVLFLDGVSSE   91 (424)
Q Consensus        68 ~~~~l~~~l--~~~~~LlvlD~~~~~   91 (424)
                      ..-.+.+++  +++++|+++|++-..
T Consensus       234 ~a~tiAEyfrd~G~~VLl~~DslTR~  259 (434)
T PRK05922        234 AAMTIAEYFRDQGHRVLFIMDSLSRW  259 (434)
T ss_pred             HHHHHHHHHHHcCCCEEEeccchhHH
Confidence            112233444  368999999998654

>TIGR00416 sms DNA repair protein RadA

Probab=96.40  E-value=0.019  Score=56.15  Aligned_cols=81  Identities=17%  Similarity=0.281  Sum_probs=48.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      .++.|.|.+|+|||||+.+++....  ..-..++|++...  +..++... +..++...      ...+.+    .+.+.
T Consensus        95 svilI~G~pGsGKTTL~lq~a~~~a--~~g~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l~~~~e~~~~----~I~~~  165 (454)
T TIGR00416        95 SLILIGGDPGIGKSTLLLQVACQLA--KNQMKVLYVSGEE--SLQQIKMR-AIRLGLPEPNLYVLSETNWE----QICAN  165 (454)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECcC--CHHHHHHH-HHHcCCChHHeEEcCCCCHH----HHHHH
Confidence            4789999999999999999988763  2224588887543  33333322 23333322      222333    33333


Q ss_pred             hcc-CcEEEEEcCCCCc
Q 037045           76 LND-RSYVLFLDGVSSE   91 (424)
Q Consensus        76 l~~-~~~LlvlD~~~~~   91 (424)
                      +.. +.-++|+|.++..
T Consensus       166 i~~~~~~~vVIDSIq~l  182 (454)
T TIGR00416       166 IEEENPQACVIDSIQTL  182 (454)
T ss_pred             HHhcCCcEEEEecchhh
Confidence            333 4558999987653

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=96.40  E-value=0.056  Score=45.29  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      ++.|+|++|.||||+.+.+|...+
T Consensus        30 f~fl~GpSGAGKSTllkLi~~~e~   53 (223)
T COG2884          30 FVFLTGPSGAGKSTLLKLIYGEER   53 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhhc
Confidence            678999999999999999998774

>PRK14532 adenylate kinase; Provisional

Probab=96.39  E-value=0.014  Score=50.02  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.|.|++|+||||+|+.+++..
T Consensus         3 i~~~G~pGsGKsT~a~~la~~~   24 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEER   24 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7889999999999999999876

>PRK03839 putative kinase; Provisional

Probab=96.39  E-value=0.0031  Score=53.58  Aligned_cols=23  Identities=43%  Similarity=0.559  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|.|.|++|+||||+++.+++..
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~   24 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999987

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.39  E-value=0.00031  Score=62.38  Aligned_cols=150  Identities=20%  Similarity=0.197  Sum_probs=109.3

Q ss_pred             ccceeEEEeeccCCCC--CC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCC-CCcCC--hhhhcccccc
Q 037045          262 DAHTKRLSLFGFPSST--LP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETN-IGCLP--PSISRLINLN  335 (424)
Q Consensus       262 ~~~l~~L~l~~~~~~~--~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~p--~~~~~l~~L~  335 (424)
                      ++.+++|+++...++.  +- -...|.+|+.|.+.++.+.+.....+..-.+|+.|+++++. +....  --+..+..|.
T Consensus       184 rsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  184 RSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            3779999999988875  22 23889999999999999998776667777899999999984 43332  3467889999


Q ss_pred             eeeeccccccc-ccCCh-hhhc-cCCCCEEEecCCc--Cc-ccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcC
Q 037045          336 ALFLRSSCSLL-LQLPA-EIGR-LQKLEILDVSHTK--VQ-CLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMIS  408 (424)
Q Consensus       336 ~l~l~~~~~~~-~~lp~-~~~~-l~~L~~L~l~~~~--i~-~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~  408 (424)
                      .||+  +.+.. .+.-. .+.. -++|..|++++++  +. +--.. ...++.|.+|++++|-...          + ..
T Consensus       264 ~LNl--sWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~----------~-~~  330 (419)
T KOG2120|consen  264 ELNL--SWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK----------N-DC  330 (419)
T ss_pred             hcCc--hHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC----------c-hH
Confidence            9999  44443 22211 1111 2578889998885  32 21122 4688999999999985432          2 67


Q ss_pred             hhhhhccccCceeecC
Q 037045          409 LNIISKLRLLEELIIE  424 (424)
Q Consensus       409 ~~~l~~l~~L~~L~l~  424 (424)
                      +.++-+++-|++|+++
T Consensus       331 ~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  331 FQEFFKFNYLQHLSLS  346 (419)
T ss_pred             HHHHHhcchheeeehh
Confidence            8899999999999875

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.0054  Score=54.71  Aligned_cols=152  Identities=17%  Similarity=0.170  Sum_probs=92.1

Q ss_pred             cceeEEEeeccCCCC-CCCC-cCcccccEEEccCCCCC-CCChHHhcccCCCcEEEccCCCC------CcCChhhh----
Q 037045          263 AHTKRLSLFGFPSST-LPDM-PNCCEILTLILEGKRLE-KLPTSFFDYMCHLQLLDLHETNI------GCLPPSIS----  329 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~-~~~~-~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~------~~~p~~~~----  329 (424)
                      +.++.|+++.|.+.. +... ....+|++|.+.+..+. ......+..+|.++.|.++.|++      .+....++    
T Consensus        97 P~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~  176 (418)
T KOG2982|consen   97 PALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVL  176 (418)
T ss_pred             ccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhh
Confidence            889999999999886 2333 56778999988877765 22233355566666666665522      00000011    


Q ss_pred             --------------------cccccceeeecccccccccCC--hhhhccCCCCEEEecCCcCcccc--hhhhcCCCCCEe
Q 037045          330 --------------------RLINLNALFLRSSCSLLLQLP--AEIGRLQKLEILDVSHTKVQCLP--SEIGQLIELKYL  385 (424)
Q Consensus       330 --------------------~l~~L~~l~l~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~l  385 (424)
                                          -++++..+-+  ..+.+.+..  ...-.++.+..|+++.+++.+.-  +.+..++.|+-|
T Consensus       177 tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v--~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dl  254 (418)
T KOG2982|consen  177 TLHQLPCLEQLWLNKNKLSRIFPNVNSVFV--CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDL  254 (418)
T ss_pred             hhhcCCcHHHHHHHHHhHHhhcccchheee--ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhhee
Confidence                                1344444444  344443332  23445677778888888876442  357888999999


Q ss_pred             eeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          386 RVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       386 ~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      +++.+++...+-.      .....--++.|++++.|+
T Consensus       255 Rv~~~Pl~d~l~~------~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  255 RVSENPLSDPLRG------GERRFLLIARLTKVQVLN  285 (418)
T ss_pred             eccCCcccccccC------CcceEEEEeeccceEEec
Confidence            9999876543322      333444556777777765

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=96.38  E-value=0.0032  Score=53.27  Aligned_cols=24  Identities=25%  Similarity=0.405  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|.+.|++|+||||+|+.+.+..
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~   26 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVL   26 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            589999999999999999999876

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK06936 type III secretion system ATPase; Provisional

Probab=96.38  E-value=0.017  Score=55.50  Aligned_cols=86  Identities=21%  Similarity=0.310  Sum_probs=54.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcccc-------cccChhHH-----
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNA-------KELNNDLR-----   68 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~-----   68 (424)
                      ..++|.|.+|+|||||.+.++....    .+.+++.-++.. ....++.+..+..-+...       ...+....     
T Consensus       163 q~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~  238 (439)
T PRK06936        163 QRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGF  238 (439)
T ss_pred             CEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHH
Confidence            3689999999999999999998662    356778777764 456666655443322111       11111111     


Q ss_pred             -HHHHHHHh--ccCcEEEEEcCCCCc
Q 037045           69 -ADIISKEL--NDRSYVLFLDGVSSE   91 (424)
Q Consensus        69 -~~~l~~~l--~~~~~LlvlD~~~~~   91 (424)
                       .-.+.+++  +++++|+++|++...
T Consensus       239 ~a~tiAEyfrd~G~~Vll~~DslTR~  264 (439)
T PRK06936        239 VATSIAEYFRDQGKRVLLLMDSVTRF  264 (439)
T ss_pred             HHHHHHHHHHHcCCCEEEeccchhHH
Confidence             12233344  468999999998654

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.37  E-value=0.007  Score=53.52  Aligned_cols=84  Identities=14%  Similarity=0.195  Sum_probs=50.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCC-CceEEEEEeccCCCHHHHHHHHHHHhcccc----------------c---
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRR-FDIIFWENINTDGNIRDIQEIILERLKVNA----------------K---   61 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------------~---   61 (424)
                      +++.|.|++|+|||+++.+++....  .. -..++|++...+  .+++.+.+. .++...                .   
T Consensus        20 s~~li~G~~GsGKT~l~~q~l~~~~--~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~   94 (226)
T PF06745_consen   20 SVVLISGPPGSGKTTLALQFLYNGL--KNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG   94 (226)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH--HHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHhh--hhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence            4789999999999999999886652  33 456788886544  344444332 222110                1   


Q ss_pred             --ccChhHHHHHHHHHhcc-CcEEEEEcCCCC
Q 037045           62 --ELNNDLRADIISKELND-RSYVLFLDGVSS   90 (424)
Q Consensus        62 --~~~~~~~~~~l~~~l~~-~~~LlvlD~~~~   90 (424)
                        ..+.......+.+.++. +...+|+|.+..
T Consensus        95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~  126 (226)
T PF06745_consen   95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSA  126 (226)
T ss_dssp             -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHH
T ss_pred             ccccCHHHHHHHHHHHHHhcCCCEEEEECHHH
Confidence              23445555666665554 446888888543

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK00279 adk adenylate kinase; Reviewed

Probab=96.37  E-value=0.012  Score=51.61  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|.|.|++|+||||+|+.+++..
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~   24 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKY   24 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999999876

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.37  E-value=0.017  Score=59.24  Aligned_cols=40  Identities=25%  Similarity=0.302  Sum_probs=28.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      +|++++|+.|+||||.+.+++...........+..++...
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt  225 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS  225 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc
Confidence            4899999999999999999998763222223455555433

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=96.36  E-value=0.0028  Score=53.85  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|+|.|.+|+||||+|+.+++..
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~   23 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRIL   23 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999999986

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK14531 adenylate kinase; Provisional

Probab=96.36  E-value=0.011  Score=50.37  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|.|.|++|+||||+++.+++..
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~   26 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAH   26 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999976

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=96.36  E-value=0.034  Score=50.67  Aligned_cols=51  Identities=16%  Similarity=0.125  Sum_probs=36.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILER   55 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~   55 (424)
                      .++.|.|++|+||||++.+++.... ..+-..++|+++..  ...++...+...
T Consensus        31 ~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~   81 (271)
T cd01122          31 ELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQ   81 (271)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence            4788999999999999999988763 22235688887655  345555555444

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=96.36  E-value=0.0022  Score=50.17  Aligned_cols=28  Identities=36%  Similarity=0.504  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCce
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDI   33 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~   33 (424)
                      |.|.|.+|+|||++|+.++...  ...|..
T Consensus         2 vLleg~PG~GKT~la~~lA~~~--~~~f~R   29 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSL--GLSFKR   29 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHT--T--EEE
T ss_pred             EeeECCCccHHHHHHHHHHHHc--CCceeE
Confidence            5789999999999999999988  566643

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.35  E-value=0.021  Score=47.24  Aligned_cols=120  Identities=18%  Similarity=0.177  Sum_probs=62.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHH-HHHHHHHhccCc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLR-ADIISKELNDRS   80 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~l~~~l~~~~   80 (424)
                      .+++|.|+.|.|||||++.++....   ...+.+++.-......  ........++.... .+.++. .-.+...+-...
T Consensus        26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q-lS~G~~~r~~l~~~l~~~~   99 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKL--PLEELRRRIGYVPQ-LSGGQRQRVALARALLLNP   99 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccC--CHHHHHhceEEEee-CCHHHHHHHHHHHHHhcCC
Confidence            3789999999999999999988652   3445555543221110  01111222221111 111221 222444444567


Q ss_pred             EEEEEcCCCCcchhhhh-----ccC-CCCCCcEEEEEecchhhhcc-cCceEEe
Q 037045           81 YVLFLDGVSSEINFKEI-----GMH-DDHGRGKVVFACRSREFCWQ-ADGVIHV  127 (424)
Q Consensus        81 ~LlvlD~~~~~~~~~~~-----~~~-~~~~~~~iiittr~~~~~~~-~~~~~~l  127 (424)
                      =++++|+.....|....     .+. ....+..++++|........ .+..+.+
T Consensus       100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l  153 (157)
T cd00267         100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVL  153 (157)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            88999997765432222     011 11224678888877666552 2444443

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=96.35  E-value=0.0039  Score=56.62  Aligned_cols=77  Identities=22%  Similarity=0.435  Sum_probs=40.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -+.++|+.|+|||++++...+.... +.+ .+.-+.++...+...+.+.+-..+...... ..        .--.+++++
T Consensus        35 pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~-~~--------gP~~~k~lv  103 (272)
T PF12775_consen   35 PVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQKIIESKLEKRRGR-VY--------GPPGGKKLV  103 (272)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHHHCCCTTECECTTE-EE--------EEESSSEEE
T ss_pred             cEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC-CC--------CCCCCcEEE
Confidence            4789999999999999999876532 221 233445555433333322221111110000 00        001357899


Q ss_pred             EEEcCCCC
Q 037045           83 LFLDGVSS   90 (424)
Q Consensus        83 lvlD~~~~   90 (424)
                      +.+||+.-
T Consensus       104 ~fiDDlN~  111 (272)
T PF12775_consen  104 LFIDDLNM  111 (272)
T ss_dssp             EEEETTT-
T ss_pred             EEecccCC
Confidence            99999854

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=96.34  E-value=0.017  Score=55.54  Aligned_cols=87  Identities=17%  Similarity=0.234  Sum_probs=50.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc-------cccChhH------H
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA-------KELNNDL------R   68 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~~~------~   68 (424)
                      ..++|.|.+|+|||||++.++....   ...+++...-.+..+..++.+..+..-+...       ...+...      .
T Consensus       141 q~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~  217 (418)
T TIGR03498       141 QRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYT  217 (418)
T ss_pred             cEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHH
Confidence            3689999999999999998887652   2223333333335566667665544422211       1111111      1


Q ss_pred             HHHHHHHh--ccCcEEEEEcCCCCc
Q 037045           69 ADIISKEL--NDRSYVLFLDGVSSE   91 (424)
Q Consensus        69 ~~~l~~~l--~~~~~LlvlD~~~~~   91 (424)
                      .-.+.+++  +++++|+++|++...
T Consensus       218 a~~iAEyfrd~G~~Vll~~DslTr~  242 (418)
T TIGR03498       218 ATAIAEYFRDQGKDVLLLMDSVTRF  242 (418)
T ss_pred             HHHHHHHHHHcCCCEEEeccchhHH
Confidence            12234444  468999999998653

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.32  E-value=0.029  Score=55.62  Aligned_cols=33  Identities=33%  Similarity=0.635  Sum_probs=27.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN   38 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~   38 (424)
                      +++.++||+|+||||.++.+++..    .|+.+=|.+
T Consensus        46 ~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n   78 (519)
T PF03215_consen   46 RILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN   78 (519)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence            578999999999999999999976    455555653

>PRK13949 shikimate kinase; Provisional

Probab=96.32  E-value=0.0039  Score=52.34  Aligned_cols=25  Identities=36%  Similarity=0.598  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+-|.|+|+.|+||||+++.+++..
T Consensus         1 m~~I~liG~~GsGKstl~~~La~~l   25 (169)
T PRK13949          1 MARIFLVGYMGAGKTTLGKALAREL   25 (169)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            5679999999999999999999987

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.30  E-value=0.0023  Score=55.97  Aligned_cols=75  Identities=27%  Similarity=0.355  Sum_probs=43.7

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCC--CCC-CCChHHhcccCCCcEEEccCCCCC---cCChhhhcccccce
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGK--RLE-KLPTSFFDYMCHLQLLDLHETNIG---CLPPSISRLINLNA  336 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~--~l~-~~~~~~~~~~~~L~~L~l~~~~~~---~~p~~~~~l~~L~~  336 (424)
                      ..++.+++.+..++.+..+..+++|+.|.++.|  ++. +++.. ...+++|+++++++|++.   ++++ ...+.+|..
T Consensus        43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~  120 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKS  120 (260)
T ss_pred             cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccch-hhhhcchhh
Confidence            455566666666666666666777777777777  333 22222 334577777777777652   2322 445555666


Q ss_pred             eee
Q 037045          337 LFL  339 (424)
Q Consensus       337 l~l  339 (424)
                      |++
T Consensus       121 Ldl  123 (260)
T KOG2739|consen  121 LDL  123 (260)
T ss_pred             hhc
Confidence            666

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=96.30  E-value=0.02  Score=51.79  Aligned_cols=110  Identities=15%  Similarity=0.124  Sum_probs=58.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhccc--c---cccCh---hHHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVN--A---KELNN---DLRADIISK   74 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--~---~~~~~---~~~~~~l~~   74 (424)
                      -++|.|+.|+|||||.+.++....   ...+.+++.-..-... +-..++......-  .   ...+.   .....-+..
T Consensus       113 ~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~  188 (270)
T TIGR02858       113 NTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMM  188 (270)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEeecc-hhHHHHHHHhcccccccccccccccccchHHHHHHH
Confidence            478999999999999999998773   2233444431111100 1112232222111  1   11111   111222333


Q ss_pred             Hhc-cCcEEEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhh
Q 037045           75 ELN-DRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREF  117 (424)
Q Consensus        75 ~l~-~~~~LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~  117 (424)
                      .+. ..+-++++|+......+..+ +.....|..+|+||.....
T Consensus       189 ~i~~~~P~villDE~~~~e~~~~l-~~~~~~G~~vI~ttH~~~~  231 (270)
T TIGR02858       189 LIRSMSPDVIVVDEIGREEDVEAL-LEALHAGVSIIATAHGRDV  231 (270)
T ss_pred             HHHhCCCCEEEEeCCCcHHHHHHH-HHHHhCCCEEEEEechhHH
Confidence            333 46789999998877655555 1112357789999986554

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit

Probab=96.29  E-value=0.019  Score=55.77  Aligned_cols=89  Identities=9%  Similarity=0.037  Sum_probs=56.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCC--ceEEEEEeccC-CCHHHHHHHHHHHhcccc-------cccChh------
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRF--DIIFWENINTD-GNIRDIQEIILERLKVNA-------KELNND------   66 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~------   66 (424)
                      -++|.|.+|+|||+|+.++++....++.+  ..++++-++.. .+..++.+.+...=....       ...+..      
T Consensus       143 R~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~  222 (458)
T TIGR01041       143 KLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTP  222 (458)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHH
Confidence            47899999999999999999877433222  25777777664 456677777764422211       111111      


Q ss_pred             HHHHHHHHHhc---cCcEEEEEcCCCCc
Q 037045           67 LRADIISKELN---DRSYVLFLDGVSSE   91 (424)
Q Consensus        67 ~~~~~l~~~l~---~~~~LlvlD~~~~~   91 (424)
                      .....+.++++   ++++|+++|++...
T Consensus       223 ~~a~tiAEyfr~d~G~~VLli~DslTR~  250 (458)
T TIGR01041       223 RMALTAAEYLAFEKDMHVLVILTDMTNY  250 (458)
T ss_pred             HHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence            11223455555   57899999998653

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=96.29  E-value=0.024  Score=47.50  Aligned_cols=82  Identities=12%  Similarity=0.112  Sum_probs=46.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc-cccC---hhHHHHHHHHHhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA-KELN---NDLRADIISKELN   77 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~~---~~~~~~~l~~~l~   77 (424)
                      .++.|.|.+|+||||+|..++....  .   .++++.-... ..++..+.+........ ....   ..++...+.....
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~--~---~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~   75 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSG--L---QVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA   75 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcC--C---CcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence            4789999999999999999988752  1   2445554443 34455555544433222 1111   1123333333222


Q ss_pred             cCcEEEEEcCCCC
Q 037045           78 DRSYVLFLDGVSS   90 (424)
Q Consensus        78 ~~~~LlvlD~~~~   90 (424)
                       +.-++++|.+..
T Consensus        76 -~~~~VlID~Lt~   87 (170)
T PRK05800         76 -PGRCVLVDCLTT   87 (170)
T ss_pred             -CCCEEEehhHHH
Confidence             233788898643

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.29  E-value=0.095  Score=53.53  Aligned_cols=145  Identities=12%  Similarity=0.154  Sum_probs=82.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-ccCcEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-NDRSYV   82 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~L   82 (424)
                      +.|+|++|+|||-||+.++-...  -     =|++++..    ++.+.+    ....     ......+...- ...+++
T Consensus       347 vLL~GPPGTGKTLLAKAiAGEAg--V-----PF~svSGS----EFvE~~----~g~~-----asrvr~lf~~ar~~aP~i  406 (774)
T KOG0731|consen  347 VLLVGPPGTGKTLLAKAIAGEAG--V-----PFFSVSGS----EFVEMF----VGVG-----ASRVRDLFPLARKNAPSI  406 (774)
T ss_pred             eEEECCCCCcHHHHHHHHhcccC--C-----ceeeechH----HHHHHh----cccc-----hHHHHHHHHHhhccCCeE
Confidence            67899999999999999999873  2     23343332    222111    1110     11111122222 235789


Q ss_pred             EEEcCCCCcc-----------------hhhhhccC---CCCCCcEEEE-Eecchhhhc-------ccCceEEecCCCHHH
Q 037045           83 LFLDGVSSEI-----------------NFKEIGMH---DDHGRGKVVF-ACRSREFCW-------QADGVIHVQQLCQRE  134 (424)
Q Consensus        83 lvlD~~~~~~-----------------~~~~~~~~---~~~~~~~iii-ttr~~~~~~-------~~~~~~~l~~l~~~~  134 (424)
                      +.+|+++...                 -+.++...   ....+.-|++ +|+..+...       ..+..+.++.-+...
T Consensus       407 ifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~  486 (774)
T KOG0731|consen  407 IFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKG  486 (774)
T ss_pred             EEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhh
Confidence            9999876431                 13333111   1122323444 343333222       667788888888888


Q ss_pred             HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHH
Q 037045          135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYM  170 (424)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Pla  170 (424)
                      ..++|..++...... .+..++.+ |+...-|++=|
T Consensus       487 r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga  520 (774)
T KOG0731|consen  487 RASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA  520 (774)
T ss_pred             hHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence            889999888765322 44455566 99999888733

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=96.28  E-value=0.052  Score=48.43  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +..|.|++|+|||+|+..++....
T Consensus         3 ~~ll~g~~G~GKS~lal~la~~va   26 (239)
T cd01125           3 VSALVAPGGTGKSSLLLVLALAMA   26 (239)
T ss_pred             eeEEEcCCCCCHHHHHHHHHHHHh
Confidence            567899999999999999987653

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.28  E-value=0.0032  Score=54.48  Aligned_cols=23  Identities=39%  Similarity=0.501  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|+|.|++|+||||+++.+....
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998876

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.28  E-value=0.0039  Score=52.91  Aligned_cols=25  Identities=28%  Similarity=0.591  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      ++++|.|++|+||||+++.++....
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4789999999999999999988763

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK13947 shikimate kinase; Provisional

Probab=96.28  E-value=0.0044  Score=52.15  Aligned_cols=25  Identities=36%  Similarity=0.619  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.-|.|.|++|+||||+|+.+++..
T Consensus         1 m~~I~l~G~~GsGKst~a~~La~~l   25 (171)
T PRK13947          1 MKNIVLIGFMGTGKTTVGKRVATTL   25 (171)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            4568999999999999999999987

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.28  E-value=0.037  Score=46.53  Aligned_cols=24  Identities=38%  Similarity=0.620  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|.|||||.+.++--.
T Consensus        29 ~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          29 EKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            378999999999999999999876

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=96.28  E-value=0.0048  Score=52.36  Aligned_cols=24  Identities=38%  Similarity=0.578  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +|+|.|.+|+||||+|+.+.....
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~   24 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLR   24 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999874

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=96.27  E-value=0.015  Score=53.12  Aligned_cols=78  Identities=13%  Similarity=0.016  Sum_probs=40.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHH-HhcccccccChhHHHHHHHHHhccC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILE-RLKVNAKELNNDLRADIISKELNDR   79 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~-~l~~~~~~~~~~~~~~~l~~~l~~~   79 (424)
                      -+|+|.|+.|+||||+|+.+.........-..+..+............+..-. +-.......+.+.....+.....++
T Consensus        63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk~g~  141 (290)
T TIGR00554        63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLKSGK  141 (290)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHHCCC
Confidence            37999999999999999888766621011113445554443332222222110 0001114455555566665554443

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.26  E-value=0.043  Score=47.66  Aligned_cols=23  Identities=26%  Similarity=0.744  Sum_probs=21.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhc
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      |.+||.-|+|||+|++.+.+.+.
T Consensus        88 VLLwGaRGtGKSSLVKA~~~e~~  110 (287)
T COG2607          88 VLLWGARGTGKSSLVKALLNEYA  110 (287)
T ss_pred             eEEecCCCCChHHHHHHHHHHHH
Confidence            67899999999999999999883

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.26  E-value=0.011  Score=55.66  Aligned_cols=110  Identities=12%  Similarity=0.077  Sum_probs=60.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +.|.|.|+.|+||||+.+.++...  .......++.. ..+..  .........+...+...+.......++..++...=
T Consensus       123 g~ili~G~tGSGKTT~l~al~~~i--~~~~~~~i~ti-Edp~E--~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd  197 (343)
T TIGR01420       123 GLILVTGPTGSGKSTTLASMIDYI--NKNAAGHIITI-EDPIE--YVHRNKRSLINQREVGLDTLSFANALRAALREDPD  197 (343)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh--CcCCCCEEEEE-cCChh--hhccCccceEEccccCCCCcCHHHHHHHhhccCCC
Confidence            478999999999999999998876  33333444422 11111  11100000011111111223345667777888888


Q ss_pred             EEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhh
Q 037045           82 VLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREF  117 (424)
Q Consensus        82 LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~  117 (424)
                      ++++|++.+....... +.....|..++-|......
T Consensus       198 ~i~vgEird~~~~~~~-l~aa~tGh~v~~T~Ha~~~  232 (343)
T TIGR01420       198 VILIGEMRDLETVELA-LTAAETGHLVFGTLHTNSA  232 (343)
T ss_pred             EEEEeCCCCHHHHHHH-HHHHHcCCcEEEEEcCCCH
Confidence            9999999877655432 2223345555555544333

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=96.26  E-value=0.0061  Score=55.20  Aligned_cols=37  Identities=30%  Similarity=0.232  Sum_probs=30.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEec
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENIN   40 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~   40 (424)
                      |++|+|.|.+|+|||||+.++.....  +.. .+.-+...
T Consensus         1 M~~i~i~G~~gSGKTTLi~~Li~~L~--~~G-~V~~IKhd   37 (274)
T PRK14493          1 MKVLSIVGYKATGKTTLVERLVDRLS--GRG-RVGTVKHM   37 (274)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CEEEEEEc
Confidence            68999999999999999999999995  333 46666543

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=96.24  E-value=0.013  Score=48.24  Aligned_cols=78  Identities=23%  Similarity=0.361  Sum_probs=42.8

Q ss_pred             EEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-----CHHHHHHHHHHHhcccccccChhHHHHHHHHHhccC-
Q 037045            6 IWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-----NIRDIQEIILERLKVNAKELNNDLRADIISKELNDR-   79 (424)
Q Consensus         6 I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-   79 (424)
                      |.|++|+||||+|+.+++.+.       ...++++.-.     ......+.+...+. .....+.+.....+...+... 
T Consensus         1 i~G~PgsGK~t~~~~la~~~~-------~~~is~~~llr~~~~~~s~~g~~i~~~l~-~g~~vp~~~v~~ll~~~l~~~~   72 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYG-------LVHISVGDLLREEIKSDSELGKQIQEYLD-NGELVPDELVIELLKERLEQPP   72 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHT-------SEEEEHHHHHHHHHHTTSHHHHHHHHHHH-TTSS--HHHHHHHHHHHHHSGG
T ss_pred             CcCCCCCChHHHHHHHHHhcC-------cceechHHHHHHHHhhhhHHHHHHHHHHH-hhccchHHHHHHHHHHHHhhhc
Confidence            689999999999999999872       2455533310     00111222222222 112334445556666666543 


Q ss_pred             -cEEEEEcCCCCc
Q 037045           80 -SYVLFLDGVSSE   91 (424)
Q Consensus        80 -~~LlvlD~~~~~   91 (424)
                       ..-+|||++=..
T Consensus        73 ~~~g~ildGfPrt   85 (151)
T PF00406_consen   73 CNRGFILDGFPRT   85 (151)
T ss_dssp             TTTEEEEESB-SS
T ss_pred             ccceeeeeecccc
Confidence             567889997544

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK07667 uridine kinase; Provisional

Probab=96.24  E-value=0.0043  Score=53.35  Aligned_cols=25  Identities=32%  Similarity=0.307  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|++|+||||+|+.+.+...
T Consensus        18 ~iIgI~G~~gsGKStla~~L~~~l~   42 (193)
T PRK07667         18 FILGIDGLSRSGKTTFVANLKENMK   42 (193)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3799999999999999999999874

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=96.23  E-value=0.0036  Score=51.39  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++.|.|++|+||||+|+.+.+..
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~   23 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERL   23 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhc
Confidence            47899999999999999999875

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>CHL00060 atpB ATP synthase CF1 beta subunit

Probab=96.23  E-value=0.026  Score=54.93  Aligned_cols=88  Identities=22%  Similarity=0.325  Sum_probs=57.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHH-----Hhc----ccc---cccChh---
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILE-----RLK----VNA---KELNND---   66 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~-----~l~----~~~---~~~~~~---   66 (424)
                      -++|.|.+|+|||+|+.++..... +.+-+.++++-++.. ....++.+.+..     .-+    ...   ...++.   
T Consensus       163 R~gIfgg~GvGKs~L~~~~~~~~~-~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~  241 (494)
T CHL00060        163 KIGLFGGAGVGKTVLIMELINNIA-KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGA  241 (494)
T ss_pred             EEeeecCCCCChhHHHHHHHHHHH-HhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHH
Confidence            478999999999999999998732 222377888888774 456777777765     211    111   111111   


Q ss_pred             -----HHHHHHHHHhc--c-CcEEEEEcCCCCc
Q 037045           67 -----LRADIISKELN--D-RSYVLFLDGVSSE   91 (424)
Q Consensus        67 -----~~~~~l~~~l~--~-~~~LlvlD~~~~~   91 (424)
                           ...-.+.++++  + +++||++|++...
T Consensus       242 R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~  274 (494)
T CHL00060        242 RMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF  274 (494)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence                 22234556664  3 4999999998653

>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B

Probab=96.23  E-value=0.0059  Score=56.42  Aligned_cols=48  Identities=23%  Similarity=0.312  Sum_probs=34.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHH
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQE   50 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~   50 (424)
                      ||++.+.|-||+||||+|...+-....  .-..+.-++.....++.+++.
T Consensus         1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~--~G~rtLlvS~Dpa~~L~d~l~   48 (305)
T PF02374_consen    1 MRILFFGGKGGVGKTTVAAALALALAR--RGKRTLLVSTDPAHSLSDVLG   48 (305)
T ss_dssp             -SEEEEEESTTSSHHHHHHHHHHHHHH--TTS-EEEEESSTTTHHHHHHT
T ss_pred             CeEEEEecCCCCCcHHHHHHHHHHHhh--CCCCeeEeecCCCccHHHHhC
Confidence            689999999999999999888887742  223466667666666655554

...

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.22  E-value=0.0042  Score=50.13  Aligned_cols=23  Identities=39%  Similarity=0.697  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|+|.|++|+|||||++.+++..
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~   23 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcC
Confidence            47899999999999999999875

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.20  E-value=0.004  Score=52.87  Aligned_cols=24  Identities=42%  Similarity=0.564  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|+|.|++|+|||||++.++...
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccC
Confidence            579999999999999999999865

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit

Probab=96.19  E-value=0.025  Score=54.50  Aligned_cols=88  Identities=15%  Similarity=0.128  Sum_probs=57.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhcc------C-----CCCceEEEEEeccCCCHHHHHHHHHHHhc-ccc-------ccc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGE------S-----RRFDIIFWENINTDGNIRDIQEIILERLK-VNA-------KEL   63 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~------~-----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~-------~~~   63 (424)
                      -++|.|.+|+|||||+.++++....      +     ..-..+++.-++...+...++.+.+..-+ ...       ...
T Consensus       143 RigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~  222 (466)
T TIGR01040       143 KIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAND  222 (466)
T ss_pred             eeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCC
Confidence            5789999999999999999987741      0     11125788888888777777776666654 221       111


Q ss_pred             ChhH------HHHHHHHHhc---cCcEEEEEcCCCC
Q 037045           64 NNDL------RADIISKELN---DRSYVLFLDGVSS   90 (424)
Q Consensus        64 ~~~~------~~~~l~~~l~---~~~~LlvlD~~~~   90 (424)
                      +...      ..-.+.+.++   ++++|+++|++-.
T Consensus       223 p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr  258 (466)
T TIGR01040       223 PTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS  258 (466)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence            1111      1123445555   5899999999854

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.19  E-value=0.032  Score=46.98  Aligned_cols=24  Identities=29%  Similarity=0.529  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++-..
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          29 ESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcc
Confidence            378999999999999999999765

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=96.19  E-value=0.027  Score=52.18  Aligned_cols=86  Identities=19%  Similarity=0.285  Sum_probs=50.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccc-------cccChhH------
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNA-------KELNNDL------   67 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~------   67 (424)
                      ..++|.|..|+|||||.+.++....    .+..+...++. ..+..++..+....-+...       ...+...      
T Consensus        70 qri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~  145 (326)
T cd01136          70 QRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY  145 (326)
T ss_pred             cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence            3689999999999999999887652    23334444443 4466666666655432211       1111111      


Q ss_pred             HHHHHHHHh--ccCcEEEEEcCCCCc
Q 037045           68 RADIISKEL--NDRSYVLFLDGVSSE   91 (424)
Q Consensus        68 ~~~~l~~~l--~~~~~LlvlD~~~~~   91 (424)
                      ..-.+.+.+  +++++|+++|++-..
T Consensus       146 ~a~~~AEyfr~~g~~Vll~~Dsltr~  171 (326)
T cd01136         146 TATAIAEYFRDQGKDVLLLMDSLTRF  171 (326)
T ss_pred             HHHHHHHHHHHcCCCeEEEeccchHH
Confidence            111223333  468999999997653

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.18  E-value=0.035  Score=51.61  Aligned_cols=38  Identities=29%  Similarity=0.286  Sum_probs=28.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      .++++.|++|+||||++.+++....  ..-..+..++...
T Consensus       115 ~vi~lvGpnGsGKTTt~~kLA~~l~--~~g~~V~Li~~D~  152 (318)
T PRK10416        115 FVILVVGVNGVGKTTTIGKLAHKYK--AQGKKVLLAAGDT  152 (318)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHH--hcCCeEEEEecCc
Confidence            5899999999999999999999884  2223455555443

>PRK00131 aroK shikimate kinase; Reviewed

Probab=96.18  E-value=0.0048  Score=52.00  Aligned_cols=24  Identities=33%  Similarity=0.495  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ..|.|+|++|+||||+|+.+++..
T Consensus         5 ~~i~l~G~~GsGKstla~~La~~l   28 (175)
T PRK00131          5 PNIVLIGFMGAGKSTIGRLLAKRL   28 (175)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHh
Confidence            478999999999999999999987

>PHA00729 NTP-binding motif containing protein

Probab=96.17  E-value=0.0045  Score=53.89  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|.|+|.+|+||||||..+++..
T Consensus        19 nIlItG~pGvGKT~LA~aLa~~l   41 (226)
T PHA00729         19 SAVIFGKQGSGKTTYALKVARDV   41 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999975

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.039  Score=53.33  Aligned_cols=65  Identities=18%  Similarity=0.347  Sum_probs=41.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc----cC
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN----DR   79 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~   79 (424)
                      |.++|++|+|||-||+.++-...+  .|    |...+..+                 ++.-.+..+..++..+.    .-
T Consensus       340 VLLvGPPGTGKTlLARAvAGEA~V--PF----F~~sGSEF-----------------dEm~VGvGArRVRdLF~aAk~~A  396 (752)
T KOG0734|consen  340 VLLVGPPGTGKTLLARAVAGEAGV--PF----FYASGSEF-----------------DEMFVGVGARRVRDLFAAAKARA  396 (752)
T ss_pred             eEEeCCCCCchhHHHHHhhcccCC--Ce----Eeccccch-----------------hhhhhcccHHHHHHHHHHHHhcC
Confidence            679999999999999999988742  22    22222221                 22223333455555443    35


Q ss_pred             cEEEEEcCCCCc
Q 037045           80 SYVLFLDGVSSE   91 (424)
Q Consensus        80 ~~LlvlD~~~~~   91 (424)
                      +|+|.||+++..
T Consensus       397 PcIIFIDEiDav  408 (752)
T KOG0734|consen  397 PCIIFIDEIDAV  408 (752)
T ss_pred             CeEEEEechhhh
Confidence            899999998763

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.17  E-value=0.005  Score=51.27  Aligned_cols=24  Identities=38%  Similarity=0.552  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.||+|+|||||++++.++.
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            368999999999999999999976

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=96.17  E-value=0.0043  Score=50.59  Aligned_cols=23  Identities=39%  Similarity=0.593  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|.|.|++|+||||+|+.++...
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~   23 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKL   23 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999976

>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain

Probab=96.16  E-value=0.03  Score=50.34  Aligned_cols=85  Identities=14%  Similarity=0.221  Sum_probs=50.6

Q ss_pred             EEEEEcCCCCcHHHHH-HHHHHhhccCCCCce-EEEEEeccC-CCHHHHHHHHHHHhccc--c-----cccChhHH----
Q 037045            3 KICIWGPLGVGKTTIM-ENLHHSIGESRRFDI-IFWENINTD-GNIRDIQEIILERLKVN--A-----KELNNDLR----   68 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~--~-----~~~~~~~~----   68 (424)
                      -++|.|.+|+|||+|| .++.+..    .-+. ++++-++.. .+..++.+.+...=...  .     ...+....    
T Consensus        71 r~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~  146 (274)
T cd01132          71 RELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAP  146 (274)
T ss_pred             EEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHH
Confidence            5789999999999996 5565543    2344 467777664 45667777776432111  1     11111111    


Q ss_pred             --HHHHHHHh--ccCcEEEEEcCCCCc
Q 037045           69 --ADIISKEL--NDRSYVLFLDGVSSE   91 (424)
Q Consensus        69 --~~~l~~~l--~~~~~LlvlD~~~~~   91 (424)
                        .-.+.+.+  +++++|+++||+...
T Consensus       147 ~~a~aiAE~fr~~G~~Vlvl~DslTr~  173 (274)
T cd01132         147 YTGCAMGEYFMDNGKHALIIYDDLSKQ  173 (274)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence              12223333  468999999998664

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.

>COG3910 Predicted ATPase [General function prediction only]

Probab=96.16  E-value=0.11  Score=43.54  Aligned_cols=49  Identities=8%  Similarity=0.162  Sum_probs=31.7

Q ss_pred             cEEEEEcCCCCcc----hhhhhccC--CCCCCcEEEEEecchhhhc-ccCceEEec
Q 037045           80 SYVLFLDGVSSEI----NFKEIGMH--DDHGRGKVVFACRSREFCW-QADGVIHVQ  128 (424)
Q Consensus        80 ~~LlvlD~~~~~~----~~~~~~~~--~~~~~~~iiittr~~~~~~-~~~~~~~l~  128 (424)
                      .=+.|+|.-+...    +++-++..  -..+|+.|||.|.+..... ....+++..
T Consensus       147 ~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~  202 (233)
T COG3910         147 QGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEIS  202 (233)
T ss_pred             CceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEe
Confidence            3467889876542    33333222  3556799999999988777 666666655

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=96.15  E-value=0.099  Score=45.63  Aligned_cols=116  Identities=14%  Similarity=0.251  Sum_probs=68.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh---c-cC
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL---N-DR   79 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l---~-~~   79 (424)
                      +.++|++|.|||-||+.++....       +.|+.++...    +.++.   ++         +....+++.+   + ..
T Consensus       184 vlLygppgtGktLlaraVahht~-------c~firvsgse----lvqk~---ig---------egsrmvrelfvmareha  240 (404)
T KOG0728|consen  184 VLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGSE----LVQKY---IG---------EGSRMVRELFVMAREHA  240 (404)
T ss_pred             eEEecCCCCchhHHHHHHHhhcc-------eEEEEechHH----HHHHH---hh---------hhHHHHHHHHHHHHhcC
Confidence            67899999999999999998762       4455665541    11111   11         1122222222   2 24


Q ss_pred             cEEEEEcCCCCc------------c--------hhhhh-ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCC
Q 037045           80 SYVLFLDGVSSE------------I--------NFKEI-GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLC  131 (424)
Q Consensus        80 ~~LlvlD~~~~~------------~--------~~~~~-~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~  131 (424)
                      +-++..|.+++.            +        .+.++ +| ....+-|+|..|...++..       ..+..++..+-+
T Consensus       241 psiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgf-eatknikvimatnridild~allrpgridrkiefp~p~  319 (404)
T KOG0728|consen  241 PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGF-EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPN  319 (404)
T ss_pred             CceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccc-ccccceEEEEeccccccccHhhcCCCcccccccCCCCC
Confidence            678888888753            1        12222 22 2344567887776554443       566777888777


Q ss_pred             HHHHHHHHHHHh
Q 037045          132 QREAKKLFWEVV  143 (424)
Q Consensus       132 ~~~~~~l~~~~~  143 (424)
                      ++.-.++++-+.
T Consensus       320 e~ar~~ilkihs  331 (404)
T KOG0728|consen  320 EEARLDILKIHS  331 (404)
T ss_pred             HHHHHHHHHHhh
Confidence            776667765444

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.15  E-value=0.052  Score=48.14  Aligned_cols=126  Identities=17%  Similarity=0.271  Sum_probs=71.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccC-----------CCC---ceEEEEE----ec--cCCCH----------------
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGES-----------RRF---DIIFWEN----IN--TDGNI----------------   45 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~-----------~~f---~~~~wv~----~~--~~~~~----------------   45 (424)
                      .+++|.||.|.|||||.+.+.--.+..           ...   ..+.||.    +.  -+.++                
T Consensus        31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~  110 (254)
T COG1121          31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR  110 (254)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence            378999999999999999999744210           001   2355553    11  01111                


Q ss_pred             ------HHHHHHHHHHhcccc------cccChhHHH-HHHHHHhccCcEEEEEcCCCCcch------hhhh-ccCCCCCC
Q 037045           46 ------RDIQEIILERLKVNA------KELNNDLRA-DIISKELNDRSYVLFLDGVSSEIN------FKEI-GMHDDHGR  105 (424)
Q Consensus        46 ------~~~~~~i~~~l~~~~------~~~~~~~~~-~~l~~~l~~~~~LlvlD~~~~~~~------~~~~-~~~~~~~~  105 (424)
                            .+...+.++..+...      ...+-++.+ ..+.+.|-+..=|+++|+--...|      +-++ .-.... |
T Consensus       111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g  189 (254)
T COG1121         111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-G  189 (254)
T ss_pred             cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-C
Confidence                  234445555555443      333333433 355667778889999999544322      1111 001333 8


Q ss_pred             cEEEEEecchhhhc-ccCceEEec
Q 037045          106 GKVVFACRSREFCW-QADGVIHVQ  128 (424)
Q Consensus       106 ~~iiittr~~~~~~-~~~~~~~l~  128 (424)
                      +.|++.|.+-.... ..+.++-+.
T Consensus       190 ~tIl~vtHDL~~v~~~~D~vi~Ln  213 (254)
T COG1121         190 KTVLMVTHDLGLVMAYFDRVICLN  213 (254)
T ss_pred             CEEEEEeCCcHHhHhhCCEEEEEc
Confidence            99999998877665 445555444

>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]

Probab=96.14  E-value=0.049  Score=46.34  Aligned_cols=89  Identities=16%  Similarity=0.185  Sum_probs=62.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCce----EEEEEeccCCCHHHHHHHHHHHhcccc-------cccChhHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDI----IFWENINTDGNIRDIQEIILERLKVNA-------KELNNDLRADI   71 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~----~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~~   71 (424)
                      +|-|+|++|+|||....++..+......|.+    +.+++....++...+.+.+-..+....       .-.+++...+.
T Consensus        40 ~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~~~c~te~~~eEi  119 (293)
T KOG2859|consen   40 LVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIAAKCPTEEQLEEI  119 (293)
T ss_pred             EEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhhhhhhhhcCCcHhHHHHH
Confidence            6889999999999999999988766566644    788899999999988888777665442       22233344444


Q ss_pred             HHHHhccCcEEEEEcCCCCc
Q 037045           72 ISKELNDRSYVLFLDGVSSE   91 (424)
Q Consensus        72 l~~~l~~~~~LlvlD~~~~~   91 (424)
                      ....++.-+++-.+|+.+-.
T Consensus       120 ~~~Cm~Rf~~v~C~~s~~ll  139 (293)
T KOG2859|consen  120 AGECMSRFRFVNCFASDDLL  139 (293)
T ss_pred             HHHHHhhEEEEEeeccHHHH
Confidence            55555545666667765443

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.13  E-value=0.0057  Score=51.11  Aligned_cols=26  Identities=27%  Similarity=0.367  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +++++|.|.+|+|||||++.+.....
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHHh
Confidence            36899999999999999999998884

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=96.12  E-value=0.0078  Score=49.80  Aligned_cols=26  Identities=42%  Similarity=0.552  Sum_probs=24.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      |++++|.|..|+|||||+..+.....
T Consensus         1 m~vi~i~G~~gsGKTTli~~L~~~l~   26 (159)
T cd03116           1 MKVIGFVGYSGSGKTTLLEKLIPALS   26 (159)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999999999884

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK09099 type III secretion system ATPase; Provisional

Probab=96.12  E-value=0.026  Score=54.47  Aligned_cols=87  Identities=18%  Similarity=0.214  Sum_probs=51.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc-----cccC--hhH------H
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA-----KELN--NDL------R   68 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~--~~~------~   68 (424)
                      ..++|.|..|+|||||++.++.....   -.++++..-.+..+..++.+.+...-+...     ...+  ...      .
T Consensus       164 q~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~  240 (441)
T PRK09099        164 QRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYV  240 (441)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHH
Confidence            36899999999999999999876521   123444443445566666666654422111     1111  111      1


Q ss_pred             HHHHHHHh--ccCcEEEEEcCCCCc
Q 037045           69 ADIISKEL--NDRSYVLFLDGVSSE   91 (424)
Q Consensus        69 ~~~l~~~l--~~~~~LlvlD~~~~~   91 (424)
                      .-.+.+++  +++++|+++|++...
T Consensus       241 a~tiAEyfrd~G~~VLl~~DslTr~  265 (441)
T PRK09099        241 ATAIAEYFRDRGLRVLLMMDSLTRF  265 (441)
T ss_pred             HHHHHHHHHHcCCCEEEeccchhHH
Confidence            12233444  368999999998653

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.12  E-value=0.033  Score=51.69  Aligned_cols=25  Identities=32%  Similarity=0.567  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +=|.++|++|+|||-||+.|+....
T Consensus       246 kgvLm~GPPGTGKTlLAKAvATEc~  270 (491)
T KOG0738|consen  246 KGVLMVGPPGTGKTLLAKAVATECG  270 (491)
T ss_pred             ceeeeeCCCCCcHHHHHHHHHHhhc
Confidence            4578999999999999999999883

>PRK15453 phosphoribulokinase; Provisional

Probab=96.12  E-value=0.036  Score=49.89  Aligned_cols=74  Identities=12%  Similarity=0.014  Sum_probs=42.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC--CHHHHHHHHH--HHhcc--cc---cccChhHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG--NIRDIQEIIL--ERLKV--NA---KELNNDLRADII   72 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~--~~l~~--~~---~~~~~~~~~~~l   72 (424)
                      .+|+|.|.+|+||||+++.+.+...  ..-..+..++.....  +....-....  +.-+.  ..   +..+.+.+...+
T Consensus         6 piI~ItG~SGsGKTTva~~l~~if~--~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~l   83 (290)
T PRK15453          6 PIIAVTGSSGAGTTTVKRAFEKIFR--RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQLF   83 (290)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHh--hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHHH
Confidence            5899999999999999999998773  221235555554433  3223222221  11121  11   455566666666


Q ss_pred             HHHhc
Q 037045           73 SKELN   77 (424)
Q Consensus        73 ~~~l~   77 (424)
                      ++...
T Consensus        84 ~~l~~   88 (290)
T PRK15453         84 REYGE   88 (290)
T ss_pred             HHHhc
Confidence            66544

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=96.10  E-value=0.005  Score=50.56  Aligned_cols=20  Identities=50%  Similarity=0.619  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLH   22 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~   22 (424)
                      .|+|+|.+|+||||+++.+.
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH
Confidence            68999999999999999998

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.10  E-value=0.0053  Score=51.35  Aligned_cols=23  Identities=43%  Similarity=0.723  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhc
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      |.|+|.+|+|||||++++++...
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l~   24 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEELK   24 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhh
Confidence            68999999999999999999884

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=96.09  E-value=0.013  Score=50.69  Aligned_cols=41  Identities=34%  Similarity=0.404  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN   44 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~   44 (424)
                      +|+|+|-||+||||+|.-++.+...+..| .++-|+...+.+
T Consensus         2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~n   42 (255)
T COG3640           2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSN   42 (255)
T ss_pred             eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCC
Confidence            68999999999999999977766433333 355667666554

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=96.09  E-value=0.0076  Score=51.45  Aligned_cols=45  Identities=18%  Similarity=0.119  Sum_probs=32.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEI   51 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~   51 (424)
                      ++.|.|++|+|||+++.+++....  ..-..++|++...  +.+++.+.
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~--~~~~~~~~   45 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEE--SPEELIEN   45 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCC--CHHHHHHH
Confidence            468999999999999999988763  3335578887643  34444443

A related protein is found in archaea.

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.09  E-value=0.06  Score=47.23  Aligned_cols=131  Identities=15%  Similarity=0.208  Sum_probs=68.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh----ccC
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL----NDR   79 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~   79 (424)
                      +..+|++|+|||-+|+..+...  ...|-..     .                +.+--..-.++.++.++..+    ...
T Consensus       208 vLmYGPPGTGKTlmARAcAaqT--~aTFLKL-----A----------------gPQLVQMfIGdGAkLVRDAFaLAKEka  264 (424)
T KOG0652|consen  208 VLMYGPPGTGKTLMARACAAQT--NATFLKL-----A----------------GPQLVQMFIGDGAKLVRDAFALAKEKA  264 (424)
T ss_pred             eEeeCCCCCcHHHHHHHHHHhc--cchHHHh-----c----------------chHHHhhhhcchHHHHHHHHHHhhccC
Confidence            6789999999999999988866  3333111     0                11111111222333344333    235


Q ss_pred             cEEEEEcCCCCc--------------------chhhhh-ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCC
Q 037045           80 SYVLFLDGVSSE--------------------INFKEI-GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLC  131 (424)
Q Consensus        80 ~~LlvlD~~~~~--------------------~~~~~~-~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~  131 (424)
                      ++++.+|.++-.                    +.+.++ +|. ....-|||..|..-++..       .-+..+++..-+
T Consensus       265 P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs-s~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pn  343 (424)
T KOG0652|consen  265 PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS-SDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPN  343 (424)
T ss_pred             CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC-CccceEEEeecccccccCHHHhhcccccccccCCCCC
Confidence            899999997642                    113333 333 233457776665443333       455666666555


Q ss_pred             HHHHHHHHHHHhccc-CCCCccHHHHHH
Q 037045          132 QREAKKLFWEVVGVH-LKKYPDIELVAD  158 (424)
Q Consensus       132 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~  158 (424)
                      ++.-..+++-+.-+- ..+.-.+++.++
T Consensus       344 e~aRarIlQIHsRKMnv~~DvNfeELaR  371 (424)
T KOG0652|consen  344 EEARARILQIHSRKMNVSDDVNFEELAR  371 (424)
T ss_pred             hHHHHHHHHHhhhhcCCCCCCCHHHHhh
Confidence            554445555444332 334445555444

>PRK00625 shikimate kinase; Provisional

Probab=96.08  E-value=0.006  Score=51.31  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|.|+|+.|+||||+++.+++..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l   24 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFL   24 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999999987

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=96.06  E-value=0.0058  Score=50.28  Aligned_cols=26  Identities=38%  Similarity=0.479  Sum_probs=24.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      ++|++|+|..|+|||||..++.....
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~   27 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLK   27 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHH
Confidence            57999999999999999999999984

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=96.06  E-value=0.093  Score=45.86  Aligned_cols=27  Identities=26%  Similarity=0.609  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCC
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRF   31 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f   31 (424)
                      =|.++|++|+|||-||+.+++..  ...|
T Consensus       191 gvllygppg~gktml~kava~~t--~a~f  217 (408)
T KOG0727|consen  191 GVLLYGPPGTGKTMLAKAVANHT--TAAF  217 (408)
T ss_pred             ceEEeCCCCCcHHHHHHHHhhcc--chhe
Confidence            36789999999999999999987  4444

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=96.06  E-value=0.01  Score=54.07  Aligned_cols=42  Identities=24%  Similarity=0.442  Sum_probs=32.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN   44 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~   44 (424)
                      |++|+|.|-||+||||++..++....  ..-..++-|++....+
T Consensus         1 m~~iav~~KGGvGKTT~~~nLA~~La--~~G~kVlliD~Dpq~n   42 (270)
T cd02040           1 MRQIAIYGKGGIGKSTTTQNLSAALA--EMGKKVMIVGCDPKAD   42 (270)
T ss_pred             CcEEEEEeCCcCCHHHHHHHHHHHHH--hCCCeEEEEEcCCCCC
Confidence            68899999999999999999999884  2223466677665543

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.06  E-value=0.11  Score=52.55  Aligned_cols=145  Identities=14%  Similarity=0.139  Sum_probs=76.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      .++.++|.+|+||||+++.+++..  ..|+   +-+++..          +..    +....++......+.+.-+...+
T Consensus       432 ~~vLLhG~~g~GK~t~V~~vas~l--g~h~---~evdc~e----------l~~----~s~~~~etkl~~~f~~a~~~~pa  492 (953)
T KOG0736|consen  432 PSVLLHGPPGSGKTTVVRAVASEL--GLHL---LEVDCYE----------LVA----ESASHTETKLQAIFSRARRCSPA  492 (953)
T ss_pred             eEEEEeCCCCCChHHHHHHHHHHh--CCce---EeccHHH----------Hhh----cccchhHHHHHHHHHHHhhcCce
Confidence            468899999999999999999988  3433   2222111          000    00011111111112222223455


Q ss_pred             EEEEcCCCCc-------c------hhhhh-c---cCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHHHH
Q 037045           82 VLFLDGVSSE-------I------NFKEI-G---MHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKKLF  139 (424)
Q Consensus        82 LlvlD~~~~~-------~------~~~~~-~---~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~l~  139 (424)
                      +|.+-|++-.       .      .++.+ .   ++...++.-++.|+.+..-.+     .....++++.+++++-.++|
T Consensus       493 vifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iL  572 (953)
T KOG0736|consen  493 VLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEIL  572 (953)
T ss_pred             EEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHH
Confidence            6666655421       1      11111 1   122223333444444433222     55677889999999999999


Q ss_pred             HHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          140 WEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      +.+.....   -..+...+.++++|.|+-
T Consensus       573 q~y~~~~~---~n~~v~~k~~a~~t~gfs  598 (953)
T KOG0736|consen  573 QWYLNHLP---LNQDVNLKQLARKTSGFS  598 (953)
T ss_pred             HHHHhccc---cchHHHHHHHHHhcCCCC
Confidence            99886542   111234456777777764

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=96.05  E-value=0.09  Score=49.68  Aligned_cols=129  Identities=19%  Similarity=0.286  Sum_probs=68.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhcc------CCCCceEEEEE------eccCCCHHHHHHHH-----------HHHhcc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGE------SRRFDIIFWEN------INTDGNIRDIQEII-----------LERLKV   58 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~------~~~f~~~~wv~------~~~~~~~~~~~~~i-----------~~~l~~   58 (424)
                      +-|+|+|+.|+||+||.+-+.-....      +.+--.+=|++      +....++...+...           +-.++.
T Consensus       614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL  693 (807)
T KOG0066|consen  614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGL  693 (807)
T ss_pred             ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhh
Confidence            45899999999999999998876543      12222345554      22222333322211           111222


Q ss_pred             cc-------cccChhHHHH-HHHHHhccCcEEEEEcCCCCcchhhhh-ccC---CCCCCcEEEEEecchhhhcccCceEE
Q 037045           59 NA-------KELNNDLRAD-IISKELNDRSYVLFLDGVSSEINFKEI-GMH---DDHGRGKVVFACRSREFCWQADGVIH  126 (424)
Q Consensus        59 ~~-------~~~~~~~~~~-~l~~~l~~~~~LlvlD~~~~~~~~~~~-~~~---~~~~~~~iiittr~~~~~~~~~~~~~  126 (424)
                      ..       ...+-.+... .+.+..-+.+=+||+|.-.+..+++.+ ++.   ....|..|+|+--.+-+..+...-+.
T Consensus       694 ~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwV  773 (807)
T KOG0066|consen  694 ASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWV  773 (807)
T ss_pred             hhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEE
Confidence            11       1122222222 233333456778999998877776666 222   44556655555544444445555555


Q ss_pred             ecCC
Q 037045          127 VQQL  130 (424)
Q Consensus       127 l~~l  130 (424)
                      ++.-
T Consensus       774 vE~Q  777 (807)
T KOG0066|consen  774 VENQ  777 (807)
T ss_pred             EccC
Confidence            5543

>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]

Probab=96.05  E-value=0.2  Score=47.05  Aligned_cols=59  Identities=19%  Similarity=0.037  Sum_probs=42.2

Q ss_pred             ccCceEEecCCCHHHHHHHHHHHhccc-CCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045          120 QADGVIHVQQLCQREAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMPYMLKLIGKEL  178 (424)
Q Consensus       120 ~~~~~~~l~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l  178 (424)
                      ....+++++..+.+|+.+++..+.... ......-++-.+++.-...|+|-.+..++..+
T Consensus       401 qpf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~  460 (461)
T KOG3928|consen  401 QPFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL  460 (461)
T ss_pred             cCcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence            556678999999999999998887655 11111224456778888899997777776654

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.04  E-value=0.0094  Score=52.75  Aligned_cols=52  Identities=21%  Similarity=0.229  Sum_probs=31.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhcc-----CCCCceEEEEEeccCCCHHHHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGE-----SRRFDIIFWENINTDGNIRDIQEIILE   54 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~   54 (424)
                      +..|+|++|+|||+++..+......     .......+-+....+..++.+++.+.+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~   75 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK   75 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence            4789999999999888888877721     133344444454555456666655544

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=96.04  E-value=0.0067  Score=49.37  Aligned_cols=25  Identities=36%  Similarity=0.474  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +++++|+|.+|+||||+.+.+.+..
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l   28 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKEL   28 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHH
Confidence            3689999999999999999988876

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.03  E-value=0.0058  Score=53.14  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|++|+|||||++.++...
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            479999999999999999999976

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=96.03  E-value=0.013  Score=55.41  Aligned_cols=75  Identities=24%  Similarity=0.376  Sum_probs=44.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL   83 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll   83 (424)
                      +-|||..|.|||-|+-.+|+...++..-  ++.        --.+..++.+.+..-.   ........+.+.+.++..||
T Consensus        65 lYl~G~vG~GKT~Lmd~f~~~lp~~~k~--R~H--------Fh~Fm~~vh~~l~~~~---~~~~~l~~va~~l~~~~~lL  131 (362)
T PF03969_consen   65 LYLWGPVGRGKTMLMDLFYDSLPIKRKR--RVH--------FHEFMLDVHSRLHQLR---GQDDPLPQVADELAKESRLL  131 (362)
T ss_pred             EEEECCCCCchhHHHHHHHHhCCccccc--ccc--------ccHHHHHHHHHHHHHh---CCCccHHHHHHHHHhcCCEE
Confidence            6789999999999999999998652211  101        0122223322222111   12223445556666778899


Q ss_pred             EEcCCCCc
Q 037045           84 FLDGVSSE   91 (424)
Q Consensus        84 vlD~~~~~   91 (424)
                      .||+++-.
T Consensus       132 cfDEF~V~  139 (362)
T PF03969_consen  132 CFDEFQVT  139 (362)
T ss_pred             EEeeeecc
Confidence            99996543

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=96.02  E-value=0.051  Score=52.34  Aligned_cols=24  Identities=33%  Similarity=0.404  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .++|.|++|+||||||+.+.--+.
T Consensus       364 ~lgIIGPSgSGKSTLaR~lvG~w~  387 (580)
T COG4618         364 ALGIIGPSGSGKSTLARLLVGIWP  387 (580)
T ss_pred             eEEEECCCCccHHHHHHHHHcccc
Confidence            689999999999999999987663

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.01  E-value=0.0071  Score=48.10  Aligned_cols=26  Identities=35%  Similarity=0.611  Sum_probs=23.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhcc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGE   27 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~   27 (424)
                      .+|.+.|.-|+||||+++.+++....
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            37999999999999999999998753

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=96.01  E-value=0.013  Score=48.20  Aligned_cols=24  Identities=33%  Similarity=0.374  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +|.++|.+|.||||+|..+.+...
T Consensus        25 viW~TGLSGsGKSTiA~ale~~L~   48 (197)
T COG0529          25 VIWFTGLSGSGKSTIANALEEKLF   48 (197)
T ss_pred             EEEeecCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999999883

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=96.01  E-value=0.028  Score=50.13  Aligned_cols=76  Identities=17%  Similarity=0.107  Sum_probs=43.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC--HHHHHHHHHHHh----ccc---ccccChhHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN--IRDIQEIILERL----KVN---AKELNNDLRADIIS   73 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l----~~~---~~~~~~~~~~~~l~   73 (424)
                      +|+|.|.+|+||||+++.+.+...  ..-..+..++......  ....-+.+....    ...   ....+.+.+.+.++
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~--~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~   78 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFA--REGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR   78 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH--hcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence            589999999999999999998873  2222344555433322  222222222221    111   24555666666666


Q ss_pred             HHhccCc
Q 037045           74 KELNDRS   80 (424)
Q Consensus        74 ~~l~~~~   80 (424)
                      ...+++.
T Consensus        79 ~L~~g~~   85 (277)
T cd02029          79 TYGETGR   85 (277)
T ss_pred             HHHcCCC
Confidence            6655543

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=96.01  E-value=0.01  Score=53.80  Aligned_cols=48  Identities=19%  Similarity=0.224  Sum_probs=37.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIIL   53 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~   53 (424)
                      +++.|.|.+|+|||+++.++....  ......++||+....  .+++.+...
T Consensus        24 ~~~lI~G~pGsGKT~f~~qfl~~~--~~~ge~vlyvs~~e~--~~~l~~~~~   71 (260)
T COG0467          24 SVVLITGPPGTGKTIFALQFLYEG--AREGEPVLYVSTEES--PEELLENAR   71 (260)
T ss_pred             cEEEEEcCCCCcHHHHHHHHHHHH--HhcCCcEEEEEecCC--HHHHHHHHH
Confidence            578999999999999999999988  455778999887664  444444443

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.01  E-value=0.024  Score=56.16  Aligned_cols=47  Identities=13%  Similarity=0.085  Sum_probs=34.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEII   52 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i   52 (424)
                      +++.|.|++|+|||||+.+++....  .+-..++|+..-  .+.+++.+..
T Consensus       264 s~~li~G~~G~GKt~l~~~f~~~~~--~~ge~~~y~s~e--Es~~~i~~~~  310 (484)
T TIGR02655       264 SIILATGATGTGKTLLVSKFLENAC--ANKERAILFAYE--ESRAQLLRNA  310 (484)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEee--CCHHHHHHHH
Confidence            4788999999999999999999873  344567776644  3455555543

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=96.00  E-value=0.017  Score=49.69  Aligned_cols=25  Identities=36%  Similarity=0.385  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|+.|+||||+++.+++...
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~   25 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLE   25 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3789999999999999999999884

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK13768 GTPase; Provisional

Probab=96.00  E-value=0.011  Score=53.30  Aligned_cols=37  Identities=24%  Similarity=0.257  Sum_probs=27.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEe
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENI   39 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~   39 (424)
                      +.+++|.|++|+||||++..+.....  ..-..++.++.
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l~--~~g~~v~~i~~   38 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWLE--EQGYDVAIVNL   38 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHH--hcCCceEEEEC
Confidence            46889999999999999999998874  22234555554

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=96.00  E-value=0.05  Score=56.97  Aligned_cols=106  Identities=14%  Similarity=0.194  Sum_probs=58.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc-------c-------CCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG-------E-------SRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDL   67 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~-------~-------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~   67 (424)
                      +++.|+|+.+.||||+.+.++-..-       +       -..|+. ++..++...++..-...+...+.         +
T Consensus       328 ~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStfS~~m~---------~  397 (782)
T PRK00409        328 TVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTFSGHMT---------N  397 (782)
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhHHHHHHH---------H
Confidence            4789999999999999998875420       0       112332 34455544343332322222211         1


Q ss_pred             HHHHHHHHhccCcEEEEEcCCCCcchh---hhh--ccC--CCCCCcEEEEEecchhhhc
Q 037045           68 RADIISKELNDRSYVLFLDGVSSEINF---KEI--GMH--DDHGRGKVVFACRSREFCW  119 (424)
Q Consensus        68 ~~~~l~~~l~~~~~LlvlD~~~~~~~~---~~~--~~~--~~~~~~~iiittr~~~~~~  119 (424)
                      ....+. .+ ..+-|+++|+....-+.   ..+  .+.  ....++.+|+||.......
T Consensus       398 ~~~Il~-~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~  454 (782)
T PRK00409        398 IVRILE-KA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKA  454 (782)
T ss_pred             HHHHHH-hC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHH
Confidence            122222 22 46779999998754321   111  111  1234789999999877655

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.00  E-value=0.034  Score=49.11  Aligned_cols=56  Identities=23%  Similarity=0.326  Sum_probs=35.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE---------eccCCCHHH--HHHHHHHHhcccc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN---------INTDGNIRD--IQEIILERLKVNA   60 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~---------~~~~~~~~~--~~~~i~~~l~~~~   60 (424)
                      +|.+.||+|+||||.++++.....  ..+....-|+         .+-+.++.+  -.+++.++.+..+
T Consensus        21 ~ilVvGMAGSGKTTF~QrL~~hl~--~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP   87 (366)
T KOG1532|consen   21 IILVVGMAGSGKTTFMQRLNSHLH--AKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP   87 (366)
T ss_pred             EEEEEecCCCCchhHHHHHHHHHh--hccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence            678889999999999999999884  3333222222         222344444  3456666665444

>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.99  E-value=0.029  Score=52.72  Aligned_cols=84  Identities=20%  Similarity=0.308  Sum_probs=58.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccc--------cccCh-----hHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNA--------KELNN-----DLR   68 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~--------~~~~~-----~~~   68 (424)
                      -|+|+..+|+|||||..++++..    .+|.++---++. ...+.++.++.+..-+...        +....     ...
T Consensus       165 RiGIFAgsGVGKStLLgMiar~t----~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~  240 (441)
T COG1157         165 RIGIFAGSGVGKSTLLGMIARNT----EADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFT  240 (441)
T ss_pred             eeEEEecCCCcHHHHHHHHhccc----cCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHH
Confidence            58999999999999999999954    566644444444 6788889888887765443        11111     122


Q ss_pred             HHHHHHHhc--cCcEEEEEcCCCC
Q 037045           69 ADIISKELN--DRSYVLFLDGVSS   90 (424)
Q Consensus        69 ~~~l~~~l~--~~~~LlvlD~~~~   90 (424)
                      +..+.++++  ++++|+++|-+..
T Consensus       241 At~IAEyFRDqG~~VLL~mDSlTR  264 (441)
T COG1157         241 ATTIAEYFRDQGKRVLLIMDSLTR  264 (441)
T ss_pred             HHHHHHHHHhCCCeEEEEeecHHH
Confidence            345566664  5799999999854

>PRK14737 gmk guanylate kinase; Provisional

Probab=95.99  E-value=0.0061  Score=51.97  Aligned_cols=24  Identities=33%  Similarity=0.343  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|.|.|++|+|||||++.+.+..
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            589999999999999999999865

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=95.98  E-value=0.021  Score=50.55  Aligned_cols=47  Identities=15%  Similarity=0.098  Sum_probs=32.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEII   52 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i   52 (424)
                      .++.|.|++|+||||++.+++....  ..-..++|++  ...+.+++.+.+
T Consensus        25 ~~~~i~G~~G~GKTtl~~~~~~~~~--~~g~~~~yi~--~e~~~~~~~~~~   71 (230)
T PRK08533         25 SLILIEGDESTGKSILSQRLAYGFL--QNGYSVSYVS--TQLTTTEFIKQM   71 (230)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEEe--CCCCHHHHHHHH
Confidence            4789999999999999877777652  2224567776  333556666665

>PRK12678 transcription termination factor Rho; Provisional

Probab=95.98  E-value=0.017  Score=56.87  Aligned_cols=88  Identities=19%  Similarity=0.243  Sum_probs=49.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCce-EEEEEecc-CCCHHHHHHHHHHHhcccc-c-----ccChhHHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDI-IFWENINT-DGNIRDIQEIILERLKVNA-K-----ELNNDLRADIISK   74 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~-~-----~~~~~~~~~~l~~   74 (424)
                      -..|+|++|+|||||++++++... ..+.+. ++.+-++. +..+.++.+.+-.++-... +     ........-.+.+
T Consensus       418 R~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae  496 (672)
T PRK12678        418 RGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAK  496 (672)
T ss_pred             EeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            368999999999999999998664 233444 33444554 3445455444311111111 1     1111112222333


Q ss_pred             Hh--ccCcEEEEEcCCCCc
Q 037045           75 EL--NDRSYVLFLDGVSSE   91 (424)
Q Consensus        75 ~l--~~~~~LlvlD~~~~~   91 (424)
                      .+  .++.+||++|++...
T Consensus       497 ~fre~G~dVlillDSlTR~  515 (672)
T PRK12678        497 RLVELGKDVVVLLDSITRL  515 (672)
T ss_pred             HHHHcCCCEEEEEeCchHH
Confidence            34  468999999998653

>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []

Probab=95.96  E-value=0.35  Score=43.77  Aligned_cols=160  Identities=13%  Similarity=0.110  Sum_probs=85.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC--CCHHHHHHHHHHHhccc---------------------
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD--GNIRDIQEIILERLKVN---------------------   59 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~---------------------   59 (424)
                      +..|+|+.|+||+.|.+.+.....+....+.|+||.-...  .-.+....+..-.-+.-                     
T Consensus        89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~Fv~  168 (369)
T PF02456_consen   89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPKFVE  168 (369)
T ss_pred             EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccccccccee
Confidence            4678899999999999999988877777788999863222  12222222221111100                     


Q ss_pred             --------ccccChhHHHHHHHHHhccCcEEEEEcCCCC----cchhhhh--ccC----CCCC---CcEEEEEecchhhh
Q 037045           60 --------AKELNNDLRADIISKELNDRSYVLFLDGVSS----EINFKEI--GMH----DDHG---RGKVVFACRSREFC  118 (424)
Q Consensus        60 --------~~~~~~~~~~~~l~~~l~~~~~LlvlD~~~~----~~~~~~~--~~~----~~~~---~~~iiittr~~~~~  118 (424)
                              +..-+.+.....+.+.-+...+-||+|+.-+    ...+..+  ++|    ...+   |-.|+|.-.+-.-.
T Consensus       169 msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe~Lg~~~~is~fFHAlPSKL~~rfp~CTgy~VfVVLHNmnPR  248 (369)
T PF02456_consen  169 MSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECMEKLGSHKSISKFFHALPSKLHDRFPKCTGYYVFVVLHNMNPR  248 (369)
T ss_pred             ecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHHHhcCCCChhHHHhcCcHHHhhhccCCceeEEEEEeccCCcc
Confidence                    0112222233445555567799999998543    2334444  455    2222   33444433322211


Q ss_pred             c---ccCceEEecCCCHHHHHHHHHHHhccc-CCCCccHHHHHHHHHHhcCCchHHHHHHHH
Q 037045          119 W---QADGVIHVQQLCQREAKKLFWEVVGVH-LKKYPDIELVADSIVKECGGMPYMLKLIGK  176 (424)
Q Consensus       119 ~---~~~~~~~l~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~I~~~~~g~Plai~~~a~  176 (424)
                      .   ++...++++              +.-. ..+....-...+.|-....|+|.+|.++..
T Consensus       249 ~d~gGNI~~LKiq--------------AK~HIiSp~~~p~QlsRFin~yt~glp~~i~~LLK  296 (369)
T PF02456_consen  249 RDIGGNIANLKIQ--------------AKCHIISPKMHPSQLSRFINNYTKGLPTAISLLLK  296 (369)
T ss_pred             cccCCCccchhhh--------------ceeeeecCCCCHHHHHHHHHHhccCCChhHHHHHH
Confidence            1   111111111              1000 223344455778888999999999976664

During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=95.96  E-value=0.0093  Score=52.60  Aligned_cols=43  Identities=23%  Similarity=0.314  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN   44 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~   44 (424)
                      .+|+|+|++|+|||||+..+...+..+.+--+++-|+-+.+++
T Consensus        30 ~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t   72 (266)
T PF03308_consen   30 HVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT   72 (266)
T ss_dssp             EEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred             eEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence            4799999999999999999999986443334566666555554

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.92  E-value=0.019  Score=50.36  Aligned_cols=22  Identities=27%  Similarity=0.572  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.++|++|+|||-+|+.++++.
T Consensus       214 vllygppgtgktl~aravanrt  235 (435)
T KOG0729|consen  214 VLLYGPPGTGKTLCARAVANRT  235 (435)
T ss_pred             eEEeCCCCCchhHHHHHHhccc
Confidence            6789999999999999999987

>PRK05439 pantothenate kinase; Provisional

Probab=95.92  E-value=0.043  Score=50.50  Aligned_cols=23  Identities=35%  Similarity=0.407  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|+|.|.+|+||||+|+.+....
T Consensus        88 iIgIaG~~gsGKSTla~~L~~~l  110 (311)
T PRK05439         88 IIGIAGSVAVGKSTTARLLQALL  110 (311)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999999998866

>PRK01184 hypothetical protein; Provisional

Probab=95.91  E-value=0.0074  Score=51.48  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=20.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.+|+|+|++|+||||+++ +++..
T Consensus         1 ~~~i~l~G~~GsGKsT~a~-~~~~~   24 (184)
T PRK01184          1 MKIIGVVGMPGSGKGEFSK-IAREM   24 (184)
T ss_pred             CcEEEEECCCCCCHHHHHH-HHHHc
Confidence            5789999999999999987 55543

>PRK14529 adenylate kinase; Provisional

Probab=95.91  E-value=0.02  Score=50.19  Aligned_cols=83  Identities=23%  Similarity=0.354  Sum_probs=45.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCce--EEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccC-c
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDI--IFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDR-S   80 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-~   80 (424)
                      |.|.|++|+||||+++.+++.+.. .+.+.  ++.-.+..........++++..    ....+.+.....+.+.+.+. .
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~~~-~~is~gdllr~~i~~~t~lg~~i~~~i~~----G~lvpdei~~~lv~~~l~~~~~   77 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKYDL-AHIESGAIFREHIGGGTELGKKAKEYIDR----GDLVPDDITIPMILETLKQDGK   77 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC-CCcccchhhhhhccCCChHHHHHHHHHhc----cCcchHHHHHHHHHHHHhccCC
Confidence            788999999999999999998842 22221  1111222222222223333222    22233333445555555432 4


Q ss_pred             EEEEEcCCCCc
Q 037045           81 YVLFLDGVSSE   91 (424)
Q Consensus        81 ~LlvlD~~~~~   91 (424)
                      --+|||++=..
T Consensus        78 ~g~iLDGfPRt   88 (223)
T PRK14529         78 NGWLLDGFPRN   88 (223)
T ss_pred             CcEEEeCCCCC
Confidence            56899997554

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.91  E-value=0.0074  Score=45.89  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLH   22 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~   22 (424)
                      .+++|.|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            468999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=95.91  E-value=0.021  Score=48.68  Aligned_cols=25  Identities=32%  Similarity=0.421  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+++|.|.+|+||||+|+.+.....
T Consensus        19 ~~i~i~G~~GsGKstla~~l~~~l~   43 (184)
T TIGR00455        19 VVIWLTGLSGSGKSTIANALEKKLE   43 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999998873

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK14528 adenylate kinase; Provisional

Probab=95.90  E-value=0.0083  Score=51.27  Aligned_cols=25  Identities=40%  Similarity=0.567  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+.|.|.|++|+||||+|+.+++..
T Consensus         1 ~~~i~i~G~pGsGKtt~a~~la~~~   25 (186)
T PRK14528          1 MKNIIFMGPPGAGKGTQAKILCERL   25 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            5779999999999999999998876

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.90  E-value=0.01  Score=51.58  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +++|+|++|+|||||++.++--.
T Consensus        35 ~lgivGeSGsGKSTL~r~l~Gl~   57 (252)
T COG1124          35 TLGIVGESGSGKSTLARLLAGLE   57 (252)
T ss_pred             EEEEEcCCCCCHHHHHHHHhccc
Confidence            68999999999999999998655

>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A

Probab=95.90  E-value=0.071  Score=49.54  Aligned_cols=47  Identities=26%  Similarity=0.422  Sum_probs=36.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIIL   53 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~   53 (424)
                      .++|.|..|+|||+|++++++..    +-+.++++-++.. ....++++++-
T Consensus       159 r~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~  206 (369)
T cd01134         159 TAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFP  206 (369)
T ss_pred             EEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence            57899999999999999999865    3357888888774 45666666654

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.

>PRK14530 adenylate kinase; Provisional

Probab=95.89  E-value=0.0077  Score=52.83  Aligned_cols=24  Identities=33%  Similarity=0.483  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +.|+|.|++|+||||+|+.+++..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~   27 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEF   27 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            358999999999999999999877

>PTZ00494 tuzin-like protein; Provisional

Probab=95.89  E-value=0.39  Score=45.97  Aligned_cols=133  Identities=12%  Similarity=0.116  Sum_probs=80.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHH-------
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISK-------   74 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~-------   74 (424)
                      +|+++.|.-|.||++|.+.......     -..++|++....+   -++.+.+.++.+..+.- ++..+.+.+       
T Consensus       396 RIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~ED---tLrsVVKALgV~nve~C-GDlLdFI~ea~~~A~~  466 (664)
T PTZ00494        396 RIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGTED---TLRSVVRALGVSNVEVC-GDLLGFVEEAMRGATV  466 (664)
T ss_pred             cEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCCcc---hHHHHHHHhCCCChhhh-ccHHHHHHHHHHHHHH
Confidence            7899999999999999999887552     1357888887644   46677778887651111 112222222       


Q ss_pred             HhccCcEEEEEc--CCCCcc-hhhhh-ccCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHHHHHHHh
Q 037045           75 ELNDRSYVLFLD--GVSSEI-NFKEI-GMHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKKLFWEVV  143 (424)
Q Consensus        75 ~l~~~~~LlvlD--~~~~~~-~~~~~-~~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~l~~~~~  143 (424)
                      ...++.=+||+-  +-.+.. ...+. .+.....-|.|++---.+....     ..-..|.+..|+.++|.++-++..
T Consensus       467 ~~~g~~P~lVlkLREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l  544 (664)
T PTZ00494        467 KASDGVPFLVMRLREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL  544 (664)
T ss_pred             hcCCCCCEEEEEeccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence            233444344442  222221 22222 3335666788886544433332     444567788999999999987766

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=95.89  E-value=0.029  Score=54.01  Aligned_cols=86  Identities=13%  Similarity=0.237  Sum_probs=48.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccc-------------cccChhH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNA-------------KELNNDL   67 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------------~~~~~~~   67 (424)
                      ..++|.|+.|+|||||++.++....    .+..+...++. ..+..++..+.+..-+...             ......+
T Consensus       156 Q~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e  231 (434)
T PRK07196        156 QRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATE  231 (434)
T ss_pred             eEEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHH
Confidence            4689999999999999999887552    23332233332 2334444444433322211             1111122


Q ss_pred             HHHHHHHHh--ccCcEEEEEcCCCCc
Q 037045           68 RADIISKEL--NDRSYVLFLDGVSSE   91 (424)
Q Consensus        68 ~~~~l~~~l--~~~~~LlvlD~~~~~   91 (424)
                      ....+.+.+  +++++|+++|++-..
T Consensus       232 ~a~~iAEyfr~~g~~Vll~~Dsltr~  257 (434)
T PRK07196        232 LCHAIATYYRDKGHDVLLLVDSLTRY  257 (434)
T ss_pred             HHHHHHHHhhhccCCEEEeecchhHH
Confidence            233444444  357999999998653

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=95.88  E-value=0.006  Score=50.90  Aligned_cols=22  Identities=36%  Similarity=0.619  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.|.|++|+||||+|+.+....
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l   22 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRL   22 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhc
Confidence            4689999999999999999886

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK13975 thymidylate kinase; Provisional

Probab=95.88  E-value=0.008  Score=51.82  Aligned_cols=25  Identities=36%  Similarity=0.315  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|+.|+||||+++.+++...
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999999884

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=95.87  E-value=0.012  Score=47.48  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .|.|+|..|+||+++|+.++....
T Consensus        23 pvli~GE~GtGK~~~A~~lh~~~~   46 (138)
T PF14532_consen   23 PVLITGEPGTGKSLLARALHRYSG   46 (138)
T ss_dssp             -EEEECCTTSSHHHHHHCCHHTTT
T ss_pred             cEEEEcCCCCCHHHHHHHHHhhcC
Confidence            478999999999999999998763

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=95.86  E-value=0.0079  Score=47.00  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhc
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      |.|.|..|+|||||.+.++....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~~   24 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGEF   24 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS-
T ss_pred             EEEECcCCCCHHHHHHHHhcCCC
Confidence            78999999999999999998764

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=95.86  E-value=0.01  Score=54.29  Aligned_cols=40  Identities=25%  Similarity=0.497  Sum_probs=29.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD   42 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~   42 (424)
                      |++|+|+|-||+||||++..++.....  .-..++-|+....
T Consensus         1 ~~~i~~~gKGGVGKTT~a~nLA~~La~--~G~rVLliD~Dpq   40 (279)
T PRK13230          1 MRKFCFYGKGGIGKSTTVCNIAAALAE--SGKKVLVVGCDPK   40 (279)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHh--CCCEEEEEeeCCc
Confidence            678999999999999999999988842  2223555554443

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=95.84  E-value=0.032  Score=53.70  Aligned_cols=87  Identities=17%  Similarity=0.180  Sum_probs=51.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc-------cccCh------hHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA-------KELNN------DLR   68 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~------~~~   68 (424)
                      ..++|.|..|+|||||++.++...+  . ...++...-....+..++++..+..-+...       ...+.      ...
T Consensus       157 qri~I~G~sG~GKTtLl~~Ia~~~~--~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~  233 (432)
T PRK06793        157 QKIGIFAGSGVGKSTLLGMIAKNAK--A-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKL  233 (432)
T ss_pred             cEEEEECCCCCChHHHHHHHhccCC--C-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHH
Confidence            3689999999999999999998662  1 223443333334677777776655432211       11111      111


Q ss_pred             HHHHHHHh--ccCcEEEEEcCCCCc
Q 037045           69 ADIISKEL--NDRSYVLFLDGVSSE   91 (424)
Q Consensus        69 ~~~l~~~l--~~~~~LlvlD~~~~~   91 (424)
                      ...+.+++  +++++|+++|++-..
T Consensus       234 a~~iAEyfr~~G~~VLlilDslTr~  258 (432)
T PRK06793        234 ATSIAEYFRDQGNNVLLMMDSVTRF  258 (432)
T ss_pred             HHHHHHHHHHcCCcEEEEecchHHH
Confidence            12233333  368999999998764

>PTZ00185 ATPase alpha subunit; Provisional

Probab=95.84  E-value=0.066  Score=52.18  Aligned_cols=88  Identities=16%  Similarity=0.150  Sum_probs=51.8

Q ss_pred             EEEEEcCCCCcHHHHH-HHHHHhhcc-----CCCCceEEEEEeccCCCHHHHHHHHHHHhc-ccc-------cccChhH-
Q 037045            3 KICIWGPLGVGKTTIM-ENLHHSIGE-----SRRFDIIFWENINTDGNIRDIQEIILERLK-VNA-------KELNNDL-   67 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa-~~~~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~-------~~~~~~~-   67 (424)
                      -++|.|..|+|||+|| ..+.+....     ...-+.++++-+++..+--.-+.+.+.+-+ ...       ...+... 
T Consensus       191 R~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r  270 (574)
T PTZ00185        191 RELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQ  270 (574)
T ss_pred             EEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHH
Confidence            4689999999999997 666666522     124467889998886543332444444433 111       1111111 


Q ss_pred             -----HHHHHHHHh--ccCcEEEEEcCCCC
Q 037045           68 -----RADIISKEL--NDRSYVLFLDGVSS   90 (424)
Q Consensus        68 -----~~~~l~~~l--~~~~~LlvlD~~~~   90 (424)
                           ....+.+.+  +++.+|+|+||+..
T Consensus       271 ~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr  300 (574)
T PTZ00185        271 YLAPYSGVTMGEYFMNRGRHCLCVYDDLSK  300 (574)
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence                 112333333  46899999999865

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=95.84  E-value=0.011  Score=52.43  Aligned_cols=34  Identities=26%  Similarity=0.428  Sum_probs=23.2

Q ss_pred             EEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            6 IWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         6 I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      |.|++|+||||+++.+.+...  ..-..++-|++.+
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~--~~~~~~~~vNLDP   34 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLE--SNGRDVYIVNLDP   34 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHT--TT-S-EEEEE--T
T ss_pred             CCCCCCCCHHHHHHHHHHHHH--hccCCceEEEcch
Confidence            689999999999999999984  3334455555433

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=95.83  E-value=0.008  Score=56.05  Aligned_cols=25  Identities=28%  Similarity=0.663  Sum_probs=23.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +++.|+|++|+||||||+.+++...
T Consensus        79 ~il~L~GPPGsGKStla~~La~~l~  103 (361)
T smart00763       79 QILYLLGPVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5789999999999999999999984

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]

Probab=95.83  E-value=0.021  Score=52.60  Aligned_cols=88  Identities=20%  Similarity=0.334  Sum_probs=54.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHh--cccc---cccCh--------hH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERL--KVNA---KELNN--------DL   67 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l--~~~~---~~~~~--------~~   67 (424)
                      ..|++.|.+|+|||.+.+++.+... +.+-...+|.-++. ...-.++..++.+.=  ....   ..+++        .-
T Consensus       148 gKiGLFGGAGVGKTVl~~ELI~Nia-~~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RVal  226 (468)
T COG0055         148 GKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVAL  226 (468)
T ss_pred             ceeeeeccCCccceeeHHHHHHHHH-HHcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeehh
Confidence            3589999999999999999999884 34445577877776 345556666654431  1111   11111        11


Q ss_pred             HHHHHHHHhc---cCcEEEEEcCCCC
Q 037045           68 RADIISKELN---DRSYVLFLDGVSS   90 (424)
Q Consensus        68 ~~~~l~~~l~---~~~~LlvlD~~~~   90 (424)
                      ..-.+.+.++   ++.+|+.+||+-.
T Consensus       227 tGlT~AEyfRD~~gqdVLlFIDNIfR  252 (468)
T COG0055         227 TGLTMAEYFRDEEGQDVLLFIDNIFR  252 (468)
T ss_pred             hhhhHHHHhhcccCCeEEEEehhhhH
Confidence            1123344444   4689999999754

>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=95.82  E-value=0.016  Score=53.57  Aligned_cols=49  Identities=18%  Similarity=0.265  Sum_probs=37.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHH
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEI   51 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~   51 (424)
                      .+++...|-|||||||+|...+-...  +....++=|+..+..++.+.+..
T Consensus         2 ~riv~f~GKGGVGKTT~aaA~A~~lA--~~g~kvLlvStDPAhsL~d~f~~   50 (322)
T COG0003           2 TRIVFFTGKGGVGKTTIAAATAVKLA--ESGKKVLLVSTDPAHSLGDVFDL   50 (322)
T ss_pred             cEEEEEecCCcccHHHHHHHHHHHHH--HcCCcEEEEEeCCCCchHhhhcc
Confidence            47899999999999999999777774  33355777777777776666654

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=95.82  E-value=0.0085  Score=48.13  Aligned_cols=26  Identities=42%  Similarity=0.604  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      |+-|.+.|..|+|||||++.+.....
T Consensus         1 MkrimliG~~g~GKTTL~q~L~~~~~   26 (143)
T PF10662_consen    1 MKRIMLIGPSGSGKTTLAQALNGEEI   26 (143)
T ss_pred             CceEEEECCCCCCHHHHHHHHcCCCC
Confidence            67899999999999999999988663

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=95.82  E-value=0.0077  Score=51.48  Aligned_cols=24  Identities=33%  Similarity=0.599  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|++|+|||||++.++...
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            378999999999999999998765

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=95.81  E-value=0.016  Score=48.71  Aligned_cols=48  Identities=23%  Similarity=0.448  Sum_probs=36.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCc-eEEEEEeccCCCHHHHHH
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFD-IIFWENINTDGNIRDIQE   50 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~   50 (424)
                      +..|.|-|+.|+|||+|..+.+.+.+  +.|. +++-.++-...+.+.+.+
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~--~~~~~aVI~~Di~t~~Da~~l~~   61 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALK--DEYKIAVITGDIYTKEDADRLRK   61 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHH--hhCCeEEEeceeechhhHHHHHh
Confidence            35789999999999999999999994  5565 355556666556555555

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=95.81  E-value=0.15  Score=51.10  Aligned_cols=41  Identities=17%  Similarity=-0.011  Sum_probs=27.5

Q ss_pred             cEEEEE-ecchhhhc----ccCceEEecCCCHHHHHHHHHHHhccc
Q 037045          106 GKVVFA-CRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVH  146 (424)
Q Consensus       106 ~~iiit-tr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~  146 (424)
                      .++|.+ |++.....    .....+.+.+++.+|..+++++.+.+.
T Consensus       234 ~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~  279 (531)
T TIGR02902       234 FRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKI  279 (531)
T ss_pred             eEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHc
Confidence            356654 44333222    555678899999999999998877543

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PLN02924 thymidylate kinase

Probab=95.80  E-value=0.045  Score=47.99  Aligned_cols=26  Identities=23%  Similarity=0.130  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhcc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGE   27 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~   27 (424)
                      .+|+|-|+.|+||||+++.+++....
T Consensus        17 ~~IviEGiDGsGKsTq~~~L~~~l~~   42 (220)
T PLN02924         17 ALIVLEGLDRSGKSTQCAKLVSFLKG   42 (220)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            37999999999999999999999963

>PRK14527 adenylate kinase; Provisional

Probab=95.80  E-value=0.009  Score=51.30  Aligned_cols=25  Identities=40%  Similarity=0.652  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|.|.|++|+||||+|+.+++...
T Consensus         7 ~~i~i~G~pGsGKsT~a~~La~~~~   31 (191)
T PRK14527          7 KVVIFLGPPGAGKGTQAERLAQELG   31 (191)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999998773

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=95.79  E-value=0.0086  Score=49.29  Aligned_cols=22  Identities=36%  Similarity=0.579  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.|+|++|+||||+|+.+++..
T Consensus         2 i~l~G~~GsGKstla~~la~~l   23 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKAL   23 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999877

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=95.79  E-value=0.0092  Score=51.33  Aligned_cols=24  Identities=33%  Similarity=0.292  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|.|.|.+|+||||+|+.++.+.
T Consensus         4 ~~i~i~G~~G~GKst~a~~l~~~~   27 (197)
T PRK12339          4 TIHFIGGIPGVGKTSISGYIARHR   27 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            478999999999999999999976

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=95.78  E-value=0.0075  Score=50.31  Aligned_cols=21  Identities=43%  Similarity=0.528  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 037045            4 ICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~   24 (424)
                      |+|.|..|+|||||++.+...
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            799999999999999999986

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=95.77  E-value=0.026  Score=48.61  Aligned_cols=25  Identities=36%  Similarity=0.278  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|+.|+||||+++.+.+...
T Consensus         4 ~~IvieG~~GsGKsT~~~~L~~~l~   28 (195)
T TIGR00041         4 MFIVIEGIDGAGKTTQANLLKKLLQ   28 (195)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999884

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK06761 hypothetical protein; Provisional

Probab=95.77  E-value=0.02  Score=51.93  Aligned_cols=25  Identities=36%  Similarity=0.413  Sum_probs=23.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      ++|.|.|++|+||||+++.+++...
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~   28 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILS   28 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcC
Confidence            5799999999999999999999884

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=95.77  E-value=0.038  Score=53.58  Aligned_cols=86  Identities=20%  Similarity=0.235  Sum_probs=47.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHH--hcccc-----cccCh------hHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILER--LKVNA-----KELNN------DLR   68 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~--l~~~~-----~~~~~------~~~   68 (424)
                      ..++|.|..|+|||||++.++.....   -.+++++.--...+..++.++.+..  +....     ...+.      ...
T Consensus       159 q~i~I~G~sG~GKStLl~~I~~~~~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~  235 (438)
T PRK07721        159 QRVGIFAGSGVGKSTLMGMIARNTSA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYT  235 (438)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHH
Confidence            46899999999999999988876521   2244444333344455554432221  11111     11111      111


Q ss_pred             HHHHHHHh--ccCcEEEEEcCCCC
Q 037045           69 ADIISKEL--NDRSYVLFLDGVSS   90 (424)
Q Consensus        69 ~~~l~~~l--~~~~~LlvlD~~~~   90 (424)
                      ...+.+++  +++++|+++|++-.
T Consensus       236 a~~iAEyfr~~g~~Vll~~Dsltr  259 (438)
T PRK07721        236 ATAIAEYFRDQGLNVMLMMDSVTR  259 (438)
T ss_pred             HHHHHHHHHHCCCcEEEEEeChHH
Confidence            12233344  46899999999754

>PRK04196 V-type ATP synthase subunit B; Provisional

Probab=95.76  E-value=0.031  Score=54.42  Aligned_cols=89  Identities=9%  Similarity=0.019  Sum_probs=57.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCC--CCceEEEEEeccC-CCHHHHHHHHHHHhcccc-------cccChhH-----
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESR--RFDIIFWENINTD-GNIRDIQEIILERLKVNA-------KELNNDL-----   67 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~--~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~-----   67 (424)
                      -++|.|..|+|||+|+.++++....++  .--.++++-++.. ....++.+.+...=....       ...+...     
T Consensus       145 R~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~  224 (460)
T PRK04196        145 KLPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTP  224 (460)
T ss_pred             EEEeeCCCCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHH
Confidence            478999999999999999998874321  1125778888764 566777777766422211       1111111     


Q ss_pred             -HHHHHHHHhc---cCcEEEEEcCCCCc
Q 037045           68 -RADIISKELN---DRSYVLFLDGVSSE   91 (424)
Q Consensus        68 -~~~~l~~~l~---~~~~LlvlD~~~~~   91 (424)
                       ....+.+.++   ++++|+++|++...
T Consensus       225 ~~a~tiAEyfr~d~G~~VLli~DslTR~  252 (460)
T PRK04196        225 RMALTAAEYLAFEKGMHVLVILTDMTNY  252 (460)
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEcChHHH
Confidence             1234455665   37999999998653

>PRK03846 adenylylsulfate kinase; Provisional

Probab=95.75  E-value=0.014  Score=50.41  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|.+|+||||+|+.+....
T Consensus        25 ~~i~i~G~~GsGKSTla~~l~~~l   48 (198)
T PRK03846         25 VVLWFTGLSGSGKSTVAGALEEAL   48 (198)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999999976

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=95.75  E-value=0.077  Score=44.98  Aligned_cols=112  Identities=15%  Similarity=0.132  Sum_probs=60.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC---CCHHHHHHHHHHHh-----cccc--cccCh------
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD---GNIRDIQEIILERL-----KVNA--KELNN------   65 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l-----~~~~--~~~~~------   65 (424)
                      ..|.|+|..|.||||.|--++-+..  .+--.+..+.+-+.   ..-...++.+- .+     +...  ...+.      
T Consensus        23 g~v~v~~g~GkGKtt~a~g~a~ra~--g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~~   99 (191)
T PRK05986         23 GLLIVHTGNGKGKSTAAFGMALRAV--GHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIAA   99 (191)
T ss_pred             CeEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHHH
Confidence            3688999999999999999988873  33334444444332   22233333321 11     1100  00111      


Q ss_pred             -hHHHHHHHHHhccCcE-EEEEcCCCCcc-----hhhhh-c-cCCCCCCcEEEEEecchh
Q 037045           66 -DLRADIISKELNDRSY-VLFLDGVSSEI-----NFKEI-G-MHDDHGRGKVVFACRSRE  116 (424)
Q Consensus        66 -~~~~~~l~~~l~~~~~-LlvlD~~~~~~-----~~~~~-~-~~~~~~~~~iiittr~~~  116 (424)
                       ....+..++.+...+| ++|||++-...     +.+++ . +...-.+..||+|-|+..
T Consensus       100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p  159 (191)
T PRK05986        100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP  159 (191)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence             1123344555556666 99999975432     22222 1 123344568999998754

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=95.75  E-value=0.038  Score=53.60  Aligned_cols=86  Identities=21%  Similarity=0.297  Sum_probs=48.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-CCCHHHHHHHHHHHhcccc-------cccChhH------
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-DGNIRDIQEIILERLKVNA-------KELNNDL------   67 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~------   67 (424)
                      ..++|.|.+|+|||||++.++....    .+..+...++. ..+..++.......-+...       ...+...      
T Consensus       164 q~~~I~G~sG~GKStLl~~I~~~~~----~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~~  239 (440)
T TIGR01026       164 QRIGIFAGSGVGKSTLLGMIARNTE----ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAY  239 (440)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHH
Confidence            3689999999999999999887652    23323333333 3355555555443311111       1111111      


Q ss_pred             HHHHHHHHh--ccCcEEEEEcCCCCc
Q 037045           68 RADIISKEL--NDRSYVLFLDGVSSE   91 (424)
Q Consensus        68 ~~~~l~~~l--~~~~~LlvlD~~~~~   91 (424)
                      ..-.+.+.+  +++++|+++|++...
T Consensus       240 ~a~t~AE~frd~G~~Vll~~DslTr~  265 (440)
T TIGR01026       240 VATAIAEYFRDQGKDVLLLMDSVTRF  265 (440)
T ss_pred             HHHHHHHHHHHCCCCEEEEEeChHHH
Confidence            112233344  468999999998653

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.73  E-value=0.015  Score=47.63  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=26.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN   38 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~   38 (424)
                      .++++|++|+||+|+.+.+|..+..+   .+-+|+.
T Consensus        39 CvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~   71 (235)
T COG4778          39 CVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVR   71 (235)
T ss_pred             EEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEE
Confidence            57899999999999999999988432   3456654

>smart00072 GuKc Guanylate kinase homologues

Probab=95.70  E-value=0.012  Score=50.27  Aligned_cols=24  Identities=42%  Similarity=0.731  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|.|.|++|+||+||++.+++..
T Consensus         3 r~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        3 RPIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhcC
Confidence            689999999999999999999986

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PLN02348 phosphoribulokinase

Probab=95.69  E-value=0.039  Score=52.10  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      -+|+|.|.+|+||||+|+.+.+...
T Consensus        50 ~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         50 VVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3899999999999999999999884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	424
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		1e-05
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		4e-05
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-04
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		3e-04

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 314 LDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLP 373
           LDL    I  +  +I +   L  L+L  +   L +LPAEI  L  L +LD+SH ++  LP
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNS--LTELPAEIKNLSNLRVLDLSHNRLTSLP 286
Query: 374 SEIGQLIELKYL 385
           +E+G   +LKY 
Sbjct: 287 AELGSCFQLKYF 298

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 5/101 (4%)
Query: 290 LILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLLQ 348
           LIL G +L+ LP   FD + +L+ L L E  +  LP  +  +L NL   +L  + + L  
Sbjct: 90  LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT--YLNLAHNQLQS 147
Query: 349 LPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRV 387
           LP  +  +L  L  LD+S+ ++Q LP  +  +L +LK LR+
Sbjct: 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 290 LILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLLQ 348
           LIL G +L+ LP   FD + +L+ L L E  +  LP  +  +L NL  L+L  +   L  
Sbjct: 90  LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQ--LQS 147
Query: 349 LPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVS 388
           LP  +  +L  L  LD+ + ++Q LP  +  +L +LK L ++
Sbjct: 148 LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLN 189

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 290 LILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLLQ 348
           L L   +L  LP   FD +  L +LDL    +  LP ++  RL++L  LF+   C+ L +
Sbjct: 69  LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM--CCNKLTE 126
Query: 349 LPAEIGRLQKLEILDVSHTKVQCLP 373
           LP  I RL  L  L +   +++ +P
Sbjct: 127 LPRGIERLTHLTHLALDQNQLKSIP 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	424
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-05
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	1e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-07
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 88.0 bits (217), Expect = 9e-19
 Identities = 81/463 (17%), Positives = 143/463 (30%), Gaps = 115/463 (24%)

Query: 1   MKKICIWGPLGVGKTTIMENLHHSIGESRRFDI-IFWENI---NTDGNIRDIQEIILERL 56
            K + I G LG GKT +  ++  S     + D  IFW N+   N+   + ++ + +L ++
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 57  KVNAKEL-----NNDLRADIISKELN----DRSYV---LFLDGVSSEINFKEIGMHDDHG 104
             N         N  LR   I  EL      + Y    L L  V +     +     +  
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN----AKAWNAFNLS 265

Query: 105 -------RGKVVFACRSREFCWQADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVA 157
                  R K V    S           H   L   E K L  + +    +  P      
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP------ 319

Query: 158 DSIVKE-CGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVY 216
               +E     P  L +I + + +        AT D  +  + ++   + E         
Sbjct: 320 ----REVLTTNPRRLSIIAESIRD------GLATWDNWKHVNCDKLTTIIES-------- 361

Query: 217 KNLSLEQQHCLLGWAIFSTGLELSQDYIIDGWAAQKFLASFNKIGDAH--TKRLSLF--G 272
              SL                E  + +          L+ F     AH  T  LSL    
Sbjct: 362 ---SLNVL----------EPAEYRKMF--------DRLSVFPP--SAHIPTILLSLIWFD 398

Query: 273 FPSSTLPDMPNCCEILTLILEGKRLEK--LPTSFFDYMCHL-QLLDLHETNIGCLPPSIS 329
              S +  + N     +L+ +  +     +P+ + +    L     LH            
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR----------- 447

Query: 330 RLINLNALFLRSSCSLLLQLPAE-------IGRLQKLEILDVSHTKVQCLPSEIGQLIEL 382
            +++ +    ++  S  L  P         IG           H K      E   L  +
Sbjct: 448 SIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGH----------HLK-NIEHPERMTLFRM 495

Query: 383 KYLRVSRVEN-VGNHTHADAGSGEMISLNIISKLRLLEELIIE 424
            +L    +E  + + + A   SG +  LN + +L+  +  I +
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSI--LNTLQQLKFYKPYICD 536

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.2 bits (209), Expect = 3e-18
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 3/115 (2%)

Query: 276 STLPDMPNCCEILTLILEGKRLEKLPTSFFD-YMCHLQLLDLHETNIGCLPPSISRLINL 334
            +     N          G+ L+       D        L+L    +   P    RL +L
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHL 106

Query: 335 NALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
             + +    + L++LP  + +   LE L ++   ++ LP+ I  L  L+ L +  
Sbjct: 107 QHMTI--DAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.8 bits (195), Expect = 2e-16
 Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 4/102 (3%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETN-IGCLPPSISRLINLNALFLRSSCSLLL 347
           +L +    L  L  +    +  L+ LDL     +   PP       L  L L   CS LL
Sbjct: 210 SLKIRNSPLSALGPAIHH-LPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL-KDCSNLL 267

Query: 348 QLPAEIGRLQKLEILDVSH-TKVQCLPSEIGQLIELKYLRVS 388
            LP +I RL +LE LD+     +  LPS I QL     + V 
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 32/131 (24%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRS------- 341
            + ++   L +LP +       L+ L L    +  LP SI+ L  L  L +R+       
Sbjct: 108 HMTIDAAGLMELPDTMQ-QFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL 166

Query: 342 ------------------------SCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIG 377
                                     + +  LPA I  LQ L+ L + ++ +  L   I 
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH 226

Query: 378 QLIELKYLRVS 388
            L +L+ L + 
Sbjct: 227 HLPKLEELDLR 237

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 5/113 (4%)

Query: 266 KRLSLFGFPSSTLPD-MPNCCEILTLILEG-KRLEKLPTSFFDYMCHLQLLDLHETN-IG 322
           K L +   P S L   + +  ++  L L G   L   P  F      L+ L L + + + 
Sbjct: 209 KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLL 267

Query: 323 CLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSE 375
            LP  I RL  L  L L   C  L +LP+ I +L    I+ V       L   
Sbjct: 268 TLPLDIHRLTQLEKLDL-RGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 84.3 bits (208), Expect = 1e-17
 Identities = 42/279 (15%), Positives = 78/279 (27%), Gaps = 25/279 (8%)

Query: 4   ICIWGPLGVGKTTIMENL--HHSIGESRRFDIIFWENI--NTDGNIRDIQEIILERLK-- 57
           + + G  G GK+ I               +D I W         +  D+   IL  LK  
Sbjct: 155 LFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSE 214

Query: 58  -------VNAKELNNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVF 110
                        +  L+  I +  ++  + +   D V  E    E        R + + 
Sbjct: 215 DDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE----ETIRWAQELRLRCLV 270

Query: 111 ACRSREFCWQADG---VIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGM 167
             R  E    A      I V  L   E      E  G+ +      E V +  ++   G 
Sbjct: 271 TTRDVEISNAASQTCEFIEVTSLEIDECYDFL-EAYGMPMPVGEKEEDVLNKTIELSSGN 329

Query: 168 PYMLKLIGKELANQSEVAIWRA----TADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQ 223
           P  L +  K    ++   + +      +  L           + +        + LS E 
Sbjct: 330 PATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDED 389

Query: 224 QHCLLGWAIFSTGLELSQDYIIDGWAAQKFLASFNKIGD 262
           +  L    +   G+++                   ++ D
Sbjct: 390 RSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDD 428

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 12/130 (9%)

Query: 269 SLFGFPSSTLPDMP----NCCEILTLILEGKRLEKLPTSFFDYMC-HLQLLDLHETNIGC 323
            L   P ++L D      N   + ++ L   +L KL   F      +L  +DL   +   
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527

Query: 324 LPPSISRLINLNALFLR-----SSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQ 378
            P        L    +R          L + P  I     L  L +    ++ +  +I  
Sbjct: 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI-- 585

Query: 379 LIELKYLRVS 388
              +  L + 
Sbjct: 586 TPNISVLDIK 595

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 18/178 (10%), Positives = 51/178 (28%), Gaps = 27/178 (15%)

Query: 268 LSLFGFPSSTLPDMP--NCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP 325
                +  + +   P  +  +++   +     +K              +     NI  + 
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199

Query: 326 PSISRLINLNALFLR------------------SSCSLLLQLPAEIGRLQKLEILDVSH- 366
            ++ RL  L   ++                              +   L+ L  ++V + 
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 367 TKVQCLPSEIGQLIELKYLRVSRVENVGNH-THADAGSGEMISLNIISKLRLLEELII 423
             +  LP+ +  L E++ + V+      N     +    +  +L        ++ + I
Sbjct: 260 PNLTKLPTFLKALPEMQLINVA-----CNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 17/138 (12%), Positives = 38/138 (27%), Gaps = 16/138 (11%)

Query: 272 GFPSSTLPDMP----NCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI------ 321
                    +         + ++ L   ++ K P   F     L  ++L    +      
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 322 --GCLPPSISRLINLNALFLRSSCSLLLQLPAEI--GRLQKLEILDVSHTKVQCLPSEIG 377
                  +      L ++ L     L  +L  +     L  L  +D+S+      P++  
Sbjct: 476 SLKDENENFKNTYLLTSIDL-RFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL 533

Query: 378 QLIELKYLRVSRVENVGN 395
               LK   +    +   
Sbjct: 534 NSSTLKGFGIRNQRDAQG 551

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 21/159 (13%), Positives = 54/159 (33%), Gaps = 16/159 (10%)

Query: 275 SSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP--SISRLI 332
              LP   +  ++ +L L   ++ ++P +F  +   ++ L      +  +P       + 
Sbjct: 343 EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402

Query: 333 NLNALFLRS------SCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEI-GQLIELKYL 385
            ++A+                 L     +   +  +++S+ ++   P E+      L  +
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462

Query: 386 RVSRVENVGNH-THADAGSGEMISLNIISKLRLLEELII 423
            +      GN  T     S +  + N      LL  + +
Sbjct: 463 NLM-----GNMLTEIPKNSLKDENEN-FKNTYLLTSIDL 495

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 21/142 (14%), Positives = 48/142 (33%), Gaps = 26/142 (18%)

Query: 291 ILEGKRLEKLPTSFFDYMCHLQLLDLHE---------TNIGCLPPSISRLINLNALFLRS 341
           +     L KLPT     +  +QL+++            +             +  +++  
Sbjct: 256 VYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI-G 313

Query: 342 SCSLL-LQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNH-THA 399
             +L    +   + +++KL +L+  + +++      G  I+L  L ++      N  T  
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLA-----YNQITE- 367

Query: 400 DAGSGEMISLNIISKLRLLEEL 421
                  I  N       +E L
Sbjct: 368 -------IPANFCGFTEQVENL 382

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 21/134 (15%)

Query: 272 GFPSSTLPDMPNCCEILTLILEGKRLEKLPTSF-------FDYMCHLQLLDLHETNIGCL 324
            FP            + ++ L G  L ++P +        F     L  +DL    +  L
Sbjct: 447 KFPKELFSTGSP---LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL 503

Query: 325 PPSI--SRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQC-------LPSE 375
                 + L  L  + L S  S   + P +      L+   + + +           P  
Sbjct: 504 SDDFRATTLPYLVGIDL-SYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

Query: 376 IGQLIELKYLRVSR 389
           I     L  L++  
Sbjct: 562 ITLCPSLTQLQIGS 575

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 8/98 (8%), Positives = 22/98 (22%), Gaps = 1/98 (1%)

Query: 292 LEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLR-SSCSLLLQLP 350
            +       P      M   Q   +             R    + +    +S      + 
Sbjct: 117 EKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176

Query: 351 AEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVS 388
                  K   +      +  +   + +L +L+   + 
Sbjct: 177 KSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMG 214

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 6/90 (6%)

Query: 310 HLQLLDLHETNI-GCLPPSISRLINLNALFLRS---SCSLLLQLPAEIGRLQKLEILDVS 365
            +  L L      G +P +I +L  L  L L S     +  L  P  I      E     
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 366 HTKVQCLPSEIGQLIELKYLRVSRVENVGN 395
                   + +       +  + +     +
Sbjct: 142 RMHY--QKTFVDYDPREDFSDLIKDCINSD 169

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 327 SISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQC-----LPSEIGQLIE 381
           S++    +  L L        ++P  IG+L +LE+L +     +       P  I   + 
Sbjct: 76  SLNSNGRVTGLSL-EGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 382 LKYLRVSRVENVGN 395
            +  +  R+     
Sbjct: 135 DEQKQKMRMHYQKT 148

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 310 HLQLLDLHETNI---GCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSH 366
            +  LDL   N+     +P S++ L  LN L++    +L+  +P  I +L +L  L ++H
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 367 TKVQ-CLPSEIGQLIELKYLRVS 388
           T V   +P  + Q+  L  L  S
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFS 133

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.6 bits (153), Expect = 4e-11
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 283 NCCEILTLILEGKRLE---KLPTSFFDYMCHLQLLDLHETN--IGCLPPSISRLINLNAL 337
               +  L L G  L     +P+S  + + +L  L +   N  +G +PP+I++L  L+ L
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 338 FLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLIELKYLRVSR 389
           ++ +  ++   +P  + +++ L  LD S+  +   LP  I  L  L  +    
Sbjct: 107 YI-THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.5 bits (127), Expect = 8e-08
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 299 KLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQ 357
           K+P +F +   +L  +DL    + G          N   + L +  SL   L  ++G  +
Sbjct: 189 KIPPTFAN--LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL-AKNSLAFDLG-KVGLSK 244

Query: 358 KLEILDVSHTKVQ-CLPSEIGQLIELKYLRVS 388
            L  LD+ + ++   LP  + QL  L  L VS
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.5 bits (119), Expect = 8e-07
 Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 27/106 (25%)

Query: 310 HLQLLDLHETNI-GCLPPSISRLINLNALFLRS------------SCSLLLQ-------- 348
            L  LD     + G LPPSIS L NL  +                S S L          
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185

Query: 349 ----LPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLIELKYLRVSR 389
               +P     L  L  +D+S   ++       G     + + +++
Sbjct: 186 LTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 44/274 (16%), Positives = 89/274 (32%), Gaps = 34/274 (12%)

Query: 4   ICIWGPLGVGKTTIMENLHHSIGESRRF--DIIFW---ENINTDGNIRDIQEIILE---- 54
           + I G  G GK+ +                  + W      +  G +  +Q +       
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 209

Query: 55  -----RLKVNAKELNNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGMHDDHGRG-KV 108
                RL +N +E  + LR  ++ K       +L LD V      K            ++
Sbjct: 210 ESFSQRLPLNIEEAKDRLRILMLRKH---PRSLLILDDVWDSWVLKAFD------SQCQI 260

Query: 109 VFACRSRE---FCWQADGVIHV-QQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKEC 164
           +   R +           V+ V   L + +  ++    V     K  D+   A SI+KEC
Sbjct: 261 LLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN---MKKADLPEQAHSIIKEC 317

Query: 165 GGMPYMLKLIGKELANQ-SEVAIWRAT--ADELRLTSSEEKKELEEVDRFFTLVYKNLSL 221
            G P ++ LIG  L +  +    +       + +        + E +D   ++  + L  
Sbjct: 318 KGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE 377

Query: 222 EQQHCLLGWAIFSTGLELSQDYIIDGWAAQKFLA 255
           + +      +I    +++    +   W  +    
Sbjct: 378 DIKDYYTDLSILQKDVKVPTKVLCILWDMETEEV 411

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 8/112 (7%)

Query: 283 NCCEILTLILEGKRLEKLPTSF-FDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLR- 340
           N   + T+ L   +L  L   F    + +L  +D+        P        L A  +R 
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRH 785

Query: 341 ----SSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVS 388
                   +L Q P  I     L  L +    ++ +  ++    +L  L ++
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIA 835

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.7 bits (155), Expect = 4e-11
 Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 14/136 (10%)

Query: 272 GFPSSTLPDMP--NCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP--- 326
               +    M         T+ L    ++K PT  F     +  + L    +  +P    
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 327 -----SISRLINLNALFLRSSCSLLLQLPAEI--GRLQKLEILDVSHTKVQCLPSEIGQL 379
                +      L  + L    + L  L  +     L  L  +DVS+      P++    
Sbjct: 718 KPKDGNYKNTYLLTTIDL--RFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS 775

Query: 380 IELKYLRVSRVENVGN 395
            +LK   +    +   
Sbjct: 776 SQLKAFGIRHQRDAEG 791

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 13/123 (10%), Positives = 41/123 (33%), Gaps = 11/123 (8%)

Query: 278 LPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETN-IGCLPPSISRLINLNA 336
                   +      +  +  +     +  +  L  ++L+    +  LP  +  L  L +
Sbjct: 460 FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519

Query: 337 LFLRS--------SCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSE--IGQLIELKYLR 386
           L +            +   +L  +     K++I  + +  ++  P+   + ++++L  L 
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD 579

Query: 387 VSR 389
              
Sbjct: 580 CVH 582

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 18/157 (11%), Positives = 52/157 (33%), Gaps = 16/157 (10%)

Query: 276 STLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP--SISRLIN 333
             L       ++  L L+  ++E++P  F  +   ++ L      +  +P   +   +  
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645

Query: 334 LNALFLRSSCSLLLQLPAEIG------RLQKLEILDVSHTKVQCLPSEI-GQLIELKYLR 386
           + ++    S + +      I       +      + +S+ ++Q  P+E+      +  + 
Sbjct: 646 MGSVDF--SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 387 VSRVENVGNHTHADAGSGEMISLNIISKLRLLEELII 423
           +S      N   +   +             LL  + +
Sbjct: 704 LS-----NNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 14/134 (10%), Positives = 40/134 (29%), Gaps = 16/134 (11%)

Query: 267 RLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP 325
           ++       + +   +    ++  +            +      +      +E       
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN----EE 484

Query: 326 PSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSH----------TKVQCLPSE 375
            S S L +L  + L  +C  + QLP  +  L +L+ L+++                L  +
Sbjct: 485 LSWSNLKDLTDVEL-YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 376 IGQLIELKYLRVSR 389
                +++   +  
Sbjct: 544 EDTGPKIQIFYMGY 557

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 9e-07
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 7/124 (5%)

Query: 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEK---LPTSFFDYMCHLQLLDLHETNIG 322
           K LS      +    +    E+   + E ++          F DY   L L DL +  I 
Sbjct: 350 KVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN 409

Query: 323 CLPPSIS----RLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQ 378
             P          I+L    + +  + +  +   I RL KL+I+  +++        +  
Sbjct: 410 RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDW 469

Query: 379 LIEL 382
               
Sbjct: 470 EDAN 473

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 11/108 (10%), Positives = 31/108 (28%), Gaps = 8/108 (7%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQ 348
            L             F D      + +  +  I      +    +            + +
Sbjct: 351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410

Query: 349 LPAEIGRLQKLEILDVSHTKVQC-------LPSEIGQLIELKYLRVSR 389
            P E+  ++K   + +  T++         +   I +L +L+ +  + 
Sbjct: 411 NP-EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.4 bits (154), Expect = 5e-11
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 275 SSTLPDMPNCCE--ILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLI 332
           ++ +  M  C       L +    L  LP        H+  L + + N+  LP     L 
Sbjct: 28  AAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLPALPPELR 84

Query: 333 NLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQL 379
            L       S + L  LP     L +L I     T +  LPS + +L
Sbjct: 85  TLEV-----SGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKL 126

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.0 bits (153), Expect = 7e-11
 Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 14/120 (11%)

Query: 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP 325
             LS+F  P + LP +P    +  L + G +L  LP         LQ L + +  +  LP
Sbjct: 104 LELSIFSNPLTHLPALP--SGLCKLWIFGNQLTSLPVLP----PGLQELSVSDNQLASLP 157

Query: 326 PSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYL 385
              S L  L A   +     L  LP     LQ+   L VS  ++  LP+   +L +L   
Sbjct: 158 ALPSELCKLWAYNNQ-----LTSLPMLPSGLQE---LSVSDNQLASLPTLPSELYKLWAY 209

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.9 bits (145), Expect = 7e-10
 Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 14/123 (11%)

Query: 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP 325
           + LS+     ++LP +P   E+  L     RL  LP         L+ L +    +  LP
Sbjct: 184 QELSVSDNQLASLPTLP--SELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLP 237

Query: 326 PSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYL 385
              S L  L       S + L  LP     L  L    V   ++  LP  +  L     +
Sbjct: 238 VLPSELKELMV-----SGNRLTSLPMLPSGLLSL---SVYRNQLTRLPESLIHLSSETTV 289

Query: 386 RVS 388
            + 
Sbjct: 290 NLE 292

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 11/120 (9%)

Query: 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP 325
            +L  +    ++LP +P+  +   LI+ G RL  LP         L+ L +    +  LP
Sbjct: 204 YKLWAYNNRLTSLPALPSGLK--ELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLP 257

Query: 326 PSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYL 385
              S L++L+        + L +LP  +  L     +++    +     +  + I     
Sbjct: 258 MLPSGLLSLSV-----YRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPG 312

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 310 HLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKV 369
              +L++ E+ +  LP  +    ++  L +    + L  LPA    L+ L   +VS  ++
Sbjct: 41  GNAVLNVGESGLTTLPDCL--PAHITTLVI--PDNNLTSLPALPPELRTL---EVSGNQL 93

Query: 370 QCLPSEIGQLIELKYLRVS 388
             LP     L+EL      
Sbjct: 94  TSLPVLPPGLLELSIFSNP 112

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.9 bits (150), Expect = 2e-10
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 11/94 (11%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQ 348
            L L    L  LP +       + +L++ +  +  LP   + L  L+A   R     L  
Sbjct: 63  ELQLNRLNLSSLPDNLPP---QITVLEITQNALISLPELPASLEYLDACDNR-----LST 114

Query: 349 LPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIEL 382
           LP     L+    LDV + ++  LP     L  +
Sbjct: 115 LPELPASLKH---LDVDNNQLTMLPELPALLEYI 145

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 14/113 (12%)

Query: 276 STLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLN 335
           STLP++P   + L +  +  +L  LP         L+ ++     +  LP   + L  L+
Sbjct: 113 STLPELPASLKHLDV--DNNQLTMLPEL----PALLEYINADNNQLTMLPELPTSLEVLS 166

Query: 336 ALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVS 388
               +     L  LP     L+ L   DVS   ++ LP+   +    +   + 
Sbjct: 167 VRNNQ-----LTFLPELPESLEAL---DVSTNLLESLPAVPVRNHHSEETEIF 211

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.4 bits (128), Expect = 8e-08
 Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 8/119 (6%)

Query: 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP 325
           + ++      + LP++P    +  L +   +L  LP    +    L+ LD+    +  LP
Sbjct: 143 EYINADNNQLTMLPELP--TSLEVLSVRNNQLTFLP----ELPESLEALDVSTNLLESLP 196

Query: 326 PSISRLINLNALFLRSSCS--LLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIEL 382
               R  +     +   C    +  +P  I  L     + +    +     E       
Sbjct: 197 AVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 6/89 (6%)

Query: 296 RLEKLPTSFFDYMCHLQLLDLHETNIGCLP--PSISRLINLNALFLRSSCSLLLQLPAEI 353
            +      +F      +   L   N            +   + L L  +   L  LP  +
Sbjct: 21  TISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL--NRLNLSSLPDNL 78

Query: 354 GRLQKLEILDVSHTKVQCLPSEIGQLIEL 382
               ++ +L+++   +  LP     L  L
Sbjct: 79  P--PQITVLEITQNALISLPELPASLEYL 105

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 7/118 (5%)

Query: 273 FPSSTLPDMPNCCEILTLILEGKRLEKLPT-SFFDYMCHLQLLDLHETNIGCLPPSISRL 331
                         +  L L+   ++ +           L+ L+L    I  +   +   
Sbjct: 135 LRDLDEGCRSR---VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-F 190

Query: 332 INLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
             L  L L SS  L   +  E      +  + + + K+  +   +     L++  +  
Sbjct: 191 AKLKTLDL-SSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 6/126 (4%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQ 348
            L L+   +  +          L+ LDL    +  + P       +  + LR++   L+ 
Sbjct: 173 HLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN--KLVL 228

Query: 349 LPAEIGRLQKLEILDVSHTKVQC--LPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEM 406
           +   +   Q LE  D+      C  L     +   ++ +    V+ +      +     +
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 407 ISLNII 412
                 
Sbjct: 289 GHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS--ISRLINLNALFLRSSCSLL 346
            + L   ++  L          +Q LDL    I  +  +   +    L  L L+   + +
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY--NFI 181

Query: 347 LQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
             +  ++    KL+ LD+S  K+  +  E      + ++ +  
Sbjct: 182 YDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 8/102 (7%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRSSCSLLL 347
              +    L++   S      +++ LDL    +  +    ++    L  L L  S ++L 
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL--SSNVLY 71

Query: 348 QLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
           +   ++  L  L  LD+++  V     E+     ++ L  + 
Sbjct: 72  ETL-DLESLSTLRTLDLNNNYV----QELLVGPSIETLHAAN 108

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 12/116 (10%)

Query: 274 PSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLIN 333
            +S      N   +  L L G  L ++  +       L+LL+L    +      +  L  
Sbjct: 26  LASLRQSAWN---VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLST 81

Query: 334 LNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
           L  L L ++  +      E+     +E L  ++  +  +    GQ    K + ++ 
Sbjct: 82  LRTLDL-NNNYV-----QELLVGPSIETLHAANNNISRVSCSRGQG--KKNIYLAN 129

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 311 LQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLLQLPAE-IGRLQKLEILDVSHTK 368
            ++  + ++++     S+     N+  L L  S + L Q+ A  +    KLE+L++S   
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDL--SGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 369 VQCLPSEIGQLIELKYLRVSR 389
           +     ++  L  L+ L ++ 
Sbjct: 70  LYETL-DLESLSTLRTLDLNN 89

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 22/123 (17%)

Query: 277 TLPDMPNCCE--ILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINL 334
            +  + +C +     L L    L  LP        HL+ L     ++  LP     L +L
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPELPP----HLESLVASCNSLTELPELPQSLKSL 116

Query: 335 NALFLRS---------------SCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQL 379
                                 S + L +LP E+     L+I+DV +  ++ LP     L
Sbjct: 117 LVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSL 175

Query: 380 IEL 382
             +
Sbjct: 176 EFI 178

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 27/159 (16%)

Query: 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP 325
           K L +       L D+P   E   L +   +LEKLP         L+++D+   ++  LP
Sbjct: 114 KSLLVDNNNLKALSDLPPLLE--YLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLP 169

Query: 326 PSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYL 385
                L  + A       + L +LP E+  L  L  +   +  ++ LP     L  +   
Sbjct: 170 DLPPSLEFIAA-----GNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESI--- 220

Query: 386 RVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE 424
                          AG+  +  L  +  L  L  +  +
Sbjct: 221 --------------VAGNNILEELPELQNLPFLTTIYAD 245

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 10/113 (8%)

Query: 276 STLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLN 335
             LP++ N   +  +  +   L+KLP         L+ +      +  LP  +  L  L 
Sbjct: 186 EELPELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELP-ELQNLPFLT 240

Query: 336 ALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVS 388
            ++     +LL  LP     L+ L + D   T    LP     L  L      
Sbjct: 241 TIYA--DNNLLKTLPDLPPSLEALNVRDNYLTD---LPELPQSLTFLDVSENI 288

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 11/114 (9%)

Query: 276 STLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLN 335
             LP++ N   +  + ++   L+KLP    D    L+ +      +  LP  +  L  L 
Sbjct: 144 EKLPELQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLEELPE-LQNLPFLT 198

Query: 336 ALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
           A++     + L +LP     L+ +      +  ++ LP E+  L  L  +    
Sbjct: 199 AIYA--DNNSLKKLPDLPLSLESI---VAGNNILEELP-ELQNLPFLTTIYADN 246

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 16/119 (13%)

Query: 276 STLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLN 335
             LP++ N   + T+  +   L+ LP         L+ L++ +  +  LP     L  L+
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLPELPQSLTFLD 283

Query: 336 ALFLRSS---------CSLLL---QLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIEL 382
                 S           L     ++ +       LE L+VS+ K+  LP+   +L  L
Sbjct: 284 VSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL 342

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 27/134 (20%)

Query: 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP 325
             L+       +L D+P    +  L +   +L +LP         L+ L     ++  +P
Sbjct: 300 YYLNASSNEIRSLCDLPP--SLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVP 353

Query: 326 PSISRLINLNALFLRSSCSLLLQLPAEIGRLQ----------------KLEILDVSHTKV 369
                L  L+        + L + P     ++                 L+ L V    +
Sbjct: 354 ELPQNLKQLHV-----EYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408

Query: 370 QCLPSEIGQLIELK 383
           +  P     + +L+
Sbjct: 409 REFPDIPESVEDLR 422

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 266 KRLSLFGFPSSTLPDMPNCCEILTLI-LEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL 324
           + L++     + LP++P     L +       L +LP +       L  L+     I  L
Sbjct: 260 EALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIRSL 312

Query: 325 PPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIEL 382
                 L  LN      S + L++LPA   RL++L     S   +  +P     L +L
Sbjct: 313 CDLPPSLEELNV-----SNNKLIELPALPPRLERL---IASFNHLAEVPELPQNLKQL 362

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 16/116 (13%), Positives = 28/116 (24%), Gaps = 16/116 (13%)

Query: 285 CEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFLRS-- 341
             +   +     L ++P    + +          +      PP       +    LR   
Sbjct: 11  TFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 342 ---------SCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVS 388
                    +   L  LP     L+ L     S   +  LP     L  L     +
Sbjct: 70  DRQAHELELNNLGLSSLPELPPHLESL---VASCNSLTELPELPQSLKSLLVDNNN 122

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 16/125 (12%), Positives = 31/125 (24%), Gaps = 20/125 (16%)

Query: 276 STLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLN 335
             LP       +  LI     L ++P        +L+ L +    +   P     + +L 
Sbjct: 330 IELP--ALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLREFPDIPESVEDLR 383

Query: 336 AL--------------FLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIE 381
                            L    + L + P     ++ L +             E    +E
Sbjct: 384 MNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLE 443

Query: 382 LKYLR 386
                
Sbjct: 444 DDVFE 448

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 3/66 (4%)

Query: 324 LPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQC-LPSEIGQLIEL 382
           + P       L      SS   L ++P E   ++       + ++ +   P   G+  E+
Sbjct: 3   INPRNVSNTFLQEPLRHSSN--LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 383 KYLRVS 388
              R+ 
Sbjct: 61  AVSRLR 66

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 4/114 (3%)

Query: 276 STLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLN 335
           +    + N   ++ + L    LEK+    F  M  L+ L +    +  L      +  L 
Sbjct: 239 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK 298

Query: 336 ALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
            L L  S + LL +     +  +LE L + H  +  L   +     LK L +S 
Sbjct: 299 VLDL--SHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLL 347
            +  +   + KLP +  D    ++LL+L++  I  +     +    +  L++    + + 
Sbjct: 49  IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF--NAIR 106

Query: 348 QLPAEIGR-LQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVSR 389
            LP  + + +  L +L +    +  LP  I     +L  L +S 
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 150

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 13/116 (11%)

Query: 274 PSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLIN 333
           P     + P    + TL +    LE++    F     LQ L L    +  +  S+  + +
Sbjct: 133 PRGIFHNTPK---LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPS 187

Query: 334 LNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
           L    + S   L     + +     +E LD SH  +  +       +EL  L++  
Sbjct: 188 LFHANV-SYNLL-----STLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQH 235

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 12/117 (10%)

Query: 274 PSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLI 332
           P     ++P    +  L+LE   L  LP   F     L  L +   N+  +         
Sbjct: 109 PPHVFQNVPL---LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165

Query: 333 NLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
           +L  L L SS   L  +   +  +  L   +VS+  +  L       I ++ L  S 
Sbjct: 166 SLQNLQL-SSNR-LTHVD--LSLIPSLFHANVSYNLLSTLAI----PIAVEELDASH 214

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.0 bits (141), Expect = 4e-09
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 277 TLPD-MPNCCEILTLILEGKRLE-KLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLIN 333
            +P  +     + TLIL+   L  ++P+   +   +L  + L    + G +P  I RL N
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLEN 515

Query: 334 LNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLIEL 382
           L  L L +  S    +PAE+G  + L  LD++       +P+ + +    
Sbjct: 516 LAILKLSN-NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 279 PDMPNCCEILTLILEGKRLE-KLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNA 336
             + +  ++  L L    LE ++P      +  L+ L L   ++ G +P  +S   NLN 
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNW 494

Query: 337 LFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLIELKYLRVS 388
           + L S+  L  ++P  IGRL+ L IL +S+      +P+E+G    L +L ++
Sbjct: 495 ISL-SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 6/111 (5%)

Query: 283 NCCEILTLILEGKRLE-KLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFLR 340
               +  L L   +   ++P         L  LDL   +  G +PP       L +L L 
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL- 325

Query: 341 SSCSLLLQLPAE-IGRLQKLEILDVSHTKVQ-CLPSEIGQL-IELKYLRVS 388
           SS +   +LP + + +++ L++LD+S  +    LP  +  L   L  L +S
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 8e-08
 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 299 KLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQ 357
            +P+S    +  L+ L L    + G +P  +  +  L  L L     L  ++P+ +    
Sbjct: 433 TIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL-DFNDLTGEIPSGLSNCT 490

Query: 358 KLEILDVSHTKVQ-CLPSEIGQLIELKYLRVS 388
            L  + +S+ ++   +P  IG+L  L  L++S
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 9/122 (7%)

Query: 273 FPSSTLPDMPNCCEILTLILEGKRLE-KLPTSFFDYMCHLQLLDLHETNI-GCLPPSISR 330
            P  TL  M     +  L L       +LP S  +    L  LDL   N  G + P++ +
Sbjct: 334 LPMDTLLKMRG---LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390

Query: 331 --LINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLIELKYLRV 387
                L  L+L  +     ++P  +    +L  L +S   +   +PS +G L +L+ L++
Sbjct: 391 NPKNTLQELYL-QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449

Query: 388 SR 389
             
Sbjct: 450 WL 451

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 5/112 (4%)

Query: 282 PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI---GCLPPSISRLINLNALF 338
           P      +  +    +      +       +        +   G     ++RL   N   
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614

Query: 339 LRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLIELKYLRVSR 389
           + +S                +  LD+S+  +   +P EIG +  L  L +  
Sbjct: 615 I-TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 10/120 (8%)

Query: 275 SSTLPD-MPNCCEILTLILEGKRLE-KLPTSFFDYMCHLQLLDLHETNI-GCLPPSIS-R 330
           S      +  C E+  L +   +    +P      +  LQ L L E    G +P  +S  
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGA 292

Query: 331 LINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQC-LPSE-IGQLIELKYLRVS 388
              L  L L S       +P   G    LE L +S       LP + + ++  LK L +S
Sbjct: 293 CDTLTGLDL-SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 7e-07
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 299 KLPTSFF-DYMCHLQLLDLHETNI-GCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRL 356
            +  +   +    LQ L L      G +PP++S    L +L L S   L   +P+ +G L
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL-SFNYLSGTIPSSLGSL 441

Query: 357 QKLEILDVSHTKVQ-CLPSEIGQLIELKYLRVS 388
            KL  L +    ++  +P E+  +  L+ L + 
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 19/155 (12%)

Query: 269 SLFGFPSSTLPDMPNCCEILTLILEGKRLE-KLPTSFFDYMCHLQLLDLHETNIGCLPPS 327
           S+ G           C E+  L + G ++   +         +L+ LD+   N     P 
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF 218

Query: 328 ISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQC-LPSEIGQLIELKYLR 386
           +     L  L + S   L       I    +L++L++S  +    +P     L  L+YL 
Sbjct: 219 LGDCSALQHLDI-SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLS 275

Query: 387 VSRVENVGNHTHADAGSGEMISLNIISKLRLLEEL 421
           ++      N       +GE I   +      L  L
Sbjct: 276 LA-----ENKF-----TGE-IPDFLSGACDTLTGL 299

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 7/130 (5%)

Query: 265 TKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLE---KLPTSFFDYMCHLQLLDLHETNI 321
           + +++           + N          G  LE            +      ++     
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVY 620

Query: 322 -GCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQC-LPSEIGQL 379
            G   P+     ++  L + S   L   +P EIG +  L IL++ H  +   +P E+G L
Sbjct: 621 GGHTSPTFDNNGSMMFLDM-SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679

Query: 380 IELKYLRVSR 389
             L  L +S 
Sbjct: 680 RGLNILDLSS 689

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 17/128 (13%)

Query: 299 KLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPA--EIGRL 356
            + +S    +  L+ L L  ++I           +L +L L S  SL   +     +G  
Sbjct: 68  AVSSSLLS-LTGLESLFLSNSHINGSVSGFKCSASLTSLDL-SRNSLSGPVTTLTSLGSC 125

Query: 357 QKLEILDVSHTKVQCL--PSEIGQLIELKYLRVSRVENVGNHTHADAGSGEM-ISLNIIS 413
             L+ L+VS   +      S   +L  L+ L +S      N       SG   +   +  
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS-----ANSI-----SGANVVGWVLSD 175

Query: 414 KLRLLEEL 421
               L+ L
Sbjct: 176 GCGELKHL 183

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 3/123 (2%)

Query: 268 LSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPP 326
            +L  F       +          +  +      +  FD    +  LD+    + G +P 
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650

Query: 327 SISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQC-LPSEIGQLIELKYL 385
            I  +  L  L L     +   +P E+G L+ L ILD+S  K+   +P  +  L  L  +
Sbjct: 651 EIGSMPYLFILNL-GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709

Query: 386 RVS 388
            +S
Sbjct: 710 DLS 712

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.5 bits (136), Expect = 8e-09
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 4/114 (3%)

Query: 276 STLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLN 335
           +    + N   ++ + L    LEK+    F  M  L+ L +    +  L      +  L 
Sbjct: 245 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK 304

Query: 336 ALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
            L L  S + LL +     +  +LE L + H  +  L   +     LK L +S 
Sbjct: 305 VLDL--SHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.3 bits (120), Expect = 7e-07
 Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLL 347
            +  +   + KLP +  D    ++LL+L++  I  +     +    +  L++    + + 
Sbjct: 55  IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM--GFNAIR 112

Query: 348 QLPAEIGR-LQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVSR 389
            LP  + + +  L +L +    +  LP  I     +L  L +S 
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 13/117 (11%)

Query: 273 FPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLI 332
            P     + P    + TL +    LE++    F     LQ L L    +  +  S+  + 
Sbjct: 138 LPRGIFHNTPK---LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IP 192

Query: 333 NLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
           +L    + S   L     + +     +E LD SH  +  +   +   +EL  L++  
Sbjct: 193 SLFHANV-SYNLL-----STLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQH 241

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 12/117 (10%)

Query: 274 PSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLI 332
           P     ++P    +  L+LE   L  LP   F     L  L +   N+  +         
Sbjct: 115 PPHVFQNVPL---LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171

Query: 333 NLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
           +L  L L S  + L  +   +  +  L   +VS+  +  L       I ++ L  S 
Sbjct: 172 SLQNLQLSS--NRLTHVD--LSLIPSLFHANVSYNLLSTLAI----PIAVEELDASH 220

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 7/124 (5%)

Query: 269 SLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-S 327
            L    S +    P    +  L L    ++ +    +  + HL  L L    I  L   +
Sbjct: 39  PLRHLGSYSFFSFPE---LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95

Query: 328 ISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCL--PSEIGQLIELKYL 385
            S L +L  L      +L       IG L+ L+ L+V+H  +Q    P     L  L++L
Sbjct: 96  FSGLSSLQKLVA-VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 386 RVSR 389
            +S 
Sbjct: 155 DLSS 158

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 7/123 (5%)

Query: 269 SLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-S 327
            +          + +   + TLIL G  ++ L    F  +  LQ L   ETN+  L    
Sbjct: 63  EIQTIEDGAYQSLSH---LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119

Query: 328 ISRLINLNALFLRSSCSLL-LQLPAEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYL 385
           I  L  L  L + +   +   +LP     L  LE LD+S  K+Q +  +++  L ++  L
Sbjct: 120 IGHLKTLKELNV-AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 386 RVS 388
            +S
Sbjct: 179 NLS 181

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 31/159 (19%), Positives = 48/159 (30%), Gaps = 16/159 (10%)

Query: 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP 325
              SL       + D         L L   +  + PT     +  L        N     
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN----A 340

Query: 326 PSISRLINLNALFL-RSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKY 384
            S   L +L  L L R+  S              L+ LD+S   V  + S    L +L++
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400

Query: 385 LRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELII 423
           L         ++        +M   ++   LR L  L I
Sbjct: 401 LDFQ-----HSNLK------QMSEFSVFLSLRNLIYLDI 428

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 6/106 (5%)

Query: 285 CEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRSSC 343
              +T         K+P +        + LDL    +  L   S      L  L L S C
Sbjct: 7   VPNITYQCMELNFYKIPDNLPF---STKNLDLSFNPLRHLGSYSFFSFPELQVLDL-SRC 62

Query: 344 SLLLQLPAEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVS 388
            +          L  L  L ++   +Q L       L  L+ L   
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 17/149 (11%)

Query: 256 SFNKIGDAHTKRLSLFGFPS-----------STLP-DMPNCCEILTLILEGKRLEKL-PT 302
           S N +        S FG  S            T+  +     ++  L  +   L+++   
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 303 SFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFLRSSCSLLLQLPAEI-GRLQKLE 360
           S F  + +L  LD+  T+         + L +L  L + +  S       +I   L+ L 
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM-AGNSFQENFLPDIFTELRNLT 473

Query: 361 ILDVSHTKVQCL-PSEIGQLIELKYLRVS 388
            LD+S  +++ L P+    L  L+ L +S
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 7/120 (5%)

Query: 273 FPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSI-SR 330
              S    + N   ++ L +            F+ +  L++L +   +      P I + 
Sbjct: 412 SEFSVFLSLRN---LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 331 LINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSR 389
           L NL  L L S C L    P     L  L++L++SH     L       L  L+ L  S 
Sbjct: 469 LRNLTFLDL-SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 11/163 (6%)

Query: 266 KRLSLFG--FPSSTLPDM-PNCCEILTLILEGKRLEKLPTSFFDYMCHLQL----LDLHE 318
           K L++      S  LP+   N   +  L L   +++ +  +    +  + L    LDL  
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 319 TNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTK----VQCLPS 374
             +  + P   + I L+ L LR++   L  +   I  L  LE+  +   +          
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 375 EIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRL 417
           +   L  L  L +          + D        L  +S   L
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.0 bits (135), Expect = 9e-09
 Identities = 14/120 (11%), Positives = 36/120 (30%), Gaps = 7/120 (5%)

Query: 270 LFGFPSSTLPDMPNCCEILTLILEGKRLEKLPT-SFFDYMCHLQLLDLHETNIGCLPPSI 328
           +                +  L L+   ++ +           L+ L+L    I  +   +
Sbjct: 132 ITMLRDLDEGCRSR---VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188

Query: 329 SRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVS 388
                L  L L S+   L  +  E      +  + + + K+  +   +     L++  + 
Sbjct: 189 V-FAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.3 bits (128), Expect = 8e-08
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS--ISRLINLNALFLRSSCSLL 346
            + L   ++  L          +Q LDL    I  +  +   +    L  L L+ +   +
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN--FI 181

Query: 347 LQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
             +  ++    KL+ LD+S  K+  +  E      + ++ +  
Sbjct: 182 YDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 8/102 (7%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRSSCSLLL 347
              +    L++   S      +++ LDL    +  +    ++    L  L L  S ++L 
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL--SSNVLY 71

Query: 348 QLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
           +   ++  L  L  LD+++  V     E+     ++ L  + 
Sbjct: 72  ETL-DLESLSTLRTLDLNNNYV----QELLVGPSIETLHAAN 108

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 311 LQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKV 369
            ++  + ++++     S+     N+  L L S   L     A++    KLE+L++S   +
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDL-SGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 370 QCLPSEIGQLIELKYLRVSR 389
                ++  L  L+ L ++ 
Sbjct: 71  YETL-DLESLSTLRTLDLNN 89

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 15/116 (12%), Positives = 41/116 (35%), Gaps = 10/116 (8%)

Query: 276 STLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLN 335
               D+ +   + TL L    +++L          ++ L     NI  +  S        
Sbjct: 71  YETLDLESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISRVSCSR--GQGKK 123

Query: 336 ALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSE--IGQLIELKYLRVSR 389
            ++L ++  + +    + G   +++ LD+   ++  +           L++L +  
Sbjct: 124 NIYL-ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 33/202 (16%), Positives = 67/202 (33%), Gaps = 37/202 (18%)

Query: 256 SFNKIGD-------AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYM 308
               I         A   R  L     + +        I  L++ G+++  +     +Y+
Sbjct: 8   LPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ--GIEYL 65

Query: 309 CHLQLLDLHETNIGCLPPSISRLINLNALFLR----SSCSLLLQLPA------------- 351
            +L+ L+L+   I  + P +S L+ L  L++     +  S L  L               
Sbjct: 66  TNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD 124

Query: 352 --EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYL-----RVSRVENVGNHT---HADA 401
              +  L K+  L++         S +  +  L YL     +V  V  + N T       
Sbjct: 125 ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSL 184

Query: 402 GSGEMISLNIISKLRLLEELII 423
              ++  ++ ++ L  L     
Sbjct: 185 NYNQIEDISPLASLTSLHYFTA 206

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 7/123 (5%)

Query: 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP 325
             L+    P + +    +  E +  +L+   +  + T   + +  +  L +    +  + 
Sbjct: 3   ATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQ 60

Query: 326 PSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYL 385
             I  L NL  L L  +    +   + +  L KL  L +   K+  + + +  L  L+ L
Sbjct: 61  G-IEYLTNLEYLNLNGN---QITDISPLSNLVKLTNLYIGTNKITDISA-LQNLTNLREL 115

Query: 386 RVS 388
            ++
Sbjct: 116 YLN 118

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 22/150 (14%), Positives = 52/150 (34%), Gaps = 21/150 (14%)

Query: 276 STLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLN 335
           + +  + N   + +L +   ++  L       +  L  L++    I  +   +  L  L 
Sbjct: 212 TDITPVANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISDINA-VKDLTKLK 268

Query: 336 ALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVG 394
            L +  S  +     + +  L +L  L +++ ++       IG L  L  L +S      
Sbjct: 269 MLNV-GSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS-----Q 320

Query: 395 NHTHADAGSGEMISLNIISKLRLLEELIIE 424
           NH         +  +  ++ L  ++     
Sbjct: 321 NH---------ITDIRPLASLSKMDSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 7/113 (6%)

Query: 276 STLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLN 335
             +  + +   +        ++  +       M  L  L +    I  L P ++ L  L 
Sbjct: 190 EDISPLASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLSP-LANLSQLT 246

Query: 336 ALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVS 388
            L +    + +  + A +  L KL++L+V   ++  +   +  L +L  L ++
Sbjct: 247 WLEI--GTNQISDINA-VKDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLN 295

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 12/127 (9%)

Query: 272 GFPSSTLPDMPNCC-------EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL 324
            F  +   D  N          + T  L   ++  L  S F +   L+ L L +  I  +
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314

Query: 325 PPSI-SRLINLNALFLRSSCSLLLQLPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIE 381
             +    L +L  L L  S + L  + + +   L KLE+LD+S+  ++ L  +    L  
Sbjct: 315 DDNAFWGLTHLLKLNL--SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372

Query: 382 LKYLRVS 388
           LK L + 
Sbjct: 373 LKELALD 379

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 15/121 (12%)

Query: 289 TLILEGKRLEKL-PTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLL 346
            L+L    ++K+ P SFF  M    +LDL    +  +           +   LR S   L
Sbjct: 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL 192

Query: 347 LQLPAEIG---------RLQKLEILDVSHTKVQCLPSEI----GQLIELKYLRVSRVENV 393
             +              +   +  LD+S    +   ++         +++ L +S   N+
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 394 G 394
           G
Sbjct: 253 G 253

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 10/120 (8%)

Query: 276 STLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS--ISRLIN 333
             +P++P    +  + L    + +L  + F  +  LQ L + +   G +  +     L +
Sbjct: 23  HQVPELPA--HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 334 LNALFLRSSCSLLLQLPAEI-GRLQKLEILDVSHTKVQ--CLPSEI-GQLIELKYLRVSR 389
           L  L L    +  LQL       L  LE+L ++   +    L       L  L+ L +  
Sbjct: 81  LIILKLDY--NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 11/95 (11%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI--GCLPPSI-SRLINLNALFLR----S 341
            L L+  +  +L T  F+ + +L++L L + N+    L  +    L +L  L LR     
Sbjct: 83  ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

Query: 342 SCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEI 376
                +Q  +    +++  +LD++  KV+ +  E 
Sbjct: 143 K----IQPASFFLNMRRFHVLDLTFNKVKSICEED 173

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 6e-08
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 281 MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLR 340
                ++  L L  K L  L     + +  +  LDL    +  LPP+++ L  L  L   
Sbjct: 437 KMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA- 493

Query: 341 SSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPS--EIGQLIELKYL 385
            S + L  +   +  L +L+ L + + ++Q   +   +     L  L
Sbjct: 494 -SDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 290 LILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLLQ 348
           L L    L  L +  F     LQ+LDL    I  +       L +L+ L L  + + +  
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL--TGNPIQS 90

Query: 349 LPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVSR 389
           L       L  L+ L    T +  L +   G L  LK L V+ 
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 2/102 (1%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLL 347
           TLIL G  ++ L    F  +  LQ L   ETN+  L       L  L  L +  +     
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 348 QLPAEIGRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVS 388
           +LP     L  LE LD+S  K+Q +       L ++  L +S
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLL 347
            L L    ++ +    +  + HL  L L    I  L     S L +L  L      + L 
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA-VETN-LA 113

Query: 348 QLPAEI-GRLQKLEILDVSHTKVQCLPSEIG---QLIELKYLRVSR 389
            L     G L+ L+ L+V+H  +Q           L  L++L +S 
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSS 158

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 9e-08
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 16/129 (12%)

Query: 256 SFNKIGDAHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPT--SFFDYMCHLQL 313
           S N + + + K  +  G   S          + TL+L    L  +         + +L  
Sbjct: 342 SENLMVEEYLKNSACKGAWPS----------LQTLVLSQNHLRSMQKTGEILLTLKNLTS 391

Query: 314 LDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLP 373
           LD+       +P S      +  L L SS   +  +   I   Q LE+LDVS+  +    
Sbjct: 392 LDISRNTFHPMPDSCQWPEKMRFLNL-SSTG-IRVVKTCI--PQTLEVLDVSNNNLDSFS 447

Query: 374 SEIGQLIEL 382
             + +L EL
Sbjct: 448 LFLPRLQEL 456

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLL 347
           +L L   ++  +         +LQ+L L  + I  +       L +L  L L S    L 
Sbjct: 30  SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL-SDNH-LS 87

Query: 348 QLPAE-IGRLQKLEILDVSHTKVQCLP--SEIGQLIELKYLRVSR 389
            L +   G L  L+ L++     Q L   S    L  L+ LR+  
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 8/125 (6%)

Query: 269 SLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHE---TNIGCLP 325
            LF   S+    +     +  + +E  ++  +P SF  ++  L+ LDL E          
Sbjct: 297 YLFYDLSTVYSLLEK---VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 326 PS-ISRLINLNALFLRS-SCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELK 383
            +      +L  L L       + +    +  L+ L  LD+S      +P       +++
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 413

Query: 384 YLRVS 388
           +L +S
Sbjct: 414 FLNLS 418

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 5/114 (4%)

Query: 280 DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALF 338
           D+  C  +  LIL+  R+  +    F  +  L+ LDL + ++  L  S    L +L  L 
Sbjct: 45  DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104

Query: 339 LRSSCSLL-LQLPAEIGRLQKLEILDVSHT-KVQCLPSE-IGQLIELKYLRVSR 389
           L        L + +    L  L+ L + +      +       L  L  L +  
Sbjct: 105 L-MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 14/135 (10%)

Query: 269 SLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS- 327
           SL  + S +L  + +   I  L L       L   F D +  ++ L+L +TN+     S 
Sbjct: 159 SLRNYQSQSLKSIRD---IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP 215

Query: 328 ---------ISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCL-PSEIG 377
                    + +L    ++    S + LL+L   I  L ++E  D +   +    PSE  
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275

Query: 378 QLIELKYLRVSRVEN 392
            + EL  +    +  
Sbjct: 276 VVSELGKVETVTIRR 290

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 14/116 (12%)

Query: 278 LPDMPNCCEILT----LILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLIN 333
              MP+ C+       L L    +  + T        L++LD+   N+      + RL  
Sbjct: 399 FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ---TLEVLDVSNNNLDSFSLFLPRLQE 455

Query: 334 LNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVS 388
           L      S    L  LP +      L ++ +S  +++ +P  I  +L  L+ + + 
Sbjct: 456 LYI----SRNK-LKTLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 28/179 (15%)

Query: 237 LELSQDYIIDGWAAQKFLASFNKIGDAHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKR 296
           L       +         ++   +     + +       +    +     + ++ L+   
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINLQKHY 265

Query: 297 LEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLR---------------- 340
              + ++ F     LQ LDL  T++  LP  +  L  L  L L                 
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 341 -------SSCSLLLQLPAE-IGRLQKLEILDVSH---TKVQCLPSEIGQLIELKYLRVS 388
                     +  L+L    +  L+ L  LD+SH       C   ++  L  L+ L +S
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 28/139 (20%), Positives = 42/139 (30%), Gaps = 18/139 (12%)

Query: 256 SFNKIGDAHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLD 315
           S + I  +    L L                + +L L       L T  F     L+LLD
Sbjct: 358 SHDDIETSDCCNLQLRNLSH-----------LQSLNLSYNEPLSLKTEAFKECPQLELLD 406

Query: 316 LHETNIGCLPP--SISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSH----TKV 369
           L  T +           L  L  L L S   L +        L  L+ L++         
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNL-SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465

Query: 370 QCLPSEIGQLIELKYLRVS 388
               + +  L  L+ L +S
Sbjct: 466 IQKTNSLQTLGRLEILVLS 484

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 20/133 (15%), Positives = 39/133 (29%), Gaps = 11/133 (8%)

Query: 264 HTKRLSLFG-----FPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHE 318
            T+ L           ++T   + N   +  L L   ++  +    F     L  L L  
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLIN---LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 319 TNIGCLPPSI-SRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLP-SEI 376
             +  +  +  S    L  LF      +       +   + LE L +    +  +   + 
Sbjct: 91  NPLIFMAETALSGPKALKHLFF-IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 377 GQLIELKYLRVSR 389
               +LK L    
Sbjct: 150 FPTEKLKVLDFQN 162

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 13/127 (10%), Positives = 34/127 (26%), Gaps = 9/127 (7%)

Query: 269 SLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQL--LDLHETNIGCLPP 326
            +                +  L  +   +  L       +       L+L+  +I  + P
Sbjct: 140 HISSIKLPKGFPTEK---LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196

Query: 327 SISRLINLNALFLRSSCSLLLQLPA----EIGRLQKLEILDVSHTKVQCLPSEIGQLIEL 382
                    +L    + +LL+         I  L      D+    +     E    + +
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256

Query: 383 KYLRVSR 389
           + + + +
Sbjct: 257 ESINLQK 263

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRSSCSLLL 347
           TL+L    L  +  +       L+ L   +T I  +    +     L +L+L  S  +  
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL-GSNHISS 143

Query: 348 QLPAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYL 385
               +    +KL++LD  +  +  L  E +  L +   L
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 14/128 (10%), Positives = 40/128 (31%), Gaps = 5/128 (3%)

Query: 269 SLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI 328
                       +     +  L+L    L  +    F  +  +  +DL    +       
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

Query: 329 SRLINLNALFLRSSCSLLLQLPAEI-GRLQKLEILDVSHTKVQCLPSEIG--QLIELKYL 385
             L +L  ++L  + + +  +   +   L +   +++    + C  S I   +  +    
Sbjct: 520 --LSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQ 577

Query: 386 RVSRVENV 393
           ++   E+ 
Sbjct: 578 KLEDTEDT 585

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRSSCSLLL 347
           TLIL G  ++ L    F  +  LQ L   ETN+  L    I  L  L  L +  +     
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 348 QLPAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVS 388
           +LP     L  LE LD+S  K+Q +    +  L ++  L +S
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 12/135 (8%)

Query: 263 AHTKRLSLFG-----FPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLH 317
             TK L L         S +    P    +  L L    ++ +    +  + HL  L L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPE---LQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 318 ETNIGCLPPSI-SRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCL--PS 374
              I  L     S L +L  L      +L       IG L+ L+ L+V+H  +Q    P 
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVA-VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 375 EIGQLIELKYLRVSR 389
               L  L++L +S 
Sbjct: 144 YFSNLTNLEHLDLSS 158

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 15/127 (11%)

Query: 267 RLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHE---TNIGC 323
                 FP+  L  +        L     +     +     +  L+ LDL     +  GC
Sbjct: 313 NCKFGQFPTLKLKSLKR------LTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGC 364

Query: 324 LPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEI--GQLIE 381
              S     +L  L L S   ++  + +    L++LE LD  H+ ++ +        L  
Sbjct: 365 CSQSDFGTTSLKYLDL-SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 382 LKYLRVS 388
           L YL +S
Sbjct: 423 LIYLDIS 429

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 6/106 (5%)

Query: 287 ILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSI-SRLINLNALFLRSSCS 344
           ++ L +            F+ +  L++L +   +      P I + L NL  L L S C 
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL-SQCQ 481

Query: 345 LLLQLPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVS 388
            L QL       L  L++L+++  +++ +P  I  +L  L+ + + 
Sbjct: 482 -LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 8/139 (5%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQL----LDLHETNIGCLPPSISRLINLNALFLRSSCS 344
            L L   +++ +  +    +  + L    LDL    +  + P   + I L+ L LR++  
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212

Query: 345 LLLQLPAEIGRLQKLEILDVSHTKVQCLPS----EIGQLIELKYLRVSRVENVGNHTHAD 400
            L  +   I  L  LE+  +   + +   +    +   L  L  L +          + D
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 401 AGSGEMISLNIISKLRLLE 419
                   L  +S   L+ 
Sbjct: 273 DIIDLFNCLTNVSSFSLVS 291

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 60/372 (16%), Positives = 120/372 (32%), Gaps = 63/372 (16%)

Query: 4   ICIWGPLGVGKTTIMENL--HHSIGESRRFDIIFW---ENINTDGNIRDIQEIIL----- 53
           + I+G  G GK+ +       HS+ E      + W      +  G +  +Q + +     
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 209

Query: 54  ----ERLKVNAKELNNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVV 109
               +RL +N +E  + LR  ++ K       +L LD V      K           +++
Sbjct: 210 ESFSQRLPLNIEEAKDRLRVLMLRKHPR---SLLILDDVWDPWVLKAFDNQC-----QIL 261

Query: 110 FACRSREFCWQADG---VIHVQ-QLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECG 165
              R +       G   V+ V+  L + +  ++    V     K  D+   A SI+KEC 
Sbjct: 262 LTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVN---MKKEDLPAEAHSIIKECK 318

Query: 166 GMPYMLKLIG---KELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLE 222
           G P ++ LIG   ++  N+    + +    + +        + E +D   ++  + L  +
Sbjct: 319 GSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED 378

Query: 223 QQHCLLGWAIFSTGLELSQDYI-----IDGWAAQKFLASFNKIGDAHTKRLSLFGFPSST 277
            +      +I    +++    +     ++    +  L  F           SL     + 
Sbjct: 379 IKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEF--------VNKSLLFCNRNG 430

Query: 278 LPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNAL 337
                   ++                F       QL DLH   +        R    + L
Sbjct: 431 KSFCYYLHDLQ-------------VDFLTEKNRSQLQDLHRKMV----TQFQRYYQPHTL 473

Query: 338 F-LRSSCSLLLQ 348
              +  C     
Sbjct: 474 SPDQEDCMYWYN 485

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 9/112 (8%)

Query: 282 PNC---CEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNAL 337
             C      +T     ++L K+P          + +DL    +  L   S S    L  L
Sbjct: 5   NPCIEVVPNITYQCMDQKLSKVPDDIPS---STKNIDLSFNPLKILKSYSFSNFSELQWL 61

Query: 338 FLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVS 388
            L S C +          L  L  L ++   +Q         L  L+ L   
Sbjct: 62  DL-SRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 263 AHTKRLSL-----FGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLH 317
           + TK + L         S +  +      +  L L    +E +    +  + HL  L L 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSE---LQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 318 ETNIGCLPP-SISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQC--LPS 374
              I    P S S L +L  L       L       IG+L  L+ L+V+H  +    LP+
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVA-VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 375 EIGQLIELKYLRVSR 389
               L  L ++ +S 
Sbjct: 148 YFSNLTNLVHVDLSY 162

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 8/119 (6%)

Query: 274 PSSTLPDMPNCCEILTLILEGKRLEKL-PTSFFDYMCHLQLLDLHETNIGCLPPSI-SRL 331
            S+    +     +  L  +   L+++   S F  +  L  LD+  TN       I   L
Sbjct: 391 MSANFMGLEE---LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

Query: 332 INLNALFLRSSCSLLLQLPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVS 388
            +LN L + +  S      + +      L  LD+S  +++ +   +   L  L+ L +S
Sbjct: 448 TSLNTLKM-AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 4/103 (3%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRSSCSLL- 346
            LIL G  ++      F  +  L+ L   ET +  L    I +LI L  L + +   +  
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV-AHNFIHS 142

Query: 347 LQLPAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVS 388
            +LPA    L  L  +D+S+  +Q +    +  L E   + +S
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 7/125 (5%)

Query: 272 GFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISR 330
              S+   +  N   +  L L   +LE++    FD +  LQLL++   N+  L  S  ++
Sbjct: 463 NTLSNVFANTTN---LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 331 LINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIG--QLIELKYLRVS 388
           L +L+ L   S   +           + L   ++++  V C+       Q ++ +   + 
Sbjct: 520 LYSLSTLDC-SFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLV 578

Query: 389 RVENV 393
            VE +
Sbjct: 579 NVEQM 583

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 14/123 (11%), Positives = 40/123 (32%), Gaps = 16/123 (13%)

Query: 256 SFNKIGDAHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQL-- 313
           + N I               +   ++ N   ++ + L    ++ +  +   ++       
Sbjct: 136 AHNFIHSCK---------LPAYFSNLTN---LVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 314 --LDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQC 371
             LD+    I  +     + I L+ L LR + +    +   +  L  L +  +   + + 
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

Query: 372 LPS 374
             +
Sbjct: 244 ERN 246

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 11/107 (10%)

Query: 289 TLILEGKRLEKLP--TSFFDYMCHLQLLDLHETNIGCLPPSI--SRLINLNALFLRSSCS 344
           TLIL+  +L++L         M  LQ LD+ + ++         S   +L +L + S+  
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-- 409

Query: 345 LLLQLPAEIGR--LQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
               L   I R    ++++LD+   K++ +P ++ +L  L+ L V+ 
Sbjct: 410 ---ILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVAS 453

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 20/133 (15%), Positives = 46/133 (34%), Gaps = 9/133 (6%)

Query: 264 HTKRLSLFGFPSSTLPDMPNC-CEILTLI-LEGKRLEKLPTSFFDYMCHLQLLDLHETNI 321
               + L G       D      + L++  +         +  ++   ++ + +   +  
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 322 GCLP-PSISRLINLNALFLRSSCSLLLQLPAEI-GRLQKLEILDVSHTKVQCLPSEIG-- 377
             +     S++     L    S +LL     E  G L +LE L +   +++ L       
Sbjct: 313 RMVHMLCPSKISPFLHLDF--SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370

Query: 378 -QLIELKYLRVSR 389
            Q+  L+ L +S+
Sbjct: 371 TQMKSLQQLDISQ 383

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQ 348
            LI+   R++ L  S F +   L+ LDL    +  +       +NL  L L  S +    
Sbjct: 49  ILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDL--SFNAFDA 104

Query: 349 LP--AEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVEN 392
           LP   E G + +L+ L +S T ++         + +  + +   E 
Sbjct: 105 LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 6/118 (5%)

Query: 274 PSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLI 332
                  + +   +  L LE   L  +PT    ++  L +L L   NI  +      RL 
Sbjct: 144 SHRAFSGLNS---LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 333 NLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSR 389
            L  L + S    L  +         L  L ++H  +  +P   +  L+ L++L +S 
Sbjct: 201 RLKVLEI-SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 24/136 (17%), Positives = 53/136 (38%), Gaps = 5/136 (3%)

Query: 256 SFNKIGDAHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLD 315
           SF ++       +S + +  +  P+      + +L +    L  +P     ++ +L+ L+
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254

Query: 316 LHETNIGCLPPSI-SRLINLNALFLRSSCSLLLQLPAEI-GRLQKLEILDVSHTKVQCLP 373
           L    I  +  S+   L+ L  + L      L  +       L  L +L+VS  ++  L 
Sbjct: 255 LSYNPISTIEGSMLHELLRLQEIQLVG--GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312

Query: 374 SEI-GQLIELKYLRVS 388
             +   +  L+ L + 
Sbjct: 313 ESVFHSVGNLETLILD 328

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 286 EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCS 344
           E   L L   R++ L    F    HL+ L+L+E  +  + P   + L NL  L LRS  +
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS--N 90

Query: 345 LLLQLPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVSR 389
            L  +P  +   L  L  LD+S  K+  L   +   L  LK L V  
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 8/119 (6%)

Query: 274 PSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLI 332
                 ++ N   + TL L   RL+ +P   F  + +L  LD+ E  I  L   +   L 
Sbjct: 72  EPGAFNNLFN---LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128

Query: 333 NLNALFLRSSCSLLLQLPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVSR 389
           NL +L +    + L+ +       L  LE L +    +  +P+E    L  L  LR+  
Sbjct: 129 NLKSLEVGD--NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 4/103 (3%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLL 347
           TL L   RL  +P   F Y+  L+ L L    I  +P    +R+ +L  L L      L 
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL-GELKRLS 174

Query: 348 QLPAEI-GRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
            +       L  L  L+++   ++ +P+ +  LI+L  L +S 
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSG 216

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLL 347
            L L   +++ +  + F ++ HL++L L   +I  +     + L NLN L L    + L 
Sbjct: 68  LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD--NRLT 125

Query: 348 QLPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVSR 389
            +P      L KL+ L + +  ++ +PS    ++  L+ L +  
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 10/118 (8%)

Query: 274 PSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLI 332
                  + N   +  L L    L ++P      +  L  LDL   ++  + P S   L+
Sbjct: 177 SEGAFEGLSN---LRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLM 231

Query: 333 NLNALFLRSSCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVS 388
           +L  L++  S   +  +       LQ L  ++++H  +  LP ++   L  L+ + + 
Sbjct: 232 HLQKLWMIQS--QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 286 EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCS 344
           +   +I   K L ++P        + +LL+LHE  I  +  +    L +L  L L    +
Sbjct: 44  QFSKVICVRKNLREVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR--N 98

Query: 345 LLLQLPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVSR 389
            +  +       L  L  L++   ++  +P+     L +LK L +  
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 5/105 (4%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRSSCSLLL 347
            L L+   L +L    F +  +L  L L   +I  +      +  NL  L L S   L  
Sbjct: 77  VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL-SHNGLSS 135

Query: 348 QLPAEIGRLQKLEILDVSHTKVQCLPSE---IGQLIELKYLRVSR 389
                  +L+ L+ L +S+ K+Q L SE   I     LK L +S 
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 36/160 (22%), Positives = 57/160 (35%), Gaps = 16/160 (10%)

Query: 269 SLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-S 327
            L    ++T   +     +  L L    L  +    F ++  L+   L   NI  L   S
Sbjct: 233 QLSTTSNTTFLGLKWT-NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291

Query: 328 ISRLINLNALFLR--------SSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEI-GQ 378
           +  L N+  L L+        S  SL          L+ LE L++    +  + S +   
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 379 LIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLL 418
           LI LKYL +S      + T     + E       S L +L
Sbjct: 352 LINLKYLSLS-----NSFTSLRTLTNETFVSLAHSPLHIL 386

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 14/133 (10%)

Query: 267 RLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI----- 321
            L       S    + N   +  L L    +  +     + +  L++LDL   N+     
Sbjct: 465 ALKNVDSSPSPFQPLRN---LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521

Query: 322 ----GCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEI- 376
               G     +  L +L+ L L  S             L +L+I+D+    +  LP+ + 
Sbjct: 522 HANPGGPIYFLKGLSHLHILNL-ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580

Query: 377 GQLIELKYLRVSR 389
              + LK L + +
Sbjct: 581 NNQVSLKSLNLQK 593

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 27/124 (21%), Positives = 39/124 (31%), Gaps = 9/124 (7%)

Query: 268 LSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP- 326
           L L   P     +      I  L L   +L +LP + F     L  LD+    I  L P 
Sbjct: 14  LKLTQVPDDLPTN------ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67

Query: 327 SISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYL 385
              +L  L  L L     L             L  L +    +Q + +    +   L  L
Sbjct: 68  LCQKLPMLKVLNL-QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126

Query: 386 RVSR 389
            +S 
Sbjct: 127 DLSH 130

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 21/159 (13%)

Query: 269 SLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI 328
           SL      +   +     +  L +E   +  + ++ F  + +L+ L L  +       + 
Sbjct: 316 SLPKIDDFSFQWLKC---LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372

Query: 329 SRLINLNALFLR----SSCSLLLQLPAEIGRLQKLEILDVSHTK-VQCLP-SEIGQLIEL 382
              ++L    L     +   +          L  LE+LD+   +  Q L   E   L  +
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 383 KYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEEL 421
             + +S      N           ++ N  + +  L+ L
Sbjct: 433 FEIYLS-----YNKY-------LQLTRNSFALVPSLQRL 459

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 32/146 (21%), Positives = 49/146 (33%), Gaps = 25/146 (17%)

Query: 256 SFNKIGDAHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLD 315
             N+IG                   + N   I  + L   +  +L  + F  +  LQ L 
Sbjct: 413 GLNEIGQE---------LTGQEWRGLEN---IFEIYLSYNKYLQLTRNSFALVPSLQRLM 460

Query: 316 LHE---TNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCL 372
           L      N+   P     L NL  L L S+ ++       +  L+KLEILD+ H  +  L
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDL-SNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 373 PSE---------IGQLIELKYLRVSR 389
                       +  L  L  L +  
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLES 545

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 12/146 (8%)

Query: 256 SFNKIGDAHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLD 315
             N +      RL     P   +  +     +  L LE    +++P   F  +  L+++D
Sbjct: 512 QHNNL-----ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566

Query: 316 LHETNIGCLPPSI-SRLINLNALFLRSSCSLLLQLPAEI--GRLQKLEILDVSHTKVQCL 372
           L   N+  LP S+ +  ++L +L L+   +L+  +  ++     + L  LD+      C 
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQK--NLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

Query: 373 PSEIGQLIELKYLRVSRVENVGNHTH 398
              I     + ++  +        +H
Sbjct: 625 CESIAWF--VNWINETHTNIPELSSH 648

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 9/127 (7%)

Query: 269 SLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI 328
            +    S  L    N   +  L L   ++++     F  +  L  L L+   +G      
Sbjct: 156 KIQALKSEELDIFANS-SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 329 ----SRLINLNALFLRSSCSLLLQLPAEIGRLQ--KLEILDVSHTKVQCL-PSEIGQLIE 381
                   ++  L L S+  L          L+   L +LD+S+  +  +       L +
Sbjct: 215 LCLELANTSIRNLSL-SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273

Query: 382 LKYLRVS 388
           L+Y  + 
Sbjct: 274 LEYFFLE 280

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 309 CHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTK 368
              ++ D     +  +P  +    N+  L L +   L     A   R  +L  LDV    
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPT--NITVLNL-THNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 369 VQCL-PSEIGQLIELKYLRVSR 389
           +  L P    +L  LK L +  
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQH 82

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLL 347
           TL L    L  +P+  F+Y+  L+ L L    I  +P    +R+ +L  L L      L 
Sbjct: 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL-GELKKLE 185

Query: 348 QLPAEI-GRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
            +       L  L+ L++    ++ +P+ +  L+ L+ L +S 
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSG 227

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 8/107 (7%)

Query: 286 EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCS 344
           +   ++   + L ++P        + + L+L E NI  +       L +L  L L    +
Sbjct: 55  QFSKVVCTRRGLSEVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR--N 109

Query: 345 LLLQLPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVSR 389
            + Q+       L  L  L++    +  +PS     L +L+ L +  
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLL 347
            L L    ++ +    F ++ HL++L L   +I  +     + L +LN L L    + L 
Sbjct: 79  YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD--NWLT 136

Query: 348 QLPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVSR 389
            +P+     L KL  L + +  ++ +PS    ++  L  L +  
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLL 347
            + LE   ++ +P   F     L+ +DL    I  L P     L +LN+L L    + + 
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL--YGNKIT 93

Query: 348 QLPAEI-GRLQKLEILDVSHTKVQCLPSEIGQ-LIELKYLRVS 388
           +LP  +   L  L++L ++  K+ CL  +  Q L  L  L + 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLL 347
            + L   ++ +L    F  +  L  L L+   I  LP S+   L +L  L L  + + + 
Sbjct: 60  RIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL--NANKIN 117

Query: 348 QLPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLR 386
            L  +    L  L +L +   K+Q +       L  ++ + 
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 263 AHTKRLSLFGFPSSTLPDM--PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETN 320
           A T++L L     +TL D       ++  L L+  +L+ L    FD +  L  L L    
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 321 IGCLPPSI-SRLINLNALFLRSSCSLLLQLPAEI-GRLQKLEILDVSHTKVQCLPSEI-G 377
           +  LP  +   L  L+ L+L    + L  LP+ +  RL KL+ L ++  ++Q +P+    
Sbjct: 95  LASLPLGVFDHLTQLDKLYL--GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152

Query: 378 QLIELKYL 385
           +L  L+ L
Sbjct: 153 KLTNLQTL 160

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLL 347
           TL L   +L  LP   FD++  L  L L    +  LP  +  RL  L  L L  + + L 
Sbjct: 87  TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL--NTNQLQ 144

Query: 348 QLPAEI-GRLQKLEILDVSHTKVQCLP 373
            +PA    +L  L+ L +S  ++Q +P
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVP 171

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 17/154 (11%)

Query: 275 SSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINL 334
           ++          + +L      +  +     + +  L  L     NI  L   +S+  NL
Sbjct: 32  ATDTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNL 87

Query: 335 NALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR----- 389
             L      + L  L   +  L KL  L+    K+  L   + Q   L YL  +R     
Sbjct: 88  TYLAC--DSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE 141

Query: 390 --VENVGNHTHADAGSGEMISLNIISKLRLLEEL 421
             V +    T  D    + I+   ++    L  L
Sbjct: 142 IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTL 175

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 29/163 (17%), Positives = 53/163 (32%), Gaps = 18/163 (11%)

Query: 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP 325
             L        T  D+    ++ TL     ++ +L  S       L  L+    NI  L 
Sbjct: 151 TELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNK---LLNRLNCDTNNITKLD 207

Query: 326 PSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYL 385
             +++ I L  L    S + L ++   +  L +L   D S   +  L   +  L +L  L
Sbjct: 208 --LNQNIQLTFLDC--SSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTL 259

Query: 386 RVSR-------VENVGNHTHADAGSGEMISLNIISKLRLLEEL 421
              +       + +     +  A     I    ++    L  L
Sbjct: 260 HCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLL 302

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 29/127 (22%), Positives = 44/127 (34%), Gaps = 8/127 (6%)

Query: 263 AHTKRLSLFGFPSSTLPDM--PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETN 320
             T  L L      T           +  L L+   L KL       +  L  LDL    
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQ 88

Query: 321 IGCLPPSISRLINLNALFLRSSCSLLLQLPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQ 378
           +  LP     L  L  L +  S + L  LP      L +L+ L +   +++ LP  +   
Sbjct: 89  LQSLPLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 379 LIELKYL 385
             +L+ L
Sbjct: 147 TPKLEKL 153

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 5/124 (4%)

Query: 266 KRLSLFGFPSSTLPDMPNCCEILT-LILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL 324
             L L      +LP +      LT L +   RL  LP      +  LQ L L    +  L
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 325 PPSI-SRLINLNALFLRSSCSLLLQLPAEI-GRLQKLEILDVSHTKVQCLPSEIGQLIEL 382
           PP + +    L  L L  + + L +LPA +   L+ L+ L +    +  +P        L
Sbjct: 140 PPGLLTPTPKLEKLSL--ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

Query: 383 KYLR 386
            +  
Sbjct: 198 PFAF 201

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQ 348
            + L    +  L  +  +Y  +++ L ++  +     P IS L NL  L +     +   
Sbjct: 48  YITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNP-ISGLSNLERLRI-MGKDVTSD 103

Query: 349 LPAEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSR 389
               +  L  L +LD+SH+       ++I  L ++  + +S 
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLL 347
           TL +   +L+ LP   FD + +L  L L    +  LPP +   L  L  L L    + L 
Sbjct: 89  TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY--NELQ 146

Query: 348 QLPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLR 386
            LP  +  +L  L+ L + + +++ +P     +L ELK L+
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 263 AHTKRLSLFGFPSSTLPDMPNCCEILT----LILEGKRLEKLPTSFFDYMCHLQLLDLHE 318
           A TK+L L     S+LP        LT    L L   +L+ LP   F  + +L+ L + +
Sbjct: 37  ADTKKLDLQSNKLSSLP--SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94

Query: 319 TNIGCLPPSI-SRLINLNALFLRSSCSLLLQLPAEI-GRLQKLEILDVSHTKVQCLPSEI 376
             +  LP  +  +L+NL  L L    + L  LP  +   L KL  L + + ++Q LP  +
Sbjct: 95  NKLQALPIGVFDQLVNLAELRLDR--NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152

Query: 377 -GQLIELKYL 385
             +L  LK L
Sbjct: 153 FDKLTSLKEL 162

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 269 SLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI 328
           ++     +T   +     +  L L    +  L +  F+ +  L++L+L    I  +    
Sbjct: 251 NIKDPDQNTFAGLARS-SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309

Query: 329 -SRLINLNALFLRSSCSLLLQLPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYL 385
              L NL  L L  S +LL +L +     L K+  +D+    +  +  +    L +L+ L
Sbjct: 310 FYGLDNLQVLNL--SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367

Query: 386 RVSR 389
            +  
Sbjct: 368 DLRD 371

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 3/133 (2%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI--GCLPPSI-SRLINLNALFLRSSCSL 345
            L L   ++  L    F  + HL  L L+   +    L       L  L  L L  +   
Sbjct: 77  ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136

Query: 346 LLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGE 405
            L L    G+L  L+ +D S  ++  +     + ++ K L    +     ++      G+
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 406 MISLNIISKLRLL 418
            ++      L +L
Sbjct: 197 CMNPFRNMVLEIL 209

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 28/187 (14%), Positives = 62/187 (33%), Gaps = 38/187 (20%)

Query: 256 SFNKIGDAHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLD 315
           S+N +G+            SS    +P    +  + L+   +  +    F ++  LQ LD
Sbjct: 322 SYNLLGE----------LYSSNFYGLPK---VAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368

Query: 316 LHETNIGCLP--PSISRL--------------INLNALFLRSSCSLLLQLPAEIGRLQKL 359
           L +  +  +   PSI  +              +  N + L  +    L +   + R+  L
Sbjct: 369 LRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHL 428

Query: 360 EILDVSHTKVQCLPSE--IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRL 417
           +IL ++  +      +    +   L+ L +                   +  ++   L  
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLG-------ENMLQLAWETELCWDVFEGLSH 481

Query: 418 LEELIIE 424
           L+ L + 
Sbjct: 482 LQVLYLN 488

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 302 TSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLLQLPAEIGRLQKLE 360
           T     +   + L L    I  +  S    L  L  L L S  + L         L  L 
Sbjct: 17  TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR 76

Query: 361 ILDVSHTKVQCLPSEI-GQLIELKYLRVSR 389
           ILD+  +K+  L  +    L  L  LR+  
Sbjct: 77  ILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 9e-06
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLL 347
            L L    + +L      ++  L++L L    I  L   +     +L  L +  S + L 
Sbjct: 56  ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV--SHNRLQ 113

Query: 348 QLPAEIGRLQKLEILDVSHTKVQCLP--SEIGQLIELKYLRVS 388
            +      +  L  LD+S      LP   E G L +L +L +S
Sbjct: 114 NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 290 LILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQL 349
           L L   R+  L    F +   L+ LD+    +  +      + +L  L L  S +    L
Sbjct: 81  LRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC--CPMASLRHLDL--SFNDFDVL 136

Query: 350 P--AEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYL 385
           P   E G L KL  L +S  K + L       + L  +
Sbjct: 137 PVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCI 174

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 17/126 (13%), Positives = 34/126 (26%), Gaps = 25/126 (19%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSC----- 343
            L                 +  LQ L L    +           N+++L           
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416

Query: 344 ----SLLLQLPAEIGRL----------------QKLEILDVSHTKVQCLPSEIGQLIELK 383
                        I  L                 K+++LD+ + ++  +P ++  L  L+
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQ 476

Query: 384 YLRVSR 389
            L V+ 
Sbjct: 477 ELNVAS 482

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHE---TNIGCLPPSISRLINLNALFLRSSCSL 345
            L LE  +L+ LP   FD +  L  L L     +  GC   S     +L  L L  S + 
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL--SFNG 89

Query: 346 LLQLPAEIGRLQKLEILDVSHTKVQCLPSE--IGQLIELKYLRVSR 389
           ++ + +    L++LE LD  H+ ++ +        L  L YL +S 
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 282 PNC-CEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFL 339
             C C    +    K L  +PT           L+L    +  LP  +  +L  L  L L
Sbjct: 3   SRCSCSGTEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSL 59

Query: 340 RSSCSLLLQLPAEIGR-LQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
            S+        ++       L+ LD+S   V  + S    L +L++L    
Sbjct: 60  SSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 110

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 9/112 (8%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLL 347
            L L    L  L    F  +  L++L L+  +I  +  +    +  L  L+L  S + + 
Sbjct: 92  YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL--SQNQIS 149

Query: 348 QLPAEI----GRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGN 395
           + P E+     +L KL +LD+S  K++ LP     L +L     + +    N
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPL--TDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 19/141 (13%)

Query: 262 DAHTKRLSLFG------FPSSTLPDMPNCCEILT-LILEGKRLEKLPTSFFDYMCHLQLL 314
            ++T  L L            T   + N    L  L+L    L  + +  F  + +L+ L
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTN----LHSLLLSHNHLNFISSEAFVPVPNLRYL 93

Query: 315 DLHETNIGCLPPSI-SRLINLNALFLRSSCSLLLQLPAEI-GRLQKLEILDVSHTKVQCL 372
           DL   ++  L   + S L  L  L L    + ++ +       + +L+ L +S  ++   
Sbjct: 94  DLSSNHLHTLDEFLFSDLQALEVLLL--YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151

Query: 373 PSEI----GQLIELKYLRVSR 389
           P E+     +L +L  L +S 
Sbjct: 152 PVELIKDGNKLPKLMLLDLSS 172

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 5/100 (5%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLL 347
            LIL G +L+ LP   FD + +L+ L L E  +  LP  +  +L NL  L L    + L 
Sbjct: 89  YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH--NQLQ 146

Query: 348 QLPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYL 385
            LP  +  +L  L  LD+S+ ++Q LP  +  +L +LK L
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 7/129 (5%)

Query: 260 IGDAHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHET 319
                  ++        ++  +     +  L L G +L  +       + +L  L L   
Sbjct: 38  NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGN 95

Query: 320 NIGCLPPSI-SRLINLNALFLRSSCSLLLQLPAEI-GRLQKLEILDVSHTKVQCLPSEI- 376
            +  LP  +  +L NL  L L    + L  LP  +  +L  L  L+++H ++Q LP  + 
Sbjct: 96  QLQSLPNGVFDKLTNLKELVLVE--NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153

Query: 377 GQLIELKYL 385
            +L  L  L
Sbjct: 154 DKLTNLTEL 162

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 4/104 (3%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLL 347
            + L G R+  +P + F    +L +L LH   +  +  +  + L  L  L L S  + L 
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL-SDNAQLR 94

Query: 348 QLPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVSR 389
            +       L +L  L +    +Q L   +   L  L+YL +  
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 274 PSSTLPDMPNCCEILT-LILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRL 331
             +T   +      L  L L+   L++L    F  +  LQ L L +  +  LP      L
Sbjct: 97  DPATFHGLGR----LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 332 INLNALFLRSSCSLLLQLPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVS 388
            NL  LFL    + +  +P      L  L+ L +   +V  +       L  L  L + 
Sbjct: 153 GNLTHLFLHG--NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 8/119 (6%)

Query: 274 PSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLI 332
                  +     +  L L+   L+ LP   F  + +L  L LH   I  +P      L 
Sbjct: 121 GPGLFRGLAA---LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 333 NLNALFLRSSCSLLLQLPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVSR 389
           +L+ L L  +   +  +       L +L  L +    +  LP+E    L  L+YLR++ 
Sbjct: 178 SLDRLLLHQN--RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 27/165 (16%), Positives = 62/165 (37%), Gaps = 14/165 (8%)

Query: 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP 325
             L        ++  +     +  +     +L  +       +  L  + ++   I  + 
Sbjct: 49  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT 106

Query: 326 PSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYL 385
           P ++ L NL  L L    + +  +   +  L  L  L++S   +  + + +  L  L+ L
Sbjct: 107 P-LANLTNLTGLTL--FNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQL 161

Query: 386 RVSR----VENVGNHTHA---DAGSGEMISLNIISKLRLLEELII 423
                   ++ + N T     D  S ++  +++++KL  LE LI 
Sbjct: 162 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA 206

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 15/166 (9%)

Query: 266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP 325
           +RL +     S +  +     + +LI    ++  +       + +L  L L+   +  + 
Sbjct: 180 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIG 237

Query: 326 PSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYL 385
             ++ L NL  L L ++    +   A +  L KL  L +   ++  +   +  L  L  L
Sbjct: 238 T-LASLTNLTDLDLANN---QISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNL 292

Query: 386 RVSR-----VENVGNHT---HADAGSGEMISLNIISKLRLLEELII 423
            ++      +  + N     +       +  ++ +S L  L+ L  
Sbjct: 293 ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 338

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 20/148 (13%), Positives = 45/148 (30%), Gaps = 19/148 (12%)

Query: 276 STLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLN 335
             +  + N   +  L L    +  +  S    +  LQ L  +   +  +   ++ L N+N
Sbjct: 300 EDISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNNKVSDVSS-LANLTNIN 356

Query: 336 ALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGN 395
            L    +    +     +  L ++  L ++       P      + +     +       
Sbjct: 357 WLSAGHN---QISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV------ 407

Query: 396 HTHADAGSGEMISLNIISKLRLLEELII 423
                  +G +I+   IS      E  I
Sbjct: 408 -------TGALIAPATISDGGSYTEPDI 428

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query: 310 HLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKV 369
                 L +TN+       + L  +  L       L ++    +  L  L  ++ S+ ++
Sbjct: 25  EKMKTVLGKTNVTDTVS-QTDLDQVTTLQADR---LGIKSIDGVEYLNNLTQINFSNNQL 80

Query: 370 QCLPSEIGQLIELKYLRVS 388
             +   +  L +L  + ++
Sbjct: 81  TDIT-PLKNLTKLVDILMN 98

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 8/125 (6%)

Query: 268 LSLFGFPSSTLPDMPNCCEILTLI-LEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP 326
           L   G  S+  P      ++L L     +    + ++       LQ LDL   ++     
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 327 SI--SRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKY 384
           +        LN+L L S    L Q+P  +    KL +LD+S+ ++   PS   +L ++  
Sbjct: 246 APSCDWPSQLNSLNL-SFTG-LKQVPKGL--PAKLSVLDLSYNRLDRNPS-PDELPQVGN 300

Query: 385 LRVSR 389
           L +  
Sbjct: 301 LSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 21/134 (15%), Positives = 40/134 (29%), Gaps = 12/134 (8%)

Query: 267 RLSLFGFPSSTLPDMPNCCE--ILTLILEGKRLEKLPTSFFDYMCHLQLLDLHE---TNI 321
            +S     +  L ++    +  +  L +                  L  LDL +      
Sbjct: 130 NVSWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 322 GCLPPSI--SRLINLNALFLR--SSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIG 377
             L  ++   +   L  L LR     +      A      +L+ LD+SH  ++       
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 378 QLI--ELKYLRVSR 389
                +L  L +S 
Sbjct: 249 CDWPSQLNSLNLSF 262

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 9/116 (7%)

Query: 263 AHTKRLSLFGFPSSTLPDMPNCCEILT----LILEGKRLEKLPTSFFDYMCHLQLLDLHE 318
            + + L L     + L   P   + L     L L   +L  LP   FD +  L +LDL  
Sbjct: 40  TNAQILYLHDNQITKLE--PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97

Query: 319 TNIGCLPPSI-SRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLP 373
             +  LP ++  RL++L  LF+   C+ L +LP  I RL  L  L +   +++ +P
Sbjct: 98  NQLTVLPSAVFDRLVHLKELFM--CCNKLTELPRGIERLTHLTHLALDQNQLKSIP 151

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 13/141 (9%)

Query: 286 EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCS 344
            + +L L   R+  +  S      +LQ L L    I  +     S L +L  L L    +
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY--N 110

Query: 345 LLLQLPAEI-GRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGS 403
            L  L +     L  L  L++     + L  E      L  L++ RV N+   T      
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLG-ETSLFSHLTKLQILRVGNMDTFTK----- 164

Query: 404 GEMISLNIISKLRLLEELIIE 424
              I     + L  LEEL I+
Sbjct: 165 ---IQRKDFAGLTFLEELEID 182

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI--SRLINLNALFLRSSCSLL 346
            L L    L  L +S+F  +  L  L+L       L  +   S L  L  L +  +    
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV-GNMDTF 162

Query: 347 LQLPAEI-GRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVSR 389
            ++  +    L  LE L++  + +Q    +    +  + +L +  
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 22/108 (20%), Positives = 46/108 (42%), Gaps = 8/108 (7%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS------ISRLINLNAL-FLRS 341
            LIL  K+   L   F D    ++ L+L +T++     S       + LI       ++ 
Sbjct: 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261

Query: 342 SCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEI-GQLIELKYLRVS 388
           +   L Q+   + ++  L  L+ S  +++ +P  I  +L  L+ + + 
Sbjct: 262 TDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 8/108 (7%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRS---SCS 344
            L ++   L+         + ++  L LH      L         ++  L LR       
Sbjct: 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237

Query: 345 LLLQLPAEI----GRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVS 388
              +L         +      + ++   +  +   + Q+  L  L  S
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 33/169 (19%), Positives = 70/169 (41%), Gaps = 15/169 (8%)

Query: 263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIG 322
           A+  +++      +      +   I TL   G  +  +      Y+ +L  L+L +  I 
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT 76

Query: 323 CLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIEL 382
            L P +  L  +  L L  S + L  + A I  LQ ++ LD++ T++  + + +  L  L
Sbjct: 77  DLAP-LKNLTKITELEL--SGNPLKNVSA-IAGLQSIKTLDLTSTQITDV-TPLAGLSNL 131

Query: 383 KYL-----RVSRVENVGNHT---HADAGSGEMISLNIISKLRLLEELII 423
           + L     +++ +  +   T   +   G+ ++  L  ++ L  L  L  
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 263 AHTKRLSLFGFPSSTLPDMP--NCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETN 320
           A T  L L      +LP+        +  L L G +L+ LP   F+ +  L  L+L    
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 321 IGCLPPSI-SRLINLNALFLRSSCSLLLQLPAEI-GRLQKLEILDVSHTKVQCLP 373
           +  LP  +  +L  L  L L  + + L  LP  +  +L +L+ L +   +++ +P
Sbjct: 88  LQSLPNGVFDKLTQLKELAL--NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 15/108 (13%), Positives = 45/108 (41%), Gaps = 10/108 (9%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRSSCSLLL 347
            L L+G ++ K+  +    + +L  L L   +I  +   S++   +L  L L  + + L+
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL--NNNKLV 253

Query: 348 QLPAEIGRLQKLEILDVSHTKVQCLPSE-------IGQLIELKYLRVS 388
           ++P  +   + ++++ + +  +  + S          +      + + 
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 14/121 (11%)

Query: 276 STLPDMPNC-----CEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SIS 329
              P  P C     C +  +      LEK+P           LLDL    I  +      
Sbjct: 17  EIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPP---DTALLDLQNNKITEIKDGDFK 73

Query: 330 RLINLNALFLRSSCSLLLQLPAEIGR-LQKLEILDVSHTKVQCLPSEIGQLIELKYLRVS 388
            L NL+ L L    + + ++       L KLE L +S  +++ LP        L+ LRV 
Sbjct: 74  NLKNLHTLIL--INNKISKISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVH 129

Query: 389 R 389
            
Sbjct: 130 E 130

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 10/128 (7%)

Query: 266 KRLSLFGFPSSTLPDMPNCCEILTL----ILEGKRLEKLPTSFFDYMC-HLQLLDLHETN 320
           K L +F       PD+             I +   +  +P + F  +C     L L+   
Sbjct: 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167

Query: 321 IGCLPPSISRLINLNALFLRSSCSLLLQLPAEI--GRLQKLEILDVSHTKVQCLPSEIGQ 378
              +         L+A++L +    L  +  +   G      +LDVS T V  LPS+   
Sbjct: 168 FTSVQGYAFNGTKLDAVYL-NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG-- 224

Query: 379 LIELKYLR 386
           L  LK L 
Sbjct: 225 LEHLKELI 232

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 10/108 (9%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRSSCSLLL 347
            L L+  +++ +          L  L L    I  +     S L  L  L L  +   L 
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL-DNNK-LS 254

Query: 348 QLPAEIGRLQKLEILDVSHTKVQCLPSEI-------GQLIELKYLRVS 388
           ++PA +  L+ L+++ +    +  +            +      + + 
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 9/113 (7%)

Query: 282 PNC-CEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFL 339
             C C     + +  ++ ++P+       +   L    T +  +     S   +L  + +
Sbjct: 5   RICHCSNRVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 61

Query: 340 RSSCSLLLQLPAEI-GRLQKLEILDVSHT-KVQCLPSEI-GQLIELKYLRVSR 389
            S   +L  + A++   L KL  + +     +  +  E    L  L+YL +S 
Sbjct: 62  -SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 6/119 (5%)

Query: 274 PSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLI 332
            +    ++P   EI   I +   L  +    F  + +LQ L +  T I  LP       +
Sbjct: 71  EADVFSNLPKLHEIR--IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 333 NLNALFLRSSCSLLLQLPAEI--GRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR 389
               L ++ + + +  +      G   +  IL ++   +Q + +      +L  L +S 
Sbjct: 129 QKVLLDIQDNIN-IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.2 bits (94), Expect = 9e-04
 Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSI-SRLINLNALFLRSSCSLL 346
            L     +L  +    F     L+ +++ + ++   +   + S L  L+ + +    + L
Sbjct: 34  ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI-EKANNL 92

Query: 347 LQLPAEI-GRLQKLEILDVSHTKVQCLPSEIGQ-LIELKYLRVSR 389
           L +  E    L  L+ L +S+T ++ LP       ++   L +  
Sbjct: 93  LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFLRS 341
            ++L   RLE +    F  +  L+ L L    I C+       L ++  L L  
Sbjct: 85  EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 14/116 (12%), Positives = 39/116 (33%), Gaps = 7/116 (6%)

Query: 263 AHTKRLSLFGFPSSTLPDM---PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHET 319
            +T  L L     + L          ++  +     ++  +    F+    +  + L   
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 320 NIGCLPPSI-SRLINLNALFLRSSCSLLLQLPAEI-GRLQKLEILDVSHTKVQCLP 373
            +  +   +   L +L  L LRS+   +  +  +    L  + +L +   ++  + 
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNR--ITCVGNDSFIGLSSVRLLSLYDNQITTVA 145

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 265 TKRLSLFGFPSSTLPDMPNCCEILT-LILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGC 323
              L L G   + +P   +  + LT + L   R+  L    F  M  L  L L    + C
Sbjct: 33  VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 324 LPPSI-SRLINLNALFLRS 341
           +PP     L +L  L L  
Sbjct: 93  IPPRTFDGLKSLRLLSLHG 111

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 44/192 (22%)

Query: 258 NKIGD-------AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCH 310
             I         A T + +L     +          I  +I     ++ +      Y+ +
Sbjct: 12  TPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV--QGIQYLPN 69

Query: 311 LQLLDLHETNIGCLPPSISRLINLNALFLR----SSCSLLLQLPA--------------- 351
           +  L L+   +  + P ++ L NL  LFL        S L  L                 
Sbjct: 70  VTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128

Query: 352 EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNI 411
            +  L +LE L + + K+  + + + +L +L  L +       N         ++  +  
Sbjct: 129 GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLE-----DN---------QISDIVP 173

Query: 412 ISKLRLLEELII 423
           ++ L  L+ L +
Sbjct: 174 LAGLTKLQNLYL 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	424
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	100.0
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.69
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.66
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.63
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.61
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.6
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.59
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.59
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.58
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.58
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.57
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.57
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.57
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.56
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.56
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.56
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.56
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.56
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.55
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.55
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.55
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.53
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.53
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.53
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.52
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.52
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.52
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.52
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.5
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.49
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.49
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.48
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.48
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.48
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.47
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.47
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.47
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.47
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.47
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.47
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.46
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.46
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.46
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.46
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.45
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.44
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.44
2fna_A	357	Conserved hypothetical protein; structural genomic	99.44
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.44
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.43
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.43
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.43
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.43
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.43
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.43
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.43
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.43
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.42
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.42
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.42
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.41
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.41
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.41
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.4
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.4
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.4
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.4
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.4
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.4
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.4
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.39
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.39
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.39
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.38
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.37
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.37
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.37
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.35
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.35
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.35
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.34
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.34
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.34
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.34
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.34
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.33
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.31
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.3
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.27
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.26
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.26
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.22
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.21
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.2
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.19
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.19
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.17
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.16
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.14
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.1
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.02
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.02
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.85
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.83
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.81
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.78
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.76
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.7
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	98.65
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.64
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.59
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.55
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.54
2chq_A	319	Replication factor C small subunit; DNA-binding pr	98.53
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.52
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.5
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.49
3bos_A	242	Putative DNA replication factor; P-loop containing	98.49
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.47
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.46
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	98.39
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.39
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.36
3pvs_A	447	Replication-associated recombination protein A; ma	98.35
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.35
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.35
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.35
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	98.31
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.29
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.29
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	98.29
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	98.28
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.28
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.28
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.27
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	98.27
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.23
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.2
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.19
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	98.18
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.16
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.16
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.14
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.13
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.13
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.08
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.08
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	98.05
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.05
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.03
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	98.01
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.99
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.96
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.92
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.91
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.8
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.77
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.77
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.76
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.74
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.74
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.73
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.73
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.68
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.67
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.65
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.63
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.62
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.62
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	97.59
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.55
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.54
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.52
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.52
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.52
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.52
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.49
3io5_A	333	Recombination and repair protein; storage dimer, i	97.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.45
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.45
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.41
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.4
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.39
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.37
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.37
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.36
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.34
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.33
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.3
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.27
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.27
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.25
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.23
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.19
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.18
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.16
3co5_A	143	Putative two-component system transcriptional RES	97.13
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.1
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.99
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.97
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	96.96
2qgz_A	308	Helicase loader, putative primosome component; str	96.96
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.95
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.87
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	96.85
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.84
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.76
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.76
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.71
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.67
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.65
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.61
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.6
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.59
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.58
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.57
1via_A	175	Shikimate kinase; structural genomics, transferase	96.55
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.54
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.53
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.52
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.52
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.51
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	96.51
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	96.49
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.49
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.48
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.45
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.44
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.44
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.43
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.42
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.41
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.4
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.4
2xxa_A	433	Signal recognition particle protein; protein trans	96.4
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.39
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.33
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.33
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.32
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.26
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.26
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.26
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.25
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.24
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.24
3ice_A	422	Transcription termination factor RHO; transcriptio	96.23
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.23
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.22
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.21
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.21
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.21
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.2
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.2
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.17
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.15
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.15
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.14
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.13
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.11
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.11
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	96.1
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.08
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.07
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.07
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.07
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.06
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.05
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.05
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.05
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.05
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.04
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.04
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.02
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.02
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.02
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.0
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.0
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.99
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.99
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.96
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.95
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.93
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.93
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.93
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	95.92
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.92
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.91
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.91
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.91
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.9
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.9
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.89
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.88
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.87
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.86
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.83
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.82
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.81
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.79
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.79
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.78
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.76
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.74
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.74
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.74
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.73
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.72
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.72
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	95.69
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.69
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.69
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.68
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.68
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.66
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.65
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.65
3fwy_A	314	Light-independent protochlorophyllide reductase I	95.64
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.64
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.62
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.6
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	95.6
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.59
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.57
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.55
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.54
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.52
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	95.52
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.51
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.51
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.5
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.47
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.47
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.46
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.46
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.44
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.44
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.43
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.43
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.4
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.39
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.39
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.39
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.37
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.37
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.35
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.33
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	95.33
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.3
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.29
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.29
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.29
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	95.25
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.22
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	95.19
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.18
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.17
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.16
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.16
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.12
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.12
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.11
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.1
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.09
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.08
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.07
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.06
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.01
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.01
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.98
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	94.98
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.97
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	94.96
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.95
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	94.94
1b0u_A	262	Histidine permease; ABC transporter, transport pro	94.93
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	94.93
3end_A	307	Light-independent protochlorophyllide reductase ir	94.92
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	94.9
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	94.89
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	94.89
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	94.88
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.88
1sgw_A	214	Putative ABC transporter; structural genomics, P p	94.87
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.84
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	94.84
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	94.83
1g6h_A	257	High-affinity branched-chain amino acid transport	94.83
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	94.81
1ji0_A	240	ABC transporter; ATP binding protein, structural g	94.81
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	94.8
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	94.8
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.77
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	94.76
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	94.74
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	94.73
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	94.71
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	94.7
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	94.65
2eyu_A	261	Twitching motility protein PILT; pilus retraction	94.65
3l0o_A	427	Transcription termination factor RHO; helicase, RH	94.64
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	94.62
2og2_A	359	Putative signal recognition particle receptor; nuc	94.62
2ghi_A	260	Transport protein; multidrug resistance protein, M	94.61
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	94.61
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.61
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.58
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	94.57
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	94.53
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	94.52
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	94.52
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	94.51
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.49
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	94.47
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.45
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	94.43
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	94.39
2wji_A	165	Ferrous iron transport protein B homolog; membrane	94.38
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	94.37
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	94.34
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	94.28
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	94.26
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.26
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	94.26
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	94.24
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	94.22
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.22
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	94.19
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	94.13
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.08
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	94.07
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	94.05
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.05
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.04
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	93.97
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	93.95
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	93.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	93.94
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	93.91
2r44_A	331	Uncharacterized protein; putative ATPase, structur	93.9
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.9
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	93.89
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	93.89
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.88
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	93.85
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	93.78
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	93.77
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	93.77
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	93.75
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	93.74
2ged_A	193	SR-beta, signal recognition particle receptor beta	93.73
3cwq_A	209	Para family chromosome partitioning protein; alpha	93.73
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	93.72
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	93.72

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=100.00  E-value=9.3e-36  Score=297.27  Aligned_cols=240  Identities=19%  Similarity=0.204  Sum_probs=190.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHH--hhccCCCCceEEEEEeccCC--CHHHHHHHHHHHhcccc--------cccChhHH
Q 037045            1 MKKICIWGPLGVGKTTIMENLHH--SIGESRRFDIIFWENINTDG--NIRDIQEIILERLKVNA--------KELNNDLR   68 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~--------~~~~~~~~   68 (424)
                      +++|+|+|+||+||||||+++|+  +..+..+|++++|++++...  ++..+++.|+.+++...        ...+....
T Consensus       152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l  231 (549)
T 2a5y_B          152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVL  231 (549)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHH
Confidence            37899999999999999999998  45568899999999999875  78999999999998652        12234456


Q ss_pred             HHHHHHHhccC-cEEEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhhhc--c-cCceEEecCCCHHHHHHHHHHHhc
Q 037045           69 ADIISKELNDR-SYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCW--Q-ADGVIHVQQLCQREAKKLFWEVVG  144 (424)
Q Consensus        69 ~~~l~~~l~~~-~~LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~~~--~-~~~~~~l~~l~~~~~~~l~~~~~~  144 (424)
                      ...+++.++++ ++||||||+|+..++ .+  + ..+||+||||||++.++.  . ....+++++|+.++|++||.+.++
T Consensus       232 ~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~--~-~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~  307 (549)
T 2a5y_B          232 KRMICNALIDRPNTLFVFDDVVQEETI-RW--A-QELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGM  307 (549)
T ss_dssp             HHHHHHHHTTSTTEEEEEEEECCHHHH-HH--H-HHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSC
T ss_pred             HHHHHHHHcCCCcEEEEEECCCCchhh-cc--c-ccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhc
Confidence            78899999996 999999999998765 33  1 127999999999999887  2 336799999999999999999987


Q ss_pred             ccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCcccccchhhhhHHHhhhhccCCcchH
Q 037045          145 VHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQQ  224 (424)
Q Consensus       145 ~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k  224 (424)
                      ... ..+..++.+++|++.|+|+|+||.++|+.++.. .   |... +.+.. ..... ....+..++..||+.|+++.|
T Consensus       308 ~~~-~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~-~l~~~-~~~~i~~~l~~Sy~~L~~~lk  379 (549)
T 2a5y_B          308 PMP-VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNN-KLESR-GLVGVECITPYSYKSLAMALQ  379 (549)
T ss_dssp             CCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHH-HHHHH-CSSTTCCCSSSSSSSHHHHHH
T ss_pred             CCC-CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHH-Hhhcc-cHHHHHHHHhcccccccHHHH
Confidence            653 246778889999999999999999999998765 3   3332 33332 11110 124688889999999988899


Q ss_pred             hHHh-----------hhhhccCCCCCChHHHHhhhhhc--chhhh
Q 037045          225 HCLL-----------GWAIFSTGLELSQDYIIDGWAAQ--KFLAS  256 (424)
Q Consensus       225 ~~~~-----------~la~fp~~~~i~~~~Li~~w~~~--~~~~~  256 (424)
                      .||.           +||+||+++.++    +..|+++  ||+.+
T Consensus       380 ~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~  420 (549)
T 2a5y_B          380 RCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICS  420 (549)
T ss_dssp             HHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC----
T ss_pred             HHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceecc
Confidence            9998           999999999988    7899999  89865

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.97  E-value=2e-31  Score=271.26  Aligned_cols=225  Identities=16%  Similarity=0.218  Sum_probs=179.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCce-EEEEEeccCCCHHHHHHHHHHHhcccc-------c-----ccChhH
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDI-IFWENINTDGNIRDIQEIILERLKVNA-------K-----ELNNDL   67 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~-----~~~~~~   67 (424)
                      .++|+|+||||+||||||++++++..+..+|+. ++|++++...+...++..++..++...       .     ..+.++
T Consensus       150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~lee  229 (1221)
T 1vt4_I          150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS  229 (1221)
T ss_dssp             SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHH
T ss_pred             CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHH
Confidence            379999999999999999999987655778875 999999999898888888877654321       0     112234


Q ss_pred             HHHHHHHHh---ccCcEEEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhhhc--ccCceEEec------CCCHHHHH
Q 037045           68 RADIISKEL---NDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCW--QADGVIHVQ------QLCQREAK  136 (424)
Q Consensus        68 ~~~~l~~~l---~~~~~LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~~~--~~~~~~~l~------~l~~~~~~  136 (424)
                      ....+++.+   .++++||||||+|+...|+.++     +||+||||||++.+..  .....++++      +|+.+||+
T Consensus       230 L~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-----pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~  304 (1221)
T 1vt4_I          230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-----LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK  304 (1221)
T ss_dssp             HHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-----SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHH
T ss_pred             HHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-----CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHH
Confidence            455666655   5799999999999988888762     6899999999998874  222355666      89999999


Q ss_pred             HHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCC-cchHHHHHHHHHhhhcCcccccchhhhhHHHhhh
Q 037045          137 KLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQ-SEVAIWRATADELRLTSSEEKKELEEVDRFFTLV  215 (424)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~s  215 (424)
                      +||.+.....   .   .+...+   .|+|+|+||.++|+.++.. ...+.|...             ....+..++..|
T Consensus       305 eLF~~~~g~~---~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~-------------~~~~I~aaLelS  362 (1221)
T 1vt4_I          305 SLLLKYLDCR---P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV-------------NCDKLTTIIESS  362 (1221)
T ss_dssp             HHHHHHHCCC---T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC-------------SCHHHHHHHHHH
T ss_pred             HHHHHHcCCC---H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC-------------ChhHHHHHHHHH
Confidence            9999985432   1   122333   3999999999999999987 356778652             125899999999


Q ss_pred             hccCCcch-HhHHhhhhhccCCCCCChHHHHhhhhhcc
Q 037045          216 YKNLSLEQ-QHCLLGWAIFSTGLELSQDYIIDGWAAQK  252 (424)
Q Consensus       216 ~~~L~~~~-k~~~~~la~fp~~~~i~~~~Li~~w~~~~  252 (424)
                      |+.|+++. |+||++||+||++..|+.+.++..|.++|
T Consensus       363 Yd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG  400 (1221)
T 1vt4_I          363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI  400 (1221)
T ss_dssp             HHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC
T ss_pred             HHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC
Confidence            99999999 99999999999999999999999999875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=6.1e-30  Score=279.91  Aligned_cols=241  Identities=17%  Similarity=0.257  Sum_probs=194.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhcc-CC-CCceEEEEEeccCCC--HHHHHHHHHHHhcccc-----cccChhHHHHH
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGE-SR-RFDIIFWENINTDGN--IRDIQEIILERLKVNA-----KELNNDLRADI   71 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~-~~-~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~-----~~~~~~~~~~~   71 (424)
                      .++|+|+|+||+||||||++++++... .. .++.++|++++....  ....+..++..+....     ...+.++....
T Consensus       147 ~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  226 (1249)
T 3sfz_A          147 PGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDR  226 (1249)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHH
Confidence            378999999999999999999988532 34 447899999988543  3445666777776543     34556777788


Q ss_pred             HHHHhccC--cEEEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhhhc---ccCceEEecC-CCHHHHHHHHHHHhcc
Q 037045           72 ISKELNDR--SYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCW---QADGVIHVQQ-LCQREAKKLFWEVVGV  145 (424)
Q Consensus        72 l~~~l~~~--~~LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~~~---~~~~~~~l~~-l~~~~~~~l~~~~~~~  145 (424)
                      ++..+.++  |+||||||+|+..+++.+     .++++||||||++.+..   .....++++. |+++||++||...++.
T Consensus       227 l~~~l~~~~~~~LlvlDd~~~~~~~~~~-----~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~  301 (1249)
T 3sfz_A          227 LRVLMLRKHPRSLLILDDVWDPWVLKAF-----DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM  301 (1249)
T ss_dssp             HHHHTSSSSCSCEEEEESCCCHHHHTTT-----CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTS
T ss_pred             HHHHHhccCCCEEEEEecCCCHHHHHhh-----cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCC
Confidence            88888777  999999999998777765     56899999999998874   5567888985 9999999999988854


Q ss_pred             cCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCcccc-----cchhhhhHHHhhhhccCC
Q 037045          146 HLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEK-----KELEEVDRFFTLVYKNLS  220 (424)
Q Consensus       146 ~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~i~~~l~~s~~~L~  220 (424)
                      .   .+..++.+++|+++|+|+||||+++|++++...  ..|...++.+........     ...+.+.+++..||+.|+
T Consensus       302 ~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~  376 (1249)
T 3sfz_A          302 K---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR  376 (1249)
T ss_dssp             C---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSC
T ss_pred             C---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCC
Confidence            3   233445789999999999999999999998863  468888888876332221     122579999999999999


Q ss_pred             cchHhHHhhhhhccCCCCCChHHHHhhhhhc
Q 037045          221 LEQQHCLLGWAIFSTGLELSQDYIIDGWAAQ  251 (424)
Q Consensus       221 ~~~k~~~~~la~fp~~~~i~~~~Li~~w~~~  251 (424)
                      ++.|+||.+||+||+++.|+.+.++..|.++
T Consensus       377 ~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~  407 (1249)
T 3sfz_A          377 EDIKDYYTDLSILQKDVKVPTKVLCVLWDLE  407 (1249)
T ss_dssp             TTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC
T ss_pred             HHHHHHHHHhCccCCCCeeCHHHHHHHhCCC
Confidence            9999999999999999999999999999754

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.96  E-value=6.3e-28  Score=243.86  Aligned_cols=239  Identities=17%  Similarity=0.253  Sum_probs=184.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhcc-CCCC-ceEEEEEeccCCCHHHHHHHH---HHHhccc-----ccccChhHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGE-SRRF-DIIFWENINTDGNIRDIQEII---LERLKVN-----AKELNNDLRADI   71 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~i---~~~l~~~-----~~~~~~~~~~~~   71 (424)
                      ++|+|+|+||+||||||.+++++... ..+| +.++|++++.. +...+...+   ...++..     ....+.+.....
T Consensus       148 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~  226 (591)
T 1z6t_A          148 GWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDR  226 (591)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHH
T ss_pred             ceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHH
Confidence            68999999999999999999987644 4668 58999999876 344444444   3444421     134455666777


Q ss_pred             HHHHhcc--CcEEEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhhhc-ccCceEEe---cCCCHHHHHHHHHHHhcc
Q 037045           72 ISKELND--RSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCW-QADGVIHV---QQLCQREAKKLFWEVVGV  145 (424)
Q Consensus        72 l~~~l~~--~~~LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~~~-~~~~~~~l---~~l~~~~~~~l~~~~~~~  145 (424)
                      +...+.+  +++||||||+|+...++.+     .++++||||||...+.. .....+++   ++|+.+|++++|...++.
T Consensus       227 l~~~l~~~~~~~LLVLDdv~~~~~l~~l-----~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~  301 (591)
T 1z6t_A          227 LRILMLRKHPRSLLILDDVWDSWVLKAF-----DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNM  301 (591)
T ss_dssp             HHHHHHHTCTTCEEEEEEECCHHHHHTT-----CSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTS
T ss_pred             HHHHHccCCCCeEEEEeCCCCHHHHHHh-----cCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCC
Confidence            7777766  7899999999987766654     45899999999998775 22345555   489999999999998865


Q ss_pred             cCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCcccc-----cchhhhhHHHhhhhccCC
Q 037045          146 HLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEK-----KELEEVDRFFTLVYKNLS  220 (424)
Q Consensus       146 ~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~i~~~l~~s~~~L~  220 (424)
                      .   .....+.+.+|++.|+|+|+||..+|..++..  ...|...++.+........     .....+..++..+|+.|+
T Consensus       302 ~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~  376 (591)
T 1z6t_A          302 K---KADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR  376 (591)
T ss_dssp             C---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSC
T ss_pred             C---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCC
Confidence            3   12224578899999999999999999999886  2468888888776222111     112589999999999999


Q ss_pred             cchHhHHhhhhhccCCCCCChHHHHhhhhhc
Q 037045          221 LEQQHCLLGWAIFSTGLELSQDYIIDGWAAQ  251 (424)
Q Consensus       221 ~~~k~~~~~la~fp~~~~i~~~~Li~~w~~~  251 (424)
                      ++.|.||.++|+||++..++.+.+...|..+
T Consensus       377 ~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~  407 (591)
T 1z6t_A          377 EDIKDYYTDLSILQKDVKVPTKVLCILWDME  407 (591)
T ss_dssp             TTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC
T ss_pred             HHHHHHHHHccccCCCCccCHHHHHHHhccC
Confidence            9999999999999999999999999999665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.69  E-value=2e-16  Score=147.50  Aligned_cols=159  Identities=26%  Similarity=0.336  Sum_probs=119.8

Q ss_pred             cceeEEEeeccCCCCCCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcCChhhhc---------c
Q 037045          263 AHTKRLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSISR---------L  331 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~---------l  331 (424)
                      ++|++|++++|.+..+|. +..+++|++|++++|.++.+|.. +..+++|++|++++|+. +.+|..++.         +
T Consensus       104 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l  182 (328)
T 4fcg_A          104 SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQGL  182 (328)
T ss_dssp             TTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred             CCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence            678888888888887664 57788888888888888877766 67788888888888655 667766554         8


Q ss_pred             cccceeeecccccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCC---------
Q 037045          332 INLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAG---------  402 (424)
Q Consensus       332 ~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~---------  402 (424)
                      ++|++|++  ..+.+..+|..++.+++|+.|++++|.++.+|..++.+++|++|++++|.+.+.+|.....         
T Consensus       183 ~~L~~L~L--~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  260 (328)
T 4fcg_A          183 VNLQSLRL--EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL  260 (328)
T ss_dssp             TTCCEEEE--EEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred             CCCCEEEC--cCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence            88888888  6777778888888888888888888888888877888888888888888777666551111         


Q ss_pred             ---CCCCcChhhhhccccCceeecC
Q 037045          403 ---SGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       403 ---~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                         .........++++++|++|+|+
T Consensus       261 ~~n~~~~~~p~~~~~l~~L~~L~L~  285 (328)
T 4fcg_A          261 KDCSNLLTLPLDIHRLTQLEKLDLR  285 (328)
T ss_dssp             TTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred             CCCCchhhcchhhhcCCCCCEEeCC
Confidence               1122334467788888888774

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.66  E-value=7.8e-16  Score=143.47  Aligned_cols=132  Identities=26%  Similarity=0.425  Sum_probs=119.3

Q ss_pred             cccceeEEEeeccCCCCCCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeee
Q 037045          261 GDAHTKRLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFL  339 (424)
Q Consensus       261 ~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l  339 (424)
                      ...+++.|++++|.++.+|. +..+++|++|++++|.++.+|.. +..+++|++|++++|.+..+|..++.+++|++|++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            34789999999999999775 58899999999999999988876 78899999999999999999999999999999999


Q ss_pred             cccccccccCChhhhc---------cCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCC
Q 037045          340 RSSCSLLLQLPAEIGR---------LQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVG  394 (424)
Q Consensus       340 ~~~~~~~~~lp~~~~~---------l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~  394 (424)
                      + .++..+.+|..++.         +++|+.|++++|.++.+|..++++++|++|++++|.+.+
T Consensus       158 ~-~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          158 R-ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             E-EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC
T ss_pred             C-CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc
Confidence            4 55777888887765         999999999999999999999999999999999998764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.65  E-value=1.2e-15  Score=138.47  Aligned_cols=148  Identities=28%  Similarity=0.422  Sum_probs=111.3

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeeecc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFLRS  341 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l~~  341 (424)
                      ++|+.|++++|.+..++.+..+++|++|++++|.++++++..+..+++|++|++++|.+..+|+. ++.+++|++|++  
T Consensus        63 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--  140 (272)
T 3rfs_A           63 PNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL--  140 (272)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC--
T ss_pred             CCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC--
Confidence            77888888888888777777888888888888888887777667788888888888888666543 677888888888  


Q ss_pred             cccccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCc
Q 037045          342 SCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLE  419 (424)
Q Consensus       342 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  419 (424)
                      +++.+..+|.. ++.+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+..+            ..++.+++|+
T Consensus       141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~l~~L~  208 (272)
T 3rfs_A          141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD------------GVFDRLTSLQ  208 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------------TTTTTCTTCC
T ss_pred             CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH------------HHHhCCcCCC
Confidence            67777777654 57788888888888887777655 5778888888888887654321            2456777777


Q ss_pred             eeecC
Q 037045          420 ELIIE  424 (424)
Q Consensus       420 ~L~l~  424 (424)
                      +|+++
T Consensus       209 ~L~l~  213 (272)
T 3rfs_A          209 YIWLH  213 (272)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            77763

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=1.1e-15  Score=131.56  Aligned_cols=143  Identities=18%  Similarity=0.187  Sum_probs=126.0

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCc-CChhhhcccccceeeecc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGC-LPPSISRLINLNALFLRS  341 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~p~~~~~l~~L~~l~l~~  341 (424)
                      ++++.|++++|.+..+|.+..+++|+.|++++|.++..+.  +..+++|++|++++|.+.. .|..++.+++|++|++  
T Consensus        44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L--  119 (197)
T 4ezg_A           44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI--  119 (197)
T ss_dssp             HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC--
T ss_pred             CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe--
Confidence            7899999999999998888999999999999998887764  7889999999999999954 6788999999999999  


Q ss_pred             cccccc-cCChhhhccCCCCEEEecCCc-CcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCc
Q 037045          342 SCSLLL-QLPAEIGRLQKLEILDVSHTK-VQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLE  419 (424)
Q Consensus       342 ~~~~~~-~lp~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  419 (424)
                      +++.+. ..|..++.+++|+.|++++|. ++.+| .+..+++|++|++++|.+.              .+..+..+++|+
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~--------------~~~~l~~l~~L~  184 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH--------------DYRGIEDFPKLN  184 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC--------------CCTTGGGCSSCC
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc--------------ChHHhccCCCCC
Confidence            777776 467789999999999999998 88887 6999999999999999653              344788999999


Q ss_pred             eeecC
Q 037045          420 ELIIE  424 (424)
Q Consensus       420 ~L~l~  424 (424)
                      +|+++
T Consensus       185 ~L~l~  189 (197)
T 4ezg_A          185 QLYAF  189 (197)
T ss_dssp             EEEEC
T ss_pred             EEEee
Confidence            99875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.63  E-value=4e-15  Score=133.24  Aligned_cols=148  Identities=25%  Similarity=0.370  Sum_probs=110.4

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l  339 (424)
                      ++++.|++++|.+..++  .+..+++|+.|++++|.++..++..+..+++|++|++++|.+..+| ..+..+++|++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            56788888888888754  3577888888888888888877766777888888888888886665 44677888888888


Q ss_pred             cccccccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcccc
Q 037045          340 RSSCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRL  417 (424)
Q Consensus       340 ~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~  417 (424)
                        +++.+..+|.. +..+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+..            ...+..+++
T Consensus       115 --~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~  180 (251)
T 3m19_A          115 --GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP------------HGAFDRLGK  180 (251)
T ss_dssp             --CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC------------TTTTTTCTT
T ss_pred             --CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC------------HHHHhCCCC
Confidence              77777777664 57788888888888888877664 778888888888888765331            125667777


Q ss_pred             CceeecC
Q 037045          418 LEELIIE  424 (424)
Q Consensus       418 L~~L~l~  424 (424)
                      |++|+|+
T Consensus       181 L~~L~l~  187 (251)
T 3m19_A          181 LQTITLF  187 (251)
T ss_dssp             CCEEECC
T ss_pred             CCEEEee
Confidence            7777764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.61  E-value=1e-14  Score=132.00  Aligned_cols=148  Identities=24%  Similarity=0.341  Sum_probs=100.3

Q ss_pred             cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l  339 (424)
                      ++|+.|++++|.++.++.  +..+++|+.|++++|.++.++...+..+++|++|++++|.+..+| ..+..+++|++|++
T Consensus        61 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  140 (270)
T 2o6q_A           61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL  140 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEEC
Confidence            667777777777776543  256777777777777777776665666777777777777775554 34567777777777


Q ss_pred             cccccccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcccc
Q 037045          340 RSSCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRL  417 (424)
Q Consensus       340 ~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~  417 (424)
                        +.+.+..+|.. ++.+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+.            ....+..+++
T Consensus       141 --s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~  206 (270)
T 2o6q_A          141 --GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV------------PEGAFDSLEK  206 (270)
T ss_dssp             --CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC------------CTTTTTTCTT
T ss_pred             --CCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC------------CHHHhccccC
Confidence              66666666653 56677777777777777766654 66777777777777765422            1124567777


Q ss_pred             CceeecC
Q 037045          418 LEELIIE  424 (424)
Q Consensus       418 L~~L~l~  424 (424)
                      |++|+|+
T Consensus       207 L~~L~l~  213 (270)
T 2o6q_A          207 LKMLQLQ  213 (270)
T ss_dssp             CCEEECC
T ss_pred             CCEEEec
Confidence            8887764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.60  E-value=1.3e-14  Score=131.47  Aligned_cols=148  Identities=28%  Similarity=0.395  Sum_probs=128.2

Q ss_pred             cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l  339 (424)
                      ++++.|++++|.+..++.  +..+++|+.|++++|.++.++...+..+++|++|++++|.+..+|. .+..+++|++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            679999999999998764  6889999999999999999998877889999999999999977764 5789999999999


Q ss_pred             cccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcccc
Q 037045          340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRL  417 (424)
Q Consensus       340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~  417 (424)
                        ..+.+..+|. .++.+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+.            ....+..+++
T Consensus       117 --~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------~~~~~~~l~~  182 (270)
T 2o6q_A          117 --DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV------------PEGAFDKLTE  182 (270)
T ss_dssp             --CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC------------CTTTTTTCTT
T ss_pred             --CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe------------ChhHhccCCC
Confidence              8888887765 578999999999999999988876 78999999999999976543            1224778899


Q ss_pred             CceeecC
Q 037045          418 LEELIIE  424 (424)
Q Consensus       418 L~~L~l~  424 (424)
                      |++|+|+
T Consensus       183 L~~L~L~  189 (270)
T 2o6q_A          183 LKTLKLD  189 (270)
T ss_dssp             CCEEECC
T ss_pred             cCEEECC
Confidence            9999874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.59  E-value=1.7e-14  Score=127.29  Aligned_cols=132  Identities=25%  Similarity=0.408  Sum_probs=109.9

Q ss_pred             ccceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceee
Q 037045          262 DAHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALF  338 (424)
Q Consensus       262 ~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~  338 (424)
                      .++++.|++++|.++.++  .+..+++|+.|++++|.++.++...+..+++|++|++++|.+..+|+. +..+++|++|+
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            378899999999888853  357888899999999999888877678888999999999988777654 67889999999


Q ss_pred             ecccccccccCChhhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCC
Q 037045          339 LRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGN  395 (424)
Q Consensus       339 l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~  395 (424)
                      +  +++.+..+|..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|++.+.
T Consensus       119 L--s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          119 M--CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             C--CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             c--cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            9  8888888888888889999999999988888765 78888999999999876543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.59  E-value=1.2e-14  Score=128.18  Aligned_cols=144  Identities=23%  Similarity=0.277  Sum_probs=122.8

Q ss_pred             eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeeeccccc
Q 037045          266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRSSCS  344 (424)
Q Consensus       266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l~~~~~  344 (424)
                      +.++.+++.+..+|... .++|+.|++++|.++++++..+..+++|++|++++|.+..+|. .+..+++|++|++  +++
T Consensus        22 ~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L--s~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL--GTN   98 (229)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC--CSS
T ss_pred             CEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC--CCC
Confidence            56888999998877532 3889999999999999877778899999999999999988875 4689999999999  888


Q ss_pred             ccccCChh-hhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeec
Q 037045          345 LLLQLPAE-IGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELII  423 (424)
Q Consensus       345 ~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  423 (424)
                      .+..+|.. +..+++|+.|++++|.++.+|..+..+++|++|++++|.+.+.            ....+..+++|++|++
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI------------PHGAFDRLSSLTHAYL  166 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCC------------CTTTTTTCTTCCEEEC
T ss_pred             cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCcc------------CHHHHhCCCCCCEEEe
Confidence            89888764 6889999999999999999999999999999999999986532            1135778888888887


Q ss_pred             C
Q 037045          424 E  424 (424)
Q Consensus       424 ~  424 (424)
                      +
T Consensus       167 ~  167 (229)
T 3e6j_A          167 F  167 (229)
T ss_dssp             T
T ss_pred             e
Confidence            4

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.58  E-value=1.9e-14  Score=130.45  Aligned_cols=146  Identities=22%  Similarity=0.322  Sum_probs=127.2

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeeecc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRS  341 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l~~  341 (424)
                      ++++.|++.++.+..++.+..+++|+.|++++|.+++++.  +..+++|++|++++|.+..+|+ .++.+++|++|++  
T Consensus        41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--  116 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL--  116 (272)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC--
T ss_pred             cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC--
Confidence            7899999999999999989999999999999999998753  7889999999999999977765 4789999999999  


Q ss_pred             cccccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCc
Q 037045          342 SCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLE  419 (424)
Q Consensus       342 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  419 (424)
                      ..+.+..+|.. ++.+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+..            ...++.+++|+
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------~~~~~~l~~L~  184 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP------------EGVFDKLTQLK  184 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------------TTTTTTCTTCC
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC------------HHHhcCCccCC
Confidence            88888888764 78999999999999999988766 689999999999999865431            22468889999


Q ss_pred             eeecC
Q 037045          420 ELIIE  424 (424)
Q Consensus       420 ~L~l~  424 (424)
                      +|+++
T Consensus       185 ~L~L~  189 (272)
T 3rfs_A          185 DLRLY  189 (272)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.58  E-value=2.1e-14  Score=132.58  Aligned_cols=141  Identities=19%  Similarity=0.270  Sum_probs=77.9

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++|+.|++++|.++.++.+..+++|+.|++++|.++.++.  +..+++|+.|++++|.+..+++ ++.+++|++|++  +
T Consensus        85 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l--~  159 (308)
T 1h6u_A           85 TKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSI--G  159 (308)
T ss_dssp             CSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEEC--C
T ss_pred             CCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEc--c
Confidence            4555555555555555544555555555555555555443  4455555555555555544433 555555555555  4


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      .+.+..++. +..+++|+.|++++|.++.+|. +..+++|++|++++|.+.              .+..+..+++|++|+
T Consensus       160 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~--------------~~~~l~~l~~L~~L~  223 (308)
T 1h6u_A          160 NAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQIS--------------DVSPLANTSNLFIVT  223 (308)
T ss_dssp             SSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCC--------------BCGGGTTCTTCCEEE
T ss_pred             CCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccC--------------ccccccCCCCCCEEE
Confidence            455555544 5555555555555555555543 555555555555555432              233477788888877


Q ss_pred             cC
Q 037045          423 IE  424 (424)
Q Consensus       423 l~  424 (424)
                      ++
T Consensus       224 l~  225 (308)
T 1h6u_A          224 LT  225 (308)
T ss_dssp             EE
T ss_pred             cc
Confidence            63

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.57  E-value=2.1e-14  Score=131.47  Aligned_cols=141  Identities=20%  Similarity=0.323  Sum_probs=101.1

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++|+.|++++|.++.++.+..+++|+.|++++|.++.++.  +..+++|++|++++|.+..+ +.+..+++|++|++  +
T Consensus        68 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l--~  142 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYL--G  142 (291)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEEC--C
T ss_pred             CCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEc--c
Confidence            6777777777777776556777777777777777777554  66677777777777777655 34677777777777  6


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      ++.+..+ ..+..+++|+.|++++|.++.++. +..+++|++|++++|.+.              .+..+..+++|+.|+
T Consensus       143 ~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~--------------~l~~l~~l~~L~~L~  206 (291)
T 1h6t_A          143 NNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS--------------DLRALAGLKNLDVLE  206 (291)
T ss_dssp             SSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC--------------BCGGGTTCTTCSEEE
T ss_pred             CCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC--------------CChhhccCCCCCEEE
Confidence            6666666 456777777777777777776654 777777777777777542              345678888888887


Q ss_pred             cC
Q 037045          423 IE  424 (424)
Q Consensus       423 l~  424 (424)
                      ++
T Consensus       207 l~  208 (291)
T 1h6t_A          207 LF  208 (291)
T ss_dssp             EE
T ss_pred             Cc
Confidence            63

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.57  E-value=1.9e-14  Score=129.66  Aligned_cols=140  Identities=19%  Similarity=0.230  Sum_probs=117.3

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++++.|++++|.++.++.+..+++|+.|++++|.++++++  +..+++|++|++++|.+..+|....  ++|++|++  +
T Consensus        41 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L--~  114 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFL--D  114 (263)
T ss_dssp             TTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEEC--C
T ss_pred             CcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEc--c
Confidence            7889999999999988888889999999999999998887  7788999999999999877765333  88999999  7


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      ++.+..++ .+..+++|+.|++++|.++.+| .+..+++|++|++++|.+.+              +..+..+++|++|+
T Consensus       115 ~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~--------------~~~l~~l~~L~~L~  178 (263)
T 1xeu_A          115 NNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN--------------TGGLTRLKKVNWID  178 (263)
T ss_dssp             SSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB--------------CTTSTTCCCCCEEE
T ss_pred             CCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc--------------hHHhccCCCCCEEe
Confidence            88888876 5888899999999999988886 68889999999999987542              25677788888887


Q ss_pred             cC
Q 037045          423 IE  424 (424)
Q Consensus       423 l~  424 (424)
                      ++
T Consensus       179 l~  180 (263)
T 1xeu_A          179 LT  180 (263)
T ss_dssp             EE
T ss_pred             CC
Confidence            63

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.57  E-value=2.8e-14  Score=131.73  Aligned_cols=141  Identities=22%  Similarity=0.331  Sum_probs=94.6

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++|+.|++++|.+..++.+..+++|+.|++++|.++.++.  +..+++|++|++++|.+..++. +..+++|++|++  +
T Consensus        63 ~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l--~  137 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYL--D  137 (308)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEEC--C
T ss_pred             CCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEEC--C
Confidence            5667777777766665556666667777777777666543  5566677777777776655543 666677777777  6


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      ++.+..++. ++.+++|+.|++++|.++.+|. +..+++|+.|++++|.+              ..+..+..+++|++|+
T Consensus       138 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l--------------~~~~~l~~l~~L~~L~  201 (308)
T 1h6u_A          138 LNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI--------------SDISPLASLPNLIEVH  201 (308)
T ss_dssp             SSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC--------------CCCGGGGGCTTCCEEE
T ss_pred             CCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc--------------CcChhhcCCCCCCEEE
Confidence            666666654 6666777777777777666654 66677777777777654              2334478888999888


Q ss_pred             cC
Q 037045          423 IE  424 (424)
Q Consensus       423 l~  424 (424)
                      ++
T Consensus       202 L~  203 (308)
T 1h6u_A          202 LK  203 (308)
T ss_dssp             CT
T ss_pred             cc
Confidence            75

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.56  E-value=2.3e-14  Score=125.54  Aligned_cols=130  Identities=18%  Similarity=0.253  Sum_probs=103.3

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l  339 (424)
                      ++++.|++++|.++.++  .+..+++|+.|++++|.++.+.+..+..+++|++|++++|.+..+|+. +..+++|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            67888888888888754  357788888888888888877666678888888888888888777754 577888888888


Q ss_pred             cccccccccC-ChhhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCC
Q 037045          340 RSSCSLLLQL-PAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVG  394 (424)
Q Consensus       340 ~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~  394 (424)
                        +++.+..+ |..+..+++|+.|++++|.++.+|.. +..+++|+++++++|++..
T Consensus       112 --~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          112 --NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             --CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             --CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence              77777766 45677888888888888888877665 7788888888888887643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.56  E-value=2.5e-14  Score=125.31  Aligned_cols=131  Identities=13%  Similarity=0.158  Sum_probs=95.4

Q ss_pred             cceeEEEeeccCCCCCC-C--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceee
Q 037045          263 AHTKRLSLFGFPSSTLP-D--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALF  338 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~-~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~  338 (424)
                      +.++.|++++|.++.++ .  +..+++|+.|++++|.++.+++..+..+++|++|++++|.+..+|+ .+..+++|++|+
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            56677888888777752 2  4677778888888888887776657777788888888887766654 477778888888


Q ss_pred             ecccccccccC-ChhhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCC
Q 037045          339 LRSSCSLLLQL-PAEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGN  395 (424)
Q Consensus       339 l~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~  395 (424)
                      +  +++.+..+ |..+..+++|+.|++++|.++.+ |..+..+++|++|++++|++.+.
T Consensus       112 L--s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          112 L--RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             C--TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             C--CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            8  66777665 45677777888888888877766 44577778888888888776543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.56  E-value=4e-14  Score=129.58  Aligned_cols=141  Identities=17%  Similarity=0.245  Sum_probs=126.1

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++++.|++++|.+..++.+..+++|+.|++++|.++++++  +..+++|++|++++|.+..+|. +..+++|++|++  +
T Consensus        46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L--~  120 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL--E  120 (291)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC--T
T ss_pred             CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC--C
Confidence            7899999999999999889999999999999999999887  7889999999999999977654 999999999999  8


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      ++.+..++ .+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+.+              +..+..+++|++|+
T Consensus       121 ~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~--------------~~~l~~l~~L~~L~  184 (291)
T 1h6t_A          121 HNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD--------------IVPLAGLTKLQNLY  184 (291)
T ss_dssp             TSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC--------------CGGGTTCTTCCEEE
T ss_pred             CCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc--------------chhhcCCCccCEEE
Confidence            88888874 688999999999999999988 468999999999999997542              33488899999998


Q ss_pred             cC
Q 037045          423 IE  424 (424)
Q Consensus       423 l~  424 (424)
                      ++
T Consensus       185 L~  186 (291)
T 1h6t_A          185 LS  186 (291)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.56  E-value=2.7e-14  Score=130.35  Aligned_cols=148  Identities=24%  Similarity=0.316  Sum_probs=90.2

Q ss_pred             cceeEEEeeccC-CCCC-C-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceee
Q 037045          263 AHTKRLSLFGFP-SSTL-P-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALF  338 (424)
Q Consensus       263 ~~l~~L~l~~~~-~~~~-~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~  338 (424)
                      ++|+.|++++|. +..+ + .+..+++|+.|++++|.++..++..+..+++|++|++++|.+..+|. .+..+++|++|+
T Consensus        80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  159 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF  159 (285)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence            556666666665 5553 2 23556666666666666666555545566666666666666655543 356666666666


Q ss_pred             ecccccccccCCh-hhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccc
Q 037045          339 LRSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLR  416 (424)
Q Consensus       339 l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~  416 (424)
                      +  +++.+..+|. .+..+++|+.|++++|.++.+ |..+.++++|+.|++++|.+.+            .....+..++
T Consensus       160 l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~  225 (285)
T 1ozn_A          160 L--HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA------------LPTEALAPLR  225 (285)
T ss_dssp             C--CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC------------CCHHHHTTCT
T ss_pred             C--CCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc------------CCHHHcccCc
Confidence            6  5555655554 355666666666666666544 4446666666666666665432            1224578888


Q ss_pred             cCceeecC
Q 037045          417 LLEELIIE  424 (424)
Q Consensus       417 ~L~~L~l~  424 (424)
                      +|++|+|+
T Consensus       226 ~L~~L~l~  233 (285)
T 1ozn_A          226 ALQYLRLN  233 (285)
T ss_dssp             TCCEEECC
T ss_pred             ccCEEecc
Confidence            88888874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.56  E-value=3.3e-14  Score=129.75  Aligned_cols=148  Identities=19%  Similarity=0.195  Sum_probs=89.7

Q ss_pred             cceeEEEeeccCCCCC-C-CCcCcccccEEEccCCC-CCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceee
Q 037045          263 AHTKRLSLFGFPSSTL-P-DMPNCCEILTLILEGKR-LEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALF  338 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~  338 (424)
                      ++|+.|++++|.+..+ + .+..+++|+.|++++|. ++.+++..+..+++|++|++++|.+..+ |..+..+++|++|+
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  135 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY  135 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence            5666666666666653 2 34566666666666665 6665544456666666666666666444 34456666666666


Q ss_pred             ecccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccc
Q 037045          339 LRSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLR  416 (424)
Q Consensus       339 l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~  416 (424)
                      +  +.+.+..+|. .++.+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+.            ....++.++
T Consensus       136 l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~l~  201 (285)
T 1ozn_A          136 L--QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV------------HPHAFRDLG  201 (285)
T ss_dssp             C--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE------------CTTTTTTCT
T ss_pred             C--CCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc------------CHhHccCcc
Confidence            6  5566665554 356666666666666666666554 66666666666666654332            123455566


Q ss_pred             cCceeecC
Q 037045          417 LLEELIIE  424 (424)
Q Consensus       417 ~L~~L~l~  424 (424)
                      +|++|+++
T Consensus       202 ~L~~L~l~  209 (285)
T 1ozn_A          202 RLMTLYLF  209 (285)
T ss_dssp             TCCEEECC
T ss_pred             cccEeeCC
Confidence            66666653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.55  E-value=4.6e-14  Score=122.47  Aligned_cols=133  Identities=24%  Similarity=0.412  Sum_probs=117.3

Q ss_pred             cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l  339 (424)
                      ++++.|++++|.++.++.  +..+++|+.|++++|.++.++...+..+++|++|++++|.+..+|+. +..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            689999999999998664  47899999999999999999888778899999999999999777654 789999999999


Q ss_pred             cccccccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcc
Q 037045          340 RSSCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHT  397 (424)
Q Consensus       340 ~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~  397 (424)
                        +++.+..+|.. +..+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+..+
T Consensus       108 --~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          108 --NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             --CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             --CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence              88888888765 78899999999999999988776 7899999999999998766544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.55  E-value=5.5e-14  Score=125.78  Aligned_cols=147  Identities=23%  Similarity=0.286  Sum_probs=124.9

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeecc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRS  341 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~  341 (424)
                      +..+.++++++.++.+|.... ++++.|++++|.++.+++..+..+++|++|++++|.+..++ ..+..+++|++|++  
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL--   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC--
T ss_pred             CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC--
Confidence            356789999999999875422 68999999999999988877889999999999999996665 55899999999999  


Q ss_pred             cccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCc
Q 037045          342 SCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLE  419 (424)
Q Consensus       342 ~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  419 (424)
                      +++.+..+|. .+..+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+..            ...++.+++|+
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------------~~~~~~l~~L~  158 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP------------AGAFDKLTNLQ  158 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------------TTTTTTCTTCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC------------HHHcCcCcCCC
Confidence            8888888875 578999999999999999988876 689999999999999865331            12578889999


Q ss_pred             eeecC
Q 037045          420 ELIIE  424 (424)
Q Consensus       420 ~L~l~  424 (424)
                      +|+|+
T Consensus       159 ~L~L~  163 (251)
T 3m19_A          159 TLSLS  163 (251)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.55  E-value=3.3e-14  Score=130.03  Aligned_cols=128  Identities=23%  Similarity=0.245  Sum_probs=80.1

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeecc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRS  341 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~  341 (424)
                      ++|+.|++++|.++.++....+++|+.|++++|.++.+|.. +..+++|++|++++|.+..+| ..+..+++|++|++  
T Consensus        55 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L--  131 (290)
T 1p9a_G           55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL--  131 (290)
T ss_dssp             TTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC--
T ss_pred             CCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC--
Confidence            56666666666666655445666666666666666666554 455666666666666665554 34666666666666  


Q ss_pred             cccccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCC
Q 037045          342 SCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENV  393 (424)
Q Consensus       342 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~  393 (424)
                      +++.+..+|.. +..+++|+.|++++|+++.+|.+ +..+++|++|++++|.+.
T Consensus       132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            55666655543 45566666666666666666654 456666666666666543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.54  E-value=3.6e-14  Score=129.72  Aligned_cols=146  Identities=22%  Similarity=0.243  Sum_probs=115.2

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeec
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLR  340 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~  340 (424)
                      ++++.|++++|.+..++  .+..+++|+.|++++|.++.++..  ..+++|++|++++|.+..+|..+..+++|++|++ 
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l-  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV-  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEEC-
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCCEEEC-
Confidence            67888888888887743  357788888888888888876653  5678888888888888888888888888899988 


Q ss_pred             ccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccC
Q 037045          341 SSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLL  418 (424)
Q Consensus       341 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L  418 (424)
                       +++.+..+|. .+..+++|+.|++++|.++.+|.+ +..+++|+.|++++|.+.+.            ....+..+++|
T Consensus       108 -~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l------------~~~~~~~l~~L  174 (290)
T 1p9a_G          108 -SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL------------PAGLLNGLENL  174 (290)
T ss_dssp             -CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC------------CTTTTTTCTTC
T ss_pred             -CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc------------CHHHhcCcCCC
Confidence             7888887764 578888899999988888887766 67888899999988876432            11245778899


Q ss_pred             ceeecC
Q 037045          419 EELIIE  424 (424)
Q Consensus       419 ~~L~l~  424 (424)
                      ++|+|+
T Consensus       175 ~~L~L~  180 (290)
T 1p9a_G          175 DTLLLQ  180 (290)
T ss_dssp             CEEECC
T ss_pred             CEEECC
Confidence            998874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.53  E-value=2.8e-14  Score=132.06  Aligned_cols=160  Identities=19%  Similarity=0.268  Sum_probs=108.8

Q ss_pred             cceeEEEeeccCCCC---CC-CCcCcccccEEEccC-CCCCCCChHHhcccCCCcEEEccCCCC-CcCChhhhcccccce
Q 037045          263 AHTKRLSLFGFPSST---LP-DMPNCCEILTLILEG-KRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNA  336 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~---~~-~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~  336 (424)
                      .+++.|+++++.+..   +| .+..+++|+.|++++ |.+.+..+..+..+++|++|++++|.+ +.+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467788888877764   33 457777788888874 777643333367777888888888877 367777777888888


Q ss_pred             eeecccccccc-cCChhhhccCCCCEEEecCCcCc-ccchhhhcCC-CCCEeeeccccCCCCcccCCCC---------CC
Q 037045          337 LFLRSSCSLLL-QLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLI-ELKYLRVSRVENVGNHTHADAG---------SG  404 (424)
Q Consensus       337 l~l~~~~~~~~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~~l~l~~n~~~~~~~~~~~~---------~~  404 (424)
                      |++  +.+.+. .+|..++.+++|+.|++++|.++ .+|..+..++ +|++|++++|.+.+..|.....         ..
T Consensus       130 L~L--s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N  207 (313)
T 1ogq_A          130 LDF--SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN  207 (313)
T ss_dssp             EEC--CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSS
T ss_pred             EeC--CCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCC
Confidence            888  566655 67777777788888888888776 6777777776 7788888777765544431100         00


Q ss_pred             --CCcChhhhhccccCceeecC
Q 037045          405 --EMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       405 --~~~~~~~l~~l~~L~~L~l~  424 (424)
                        .......++++++|++|+++
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~  229 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECC
T ss_pred             cccCcCCHHHhcCCCCCEEECC
Confidence              11234456778888888764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.53  E-value=1.3e-14  Score=136.71  Aligned_cols=130  Identities=21%  Similarity=0.276  Sum_probs=81.1

Q ss_pred             cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l  339 (424)
                      ++++.|++++|.++.++.  +..+++|+.|++++|.+++.++..+..+++|++|++++|.+..+|.. ++.+++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            466666666666666433  46666666666666666665554456666666666666666666544 566666666666


Q ss_pred             cccccccccCCh--hhhccCCCCEEEecCCc-Ccccc-hhhhcCCCCCEeeeccccCCC
Q 037045          340 RSSCSLLLQLPA--EIGRLQKLEILDVSHTK-VQCLP-SEIGQLIELKYLRVSRVENVG  394 (424)
Q Consensus       340 ~~~~~~~~~lp~--~~~~l~~L~~L~l~~~~-i~~lp-~~i~~l~~L~~l~l~~n~~~~  394 (424)
                        +++.+..+|.  .+..+++|+.|++++|. +..++ ..+..+++|++|++++|.+.+
T Consensus       132 --~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          132 --LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             --TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             --CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence              5666666655  45666666666666663 55443 336666666666666665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.53  E-value=3.8e-14  Score=128.72  Aligned_cols=130  Identities=27%  Similarity=0.294  Sum_probs=99.8

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l  339 (424)
                      ++++.|++++|.++.++  .+..+++|+.|++++|.++.++...+..+++|++|++++|.+..++ ..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            56788888888887754  4577888888888888888777666777888888888888885554 56778888888888


Q ss_pred             cccccccccCCh-hhhccCCCCEEEecCCcCcc--cchhhhcCCCCCEeeeccccCCC
Q 037045          340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQC--LPSEIGQLIELKYLRVSRVENVG  394 (424)
Q Consensus       340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~l~l~~n~~~~  394 (424)
                        ..+.+..++. .++.+++|+.|++++|.++.  +|..+.++++|++|++++|.+.+
T Consensus       108 --~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A          108 --VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             --TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             --CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence              6777776655 57778888888888888765  67778888888888888887654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.52  E-value=4.8e-14  Score=123.50  Aligned_cols=144  Identities=22%  Similarity=0.299  Sum_probs=121.7

Q ss_pred             eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeeeccccc
Q 037045          266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFLRSSCS  344 (424)
Q Consensus       266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l~~~~~  344 (424)
                      +.++++++.++.+|... .++|+.|++++|.++.+++..+..+++|++|++++|.+..+ |..+..+++|++|++  +++
T Consensus        14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L--s~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL--YGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC--CSS
T ss_pred             CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC--CCC
Confidence            46888889998887532 26899999999999998887788899999999999999665 678999999999999  889


Q ss_pred             ccccCChh-hhccCCCCEEEecCCcCcccch-hhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          345 LLLQLPAE-IGRLQKLEILDVSHTKVQCLPS-EIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       345 ~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      .+..+|.. +..+++|+.|++++|.++.++. .+..+++|++|++++|.+.+..            ...+..+++|++|+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~~L~  158 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA------------KGTFSPLRAIQTMH  158 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC------------TTTTTTCTTCCEEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC------------HHHHhCCCCCCEEE
Confidence            99999875 5789999999999999997754 5899999999999999875432            22467788888888


Q ss_pred             cC
Q 037045          423 IE  424 (424)
Q Consensus       423 l~  424 (424)
                      |+
T Consensus       159 L~  160 (220)
T 2v9t_B          159 LA  160 (220)
T ss_dssp             CC
T ss_pred             eC
Confidence            74

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.52  E-value=3.5e-14  Score=122.11  Aligned_cols=127  Identities=17%  Similarity=0.191  Sum_probs=111.5

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCC-cCChhhhcccccceeeecc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIG-CLPPSISRLINLNALFLRS  341 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~l~l~~  341 (424)
                      ++|+.|++++|.+..++.+..+++|+.|++++|.++......+..+++|++|++++|.+. ..|..++.+++|++|++  
T Consensus        66 ~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L--  143 (197)
T 4ezg_A           66 HNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL--  143 (197)
T ss_dssp             TTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC--
T ss_pred             CCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc--
Confidence            789999999999888888899999999999999999743333788999999999999995 46788999999999999  


Q ss_pred             cccc-cccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045          342 SCSL-LLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV  393 (424)
Q Consensus       342 ~~~~-~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~  393 (424)
                      +++. +..+| .+..+++|+.|++++|.++.+| .+..+++|++|++++|.+.
T Consensus       144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          144 SYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred             cCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence            6676 88887 6899999999999999999987 7899999999999999753

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.52  E-value=8.1e-14  Score=139.85  Aligned_cols=141  Identities=20%  Similarity=0.325  Sum_probs=88.7

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++|+.|++++|.+..++.+..+++|+.|++++|.++.++.  +..+++|+.|++++|.+..+ +.+..+++|+.|++  +
T Consensus        65 ~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~L--s  139 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYL--G  139 (605)
T ss_dssp             TTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTT--STTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEEC--C
T ss_pred             CCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChh--hccCCCCCEEEecCCCCCCC-ccccCCCccCEEEC--C
Confidence            5666666666666665556666666666666666666552  55666666666666666554 33666666666666  5


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      ++.+..+ ..+..+++|+.|++++|.+..+++ +..+++|+.|++++|.+.              .++.++.|++|+.|+
T Consensus       140 ~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~--------------~l~~l~~l~~L~~L~  203 (605)
T 1m9s_A          140 NNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS--------------DLRALAGLKNLDVLE  203 (605)
T ss_dssp             SSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC--------------BCGGGTTCTTCSEEE
T ss_pred             CCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC--------------CChHHccCCCCCEEE
Confidence            5666655 446666666666666666665544 666666666666666432              234566667777766


Q ss_pred             cC
Q 037045          423 IE  424 (424)
Q Consensus       423 l~  424 (424)
                      |+
T Consensus       204 L~  205 (605)
T 1m9s_A          204 LF  205 (605)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.52  E-value=1.8e-13  Score=118.67  Aligned_cols=144  Identities=24%  Similarity=0.361  Sum_probs=120.1

Q ss_pred             eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeeeccccc
Q 037045          266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFLRSSCS  344 (424)
Q Consensus       266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l~~~~~  344 (424)
                      +.++..++.+..+|.. -.++|+.|++++|.++.++...+..+++|++|++++|.+..+|.. +..+++|++|++  +++
T Consensus        10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L--s~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL--STN   86 (208)
T ss_dssp             TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC--CSS
T ss_pred             CEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC--CCC
Confidence            4677788888877643 356899999999999999888788899999999999999877754 689999999999  888


Q ss_pred             ccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          345 LLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       345 ~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      .+..+|.. ++.+++|+.|++++|.++.+|.. +..+++|++|++++|.+.+..+            ..+..+++|++|+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------------~~~~~l~~L~~L~  154 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD------------GVFDRLTSLQYIW  154 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------------TTTTTCTTCCEEE
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH------------HHhccCCCccEEE
Confidence            88888764 68999999999999999988776 7899999999999997654311            2367788888887


Q ss_pred             cC
Q 037045          423 IE  424 (424)
Q Consensus       423 l~  424 (424)
                      ++
T Consensus       155 l~  156 (208)
T 2o6s_A          155 LH  156 (208)
T ss_dssp             CC
T ss_pred             ec
Confidence            64

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.52  E-value=2.4e-14  Score=132.47  Aligned_cols=146  Identities=15%  Similarity=0.177  Sum_probs=69.7

Q ss_pred             cceeEEEeeccCCCC-CC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcCChhhhccc-ccceee
Q 037045          263 AHTKRLSLFGFPSST-LP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLI-NLNALF  338 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~-~L~~l~  338 (424)
                      ++|++|++++|.+.. +| .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+ +.+|..++.+. +|++|+
T Consensus       101 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~  180 (313)
T 1ogq_A          101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT  180 (313)
T ss_dssp             TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred             CCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence            344444444444442 22 234444444444444444422222244444444444444444 24444444444 444444


Q ss_pred             ecccccccc-cCChhhhccCCCCEEEecCCcCc-ccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccc
Q 037045          339 LRSSCSLLL-QLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLR  416 (424)
Q Consensus       339 l~~~~~~~~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~  416 (424)
                      +  +.+.+. .+|..++.+. |+.|++++|.++ ..|..+..+++|++|++++|.+.+             .+..+..++
T Consensus       181 L--~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~l~  244 (313)
T 1ogq_A          181 I--SRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF-------------DLGKVGLSK  244 (313)
T ss_dssp             C--CSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC-------------BGGGCCCCT
T ss_pred             C--cCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee-------------ecCcccccC
Confidence            4  333332 3444444443 445555544444 233334455555555555554332             344577889


Q ss_pred             cCceeecC
Q 037045          417 LLEELIIE  424 (424)
Q Consensus       417 ~L~~L~l~  424 (424)
                      +|++|+++
T Consensus       245 ~L~~L~Ls  252 (313)
T 1ogq_A          245 NLNGLDLR  252 (313)
T ss_dssp             TCCEEECC
T ss_pred             CCCEEECc
Confidence            99999885

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.52  E-value=4.6e-14  Score=123.60  Aligned_cols=144  Identities=14%  Similarity=0.192  Sum_probs=119.6

Q ss_pred             eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCC-ChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeeecccc
Q 037045          266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKL-PTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRSSC  343 (424)
Q Consensus       266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l~~~~  343 (424)
                      +.++++++.++.+|.. -...++.|++++|.++.+ +...+..+++|++|++++|.+..+++ .+..+++|++|++  ++
T Consensus        14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L--s~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL--TS   90 (220)
T ss_dssp             TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC--CS
T ss_pred             CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC--CC
Confidence            4789999999987753 234678999999999987 44557889999999999999977664 7999999999999  88


Q ss_pred             cccccCCh-hhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCcee
Q 037045          344 SLLLQLPA-EIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEEL  421 (424)
Q Consensus       344 ~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  421 (424)
                      +.+..+|. .+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+.+..|            ..+..+++|++|
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~l~~L~~L  158 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP------------GAFDTLHSLSTL  158 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT------------TTTTTCTTCCEE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH------------HHhcCCCCCCEE
Confidence            88888776 488999999999999999977 5558999999999999998765422            467788899998


Q ss_pred             ecC
Q 037045          422 IIE  424 (424)
Q Consensus       422 ~l~  424 (424)
                      +|+
T Consensus       159 ~L~  161 (220)
T 2v70_A          159 NLL  161 (220)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.52  E-value=5.2e-14  Score=117.75  Aligned_cols=127  Identities=25%  Similarity=0.234  Sum_probs=113.3

Q ss_pred             cceeEEEeeccCCC--CCCCC-cCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCc-CChhhhcccccceee
Q 037045          263 AHTKRLSLFGFPSS--TLPDM-PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGC-LPPSISRLINLNALF  338 (424)
Q Consensus       263 ~~l~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~p~~~~~l~~L~~l~  338 (424)
                      ++++.|++++|.+.  .+|.. ..+++|+.|++++|.++..  ..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            78999999999998  57655 8899999999999999988  337889999999999999966 777778899999999


Q ss_pred             ecccccccccCC--hhhhccCCCCEEEecCCcCcccch----hhhcCCCCCEeeeccccCC
Q 037045          339 LRSSCSLLLQLP--AEIGRLQKLEILDVSHTKVQCLPS----EIGQLIELKYLRVSRVENV  393 (424)
Q Consensus       339 l~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~l~l~~n~~~  393 (424)
                      +  +++.+..+|  ..+..+++|+.|++++|.++.+|.    .+..+++|++|++++|.+.
T Consensus       102 L--s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 L--SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             C--BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             c--cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            9  888998876  688999999999999999998887    6899999999999999754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.51  E-value=9.2e-14  Score=144.33  Aligned_cols=77  Identities=21%  Similarity=0.275  Sum_probs=46.9

Q ss_pred             cceeEEEeeccCCCC-CC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcCChhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSST-LP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~l~l  339 (424)
                      ++|+.|++++|.+.. +| .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+ +.+|..++.+++|++|++
T Consensus       466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  545 (768)
T 3rgz_A          466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL  545 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred             CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence            556666666666664 33 235666666666666666643333355666666666666666 456666666666666666

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=5.4e-14  Score=118.66  Aligned_cols=127  Identities=17%  Similarity=0.256  Sum_probs=112.1

Q ss_pred             ccceeEEEeeccCCCCCCCCcCcc-cccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhh-hcccccceeee
Q 037045          262 DAHTKRLSLFGFPSSTLPDMPNCC-EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSI-SRLINLNALFL  339 (424)
Q Consensus       262 ~~~l~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~-~~l~~L~~l~l  339 (424)
                      ..+++.|++++|.++.++.+..+. +|+.|++++|.+++++  .+..+++|++|++++|.+..+|+.+ ..+++|++|++
T Consensus        18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            378999999999999988776666 9999999999999873  2788999999999999998887654 89999999999


Q ss_pred             cccccccccCCh--hhhccCCCCEEEecCCcCcccchh----hhcCCCCCEeeeccccC
Q 037045          340 RSSCSLLLQLPA--EIGRLQKLEILDVSHTKVQCLPSE----IGQLIELKYLRVSRVEN  392 (424)
Q Consensus       340 ~~~~~~~~~lp~--~~~~l~~L~~L~l~~~~i~~lp~~----i~~l~~L~~l~l~~n~~  392 (424)
                        +++.+..+|.  .++.+++|+.|++++|+++.+|..    +..+++|++|+++.|..
T Consensus        96 --~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           96 --TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             --CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             --CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence              8889998887  788999999999999999988875    88999999999999864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.50  E-value=5.7e-14  Score=129.54  Aligned_cols=148  Identities=20%  Similarity=0.226  Sum_probs=99.7

Q ss_pred             cceeEEEeeccCCCCCCC---CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCc--CChhhhccccccee
Q 037045          263 AHTKRLSLFGFPSSTLPD---MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGC--LPPSISRLINLNAL  337 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~p~~~~~l~~L~~l  337 (424)
                      ++|+.|++++|.+...+.   +..+++|+.|++++|.++..++..+..+++|++|++++|.+..  +|..+..+++|++|
T Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  180 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  180 (306)
T ss_dssp             TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence            667777777777766442   4667777777777777776655556667777777777777633  56667777777777


Q ss_pred             eecccccccccC-ChhhhccCCCCEEEecCCcCcccch-hhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcc
Q 037045          338 FLRSSCSLLLQL-PAEIGRLQKLEILDVSHTKVQCLPS-EIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKL  415 (424)
Q Consensus       338 ~l~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l  415 (424)
                      ++  +++.+..+ |..+..+++|+.|++++|.++.+|. .+..+++|++|++++|.+.+..+            ..+..+
T Consensus       181 ~L--s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~~  246 (306)
T 2z66_A          181 DL--SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK------------QELQHF  246 (306)
T ss_dssp             EC--TTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS------------SSCCCC
T ss_pred             EC--CCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH------------HHHHhh
Confidence            77  66666655 4566777777777777777776654 36677777777777776654322            245555


Q ss_pred             -ccCceeecC
Q 037045          416 -RLLEELIIE  424 (424)
Q Consensus       416 -~~L~~L~l~  424 (424)
                       ++|++|+|+
T Consensus       247 ~~~L~~L~L~  256 (306)
T 2z66_A          247 PSSLAFLNLT  256 (306)
T ss_dssp             CTTCCEEECT
T ss_pred             hccCCEEEcc
Confidence             367777764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.49  E-value=4.3e-14  Score=130.38  Aligned_cols=148  Identities=21%  Similarity=0.218  Sum_probs=122.9

Q ss_pred             cceeEEEeeccCCCCCCC-CcCcccccEEEccCCCCCCCCh-HHhcccCCCcEEEccCCCCC-cCChhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPT-SFFDYMCHLQLLDLHETNIG-CLPPSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~l~l  339 (424)
                      ++|+.|++++|.+..+|. +..+++|+.|++++|.++..+. ..+..+++|++|++++|.+. ..|..+..+++|++|++
T Consensus        78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  157 (306)
T 2z66_A           78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  157 (306)
T ss_dssp             SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred             cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence            789999999998887653 5788999999999999998765 44778899999999999984 45667889999999999


Q ss_pred             ccccccccc--CChhhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccc
Q 037045          340 RSSCSLLLQ--LPAEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLR  416 (424)
Q Consensus       340 ~~~~~~~~~--lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~  416 (424)
                        .++.+..  +|..+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+.+.            ....+..++
T Consensus       158 --~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~  223 (306)
T 2z66_A          158 --AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL------------DTFPYKCLN  223 (306)
T ss_dssp             --TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC------------CSGGGTTCT
T ss_pred             --CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc------------ChhhccCcc
Confidence              7777764  788899999999999999998876 55689999999999999986543            222578889


Q ss_pred             cCceeecC
Q 037045          417 LLEELIIE  424 (424)
Q Consensus       417 ~L~~L~l~  424 (424)
                      +|++|+|+
T Consensus       224 ~L~~L~L~  231 (306)
T 2z66_A          224 SLQVLDYS  231 (306)
T ss_dssp             TCCEEECT
T ss_pred             cCCEeECC
Confidence            99999875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.49  E-value=3.1e-13  Score=137.23  Aligned_cols=147  Identities=15%  Similarity=0.131  Sum_probs=94.5

Q ss_pred             ceeEEEeeccCCCC-CCC-Cc-------CcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcc---
Q 037045          264 HTKRLSLFGFPSST-LPD-MP-------NCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRL---  331 (424)
Q Consensus       264 ~l~~L~l~~~~~~~-~~~-~~-------~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l---  331 (424)
                      +|+.|++++|.+.. .|. +.       .+.+|+.|++++|.++.+|...+..+++|++|++++|.+..+|..+...   
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~  482 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE  482 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred             ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence            45555555555554 121 22       4556777777777777776665666777777777777776666543322   


Q ss_pred             -----cccceeeecccccccccCChhhh--ccCCCCEEEecCCcCcccchhhhcCCCCCEeeecc------ccCCCCccc
Q 037045          332 -----INLNALFLRSSCSLLLQLPAEIG--RLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR------VENVGNHTH  398 (424)
Q Consensus       332 -----~~L~~l~l~~~~~~~~~lp~~~~--~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~------n~~~~~~~~  398 (424)
                           ++|++|++  +++.+..+|..+.  .+++|+.|++++|.++.+|..+.++++|++|++++      |.+.+.   
T Consensus       483 ~~~~l~~L~~L~L--s~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~---  557 (636)
T 4eco_A          483 NFKNTYLLTSIDL--RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE---  557 (636)
T ss_dssp             ECTTGGGCCEEEC--CSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCC---
T ss_pred             cccccCCccEEEC--cCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCccccc---
Confidence                 27777777  6666667777665  77777777777777777777777777777777744      333333   


Q ss_pred             CCCCCCCCcChhhhhccccCceeecC
Q 037045          399 ADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       399 ~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                               .+..++.+++|++|+|+
T Consensus       558 ---------~p~~l~~l~~L~~L~Ls  574 (636)
T 4eco_A          558 ---------WPEGITLCPSLTQLQIG  574 (636)
T ss_dssp             ---------CCTTGGGCSSCCEEECC
T ss_pred             ---------ChHHHhcCCCCCEEECC
Confidence                     33467777888887764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.49  E-value=1.7e-13  Score=137.54  Aligned_cols=141  Identities=18%  Similarity=0.252  Sum_probs=126.4

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++|+.|++++|.+..++.+..|++|+.|++++|.++.+++  +..+++|+.|++++|.+..+| .+..+++|+.|++  +
T Consensus        43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L--s  117 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL--E  117 (605)
T ss_dssp             TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC--T
T ss_pred             CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe--c
Confidence            7899999999999999999999999999999999999887  788999999999999997776 6899999999999  8


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      .+.+..++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+.+              +..+..|++|+.|+
T Consensus       118 ~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~--------------~~~l~~l~~L~~L~  181 (605)
T 1m9s_A          118 HNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD--------------IVPLAGLTKLQNLY  181 (605)
T ss_dssp             TSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC--------------CGGGTTCTTCCEEE
T ss_pred             CCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC--------------chhhccCCCCCEEE
Confidence            88888875 588999999999999999988 468999999999999997543              23388899999998


Q ss_pred             cC
Q 037045          423 IE  424 (424)
Q Consensus       423 l~  424 (424)
                      |+
T Consensus       182 Ls  183 (605)
T 1m9s_A          182 LS  183 (605)
T ss_dssp             CC
T ss_pred             Cc
Confidence            85

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.48  E-value=1.2e-12  Score=125.97  Aligned_cols=232  Identities=14%  Similarity=0.071  Sum_probs=141.6

Q ss_pred             EEEE--EcCCCCcHHHHHHHHHHhhccC---CCCc-eEEEEEeccCCCHHHHHHHHHHHhccccc--ccChhHHHHHHHH
Q 037045            3 KICI--WGPLGVGKTTIMENLHHSIGES---RRFD-IIFWENINTDGNIRDIQEIILERLKVNAK--ELNNDLRADIISK   74 (424)
Q Consensus         3 vi~I--~G~~G~GKTtLa~~~~~~~~~~---~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~l~~   74 (424)
                      .+.|  +|++|+||||||+.+++.....   ..++ .++|+++....+...++..++.+++....  ..+..+....+.+
T Consensus        52 ~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~  131 (412)
T 1w5s_A           52 NMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVD  131 (412)
T ss_dssp             EEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHH
T ss_pred             EEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH
Confidence            5667  9999999999999999886321   1233 37888887778899999999999876532  2334455566666


Q ss_pred             Hhc--cCcEEEEEcCCCCcc--------hhhhh-ccC--CC--C--CCcEEEEEecchhhh-------c----ccCceEE
Q 037045           75 ELN--DRSYVLFLDGVSSEI--------NFKEI-GMH--DD--H--GRGKVVFACRSREFC-------W----QADGVIH  126 (424)
Q Consensus        75 ~l~--~~~~LlvlD~~~~~~--------~~~~~-~~~--~~--~--~~~~iiittr~~~~~-------~----~~~~~~~  126 (424)
                      .+.  +++++|||||++...        .+..+ ...  ..  .  .+..+|+||+.....       .    .....+.
T Consensus       132 ~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~  211 (412)
T 1w5s_A          132 NLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLH  211 (412)
T ss_dssp             HHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEE
T ss_pred             HHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeee
Confidence            664  578999999998742        22222 111  11  2  445678788754321       1    1223399


Q ss_pred             ecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcC------CchHHHHHHHHHHh-----CC---cchHHHHHHHH
Q 037045          127 VQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECG------GMPYMLKLIGKELA-----NQ---SEVAIWRATAD  192 (424)
Q Consensus       127 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~------g~Plai~~~a~~l~-----~~---~~~~~~~~~~~  192 (424)
                      +.+++.+++.++|...+..........++.+..|++.++      |+|..+..++....     ..   -+.+.+.....
T Consensus       212 l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~  291 (412)
T 1w5s_A          212 LPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS  291 (412)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence            999999999999987654221111223567788999999      99976655443211     11   11122222211


Q ss_pred             HhhhcCcccccchhhhhHHHhhhhccCCcchHhHHhhhhhcc--CCCCCChHHHHh
Q 037045          193 ELRLTSSEEKKELEEVDRFFTLVYKNLSLEQQHCLLGWAIFS--TGLELSQDYIID  246 (424)
Q Consensus       193 ~l~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~fp--~~~~i~~~~Li~  246 (424)
                      ...           . ...+...+..|++..+.++..+|.+.  .+..++...+..
T Consensus       292 ~~~-----------~-~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~  335 (412)
T 1w5s_A          292 ENE-----------A-ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQ  335 (412)
T ss_dssp             HC------------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred             HHh-----------c-cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence            111           0 23345567789988999999888754  333455544443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.48  E-value=1.4e-13  Score=134.09  Aligned_cols=128  Identities=22%  Similarity=0.286  Sum_probs=64.3

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l  339 (424)
                      ++|+.|++++|.+..++  .+..+++|+.|++++|.++.++...+..+++|++|++++|.+..+|. .+..+++|++|++
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  178 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL  178 (452)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence            45555555555555432  23455555555555555555555445555555555555555544432 3445555555555


Q ss_pred             cccccccccCCh-hhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccC
Q 037045          340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVEN  392 (424)
Q Consensus       340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~  392 (424)
                      + .++.+..++. .+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+
T Consensus       179 ~-~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          179 G-ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             C-CCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCC
T ss_pred             C-CCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcC
Confidence            2 3344444433 2444555555555555554444 244444555555555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.48  E-value=3.9e-13  Score=139.75  Aligned_cols=127  Identities=19%  Similarity=0.181  Sum_probs=89.8

Q ss_pred             cccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcc--------cccceeeecccccccccCChhhh-
Q 037045          284 CCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRL--------INLNALFLRSSCSLLLQLPAEIG-  354 (424)
Q Consensus       284 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l--------~~L~~l~l~~~~~~~~~lp~~~~-  354 (424)
                      +++|+.|++++|.++.+|...+..+++|+.|++++|.+..+|..+...        ++|+.|++  +++.+..+|..+. 
T Consensus       672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~L--s~N~L~~lp~~l~~  749 (876)
T 4ecn_A          672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL--RFNKLTSLSDDFRA  749 (876)
T ss_dssp             CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEEC--CSSCCCCCCGGGST
T ss_pred             CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEEC--CCCCCccchHHhhh
Confidence            346777777777777777776666777888888888777776654332        37888888  6677777777776 


Q ss_pred             -ccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccc------cCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045          355 -RLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRV------ENVGNHTHADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       355 -~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n------~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                       .+++|+.|++++|.++.+|..+.++++|+.|++++|      .+.+.            .+..++++++|++|+|+
T Consensus       750 ~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~------------ip~~l~~L~~L~~L~Ls  814 (876)
T 4ecn_A          750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ------------WPTGITTCPSLIQLQIG  814 (876)
T ss_dssp             TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCC------------CCTTGGGCSSCCEEECC
T ss_pred             ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccccccc------------ChHHHhcCCCCCEEECC
Confidence             778888888888887777777778888888887663      33333            33466777777777764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.48  E-value=1.5e-13  Score=124.68  Aligned_cols=160  Identities=25%  Similarity=0.305  Sum_probs=100.2

Q ss_pred             cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l  339 (424)
                      ++|+.|++++|.+..++.  +..+++|+.|++++|.++..+...+..+++|++|++++|.+..++. .++.+++|++|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  131 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred             cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence            677777777777776442  4667777777777777777665556677777777777777755543 5677777777777


Q ss_pred             ccccccccc--CChhhhccCCCCEEEecCCcCcccch-hhhcCCCCC----EeeeccccCCCCcccC---------CCCC
Q 037045          340 RSSCSLLLQ--LPAEIGRLQKLEILDVSHTKVQCLPS-EIGQLIELK----YLRVSRVENVGNHTHA---------DAGS  403 (424)
Q Consensus       340 ~~~~~~~~~--lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~----~l~l~~n~~~~~~~~~---------~~~~  403 (424)
                        +.+.+..  +|..++.+++|+.|++++|.++.+|. .+..+++|+    .+++++|.+.+..+..         +.+.
T Consensus       132 --~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~  209 (276)
T 2z62_A          132 --AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT  209 (276)
T ss_dssp             --CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCS
T ss_pred             --cCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCC
Confidence              6666654  56677777777777777777765543 355444444    5666666543221110         0000


Q ss_pred             CCCc--ChhhhhccccCceeecC
Q 037045          404 GEMI--SLNIISKLRLLEELIIE  424 (424)
Q Consensus       404 ~~~~--~~~~l~~l~~L~~L~l~  424 (424)
                      ....  ....++.+++|++|+++
T Consensus       210 n~l~~~~~~~~~~l~~L~~L~l~  232 (276)
T 2z62_A          210 NQLKSVPDGIFDRLTSLQKIWLH  232 (276)
T ss_dssp             SCCSCCCTTTTTTCCSCCEEECC
T ss_pred             CceeecCHhHhcccccccEEEcc
Confidence            1111  12235788899988874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.47  E-value=1.8e-13  Score=132.93  Aligned_cols=127  Identities=26%  Similarity=0.395  Sum_probs=67.4

Q ss_pred             cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCC-CCCcCCh-hhhcccccceee
Q 037045          263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHET-NIGCLPP-SISRLINLNALF  338 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~p~-~~~~l~~L~~l~  338 (424)
                      ++|+.|++++|.++.++.  +..+++|+.|++++|.++.++...+..+++|+.|++++| .+..++. .+..+++|++|+
T Consensus       112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~  191 (440)
T 3zyj_A          112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN  191 (440)
T ss_dssp             SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred             ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence            556666666666665442  355566666666666666555544555555555555553 2233332 355555555555


Q ss_pred             ecccccccccCChhhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccC
Q 037045          339 LRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVEN  392 (424)
Q Consensus       339 l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~  392 (424)
                      +  +.+.+..+|. +..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+
T Consensus       192 L--~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  243 (440)
T 3zyj_A          192 L--AMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI  243 (440)
T ss_dssp             C--TTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             C--CCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence            5  4555555542 44555555555555555543 33355555555555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.47  E-value=1.7e-13  Score=133.52  Aligned_cols=130  Identities=19%  Similarity=0.334  Sum_probs=115.0

Q ss_pred             cceeEEEeeccCCCCC--CCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTL--PDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l  339 (424)
                      ++++.|++++|.++.+  ..+..+++|+.|++++|.++.+++..+..+++|++|++++|.+..+|+. +..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            7899999999999985  3468999999999999999998877788999999999999999887754 888999999999


Q ss_pred             cccccccccCCh-hhhccCCCCEEEecCC-cCcccchh-hhcCCCCCEeeeccccCCC
Q 037045          340 RSSCSLLLQLPA-EIGRLQKLEILDVSHT-KVQCLPSE-IGQLIELKYLRVSRVENVG  394 (424)
Q Consensus       340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~-~i~~lp~~-i~~l~~L~~l~l~~n~~~~  394 (424)
                        +++.+..+|. .+..+++|+.|++++| .+..+|.. +..+++|++|++++|.+.+
T Consensus       155 --~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          155 --RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             --CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             --CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence              8888888876 6889999999999995 48888775 8999999999999998754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.47  E-value=2.2e-13  Score=132.19  Aligned_cols=148  Identities=23%  Similarity=0.281  Sum_probs=81.9

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l  339 (424)
                      ++|+.|++++|.+..++  .+..+++|+.|++++|.++.++...+..+++|++|++++|.+..+|. .+..+++|++|++
T Consensus        88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l  167 (440)
T 3zyj_A           88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL  167 (440)
T ss_dssp             SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence            45555555555555432  23445555555555555555555445555555555555555544432 3555555555555


Q ss_pred             cccccccccCCh-hhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccC
Q 037045          340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLL  418 (424)
Q Consensus       340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L  418 (424)
                      . .++.+..++. .+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+.+.            ....+..+++|
T Consensus       168 ~-~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~------------~~~~~~~l~~L  233 (440)
T 3zyj_A          168 G-ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAI------------RPGSFQGLMHL  233 (440)
T ss_dssp             C-CCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEE------------CTTTTTTCTTC
T ss_pred             C-CCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCcc------------ChhhhccCccC
Confidence            2 3344444443 3555666666666666666665 355666666666666654332            23466777888


Q ss_pred             ceeecC
Q 037045          419 EELIIE  424 (424)
Q Consensus       419 ~~L~l~  424 (424)
                      ++|+|+
T Consensus       234 ~~L~L~  239 (440)
T 3zyj_A          234 QKLWMI  239 (440)
T ss_dssp             CEEECT
T ss_pred             CEEECC
Confidence            888764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.47  E-value=1.1e-13  Score=113.29  Aligned_cols=122  Identities=23%  Similarity=0.236  Sum_probs=73.2

Q ss_pred             cceeEEEeeccCCC--CCCCC-cCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCc-CChhhhcccccceee
Q 037045          263 AHTKRLSLFGFPSS--TLPDM-PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGC-LPPSISRLINLNALF  338 (424)
Q Consensus       263 ~~l~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~p~~~~~l~~L~~l~  338 (424)
                      ++++.|++++|.+.  .+|.. ..+++|+.|++++|.++..  ..+..+++|++|++++|.+.. +|..++.+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            56677777777666  34433 5666677777776666665  225566666666666666644 455455566666666


Q ss_pred             ecccccccccCC--hhhhccCCCCEEEecCCcCcccch----hhhcCCCCCEeeec
Q 037045          339 LRSSCSLLLQLP--AEIGRLQKLEILDVSHTKVQCLPS----EIGQLIELKYLRVS  388 (424)
Q Consensus       339 l~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~l~l~  388 (424)
                      +  +++.+..+|  ..++.+++|+.|++++|.++.+|.    .+..+++|++|+++
T Consensus        95 l--s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 L--SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             C--TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             C--CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            6  555555543  455666666666666666655544    35556666665544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.47  E-value=1.3e-13  Score=112.76  Aligned_cols=129  Identities=22%  Similarity=0.214  Sum_probs=108.2

Q ss_pred             CcccccEEEccCCCCC--CCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccccccccc-CChhhhccCCC
Q 037045          283 NCCEILTLILEGKRLE--KLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQ-LPAEIGRLQKL  359 (424)
Q Consensus       283 ~~~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~-lp~~~~~l~~L  359 (424)
                      ..++|+.|++++|.++  .++.. +..+++|++|++++|.+..+ ..++.+++|++|++  +++.+.. +|..++.+++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L--s~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLEL--SDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEEC--CSSCCCSCTHHHHHHCTTC
T ss_pred             CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEEC--CCCcccchHHHHhhhCCCC
Confidence            4578999999999998  56653 68899999999999999776 77899999999999  8888887 78778889999


Q ss_pred             CEEEecCCcCcccc--hhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045          360 EILDVSHTKVQCLP--SEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       360 ~~L~l~~~~i~~lp--~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                      +.|++++|.++.+|  ..+..+++|++|++++|.+.+..+         .....++.+++|++|+++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---------~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND---------YRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT---------HHHHHHHHCTTCCEETTB
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH---------HHHHHHHHCCCcccccCC
Confidence            99999999999875  669999999999999997653210         011468999999999875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.47  E-value=1.9e-13  Score=138.21  Aligned_cols=131  Identities=27%  Similarity=0.265  Sum_probs=113.0

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l  339 (424)
                      ++++.|++++|.++.++  .+..+++|+.|++++|.++.+++..+..+++|++|++++|.+..+ |..++.+++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            78899999999998854  468899999999999999988776688899999999999999665 778999999999999


Q ss_pred             cccccccccCC-hhhhccCCCCEEEecCCcCc--ccchhhhcCCCCCEeeeccccCCCC
Q 037045          340 RSSCSLLLQLP-AEIGRLQKLEILDVSHTKVQ--CLPSEIGQLIELKYLRVSRVENVGN  395 (424)
Q Consensus       340 ~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~l~l~~n~~~~~  395 (424)
                        ..+.+..+| ..++.+++|++|++++|.+.  .+|..++++++|++|++++|.+.+.
T Consensus       112 --~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A          112 --VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             --TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             --cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence              788887776 57889999999999999977  5788899999999999999977553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.47  E-value=1e-13  Score=140.78  Aligned_cols=131  Identities=27%  Similarity=0.283  Sum_probs=117.7

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l  339 (424)
                      ++++.|++++|.++.+|  .+..+++|++|++++|.++.+++..|..+++|++|++++|++..+|+ .|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            68999999999999965  46899999999999999999988888999999999999999988875 5899999999999


Q ss_pred             cccccccccCCh-hhhccCCCCEEEecCCcCcc--cchhhhcCCCCCEeeeccccCCCC
Q 037045          340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQC--LPSEIGQLIELKYLRVSRVENVGN  395 (424)
Q Consensus       340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~l~l~~n~~~~~  395 (424)
                        ..+.+..+|. .++.+++|+.|++++|.++.  +|..++.+++|++|++++|.+.+.
T Consensus       132 --s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          132 --VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             --TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             --CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence              8888888876 58999999999999999874  577789999999999999987654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.47  E-value=1.6e-13  Score=131.02  Aligned_cols=130  Identities=21%  Similarity=0.245  Sum_probs=96.4

Q ss_pred             ccceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceee
Q 037045          262 DAHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALF  338 (424)
Q Consensus       262 ~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~  338 (424)
                      .++++.|+++++.+..+|.  +..+++|+.|++++|.++.+++..+..+++|++|++++|.+..+| ..++.+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            3677888888887777665  366778888888888887776655777788888888888775554 4467788888888


Q ss_pred             ecccccccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCC
Q 037045          339 LRSSCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENV  393 (424)
Q Consensus       339 l~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~  393 (424)
                      +  .++.+..+|.. ++.+++|+.|++++|.++.++.. +..+++|++|++++|.+.
T Consensus       124 L--~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          124 L--ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             C--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             C--CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            8  67777777765 46778888888888877766443 777788888888887654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.46  E-value=1.8e-13  Score=129.20  Aligned_cols=130  Identities=22%  Similarity=0.274  Sum_probs=110.3

Q ss_pred             cceeEEEeeccCCCCCCC--Cc-CcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceee
Q 037045          263 AHTKRLSLFGFPSSTLPD--MP-NCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALF  338 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~  338 (424)
                      +.++.|++++|.++.++.  +. .+++|+.|++++|.++.+++..+..+++|++|++++|.+..+|+ .+..+++|++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            668899999999998653  34 88999999999999998887778889999999999999977764 588999999999


Q ss_pred             ecccccccccC-ChhhhccCCCCEEEecCCcCcccchhh----hcCCCCCEeeeccccCCC
Q 037045          339 LRSSCSLLLQL-PAEIGRLQKLEILDVSHTKVQCLPSEI----GQLIELKYLRVSRVENVG  394 (424)
Q Consensus       339 l~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~i----~~l~~L~~l~l~~n~~~~  394 (424)
                      +  +++.+..+ |..+..+++|+.|++++|.++.+|..+    ..+++|++|++++|.+.+
T Consensus       119 L--~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A          119 L--YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             C--CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             C--CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            9  78888876 557889999999999999999998874    578999999999997653

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.46  E-value=1.6e-12  Score=121.96  Aligned_cols=168  Identities=10%  Similarity=0.035  Sum_probs=112.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC------CHHHHHHHHHHHhccc--------------c-
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG------NIRDIQEIILERLKVN--------------A-   60 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~i~~~l~~~--------------~-   60 (424)
                      +++.|+|+.|+|||||++++++..  .     .+|+++....      +...+...+...+...              . 
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  104 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNER--P-----GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFL  104 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHS--S-----EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGG
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHc--C-----cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecce
Confidence            478999999999999999999875  1     7788876542      5666777776665430              0 


Q ss_pred             ----cccChhHHHHHHHHHhcc-CcEEEEEcCCCCcch---------hhhh-ccCCCCCCcEEEEEecchhh-h------
Q 037045           61 ----KELNNDLRADIISKELND-RSYVLFLDGVSSEIN---------FKEI-GMHDDHGRGKVVFACRSREF-C------  118 (424)
Q Consensus        61 ----~~~~~~~~~~~l~~~l~~-~~~LlvlD~~~~~~~---------~~~~-~~~~~~~~~~iiittr~~~~-~------  118 (424)
                          ...+..+....+.+.... ++++|||||++....         +..+ .......+..+|+|++.... .      
T Consensus       105 ~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~  184 (350)
T 2qen_A          105 TLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKIT  184 (350)
T ss_dssp             TSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTT
T ss_pred             eeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhc
Confidence                112334445555554443 489999999987543         1222 11122257889999876532 1      


Q ss_pred             c-------ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045          119 W-------QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKEL  178 (424)
Q Consensus       119 ~-------~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l  178 (424)
                      .       .....+++.+|+.+|+.+++.+......  ....++.+..|++.++|+|+++..++..+
T Consensus       185 ~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~--~~~~~~~~~~i~~~tgG~P~~l~~~~~~~  249 (350)
T 2qen_A          185 DYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN--LDVPENEIEEAVELLDGIPGWLVVFGVEY  249 (350)
T ss_dssp             CTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT--CCCCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            1       1124789999999999999987654321  11224567889999999999999988754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.46  E-value=2e-13  Score=141.73  Aligned_cols=148  Identities=23%  Similarity=0.313  Sum_probs=97.0

Q ss_pred             cceeEEEeeccCCCC-CC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcCChhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSST-LP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~l~l  339 (424)
                      ++++.|++++|.+.. +| .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+ +.+|..++.+++|++|++
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  473 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL  473 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence            456666666666553 33 345666777777777777654444466667777777777766 456666777777777777


Q ss_pred             cccccccc-cCChhhhccCCCCEEEecCCcCc-ccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcccc
Q 037045          340 RSSCSLLL-QLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRL  417 (424)
Q Consensus       340 ~~~~~~~~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~  417 (424)
                        .++.+. .+|..++.+++|+.|++++|+++ .+|..++.+++|++|++++|.+.|..            +..++.+++
T Consensus       474 --~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~------------p~~l~~l~~  539 (768)
T 3rgz_A          474 --DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI------------PAELGDCRS  539 (768)
T ss_dssp             --CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC------------CGGGGGCTT
T ss_pred             --cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC------------CHHHcCCCC
Confidence              444444 56666777777777777777766 66666777777777777777665443            346778888


Q ss_pred             CceeecC
Q 037045          418 LEELIIE  424 (424)
Q Consensus       418 L~~L~l~  424 (424)
                      |++|+|+
T Consensus       540 L~~L~Ls  546 (768)
T 3rgz_A          540 LIWLDLN  546 (768)
T ss_dssp             CCEEECC
T ss_pred             CCEEECC
Confidence            8888764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.46  E-value=8.1e-13  Score=124.00  Aligned_cols=142  Identities=19%  Similarity=0.292  Sum_probs=67.6

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++|++|++++|.+..++.+..+++|+.|++++|.++.++.  +..+++|++|++++|.+..++. +..+++|+++++  .
T Consensus        66 ~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l--~  140 (347)
T 4fmz_A           66 TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNL--G  140 (347)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEEC--T
T ss_pred             CCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccCchh-hccCCceeEEEC--C
Confidence            4444444444444444334444445555555444444432  3444445555555444444333 444444555554  3


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      .+.....+..+..+++|+.|++++|.+..++. +..+++|++|++++|.+              ..+..+..+++|++|+
T Consensus       141 ~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l--------------~~~~~~~~l~~L~~L~  205 (347)
T 4fmz_A          141 ANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI--------------EDISPLASLTSLHYFT  205 (347)
T ss_dssp             TCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC--------------CCCGGGGGCTTCCEEE
T ss_pred             CCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc--------------cccccccCCCccceee
Confidence            33222222224444555555555554444432 44555555555555532              3334467777777776


Q ss_pred             cC
Q 037045          423 IE  424 (424)
Q Consensus       423 l~  424 (424)
                      ++
T Consensus       206 l~  207 (347)
T 4fmz_A          206 AY  207 (347)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.45  E-value=8.7e-14  Score=123.49  Aligned_cols=125  Identities=17%  Similarity=0.260  Sum_probs=50.3

Q ss_pred             ceeEEEeeccCCCCCCC--CcCcccccEEEccCCC-CCCCChHHhcccCCCcEEEccC-CCCCcCC-hhhhcccccceee
Q 037045          264 HTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKR-LEKLPTSFFDYMCHLQLLDLHE-TNIGCLP-PSISRLINLNALF  338 (424)
Q Consensus       264 ~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~-~~~~~~p-~~~~~l~~L~~l~  338 (424)
                      +++.|++++|.++.++.  +..+++|+.|++++|. ++.+++..+..+++|++|++++ |.+..+| ..+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            34444444444444322  2334444444444443 4444333334444444444443 3443333 2233444444444


Q ss_pred             ecccccccccCChhhhccCCCC---EEEecCC-cCcccchh-hhcCCCCC-Eeeecccc
Q 037045          339 LRSSCSLLLQLPAEIGRLQKLE---ILDVSHT-KVQCLPSE-IGQLIELK-YLRVSRVE  391 (424)
Q Consensus       339 l~~~~~~~~~lp~~~~~l~~L~---~L~l~~~-~i~~lp~~-i~~l~~L~-~l~l~~n~  391 (424)
                      +  .++.+..+|. ++.+++|+   .|++++| .++.+|.. +..+++|+ .+++++|.
T Consensus       112 l--~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C          112 I--FNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG  167 (239)
T ss_dssp             E--EEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred             C--CCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence            4  3333333433 33333333   4444444 34433332 33444444 44444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=5.8e-14  Score=118.43  Aligned_cols=133  Identities=17%  Similarity=0.229  Sum_probs=110.1

Q ss_pred             CCCCcCcccccEEEccCCCCCCCChHHhccc-CCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChhh-hc
Q 037045          278 LPDMPNCCEILTLILEGKRLEKLPTSFFDYM-CHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEI-GR  355 (424)
Q Consensus       278 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~-~~  355 (424)
                      .+....+++|+.|++++|.++.++.  +..+ ++|++|++++|.+..+ ..++.+++|++|++  +++.+..+|+.+ +.
T Consensus        12 ~~~~~~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~L--s~N~l~~~~~~~~~~   86 (176)
T 1a9n_A           12 AAQYTNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLV--NNNRICRIGEGLDQA   86 (176)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEEC--CSSCCCEECSCHHHH
T ss_pred             HHhcCCcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEEC--CCCcccccCcchhhc
Confidence            4556778999999999999998854  3444 4999999999999777 67899999999999  889999888665 89


Q ss_pred             cCCCCEEEecCCcCcccch--hhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045          356 LQKLEILDVSHTKVQCLPS--EIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       356 l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                      +++|+.|++++|.++.+|.  .+..+++|++|++++|++...         .......++.+++|++|+++
T Consensus        87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~---------~~~~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK---------KHYRLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS---------TTHHHHHHHHCTTCSEETTE
T ss_pred             CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc---------HhHHHHHHHHCCccceeCCC
Confidence            9999999999999999987  689999999999999976421         11112248899999999863

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.45  E-value=1.6e-13  Score=121.81  Aligned_cols=147  Identities=10%  Similarity=0.104  Sum_probs=124.4

Q ss_pred             cceeEEEeeccC-CCCCC--CCcCcccccEEEccC-CCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccc---
Q 037045          263 AHTKRLSLFGFP-SSTLP--DMPNCCEILTLILEG-KRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLN---  335 (424)
Q Consensus       263 ~~l~~L~l~~~~-~~~~~--~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~---  335 (424)
                      ++|+.|++++|. ++.++  .+..+++|+.|++++ |.++.++...+..+++|++|++++|.+..+|. +..+++|+   
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~  133 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFF  133 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEE
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-ccccccccccc
Confidence            899999999997 88765  358899999999998 99999888778889999999999999988887 88888888   


Q ss_pred             eeeeccccc-ccccCCh-hhhccCCCC-EEEecCCcCcccchhhhcCCCCCEeeecccc-CCCCcccCCCCCCCCcChhh
Q 037045          336 ALFLRSSCS-LLLQLPA-EIGRLQKLE-ILDVSHTKVQCLPSEIGQLIELKYLRVSRVE-NVGNHTHADAGSGEMISLNI  411 (424)
Q Consensus       336 ~l~l~~~~~-~~~~lp~-~~~~l~~L~-~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~~~~  411 (424)
                      ++++  +.+ .+..+|. .+..+++|+ .|++++|.++.+|......++|++|++++|. +.+.            ....
T Consensus       134 ~L~l--~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i------------~~~~  199 (239)
T 2xwt_C          134 ILEI--TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVI------------DKDA  199 (239)
T ss_dssp             EEEE--ESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEE------------CTTT
T ss_pred             EEEC--CCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccC------------CHHH
Confidence            9999  666 8888876 488999999 9999999999998875455899999999995 5321            2235


Q ss_pred             hhcc-ccCceeecC
Q 037045          412 ISKL-RLLEELIIE  424 (424)
Q Consensus       412 l~~l-~~L~~L~l~  424 (424)
                      ++.+ ++|++|+++
T Consensus       200 ~~~l~~~L~~L~l~  213 (239)
T 2xwt_C          200 FGGVYSGPSLLDVS  213 (239)
T ss_dssp             TTTCSBCCSEEECT
T ss_pred             hhccccCCcEEECC
Confidence            6777 889999875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.45  E-value=1.8e-13  Score=142.19  Aligned_cols=146  Identities=18%  Similarity=0.224  Sum_probs=118.6

Q ss_pred             cceeEEEeeccCCCC------------------CCCC-c--CcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCC-
Q 037045          263 AHTKRLSLFGFPSST------------------LPDM-P--NCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETN-  320 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~------------------~~~~-~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-  320 (424)
                      ++|+.|++++|.++.                  +|.. .  .+++|+.|++++|.+.+..+..+..+++|+.|++++|. 
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~  527 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG  527 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence            789999999999988                  6643 5  79999999999998775444558889999999999997 


Q ss_pred             CC--cCChhhhccc-------ccceeeecccccccccCCh--hhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeecc
Q 037045          321 IG--CLPPSISRLI-------NLNALFLRSSCSLLLQLPA--EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSR  389 (424)
Q Consensus       321 ~~--~~p~~~~~l~-------~L~~l~l~~~~~~~~~lp~--~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~  389 (424)
                      +.  .+|..++.+.       +|+.|++  +++.+..+|.  .++.+++|+.|++++|.++.+| .++.+++|+.|++++
T Consensus       528 lsg~~iP~~i~~L~~~~~~l~~L~~L~L--s~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          528 ISAAQLKADWTRLADDEDTGPKIQIFYM--GYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDY  604 (876)
T ss_dssp             SCHHHHHHHHHHHHHCTTTTTTCCEEEC--CSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCS
T ss_pred             cccccchHHHHhhhhcccccCCccEEEe--eCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcC
Confidence            74  5888777776       9999999  7888889998  8999999999999999988888 788999999999999


Q ss_pred             ccCCCCcccCCCCCCCCcChhhhhcccc-CceeecC
Q 037045          390 VENVGNHTHADAGSGEMISLNIISKLRL-LEELIIE  424 (424)
Q Consensus       390 n~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~  424 (424)
                      |.+. .+|            ..++++++ |++|+|+
T Consensus       605 N~l~-~lp------------~~l~~l~~~L~~L~Ls  627 (876)
T 4ecn_A          605 NQIE-EIP------------EDFCAFTDQVEGLGFS  627 (876)
T ss_dssp             SCCS-CCC------------TTSCEECTTCCEEECC
T ss_pred             Cccc-cch------------HHHhhccccCCEEECc
Confidence            9765 333            24555665 6666553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.44  E-value=2.6e-13  Score=136.18  Aligned_cols=130  Identities=27%  Similarity=0.294  Sum_probs=109.1

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l  339 (424)
                      ++++.|++++|.++.++  .+..+++|+.|++++|.++++++..+..+++|++|++++|.+..+| ..++.+++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            67889999999988754  4588899999999999998887777888899999999999886655 67888999999999


Q ss_pred             cccccccccCCh-hhhccCCCCEEEecCCcCcc--cchhhhcCCCCCEeeeccccCCC
Q 037045          340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQC--LPSEIGQLIELKYLRVSRVENVG  394 (424)
Q Consensus       340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~l~l~~n~~~~  394 (424)
                        ..+.+..+|. .++.+++|++|++++|.++.  +|..++++++|++|++++|.+.+
T Consensus       108 --~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A          108 --VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             --TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred             --cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence              7788887775 68888999999999998774  68888999999999999987654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.44  E-value=1.6e-13  Score=137.16  Aligned_cols=134  Identities=20%  Similarity=0.287  Sum_probs=107.8

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l  339 (424)
                      +++++|++++|.++.++  .+..+++|++|++++|.+++.++..+..+++|++|++++|.+..+|+. ++.+++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            67889999999888743  458888899999999998887766678888999999999988777654 888899999999


Q ss_pred             ccccccccc--CChhhhccCCCCEEEecCCc-Ccccch-hhhcCCCCCEeeeccccCCCCccc
Q 037045          340 RSSCSLLLQ--LPAEIGRLQKLEILDVSHTK-VQCLPS-EIGQLIELKYLRVSRVENVGNHTH  398 (424)
Q Consensus       340 ~~~~~~~~~--lp~~~~~l~~L~~L~l~~~~-i~~lp~-~i~~l~~L~~l~l~~n~~~~~~~~  398 (424)
                        +++.+..  .|..++.+++|+.|++++|. +..+|. .+..+++|++|++++|.+.+..|.
T Consensus       106 --s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  166 (549)
T 2z81_A          106 --MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ  166 (549)
T ss_dssp             --TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             --CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence              7777764  46678888899999998887 667764 588888899999998887665443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.44  E-value=9.9e-13  Score=128.02  Aligned_cols=118  Identities=14%  Similarity=0.180  Sum_probs=74.3

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++++.|++++|.++.+|.+..+++|+.|++++|.+++++   +..+++|++|++++|.+..+|  ++.+++|++|++  +
T Consensus        42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L--~  114 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC--D  114 (457)
T ss_dssp             TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC--C
T ss_pred             CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC--C
Confidence            566667777766666666666666777777766666654   455666666666666665553  566666666666  5


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeecccc
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVE  391 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~  391 (424)
                      .+.+..+|  ++.+++|+.|++++|.++.+|  ++.+++|++|++++|.
T Consensus       115 ~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          115 TNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNK  159 (457)
T ss_dssp             SSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCS
T ss_pred             CCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCC
Confidence            55665554  566666666666666666553  4555555555555554

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=99.44  E-value=3.5e-12  Score=119.97  Aligned_cols=211  Identities=10%  Similarity=0.082  Sum_probs=125.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-----CCHHHHHHHHHHHhcc------------------
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-----GNIRDIQEIILERLKV------------------   58 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~~~l~~------------------   58 (424)
                      +++.|+|++|+|||||++++++...  .   ..+|+++...     .+...+...+.+.+..                  
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~  105 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGI  105 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceE
Confidence            4789999999999999999999873  2   2688887653     3555666655554421                  


Q ss_pred             cc-----c-------ccChhHHHHHHHHHhccCcEEEEEcCCCCcch-----h-hhh-ccCCCCCCcEEEEEecchhhh-
Q 037045           59 NA-----K-------ELNNDLRADIISKELNDRSYVLFLDGVSSEIN-----F-KEI-GMHDDHGRGKVVFACRSREFC-  118 (424)
Q Consensus        59 ~~-----~-------~~~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~-----~-~~~-~~~~~~~~~~iiittr~~~~~-  118 (424)
                      ..     .       ..........+.+... ++++|||||++....     + ..+ .+.....+..+|+|++..... 
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~  184 (357)
T 2fna_A          106 VIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLY  184 (357)
T ss_dssp             EECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHH
T ss_pred             EecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHH
Confidence            00     0       1122233333333211 489999999987432     1 112 111222467899999875321 


Q ss_pred             ------c------cc-CceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchH
Q 037045          119 ------W------QA-DGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVA  185 (424)
Q Consensus       119 ------~------~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~  185 (424)
                            .      .. ...+.+.+|+.+|+.+++.............    ...|++.|+|+|+++..++..+....+..
T Consensus       185 ~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~  260 (357)
T 2fna_A          185 DYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIGGIPGWLTYFGFIYLDNKNLD  260 (357)
T ss_dssp             HHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHHHHHHHHHHHHHHCCHH
T ss_pred             HHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHHHHhCCCHHHHHHHHHHHccccchH
Confidence                  1      11 3578999999999999998865422111222    16799999999999999987764322333


Q ss_pred             HHHHH-HHHhhhcCcccccchhhhhHHHhhhh---ccCCcchHhHHhhhhh
Q 037045          186 IWRAT-ADELRLTSSEEKKELEEVDRFFTLVY---KNLSLEQQHCLLGWAI  232 (424)
Q Consensus       186 ~~~~~-~~~l~~~~~~~~~~~~~i~~~l~~s~---~~L~~~~k~~~~~la~  232 (424)
                      .|... .+....          .+...+...+   ..+++..+.++..+|.
T Consensus       261 ~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~~~~~~l~~la~  301 (357)
T 2fna_A          261 FAINQTLEYAKK----------LILKEFENFLHGREIARKRYLNIMRTLSK  301 (357)
T ss_dssp             HHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH----------HHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence            33221 111100          1111121111   1577778888888887

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.44  E-value=3.1e-13  Score=112.96  Aligned_cols=129  Identities=19%  Similarity=0.193  Sum_probs=107.8

Q ss_pred             CcccccEEEccCCCCC--CCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccccccccc-CChhhhccCCC
Q 037045          283 NCCEILTLILEGKRLE--KLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQ-LPAEIGRLQKL  359 (424)
Q Consensus       283 ~~~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~-lp~~~~~l~~L  359 (424)
                      ..++|+.|++++|.++  .++.. +..+++|++|++++|.+..+ ..++.+++|++|++  +++.+.. +|..+..+++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L--s~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLEL--SENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEE--ESCCCCSCCCHHHHHCTTC
T ss_pred             CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEEC--cCCcCchHHHHHHhhCCCC
Confidence            3478999999999998  66654 68899999999999999776 77899999999999  7888876 77778889999


Q ss_pred             CEEEecCCcCcccc--hhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045          360 EILDVSHTKVQCLP--SEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       360 ~~L~l~~~~i~~lp--~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                      +.|++++|.++.+|  ..+..+++|++|++++|.+.+..+         .....+..+++|++|+++
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~---------~~~~~~~~l~~L~~L~l~  155 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND---------YRESVFKLLPQLTYLDGY  155 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT---------HHHHHHTTCSSCCEETTE
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH---------HHHHHHHhCccCcEecCC
Confidence            99999999999886  568999999999999998653211         111368899999999873

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.44  E-value=9.9e-13  Score=110.92  Aligned_cols=129  Identities=22%  Similarity=0.339  Sum_probs=110.5

Q ss_pred             eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeeeccccc
Q 037045          266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFLRSSCS  344 (424)
Q Consensus       266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l~~~~~  344 (424)
                      +.++++++.+..+|.. -.++|+.|++++|.++.++...+..+++|++|++++|.+..+|+. +..+++|++|++  +++
T Consensus        10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL--HEN   86 (177)
T ss_dssp             TEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC--CSS
T ss_pred             CEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC--CCC
Confidence            5788889998887742 347899999999999998887778899999999999999777654 689999999999  888


Q ss_pred             ccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcc
Q 037045          345 LLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHT  397 (424)
Q Consensus       345 ~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~  397 (424)
                      .+..+|.. +..+++|+.|++++|.++.+|.. +..+++|++|++++|++.+..+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            88888764 68899999999999999988877 5889999999999998776543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.43  E-value=1.3e-13  Score=124.24  Aligned_cols=140  Identities=18%  Similarity=0.200  Sum_probs=120.8

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      .++..+++.++.++.++....+++|+.|++++|.++.++.  +..+++|+.|++++|.+..+|+ +..+++|++|++  +
T Consensus        19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L--~   93 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV--N   93 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC--C
T ss_pred             HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC--C
Confidence            3445566777888887777899999999999999999883  7889999999999999988877 999999999999  8


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      ++.+..+|....  ++|+.|++++|.++.+| .+..+++|+.|++++|.+.              .+..++.+++|++|+
T Consensus        94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~--------------~~~~l~~l~~L~~L~  156 (263)
T 1xeu_A           94 RNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLK--------------SIVMLGFLSKLEVLD  156 (263)
T ss_dssp             SSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCC--------------BCGGGGGCTTCCEEE
T ss_pred             CCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCC--------------CChHHccCCCCCEEE
Confidence            899988876443  89999999999999986 5999999999999999754              235788999999998


Q ss_pred             cC
Q 037045          423 IE  424 (424)
Q Consensus       423 l~  424 (424)
                      ++
T Consensus       157 L~  158 (263)
T 1xeu_A          157 LH  158 (263)
T ss_dssp             CT
T ss_pred             CC
Confidence            75

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.43  E-value=1.4e-12  Score=124.41  Aligned_cols=125  Identities=18%  Similarity=0.208  Sum_probs=92.1

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l  339 (424)
                      ++|+.|++++|.+..++  .+..+++|+.|++++|.++..++..+..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence            67888888888887743  457788888888888888887776677788888888888888777765 577888888888


Q ss_pred             cccccccccCCh-hhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeecccc
Q 037045          340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVE  391 (424)
Q Consensus       340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~  391 (424)
                        +++.+..++. .++.+++|+.|++++|.++.++  +..+++|+++++++|.
T Consensus       149 --~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          149 --SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL  197 (390)
T ss_dssp             --CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred             --CCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccc
Confidence              6777766643 5777888888888888877664  3444555555444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.43  E-value=1e-12  Score=132.59  Aligned_cols=125  Identities=18%  Similarity=0.208  Sum_probs=87.2

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l  339 (424)
                      ++|+.|++++|.+..++  .+..+++|+.|++++|.++++++..+..+++|++|++++|.+..+|+. ++.+++|++|++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            67778888887777743  457777788888888888777776667777888888888877766655 477778888887


Q ss_pred             cccccccccCCh-hhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeecccc
Q 037045          340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVE  391 (424)
Q Consensus       340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~  391 (424)
                        +++.+..+++ .++.+++|+.|++++|.++.+|  ++.+++|++|++++|.
T Consensus       155 --s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          155 --SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             --CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred             --eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCc
Confidence              6666665543 5777778888888877777664  3444555554444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.43  E-value=1.5e-12  Score=122.19  Aligned_cols=142  Identities=15%  Similarity=0.210  Sum_probs=114.5

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++|++|++++|.+..++.+..+++|+.|++++|.++..+.  +..+++|+.|++++|.....++.+..+++|++|++  .
T Consensus        88 ~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l--~  163 (347)
T 4fmz_A           88 VKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV--T  163 (347)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEEC--C
T ss_pred             CcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEe--c
Confidence            7889999999988888878888899999999998888776  67788899999998865334445888889999998  7


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      ++.+..++. +..+++|+.|++++|.+..++. +..+++|+.+++++|.+.              .+..++.+++|++|+
T Consensus       164 ~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~--------------~~~~~~~~~~L~~L~  227 (347)
T 4fmz_A          164 ESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQIT--------------DITPVANMTRLNSLK  227 (347)
T ss_dssp             SSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC--------------CCGGGGGCTTCCEEE
T ss_pred             CCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCC--------------CCchhhcCCcCCEEE
Confidence            777777765 7788889999999988888865 788888999999888643              223377888888888


Q ss_pred             cC
Q 037045          423 IE  424 (424)
Q Consensus       423 l~  424 (424)
                      ++
T Consensus       228 l~  229 (347)
T 4fmz_A          228 IG  229 (347)
T ss_dssp             CC
T ss_pred             cc
Confidence            74

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.43  E-value=6.4e-13  Score=131.83  Aligned_cols=123  Identities=20%  Similarity=0.159  Sum_probs=102.0

Q ss_pred             eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeeeccccc
Q 037045          266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFLRSSCS  344 (424)
Q Consensus       266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l~~~~~  344 (424)
                      ++|++++|.++.+|.... ++|+.|++++|.+++.++..+..+++|++|++++|.+..+ |..++.+++|++|++  +++
T Consensus         3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL--SHN   79 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC--CSS
T ss_pred             ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec--CCC
Confidence            578888998888775332 7899999999999988877788889999999999988665 667888999999999  788


Q ss_pred             ccccCChhhhccCCCCEEEecCCcCcc--cchhhhcCCCCCEeeeccccCC
Q 037045          345 LLLQLPAEIGRLQKLEILDVSHTKVQC--LPSEIGQLIELKYLRVSRVENV  393 (424)
Q Consensus       345 ~~~~lp~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~l~l~~n~~~  393 (424)
                      .+..+|..  .+++|++|++++|.++.  +|..++++++|++|++++|.+.
T Consensus        80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence            88888876  78899999999998775  5677889999999999988754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.43  E-value=5.5e-13  Score=125.89  Aligned_cols=147  Identities=20%  Similarity=0.155  Sum_probs=118.3

Q ss_pred             eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhc-ccCCCcEEEccCCCCCcCC-hhhhcccccceeeecccc
Q 037045          266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFD-YMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRSSC  343 (424)
Q Consensus       266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~~~  343 (424)
                      +.++++++.++.+|.. -...++.|++++|.++.++...+. .+++|+.|++++|.+..++ ..+..+++|++|++  +.
T Consensus        21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L--s~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL--SS   97 (361)
T ss_dssp             TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC--CS
T ss_pred             CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC--CC
Confidence            5789999999988753 234689999999999998887676 8999999999999997776 56999999999999  88


Q ss_pred             cccccCCh-hhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCcee
Q 037045          344 SLLLQLPA-EIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEEL  421 (424)
Q Consensus       344 ~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  421 (424)
                      +.+..+|. .+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+.+. |        ...+..++.+++|++|
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l-~--------~~~~~~~~~l~~L~~L  168 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF-P--------VELIKDGNKLPKLMLL  168 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC-C--------GGGTC----CTTCCEE
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee-C--------HHHhcCcccCCcCCEE
Confidence            88888876 588999999999999999977 44599999999999999987642 1        1222233667788887


Q ss_pred             ecC
Q 037045          422 IIE  424 (424)
Q Consensus       422 ~l~  424 (424)
                      +|+
T Consensus       169 ~L~  171 (361)
T 2xot_A          169 DLS  171 (361)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.43  E-value=6.4e-13  Score=134.88  Aligned_cols=143  Identities=25%  Similarity=0.245  Sum_probs=121.1

Q ss_pred             EEEeeccCCCCCCCCcCc-ccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeeeccccc
Q 037045          267 RLSLFGFPSSTLPDMPNC-CEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRSSCS  344 (424)
Q Consensus       267 ~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l~~~~~  344 (424)
                      +.+.++..++.+|.  .+ ++++.|++++|.++.+++..|..+++|++|++++|.+..+|+ .|..+++|++|++  +++
T Consensus        35 ~~~c~~~~l~~vP~--~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~L--s~N  110 (635)
T 4g8a_A           35 TYQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL--TGN  110 (635)
T ss_dssp             EEECTTSCCSSCCS--SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC--TTC
T ss_pred             EEECCCCCcCccCC--CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEc--cCC
Confidence            45666667777764  23 379999999999999998779999999999999999988765 6899999999999  888


Q ss_pred             ccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          345 LLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       345 ~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      .+..+|. .+..+++|++|++++|.++.+|.. ++++++|++|++++|.+.+           ......++.+++|++|+
T Consensus       111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~-----------~~~~~~~~~l~~L~~L~  179 (635)
T 4g8a_A          111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-----------FKLPEYFSNLTNLEHLD  179 (635)
T ss_dssp             CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC-----------CCCCGGGGGCTTCCEEE
T ss_pred             cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc-----------CCCchhhccchhhhhhc
Confidence            9999886 578999999999999999998875 8999999999999997643           23445678888888888


Q ss_pred             cC
Q 037045          423 IE  424 (424)
Q Consensus       423 l~  424 (424)
                      ++
T Consensus       180 L~  181 (635)
T 4g8a_A          180 LS  181 (635)
T ss_dssp             CC
T ss_pred             cc
Confidence            74

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.43  E-value=5.1e-13  Score=131.07  Aligned_cols=147  Identities=26%  Similarity=0.310  Sum_probs=77.9

Q ss_pred             cceeEEEeeccCCCCC-C-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTL-P-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l  339 (424)
                      ++|+.|++++|.+..+ | .+..+++|+.|++++|.++.++...+..+++|++|++++|.+..+ |..+..+++|++|++
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l  135 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV  135 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred             CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence            4555555555555542 2 234555555555555555555554445555555555555555332 334555555555555


Q ss_pred             cccccccccC-ChhhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcccc
Q 037045          340 RSSCSLLLQL-PAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRL  417 (424)
Q Consensus       340 ~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~  417 (424)
                        ..+.+..+ |..+..+++|+.|++++|.++.+|.. +.++++|+.|++++|.+.+.            ....+..+++
T Consensus       136 --~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~------------~~~~~~~l~~  201 (477)
T 2id5_A          136 --GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI------------RDYSFKRLYR  201 (477)
T ss_dssp             --CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE------------CTTCSCSCTT
T ss_pred             --CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe------------ChhhcccCcc
Confidence              44444433 23455555556666655555555443 55555666666665544321            1224566777


Q ss_pred             Cceeec
Q 037045          418 LEELII  423 (424)
Q Consensus       418 L~~L~l  423 (424)
                      |++|++
T Consensus       202 L~~L~l  207 (477)
T 2id5_A          202 LKVLEI  207 (477)
T ss_dssp             CCEEEE
T ss_pred             cceeeC
Confidence            777765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.42  E-value=5.4e-13  Score=130.91  Aligned_cols=130  Identities=18%  Similarity=0.288  Sum_probs=69.6

Q ss_pred             cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l  339 (424)
                      ++|+.|++++|.+..+|.  +..+++|+.|++++|.++..++..+..+++|+.|++++|.+..+ |..+..+++|+.|++
T Consensus        80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  159 (477)
T 2id5_A           80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL  159 (477)
T ss_dssp             TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred             ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence            455555555555555442  24555555566655555554444455555555555555555333 334555555555555


Q ss_pred             cccccccccCCh-hhhccCCCCEEEecCCcCcccch-hhhcCCCCCEeeeccccCCC
Q 037045          340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPS-EIGQLIELKYLRVSRVENVG  394 (424)
Q Consensus       340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~l~l~~n~~~~  394 (424)
                        ..+.+..+|. .+..+++|+.|++++|.+..++. .+..+++|++|++++|...+
T Consensus       160 --~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~  214 (477)
T 2id5_A          160 --EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD  214 (477)
T ss_dssp             --ESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred             --CCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence              4555555543 35555555555555555554433 25555555555555554433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.42  E-value=3.9e-13  Score=135.60  Aligned_cols=134  Identities=22%  Similarity=0.257  Sum_probs=117.9

Q ss_pred             hccccceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccc
Q 037045          259 KIGDAHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLN  335 (424)
Q Consensus       259 d~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~  335 (424)
                      ++..++++.++++++.+..+|.  +..+++|+.|++++|.++.+++..+..+++|++|++++|.+..+|+ .++.+++|+
T Consensus        47 ~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           47 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             SGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            3344889999999999998775  4789999999999999999887668999999999999999976654 579999999


Q ss_pred             eeeecccccccccCChh-hhccCCCCEEEecCCcCcccch-hhhcCCCCCEeeeccccCCC
Q 037045          336 ALFLRSSCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPS-EIGQLIELKYLRVSRVENVG  394 (424)
Q Consensus       336 ~l~l~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~l~l~~n~~~~  394 (424)
                      +|++  +++.+..+|.. ++.+++|+.|++++|.++.+|+ .+..+++|++|++++|.+.+
T Consensus       127 ~L~L--~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          127 VLVL--ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             EEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             EEEe--eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            9999  88899999876 5899999999999999987765 48999999999999998754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.42  E-value=1.7e-12  Score=120.93  Aligned_cols=146  Identities=13%  Similarity=0.198  Sum_probs=74.8

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCC---cCChhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIG---CLPPSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~---~~p~~~~~l~~L~~l~l  339 (424)
                      ++|++|++++|.++.+|... .++|+.|++++|.++..+...+..+++|+.|++++|.+.   ..+..+..+++|++|++
T Consensus       100 ~~L~~L~Ls~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l  178 (330)
T 1xku_A          100 VKLERLYLSKNQLKELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI  178 (330)
T ss_dssp             TTCCEEECCSSCCSBCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCccChhh-cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence            45555555555555544321 145555555555555555554555566666666665552   23344555555555555


Q ss_pred             cccccccccCCh----------------------hhhccCCCCEEEecCCcCcccch-hhhcCCCCCEeeeccccCCCCc
Q 037045          340 RSSCSLLLQLPA----------------------EIGRLQKLEILDVSHTKVQCLPS-EIGQLIELKYLRVSRVENVGNH  396 (424)
Q Consensus       340 ~~~~~~~~~lp~----------------------~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~l~l~~n~~~~~~  396 (424)
                        ..+.+..+|.                      .+..+++|+.|++++|.++.++. .+..+++|++|++++|.+.   
T Consensus       179 --~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~---  253 (330)
T 1xku_A          179 --ADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV---  253 (330)
T ss_dssp             --CSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS---
T ss_pred             --CCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc---
Confidence              4444444443                      34444445555555544443332 2444445555555554332   


Q ss_pred             ccCCCCCCCCcChhhhhccccCceeecC
Q 037045          397 THADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       397 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                                .....+..+++|++|+++
T Consensus       254 ----------~lp~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          254 ----------KVPGGLADHKYIQVVYLH  271 (330)
T ss_dssp             ----------SCCTTTTTCSSCCEEECC
T ss_pred             ----------cCChhhccCCCcCEEECC
Confidence                      223356777777777764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.42  E-value=1.7e-12  Score=127.03  Aligned_cols=123  Identities=20%  Similarity=0.281  Sum_probs=59.0

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++|+.|++++|.+..++.+..+++|+.|++++|.+++.++  +..+++|+.|++++|.+..+|+ +..+++|+.|++  .
T Consensus       221 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L--~  295 (466)
T 1o6v_A          221 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLEL--N  295 (466)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEEC--C
T ss_pred             CCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEc--C
Confidence            4455555555555444444445555555555555554443  3444555555555554444333 444555555555  4


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccC
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVEN  392 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~  392 (424)
                      ++.+..++. ++.+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus       296 ~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l  343 (466)
T 1o6v_A          296 ENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKV  343 (466)
T ss_dssp             SSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCC
T ss_pred             CCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCcc
Confidence            444444433 4444555555555554444332 44444555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.41  E-value=1.1e-12  Score=130.72  Aligned_cols=124  Identities=19%  Similarity=0.235  Sum_probs=83.5

Q ss_pred             cccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEec
Q 037045          286 EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVS  365 (424)
Q Consensus       286 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~  365 (424)
                      .|+.|++++|.++++|.  +..+++|+.|++++|.+..+|..++.+++|++|++  ++|.+..+| .++.+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L--s~N~l~~lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA--SDNALENVD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC--CSSCCCCCG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEEC--CCCCCCCCc-ccCCCCCCcEEECC
Confidence            36667777777776654  56677777777777777777777777777777777  666666666 67777777777777


Q ss_pred             CCcCccc--chhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeec
Q 037045          366 HTKVQCL--PSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELII  423 (424)
Q Consensus       366 ~~~i~~l--p~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  423 (424)
                      +|.++.+  |..++.+++|+.|++++|.+.+..+         .....+..+++|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~---------~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG---------IQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS---------CTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc---------HHHHHHHHCcccCccCC
Confidence            7777766  6667777777777777776654311         22233455677777654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.41  E-value=1.9e-13  Score=138.79  Aligned_cols=127  Identities=15%  Similarity=0.248  Sum_probs=82.9

Q ss_pred             cceeEEEeeccCCCC------------------CCC-Cc--CcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCC-
Q 037045          263 AHTKRLSLFGFPSST------------------LPD-MP--NCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETN-  320 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~------------------~~~-~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-  320 (424)
                      ++|+.|++++|.++.                  +|. +.  .+++|+.|++++|.+.+..+..+..+++|++|++++|. 
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~  285 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG  285 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence            567777777777766                  553 34  57777777777776664333336667777777777776 


Q ss_pred             CC--cCChhhhcc------cccceeeecccccccccCCh--hhhccCCCCEEEecCCcCc-ccchhhhcCCCCCEeeecc
Q 037045          321 IG--CLPPSISRL------INLNALFLRSSCSLLLQLPA--EIGRLQKLEILDVSHTKVQ-CLPSEIGQLIELKYLRVSR  389 (424)
Q Consensus       321 ~~--~~p~~~~~l------~~L~~l~l~~~~~~~~~lp~--~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~l~l~~  389 (424)
                      +.  .+|..++.+      ++|++|++  ..+.+..+|.  .++.+++|+.|++++|.++ .+| .++.+++|++|++++
T Consensus       286 l~~~~lp~~~~~L~~~~~l~~L~~L~L--~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~  362 (636)
T 4eco_A          286 ISGEQLKDDWQALADAPVGEKIQIIYI--GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY  362 (636)
T ss_dssp             SCHHHHHHHHHHHHHSGGGGTCCEEEC--CSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred             CccccchHHHHhhhccccCCCCCEEEC--CCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence            53  466666665      67777777  5666666666  6667777777777777666 666 566666666666666


Q ss_pred             ccC
Q 037045          390 VEN  392 (424)
Q Consensus       390 n~~  392 (424)
                      |.+
T Consensus       363 N~l  365 (636)
T 4eco_A          363 NQI  365 (636)
T ss_dssp             SEE
T ss_pred             Ccc
Confidence            654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.41  E-value=2.5e-13  Score=127.94  Aligned_cols=128  Identities=19%  Similarity=0.243  Sum_probs=106.9

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh--hhhcccccceee
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP--SISRLINLNALF  338 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~--~~~~l~~L~~l~  338 (424)
                      ++|+.|++++|.++.++  .+..+++|+.|++++|.++.++...+..+++|++|++++|.+..+|.  .+..+++|++|+
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~  155 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR  155 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence            78999999999988853  36888999999999999999988878889999999999999888876  688899999999


Q ss_pred             eccccc-ccccCC-hhhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccC
Q 037045          339 LRSSCS-LLLQLP-AEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVEN  392 (424)
Q Consensus       339 l~~~~~-~~~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~  392 (424)
                      +  +++ .+..++ ..++.+++|+.|++++|.++.+ |..+..+++|++|++++|.+
T Consensus       156 l--~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          156 V--GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             E--EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             C--CCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            9  454 566664 5688889999999999988755 66688888888888888864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.41  E-value=8.8e-13  Score=121.92  Aligned_cols=130  Identities=15%  Similarity=0.149  Sum_probs=104.2

Q ss_pred             cceeEEEeeccCCCC-CCC-C--cCcccccEEEccCCCCCCCChHHhccc-----CCCcEEEccCCCCCcCC-hhhhccc
Q 037045          263 AHTKRLSLFGFPSST-LPD-M--PNCCEILTLILEGKRLEKLPTSFFDYM-----CHLQLLDLHETNIGCLP-PSISRLI  332 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~-~~~-~--~~~~~L~~L~l~~~~l~~~~~~~~~~~-----~~L~~L~l~~~~~~~~p-~~~~~l~  332 (424)
                      ++|++|++++|.+.. .|. +  ..+++|+.|++++|.+++.|.. +..+     ++|++|++++|.+..++ ..++.++
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            789999999999985 454 3  7899999999999999988654 5555     89999999999996665 6789999


Q ss_pred             ccceeeecccccccc-c--CChhh--hccCCCCEEEecCCcCcccc---hh-hhcCCCCCEeeeccccCCCC
Q 037045          333 NLNALFLRSSCSLLL-Q--LPAEI--GRLQKLEILDVSHTKVQCLP---SE-IGQLIELKYLRVSRVENVGN  395 (424)
Q Consensus       333 ~L~~l~l~~~~~~~~-~--lp~~~--~~l~~L~~L~l~~~~i~~lp---~~-i~~l~~L~~l~l~~n~~~~~  395 (424)
                      +|++|++  +++.+. .  +|..+  +.+++|+.|++++|.++.+|   .. +..+++|++|++++|.+.+.
T Consensus       174 ~L~~L~L--s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  243 (312)
T 1wwl_A          174 ALSTLDL--SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA  243 (312)
T ss_dssp             SCCEEEC--CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred             CCCEEEC--CCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence            9999999  666543 3  34455  78899999999999988543   33 45778999999999987664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.41  E-value=9.1e-13  Score=135.10  Aligned_cols=131  Identities=19%  Similarity=0.210  Sum_probs=102.2

Q ss_pred             cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l  339 (424)
                      +++++|++++|.+..++.  +..+++|+.|++++|.+++.++..+..+++|++|++++|.+..+|+ .++.+++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            678888888888887653  5778888888888888888777667788888888888888877775 5888888888888


Q ss_pred             cccccccccCC-hhhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCC
Q 037045          340 RSSCSLLLQLP-AEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGN  395 (424)
Q Consensus       340 ~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~  395 (424)
                        +.+.+..+| ..++.+++|++|++++|.++.. |..++++++|++|++++|.+.+.
T Consensus       105 --~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A          105 --MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             --CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             --CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence              677777665 4678888888888888887754 44477888888888888876543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.41  E-value=1e-13  Score=128.52  Aligned_cols=127  Identities=14%  Similarity=0.059  Sum_probs=72.2

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHh-cccCCCcEEEccCCCCCcCChhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFF-DYMCHLQLLDLHETNIGCLPPSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l  339 (424)
                      ++|+.|++++|.++.++  .+..+++|+.|++++|.++..+...+ ..+++|++|++++|.+..+|. ...+++|++|++
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~L  198 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDL  198 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEEC
Confidence            45566666666655532  23455566666666666665433222 345566666666666544432 223566666666


Q ss_pred             cccccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccC
Q 037045          340 RSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVEN  392 (424)
Q Consensus       340 ~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~  392 (424)
                        +++.+..+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+
T Consensus       199 --s~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          199 --SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             --CSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCC
T ss_pred             --CCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCc
Confidence              555666665556666666666666666666665566666666666666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.41  E-value=3.7e-13  Score=132.17  Aligned_cols=127  Identities=16%  Similarity=0.137  Sum_probs=68.8

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCc-CChhhh-cccccceeeec
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGC-LPPSIS-RLINLNALFLR  340 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~p~~~~-~l~~L~~l~l~  340 (424)
                      ++|+.|++++|.+..++. ..+++|+.|++++|.+++.++..+..+++|++|++++|.+.. .|..+. .+++|++|++ 
T Consensus        99 ~~L~~L~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L-  176 (487)
T 3oja_A           99 PSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL-  176 (487)
T ss_dssp             TTCCEEECCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC-
T ss_pred             CCcCEEECcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec-
Confidence            445555555555554322 234556666666666665544445555666666666665533 333443 4566666666 


Q ss_pred             ccccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045          341 SSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV  393 (424)
Q Consensus       341 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~  393 (424)
                       +++.+..+|. ...+++|+.|++++|.++.+|+.+..+++|+.|++++|.+.
T Consensus       177 -s~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          177 -QYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             -TTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred             -CCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc
Confidence             5555555443 22355666666666666655555556666666666666543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.40  E-value=4.5e-13  Score=135.46  Aligned_cols=131  Identities=19%  Similarity=0.157  Sum_probs=84.6

Q ss_pred             cceeEEEeeccCCCCCC-CCcCcccccEEEccCCCCCCCCh-HHhcccCCCcEEEccCCCC-CcCChhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLP-DMPNCCEILTLILEGKRLEKLPT-SFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~l~l  339 (424)
                      ++|+.|++++|.+..+| .+..+++|+.|++++|.+++.++ ..+..+++|++|++++|.+ ...|..++.+++|++|++
T Consensus       376 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  455 (606)
T 3vq2_A          376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM  455 (606)
T ss_dssp             SCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             CcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence            56666666666666544 34666777777777777766544 3456677777777777776 334556677777777777


Q ss_pred             ccccccccc--CChhhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCC
Q 037045          340 RSSCSLLLQ--LPAEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGN  395 (424)
Q Consensus       340 ~~~~~~~~~--lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~  395 (424)
                        +++.+..  +|..++.+++|+.|++++|.++.+ |..+..+++|++|++++|.+.+.
T Consensus       456 --~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  512 (606)
T 3vq2_A          456 --AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL  512 (606)
T ss_dssp             --TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE
T ss_pred             --CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCc
Confidence              5555543  466666777777777777776644 33466777777777777765443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.40  E-value=1.4e-12  Score=111.55  Aligned_cols=129  Identities=17%  Similarity=0.282  Sum_probs=109.4

Q ss_pred             eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChH-HhcccCCCcEEEccCCCCCcC-Chhhhcccccceeeecccc
Q 037045          266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTS-FFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFLRSSC  343 (424)
Q Consensus       266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l~~~~  343 (424)
                      +.++++++.++.+|... ..+|+.|++++|.++.+++. .+..+++|++|++++|.+..+ |..+..+++|++|++  +.
T Consensus        11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L--s~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL--GE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC--CS
T ss_pred             CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC--CC
Confidence            67899999998887532 23899999999999988764 477899999999999999665 678999999999999  88


Q ss_pred             cccccCCh-hhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCCcc
Q 037045          344 SLLLQLPA-EIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGNHT  397 (424)
Q Consensus       344 ~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~~~  397 (424)
                      +.+..++. .+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+.+.-+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            88887765 588899999999999998865 6568999999999999999876644

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.40  E-value=1.3e-12  Score=130.43  Aligned_cols=147  Identities=19%  Similarity=0.174  Sum_probs=96.0

Q ss_pred             cceeEEEeeccCCCC-C----CCCcCcccccEEEccCCCCCCCCh--HHhcccCCCcEEEccCCCCCcCChhhhcccccc
Q 037045          263 AHTKRLSLFGFPSST-L----PDMPNCCEILTLILEGKRLEKLPT--SFFDYMCHLQLLDLHETNIGCLPPSISRLINLN  335 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~-~----~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~  335 (424)
                      ++|+.|++++|.+.. .    .....+++|+.|++++|.++.++.  ..+..+++|++|++++|.+..+|..+..+++|+
T Consensus       334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~  413 (549)
T 2z81_A          334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR  413 (549)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCC
T ss_pred             ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccccc
Confidence            566777777776664 1    123556677777777777766543  335666777777777777766666666666777


Q ss_pred             eeeecccccccccCChhh------------------hccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcc
Q 037045          336 ALFLRSSCSLLLQLPAEI------------------GRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHT  397 (424)
Q Consensus       336 ~l~l~~~~~~~~~lp~~~------------------~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~  397 (424)
                      +|++  +++.+..+|..+                  +.+++|+.|++++|+++.+|. ...+++|++|++++|.+.+.. 
T Consensus       414 ~L~L--s~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~-  489 (549)
T 2z81_A          414 FLNL--SSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVP-  489 (549)
T ss_dssp             EEEC--TTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCC-
T ss_pred             EEEC--CCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcC-
Confidence            7776  555555544332                  256677777777777777775 456777777777777655432 


Q ss_pred             cCCCCCCCCcChhhhhccccCceeecC
Q 037045          398 HADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       398 ~~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                                 ...++.+++|++|+|+
T Consensus       490 -----------~~~~~~l~~L~~L~l~  505 (549)
T 2z81_A          490 -----------DGIFDRLTSLQKIWLH  505 (549)
T ss_dssp             -----------TTGGGGCTTCCEEECC
T ss_pred             -----------HHHHhcCcccCEEEec
Confidence                       2257888888888874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.40  E-value=2.5e-12  Score=110.04  Aligned_cols=125  Identities=22%  Similarity=0.320  Sum_probs=108.5

Q ss_pred             eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeeccccc
Q 037045          266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRSSCS  344 (424)
Q Consensus       266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~~~~  344 (424)
                      +.++++++.++.+|.. -.++|+.|++++|.++.++.. +..+++|++|++++|.+..++ ..|..+++|++|++  +++
T Consensus        13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L--s~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL--SYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC--CSS
T ss_pred             CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC--CCC
Confidence            5688899999988753 236899999999999988854 888999999999999997775 56899999999999  888


Q ss_pred             ccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCC
Q 037045          345 LLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVG  394 (424)
Q Consensus       345 ~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~  394 (424)
                      .+..++. .+..+++|+.|++++|.++.+|.. +..+++|++|++++|++.+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            8888865 688999999999999999998876 8899999999999998754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.40  E-value=3.8e-13  Score=124.63  Aligned_cols=145  Identities=15%  Similarity=0.131  Sum_probs=117.3

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhh-hcccccceeeec
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSI-SRLINLNALFLR  340 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~-~~l~~L~~l~l~  340 (424)
                      ++++.|++++|.+..++. ..+++|+.|++++|.++..++..+..+++|++|++++|.+... |..+ ..+++|++|++ 
T Consensus        99 ~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L-  176 (317)
T 3o53_A           99 PSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL-  176 (317)
T ss_dssp             TTCCEEECCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC-
T ss_pred             CCcCEEECCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC-
Confidence            677888888888776442 3478899999999999988776678899999999999999665 4445 47899999999 


Q ss_pred             ccccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCce
Q 037045          341 SSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEE  420 (424)
Q Consensus       341 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  420 (424)
                       +++.+..+|.. ..+++|+.|++++|.++.+|..+..+++|++|++++|.+.+             ....+..+++|++
T Consensus       177 -~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-------------l~~~~~~l~~L~~  241 (317)
T 3o53_A          177 -QYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-------------IEKALRFSQNLEH  241 (317)
T ss_dssp             -TTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-------------ECTTCCCCTTCCE
T ss_pred             -CCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc-------------hhhHhhcCCCCCE
Confidence             88888887653 35899999999999999998889999999999999997652             2235677788888


Q ss_pred             eecC
Q 037045          421 LIIE  424 (424)
Q Consensus       421 L~l~  424 (424)
                      |+++
T Consensus       242 L~l~  245 (317)
T 3o53_A          242 FDLR  245 (317)
T ss_dssp             EECT
T ss_pred             EEcc
Confidence            8774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.40  E-value=2.5e-12  Score=119.79  Aligned_cols=127  Identities=17%  Similarity=0.278  Sum_probs=97.5

Q ss_pred             cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeec
Q 037045          263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLR  340 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~  340 (424)
                      ++++.|++++|.++.++.  +..+++|++|++++|.++.+.+..+..+++|++|++++|.+..+|..+.  ++|++|++ 
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l-  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRV-  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEEC-
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEEC-
Confidence            678888888888887543  5778888888888888887755557778888888888888877776553  67888888 


Q ss_pred             ccccccccCCh-hhhccCCCCEEEecCCcCc---ccchhhhcCCCCCEeeeccccCC
Q 037045          341 SSCSLLLQLPA-EIGRLQKLEILDVSHTKVQ---CLPSEIGQLIELKYLRVSRVENV  393 (424)
Q Consensus       341 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~l~l~~n~~~  393 (424)
                       .++.+..++. .+..+++|+.|++++|.+.   ..|..+..+++|++|++++|.+.
T Consensus       129 -~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          129 -HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             -CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             -CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence             7777776665 4778888888888888765   33555788888888888888754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.40  E-value=5.5e-13  Score=123.29  Aligned_cols=144  Identities=18%  Similarity=0.101  Sum_probs=71.9

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCC---ChHH-hcccCCCcEEEccCCCCCcCC---h-hhhccc
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKL---PTSF-FDYMCHLQLLDLHETNIGCLP---P-SISRLI  332 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~---~~~~-~~~~~~L~~L~l~~~~~~~~p---~-~~~~l~  332 (424)
                      ++|++|++++|.+..++  .+..+++|+.|++++|.+.+.   +... +..+++|++|++++|.+..++   . .+..++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            45555555555555433  234555555555555554321   1110 134455555555555554222   1 123445


Q ss_pred             ccceeeecccccccccCC--hhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChh
Q 037045          333 NLNALFLRSSCSLLLQLP--AEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLN  410 (424)
Q Consensus       333 ~L~~l~l~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~  410 (424)
                      +|++|++  +.+.+...+  ..+..+++|+.|++++|.++.+|..+.  ++|++|++++|.+.              .++
T Consensus       229 ~L~~L~L--s~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~--------------~~p  290 (312)
T 1wwl_A          229 QLQGLDL--SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD--------------RNP  290 (312)
T ss_dssp             CCSEEEC--TTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCC--------------SCC
T ss_pred             CCCEEEC--CCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCC--------------CCh
Confidence            5555555  444444332  223344555555555555555554433  45555555555432              224


Q ss_pred             hhhccccCceeecC
Q 037045          411 IISKLRLLEELIIE  424 (424)
Q Consensus       411 ~l~~l~~L~~L~l~  424 (424)
                      .+..+++|++|+++
T Consensus       291 ~~~~l~~L~~L~L~  304 (312)
T 1wwl_A          291 SPDELPQVGNLSLK  304 (312)
T ss_dssp             CTTTSCEEEEEECT
T ss_pred             hHhhCCCCCEEecc
Confidence            47888999999875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.39  E-value=1.3e-12  Score=127.41  Aligned_cols=133  Identities=17%  Similarity=0.167  Sum_probs=112.4

Q ss_pred             cceeEEEeeccCCCCC-C-CCcCcccccEEEccCCCCC-CCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceee
Q 037045          263 AHTKRLSLFGFPSSTL-P-DMPNCCEILTLILEGKRLE-KLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALF  338 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~  338 (424)
                      +++++|++++|.++.+ | .+..+++|++|++++|.+. .+++..+..+++|++|++++|.+... |..++.+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            7899999999999984 3 4689999999999999987 56666688899999999999999554 77899999999999


Q ss_pred             eccccccccc-CChh--hhccCCCCEEEecCCcCccc-chh-hhcCCCCCEeeeccccCCCCcc
Q 037045          339 LRSSCSLLLQ-LPAE--IGRLQKLEILDVSHTKVQCL-PSE-IGQLIELKYLRVSRVENVGNHT  397 (424)
Q Consensus       339 l~~~~~~~~~-lp~~--~~~l~~L~~L~l~~~~i~~l-p~~-i~~l~~L~~l~l~~n~~~~~~~  397 (424)
                      +  .++.+.. .|..  ++.+++|+.|++++|.++.+ |.. +.++++|++|++++|.+.+..+
T Consensus       110 L--~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  171 (455)
T 3v47_A          110 L--TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE  171 (455)
T ss_dssp             C--TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred             C--CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence            9  7777764 4544  88899999999999998866 555 8899999999999998866544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.39  E-value=4.5e-13  Score=123.75  Aligned_cols=144  Identities=17%  Similarity=0.112  Sum_probs=109.3

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCC---CC-hHHhcccCCCcEEEccCCCCCcCChh----hhccc
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEK---LP-TSFFDYMCHLQLLDLHETNIGCLPPS----ISRLI  332 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~---~~-~~~~~~~~~L~~L~l~~~~~~~~p~~----~~~l~  332 (424)
                      ++|++|++++|.+...+  .+..+++|+.|++++|.+.+   .+ ..++..+++|++|++++|.+..+|..    +..++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            78899999999888754  34688889999999988763   22 12235678899999999988665542    46778


Q ss_pred             ccceeeecccccccccC-Chhhhcc---CCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcC
Q 037045          333 NLNALFLRSSCSLLLQL-PAEIGRL---QKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMIS  408 (424)
Q Consensus       333 ~L~~l~l~~~~~~~~~l-p~~~~~l---~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~  408 (424)
                      +|++|++  +++.+... |..++.+   ++|+.|++++|+++.+|..+.  ++|++|++++|.+.+              
T Consensus       225 ~L~~L~L--s~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~--------------  286 (310)
T 4glp_A          225 QPHSLDL--SHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR--------------  286 (310)
T ss_dssp             CCSSEEC--TTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS--------------
T ss_pred             CCCEEEC--CCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC--------------
Confidence            8999999  77777765 7777666   689999999999888887664  789999999987643              


Q ss_pred             hhhhhccccCceeecC
Q 037045          409 LNIISKLRLLEELIIE  424 (424)
Q Consensus       409 ~~~l~~l~~L~~L~l~  424 (424)
                      ++.+..+++|++|+|+
T Consensus       287 ~~~~~~l~~L~~L~L~  302 (310)
T 4glp_A          287 APQPDELPEVDNLTLD  302 (310)
T ss_dssp             CCCTTSCCCCSCEECS
T ss_pred             CchhhhCCCccEEECc
Confidence            2335778899999875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.39  E-value=5.6e-13  Score=136.98  Aligned_cols=133  Identities=18%  Similarity=0.259  Sum_probs=94.4

Q ss_pred             cceeEEEeeccCCCCCC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecc
Q 037045          263 AHTKRLSLFGFPSSTLP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRS  341 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~  341 (424)
                      ..|+.|++++|.+..+| ....+++|+.|++++|.++.+|.. +..+++|++|++++|.+..+|..++.+++|++|++  
T Consensus       224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L--  300 (727)
T 4b8c_D          224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF--  300 (727)
T ss_dssp             CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEEC--
T ss_pred             CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEEC--
Confidence            66777778777777765 346677777888887777777655 56777788888887777777777777777888877  


Q ss_pred             cccccccCChhhhccCCCCEEEecCCcCc-ccchhhhcCC-CCCEeeeccccCCCCccc
Q 037045          342 SCSLLLQLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLI-ELKYLRVSRVENVGNHTH  398 (424)
Q Consensus       342 ~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~~l~l~~n~~~~~~~~  398 (424)
                      ++|.+..+|..++.+++|+.|++++|.++ .+|..+..+. .+..+++++|.+.+.+|.
T Consensus       301 ~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          301 FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             CSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             CCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            66777777777777777888888777776 3444454432 223456777777776665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.38  E-value=2.3e-12  Score=129.06  Aligned_cols=126  Identities=20%  Similarity=0.221  Sum_probs=106.0

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeeecc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFLRS  341 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l~~  341 (424)
                      ...++++++++.++.+|... .++|+.|++++|.++++++..+..+++|++|++++|.+..+ |..+..+++|++|++  
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L--  107 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV--  107 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC--
T ss_pred             CCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC--
Confidence            34488999999999877532 27899999999999998877788899999999999999665 567899999999999  


Q ss_pred             cccccccCChhhhccCCCCEEEecCCcCcccc--hhhhcCCCCCEeeeccccCC
Q 037045          342 SCSLLLQLPAEIGRLQKLEILDVSHTKVQCLP--SEIGQLIELKYLRVSRVENV  393 (424)
Q Consensus       342 ~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~l~l~~n~~~  393 (424)
                      +++.+..+|..  .+++|+.|++++|.++.+|  ..++++++|++|++++|.+.
T Consensus       108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence            88888888876  7899999999999988654  67899999999999998764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.37  E-value=3.1e-12  Score=127.56  Aligned_cols=121  Identities=17%  Similarity=0.178  Sum_probs=109.5

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ..++.|++++|.++.+|.+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+..+| .++.+++|++|++  +
T Consensus       441 ~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L--s  516 (567)
T 1dce_A          441 ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLL--C  516 (567)
T ss_dssp             TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC--C
T ss_pred             cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC--C
Confidence            56999999999999999899999999999999999998876 889999999999999998887 8999999999999  8


Q ss_pred             ccccccC--ChhhhccCCCCEEEecCCcCcccchh----hhcCCCCCEeee
Q 037045          343 CSLLLQL--PAEIGRLQKLEILDVSHTKVQCLPSE----IGQLIELKYLRV  387 (424)
Q Consensus       343 ~~~~~~l--p~~~~~l~~L~~L~l~~~~i~~lp~~----i~~l~~L~~l~l  387 (424)
                      +|.+..+  |..++.+++|+.|++++|.++.+|+.    +..+++|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            8888887  88999999999999999999987654    345889998864

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.37  E-value=2.3e-12  Score=120.20  Aligned_cols=146  Identities=16%  Similarity=0.275  Sum_probs=84.7

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCC---cCChhhhcc--------
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIG---CLPPSISRL--------  331 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~---~~p~~~~~l--------  331 (424)
                      ++|++|++++|.+..+|.... ++|+.|++++|.++.++...+..+++|+.|++++|.+.   ..|..+..+        
T Consensus       102 ~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~  180 (332)
T 2ft3_A          102 RKLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS  180 (332)
T ss_dssp             TTCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCC
T ss_pred             CCCCEEECCCCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECc
Confidence            566666666666665543322 56666666666666666555566666666666666552   223333333        


Q ss_pred             ------------cccceeeecccccccccCC-hhhhccCCCCEEEecCCcCcccch-hhhcCCCCCEeeeccccCCCCcc
Q 037045          332 ------------INLNALFLRSSCSLLLQLP-AEIGRLQKLEILDVSHTKVQCLPS-EIGQLIELKYLRVSRVENVGNHT  397 (424)
Q Consensus       332 ------------~~L~~l~l~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~l~l~~n~~~~~~~  397 (424)
                                  ++|++|++  +.+.+..++ ..+..+++|+.|++++|.++.++. .+..+++|++|++++|.+.    
T Consensus       181 ~n~l~~l~~~~~~~L~~L~l--~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~----  254 (332)
T 2ft3_A          181 EAKLTGIPKDLPETLNELHL--DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS----  254 (332)
T ss_dssp             SSBCSSCCSSSCSSCSCCBC--CSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC----
T ss_pred             CCCCCccCccccCCCCEEEC--CCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe----
Confidence                        34444555  444444443 345566666666666666665543 3666666666666666543    


Q ss_pred             cCCCCCCCCcChhhhhccccCceeecC
Q 037045          398 HADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       398 ~~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                               .....++.+++|++|+++
T Consensus       255 ---------~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          255 ---------RVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             ---------BCCTTGGGCTTCCEEECC
T ss_pred             ---------ecChhhhcCccCCEEECC
Confidence                     233357888888888874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.37  E-value=4.9e-12  Score=123.64  Aligned_cols=155  Identities=19%  Similarity=0.230  Sum_probs=116.6

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++|+.|++++|.+...+....+++|+.|++++|.++.++.  +..+++|+.|++++|.+...++ +..+++|+.|++  .
T Consensus       199 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l--~  273 (466)
T 1o6v_A          199 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKL--G  273 (466)
T ss_dssp             TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEEC--C
T ss_pred             CCCCEEEecCCcccccccccccCCCCEEECCCCCcccchh--hhcCCCCCEEECCCCccccchh-hhcCCCCCEEEC--C
Confidence            6778888888887776656777888888888888877653  6678888888888888866655 788888888888  7


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCccc--------CCCCCCCCcChhhhhc
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTH--------ADAGSGEMISLNIISK  414 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~--------~~~~~~~~~~~~~l~~  414 (424)
                      ++.+..+|. +..+++|+.|++++|.++.+|. +..+++|+.|++++|.+.+..+.        .+.+......+..++.
T Consensus       274 ~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~  351 (466)
T 1o6v_A          274 ANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLAN  351 (466)
T ss_dssp             SSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTT
T ss_pred             CCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhcc
Confidence            777777766 7788899999999988887765 78889999999999987665442        1112223344466777


Q ss_pred             cccCceeecC
Q 037045          415 LRLLEELIIE  424 (424)
Q Consensus       415 l~~L~~L~l~  424 (424)
                      +++|++|+++
T Consensus       352 l~~L~~L~l~  361 (466)
T 1o6v_A          352 LTNINWLSAG  361 (466)
T ss_dssp             CTTCCEEECC
T ss_pred             CCCCCEEeCC
Confidence            7778777764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.37  E-value=1.9e-12  Score=110.73  Aligned_cols=121  Identities=20%  Similarity=0.248  Sum_probs=103.5

Q ss_pred             ccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh--hhcccccceeeecccccccccC-ChhhhccCCCCEEE
Q 037045          287 ILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS--ISRLINLNALFLRSSCSLLLQL-PAEIGRLQKLEILD  363 (424)
Q Consensus       287 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~--~~~l~~L~~l~l~~~~~~~~~l-p~~~~~l~~L~~L~  363 (424)
                      -+.+++++|.++.+|...   ...++.|++++|.+..+++.  +..+++|++|++  +++.+..+ |..+..+++|+.|+
T Consensus        10 ~~~l~~s~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L--s~N~l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLEL--KRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEEC--CSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCEEEcCCCCcCcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEEC--CCCCCCCcCHhHcCCcccCCEEE
Confidence            488999999999998753   34899999999999887754  899999999999  88888877 67899999999999


Q ss_pred             ecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045          364 VSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       364 l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                      +++|.++.+|.. +..+++|++|++++|.+.+..|            ..++.+++|++|+++
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP------------GSFEHLNSLTSLNLA  134 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT------------TSSTTCTTCCEEECT
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH------------HHhhcCCCCCEEEeC
Confidence            999999977665 8999999999999998765433            367788899999874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.37  E-value=4.5e-12  Score=129.97  Aligned_cols=129  Identities=22%  Similarity=0.195  Sum_probs=112.9

Q ss_pred             eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeeeccccc
Q 037045          266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFLRSSCS  344 (424)
Q Consensus       266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l~~~~~  344 (424)
                      +.++.+++.++.+|... .++++.|++++|.++++++..+..+++|++|++++|.+..+ |..++.+++|++|++  +.+
T Consensus         7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--~~n   83 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL--QHN   83 (680)
T ss_dssp             SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEEC--CSS
T ss_pred             CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEEC--CCC
Confidence            56889999999887532 27899999999999999988789999999999999999555 677899999999999  888


Q ss_pred             ccccCCh-hhhccCCCCEEEecCCcCcccch-hhhcCCCCCEeeeccccCCCCcc
Q 037045          345 LLLQLPA-EIGRLQKLEILDVSHTKVQCLPS-EIGQLIELKYLRVSRVENVGNHT  397 (424)
Q Consensus       345 ~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~l~l~~n~~~~~~~  397 (424)
                      .+..+|. .++.+++|+.|++++|.++.+|. .++++++|++|++++|.+.+..+
T Consensus        84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  138 (680)
T 1ziw_A           84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL  138 (680)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC
T ss_pred             ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc
Confidence            8989987 59999999999999999998864 59999999999999998766543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.36  E-value=4.1e-12  Score=125.98  Aligned_cols=146  Identities=20%  Similarity=0.269  Sum_probs=113.4

Q ss_pred             cceeEEEeeccCCCC-C-CCCcCcccccEEEccCCCCCCCCh--HHhcccCCCcEEEccCCCCCc-CChh-hhcccccce
Q 037045          263 AHTKRLSLFGFPSST-L-PDMPNCCEILTLILEGKRLEKLPT--SFFDYMCHLQLLDLHETNIGC-LPPS-ISRLINLNA  336 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~-~-~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~~~~~~-~p~~-~~~l~~L~~  336 (424)
                      ++++.|++++|.+.. . ..+..+++|+.|++++|.+++++.  ..+..+++|++|++++|.+.. +|.. +..+++|++
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~  403 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS  403 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred             CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence            788889999988887 3 345788889999999998886443  447788899999999998855 7754 777888999


Q ss_pred             eeeccccccc-ccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcc
Q 037045          337 LFLRSSCSLL-LQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKL  415 (424)
Q Consensus       337 l~l~~~~~~~-~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l  415 (424)
                      |++  +++.+ +..|..+.  ++|+.|++++|.++.+|..+..+++|++|++++|.+.. +|.           ..+..+
T Consensus       404 L~L--s~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~-----------~~~~~l  467 (520)
T 2z7x_B          404 LNM--SSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS-VPD-----------GIFDRL  467 (520)
T ss_dssp             EEC--CSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CCT-----------TTTTTC
T ss_pred             EEC--cCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc-cCH-----------HHhccC
Confidence            998  66666 45555443  68999999999999999888899999999999997652 222           137788


Q ss_pred             ccCceeecC
Q 037045          416 RLLEELIIE  424 (424)
Q Consensus       416 ~~L~~L~l~  424 (424)
                      ++|++|+++
T Consensus       468 ~~L~~L~l~  476 (520)
T 2z7x_B          468 TSLQKIWLH  476 (520)
T ss_dssp             TTCCEEECC
T ss_pred             CcccEEECc
Confidence            899998875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.35  E-value=3.2e-12  Score=134.17  Aligned_cols=131  Identities=24%  Similarity=0.254  Sum_probs=106.4

Q ss_pred             cceeEEEeeccCCCCC--CCCcCcccccEEEccCCCCC-CCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceee
Q 037045          263 AHTKRLSLFGFPSSTL--PDMPNCCEILTLILEGKRLE-KLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALF  338 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~  338 (424)
                      ++++.|++++|.++.+  ..+..+++|++|++++|... .+++..+..+++|++|++++|.+..+ |..++.+++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            7899999999999874  35688999999999988544 56566688899999999999998554 77899999999999


Q ss_pred             eccccccccc-CChh--hhccCCCCEEEecCCcCccc--chhhhcCCCCCEeeeccccCCCC
Q 037045          339 LRSSCSLLLQ-LPAE--IGRLQKLEILDVSHTKVQCL--PSEIGQLIELKYLRVSRVENVGN  395 (424)
Q Consensus       339 l~~~~~~~~~-lp~~--~~~l~~L~~L~l~~~~i~~l--p~~i~~l~~L~~l~l~~n~~~~~  395 (424)
                      +  +.+.+.. +|..  ++.+++|+.|++++|.++.+  +..++++++|++|++++|.+.+.
T Consensus       104 L--s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A          104 L--YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             C--TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             C--cCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            9  6666654 5654  88899999999999998755  34589999999999999987554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.35  E-value=1.8e-12  Score=131.07  Aligned_cols=129  Identities=15%  Similarity=0.069  Sum_probs=97.2

Q ss_pred             cceeEEEeeccCCCCC-C-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTL-P-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l  339 (424)
                      ++++.|++++|.++.+ | .+..+++|++|++++|.++...+..+..+++|++|++++|.+..+ |..++.+++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            5778888888888874 3 457788888888888888877666577888888888888887444 567788888888888


Q ss_pred             cccccccccC-ChhhhccCCCCEEEecCCcCcccc-hhhhcCCCCCEeeeccccCC
Q 037045          340 RSSCSLLLQL-PAEIGRLQKLEILDVSHTKVQCLP-SEIGQLIELKYLRVSRVENV  393 (424)
Q Consensus       340 ~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~l~l~~n~~~  393 (424)
                        ..+.+..+ |..++.+++|+.|++++|.++.++ +.+..+++|++|++++|.+.
T Consensus       113 --~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  166 (606)
T 3t6q_A          113 --IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH  166 (606)
T ss_dssp             --TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred             --cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence              77777766 456778888888888888877652 23445788888888888654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.35  E-value=4.8e-13  Score=131.37  Aligned_cols=128  Identities=14%  Similarity=0.053  Sum_probs=113.4

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhc-ccCCCcEEEccCCCCCcCChhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFD-YMCHLQLLDLHETNIGCLPPSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l  339 (424)
                      ++|+.|++++|.++.++  .+..+++|+.|++++|.+++.++..+. .+++|+.|++++|.+..+|+ ...+++|++|++
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L  198 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDL  198 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEEC
Confidence            78999999999999853  457899999999999999986554454 78999999999999977654 446999999999


Q ss_pred             cccccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045          340 RSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV  393 (424)
Q Consensus       340 ~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~  393 (424)
                        +++.+..+|+.++.+++|+.|++++|.++.+|..+..+++|+.|++++|.+.
T Consensus       199 --s~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          199 --SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             --CSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             --CCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence              8999999998899999999999999999999998999999999999999865

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.35  E-value=6.8e-14  Score=120.43  Aligned_cols=169  Identities=18%  Similarity=0.230  Sum_probs=121.7

Q ss_pred             hHHHHhhhhhcchhhhhhhccccceeEEEeecc--CCCCCC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEcc
Q 037045          241 QDYIIDGWAAQKFLASFNKIGDAHTKRLSLFGF--PSSTLP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLH  317 (424)
Q Consensus       241 ~~~Li~~w~~~~~~~~~~d~~~~~l~~L~l~~~--~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  317 (424)
                      ....+..|.....+      ..-.++.+.+.+.  .++.+| .+..+++|+.|++++|.++.++  .+..+++|++|+++
T Consensus         7 ~~~~~~~~~~~~~l------~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~   78 (198)
T 1ds9_A            7 IKDAIRIFEERKSV------VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLG   78 (198)
T ss_dssp             HHHHHHHHHHTTCC------CCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHhcccc------cCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECC
Confidence            34455555443332      2245566666554  334444 3577889999999999999987  37788999999999


Q ss_pred             CCCCCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEecCCcCcccch--hhhcCCCCCEeeeccccCCCC
Q 037045          318 ETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPS--EIGQLIELKYLRVSRVENVGN  395 (424)
Q Consensus       318 ~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~l~l~~n~~~~~  395 (424)
                      +|.+..+|..+..+++|++|++  +++.+..+| .++.+++|+.|++++|.++.+|.  .+..+++|++|++++|.+.+.
T Consensus        79 ~n~l~~l~~~~~~~~~L~~L~L--~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           79 RNLIKKIENLDAVADTLEELWI--SYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEECSCSSHHHHHHHCSEEEE--EEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CCCcccccchhhcCCcCCEEEC--cCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            9998888888888899999999  788888887 68888999999999999887765  588999999999999976433


Q ss_pred             cccCCCCCCCCcChhhhhccccCceee
Q 037045          396 HTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       396 ~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      .|...  .........+..+++|++|+
T Consensus       156 ~~~~~--~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          156 YKENN--ATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHTTT--THHHHHHHHHHHCSSCSEEC
T ss_pred             ccccc--chHHHHHHHHHhCCCcEEEC
Confidence            22100  00001122377888888876

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.35  E-value=4.8e-11  Score=113.53  Aligned_cols=218  Identities=12%  Similarity=0.043  Sum_probs=138.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccC-----CC-CceEEEEEeccCC-CHHHHHHHHHHHhcccc---cccChhHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGES-----RR-FDIIFWENINTDG-NIRDIQEIILERLKVNA---KELNNDLRADI   71 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~-----~~-f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~~   71 (424)
                      +.+.|+|++|+|||++|+.+++.....     .. ...++|+++.... +...++..++..+....   ...+.......
T Consensus        46 ~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  125 (384)
T 2qby_B           46 FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDK  125 (384)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence            468999999999999999999876321     11 3357888887777 88889999888884322   23334556677


Q ss_pred             HHHHhccCcEEEEEcCCCCcch---hhh-h-ccCCCCCCcEEEEEecchhh----hc----ccCceEEecCCCHHHHHHH
Q 037045           72 ISKELNDRSYVLFLDGVSSEIN---FKE-I-GMHDDHGRGKVVFACRSREF----CW----QADGVIHVQQLCQREAKKL  138 (424)
Q Consensus        72 l~~~l~~~~~LlvlD~~~~~~~---~~~-~-~~~~~~~~~~iiittr~~~~----~~----~~~~~~~l~~l~~~~~~~l  138 (424)
                      +.+.+..++.+||||+++....   .+. + .+.....+..+|+||+....    ..    .....+.+++++.++..++
T Consensus       126 l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~i  205 (384)
T 2qby_B          126 IKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFI  205 (384)
T ss_dssp             HHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHH
T ss_pred             HHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHH
Confidence            7777777767999999987532   122 1 11111267788888887532    11    2234899999999999999


Q ss_pred             HHHHhcccCCCCccHHHHHHHHHHhcC---CchH-HHHHHHHHH--h---CCcchHHHHHHHHHhhhcCcccccchhhhh
Q 037045          139 FWEVVGVHLKKYPDIELVADSIVKECG---GMPY-MLKLIGKEL--A---NQSEVAIWRATADELRLTSSEEKKELEEVD  209 (424)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~I~~~~~---g~Pl-ai~~~a~~l--~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~  209 (424)
                      +...+..........++....+++.++   |.|. ++..+-...  .   ..-+.+.+...++....             
T Consensus       206 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~-------------  272 (384)
T 2qby_B          206 LSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ-------------  272 (384)
T ss_dssp             HHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH-------------
T ss_pred             HHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc-------------
Confidence            998864311111222345667888887   8886 433333322  1   11234444444433321             


Q ss_pred             HHHhhhhccCCcchHhHHhhhhh
Q 037045          210 RFFTLVYKNLSLEQQHCLLGWAI  232 (424)
Q Consensus       210 ~~l~~s~~~L~~~~k~~~~~la~  232 (424)
                      ..+..++..|++..+..+..++.
T Consensus       273 ~~~~~~~~~l~~~~~~~l~al~~  295 (384)
T 2qby_B          273 ERLIEAVKALPFHYKLALRSLIE  295 (384)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHT
T ss_pred             chHHHHHHcCCHHHHHHHHHHHH
Confidence            23445567777777777776665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.35  E-value=1.2e-12  Score=131.18  Aligned_cols=148  Identities=20%  Similarity=0.249  Sum_probs=104.0

Q ss_pred             cceeEEEeeccCCCCCC-CCcCcccccEEEccCCCCCCCCh-HHhcccCCCcEEEccCCCC-CcCChhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLP-DMPNCCEILTLILEGKRLEKLPT-SFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~l~l  339 (424)
                      ++|+.|++++|.+..++ .+..+++|+.|++++|.++..++ ..+..+++|++|++++|.+ ...|..+..+++|++|++
T Consensus       373 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  452 (570)
T 2z63_A          373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  452 (570)
T ss_dssp             SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             CccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence            56666666666666533 24667777777777777776543 3366777888888888877 445566778888888888


Q ss_pred             cccccccc--cCChhhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccc
Q 037045          340 RSSCSLLL--QLPAEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLR  416 (424)
Q Consensus       340 ~~~~~~~~--~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~  416 (424)
                        .++.+.  .+|..+..+++|+.|++++|.++.+ |..+.++++|++|++++|.+.+..            ...++.++
T Consensus       453 --~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------~~~~~~l~  518 (570)
T 2z63_A          453 --AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP------------DGIFDRLT  518 (570)
T ss_dssp             --TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC------------TTTTTTCT
T ss_pred             --cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCC------------HHHhhccc
Confidence              556554  5777778888888888888887755 556788888888888888765431            22567788


Q ss_pred             cCceeecC
Q 037045          417 LLEELIIE  424 (424)
Q Consensus       417 ~L~~L~l~  424 (424)
                      +|++|+++
T Consensus       519 ~L~~L~l~  526 (570)
T 2z63_A          519 SLQKIWLH  526 (570)
T ss_dssp             TCCEEECC
T ss_pred             CCcEEEec
Confidence            88888764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.34  E-value=3e-12  Score=124.77  Aligned_cols=133  Identities=18%  Similarity=0.201  Sum_probs=108.0

Q ss_pred             cceeEEEeeccCCCCC-C-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTL-P-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l  339 (424)
                      ++++.|++++|.+... | .+..+++|+.|++++|.+++.++..+..+++|++|++++|.+..+ |..+..+++|++|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            6788888888888873 3 347788899999999998887766678888899999999888655 456788899999999


Q ss_pred             cccccccccC-ChhhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcc
Q 037045          340 RSSCSLLLQL-PAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHT  397 (424)
Q Consensus       340 ~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~  397 (424)
                        +++.+..+ |..+..+++|+.|++++|.++.+|.. +..+++|++|++++|++.+..|
T Consensus       355 --s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          355 --SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             --CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             --CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence              77777765 66788888999999999888888765 6788889999999998877655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.34  E-value=1.9e-12  Score=132.97  Aligned_cols=130  Identities=23%  Similarity=0.176  Sum_probs=101.6

Q ss_pred             eeEEEeeccCCCCCC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccc
Q 037045          265 TKRLSLFGFPSSTLP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSC  343 (424)
Q Consensus       265 l~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~  343 (424)
                      +..++++.|.+..++ .+..+.+|+.|++++|.+..++... ..+++|++|++++|.+..+|..++.+++|++|++  ++
T Consensus       203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L--s~  279 (727)
T 4b8c_D          203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANI-FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDL--SH  279 (727)
T ss_dssp             -------------------CCCCCCEEECTTSCCSCCCGGG-GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEEC--TT
T ss_pred             ccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhh-cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeC--cC
Confidence            333444444444333 3477889999999999999988874 4789999999999999999999999999999999  88


Q ss_pred             cccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcc
Q 037045          344 SLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHT  397 (424)
Q Consensus       344 ~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~  397 (424)
                      |.+..+|..++.+++|+.|++++|.++.+|..|+++++|++|++++|.+.+..|
T Consensus       280 N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          280 NRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             SCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred             CcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence            888899999999999999999999999999889999999999999998766533

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.34  E-value=6.3e-12  Score=124.89  Aligned_cols=14  Identities=29%  Similarity=0.226  Sum_probs=7.7

Q ss_pred             hhhccccCceeecC
Q 037045          411 IISKLRLLEELIIE  424 (424)
Q Consensus       411 ~l~~l~~L~~L~l~  424 (424)
                      .+.++++|++|+|+
T Consensus       225 ~l~~l~~L~~L~L~  238 (571)
T 3cvr_A          225 NILSLDPTCTIILE  238 (571)
T ss_dssp             GGGGSCTTEEEECC
T ss_pred             HHhcCCCCCEEEee
Confidence            35556666666553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.34  E-value=3.3e-12  Score=119.12  Aligned_cols=125  Identities=17%  Similarity=0.231  Sum_probs=70.8

Q ss_pred             cceeEEEeeccCCCC---CCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhccccccee
Q 037045          263 AHTKRLSLFGFPSST---LPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNAL  337 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~---~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l  337 (424)
                      ++|+.|++++|.++.   .+. +..+ +|+.|++++|.++.+|...   .++|+.|++++|.+..++ ..+..+++|++|
T Consensus       147 ~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  222 (332)
T 2ft3_A          147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRL  222 (332)
T ss_dssp             SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCC
T ss_pred             ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            566777777766642   122 2333 5666666666666555431   245666666666654433 445566666666


Q ss_pred             eecccccccccCCh-hhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045          338 FLRSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV  393 (424)
Q Consensus       338 ~l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~  393 (424)
                      ++  +++.+..++. .+..+++|+.|++++|.++.+|..+..+++|++|++++|.+.
T Consensus       223 ~L--~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          223 GL--GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             BC--CSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC
T ss_pred             EC--CCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC
Confidence            66  5555554443 455566666666666666666655666666666666666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.34  E-value=2.6e-12  Score=118.67  Aligned_cols=131  Identities=15%  Similarity=0.070  Sum_probs=79.0

Q ss_pred             cceeEEEeeccCCCC-CC-CC--cCcccccEEEccCCCCCCCCh----HHhcccCCCcEEEccCCCCCcCC-hhhhcccc
Q 037045          263 AHTKRLSLFGFPSST-LP-DM--PNCCEILTLILEGKRLEKLPT----SFFDYMCHLQLLDLHETNIGCLP-PSISRLIN  333 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~-~~-~~--~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~  333 (424)
                      ++++.|++++|.+.. .| .+  ..+++|+.|++++|.+++..+    ..+..+++|++|++++|.+...+ ..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            557777777777765 23 22  566777777777777765322    22335667777777777774443 45667777


Q ss_pred             cceeeeccccccccc---CCh--hhhccCCCCEEEecCCcCcccchh----hhcCCCCCEeeeccccCCCC
Q 037045          334 LNALFLRSSCSLLLQ---LPA--EIGRLQKLEILDVSHTKVQCLPSE----IGQLIELKYLRVSRVENVGN  395 (424)
Q Consensus       334 L~~l~l~~~~~~~~~---lp~--~~~~l~~L~~L~l~~~~i~~lp~~----i~~l~~L~~l~l~~n~~~~~  395 (424)
                      |++|++  +++.+..   ++.  .++.+++|+.|++++|.++.+|..    +..+++|++|++++|.+.+.
T Consensus       171 L~~L~L--s~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~  239 (310)
T 4glp_A          171 LTSLDL--SDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT  239 (310)
T ss_dssp             CCEEEC--CSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred             CCEEEC--CCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence            777777  5554321   222  235666677777777766655442    35666677777777665544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.33  E-value=1.1e-11  Score=105.94  Aligned_cols=121  Identities=20%  Similarity=0.245  Sum_probs=103.9

Q ss_pred             ccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCCh-hhhccCCCCEEEec
Q 037045          287 ILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPA-EIGRLQKLEILDVS  365 (424)
Q Consensus       287 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~-~~~~l~~L~~L~l~  365 (424)
                      -+.+++++|.++.+|...   .+.++.|++++|.+..+|..+..+++|++|++  +.+.+..++. .+..+++|+.|+++
T Consensus        12 ~~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~L--s~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDL--SNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEEC--CSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEEC--CCCcCCEeCHhHccCCCCCCEEECC
Confidence            478999999999998752   46899999999999999999999999999999  8888988865 68999999999999


Q ss_pred             CCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045          366 HTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       366 ~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                      +|.++.+|.. +..+++|++|++++|.+.+..            ...+..+++|++|+++
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP------------EGAFNDLSALSHLAIG  134 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC------------TTTTTTCTTCCEEECC
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeC------------hhhhhcCccccEEEeC
Confidence            9999988764 899999999999999875321            1246778889988874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.33  E-value=1e-11  Score=120.89  Aligned_cols=120  Identities=18%  Similarity=0.136  Sum_probs=63.8

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++|+.|++++|.++.++ +..+++|+.|++++|.+++++   +..+++|++|++++|.+..++  ++.+++|++|+++ .
T Consensus        85 ~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~-~  157 (457)
T 3bz5_A           85 TNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCH-L  157 (457)
T ss_dssp             TTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECT-T
T ss_pred             CCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec--cccCCcCCEEECC-C
Confidence            45555666665555543 455555666666666555543   345555666666655554442  4455555555552 2


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV  393 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~  393 (424)
                      +..++.+  .++.+++|+.|++++|.++.+|  +..+++|+.|++++|.+.
T Consensus       158 n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          158 NKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             CSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCS
T ss_pred             CCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCC
Confidence            2233333  2445555666666655555554  455555555555555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.32  E-value=7.9e-12  Score=126.33  Aligned_cols=160  Identities=18%  Similarity=0.187  Sum_probs=104.8

Q ss_pred             cceeEEEeeccCCCCCCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcCCh-hhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPP-SISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~-~~~~l~~L~~l~l  339 (424)
                      ++|+.|++++|.++.+|. +..+++|+.|++++|.+++.++..+..+++|+.|++++|.+ ..+|. .+..+++|++|++
T Consensus       278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  357 (606)
T 3t6q_A          278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL  357 (606)
T ss_dssp             TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred             cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence            677778888777777653 46777788888888777776655567777777777777766 35553 3677777777777


Q ss_pred             cccccccccC---ChhhhccCCCCEEEecCCcCccc-chhhhcCCCCCEeeeccccCCCCcccCC-----------CCCC
Q 037045          340 RSSCSLLLQL---PAEIGRLQKLEILDVSHTKVQCL-PSEIGQLIELKYLRVSRVENVGNHTHAD-----------AGSG  404 (424)
Q Consensus       340 ~~~~~~~~~l---p~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~l~l~~n~~~~~~~~~~-----------~~~~  404 (424)
                        +.+.+...   |..++.+++|+.|++++|.+..+ |..+..+++|++|++++|.+.+..+...           .+..
T Consensus       358 --~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  435 (606)
T 3t6q_A          358 --SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS  435 (606)
T ss_dssp             --CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred             --CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence              66666544   45677777888888877776644 4457777778888887776654432210           0000


Q ss_pred             --CCcChhhhhccccCceeecC
Q 037045          405 --EMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       405 --~~~~~~~l~~l~~L~~L~l~  424 (424)
                        .......++.+++|++|+++
T Consensus       436 ~l~~~~~~~~~~l~~L~~L~L~  457 (606)
T 3t6q_A          436 LLDISSEQLFDGLPALQHLNLQ  457 (606)
T ss_dssp             CCBTTCTTTTTTCTTCCEEECT
T ss_pred             ccCCcCHHHHhCCCCCCEEECC
Confidence              11223446677777777764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.31  E-value=4.8e-12  Score=132.78  Aligned_cols=144  Identities=19%  Similarity=0.151  Sum_probs=120.4

Q ss_pred             eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcC-Chhhhcccccceeeecccc
Q 037045          266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCL-PPSISRLINLNALFLRSSC  343 (424)
Q Consensus       266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~-p~~~~~l~~L~~l~l~~~~  343 (424)
                      +..+.+++.++.+|.  -.++|+.|++++|.++.+++..+..+++|++|++++|.. ..+ |..+..+++|++|++  +.
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L--s~   82 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL--GS   82 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC--TT
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC--CC
Confidence            567888999999887  568899999999999987766689999999999999955 666 677999999999999  77


Q ss_pred             cccccC-ChhhhccCCCCEEEecCCcCcc-cchh--hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCc
Q 037045          344 SLLLQL-PAEIGRLQKLEILDVSHTKVQC-LPSE--IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLE  419 (424)
Q Consensus       344 ~~~~~l-p~~~~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  419 (424)
                      +.+..+ |..++.+++|+.|++++|.++. +|..  +.++++|++|++++|.+.+.           .....+++|++|+
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~-----------~~~~~~~~L~~L~  151 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-----------YLHPSFGKLNSLK  151 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC-----------CCCGGGGTCSSCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc-----------ccchhHhhCCCCC
Confidence            777765 7789999999999999999874 5665  89999999999999987543           1224577788888


Q ss_pred             eeecC
Q 037045          420 ELIIE  424 (424)
Q Consensus       420 ~L~l~  424 (424)
                      +|+|+
T Consensus       152 ~L~Ls  156 (844)
T 3j0a_A          152 SIDFS  156 (844)
T ss_dssp             EEEEE
T ss_pred             EEECC
Confidence            77763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.31  E-value=1.4e-11  Score=123.41  Aligned_cols=146  Identities=16%  Similarity=0.209  Sum_probs=111.4

Q ss_pred             cceeEEEeeccCCCC-CC-CCcCcccccEEEccCCCCCCCCh--HHhcccCCCcEEEccCCCCCc-CChh-hhcccccce
Q 037045          263 AHTKRLSLFGFPSST-LP-DMPNCCEILTLILEGKRLEKLPT--SFFDYMCHLQLLDLHETNIGC-LPPS-ISRLINLNA  336 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~~~~~~-~p~~-~~~l~~L~~  336 (424)
                      ++++.|++++|.+.. .| .+..+++|+.|++++|.+++++.  ..+..+++|+.|++++|.+.. +|.. +..+++|++
T Consensus       353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~  432 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV  432 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred             CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence            688888888888887 33 45788889999999988887653  336778889999999888854 6653 777888888


Q ss_pred             eeecccccccc-cCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcc
Q 037045          337 LFLRSSCSLLL-QLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKL  415 (424)
Q Consensus       337 l~l~~~~~~~~-~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l  415 (424)
                      |++  +++.+. ..|..+.  ++|+.|++++|+++.+|..+..+++|++|++++|.+.+ +|.           ..++.+
T Consensus       433 L~l--~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~-----------~~~~~l  496 (562)
T 3a79_B          433 LNL--SSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPD-----------GVFDRL  496 (562)
T ss_dssp             EEC--CSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC-CCT-----------TSTTTC
T ss_pred             EEC--CCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC-CCH-----------HHHhcC
Confidence            888  666653 4444443  68999999999999999888899999999999997652 222           027788


Q ss_pred             ccCceeecC
Q 037045          416 RLLEELIIE  424 (424)
Q Consensus       416 ~~L~~L~l~  424 (424)
                      ++|++|+++
T Consensus       497 ~~L~~L~l~  505 (562)
T 3a79_B          497 TSLQYIWLH  505 (562)
T ss_dssp             TTCCCEECC
T ss_pred             CCCCEEEec
Confidence            888888874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.30  E-value=1.6e-11  Score=119.44  Aligned_cols=148  Identities=18%  Similarity=0.236  Sum_probs=81.3

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++++.|++++|.++.+|..  +++|+.|++++|.+++++..    .++|++|++++|.+..+| .++.+++|++|++  +
T Consensus        91 ~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l--~  161 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV--D  161 (454)
T ss_dssp             TTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC--C
T ss_pred             CCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-ccCCCCCCCEEEC--C
Confidence            4566666666666655432  35566666666666554431    145666666666665555 3666666666666  5


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCccc-------CCCCCCCCcChhhhhcc
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTH-------ADAGSGEMISLNIISKL  415 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~-------~~~~~~~~~~~~~l~~l  415 (424)
                      ++.+..+|...   .+|+.|++++|.++.+| .++++++|++|++++|.+.+ +|.       -+.+......++.++.+
T Consensus       162 ~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~~lp~~~~l  236 (454)
T 1jl5_A          162 NNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILEELPELQNL  236 (454)
T ss_dssp             SSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCSSCCCCTTC
T ss_pred             CCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCCcccccCCC
Confidence            55555555432   35666666666655555 35666666666666665543 111       11111122234457778


Q ss_pred             ccCceeecC
Q 037045          416 RLLEELIIE  424 (424)
Q Consensus       416 ~~L~~L~l~  424 (424)
                      ++|++|+++
T Consensus       237 ~~L~~L~l~  245 (454)
T 1jl5_A          237 PFLTTIYAD  245 (454)
T ss_dssp             TTCCEEECC
T ss_pred             CCCCEEECC
Confidence            888888764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.29  E-value=1.7e-10  Score=109.81  Aligned_cols=172  Identities=16%  Similarity=0.107  Sum_probs=116.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCC-CceEEEEEeccCCCHHHHHHHHHHHhcccc--cccChhHHHHHHHHHhc-
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRR-FDIIFWENINTDGNIRDIQEIILERLKVNA--KELNNDLRADIISKELN-   77 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~~~l~-   77 (424)
                      +.+.|+|++|+||||+++.+++...  .. -..++|+++....+...+...++..++...  ...+..+....+.+.+. 
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~  122 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWELYK--DKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRE  122 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT--TSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHh--hhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhh
Confidence            4799999999999999999999884  33 235778888888888899999999887543  22344455555555554 


Q ss_pred             -cCcEEEEEcCCCCcc--hhhhh-ccCCC--C---CCcEEEEEecchhhhc---------ccCceEEecCCCHHHHHHHH
Q 037045           78 -DRSYVLFLDGVSSEI--NFKEI-GMHDD--H---GRGKVVFACRSREFCW---------QADGVIHVQQLCQREAKKLF  139 (424)
Q Consensus        78 -~~~~LlvlD~~~~~~--~~~~~-~~~~~--~---~~~~iiittr~~~~~~---------~~~~~~~l~~l~~~~~~~l~  139 (424)
                       +++.+||||+++...  .+..+ .....  .   .+..+|++|+......         .....+.+.+++.++..+++
T Consensus       123 ~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l  202 (389)
T 1fnn_A          123 RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDIL  202 (389)
T ss_dssp             TTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHH
T ss_pred             cCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHH
Confidence             458899999998752  23333 11111  1   4667888877653221         12347999999999999999


Q ss_pred             HHHhcccCCCCccHHHHHHHHHHhc---------CCchHHHHHHH
Q 037045          140 WEVVGVHLKKYPDIELVADSIVKEC---------GGMPYMLKLIG  175 (424)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~I~~~~---------~g~Plai~~~a  175 (424)
                      ...+..........++....+++.+         .|.|..+..+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l  247 (389)
T 1fnn_A          203 LDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDIL  247 (389)
T ss_dssp             HHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHH
T ss_pred             HHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence            8887531111223356778899998         78876554443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.27  E-value=1.1e-11  Score=123.26  Aligned_cols=122  Identities=20%  Similarity=0.235  Sum_probs=100.7

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      .+|+.|++++|.++.+|.  .+++|+.|++++|.++.+|.    .+++|+.|++++|.+..+|. ++  ++|++|++  +
T Consensus       120 ~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~L--s  188 (571)
T 3cvr_A          120 ASLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDV--S  188 (571)
T ss_dssp             TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEEC--C
T ss_pred             cCCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEEC--c
Confidence            378888888888888776  67888889999888888776    46789999999999877887 65  88999999  8


Q ss_pred             ccccccCChhhhccCCC-------CEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCccc
Q 037045          343 CSLLLQLPAEIGRLQKL-------EILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTH  398 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L-------~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~  398 (424)
                      +|.+..+|. +..  +|       +.|++++|.++.+|..+.++++|++|++++|.+.+..|.
T Consensus       189 ~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          189 TNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             SSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             CCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            888888887 554  67       999999999999999888899999999999988665443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.27  E-value=1.7e-12  Score=121.22  Aligned_cols=149  Identities=21%  Similarity=0.223  Sum_probs=95.3

Q ss_pred             cceeEEEeeccCCCC-C-CCCcCcccccEEEccCC-CCCCC-ChHHhcccCCCcEEEccCC-CCCc--CChhhhccc-cc
Q 037045          263 AHTKRLSLFGFPSST-L-PDMPNCCEILTLILEGK-RLEKL-PTSFFDYMCHLQLLDLHET-NIGC--LPPSISRLI-NL  334 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~-~-~~~~~~~~L~~L~l~~~-~l~~~-~~~~~~~~~~L~~L~l~~~-~~~~--~p~~~~~l~-~L  334 (424)
                      ++|++|++++|.+.. . ..+..+++|+.|++++| .+++. .+..+..+++|+.|++++| .+..  ++..+..++ +|
T Consensus       118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L  197 (336)
T 2ast_B          118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  197 (336)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence            677777777776653 2 23355777777777777 55531 2233556777777777777 6633  455566777 77


Q ss_pred             ceeeecccccc--c--ccCChhhhccCCCCEEEecCCc-Cc-ccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcC
Q 037045          335 NALFLRSSCSL--L--LQLPAEIGRLQKLEILDVSHTK-VQ-CLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMIS  408 (424)
Q Consensus       335 ~~l~l~~~~~~--~--~~lp~~~~~l~~L~~L~l~~~~-i~-~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~  408 (424)
                      ++|++  +++.  +  ..+|..+..+++|+.|++++|. ++ ..+..+.++++|++|++++|...           ....
T Consensus       198 ~~L~l--~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-----------~~~~  264 (336)
T 2ast_B          198 TQLNL--SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI-----------IPET  264 (336)
T ss_dssp             CEEEC--CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC-----------CGGG
T ss_pred             CEEEe--CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC-----------CHHH
Confidence            77777  4442  2  3456666677777777777776 55 44556777777777777777411           2234


Q ss_pred             hhhhhccccCceeecC
Q 037045          409 LNIISKLRLLEELIIE  424 (424)
Q Consensus       409 ~~~l~~l~~L~~L~l~  424 (424)
                      +..++++++|++|+|+
T Consensus       265 ~~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          265 LLELGEIPTLKTLQVF  280 (336)
T ss_dssp             GGGGGGCTTCCEEECT
T ss_pred             HHHHhcCCCCCEEecc
Confidence            4567888899988874

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.26  E-value=8.1e-11  Score=111.92  Aligned_cols=217  Identities=12%  Similarity=0.063  Sum_probs=133.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccC----CCCceEEEEEeccCCCHHHHHHHHHHHhcccc--cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGES----RRFDIIFWENINTDGNIRDIQEIILERLKVNA--KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~~~   75 (424)
                      +.+.|+|++|+||||+|+.+++.....    ..-...+|+++....+...+...++.+++...  ...+..+....+.+.
T Consensus        45 ~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~  124 (387)
T 2v1u_A           45 SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKR  124 (387)
T ss_dssp             CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence            358899999999999999999877321    11234788888888889999999999987644  233345555666666


Q ss_pred             hc--cCcEEEEEcCCCCcchh----hhh----ccCCC---CCCcEEEEEecchhhh---c----c--cCceEEecCCCHH
Q 037045           76 LN--DRSYVLFLDGVSSEINF----KEI----GMHDD---HGRGKVVFACRSREFC---W----Q--ADGVIHVQQLCQR  133 (424)
Q Consensus        76 l~--~~~~LlvlD~~~~~~~~----~~~----~~~~~---~~~~~iiittr~~~~~---~----~--~~~~~~l~~l~~~  133 (424)
                      +.  +++++||||+++....-    +.+    .....   ..+..+|.||+.....   .    .  ....+.+++++.+
T Consensus       125 l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~  204 (387)
T 2v1u_A          125 LSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAP  204 (387)
T ss_dssp             HTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHH
T ss_pred             HhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHH
Confidence            63  45889999999875421    222    11111   4456777777665321   1    2  2257899999999


Q ss_pred             HHHHHHHHHhcccCCCCccHHHHHHHHHHhcC---CchHHHH-HHHHHH---h--C--CcchHHHHHHHHHhhhcCcccc
Q 037045          134 EAKKLFWEVVGVHLKKYPDIELVADSIVKECG---GMPYMLK-LIGKEL---A--N--QSEVAIWRATADELRLTSSEEK  202 (424)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~---g~Plai~-~~a~~l---~--~--~~~~~~~~~~~~~l~~~~~~~~  202 (424)
                      +..+++...+..........++....+++.++   |.|..+. .+....   .  .  .-+.+.+....+....      
T Consensus       205 ~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~------  278 (387)
T 2v1u_A          205 QLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIER------  278 (387)
T ss_dssp             HHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh------
Confidence            99999998864310011122335667888887   9994333 222221   1  1  1233444444333322      


Q ss_pred             cchhhhhHHHhhhhccCCcchHhHHhhhh
Q 037045          203 KELEEVDRFFTLVYKNLSLEQQHCLLGWA  231 (424)
Q Consensus       203 ~~~~~i~~~l~~s~~~L~~~~k~~~~~la  231 (424)
                             ..+..++..|+++.+..+..++
T Consensus       279 -------~~~~~~~~~l~~~~~~~l~a~~  300 (387)
T 2v1u_A          279 -------DRVSEVVRTLPLHAKLVLLSIM  300 (387)
T ss_dssp             -------HHHHHHHHSSCHHHHHHHHHHH
T ss_pred             -------chHHHHHHcCCHHHHHHHHHHH
Confidence                   2344566788888888777777

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.26  E-value=6.9e-11  Score=112.35  Aligned_cols=218  Identities=12%  Similarity=0.070  Sum_probs=132.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCC-CceEEEEEeccCCCHHHHHHHHHHHhcccc--cccChhHHHHHHHHHhc-
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRR-FDIIFWENINTDGNIRDIQEIILERLKVNA--KELNNDLRADIISKELN-   77 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~~~l~-   77 (424)
                      +.+.|+|++|+||||||+.+++....... -..++|+++....+...+...++..++...  ...+..+....+.+.+. 
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~  125 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD  125 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc
Confidence            46899999999999999999998732111 234788888777778888888887776543  22234444555555554 


Q ss_pred             -cCcEEEEEcCCCCcc------hhhhh-ccCC--CCCCcEEEEEecchhhhc---------ccCceEEecCCCHHHHHHH
Q 037045           78 -DRSYVLFLDGVSSEI------NFKEI-GMHD--DHGRGKVVFACRSREFCW---------QADGVIHVQQLCQREAKKL  138 (424)
Q Consensus        78 -~~~~LlvlD~~~~~~------~~~~~-~~~~--~~~~~~iiittr~~~~~~---------~~~~~~~l~~l~~~~~~~l  138 (424)
                       +++.+||||+++...      .+..+ ....  ...+..+|+||+......         .....+.+++++.++..++
T Consensus       126 ~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~i  205 (386)
T 2qby_A          126 YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDI  205 (386)
T ss_dssp             CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHH
T ss_pred             cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHH
Confidence             348999999987643      22222 1111  234556777777653221         1225899999999999999


Q ss_pred             HHHHhcccCCCCccHHHHHHHHHHhcC---CchHHHHHHHHHH-h----C---CcchHHHHHHHHHhhhcCcccccchhh
Q 037045          139 FWEVVGVHLKKYPDIELVADSIVKECG---GMPYMLKLIGKEL-A----N---QSEVAIWRATADELRLTSSEEKKELEE  207 (424)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~I~~~~~---g~Plai~~~a~~l-~----~---~~~~~~~~~~~~~l~~~~~~~~~~~~~  207 (424)
                      +.+.+..........++....+++.++   |.|..+..+.... .    .   .-+.+.+....+...            
T Consensus       206 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~------------  273 (386)
T 2qby_A          206 LTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE------------  273 (386)
T ss_dssp             HHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH------------
T ss_pred             HHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh------------
Confidence            998764321122233556677888887   9997443333221 1    0   112233333322221            


Q ss_pred             hhHHHhhhhccCCcchHhHHhhhhh
Q 037045          208 VDRFFTLVYKNLSLEQQHCLLGWAI  232 (424)
Q Consensus       208 i~~~l~~s~~~L~~~~k~~~~~la~  232 (424)
                       ...+...+..+++..+..+..++.
T Consensus       274 -~~~~~~~~~~l~~~~~~il~ai~~  297 (386)
T 2qby_A          274 -RDRVRDIILTLPFHSKLVLMAVVS  297 (386)
T ss_dssp             -HHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             -hchHHHHHHcCCHHHHHHHHHHHH
Confidence             123455566787777777777764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.25  E-value=3.8e-12  Score=118.79  Aligned_cols=149  Identities=18%  Similarity=0.212  Sum_probs=114.5

Q ss_pred             cceeEEEeeccCCCC--CC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCC-CCC--cCChhhhcccccce
Q 037045          263 AHTKRLSLFGFPSST--LP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHET-NIG--CLPPSISRLINLNA  336 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~--~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~--~~p~~~~~l~~L~~  336 (424)
                      ++|+.|++++|.+..  ++ ....+++|+.|++++|.+++.....+..+++|++|++++| .+.  .++..+..+++|++
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            788999999988764  33 3477889999999999888655445777899999999998 564  36666888899999


Q ss_pred             eeeccccc-cccc--CChhhhccC-CCCEEEecCCc--C--cccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcC
Q 037045          337 LFLRSSCS-LLLQ--LPAEIGRLQ-KLEILDVSHTK--V--QCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMIS  408 (424)
Q Consensus       337 l~l~~~~~-~~~~--lp~~~~~l~-~L~~L~l~~~~--i--~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~  408 (424)
                      |++  .++ .+..  ++..+..++ +|+.|++++|.  +  ..+|..+.++++|++|++++|...           ....
T Consensus       173 L~l--~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l-----------~~~~  239 (336)
T 2ast_B          173 LNL--SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML-----------KNDC  239 (336)
T ss_dssp             EEC--CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC-----------CGGG
T ss_pred             EcC--CCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC-----------CHHH
Confidence            999  555 6653  577788888 99999999984  4  356777788899999999998622           1234


Q ss_pred             hhhhhccccCceeecC
Q 037045          409 LNIISKLRLLEELIIE  424 (424)
Q Consensus       409 ~~~l~~l~~L~~L~l~  424 (424)
                      +..++++++|++|+|+
T Consensus       240 ~~~l~~l~~L~~L~l~  255 (336)
T 2ast_B          240 FQEFFQLNYLQHLSLS  255 (336)
T ss_dssp             GGGGGGCTTCCEEECT
T ss_pred             HHHHhCCCCCCEeeCC
Confidence            5577888999988874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.22  E-value=9.7e-11  Score=117.72  Aligned_cols=131  Identities=23%  Similarity=0.182  Sum_probs=64.5

Q ss_pred             ceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccc
Q 037045          264 HTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSC  343 (424)
Q Consensus       264 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~  343 (424)
                      +++.|++++|.++.+|  ..+++|+.|++++|.++.++..    +++|+.|++++|.+..+|..   +++|++|++  ++
T Consensus       162 ~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~~----~~~L~~L~L~~N~l~~l~~~---~~~L~~L~L--s~  230 (622)
T 3g06_A          162 ELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL---PSGLKELIV--SG  230 (622)
T ss_dssp             TCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCCCC---CTTCCEEEC--CS
T ss_pred             CCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCCCc----cchhhEEECcCCcccccCCC---CCCCCEEEc--cC
Confidence            3333444444433333  2234455555555555544431    23444444444444333321   244555555  45


Q ss_pred             cccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeec
Q 037045          344 SLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELII  423 (424)
Q Consensus       344 ~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  423 (424)
                      |.+..+|   ..+++|+.|++++|.++.+|.   .+++|++|++++|.+.             ..+..++++++|+.|+|
T Consensus       231 N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-------------~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          231 NRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-------------RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             SCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-------------SCCGGGGGSCTTCEEEC
T ss_pred             CccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-------------cCCHHHhhccccCEEEe
Confidence            5555555   233455555555555555554   4455555555555432             22345777778887776


Q ss_pred             C
Q 037045          424 E  424 (424)
Q Consensus       424 ~  424 (424)
                      +
T Consensus       292 ~  292 (622)
T 3g06_A          292 E  292 (622)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.22  E-value=1.2e-10  Score=98.02  Aligned_cols=122  Identities=25%  Similarity=0.355  Sum_probs=102.0

Q ss_pred             cccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceeeecccccccccCChh-hhccCCCCEEE
Q 037045          286 EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALFLRSSCSLLLQLPAE-IGRLQKLEILD  363 (424)
Q Consensus       286 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l~~~~~~~~~lp~~-~~~l~~L~~L~  363 (424)
                      ..+.++++++.++.+|..   ..++|+.|++++|.+..+|+ .+..+++|++|++  .++.+..+|.. ++.+++|+.|+
T Consensus         8 ~~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~   82 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSL--SQNQIQSLPDGVFDKLTKLTILY   82 (177)
T ss_dssp             ETTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEEC--CSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEEC--CCCcceEeChhHccCCCccCEEE
Confidence            468899999999999865   24789999999999977765 4689999999999  88888888764 68999999999


Q ss_pred             ecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045          364 VSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       364 l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                      +++|.++.+|.. +..+++|++|++++|.+.+.            ....+..+++|++|+++
T Consensus        83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~------------~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSV------------PDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC------------CTTTTTTCTTCCEEECC
T ss_pred             CCCCCccccCHHHhhCCcccCEEECcCCcceEe------------CHHHhcCCcccCEEEec
Confidence            999999988876 78999999999999986532            11235778889988874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.21  E-value=7.7e-11  Score=114.56  Aligned_cols=121  Identities=19%  Similarity=0.226  Sum_probs=95.2

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++++.|++++|.++.+|.+..+++|+.|++++|.++++|..    ..+|++|++++|.+..+| .++.+++|++|++  .
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l--~  203 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYA--D  203 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC--C
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEEC--C
Confidence            57888888888888888788888899999998888887653    357888888888887676 5888888888888  7


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCC
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVG  394 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~  394 (424)
                      ++.+..+|...   ++|+.|++++|.++.+|. ++.+++|++|++++|.+.+
T Consensus       204 ~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          204 NNSLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             SSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS
T ss_pred             CCcCCcCCCCc---CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc
Confidence            77777666533   478888888888777774 7788888888888887654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.20  E-value=7.6e-11  Score=98.92  Aligned_cols=106  Identities=19%  Similarity=0.286  Sum_probs=68.4

Q ss_pred             eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeeeccccc
Q 037045          266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFLRSSCS  344 (424)
Q Consensus       266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l~~~~~  344 (424)
                      +.++++++.+..+|... .++|+.|++++|.++++++..+..+++|++|++++|.+..+|+. +..+++|++|++  +++
T Consensus        15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L--~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL--NDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC--CSS
T ss_pred             cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC--CCC
Confidence            45666677666655422 25677777777777766555566667777777777776666544 466677777777  666


Q ss_pred             ccccCChh-hhccCCCCEEEecCCcCcccch
Q 037045          345 LLLQLPAE-IGRLQKLEILDVSHTKVQCLPS  374 (424)
Q Consensus       345 ~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~  374 (424)
                      .+..+|.. +..+++|+.|++++|++...|.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            66666654 6666777777777776665544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.19  E-value=1.2e-10  Score=117.11  Aligned_cols=113  Identities=27%  Similarity=0.259  Sum_probs=72.0

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++++.|++++|.++.+|.  .+++|+.|++++|.++.+|.    .+++|++|++++|.+..+|.   .+++|++|++  .
T Consensus        61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L--~  129 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWI--F  129 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEEC--C
T ss_pred             CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEEC--C
Confidence            567777777777776665  46667777777777776665    35667777777777666655   4566677777  6


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccC
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVEN  392 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~  392 (424)
                      ++.+..+|..   +++|+.|++++|.++.+|..   +++|+.|++++|.+
T Consensus       130 ~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l  173 (622)
T 3g06_A          130 GNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQL  173 (622)
T ss_dssp             SSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC
T ss_pred             CCCCCcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCC
Confidence            6666666653   36677777777776666542   23455555555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.19  E-value=1.7e-12  Score=111.62  Aligned_cols=124  Identities=23%  Similarity=0.273  Sum_probs=101.1

Q ss_pred             ccccEEEccCCCCC-------CCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChhhhccC
Q 037045          285 CEILTLILEGKRLE-------KLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQ  357 (424)
Q Consensus       285 ~~L~~L~l~~~~l~-------~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~  357 (424)
                      ..++.++++.+.+.       .++.. +..+++|++|++++|.+..+| .+..+++|++|++  +++.+..+|..+..++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l--~~n~l~~l~~~~~~~~   93 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSL--GRNLIKKIENLDAVAD   93 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEE--EEEEECSCSSHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEEC--CCCCcccccchhhcCC
Confidence            34444444444444       34444 788999999999999998888 8999999999999  8889999998888889


Q ss_pred             CCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045          358 KLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       358 ~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                      +|+.|++++|.++.+| .+..+++|++|++++|.+.+           ...+..+..+++|++|+++
T Consensus        94 ~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~-----------~~~~~~l~~l~~L~~L~l~  148 (198)
T 1ds9_A           94 TLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITN-----------WGEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             HCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCC-----------HHHHHHHTTTTTCSEEEEC
T ss_pred             cCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCc-----------hhHHHHHhcCCCCCEEEec
Confidence            9999999999999987 68999999999999997542           1223568999999999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.17  E-value=1.1e-10  Score=97.59  Aligned_cols=102  Identities=22%  Similarity=0.305  Sum_probs=52.2

Q ss_pred             eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeeeccccc
Q 037045          266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFLRSSCS  344 (424)
Q Consensus       266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l~~~~~  344 (424)
                      +.|+++++.++.+|... ..+|+.|++++|.++++++..+..+++|++|++++|.+..+|+. +..+++|++|++  +++
T Consensus        12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L--~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL--NDN   88 (170)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC--CSS
T ss_pred             CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC--CCC
Confidence            34555555555544321 24455555555555555444445555555555555555444432 345555555555  455


Q ss_pred             ccccCCh-hhhccCCCCEEEecCCcCc
Q 037045          345 LLLQLPA-EIGRLQKLEILDVSHTKVQ  370 (424)
Q Consensus       345 ~~~~lp~-~~~~l~~L~~L~l~~~~i~  370 (424)
                      .+..+|. .+..+++|+.|++++|++.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            5555544 2445555555555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.16  E-value=1.5e-10  Score=97.09  Aligned_cols=105  Identities=21%  Similarity=0.325  Sum_probs=93.1

Q ss_pred             cccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-ChhhhcccccceeeecccccccccCChh-hhccCCCCEEE
Q 037045          286 EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFLRSSCSLLLQLPAE-IGRLQKLEILD  363 (424)
Q Consensus       286 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l~~~~~~~~~lp~~-~~~l~~L~~L~  363 (424)
                      ..+.+++++|.++.+|...   .++|++|++++|.+..+ |..+..+++|++|++  +++.+..+|.. +..+++|+.|+
T Consensus        13 ~~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L--s~N~l~~i~~~~~~~l~~L~~L~   87 (174)
T 2r9u_A           13 DQTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYF--NSNKLTAIPTGVFDKLTQLTQLD   87 (174)
T ss_dssp             CSSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC--CSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEEC--CCCCCCccChhHhCCcchhhEEE
Confidence            3578999999999999863   38899999999999776 567899999999999  88999999876 58999999999


Q ss_pred             ecCCcCcccchh-hhcCCCCCEeeeccccCCCC
Q 037045          364 VSHTKVQCLPSE-IGQLIELKYLRVSRVENVGN  395 (424)
Q Consensus       364 l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~  395 (424)
                      +++|.++.+|.. +..+++|++|++++|++...
T Consensus        88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            999999999887 89999999999999987544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.15  E-value=2e-10  Score=96.01  Aligned_cols=105  Identities=26%  Similarity=0.306  Sum_probs=93.2

Q ss_pred             cccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-ChhhhcccccceeeecccccccccCChh-hhccCCCCEEE
Q 037045          286 EILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFLRSSCSLLLQLPAE-IGRLQKLEILD  363 (424)
Q Consensus       286 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l~~~~~~~~~lp~~-~~~l~~L~~L~  363 (424)
                      ..+.+++++|.++.+|...   .+.|++|++++|.+..+ |..+..+++|++|++  +++.+..+|.. +..+++|+.|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~L--s~N~l~~l~~~~f~~l~~L~~L~   84 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDL--DNNQLTVLPAGVFDKLTQLTQLS   84 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEEC--CSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEEC--CCCCcCccChhhccCCCCCCEEE
Confidence            4689999999999999763   47899999999999776 567899999999999  88899998875 58999999999


Q ss_pred             ecCCcCcccchh-hhcCCCCCEeeeccccCCCC
Q 037045          364 VSHTKVQCLPSE-IGQLIELKYLRVSRVENVGN  395 (424)
Q Consensus       364 l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~  395 (424)
                      +++|.++.+|.. +..+++|++|++++|++.+.
T Consensus        85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            999999999876 89999999999999987654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.14  E-value=1.1e-11  Score=118.12  Aligned_cols=152  Identities=16%  Similarity=0.139  Sum_probs=84.6

Q ss_pred             cceeEEEeeccCCCCCC--CC----cCc---------ccccEEEccCCCCCC--CCh--HHhcccCCCcEEEccCCCCC-
Q 037045          263 AHTKRLSLFGFPSSTLP--DM----PNC---------CEILTLILEGKRLEK--LPT--SFFDYMCHLQLLDLHETNIG-  322 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~----~~~---------~~L~~L~l~~~~l~~--~~~--~~~~~~~~L~~L~l~~~~~~-  322 (424)
                      ++|++|++++|.+...+  .+    ..+         ++|+.|++++|.++.  .+.  ..+..+++|+.|++++|.+. 
T Consensus       122 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  201 (386)
T 2ca6_A          122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP  201 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH
T ss_pred             CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCH
Confidence            56666666666664311  11    222         566666666666652  221  22445666777777776663 


Q ss_pred             -----cCChhhhcccccceeeeccccccc-----ccCChhhhccCCCCEEEecCCcCcc-----cchhhh--cCCCCCEe
Q 037045          323 -----CLPPSISRLINLNALFLRSSCSLL-----LQLPAEIGRLQKLEILDVSHTKVQC-----LPSEIG--QLIELKYL  385 (424)
Q Consensus       323 -----~~p~~~~~l~~L~~l~l~~~~~~~-----~~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~--~l~~L~~l  385 (424)
                           -.|..+..+++|++|++  +++.+     ..+|..+..+++|+.|++++|.++.     +|..+.  .+++|++|
T Consensus       202 ~g~~~l~~~~l~~~~~L~~L~L--s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L  279 (386)
T 2ca6_A          202 EGIEHLLLEGLAYCQELKVLDL--QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL  279 (386)
T ss_dssp             HHHHHHHHTTGGGCTTCCEEEC--CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred             hHHHHHHHHHhhcCCCccEEEC--cCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEE
Confidence                 12225566667777777  55555     4456666666677777777776653     344442  36667777


Q ss_pred             eeccccCCCCcccCCCCCCCCcChhhh-hccccCceeecC
Q 037045          386 RVSRVENVGNHTHADAGSGEMISLNII-SKLRLLEELIIE  424 (424)
Q Consensus       386 ~l~~n~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~  424 (424)
                      ++++|.+.+.        +.......+ .++++|++|+++
T Consensus       280 ~L~~n~i~~~--------g~~~l~~~l~~~l~~L~~L~l~  311 (386)
T 2ca6_A          280 RLQYNEIELD--------AVRTLKTVIDEKMPDLLFLELN  311 (386)
T ss_dssp             ECCSSCCBHH--------HHHHHHHHHHHHCTTCCEEECT
T ss_pred             ECcCCcCCHH--------HHHHHHHHHHhcCCCceEEEcc
Confidence            7777654320        000122344 557888888764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.14  E-value=9e-10  Score=97.37  Aligned_cols=167  Identities=12%  Similarity=0.064  Sum_probs=96.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc-----cccChhHHHHHHHHHh-
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA-----KELNNDLRADIISKEL-   76 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~l~~~l-   76 (424)
                      .+.|+|++|+||||+|+.+++.......+..   ..+...   .. ...+........     ...........+.+.+ 
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC---DN-CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ  119 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSCS---HH-HHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCccc---HH-HHHHhccCCcceEEecCcccccHHHHHHHHHHhh
Confidence            6899999999999999999988742221110   000000   00 001100000000     0000011111222221 


Q ss_pred             ----ccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhc
Q 037045           77 ----NDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVG  144 (424)
Q Consensus        77 ----~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~  144 (424)
                          .+++.+||+||++...  .++.+  .+.....+..+|+||+......    .....+++++++.++..+++...+.
T Consensus       120 ~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~  199 (250)
T 1njg_A          120 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN  199 (250)
T ss_dssp             CSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             hchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHH
Confidence                2457999999998743  33333  1113345678888887654332    4457899999999999999998875


Q ss_pred             ccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045          145 VHLKKYPDIELVADSIVKECGGMPYMLKLIGKEL  178 (424)
Q Consensus       145 ~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l  178 (424)
                      ...  ....++....|++.|+|+|..+..++..+
T Consensus       200 ~~~--~~~~~~~~~~l~~~~~G~~~~~~~~~~~~  231 (250)
T 1njg_A          200 EEH--IAHEPRALQLLARAAEGSLRDALSLTDQA  231 (250)
T ss_dssp             HTT--CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            431  12234567889999999999888776544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.10  E-value=5.2e-11  Score=113.40  Aligned_cols=152  Identities=12%  Similarity=0.085  Sum_probs=106.2

Q ss_pred             cceeEEEeeccCCCC-----CC-CCcCcccccEEEccCCCCCCCChHHhc----cc---------CCCcEEEccCCCCC-
Q 037045          263 AHTKRLSLFGFPSST-----LP-DMPNCCEILTLILEGKRLEKLPTSFFD----YM---------CHLQLLDLHETNIG-  322 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~----~~---------~~L~~L~l~~~~~~-  322 (424)
                      ++|++|++++|.+..     ++ .+..+++|+.|++++|.++......+.    .+         ++|++|++++|.+. 
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence            788888888888776     22 236778888888888888643332222    23         78888888888874 


Q ss_pred             -cCC---hhhhcccccceeeecccccccc------cCChhhhccCCCCEEEecCCcC-----cccchhhhcCCCCCEeee
Q 037045          323 -CLP---PSISRLINLNALFLRSSCSLLL------QLPAEIGRLQKLEILDVSHTKV-----QCLPSEIGQLIELKYLRV  387 (424)
Q Consensus       323 -~~p---~~~~~l~~L~~l~l~~~~~~~~------~lp~~~~~l~~L~~L~l~~~~i-----~~lp~~i~~l~~L~~l~l  387 (424)
                       .+|   ..+..+++|++|++  +++.+.      -.|..+..+++|+.|++++|.+     ..+|..+..+++|++|++
T Consensus       174 ~~~~~l~~~l~~~~~L~~L~L--~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L  251 (386)
T 2ca6_A          174 GSMKEWAKTFQSHRLLHTVKM--VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  251 (386)
T ss_dssp             GGHHHHHHHHHHCTTCCEEEC--CSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             HHHHHHHHHHHhCCCcCEEEC--cCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence             344   35667888888888  666665      2233677888899999988887     457777888888999999


Q ss_pred             ccccCCCCcccCCCCCCCCcChhhh--hccccCceeecC
Q 037045          388 SRVENVGNHTHADAGSGEMISLNII--SKLRLLEELIIE  424 (424)
Q Consensus       388 ~~n~~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~  424 (424)
                      ++|.+.+.        +.......+  +++++|++|+|+
T Consensus       252 ~~n~i~~~--------~~~~l~~~l~~~~~~~L~~L~L~  282 (386)
T 2ca6_A          252 NDCLLSAR--------GAAAVVDAFSKLENIGLQTLRLQ  282 (386)
T ss_dssp             TTCCCCHH--------HHHHHHHHHHTCSSCCCCEEECC
T ss_pred             CCCCCchh--------hHHHHHHHHhhccCCCeEEEECc
Confidence            88865321        000122344  348889999875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.06  E-value=3.2e-09  Score=92.42  Aligned_cols=157  Identities=15%  Similarity=0.088  Sum_probs=96.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      .+.|+|++|+|||++|+.+++.......-...+.++.+.......+...+........              ...+++.+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~v  105 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP--------------IGGAPFKI  105 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCC--------------STTCSCEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccC--------------CCccCceE
Confidence            4889999999999999999987632211122444554444343333222211111000              01246889


Q ss_pred             EEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHH
Q 037045           83 LFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIE  154 (424)
Q Consensus        83 lvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~  154 (424)
                      ||+||++...  ..+.+  .+.....++.+|+||+......    .....+++.+++.++..+++.+.+....  ....+
T Consensus       106 liiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~--~~~~~  183 (226)
T 2chg_A          106 IFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEG--VKITE  183 (226)
T ss_dssp             EEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT--CCBCH
T ss_pred             EEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcC--CCCCH
Confidence            9999998753  22333  1112345678888887654322    4445899999999999999998775431  11234


Q ss_pred             HHHHHHHHhcCCchHHHHHHH
Q 037045          155 LVADSIVKECGGMPYMLKLIG  175 (424)
Q Consensus       155 ~~~~~I~~~~~g~Plai~~~a  175 (424)
                      +....+++.++|.|..+..+.
T Consensus       184 ~~~~~l~~~~~g~~r~l~~~l  204 (226)
T 2chg_A          184 DGLEALIYISGGDFRKAINAL  204 (226)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHH
Confidence            567889999999998654443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.05  E-value=2.2e-10  Score=108.07  Aligned_cols=151  Identities=13%  Similarity=0.097  Sum_probs=90.8

Q ss_pred             ceeEEEeeccCCCCCC--CCcCc-----ccccEEEccCCCCCCCChHHhcc----c-CCCcEEEccCCCCCcCCh-hhhc
Q 037045          264 HTKRLSLFGFPSSTLP--DMPNC-----CEILTLILEGKRLEKLPTSFFDY----M-CHLQLLDLHETNIGCLPP-SISR  330 (424)
Q Consensus       264 ~l~~L~l~~~~~~~~~--~~~~~-----~~L~~L~l~~~~l~~~~~~~~~~----~-~~L~~L~l~~~~~~~~p~-~~~~  330 (424)
                      +|+.|++++|.+....  .+..+     ++|+.|++++|.++..+...+..    + ++|+.|++++|.+...+. .+..
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            6777888887777632  22332     77788888888777655543332    3 678888888887754442 3322


Q ss_pred             -----ccccceeeecccccccc-----cCChhhhccC-CCCEEEecCCcCcccch-----hhhcC-CCCCEeeeccccCC
Q 037045          331 -----LINLNALFLRSSCSLLL-----QLPAEIGRLQ-KLEILDVSHTKVQCLPS-----EIGQL-IELKYLRVSRVENV  393 (424)
Q Consensus       331 -----l~~L~~l~l~~~~~~~~-----~lp~~~~~l~-~L~~L~l~~~~i~~lp~-----~i~~l-~~L~~l~l~~n~~~  393 (424)
                           ..+|++|++  +++.++     .++..+..++ +|+.|++++|.++..+.     .+..+ ++|++|++++|.+.
T Consensus       132 ~l~~~~~~L~~L~L--s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          132 AFSNLPASITSLNL--RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HHTTSCTTCCEEEC--TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHhCCCceeEEEc--cCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence                 257788888  666665     3344445555 78888888887764432     23344 47888888887653


Q ss_pred             CCcccCCCCCCCCcChhhhhcc-ccCceeecC
Q 037045          394 GNHTHADAGSGEMISLNIISKL-RLLEELIIE  424 (424)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~  424 (424)
                      ..        +.......+..+ ++|++|+|+
T Consensus       210 ~~--------~~~~l~~~l~~~~~~L~~L~Ls  233 (362)
T 3goz_A          210 LK--------SYAELAYIFSSIPNHVVSLNLC  233 (362)
T ss_dssp             GS--------CHHHHHHHHHHSCTTCCEEECC
T ss_pred             hh--------HHHHHHHHHhcCCCCceEEECc
Confidence            21        011123344443 488888875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.02  E-value=8.4e-10  Score=103.54  Aligned_cols=146  Identities=23%  Similarity=0.233  Sum_probs=97.8

Q ss_pred             cceeEEEeeccCCCCCCCC--cCcccccEEEccC-CCCCCCChHHhccc-CCCcEEEccCCCCCcCChhhhcccccceee
Q 037045          263 AHTKRLSLFGFPSSTLPDM--PNCCEILTLILEG-KRLEKLPTSFFDYM-CHLQLLDLHETNIGCLPPSISRLINLNALF  338 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~-~~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~  338 (424)
                      ++|+.|++++|.+..++..  ....++..|++.+ +.++.++...+..+ ..++.|++++|.+..+|.......+|+.++
T Consensus       104 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~  183 (350)
T 4ay9_X          104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN  183 (350)
T ss_dssp             TTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEE
T ss_pred             cccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHh
Confidence            6777777777777776544  3344555666653 56666665544444 357778888888877776666667788888


Q ss_pred             ecccccccccCCh-hhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcccc
Q 037045          339 LRSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRL  417 (424)
Q Consensus       339 l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~  417 (424)
                      +. .++.+..+|. .+..+++|+.|++++|+++.+|..  .+.+|+.|.+.++.             ....++.+.+|++
T Consensus       184 l~-~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~-------------~l~~lP~l~~l~~  247 (350)
T 4ay9_X          184 LS-DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTY-------------NLKKLPTLEKLVA  247 (350)
T ss_dssp             CT-TCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCT-------------TCCCCCCTTTCCS
T ss_pred             hc-cCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCC-------------CcCcCCCchhCcC
Confidence            73 5677777776 357778888888888888888763  34455555555543             3345566788888


Q ss_pred             CceeecC
Q 037045          418 LEELIIE  424 (424)
Q Consensus       418 L~~L~l~  424 (424)
                      |+.++++
T Consensus       248 L~~l~l~  254 (350)
T 4ay9_X          248 LMEASLT  254 (350)
T ss_dssp             CCEEECS
T ss_pred             hhhCcCC
Confidence            8888763

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.02  E-value=2.3e-10  Score=107.87  Aligned_cols=128  Identities=20%  Similarity=0.156  Sum_probs=59.7

Q ss_pred             cceeEEEeeccCCCCCCC------CcCc-ccccEEEccCCCCCCCChHHhcc-----cCCCcEEEccCCCCCc-----CC
Q 037045          263 AHTKRLSLFGFPSSTLPD------MPNC-CEILTLILEGKRLEKLPTSFFDY-----MCHLQLLDLHETNIGC-----LP  325 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~------~~~~-~~L~~L~l~~~~l~~~~~~~~~~-----~~~L~~L~l~~~~~~~-----~p  325 (424)
                      ++|+.|++++|.+...+.      +..+ ++|+.|++++|.++..+...+..     .++|++|++++|.+..     ++
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            455566666655554221      1222 45566666665555544432222     1355555655555531     22


Q ss_pred             hhhhccc-ccceeeecccccccccCC-h----hhhcc-CCCCEEEecCCcCcc-----cchhhhcC-CCCCEeeeccccC
Q 037045          326 PSISRLI-NLNALFLRSSCSLLLQLP-A----EIGRL-QKLEILDVSHTKVQC-----LPSEIGQL-IELKYLRVSRVEN  392 (424)
Q Consensus       326 ~~~~~l~-~L~~l~l~~~~~~~~~lp-~----~~~~l-~~L~~L~l~~~~i~~-----lp~~i~~l-~~L~~l~l~~n~~  392 (424)
                      ..+..++ +|++|++  +++.+...+ .    .+..+ ++|+.|++++|.++.     +|..+... ++|++|++++|.+
T Consensus       160 ~~l~~~~~~L~~L~L--s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          160 QILAAIPANVNSLNL--RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             HHHHTSCTTCCEEEC--TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred             HHHhcCCccccEeee--cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            2223333 5555555  444444322 1    22223 355555555555554     44444332 3555555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.00  E-value=8.5e-10  Score=103.48  Aligned_cols=160  Identities=13%  Similarity=0.115  Sum_probs=89.2

Q ss_pred             cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCC-CChHHhcccCCCcE-EEccCCCCCcCC-hhhhccccccee
Q 037045          263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEK-LPTSFFDYMCHLQL-LDLHETNIGCLP-PSISRLINLNAL  337 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~-L~l~~~~~~~~p-~~~~~l~~L~~l  337 (424)
                      ++++.|++++|.++.+|.  +..+++|+.|++++|.+.+ ++...+..++++.. +.+.+|++..+| ..+..+++|+++
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            567788888888877653  4677888888888877654 55555566666554 445556665553 446677777777


Q ss_pred             eecccccccccCCh-hhhccCCCCEEEecCC-cCcccchh-hhcCC-CCCEeeeccccCCCCcccC----------CCCC
Q 037045          338 FLRSSCSLLLQLPA-EIGRLQKLEILDVSHT-KVQCLPSE-IGQLI-ELKYLRVSRVENVGNHTHA----------DAGS  403 (424)
Q Consensus       338 ~l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~-~i~~lp~~-i~~l~-~L~~l~l~~n~~~~~~~~~----------~~~~  403 (424)
                      ++  .++.+..+|. .+....++..+++..+ .+..+|.. +..+. .++.|++++|.+.+..+..          ....
T Consensus       110 ~l--~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~  187 (350)
T 4ay9_X          110 LI--SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN  187 (350)
T ss_dssp             EE--EEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC
T ss_pred             cc--cccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccC
Confidence            77  6666665543 2333444555555433 34444433 33332 4555555555543211110          0001


Q ss_pred             CCCcChh--hhhccccCceeecC
Q 037045          404 GEMISLN--IISKLRLLEELIIE  424 (424)
Q Consensus       404 ~~~~~~~--~l~~l~~L~~L~l~  424 (424)
                      .....++  .++.+++|++|+|+
T Consensus       188 n~l~~i~~~~f~~l~~L~~LdLs  210 (350)
T 4ay9_X          188 NNLEELPNDVFHGASGPVILDIS  210 (350)
T ss_dssp             TTCCCCCTTTTTTEECCSEEECT
T ss_pred             CcccCCCHHHhccCcccchhhcC
Confidence            1122222  35778888888775

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.85  E-value=5e-10  Score=109.12  Aligned_cols=130  Identities=17%  Similarity=0.147  Sum_probs=62.9

Q ss_pred             ccccEEEccCCCCCCCC----hHHhcccCCCcEEEccCCCCCcC------Chhhhcccccceeeeccccccccc-----C
Q 037045          285 CEILTLILEGKRLEKLP----TSFFDYMCHLQLLDLHETNIGCL------PPSISRLINLNALFLRSSCSLLLQ-----L  349 (424)
Q Consensus       285 ~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~------p~~~~~l~~L~~l~l~~~~~~~~~-----l  349 (424)
                      ++|+.|++++|.++...    ...+..+++|+.|++++|.+...      +..+..+++|++|++  +++.+..     +
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L--~~n~l~~~~~~~l  276 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI--WECGITAKGCGDL  276 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC--TTSCCCHHHHHHH
T ss_pred             CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC--cCCCCCHHHHHHH
Confidence            35555555555555421    22234455555555555554221      111123455555555  4444443     4


Q ss_pred             ChhhhccCCCCEEEecCCcCccc-chhhh-----cCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceeec
Q 037045          350 PAEIGRLQKLEILDVSHTKVQCL-PSEIG-----QLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELII  423 (424)
Q Consensus       350 p~~~~~l~~L~~L~l~~~~i~~l-p~~i~-----~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  423 (424)
                      +..+..+++|+.|++++|.+... +..+.     ..++|++|++++|.+.+.        ........+..+++|++|+|
T Consensus       277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--------~~~~l~~~l~~~~~L~~L~L  348 (461)
T 1z7x_W          277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA--------CCSHFSSVLAQNRFLLELQI  348 (461)
T ss_dssp             HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG--------GHHHHHHHHHHCSSCCEEEC
T ss_pred             HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH--------HHHHHHHHHhhCCCccEEEc
Confidence            44455555566666665555421 11121     114566666666543221        00113445677899999987


Q ss_pred             C
Q 037045          424 E  424 (424)
Q Consensus       424 ~  424 (424)
                      +
T Consensus       349 s  349 (461)
T 1z7x_W          349 S  349 (461)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.83  E-value=1.3e-08  Score=95.14  Aligned_cols=102  Identities=18%  Similarity=0.151  Sum_probs=64.1

Q ss_pred             EEEeecc-CCCCCCCCcCcccccEEEccC-CCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeecccc
Q 037045          267 RLSLFGF-PSSTLPDMPNCCEILTLILEG-KRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRSSC  343 (424)
Q Consensus       267 ~L~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~~~  343 (424)
                      .++++++ .++.+|.+..+.+|+.|+|++ |.++.+++..+..+++|+.|++++|.+..+| ..|..+++|++|++  ++
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l--~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL--SF   89 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC--CS
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC--CC
Confidence            3455665 666665566666677777764 7777666655666677777777777665443 34566677777777  66


Q ss_pred             cccccCChhhhccCCCCEEEecCCcCc
Q 037045          344 SLLLQLPAEIGRLQKLEILDVSHTKVQ  370 (424)
Q Consensus       344 ~~~~~lp~~~~~l~~L~~L~l~~~~i~  370 (424)
                      |.+..+|..+.....|+.|++.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CccceeCHHHcccCCceEEEeeCCCcc
Confidence            666666654443333667777666655

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.81  E-value=3.8e-08  Score=90.91  Aligned_cols=156  Identities=16%  Similarity=0.184  Sum_probs=94.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-ccCcEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-NDRSYV   82 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~L   82 (424)
                      +.|+|++|+|||++|+.+++..........+++++.+.......+ +++...+....             ..+ .+++.+
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~-------------~~~~~~~~~v  110 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHFAQKK-------------LHLPPGKHKI  110 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHHHBC-------------CCCCTTCCEE
T ss_pred             EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHHHhcc-------------ccCCCCCceE
Confidence            789999999999999999988631111122455554443333222 22222211000             011 345889


Q ss_pred             EEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHH
Q 037045           83 LFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIE  154 (424)
Q Consensus        83 lvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~  154 (424)
                      +|+|+++...  ..+.+  .+.....++.+|++|+......    .....+++.+++.++..+++...+....  ....+
T Consensus       111 iiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~--~~~~~  188 (323)
T 1sxj_B          111 VILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLED--VKYTN  188 (323)
T ss_dssp             EEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT--CCBCH
T ss_pred             EEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcC--CCCCH
Confidence            9999998753  22222  1112335677888776644322    5566899999999999999988765331  12224


Q ss_pred             HHHHHHHHhcCCchHH-HHHHH
Q 037045          155 LVADSIVKECGGMPYM-LKLIG  175 (424)
Q Consensus       155 ~~~~~I~~~~~g~Pla-i~~~a  175 (424)
                      +.+..|++.++|.|.. +..+.
T Consensus       189 ~~~~~l~~~~~G~~r~a~~~l~  210 (323)
T 1sxj_B          189 DGLEAIIFTAEGDMRQAINNLQ  210 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHH
Confidence            5678899999999954 44443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.80  E-value=1.1e-08  Score=95.59  Aligned_cols=103  Identities=18%  Similarity=0.094  Sum_probs=83.5

Q ss_pred             cEEEccCC-CCCCCChHHhcccCCCcEEEccC-CCCCcCC-hhhhcccccceeeecccccccccCCh-hhhccCCCCEEE
Q 037045          288 LTLILEGK-RLEKLPTSFFDYMCHLQLLDLHE-TNIGCLP-PSISRLINLNALFLRSSCSLLLQLPA-EIGRLQKLEILD  363 (424)
Q Consensus       288 ~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~-~~~~~~p-~~~~~l~~L~~l~l~~~~~~~~~lp~-~~~~l~~L~~L~  363 (424)
                      ..++++++ .++.+|.  +..+++|+.|++++ |.+..+| ..|+.+++|+.|++  ++|.+..+|+ .++.+++|+.|+
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l--~~N~l~~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI--VKSGLRFVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEEC--CSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEEC--CCCccceeCHHHhcCCcCCCEEe
Confidence            45688887 8888887  77888899999996 8887776 56889999999999  7778877765 678899999999


Q ss_pred             ecCCcCcccchhhhcCCCCCEeeeccccCCC
Q 037045          364 VSHTKVQCLPSEIGQLIELKYLRVSRVENVG  394 (424)
Q Consensus       364 l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~  394 (424)
                      +++|.++.+|..+.....|+.|++.+|.+..
T Consensus        87 l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           87 LSFNALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence            9999999888764333349999999998754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.78  E-value=1.4e-09  Score=105.90  Aligned_cols=128  Identities=19%  Similarity=0.180  Sum_probs=77.3

Q ss_pred             cceeEEEeeccCCCC-----CCC-CcCcccccEEEccCCCCCCCC-hHHhcccC----CCcEEEccCCCCC-----cCCh
Q 037045          263 AHTKRLSLFGFPSST-----LPD-MPNCCEILTLILEGKRLEKLP-TSFFDYMC----HLQLLDLHETNIG-----CLPP  326 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~----~L~~L~l~~~~~~-----~~p~  326 (424)
                      ++++.|++++|.+..     ++. +..+++|+.|++++|.+++.. ......++    +|++|++++|.+.     .+|.
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  107 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  107 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence            667777777777663     122 255677777777777766432 22223344    5777777777764     3456


Q ss_pred             hhhcccccceeeecccccccccC-Chhhh-----ccCCCCEEEecCCcCcc-----cchhhhcCCCCCEeeeccccC
Q 037045          327 SISRLINLNALFLRSSCSLLLQL-PAEIG-----RLQKLEILDVSHTKVQC-----LPSEIGQLIELKYLRVSRVEN  392 (424)
Q Consensus       327 ~~~~l~~L~~l~l~~~~~~~~~l-p~~~~-----~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~l~l~~n~~  392 (424)
                      .+..+++|++|++  +++.+... +..+.     ..++|+.|++++|.++.     ++..+..+++|++|++++|.+
T Consensus       108 ~l~~~~~L~~L~L--s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          108 TLRTLPTLQELHL--SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             HTTSCTTCCEEEC--CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHccCCceeEEEC--CCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence            6677777777777  55555422 22222     23467777777777653     344456667777777777754

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.76  E-value=2.1e-07  Score=84.79  Aligned_cols=144  Identities=8%  Similarity=0.028  Sum_probs=88.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCC---C--ceEEEEEeccCCCHHHHHHHHHHHhcccc--cccChhHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRR---F--DIIFWENINTDGNIRDIQEIILERLKVNA--KELNNDLRADIISK   74 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~~   74 (424)
                      +.+.|+|++|+|||++|+.+++.......   .  -..+++++....+...++..|++++....  ...........+..
T Consensus        46 ~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~  125 (318)
T 3te6_A           46 KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITN  125 (318)
T ss_dssp             CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence            35789999999999999999998853211   1  13677787788889999999999996543  11122222223322


Q ss_pred             H--hccCcEEEEEcCCCCcchhhhh----ccC-CCCCCcEEEEEecchh-----hhc-----ccCceEEecCCCHHHHHH
Q 037045           75 E--LNDRSYVLFLDGVSSEINFKEI----GMH-DDHGRGKVVFACRSRE-----FCW-----QADGVIHVQQLCQREAKK  137 (424)
Q Consensus        75 ~--l~~~~~LlvlD~~~~~~~~~~~----~~~-~~~~~~~iiittr~~~-----~~~-----~~~~~~~l~~l~~~~~~~  137 (424)
                      .  -.++.+++++|+++...+-+-+    .++ .......+|.++...+     +.+     .....+.+.+++.+|-.+
T Consensus       126 ~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~  205 (318)
T 3te6_A          126 VPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQ  205 (318)
T ss_dssp             SCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHH
T ss_pred             hhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHH
Confidence            1  1346799999999886421211    111 1222233333343221     111     122579999999999999


Q ss_pred             HHHHHhcc
Q 037045          138 LFWEVVGV  145 (424)
Q Consensus       138 l~~~~~~~  145 (424)
                      ++.+++..
T Consensus       206 Il~~Rl~~  213 (318)
T 3te6_A          206 MIITRLKS  213 (318)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988854

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.70  E-value=1e-08  Score=103.15  Aligned_cols=128  Identities=13%  Similarity=-0.026  Sum_probs=65.2

Q ss_pred             cceeEEEeeccCCCCCCC------CcCcccccEEEccCCCCCCCCh----HHhcccCCCcEEEccCCCCCcCChhhhccc
Q 037045          263 AHTKRLSLFGFPSSTLPD------MPNCCEILTLILEGKRLEKLPT----SFFDYMCHLQLLDLHETNIGCLPPSISRLI  332 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~  332 (424)
                      ++|+.|++++|.+.....      ...+++|+.|++++|.++++..    ..+..+++|+.|++++|.+..+|..+..++
T Consensus       164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~  243 (592)
T 3ogk_B          164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA  243 (592)
T ss_dssp             TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCT
T ss_pred             CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhh
Confidence            566666666665443211      1345666666666666653322    123345666666666666555555556666


Q ss_pred             ccceeeeccccccc---ccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeecccc
Q 037045          333 NLNALFLRSSCSLL---LQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVE  391 (424)
Q Consensus       333 ~L~~l~l~~~~~~~---~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~  391 (424)
                      +|+.++++ ..+..   ...+..+..+++|+.++++++....+|..+..+++|++|++++|.
T Consensus       244 ~L~~L~l~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          244 NLEEFCGG-SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             TCCEEEEC-BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred             HHHhhccc-ccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence            66666662 12111   112233444445555555444334455445555566666666554

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=98.65  E-value=1.4e-07  Score=87.19  Aligned_cols=159  Identities=15%  Similarity=0.115  Sum_probs=93.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCC-ceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRF-DIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      -+.|+|++|+||||+|+.+++..... .+ ...+.++.+.......+...+ ..+...             .....+++.
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~~~~~  112 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGINVIREKV-KEFART-------------KPIGGASFK  112 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHHHTTHHHH-HHHHHS-------------CCGGGCSCE
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhcCC-cccCceEEeeccccCchHHHHHHH-HHHHhh-------------CCcCCCCCe
Confidence            47899999999999999999986311 11 123333332211111111111 100000             001125688


Q ss_pred             EEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCCccH
Q 037045           82 VLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDI  153 (424)
Q Consensus        82 LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~  153 (424)
                      ++|+|+++...  ..+.+  .+.....++.+|+||.......    .....+++.+++.++..+++...+...  .....
T Consensus       113 vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~--~~~~~  190 (327)
T 1iqp_A          113 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENE--GLELT  190 (327)
T ss_dssp             EEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTT--TCEEC
T ss_pred             EEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhc--CCCCC
Confidence            99999998753  23333  1112334678888876644322    344588999999999999998877543  12233


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHH
Q 037045          154 ELVADSIVKECGGMPYMLKLIGKEL  178 (424)
Q Consensus       154 ~~~~~~I~~~~~g~Plai~~~a~~l  178 (424)
                      ++....|++.++|.|..+..+...+
T Consensus       191 ~~~~~~l~~~~~g~~r~~~~~l~~~  215 (327)
T 1iqp_A          191 EEGLQAILYIAEGDMRRAINILQAA  215 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            5677889999999998665544433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.64  E-value=2.2e-09  Score=101.26  Aligned_cols=128  Identities=18%  Similarity=0.149  Sum_probs=86.3

Q ss_pred             cceeEEEeeccCCCC--CCCC-cCcccccEEEccCCCCCCCChHHh-----cccCCCcEEEccCCCCCc-----CChhhh
Q 037045          263 AHTKRLSLFGFPSST--LPDM-PNCCEILTLILEGKRLEKLPTSFF-----DYMCHLQLLDLHETNIGC-----LPPSIS  329 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~--~~~~-~~~~~L~~L~l~~~~l~~~~~~~~-----~~~~~L~~L~l~~~~~~~-----~p~~~~  329 (424)
                      .+|+.|++++|.+..  +..+ ..+++|+.|++++|.++......+     ...++|+.|++++|.++.     ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            578888888887764  2222 446678888888888875433322     235678888888887732     334456


Q ss_pred             cccccceeeeccccccccc-----CChhhhccCCCCEEEecCCcCcc-----cchhhhcCCCCCEeeeccccC
Q 037045          330 RLINLNALFLRSSCSLLLQ-----LPAEIGRLQKLEILDVSHTKVQC-----LPSEIGQLIELKYLRVSRVEN  392 (424)
Q Consensus       330 ~l~~L~~l~l~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~l~l~~n~~  392 (424)
                      ..++|++|++  ++|.++.     ++..+...++|+.|++++|.++.     ++..+...++|++|++++|.+
T Consensus       181 ~~~~L~~L~L--s~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          181 GNTSVTHLSL--LHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             TCSSCCEEEC--TTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             cCCCcCEEeC--CCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            6778888888  6666653     34456667788888888888763     333455667888888888865

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.62  E-value=5.5e-09  Score=98.55  Aligned_cols=152  Identities=15%  Similarity=0.131  Sum_probs=87.4

Q ss_pred             cceeEEEeeccCCCCCC--CC-----cCcccccEEEccCCCCCCCCh-HHhcccCCCcEEEccCCCCCcC-Chhhh----
Q 037045          263 AHTKRLSLFGFPSSTLP--DM-----PNCCEILTLILEGKRLEKLPT-SFFDYMCHLQLLDLHETNIGCL-PPSIS----  329 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~-----~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~-p~~~~----  329 (424)
                      ++++.|++++|.++...  .+     ..+++|+.|++++|.++.... .....+++|+.|++++|.++.. ...++    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            56777777777766421  11     233577777777777764222 2123355677777777776332 12221    


Q ss_pred             -cccccceeeeccccccccc-----CChhhhccCCCCEEEecCCcCcc-----cchhhhcCCCCCEeeeccccCCCCccc
Q 037045          330 -RLINLNALFLRSSCSLLLQ-----LPAEIGRLQKLEILDVSHTKVQC-----LPSEIGQLIELKYLRVSRVENVGNHTH  398 (424)
Q Consensus       330 -~l~~L~~l~l~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~l~l~~n~~~~~~~~  398 (424)
                       ..++|++|++  ++|.++.     ++..+..+++|++|++++|.++.     ++..+...++|+.|++++|.+...   
T Consensus       152 ~~~~~L~~L~L--s~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~---  226 (372)
T 3un9_A          152 HDQCQITTLRL--SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT---  226 (372)
T ss_dssp             STTCCCCEEEC--CSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH---
T ss_pred             hcCCccceeeC--CCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH---
Confidence             2466777777  5666543     34445666777777777777653     234456667777777777764311   


Q ss_pred             CCCCCCCCcChhhhhccccCceeecC
Q 037045          399 ADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       399 ~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                           +.......+...++|++|+|+
T Consensus       227 -----g~~~l~~~L~~~~~L~~L~Ls  247 (372)
T 3un9_A          227 -----AALALARAAREHPSLELLHLY  247 (372)
T ss_dssp             -----HHHHHHHHHHHCSSCCEEECT
T ss_pred             -----HHHHHHHHHHhCCCCCEEecc
Confidence                 001122334456677777664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.59  E-value=8.3e-08  Score=89.01  Aligned_cols=37  Identities=11%  Similarity=0.230  Sum_probs=22.7

Q ss_pred             cccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC
Q 037045          284 CCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI  321 (424)
Q Consensus       284 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  321 (424)
                      |++|+.|.++. .++.++...|..+++|+.++++.|.+
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i  136 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTA  136 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCc
Confidence            66666666666 66666666666666666666666543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=1.3e-07  Score=87.65  Aligned_cols=99  Identities=15%  Similarity=0.136  Sum_probs=71.2

Q ss_pred             cCCCcEEEccCCCCCcCCh-hhhcccccceeeecccccccccCCh-hhhccCCCC-EEEecCCcCcccchh-hhcCCCCC
Q 037045          308 MCHLQLLDLHETNIGCLPP-SISRLINLNALFLRSSCSLLLQLPA-EIGRLQKLE-ILDVSHTKVQCLPSE-IGQLIELK  383 (424)
Q Consensus       308 ~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~l~~~~~~~~~lp~-~~~~l~~L~-~L~l~~~~i~~lp~~-i~~l~~L~  383 (424)
                      +++|+.+++++|.+..+|. .|..+.+|+.+++  ..+ +..++. .+..|.+|+ .+.++. .++.++.. |..+++|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l--~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL--PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC--CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEEC--Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            6678888888887877764 5788888888888  555 666654 577888888 888877 67767654 88888888


Q ss_pred             EeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          384 YLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       384 ~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      .+++++|.+..-            .-..+.++++|+++.
T Consensus       301 ~l~l~~n~i~~I------------~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          301 YVLATGDKITTL------------GDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEECSSCCCEE------------CTTTTCTTCCCCEEE
T ss_pred             EEEeCCCccCcc------------chhhhcCCcchhhhc
Confidence            888877754321            223567777777764

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.54  E-value=4.3e-07  Score=87.48  Aligned_cols=157  Identities=12%  Similarity=0.142  Sum_probs=95.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      .+.|+|++|+||||||+.+++.......-..+++++...      +..++...+....        ...+.+.++.+..+
T Consensus       132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~~~~~~~~--------~~~~~~~~~~~~~v  197 (440)
T 2z4s_A          132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLVDSMKEGK--------LNEFREKYRKKVDI  197 (440)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHHHHHHTTC--------HHHHHHHHTTTCSE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHHHHHccc--------HHHHHHHhcCCCCE
Confidence            578999999999999999999873211112356655432      3344444333211        12233334436779


Q ss_pred             EEEcCCCCcch----hhhh--ccC-CCCCCcEEEEEecchhhh-----c------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045           83 LFLDGVSSEIN----FKEI--GMH-DDHGRGKVVFACRSREFC-----W------QADGVIHVQQLCQREAKKLFWEVVG  144 (424)
Q Consensus        83 lvlD~~~~~~~----~~~~--~~~-~~~~~~~iiittr~~~~~-----~------~~~~~~~l~~l~~~~~~~l~~~~~~  144 (424)
                      |+||+++....    .+.+  .+. ....+..||+||......     .      .....+.+++++.++..+++.+.+.
T Consensus       198 L~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~  277 (440)
T 2z4s_A          198 LLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLE  277 (440)
T ss_dssp             EEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred             EEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence            99999976542    2222  111 134567888888763221     1      2336788999999999999988775


Q ss_pred             ccCCCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045          145 VHLKKYPDIELVADSIVKECGGMPYMLKLIG  175 (424)
Q Consensus       145 ~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a  175 (424)
                      ....  ...++....|++.+.|.+..+..+.
T Consensus       278 ~~~~--~i~~e~l~~la~~~~gn~R~l~~~L  306 (440)
T 2z4s_A          278 IEHG--ELPEEVLNFVAENVDDNLRRLRGAI  306 (440)
T ss_dssp             HHTC--CCCTTHHHHHHHHCCSCHHHHHHHH
T ss_pred             HcCC--CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence            3211  1113456788999999887655443

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=98.53  E-value=1.3e-06  Score=80.44  Aligned_cols=154  Identities=14%  Similarity=0.110  Sum_probs=93.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCc-eEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHH--h-cc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFD-IIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKE--L-ND   78 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~--l-~~   78 (424)
                      .+.|+|++|+|||++|+.+++... ...+. ..+.++.+.......                 .......+...  + .+
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~  101 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDV-----------------VRHKIKEFARTAPIGGA  101 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTTT-----------------SSHHHHHHHHSCCSSSC
T ss_pred             eEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChHH-----------------HHHHHHHHHhcCCCCCC
Confidence            378999999999999999999863 12221 234444433211110                 11111111111  1 24


Q ss_pred             CcEEEEEcCCCCcch--hhhh-c-cCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCC
Q 037045           79 RSYVLFLDGVSSEIN--FKEI-G-MHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKY  150 (424)
Q Consensus        79 ~~~LlvlD~~~~~~~--~~~~-~-~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~  150 (424)
                      ++.++|+|+++....  .+.+ . +.....++.+|++|.......    .....+++.+++.++..+++...+....  .
T Consensus       102 ~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~--~  179 (319)
T 2chq_A          102 PFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEG--V  179 (319)
T ss_dssp             CCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTC--C
T ss_pred             CceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcC--C
Confidence            678999999987532  2333 1 112335667777776544222    5556899999999999999988875432  2


Q ss_pred             ccHHHHHHHHHHhcCCchHHHHHHHH
Q 037045          151 PDIELVADSIVKECGGMPYMLKLIGK  176 (424)
Q Consensus       151 ~~~~~~~~~I~~~~~g~Plai~~~a~  176 (424)
                      ...++....+++.++|.+..+.....
T Consensus       180 ~i~~~~l~~l~~~~~G~~r~~~~~l~  205 (319)
T 2chq_A          180 KITEDGLEALIYISGGDFRKAINALQ  205 (319)
T ss_dssp             CBCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            23355678899999999976554433

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.52  E-value=1.5e-06  Score=81.97  Aligned_cols=164  Identities=13%  Similarity=0.079  Sum_probs=92.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcc-----cc-cccChhHHHHHHHHHh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKV-----NA-KELNNDLRADIISKEL   76 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~~-~~~~~~~~~~~l~~~l   76 (424)
                      .+.|+|+.|+||||+|+.+++.......+..   ..++..    .....+...-..     .. .....++ ...+.+.+
T Consensus        40 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~  111 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIEQGRFVDLIEIDAASRTKVED-TRDLLDNV  111 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHHTSCCSSCEEEETTCSCCSSC-HHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHhccCCCceEEecccccCCHHH-HHHHHHHH
Confidence            5789999999999999999988742211110   001110    001111100000     00 0011111 12222222


Q ss_pred             -----ccCcEEEEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHh
Q 037045           77 -----NDRSYVLFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVV  143 (424)
Q Consensus        77 -----~~~~~LlvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~  143 (424)
                           .+++.++|+|+++...  ..+.+  .+.....+..+|++|.......    .....+++.+++.++..+++.+.+
T Consensus       112 ~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~  191 (373)
T 1jr3_A          112 QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL  191 (373)
T ss_dssp             TSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred             hhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHH
Confidence                 2457899999998753  23333  1112234566777765443222    556789999999999999998876


Q ss_pred             cccCCCCccHHHHHHHHHHhcCCchHHHHHHHH
Q 037045          144 GVHLKKYPDIELVADSIVKECGGMPYMLKLIGK  176 (424)
Q Consensus       144 ~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~  176 (424)
                      ....  ....++.+..|++.++|.|..+.....
T Consensus       192 ~~~~--~~~~~~a~~~l~~~~~G~~r~~~~~l~  222 (373)
T 1jr3_A          192 NEEH--IAHEPRALQLLARAAEGSLRDALSLTD  222 (373)
T ss_dssp             HHHT--CCBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred             HHcC--CCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence            4431  122245678899999999987765543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.50  E-value=5.6e-06  Score=76.26  Aligned_cols=155  Identities=14%  Similarity=0.129  Sum_probs=88.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +-|.|+|++|+|||+||+.+++... ..   ..+.++.+.-.+              .............+...-..++.
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~~--------------~~~g~~~~~~~~lf~~a~~~~~~  107 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLVS--------------KWLGESEKLVKNLFQLARENKPS  107 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSCC--------------SSCCSCHHHHHHHHHHHHHTSSE
T ss_pred             ceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHHh--------------hhhhHHHHHHHHHHHHHHhcCCc
Confidence            4588999999999999999999762 11   223344332110              00011111111112222235678


Q ss_pred             EEEEcCCCCcc-------------hhhhh-----ccCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHHH
Q 037045           82 VLFLDGVSSEI-------------NFKEI-----GMHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKKL  138 (424)
Q Consensus        82 LlvlD~~~~~~-------------~~~~~-----~~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~l  138 (424)
                      +|+||+++...             ....+     ++.....+..||.||.......     .-...+.+...+.++..++
T Consensus       108 vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~i  187 (322)
T 1xwi_A          108 IIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAM  187 (322)
T ss_dssp             EEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHH
T ss_pred             EEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHH
Confidence            99999998651             01111     1111223444555554432222     4446788888999999999


Q ss_pred             HHHHhcccCCCCccHHHHHHHHHHhcCCc-hHHHHHHHH
Q 037045          139 FWEVVGVHLKKYPDIELVADSIVKECGGM-PYMLKLIGK  176 (424)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~I~~~~~g~-Plai~~~a~  176 (424)
                      +...+.....  ...+.....|++.+.|+ +..|..++.
T Consensus       188 l~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~~  224 (322)
T 1xwi_A          188 FKLHLGTTQN--SLTEADFRELGRKTDGYSGADISIIVR  224 (322)
T ss_dssp             HHHHHTTCCB--CCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             HHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            9888754321  11245678899999987 555666554

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.49  E-value=3.5e-06  Score=75.71  Aligned_cols=168  Identities=11%  Similarity=0.076  Sum_probs=86.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -+.|+|++|+|||++|+.+++..  ...   .+.++.+...            .+.. ...........+......+..+
T Consensus        66 ~vLl~G~~GtGKT~la~~ia~~~--~~~---~~~i~~~~~~------------~g~~-~~~~~~~~~~~~~~~~~~~~~v  127 (272)
T 1d2n_A           66 SVLLEGPPHSGKTALAAKIAEES--NFP---FIKICSPDKM------------IGFS-ETAKCQAMKKIFDDAYKSQLSC  127 (272)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH--TCS---EEEEECGGGC------------TTCC-HHHHHHHHHHHHHHHHTSSEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHh--CCC---EEEEeCHHHh------------cCCc-hHHHHHHHHHHHHHHHhcCCcE
Confidence            57899999999999999999986  222   2233322210            0000 0000011112222223356789


Q ss_pred             EEEcCCCCc----------c--hhhhh-c-cC---CCCCCcEEEEEecchhhhc------ccCceEEecCCCH-HHHHHH
Q 037045           83 LFLDGVSSE----------I--NFKEI-G-MH---DDHGRGKVVFACRSREFCW------QADGVIHVQQLCQ-REAKKL  138 (424)
Q Consensus        83 lvlD~~~~~----------~--~~~~~-~-~~---~~~~~~~iiittr~~~~~~------~~~~~~~l~~l~~-~~~~~l  138 (424)
                      |+||+++..          .  .++.+ . +.   .......||.||.......      .....+.+.+++. ++..++
T Consensus       128 l~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i  207 (272)
T 1d2n_A          128 VVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEA  207 (272)
T ss_dssp             EEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHH
T ss_pred             EEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHH
Confidence            999998653          0  11222 1 11   1222334555666553211      3356788888888 666666


Q ss_pred             HHHHhcccCCCCccHHHHHHHHHHhcCCc------hHHHHHHHHHHhCCcchHHHHHHHHHhhh
Q 037045          139 FWEVVGVHLKKYPDIELVADSIVKECGGM------PYMLKLIGKELANQSEVAIWRATADELRL  196 (424)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~I~~~~~g~------Plai~~~a~~l~~~~~~~~~~~~~~~l~~  196 (424)
                      +.+...    .   .++....+++.+.|.      ..++..+-.. ........+.++++.+..
T Consensus       208 ~~~~~~----~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a-~~~~~~~~~~~~~~~l~~  263 (272)
T 1d2n_A          208 LELLGN----F---KDKERTTIAQQVKGKKVWIGIKKLLMLIEMS-LQMDPEYRVRKFLALLRE  263 (272)
T ss_dssp             HHHHTC----S---CHHHHHHHHHHHTTSEEEECHHHHHHHHHHH-TTSCGGGHHHHHHHHHHH
T ss_pred             HHhcCC----C---CHHHHHHHHHHhcCCCccccHHHHHHHHHHH-hhhchHHHHHHHHHHHHH
Confidence            555321    1   144577788888873      3333333322 223344566666665555

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.49  E-value=2.4e-07  Score=81.50  Aligned_cols=146  Identities=12%  Similarity=0.125  Sum_probs=89.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +.+.|+|++|+||||+|+.+++....  ....+.|+++......      +             .+..    +.+ .+..
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~~~~~--~~~~~~~~~~~~~~~~------~-------------~~~~----~~~-~~~~  106 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACARANE--LERRSFYIPLGIHASI------S-------------TALL----EGL-EQFD  106 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEGGGGGGS------C-------------GGGG----TTG-GGSS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEHHHHHHH------H-------------HHHH----Hhc-cCCC
Confidence            46889999999999999999998742  2334677776442110      0             0000    011 3467


Q ss_pred             EEEEcCCCCcch----hhhh-c-cC-CCCCCc-EEEEEecchhh----h-c------ccCceEEecCCCHHHHHHHHHHH
Q 037045           82 VLFLDGVSSEIN----FKEI-G-MH-DDHGRG-KVVFACRSREF----C-W------QADGVIHVQQLCQREAKKLFWEV  142 (424)
Q Consensus        82 LlvlD~~~~~~~----~~~~-~-~~-~~~~~~-~iiittr~~~~----~-~------~~~~~~~l~~l~~~~~~~l~~~~  142 (424)
                      +||+|+++....    .+.+ . +. ....+. .+|+||+....    . .      .....+++.+++.++..+++...
T Consensus       107 vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~  186 (242)
T 3bos_A          107 LICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRR  186 (242)
T ss_dssp             EEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHH
T ss_pred             EEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHH
Confidence            899999876532    2222 1 00 011222 47777764331    1 1      12278999999999999999887


Q ss_pred             hcccCCCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045          143 VGVHLKKYPDIELVADSIVKECGGMPYMLKLIG  175 (424)
Q Consensus       143 ~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a  175 (424)
                      +....  ....++....+++.+.|.+..+..+.
T Consensus       187 ~~~~~--~~~~~~~~~~l~~~~~g~~r~l~~~l  217 (242)
T 3bos_A          187 AAMRG--LQLPEDVGRFLLNRMARDLRTLFDVL  217 (242)
T ss_dssp             HHHTT--CCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHcC--CCCCHHHHHHHHHHccCCHHHHHHHH
Confidence            75331  12235567889999999887665444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.47  E-value=1.6e-07  Score=94.28  Aligned_cols=123  Identities=14%  Similarity=0.045  Sum_probs=71.8

Q ss_pred             cceeEEEeeccCCCCCC-----C-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC----CcCChhhhccc
Q 037045          263 AHTKRLSLFGFPSSTLP-----D-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI----GCLPPSISRLI  332 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~-----~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~----~~~p~~~~~l~  332 (424)
                      ++|+.|++++|.++...     . ...|++|+.|++++|.+.+++.. +..+++|+.|+++....    ...+..+..++
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~  270 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR  270 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred             CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH-HhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence            78889999888886322     1 25678899999998888776643 66778888888764321    12223344455


Q ss_pred             ccceeeecccccccccCChhhhccCCCCEEEecCCcCc--ccchhhhcCCCCCEeeec
Q 037045          333 NLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQ--CLPSEIGQLIELKYLRVS  388 (424)
Q Consensus       333 ~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~l~l~  388 (424)
                      +|+.+++  .......+|..+..+++|+.|++++|.++  .++..+..+++|++|+++
T Consensus       271 ~L~~L~l--~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          271 KLCRLGL--SYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             TCCEEEE--TTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             cccccCc--cccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            5555555  33334444555555555555555555533  121223445555555554

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.46  E-value=1e-05  Score=72.12  Aligned_cols=154  Identities=10%  Similarity=0.107  Sum_probs=84.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -+.|+|++|+|||++|+.+++...  ..   .+.+++....+.              ............+.........+
T Consensus        41 ~vll~G~~GtGKT~la~~la~~~~--~~---~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~a~~~~~~v  101 (262)
T 2qz4_A           41 GALLLGPPGCGKTLLAKAVATEAQ--VP---FLAMAGAEFVEV--------------IGGLGAARVRSLFKEARARAPCI  101 (262)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHT--CC---EEEEETTTTSSS--------------STTHHHHHHHHHHHHHHHTCSEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC--CC---EEEechHHHHhh--------------ccChhHHHHHHHHHHHHhcCCeE
Confidence            478999999999999999999872  22   344444332110              00000111112222222345789


Q ss_pred             EEEcCCCCcc-----------------hhhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHH
Q 037045           83 LFLDGVSSEI-----------------NFKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQRE  134 (424)
Q Consensus        83 lvlD~~~~~~-----------------~~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~  134 (424)
                      |+||+++...                 .+..+  .+.  ....+..+|.||.......       .-...+.++..+.++
T Consensus       102 l~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~  181 (262)
T 2qz4_A          102 VYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE  181 (262)
T ss_dssp             EEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHH
T ss_pred             EEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHH
Confidence            9999998651                 11112  011  1223445666665433221       233677888999999


Q ss_pred             HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchH-HHHHHHH
Q 037045          135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPY-MLKLIGK  176 (424)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Pl-ai~~~a~  176 (424)
                      ..+++...+.... ...........+++.+.|++- .|..+..
T Consensus       182 r~~il~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~l~~l~~  223 (262)
T 2qz4_A          182 RREIFEQHLKSLK-LTQSSTFYSQRLAELTPGFSGADIANICN  223 (262)
T ss_dssp             HHHHHHHHHHHTT-CCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-CCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence            9999988775432 222223345778888888753 5554443

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=98.39  E-value=5.1e-06  Score=76.59  Aligned_cols=148  Identities=17%  Similarity=0.152  Sum_probs=91.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      .+.|+|++|+|||++|+.+++...  .   ..+++++.......++...+    .                .. ..+..+
T Consensus        40 ~vll~G~~GtGKT~la~~i~~~~~--~---~~~~~~~~~~~~~~~l~~~l----~----------------~~-~~~~~~   93 (324)
T 1hqc_A           40 HLLLFGPPGLGKTTLAHVIAHELG--V---NLRVTSGPAIEKPGDLAAIL----A----------------NS-LEEGDI   93 (324)
T ss_dssp             CCEEECCTTCCCHHHHHHHHHHHT--C---CEEEECTTTCCSHHHHHHHH----T----------------TT-CCTTCE
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC--C---CEEEEeccccCChHHHHHHH----H----------------Hh-ccCCCE
Confidence            578999999999999999999772  2   23455544433322222111    1                00 135678


Q ss_pred             EEEcCCCCcch--hhhh-------ccC---C----------CCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHH
Q 037045           83 LFLDGVSSEIN--FKEI-------GMH---D----------DHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREA  135 (424)
Q Consensus        83 lvlD~~~~~~~--~~~~-------~~~---~----------~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~  135 (424)
                      |+||+++....  .+.+       .+.   .          ...+..+|.+|.......     .-...+.+.+++.++.
T Consensus        94 l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~  173 (324)
T 1hqc_A           94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEEL  173 (324)
T ss_dssp             EEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHH
T ss_pred             EEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHH
Confidence            99999987631  1111       000   0          012345666665433222     2235889999999999


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHH
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKEL  178 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l  178 (424)
                      .+++.+.+....  ....++....+++.+.|+|..+..+...+
T Consensus       174 ~~~l~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~  214 (324)
T 1hqc_A          174 AQGVMRDARLLG--VRITEEAALEIGRRSRGTMRVAKRLFRRV  214 (324)
T ss_dssp             HHHHHHHHHTTT--CCCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--CCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            999988875432  12335677889999999998887766554

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.39  E-value=7.6e-06  Score=75.44  Aligned_cols=153  Identities=14%  Similarity=0.128  Sum_probs=87.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -+.|+|++|+|||++|+.+++..  ...   .+.++.+.      +.    ...    ...........+...-..+..+
T Consensus        53 ~vLl~GppGtGKT~la~aia~~~--~~~---~~~v~~~~------l~----~~~----~g~~~~~~~~~f~~a~~~~~~v  113 (322)
T 3eie_A           53 GILLYGPPGTGKSYLAKAVATEA--NST---FFSVSSSD------LV----SKW----MGESEKLVKQLFAMARENKPSI  113 (322)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHH--TCE---EEEEEHHH------HH----TTT----GGGHHHHHHHHHHHHHHTSSEE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH--CCC---EEEEchHH------Hh----hcc----cchHHHHHHHHHHHHHhcCCeE
Confidence            48899999999999999999987  222   23333211      11    000    0001111111122222346789


Q ss_pred             EEEcCCCCcch-------------hhhh-----ccCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHHHH
Q 037045           83 LFLDGVSSEIN-------------FKEI-----GMHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKKLF  139 (424)
Q Consensus        83 lvlD~~~~~~~-------------~~~~-----~~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~l~  139 (424)
                      |+||+++....             ...+     ++.....+..||.||.......     .-...+.+...+.++..+++
T Consensus       114 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il  193 (322)
T 3eie_A          114 IFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMF  193 (322)
T ss_dssp             EEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHH
T ss_pred             EEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHH
Confidence            99999985421             1222     1112333445555665533322     44567788889999999999


Q ss_pred             HHHhcccCCCCccHHHHHHHHHHhcCCc-hHHHHHHHH
Q 037045          140 WEVVGVHLKKYPDIELVADSIVKECGGM-PYMLKLIGK  176 (424)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~I~~~~~g~-Plai~~~a~  176 (424)
                      ...+....  ....+.....|++.+.|+ +-.|..++.
T Consensus       194 ~~~~~~~~--~~~~~~~l~~la~~t~g~sg~di~~l~~  229 (322)
T 3eie_A          194 EINVGDTP--CVLTKEDYRTLGAMTEGYSGSDIAVVVK  229 (322)
T ss_dssp             HHHHTTCC--CCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred             HHHhccCC--CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            98886542  122244677899999884 556655553

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.36  E-value=4.7e-06  Score=75.34  Aligned_cols=151  Identities=17%  Similarity=0.178  Sum_probs=83.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -+.|+|++|+|||++|+.+++...  ..   .+.+....-..              .............+.........+
T Consensus        53 ~~ll~G~~GtGKT~la~~la~~~~--~~---~~~v~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~v  113 (285)
T 3h4m_A           53 GILLYGPPGTGKTLLAKAVATETN--AT---FIRVVGSELVK--------------KFIGEGASLVKDIFKLAKEKAPSI  113 (285)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHHTT--CE---EEEEEGGGGCC--------------CSTTHHHHHHHHHHHHHHHTCSEE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhC--CC---EEEEehHHHHH--------------hccchHHHHHHHHHHHHHHcCCeE
Confidence            578999999999999999998862  22   23333322110              000000011111222222345789


Q ss_pred             EEEcCCCCcc----------------hhhhh--cc--CCCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHH
Q 037045           83 LFLDGVSSEI----------------NFKEI--GM--HDDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREA  135 (424)
Q Consensus        83 lvlD~~~~~~----------------~~~~~--~~--~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~  135 (424)
                      |+||+++...                .+..+  .+  .....+..+|.||.......       .....+.+...+.++.
T Consensus       114 l~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r  193 (285)
T 3h4m_A          114 IFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGR  193 (285)
T ss_dssp             EEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHH
T ss_pred             EEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHH
Confidence            9999997531                11111  00  12233556777776543333       2234788999999999


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCC-chHHHHHHH
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGG-MPYMLKLIG  175 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g-~Plai~~~a  175 (424)
                      .+++...........   +.....+++.+.| .|..|..+.
T Consensus       194 ~~il~~~~~~~~~~~---~~~~~~l~~~~~g~~~~~i~~l~  231 (285)
T 3h4m_A          194 LEILKIHTRKMNLAE---DVNLEEIAKMTEGCVGAELKAIC  231 (285)
T ss_dssp             HHHHHHHHTTSCBCT---TCCHHHHHHHCTTCCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCC---cCCHHHHHHHcCCCCHHHHHHHH
Confidence            999998876542111   1124567777777 454555443

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.35  E-value=8.1e-06  Score=78.49  Aligned_cols=150  Identities=17%  Similarity=0.229  Sum_probs=87.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRS   80 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~   80 (424)
                      +.+.|+|++|+||||+|+.+++..  ...|     +.++.. ....++. .++....               .....+++
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~--~~~f-----~~l~a~~~~~~~ir-~~~~~a~---------------~~~~~~~~  107 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYA--NADV-----ERISAVTSGVKEIR-EAIERAR---------------QNRNAGRR  107 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHT--TCEE-----EEEETTTCCHHHHH-HHHHHHH---------------HHHHTTCC
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHh--CCCe-----EEEEeccCCHHHHH-HHHHHHH---------------HhhhcCCC
Confidence            358899999999999999999987  2322     222221 2222222 2211100               01113578


Q ss_pred             EEEEEcCCCCcc--hhhhhccC-CCCCCcEEEE-Eecchhh--hc---ccCceEEecCCCHHHHHHHHHHHhcccC----
Q 037045           81 YVLFLDGVSSEI--NFKEIGMH-DDHGRGKVVF-ACRSREF--CW---QADGVIHVQQLCQREAKKLFWEVVGVHL----  147 (424)
Q Consensus        81 ~LlvlD~~~~~~--~~~~~~~~-~~~~~~~iii-ttr~~~~--~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~----  147 (424)
                      .+|+||+++...  ..+.+ ++ -......+|. ||.+...  ..   ....++.+++++.++..+++.+.+....    
T Consensus       108 ~iLfIDEI~~l~~~~q~~L-L~~le~~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~  186 (447)
T 3pvs_A          108 TILFVDEVHRFNKSQQDAF-LPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYG  186 (447)
T ss_dssp             EEEEEETTTCC------CC-HHHHHTTSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSST
T ss_pred             cEEEEeChhhhCHHHHHHH-HHHHhcCceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhc
Confidence            899999998763  22222 11 1112334444 4444321  11   5566889999999999999998876421    


Q ss_pred             -CCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045          148 -KKYPDIELVADSIVKECGGMPYMLKLIG  175 (424)
Q Consensus       148 -~~~~~~~~~~~~I~~~~~g~Plai~~~a  175 (424)
                       ......++....|++.+.|.+..+.-+.
T Consensus       187 ~~~~~i~~~al~~L~~~~~Gd~R~lln~L  215 (447)
T 3pvs_A          187 GQDIVLPDETRRAIAELVNGDARRALNTL  215 (447)
T ss_dssp             TSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             cccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence             1222345677889999999886655443

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.35  E-value=1.8e-05  Score=73.86  Aligned_cols=153  Identities=15%  Similarity=0.130  Sum_probs=86.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -|.|+|++|+|||+||+.+++..  ...   .+.++.+      ++..    .    ............+...-..+..+
T Consensus        86 ~iLL~GppGtGKT~la~ala~~~--~~~---~~~v~~~------~l~~----~----~~g~~~~~~~~~f~~a~~~~~~v  146 (355)
T 2qp9_X           86 GILLYGPPGTGKSYLAKAVATEA--NST---FFSVSSS------DLVS----K----WMGESEKLVKQLFAMARENKPSI  146 (355)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHHH--TCE---EEEEEHH------HHHS----C----C---CHHHHHHHHHHHHHTSSEE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh--CCC---EEEeeHH------HHhh----h----hcchHHHHHHHHHHHHHHcCCeE
Confidence            37899999999999999999987  222   2333322      1110    0    00111111111222222346899


Q ss_pred             EEEcCCCCcch-------------hhhh-----ccCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHHHH
Q 037045           83 LFLDGVSSEIN-------------FKEI-----GMHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKKLF  139 (424)
Q Consensus        83 lvlD~~~~~~~-------------~~~~-----~~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~l~  139 (424)
                      |+||+++....             ...+     ++.....+..||.||.......     .-...+.+...+.++..+++
T Consensus       147 l~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il  226 (355)
T 2qp9_X          147 IFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMF  226 (355)
T ss_dssp             EEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred             EEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHH
Confidence            99999986421             1222     1111233445555665443222     44567888999999999999


Q ss_pred             HHHhcccCCCCccHHHHHHHHHHhcCC-chHHHHHHHH
Q 037045          140 WEVVGVHLKKYPDIELVADSIVKECGG-MPYMLKLIGK  176 (424)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~I~~~~~g-~Plai~~~a~  176 (424)
                      ...+.....  ...+.....|++.+.| .+..|..++.
T Consensus       227 ~~~l~~~~~--~~~~~~l~~la~~t~G~sg~dl~~l~~  262 (355)
T 2qp9_X          227 EINVGDTPS--VLTKEDYRTLGAMTEGYSGSDIAVVVK  262 (355)
T ss_dssp             HHHHTTSCB--CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHhhCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            888765421  1124456789999988 4555665553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.35  E-value=1.6e-07  Score=94.37  Aligned_cols=126  Identities=20%  Similarity=0.166  Sum_probs=64.0

Q ss_pred             cceeEEEeeccCCCCC-----CCC-cCcccccEEEccCCCCCCCChHH----hcccCCCcEEEccCCC-CCcCChhhhcc
Q 037045          263 AHTKRLSLFGFPSSTL-----PDM-PNCCEILTLILEGKRLEKLPTSF----FDYMCHLQLLDLHETN-IGCLPPSISRL  331 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~-----~~~-~~~~~L~~L~l~~~~l~~~~~~~----~~~~~~L~~L~l~~~~-~~~~p~~~~~l  331 (424)
                      ++|+.|++++|.+...     +.. ..+++|+.|++++|. ..+....    ...+++|++|++++|. +..+|..+..+
T Consensus       156 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~  234 (594)
T 2p1m_B          156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA  234 (594)
T ss_dssp             TTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred             CCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence            5666666666654431     111 355667777776665 2222211    2334667777777662 23355555566


Q ss_pred             cccceeeeccccc------------------------------ccccCChhhhccCCCCEEEecCCcCcc--cchhhhcC
Q 037045          332 INLNALFLRSSCS------------------------------LLLQLPAEIGRLQKLEILDVSHTKVQC--LPSEIGQL  379 (424)
Q Consensus       332 ~~L~~l~l~~~~~------------------------------~~~~lp~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l  379 (424)
                      ++|+.+++. .+.                              ....+|..+..+++|+.|++++|.++.  ++..+.++
T Consensus       235 ~~L~~L~l~-~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~  313 (594)
T 2p1m_B          235 PQLEELGTG-GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC  313 (594)
T ss_dssp             TTCSEEECS-BCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred             CcceEcccc-cccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence            666666541 110                              011223333345666666666666441  22224466


Q ss_pred             CCCCEeeeccc
Q 037045          380 IELKYLRVSRV  390 (424)
Q Consensus       380 ~~L~~l~l~~n  390 (424)
                      ++|++|++++|
T Consensus       314 ~~L~~L~l~~~  324 (594)
T 2p1m_B          314 PKLQRLWVLDY  324 (594)
T ss_dssp             TTCCEEEEEGG
T ss_pred             CCcCEEeCcCc
Confidence            66666666665

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.35  E-value=5.5e-06  Score=76.47  Aligned_cols=149  Identities=14%  Similarity=0.143  Sum_probs=88.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      .+.|+|++|+||||||+.+++.....  -..++++++.      ++...+...+...    .    ...+.+.+ .+..+
T Consensus        39 ~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~------~~~~~~~~~~~~~----~----~~~~~~~~-~~~~v  101 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD------DFAQAMVEHLKKG----T----INEFRNMY-KSVDL  101 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH------HHHHHHHHHHHHT----C----HHHHHHHH-HTCSE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH------HHHHHHHHHHHcC----c----HHHHHHHh-cCCCE
Confidence            58899999999999999999987422  2235565543      2333333333211    0    11122222 23679


Q ss_pred             EEEcCCCCcch----hhhh--ccC-CCCCCcEEEEEecchhh-----hc------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045           83 LFLDGVSSEIN----FKEI--GMH-DDHGRGKVVFACRSREF-----CW------QADGVIHVQQLCQREAKKLFWEVVG  144 (424)
Q Consensus        83 lvlD~~~~~~~----~~~~--~~~-~~~~~~~iiittr~~~~-----~~------~~~~~~~l~~l~~~~~~~l~~~~~~  144 (424)
                      |+||+++....    .+.+  .+. ....+..+|+|+.....     ..      .....+++++ +.++..+++...+.
T Consensus       102 L~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~  180 (324)
T 1l8q_A          102 LLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLK  180 (324)
T ss_dssp             EEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred             EEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHH
Confidence            99999987542    1222  111 12345678888764322     11      2336789999 99999999988875


Q ss_pred             ccCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045          145 VHLKKYPDIELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       145 ~~~~~~~~~~~~~~~I~~~~~g~Plai~  172 (424)
                      ...  ....++....|++.+ |....+.
T Consensus       181 ~~~--~~l~~~~l~~l~~~~-g~~r~l~  205 (324)
T 1l8q_A          181 EFN--LELRKEVIDYLLENT-KNVREIE  205 (324)
T ss_dssp             HTT--CCCCHHHHHHHHHHC-SSHHHHH
T ss_pred             hcC--CCCCHHHHHHHHHhC-CCHHHHH
Confidence            431  122355678888888 8775443

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.31  E-value=4.8e-06  Score=77.75  Aligned_cols=165  Identities=13%  Similarity=0.071  Sum_probs=91.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCC-ceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRF-DIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      -+.|+|++|+||||+|+.+++.......+ ..+..++.+.......+.. ....+...........   .....-.+..-
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~  135 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVRE-KVKNFARLTVSKPSKH---DLENYPCPPYK  135 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTT-HHHHHHHSCCCCCCTT---HHHHSCCCSCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHH-HHHHHhhhcccccchh---hcccCCCCCce
Confidence            37899999999999999999885311011 1234444443333332222 2221111100000000   00111123557


Q ss_pred             EEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchhhh-c---ccCceEEecCCCHHHHHHHHHHHhcccCCCCccH
Q 037045           82 VLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSREFC-W---QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDI  153 (424)
Q Consensus        82 LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~~~-~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~  153 (424)
                      ++++|+++....  .+.+  .+......+++|++|...... .   .....+.+.+++.++..+.+...+....  ....
T Consensus       136 vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~--~~i~  213 (353)
T 1sxj_D          136 IIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQEN--VKCD  213 (353)
T ss_dssp             EEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTT--CCCC
T ss_pred             EEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhC--CCCC
Confidence            999999887532  2222  111223456677766544322 2   4455889999999999999988775431  1223


Q ss_pred             HHHHHHHHHhcCCchHHHHH
Q 037045          154 ELVADSIVKECGGMPYMLKL  173 (424)
Q Consensus       154 ~~~~~~I~~~~~g~Plai~~  173 (424)
                      ++....|++.++|.|..+..
T Consensus       214 ~~~l~~l~~~~~G~~r~~~~  233 (353)
T 1sxj_D          214 DGVLERILDISAGDLRRGIT  233 (353)
T ss_dssp             HHHHHHHHHHTSSCHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHH
Confidence            56788899999999976443

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.29  E-value=1.9e-06  Score=84.81  Aligned_cols=162  Identities=15%  Similarity=0.177  Sum_probs=89.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHH--hccC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKE--LNDR   79 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~--l~~~   79 (424)
                      +.+.|+|++|+||||+|+.+++...    + .++.++++...+... ....+......   ...........+.  ..++
T Consensus        78 ~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~s~~~~~~~-~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~  148 (516)
T 1sxj_A           78 RAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNASDVRSKTL-LNAGVKNALDN---MSVVGYFKHNEEAQNLNGK  148 (516)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECTTSCCCHHH-HHHTGGGGTTB---CCSTTTTTC----CCSSTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeCCCcchHHH-HHHHHHHHhcc---ccHHHHHhhhhhhhhccCC
Confidence            4789999999999999999999871    2 244555555444332 22221111111   0010000000001  1246


Q ss_pred             cEEEEEcCCCCcch-----hhhh-ccCCCCCCcEEEEEecchh---hhc--ccCceEEecCCCHHHHHHHHHHHhcccCC
Q 037045           80 SYVLFLDGVSSEIN-----FKEI-GMHDDHGRGKVVFACRSRE---FCW--QADGVIHVQQLCQREAKKLFWEVVGVHLK  148 (424)
Q Consensus        80 ~~LlvlD~~~~~~~-----~~~~-~~~~~~~~~~iiittr~~~---~~~--~~~~~~~l~~l~~~~~~~l~~~~~~~~~~  148 (424)
                      +.+|+||+++....     +..+ .+. ...+..+|+++....   ...  .....+.+.+++.++..+++...+.....
T Consensus       149 ~~vliIDEid~l~~~~~~~l~~L~~~l-~~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~  227 (516)
T 1sxj_A          149 HFVIIMDEVDGMSGGDRGGVGQLAQFC-RKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF  227 (516)
T ss_dssp             SEEEEECSGGGCCTTSTTHHHHHHHHH-HHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCccchhhHHHHHHHHHHH-HhcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            78999999987532     1222 111 112344555554322   112  44567899999999999999887654311


Q ss_pred             CCccHHHHHHHHHHhcCCch-HHHHHHH
Q 037045          149 KYPDIELVADSIVKECGGMP-YMLKLIG  175 (424)
Q Consensus       149 ~~~~~~~~~~~I~~~~~g~P-lai~~~a  175 (424)
                      .  ..++....|++.++|.+ .++..+.
T Consensus       228 ~--i~~~~l~~la~~s~GdiR~~i~~L~  253 (516)
T 1sxj_A          228 K--LDPNVIDRLIQTTRGDIRQVINLLS  253 (516)
T ss_dssp             C--CCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred             C--CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence            1  11335778999999955 4454443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.29  E-value=1.1e-07  Score=95.69  Aligned_cols=123  Identities=16%  Similarity=0.160  Sum_probs=57.3

Q ss_pred             cceeEEEeeccCCCC--CCCCc-CcccccEEEccCC-CCCCC-ChHHhcccCCCcEEEccCCCCCc-CChh----hhccc
Q 037045          263 AHTKRLSLFGFPSST--LPDMP-NCCEILTLILEGK-RLEKL-PTSFFDYMCHLQLLDLHETNIGC-LPPS----ISRLI  332 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~~~-~l~~~-~~~~~~~~~~L~~L~l~~~~~~~-~p~~----~~~l~  332 (424)
                      ++|+.|+++++.+..  +..+. .|++|+.|++++| .++.. .......+++|++|++++|.+.. .+..    ...++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            566666666665543  11222 4566666666665 33321 22223345666666666665421 1111    22444


Q ss_pred             ccceeeecccccc--cc--cCChhhhccCCCCEEEecCCc-CcccchhhhcCCCCCEeee
Q 037045          333 NLNALFLRSSCSL--LL--QLPAEIGRLQKLEILDVSHTK-VQCLPSEIGQLIELKYLRV  387 (424)
Q Consensus       333 ~L~~l~l~~~~~~--~~--~lp~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~l~l  387 (424)
                      +|++|++  .++.  +.  .++.-...+++|+.|++++|. +..+|..+.++++|+.|.+
T Consensus       185 ~L~~L~l--~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l  242 (594)
T 2p1m_B          185 SLVSLNI--SCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT  242 (594)
T ss_dssp             CCCEEEC--TTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred             cCcEEEe--cccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence            6666666  3332  11  111222334566666665552 3344444444444555443

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=98.29  E-value=8.9e-06  Score=76.45  Aligned_cols=169  Identities=12%  Similarity=0.045  Sum_probs=90.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEec----cCCCHHHHHHHHHHHhccc------------------
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENIN----TDGNIRDIQEIILERLKVN------------------   59 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~----~~~~~~~~~~~i~~~l~~~------------------   59 (424)
                      +.+.|+|++|+|||++|+.+++.......|   +.+...    ..........+.+......                  
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~  147 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVI  147 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhh
Confidence            368999999999999999999998421122   222221    1233334444333331110                  


Q ss_pred             -------------ccccChhHHHHHHHHHh-----ccC----cEEEEEcCCCCcc--hhhhh-ccCCCCCCcEEEEEecc
Q 037045           60 -------------AKELNNDLRADIISKEL-----NDR----SYVLFLDGVSSEI--NFKEI-GMHDDHGRGKVVFACRS  114 (424)
Q Consensus        60 -------------~~~~~~~~~~~~l~~~l-----~~~----~~LlvlD~~~~~~--~~~~~-~~~~~~~~~~iiittr~  114 (424)
                                   ............+.+..     .++    +.+|+||+++...  ..+.+ ..........++++|..
T Consensus       148 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~ii~t~~  227 (368)
T 3uk6_A          148 NSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNR  227 (368)
T ss_dssp             TC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCEEEEEESC
T ss_pred             hcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHHHHHHHHHhhCcCCCeeeeeccc
Confidence                         00000122222222211     122    3599999998763  22222 11112222234444431


Q ss_pred             -------------hhhhc---ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcC-CchHHHHHHH
Q 037045          115 -------------REFCW---QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECG-GMPYMLKLIG  175 (424)
Q Consensus       115 -------------~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~-g~Plai~~~a  175 (424)
                                   ..+..   .....+.+.+++.++..+++.+.+....  ....++....|++.+. |.|..+..+.
T Consensus       228 ~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~--~~~~~~~l~~l~~~~~~G~~r~~~~ll  303 (368)
T 3uk6_A          228 GITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEED--VEMSEDAYTVLTRIGLETSLRYAIQLI  303 (368)
T ss_dssp             SEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             ceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence                         11111   4445589999999999999998876531  2233567788899887 7776554433

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=98.28  E-value=1.8e-05  Score=73.26  Aligned_cols=147  Identities=11%  Similarity=0.051  Sum_probs=87.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCC--------------------CCceEEEEEec---cCCCHHHHHHHHHHHhccc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESR--------------------RFDIIFWENIN---TDGNIRDIQEIILERLKVN   59 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~---~~~~~~~~~~~i~~~l~~~   59 (424)
                      .+.++|+.|+|||++|+.+++...-..                    +++ ..++...   .....+.+ +++...+...
T Consensus        26 a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~~~~i~~i-r~l~~~~~~~  103 (334)
T 1a5t_A           26 ALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKNTLGVDAV-REVTEKLNEH  103 (334)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCSSBCHHHH-HHHHHHTTSC
T ss_pred             eEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCCCCCHHHH-HHHHHHHhhc
Confidence            578999999999999999998864211                    122 2222221   11111111 1122211110


Q ss_pred             ccccChhHHHHHHHHHhccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchh-hhc---ccCceEEecCCC
Q 037045           60 AKELNNDLRADIISKELNDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLC  131 (424)
Q Consensus        60 ~~~~~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~  131 (424)
                      .               ..+++-++|+|+++....  .+.+  .+-....++.+|++|.... +.+   +....+++.+++
T Consensus       104 ~---------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~  168 (334)
T 1a5t_A          104 A---------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPP  168 (334)
T ss_dssp             C---------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred             c---------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCC
Confidence            0               124578999999987642  2222  1112234566666665543 333   677789999999


Q ss_pred             HHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHH
Q 037045          132 QREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKL  173 (424)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~  173 (424)
                      +++..+.+.+...       ..++.+..+++.++|.|..+..
T Consensus       169 ~~~~~~~L~~~~~-------~~~~~~~~l~~~s~G~~r~a~~  203 (334)
T 1a5t_A          169 EQYAVTWLSREVT-------MSQDALLAALRLSAGSPGAALA  203 (334)
T ss_dssp             HHHHHHHHHHHCC-------CCHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHhcC-------CCHHHHHHHHHHcCCCHHHHHH
Confidence            9999999987751       1134567899999999966543

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.28  E-value=1.5e-05  Score=74.51  Aligned_cols=137  Identities=13%  Similarity=0.189  Sum_probs=80.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh----ccC
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL----NDR   79 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~   79 (424)
                      |.++|++|+|||.||+.++...  ...|   +.++.+.-.+                  .-.++....+++.+    ...
T Consensus       185 vLL~GPPGTGKTllAkAiA~e~--~~~f---~~v~~s~l~s------------------k~vGese~~vr~lF~~Ar~~a  241 (405)
T 4b4t_J          185 VILYGPPGTGKTLLARAVAHHT--DCKF---IRVSGAELVQ------------------KYIGEGSRMVRELFVMAREHA  241 (405)
T ss_dssp             EEEESCSSSSHHHHHHHHHHHH--TCEE---EEEEGGGGSC------------------SSTTHHHHHHHHHHHHHHHTC
T ss_pred             eEEeCCCCCCHHHHHHHHHHhh--CCCc---eEEEhHHhhc------------------cccchHHHHHHHHHHHHHHhC
Confidence            6799999999999999999988  3333   3344332111                  01111122222222    346


Q ss_pred             cEEEEEcCCCCcc----------------hhhhh-----ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCC
Q 037045           80 SYVLFLDGVSSEI----------------NFKEI-----GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLC  131 (424)
Q Consensus        80 ~~LlvlD~~~~~~----------------~~~~~-----~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~  131 (424)
                      +++|+||+++...                .+..+     ++ ....+..||.||.......       .-+..++++.-+
T Consensus       242 P~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~-~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd  320 (405)
T 4b4t_J          242 PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF-ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPS  320 (405)
T ss_dssp             SEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT-TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCC
T ss_pred             CceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc-CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcC
Confidence            8999999998531                01111     11 2233345555665433322       567788999889


Q ss_pred             HHHHHHHHHHHhcccC-CCCccHHHHHHHHHHhcCCch
Q 037045          132 QREAKKLFWEVVGVHL-KKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       132 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      .++..++|+.+..+.. ....+    ...|++.+.|+-
T Consensus       321 ~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S  354 (405)
T 4b4t_J          321 VAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS  354 (405)
T ss_dssp             HHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred             HHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence            9999999988775542 11222    456888888754

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.28  E-value=1.9e-05  Score=73.84  Aligned_cols=154  Identities=16%  Similarity=0.113  Sum_probs=85.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +-|.|+|++|+|||++|+.+++..  ..   ..+.++++.-.+.              ............+...-..++.
T Consensus       118 ~~vLl~GppGtGKT~la~aia~~~--~~---~~~~i~~~~l~~~--------------~~g~~~~~~~~~~~~a~~~~~~  178 (357)
T 3d8b_A          118 KGILLFGPPGTGKTLIGKCIASQS--GA---TFFSISASSLTSK--------------WVGEGEKMVRALFAVARCQQPA  178 (357)
T ss_dssp             SEEEEESSTTSSHHHHHHHHHHHT--TC---EEEEEEGGGGCCS--------------STTHHHHHHHHHHHHHHHTCSE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHc--CC---eEEEEehHHhhcc--------------ccchHHHHHHHHHHHHHhcCCe
Confidence            358899999999999999999876  22   2344554332110              0000000111111112234678


Q ss_pred             EEEEcCCCCcc-------------hhhhh-----ccC-CCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHH
Q 037045           82 VLFLDGVSSEI-------------NFKEI-----GMH-DDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKK  137 (424)
Q Consensus        82 LlvlD~~~~~~-------------~~~~~-----~~~-~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~  137 (424)
                      +|+||+++...             ....+     +.. ....+..||.||.......     .-...+.+...+.++..+
T Consensus       179 vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~  258 (357)
T 3d8b_A          179 VIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQ  258 (357)
T ss_dssp             EEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHH
T ss_pred             EEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHH
Confidence            99999986431             11122     111 1123345555665432222     334577888899999999


Q ss_pred             HHHHHhcccCCCCccHHHHHHHHHHhcCC-chHHHHHHHH
Q 037045          138 LFWEVVGVHLKKYPDIELVADSIVKECGG-MPYMLKLIGK  176 (424)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~I~~~~~g-~Plai~~~a~  176 (424)
                      ++...+....  ....++....|++.+.| .+..|..++.
T Consensus       259 il~~~~~~~~--~~l~~~~l~~la~~t~G~s~~dl~~l~~  296 (357)
T 3d8b_A          259 IVINLMSKEQ--CCLSEEEIEQIVQQSDAFSGADMTQLCR  296 (357)
T ss_dssp             HHHHHHHTSC--BCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHhhcC--CCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            9988775431  11224567889999988 5556666554

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.27  E-value=2e-05  Score=71.70  Aligned_cols=152  Identities=15%  Similarity=0.133  Sum_probs=84.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHH-HHHHhccCc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADI-ISKELNDRS   80 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-l~~~l~~~~   80 (424)
                      +-+.|+|++|+|||++|+.+++...  ..   .+.++++....              .... ........ +.......+
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~~~--~~---~~~i~~~~l~~--------------~~~~-~~~~~~~~~~~~~~~~~~  114 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATECS--AT---FLNISAASLTS--------------KYVG-DGEKLVRALFAVARHMQP  114 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHTT--CE---EEEEESTTTSS--------------SSCS-CHHHHHHHHHHHHHHTCS
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhC--CC---eEEeeHHHHhh--------------cccc-hHHHHHHHHHHHHHHcCC
Confidence            3588999999999999999999772  21   23444332110              0000 01111111 112223467


Q ss_pred             EEEEEcCCCCcch-----------------hhhh-ccCC--CCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHH
Q 037045           81 YVLFLDGVSSEIN-----------------FKEI-GMHD--DHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREA  135 (424)
Q Consensus        81 ~LlvlD~~~~~~~-----------------~~~~-~~~~--~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~  135 (424)
                      .+|+||+++....                 +..+ ..+.  ...+..||.||.......     .-...+.+...+.++.
T Consensus       115 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r  194 (297)
T 3b9p_A          115 SIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTR  194 (297)
T ss_dssp             EEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHH
T ss_pred             cEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHH
Confidence            8999999976411                 1111 1221  123445666666533222     3346777888888888


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchH-HHHHHH
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPY-MLKLIG  175 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Pl-ai~~~a  175 (424)
                      .+++...+....  ....++....+++.+.|++- +|..++
T Consensus       195 ~~il~~~~~~~~--~~~~~~~~~~la~~~~g~~~~~l~~l~  233 (297)
T 3b9p_A          195 ELLLNRLLQKQG--SPLDTEALRRLAKITDGYSGSDLTALA  233 (297)
T ss_dssp             HHHHHHHHGGGS--CCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHhcC--CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence            888887775432  11224567789999999875 555544

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=98.27  E-value=3.1e-05  Score=74.58  Aligned_cols=155  Identities=15%  Similarity=0.167  Sum_probs=85.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +-|.|+|++|+|||+||+.+++...  .    .-++.++...    +...   ..+.  ..   ......+...-...+.
T Consensus       168 ~~vLL~GppGtGKT~lA~aia~~~~--~----~~~~~v~~~~----l~~~---~~g~--~~---~~~~~~f~~a~~~~~~  229 (444)
T 2zan_A          168 RGILLFGPPGTGKSYLAKAVATEAN--N----STFFSISSSD----LVSK---WLGE--SE---KLVKNLFQLARENKPS  229 (444)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHCC--S----SEEEEECCC------------------CC---CTHHHHHHHHHHSCSE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcC--C----CCEEEEeHHH----HHhh---hcch--HH---HHHHHHHHHHHHcCCe
Confidence            4588999999999999999999761  1    1223332221    1100   0110  11   1111122222235678


Q ss_pred             EEEEcCCCCcc-------------hhhhh-----ccCCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHHH
Q 037045           82 VLFLDGVSSEI-------------NFKEI-----GMHDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKKL  138 (424)
Q Consensus        82 LlvlD~~~~~~-------------~~~~~-----~~~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~l  138 (424)
                      +|+||+++...             ....+     ++.....+..||.||.......     .-...+.+...+.++..++
T Consensus       230 vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~i  309 (444)
T 2zan_A          230 IIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAM  309 (444)
T ss_dssp             EEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHH
T ss_pred             EEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHH
Confidence            99999998651             11222     0111233445665665443222     3445778888888888899


Q ss_pred             HHHHhcccCCCCccHHHHHHHHHHhcCCc-hHHHHHHHH
Q 037045          139 FWEVVGVHLKKYPDIELVADSIVKECGGM-PYMLKLIGK  176 (424)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~I~~~~~g~-Plai~~~a~  176 (424)
                      +...+....  ....+.....|++.+.|+ +..|..++.
T Consensus       310 l~~~l~~~~--~~l~~~~l~~la~~t~G~sgadl~~l~~  346 (444)
T 2zan_A          310 FRLHLGSTQ--NSLTEADFQELGRKTDGYSGADISIIVR  346 (444)
T ss_dssp             HHHHHTTSC--EECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHhcCC--CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            988875431  111245667899999984 556655553

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.23  E-value=4.5e-06  Score=78.02  Aligned_cols=96  Identities=13%  Similarity=0.080  Sum_probs=61.9

Q ss_pred             cCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCC
Q 037045           78 DRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKK  149 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~  149 (424)
                      ++.-++|+|+++....  .+.+  .+.....++.+|++|.......    .....+++.+++.++..+.+.+.+....  
T Consensus       133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~--  210 (354)
T 1sxj_E          133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER--  210 (354)
T ss_dssp             -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT--
T ss_pred             CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcC--
Confidence            3567999999988532  1222  1111233577777776543222    5668899999999999999988775431  


Q ss_pred             CccH-HHHHHHHHHhcCCchHHHHHHH
Q 037045          150 YPDI-ELVADSIVKECGGMPYMLKLIG  175 (424)
Q Consensus       150 ~~~~-~~~~~~I~~~~~g~Plai~~~a  175 (424)
                      .... ++.+..|++.++|.+..+..+.
T Consensus       211 ~~~~~~~~l~~i~~~~~G~~r~a~~~l  237 (354)
T 1sxj_E          211 IQLETKDILKRIAQASNGNLRVSLLML  237 (354)
T ss_dssp             CEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence            1122 3467889999999987655444

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.20  E-value=2.5e-05  Score=71.16  Aligned_cols=145  Identities=14%  Similarity=0.155  Sum_probs=81.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +.|.|+|++|+|||++|+.+++...  ..   .+.++.      .++....   .+.     ........+.........
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~~~--~~---~i~v~~------~~l~~~~---~g~-----~~~~~~~~f~~a~~~~p~  110 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANECQ--AN---FISIKG------PELLTMW---FGE-----SEANVREIFDKARQAAPC  110 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHTT--CE---EEEECH------HHHHHHH---HTT-----CTTHHHHHHHHHHHTCSE
T ss_pred             ceEEEECCCCcCHHHHHHHHHHHhC--CC---EEEEEh------HHHHhhh---cCc-----hHHHHHHHHHHHHhcCCe
Confidence            3588999999999999999999772  21   223321      2222211   111     112222233333345679


Q ss_pred             EEEEcCCCCcch----------------hhhh----ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHH
Q 037045           82 VLFLDGVSSEIN----------------FKEI----GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQRE  134 (424)
Q Consensus        82 LlvlD~~~~~~~----------------~~~~----~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~  134 (424)
                      +++||+++....                ...+    .-.....+..||.||.......       .....+.+...+.++
T Consensus       111 il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~  190 (301)
T 3cf0_A          111 VLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS  190 (301)
T ss_dssp             EEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred             EEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHH
Confidence            999999985311                1222    0011223456666665442221       234678899999999


Q ss_pred             HHHHHHHHhcccCCC-CccHHHHHHHHHHhcCCchH
Q 037045          135 AKKLFWEVVGVHLKK-YPDIELVADSIVKECGGMPY  169 (424)
Q Consensus       135 ~~~l~~~~~~~~~~~-~~~~~~~~~~I~~~~~g~Pl  169 (424)
                      ..+++.......... ...    ...+++.+.|++-
T Consensus       191 r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg  222 (301)
T 3cf0_A          191 RVAILKANLRKSPVAKDVD----LEFLAKMTNGFSG  222 (301)
T ss_dssp             HHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCH
T ss_pred             HHHHHHHHHccCCCCccch----HHHHHHHcCCCCH
Confidence            999998877544211 122    3456777887764

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.19  E-value=1.5e-06  Score=73.33  Aligned_cols=125  Identities=16%  Similarity=0.149  Sum_probs=65.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCC-----CCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESR-----RFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL   76 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l   76 (424)
                      +.+.|+|++|+|||++|+.+++......     ....++++++....             ...............+.+.+
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~  110 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV-------------AGAKYRGEFEERLKGVLNDL  110 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHH-------------TTTCSHHHHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHh-------------ccCCccccHHHHHHHHHHHH
Confidence            3578999999999999999998863211     12235555542210             00000000001111111111


Q ss_pred             --ccCcEEEEEcCCCCcc---------hhhhhccC-CCCCCcEEEEEecchhhh------c---ccCceEEecCCCHHHH
Q 037045           77 --NDRSYVLFLDGVSSEI---------NFKEIGMH-DDHGRGKVVFACRSREFC------W---QADGVIHVQQLCQREA  135 (424)
Q Consensus        77 --~~~~~LlvlD~~~~~~---------~~~~~~~~-~~~~~~~iiittr~~~~~------~---~~~~~~~l~~l~~~~~  135 (424)
                        .+++.+||||+++...         ++..+... ....+..+|.||......      .   .....+.+..++.++.
T Consensus       111 ~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~  190 (195)
T 1jbk_A          111 AKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDT  190 (195)
T ss_dssp             HHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHH
T ss_pred             hhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHH
Confidence              2467899999998752         11111000 122345667666654421      1   3333688888888887


Q ss_pred             HHHH
Q 037045          136 KKLF  139 (424)
Q Consensus       136 ~~l~  139 (424)
                      .+++
T Consensus       191 ~~il  194 (195)
T 1jbk_A          191 IAIL  194 (195)
T ss_dssp             HTTC
T ss_pred             HHHh
Confidence            6553

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=98.18  E-value=4.3e-05  Score=72.32  Aligned_cols=153  Identities=14%  Similarity=0.118  Sum_probs=84.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +-|.|+|++|+|||++|+.+++...  .   ..+.+++..-.+  ...            ..........+...-.....
T Consensus       149 ~~vLL~GppGtGKT~la~aia~~~~--~---~~~~v~~~~l~~--~~~------------g~~~~~~~~~~~~a~~~~~~  209 (389)
T 3vfd_A          149 RGLLLFGPPGNGKTMLAKAVAAESN--A---TFFNISAASLTS--KYV------------GEGEKLVRALFAVARELQPS  209 (389)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHHHTT--C---EEEEECSCCC---------------------CHHHHHHHHHHHHHSSSE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhhc--C---cEEEeeHHHhhc--ccc------------chHHHHHHHHHHHHHhcCCe
Confidence            3588999999999999999998762  2   233444332211  000            00011111112222234568


Q ss_pred             EEEEcCCCCcc-------------hhhhh-----ccCC-CCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHHH
Q 037045           82 VLFLDGVSSEI-------------NFKEI-----GMHD-DHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAKK  137 (424)
Q Consensus        82 LlvlD~~~~~~-------------~~~~~-----~~~~-~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~~  137 (424)
                      +|+||+++...             ....+     +... ......||.||.......     .....+.+...+.++..+
T Consensus       210 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~  289 (389)
T 3vfd_A          210 IIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLL  289 (389)
T ss_dssp             EEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHH
T ss_pred             EEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHH
Confidence            99999997541             01111     1111 122344555555433222     333568889999999999


Q ss_pred             HHHHHhcccCCCCccHHHHHHHHHHhcCCchH-HHHHHH
Q 037045          138 LFWEVVGVHLKKYPDIELVADSIVKECGGMPY-MLKLIG  175 (424)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Pl-ai~~~a  175 (424)
                      ++...+....  ....++....|++.+.|+.- +|..+.
T Consensus       290 il~~~~~~~~--~~l~~~~~~~la~~~~g~~~~~l~~L~  326 (389)
T 3vfd_A          290 LLKNLLCKQG--SPLTQKELAQLARMTDGYSGSDLTALA  326 (389)
T ss_dssp             HHHHHHTTSC--CCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHhcC--CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence            9988876532  12224567789999988654 555554

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.16  E-value=8.5e-06  Score=74.56  Aligned_cols=126  Identities=12%  Similarity=0.062  Sum_probs=70.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCc--eEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFD--IIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRS   80 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~   80 (424)
                      -+.|+|++|+|||++|+.+++.........  ..+.++...-.              ..............+..   .+.
T Consensus        69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~--------------~~~~g~~~~~~~~~~~~---~~~  131 (309)
T 3syl_A           69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV--------------GQYIGHTAPKTKEVLKR---AMG  131 (309)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC--------------CSSTTCHHHHHHHHHHH---HTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh--------------hhcccccHHHHHHHHHh---cCC
Confidence            488999999999999998888774322221  23343322110              00000001111111111   145


Q ss_pred             EEEEEcCCCCc-----------chhhhh--ccCCCCCCcEEEEEecchhh----------hcccCceEEecCCCHHHHHH
Q 037045           81 YVLFLDGVSSE-----------INFKEI--GMHDDHGRGKVVFACRSREF----------CWQADGVIHVQQLCQREAKK  137 (424)
Q Consensus        81 ~LlvlD~~~~~-----------~~~~~~--~~~~~~~~~~iiittr~~~~----------~~~~~~~~~l~~l~~~~~~~  137 (424)
                      .+|+||+++..           .....+  .+.....+..+|.||.....          .......+.+++++.++..+
T Consensus       132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~  211 (309)
T 3syl_A          132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFE  211 (309)
T ss_dssp             SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHH
T ss_pred             CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHH
Confidence            69999999843           122232  11123345677777754321          11333789999999999999


Q ss_pred             HHHHHhcc
Q 037045          138 LFWEVVGV  145 (424)
Q Consensus       138 l~~~~~~~  145 (424)
                      ++...+..
T Consensus       212 il~~~l~~  219 (309)
T 3syl_A          212 IAGHMLDD  219 (309)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.16  E-value=0.00025  Score=65.63  Aligned_cols=144  Identities=16%  Similarity=0.101  Sum_probs=86.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      .|.|+|++|+|||++|+.+++..  ...   .+.+++........+.                    ..+..  ..+..+
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~~--~~~---~~~~~~~~~~~~~~~~--------------------~~~~~--~~~~~v  109 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYEM--SAN---IKTTAAPMIEKSGDLA--------------------AILTN--LSEGDI  109 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHT--TCC---EEEEEGGGCCSHHHHH--------------------HHHHT--CCTTCE
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh--CCC---eEEecchhccchhHHH--------------------HHHHh--ccCCCE
Confidence            58899999999999999998876  232   2333433322211111                    11111  235678


Q ss_pred             EEEcCCCCcch--hhhh-------ccC-------------CCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHH
Q 037045           83 LFLDGVSSEIN--FKEI-------GMH-------------DDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREA  135 (424)
Q Consensus        83 lvlD~~~~~~~--~~~~-------~~~-------------~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~  135 (424)
                      |+||+++....  ...+       .+.             ...++..+|.+|.......     .....+.+.+++.++.
T Consensus       110 l~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~  189 (338)
T 3pfi_A          110 LFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSEL  189 (338)
T ss_dssp             EEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHH
T ss_pred             EEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHH
Confidence            99999887521  1111       000             0111345666665433222     3336899999999999


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIG  175 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a  175 (424)
                      .+++.+.+...  .....++....+++.+.|.|..+..+.
T Consensus       190 ~~il~~~~~~~--~~~~~~~~~~~l~~~~~G~~r~l~~~l  227 (338)
T 3pfi_A          190 ALILQKAALKL--NKTCEEKAALEIAKRSRSTPRIALRLL  227 (338)
T ss_dssp             HHHHHHHHHHT--TCEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred             HHHHHHHHHhc--CCCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence            99998877543  122335677889999999996655444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.14  E-value=2.4e-06  Score=79.86  Aligned_cols=127  Identities=16%  Similarity=0.129  Sum_probs=75.7

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHh--cccCCCcEEEccCC--C------CCcCChhh--hc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFF--DYMCHLQLLDLHET--N------IGCLPPSI--SR  330 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~~~~L~~L~l~~~--~------~~~~p~~~--~~  330 (424)
                      ++|+.|++.++....++.+ .+++|+.|.+..+.++......+  ..+++|+.|+++.+  .      +..+.+.+  ..
T Consensus       172 P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~  250 (362)
T 2ra8_A          172 PLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR  250 (362)
T ss_dssp             TTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTT
T ss_pred             CCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCC
Confidence            6788888877632233433 37788888888777653222222  25778888877531  1      11111222  24


Q ss_pred             ccccceeeeccccccccc-CChhh---hccCCCCEEEecCCcCcc-----cchhhhcCCCCCEeeeccccC
Q 037045          331 LINLNALFLRSSCSLLLQ-LPAEI---GRLQKLEILDVSHTKVQC-----LPSEIGQLIELKYLRVSRVEN  392 (424)
Q Consensus       331 l~~L~~l~l~~~~~~~~~-lp~~~---~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~l~l~~n~~  392 (424)
                      +++|++|++  .++.+.. .+..+   +.+++|+.|+++.|.+..     ++.++.++++|+.|+++.|.+
T Consensus       251 ~p~Lr~L~L--~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          251 FPNLKWLGI--VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             CTTCCEEEE--ESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             CCCcCEEeC--CCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            678888888  5555432 22222   246778888888877663     344456677888888887754

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.13  E-value=2.7e-05  Score=73.95  Aligned_cols=139  Identities=19%  Similarity=0.263  Sum_probs=80.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHH----Hhcc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISK----ELND   78 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~----~l~~   78 (424)
                      =|.++|++|+|||.||+.++....  ..|   +.++.+.-.+                  .-.++....++.    .-..
T Consensus       217 GvLL~GPPGtGKTllAkAiA~e~~--~~~---~~v~~s~l~s------------------k~~Gese~~ir~~F~~A~~~  273 (437)
T 4b4t_L          217 GVLLYGPPGTGKTLLAKAVAATIG--ANF---IFSPASGIVD------------------KYIGESARIIREMFAYAKEH  273 (437)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHT--CEE---EEEEGGGTCC------------------SSSSHHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEehhhhcc------------------ccchHHHHHHHHHHHHHHhc
Confidence            478999999999999999999883  322   3344332211                  001111111221    2234


Q ss_pred             CcEEEEEcCCCCcc----------------hhhhh----ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCC
Q 037045           79 RSYVLFLDGVSSEI----------------NFKEI----GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLC  131 (424)
Q Consensus        79 ~~~LlvlD~~~~~~----------------~~~~~----~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~  131 (424)
                      .+++|+||+++...                .+..+    .-.....+..||.||.......       ..+..+++..-+
T Consensus       274 ~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd  353 (437)
T 4b4t_L          274 EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPN  353 (437)
T ss_dssp             CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCC
T ss_pred             CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcC
Confidence            68999999998531                01111    1112233446666665544332       246678888888


Q ss_pred             HHHHHHHHHHHhcccCC-CCccHHHHHHHHHHhcCCch
Q 037045          132 QREAKKLFWEVVGVHLK-KYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       132 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~I~~~~~g~P  168 (424)
                      .++..++|+.+...... ...+    ...|++.+.|+-
T Consensus       354 ~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s  387 (437)
T 4b4t_L          354 EAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN  387 (437)
T ss_dssp             HHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred             HHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence            88888898877754321 1222    456888888754

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.13  E-value=2e-05  Score=74.83  Aligned_cols=140  Identities=15%  Similarity=0.140  Sum_probs=80.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-----CHHHHHHHHHHHhcccccccChhHHHHHHHHHh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-----NIRDIQEIILERLKVNAKELNNDLRADIISKEL   76 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l   76 (424)
                      +=|.++|++|+|||.||+.++....  ..|   +.++.+.-.     ..+..++.+                   +...-
T Consensus       244 rGILLyGPPGTGKTlLAkAiA~e~~--~~f---i~vs~s~L~sk~vGesek~ir~l-------------------F~~Ar  299 (467)
T 4b4t_H          244 KGILLYGPPGTGKTLCARAVANRTD--ATF---IRVIGSELVQKYVGEGARMVREL-------------------FEMAR  299 (467)
T ss_dssp             SEEEECSCTTSSHHHHHHHHHHHHT--CEE---EEEEGGGGCCCSSSHHHHHHHHH-------------------HHHHH
T ss_pred             CceEeeCCCCCcHHHHHHHHHhccC--CCe---EEEEhHHhhcccCCHHHHHHHHH-------------------HHHHH
Confidence            3478999999999999999999883  322   333332211     111111111                   11222


Q ss_pred             ccCcEEEEEcCCCCcc----------------h----hhhhccCCCCCCcEEEEEecchhhhc-------ccCceEEecC
Q 037045           77 NDRSYVLFLDGVSSEI----------------N----FKEIGMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQ  129 (424)
Q Consensus        77 ~~~~~LlvlD~~~~~~----------------~----~~~~~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~  129 (424)
                      ...+++|+||+++...                .    +..+.-.....+..||.||.......       ..+..+++..
T Consensus       300 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~l  379 (467)
T 4b4t_H          300 TKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL  379 (467)
T ss_dssp             HTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCC
T ss_pred             hcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCC
Confidence            3468999999987531                0    11111112223344555665433222       4677888888


Q ss_pred             CCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          130 LCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       130 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      -+.++..++|+.+..........   ....|++.+.|+-
T Consensus       380 Pd~~~R~~Ilk~~l~~~~l~~dv---dl~~LA~~T~GfS  415 (467)
T 4b4t_H          380 PDLEGRANIFRIHSKSMSVERGI---RWELISRLCPNST  415 (467)
T ss_dssp             CCHHHHHHHHHHHHTTSCBCSSC---CHHHHHHHCCSCC
T ss_pred             cCHHHHHHHHHHHhcCCCCCCCC---CHHHHHHHCCCCC
Confidence            89899999998877554211111   2456888888863

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.08  E-value=0.00011  Score=65.22  Aligned_cols=150  Identities=13%  Similarity=0.073  Sum_probs=79.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -+.|+|++|+||||+|+.++....  ..   .+.++...-.+              .............+.........+
T Consensus        47 ~vll~G~~GtGKT~la~~la~~~~--~~---~~~i~~~~~~~--------------~~~~~~~~~~~~~~~~a~~~~~~i  107 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGEAK--VP---FFTISGSDFVE--------------MFVGVGASRVRDMFEQAKKAAPCI  107 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT--CC---EEEECSCSSTT--------------SCCCCCHHHHHHHHHHHHTTCSEE
T ss_pred             eEEEECcCCCCHHHHHHHHHHHcC--CC---EEEEeHHHHHH--------------HhhhhhHHHHHHHHHHHHHcCCee
Confidence            478999999999999999999872  22   23443322111              000111111122222223345789


Q ss_pred             EEEcCCCCcc----------------hhhhh----ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHH
Q 037045           83 LFLDGVSSEI----------------NFKEI----GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREA  135 (424)
Q Consensus        83 lvlD~~~~~~----------------~~~~~----~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~  135 (424)
                      +++|+++...                .+..+    .-.....+..||.||.......       .....+.+...+.++-
T Consensus       108 l~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r  187 (257)
T 1lv7_A          108 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR  187 (257)
T ss_dssp             EEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred             ehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHH
Confidence            9999985321                01111    0001223445666665443221       2245677888888888


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCC-chHHHHHH
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGG-MPYMLKLI  174 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g-~Plai~~~  174 (424)
                      .+++............   .....+++.+.| .+..|..+
T Consensus       188 ~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~~l  224 (257)
T 1lv7_A          188 EQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLANL  224 (257)
T ss_dssp             HHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred             HHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHHHH
Confidence            8888777654311111   123457778888 66555544

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.08  E-value=3.4e-05  Score=71.06  Aligned_cols=149  Identities=15%  Similarity=0.089  Sum_probs=83.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +++.++|++|+|||++|+.+++...     ..++.++.+.. .... .+..+.......              ...++..
T Consensus        49 ~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~-~~~~-i~~~~~~~~~~~--------------~~~~~~~  107 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDC-KIDF-VRGPLTNFASAA--------------SFDGRQK  107 (324)
T ss_dssp             SEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTC-CHHH-HHTHHHHHHHBC--------------CCSSCEE
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEccccc-CHHH-HHHHHHHHHhhc--------------ccCCCCe
Confidence            3567788899999999999998772     12445554332 2222 222211111000              0123678


Q ss_pred             EEEEcCCCCcc---hhhhh-c-cCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHH-------HHHHhcc
Q 037045           82 VLFLDGVSSEI---NFKEI-G-MHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKL-------FWEVVGV  145 (424)
Q Consensus        82 LlvlD~~~~~~---~~~~~-~-~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l-------~~~~~~~  145 (424)
                      ++++|+++...   ..+.+ . +.....++.+|+||.......    .....+++++.+.++..++       +.+.+..
T Consensus       108 vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~  187 (324)
T 3u61_B          108 VIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKH  187 (324)
T ss_dssp             EEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999864   22222 1 111224567777776644322    4556899999998874333       2222222


Q ss_pred             cCCCCccHH-HHHHHHHHhcCCchHHHHH
Q 037045          146 HLKKYPDIE-LVADSIVKECGGMPYMLKL  173 (424)
Q Consensus       146 ~~~~~~~~~-~~~~~I~~~~~g~Plai~~  173 (424)
                      ..  ....+ +....|++.++|.+..+..
T Consensus       188 ~~--~~~~~~~~~~~l~~~~~gd~R~a~~  214 (324)
T 3u61_B          188 EG--IAIADMKVVAALVKKNFPDFRKTIG  214 (324)
T ss_dssp             HT--CCBSCHHHHHHHHHHTCSCTTHHHH
T ss_pred             cC--CCCCcHHHHHHHHHhCCCCHHHHHH
Confidence            21  11112 6678899999988765443

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.05  E-value=2.3e-05  Score=73.68  Aligned_cols=138  Identities=16%  Similarity=0.162  Sum_probs=78.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-----CHHHHHHHHHHHhcccccccChhHHHHHHHHHhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-----NIRDIQEIILERLKVNAKELNNDLRADIISKELN   77 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~   77 (424)
                      =|.++|++|+|||.||+.++...  ...|   +.++.+.-.     ..+...+.++.                   ..-.
T Consensus       218 GvLLyGPPGTGKTlLAkAiA~e~--~~~f---i~v~~s~l~sk~vGesek~ir~lF~-------------------~Ar~  273 (437)
T 4b4t_I          218 GVILYGAPGTGKTLLAKAVANQT--SATF---LRIVGSELIQKYLGDGPRLCRQIFK-------------------VAGE  273 (437)
T ss_dssp             EEEEESSTTTTHHHHHHHHHHHH--TCEE---EEEESGGGCCSSSSHHHHHHHHHHH-------------------HHHH
T ss_pred             CCceECCCCchHHHHHHHHHHHh--CCCE---EEEEHHHhhhccCchHHHHHHHHHH-------------------HHHh
Confidence            47899999999999999999988  3332   333322210     11122222211                   1113


Q ss_pred             cCcEEEEEcCCCCcc----------------h----hhhhccCCCCCCcEEEEEecchhhhc-------ccCceEEecCC
Q 037045           78 DRSYVLFLDGVSSEI----------------N----FKEIGMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQL  130 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~----------------~----~~~~~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l  130 (424)
                      ..+++|+||+++...                .    +..+.......+..||.||.......       ..+..+++..-
T Consensus       274 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lP  353 (437)
T 4b4t_I          274 NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENP  353 (437)
T ss_dssp             TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCC
T ss_pred             cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCc
Confidence            468999999987531                0    11111112233445555665444333       34456778888


Q ss_pred             CHHHHHHHHHHHhcccCC-CCccHHHHHHHHHHhcCCch
Q 037045          131 CQREAKKLFWEVVGVHLK-KYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       131 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~I~~~~~g~P  168 (424)
                      +.++..++|+.+...... ...+    ...|++.+.|+-
T Consensus       354 d~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS  388 (437)
T 4b4t_I          354 DLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS  388 (437)
T ss_dssp             CHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred             CHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence            888888999877754421 1122    456778887763

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.05  E-value=6.3e-06  Score=69.00  Aligned_cols=99  Identities=17%  Similarity=0.173  Sum_probs=54.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +.+.|+|++|+|||||++.++.......... +++++      ..++...+.........    .....    .+ .+.-
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~----~~~~~----~~-~~~~  102 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD----TKFLK----TV-LNSP  102 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC----SHHHH----HH-HTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH----HHHHH----Hh-cCCC
Confidence            4689999999999999999998874222222 33433      34444444443332211    11111    12 2456


Q ss_pred             EEEEcCCCC--cchhhh--h-c-cC-CCCCCcEEEEEecchh
Q 037045           82 VLFLDGVSS--EINFKE--I-G-MH-DDHGRGKVVFACRSRE  116 (424)
Q Consensus        82 LlvlD~~~~--~~~~~~--~-~-~~-~~~~~~~iiittr~~~  116 (424)
                      +||||+++.  ...+..  + . +. ....+..+|+||....
T Consensus       103 llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~  144 (180)
T 3ec2_A          103 VLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL  144 (180)
T ss_dssp             EEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred             EEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence            899999973  222221  1 1 11 1234677888886543

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.05  E-value=5.5e-05  Score=70.18  Aligned_cols=151  Identities=12%  Similarity=0.131  Sum_probs=86.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCc-eEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFD-IIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      +.++|+.|+||||+|+.++.... ...+. .+..++.+.......+.. ....+....             ..+.+..-+
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~ir~-~i~~~~~~~-------------~~~~~~~~v  113 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVVRN-QIKDFASTR-------------QIFSKGFKL  113 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHHHT-HHHHHHHBC-------------CSSSCSCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHHHH-HHHHHHhhc-------------ccCCCCceE
Confidence            78999999999999999999863 12221 133333333222222221 111111000             001234678


Q ss_pred             EEEcCCCCcc--hhhhh--ccCCCCCCcEEEEEecchhhh-c---ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHH
Q 037045           83 LFLDGVSSEI--NFKEI--GMHDDHGRGKVVFACRSREFC-W---QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIE  154 (424)
Q Consensus        83 lvlD~~~~~~--~~~~~--~~~~~~~~~~iiittr~~~~~-~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~  154 (424)
                      +|+|+++...  ..+.+  .+......+.+|++|...... +   .....+.+.+++.++..+.+.+.+....  ....+
T Consensus       114 iiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~--~~i~~  191 (340)
T 1sxj_C          114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEK--LKLSP  191 (340)
T ss_dssp             EEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTT--CCBCH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcC--CCCCH
Confidence            9999998653  12222  011122455666666543322 1   4556889999999999998887774321  12224


Q ss_pred             HHHHHHHHhcCCchHHH
Q 037045          155 LVADSIVKECGGMPYML  171 (424)
Q Consensus       155 ~~~~~I~~~~~g~Plai  171 (424)
                      +..+.+++.++|.+..+
T Consensus       192 ~~~~~i~~~s~G~~r~~  208 (340)
T 1sxj_C          192 NAEKALIELSNGDMRRV  208 (340)
T ss_dssp             HHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCCHHHH
Confidence            56788999999988643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.03  E-value=2.2e-06  Score=80.09  Aligned_cols=150  Identities=17%  Similarity=0.137  Sum_probs=96.1

Q ss_pred             cceeEEEeeccCCCC----------CCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCc-CChhhh-
Q 037045          263 AHTKRLSLFGFPSST----------LPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGC-LPPSIS-  329 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~----------~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~p~~~~-  329 (424)
                      ++|+.|.+.......          +.. +..+++|+.|.+++|.-..+++  + .+++|+.|++..+.+.. ....++ 
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~  215 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILG  215 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHHHH
Confidence            799999997654321          211 2667899999999873223333  2 37899999999887632 223343 


Q ss_pred             -cccccceeeecccc-cc------cccCChhh--hccCCCCEEEecCCcCcc-cchhh---hcCCCCCEeeeccccCCCC
Q 037045          330 -RLINLNALFLRSSC-SL------LLQLPAEI--GRLQKLEILDVSHTKVQC-LPSEI---GQLIELKYLRVSRVENVGN  395 (424)
Q Consensus       330 -~l~~L~~l~l~~~~-~~------~~~lp~~~--~~l~~L~~L~l~~~~i~~-lp~~i---~~l~~L~~l~l~~n~~~~~  395 (424)
                       .+++|+.|++. .+ +.      +..+...+  +.+++|++|++.+|.+.. .+..+   ..+++|++|+++.|.+...
T Consensus       216 ~~lp~L~~L~L~-~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~  294 (362)
T 2ra8_A          216 SDLPNLEKLVLY-VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE  294 (362)
T ss_dssp             SBCTTCCEEEEE-CBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred             ccCCCCcEEEEe-ccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence             68999999983 21 11      11222222  357999999999998762 33333   3678999999999865321


Q ss_pred             cccCCCCCCCCcChhhhhccccCceeecC
Q 037045          396 HTHADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       396 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                              +.......+.++++|+.|+|+
T Consensus       295 --------G~~~L~~~L~~l~~L~~L~L~  315 (362)
T 2ra8_A          295 --------GARLLLDHVDKIKHLKFINMK  315 (362)
T ss_dssp             --------HHHHHHTTHHHHTTCSEEECC
T ss_pred             --------HHHHHHhhcccCCcceEEECC
Confidence                    001123345678899999874

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.01  E-value=2e-05  Score=74.82  Aligned_cols=137  Identities=11%  Similarity=0.094  Sum_probs=77.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-----CHHHHHHHHHHHhcccccccChhHHHHHHHHHhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-----NIRDIQEIILERLKVNAKELNNDLRADIISKELN   77 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~   77 (424)
                      =|.+|||+|+|||.||+.++....  ..|   +.++.+.-.     ..+...+.++.                   ..-.
T Consensus       217 GvLLyGPPGTGKTllAkAiA~e~~--~~f---~~v~~s~l~~~~vGese~~ir~lF~-------------------~A~~  272 (434)
T 4b4t_M          217 GALMYGPPGTGKTLLARACAAQTN--ATF---LKLAAPQLVQMYIGEGAKLVRDAFA-------------------LAKE  272 (434)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHT--CEE---EEEEGGGGCSSCSSHHHHHHHHHHH-------------------HHHH
T ss_pred             eeEEECcCCCCHHHHHHHHHHHhC--CCE---EEEehhhhhhcccchHHHHHHHHHH-------------------HHHh
Confidence            478999999999999999999883  322   333332211     11112222211                   1112


Q ss_pred             cCcEEEEEcCCCCcc------------h--------hhhhccCCCCCCcEEEEEecchhhhc-------ccCceEEecCC
Q 037045           78 DRSYVLFLDGVSSEI------------N--------FKEIGMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQL  130 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~------------~--------~~~~~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l  130 (424)
                      ..+++|+||+++...            .        +..+.-.....+-.||.||.......       ..+..++++.-
T Consensus       273 ~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lP  352 (434)
T 4b4t_M          273 KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLP  352 (434)
T ss_dssp             HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCC
T ss_pred             cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCc
Confidence            468999999986420            0        11110001223334555665443322       45567888888


Q ss_pred             CHHHHHHHHHHHhcccCC-CCccHHHHHHHHHHhcCCc
Q 037045          131 CQREAKKLFWEVVGVHLK-KYPDIELVADSIVKECGGM  167 (424)
Q Consensus       131 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~I~~~~~g~  167 (424)
                      +.++..++|+.+...... ...+    ...|++.+.|+
T Consensus       353 d~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~  386 (434)
T 4b4t_M          353 SEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF  386 (434)
T ss_dssp             CHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred             CHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence            888888888877654321 1122    45678888875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.99  E-value=5.2e-06  Score=69.89  Aligned_cols=108  Identities=9%  Similarity=0.029  Sum_probs=63.8

Q ss_pred             CcccccEEEccCC-CCCCC----ChHHhcccCCCcEEEccCCCCCc-----CChhhhcccccceeeeccccccccc----
Q 037045          283 NCCEILTLILEGK-RLEKL----PTSFFDYMCHLQLLDLHETNIGC-----LPPSISRLINLNALFLRSSCSLLLQ----  348 (424)
Q Consensus       283 ~~~~L~~L~l~~~-~l~~~----~~~~~~~~~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~l~l~~~~~~~~~----  348 (424)
                      .+++|+.|++++| .+...    ....+...++|++|++++|.++.     +...+...++|++|++  +++.++.    
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L--~~N~i~~~g~~  111 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV--ESNFISGSGIL  111 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC--CSSCCCHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEEC--cCCcCCHHHHH
Confidence            3455566666655 55421    11223344566666666666522     2233344456667776  5555543    


Q ss_pred             -CChhhhccCCCCEEEe--cCCcCcc-----cchhhhcCCCCCEeeeccccC
Q 037045          349 -LPAEIGRLQKLEILDV--SHTKVQC-----LPSEIGQLIELKYLRVSRVEN  392 (424)
Q Consensus       349 -lp~~~~~l~~L~~L~l--~~~~i~~-----lp~~i~~l~~L~~l~l~~n~~  392 (424)
                       +...+...+.|+.|++  ++|.+..     +...+...++|++|+++.|.+
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence             3455666678888888  7787763     444456668899999888853

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.96  E-value=9.6e-06  Score=69.24  Aligned_cols=97  Identities=18%  Similarity=0.295  Sum_probs=53.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +.+.|+|++|+|||+||+.+++...  .....++|+.+.      .+...+...+.    .........    .+... -
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~----~~~~~~~~~----~~~~~-~  117 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYVP------ELFRELKHSLQ----DQTMNEKLD----YIKKV-P  117 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEHH------HHHHHHHHC-------CCCHHHHH----HHHHS-S
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEhH------HHHHHHHHHhc----cchHHHHHH----HhcCC-C
Confidence            4688999999999999999999884  333446666543      33333332221    111222222    22222 3


Q ss_pred             EEEEcCCCCc--chhhh--h-c-cC--CCCCCcEEEEEecch
Q 037045           82 VLFLDGVSSE--INFKE--I-G-MH--DDHGRGKVVFACRSR  115 (424)
Q Consensus        82 LlvlD~~~~~--~~~~~--~-~-~~--~~~~~~~iiittr~~  115 (424)
                      +||||+++..  ..+..  + . +.  ....+..+|+||...
T Consensus       118 ~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~  159 (202)
T 2w58_A          118 VLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD  159 (202)
T ss_dssp             EEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence            8999999553  22211  1 0 11  112455788887643

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.92  E-value=3.7e-05  Score=73.03  Aligned_cols=55  Identities=18%  Similarity=0.198  Sum_probs=31.7

Q ss_pred             cceeEEEeeccCCCCCCCC-cCcccccEEEccCCCCCCCChHHhcccCCCcEEEccC
Q 037045          263 AHTKRLSLFGFPSSTLPDM-PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHE  318 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~  318 (424)
                      .+|+.+++.+|.+..++.. ..+.+|+.+.+.. .++.++...|..+++|+.+++..
T Consensus       180 ~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          180 YNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             TTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT
T ss_pred             ccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC
Confidence            5666677766666654422 3355666666653 35555555566666666666654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.91  E-value=2.7e-05  Score=73.79  Aligned_cols=137  Identities=20%  Similarity=0.274  Sum_probs=73.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC-----HHHHHHHHHHHhcccccccChhHHHHHHHHHhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN-----IRDIQEIILERLKVNAKELNNDLRADIISKELN   77 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-----~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~   77 (424)
                      =|.++|++|+|||++|+.+++..  ...|   +.++.+.-.+     .+..++++                   +...-.
T Consensus       208 GiLL~GPPGtGKT~lakAiA~~~--~~~~---~~v~~~~l~~~~~Ge~e~~ir~l-------------------F~~A~~  263 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVANST--KAAF---IRVNGSEFVHKYLGEGPRMVRDV-------------------FRLARE  263 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHHHH--TCEE---EEEEGGGTCCSSCSHHHHHHHHH-------------------HHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh--CCCe---EEEecchhhccccchhHHHHHHH-------------------HHHHHH
Confidence            37899999999999999999988  3322   3444333111     11112111                   111113


Q ss_pred             cCcEEEEEcCCCCcc----------------hhhhh-----ccCCCCCCcEEEEEecchhhhc-------ccCceEEecC
Q 037045           78 DRSYVLFLDGVSSEI----------------NFKEI-----GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQ  129 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~----------------~~~~~-----~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~  129 (424)
                      ..++++++|+++...                .+..+     ++ ....+..||.||.......       ..+..+++..
T Consensus       264 ~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~-~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~  342 (428)
T 4b4t_K          264 NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF-DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPS  342 (428)
T ss_dssp             TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS-CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCS
T ss_pred             cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC-CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCC
Confidence            468999999986320                01122     11 2233445666665443322       3345677766


Q ss_pred             CC-HHHHHHHHHHHhcccCC-CCccHHHHHHHHHHhcCCch
Q 037045          130 LC-QREAKKLFWEVVGVHLK-KYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       130 l~-~~~~~~l~~~~~~~~~~-~~~~~~~~~~~I~~~~~g~P  168 (424)
                      +. .++-.++|+........ ...+    ...|++.+.|+-
T Consensus       343 lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s  379 (428)
T 4b4t_K          343 LRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS  379 (428)
T ss_dssp             SCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred             CCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence            64 45555666665543311 1122    456778887753

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.80  E-value=0.00033  Score=63.43  Aligned_cols=24  Identities=29%  Similarity=0.481  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +.+.++|++|+|||+||+.+++..
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999988

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.77  E-value=1.3e-05  Score=71.28  Aligned_cols=78  Identities=21%  Similarity=0.196  Sum_probs=43.4

Q ss_pred             cccCCCcEEEccCCCCCc---CChhhhcccccceeeecccccccccCChhhhccC--CCCEEEecCCcCc-ccch-----
Q 037045          306 DYMCHLQLLDLHETNIGC---LPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQ--KLEILDVSHTKVQ-CLPS-----  374 (424)
Q Consensus       306 ~~~~~L~~L~l~~~~~~~---~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~--~L~~L~l~~~~i~-~lp~-----  374 (424)
                      ..+++|+.|++++|.+..   +|..+..+++|+.|++  ++|.+..+. .+..+.  +|+.|++++|++. .+|.     
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~L--s~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL--SGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEEC--TTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEEC--CCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            346667777777776633   2344455666666666  555555442 233333  6666666666655 3431     


Q ss_pred             --hhhcCCCCCEee
Q 037045          375 --EIGQLIELKYLR  386 (424)
Q Consensus       375 --~i~~l~~L~~l~  386 (424)
                        .+..+++|+.|+
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence              245666666665

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.77  E-value=0.0004  Score=66.96  Aligned_cols=144  Identities=17%  Similarity=0.131  Sum_probs=80.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -|.|+|++|+|||+||+.++....  ..|   +.++.+...+.  +            ...........+.......+++
T Consensus        51 gvLL~GppGtGKT~Laraia~~~~--~~f---~~is~~~~~~~--~------------~g~~~~~~r~lf~~A~~~~p~I  111 (476)
T 2ce7_A           51 GILLVGPPGTGKTLLARAVAGEAN--VPF---FHISGSDFVEL--F------------VGVGAARVRDLFAQAKAHAPCI  111 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT--CCE---EEEEGGGTTTC--C------------TTHHHHHHHHHHHHHHHTCSEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC--CCe---eeCCHHHHHHH--H------------hcccHHHHHHHHHHHHhcCCCE
Confidence            378999999999999999999872  222   34443332110  0            0000111122233333457899


Q ss_pred             EEEcCCCCcc----------------hhhhhc--cC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHH
Q 037045           83 LFLDGVSSEI----------------NFKEIG--MH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREA  135 (424)
Q Consensus        83 lvlD~~~~~~----------------~~~~~~--~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~  135 (424)
                      |+||+++...                .+..+.  +.  ....+..||.||.......       .....+.++..+.++-
T Consensus       112 LfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R  191 (476)
T 2ce7_A          112 VFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR  191 (476)
T ss_dssp             EEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred             EEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHH
Confidence            9999996531                112220  00  1123445666665543322       2344788888888888


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      .++++............   ....+++.+.|+.
T Consensus       192 ~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s  221 (476)
T 2ce7_A          192 KKILEIHTRNKPLAEDV---NLEIIAKRTPGFV  221 (476)
T ss_dssp             HHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred             HHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence            88888776543211111   1455888888877

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.76  E-value=0.00035  Score=67.86  Aligned_cols=151  Identities=13%  Similarity=0.109  Sum_probs=82.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -|.|+|++|+|||++|+.+++..  ...   .+.++++.-          ...+    ...........+....++++.+
T Consensus       240 ~vLL~GppGtGKT~lAraia~~~--~~~---fv~vn~~~l----------~~~~----~g~~~~~~~~~f~~A~~~~p~i  300 (489)
T 3hu3_A          240 GILLYGPPGTGKTLIARAVANET--GAF---FFLINGPEI----------MSKL----AGESESNLRKAFEEAEKNAPAI  300 (489)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC--SSE---EEEEEHHHH----------HTSC----TTHHHHHHHHHHHHHHHTCSEE
T ss_pred             cEEEECcCCCCHHHHHHHHHHHh--CCC---EEEEEchHh----------hhhh----cchhHHHHHHHHHHHHhcCCcE
Confidence            47899999999999999999876  222   344443211          0000    0001111122233333456789


Q ss_pred             EEEcCCCCcc-------------hhhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHHHH
Q 037045           83 LFLDGVSSEI-------------NFKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAKKL  138 (424)
Q Consensus        83 lvlD~~~~~~-------------~~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~~l  138 (424)
                      |+||+++...             ....+  .+.  ....+..||.||.......       .....+.+...+.++..++
T Consensus       301 LfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~I  380 (489)
T 3hu3_A          301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI  380 (489)
T ss_dssp             EEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHH
T ss_pred             EEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHH
Confidence            9999985321             11112  011  2223445555665442211       3344688999999999999


Q ss_pred             HHHHhcccCCCCccHHHHHHHHHHhcCCc-hHHHHHHH
Q 037045          139 FWEVVGVHLKKYPDIELVADSIVKECGGM-PYMLKLIG  175 (424)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~I~~~~~g~-Plai~~~a  175 (424)
                      +...........   +....++++.+.|+ +..|..+.
T Consensus       381 L~~~~~~~~l~~---~~~l~~la~~t~g~s~~dL~~L~  415 (489)
T 3hu3_A          381 LQIHTKNMKLAD---DVDLEQVANETHGHVGADLAALC  415 (489)
T ss_dssp             HHHHTTTSCBCT---TCCHHHHHHTCTTCCHHHHHHHH
T ss_pred             HHHHHhcCCCcc---hhhHHHHHHHccCCcHHHHHHHH
Confidence            998875432111   11235577777775 54454443

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.74  E-value=1.8e-05  Score=70.78  Aligned_cols=143  Identities=12%  Similarity=0.053  Sum_probs=74.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL   83 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll   83 (424)
                      +.|+|++|+|||++|+.+++...  ..|-   .++.+...+          ... ..........   +.........+|
T Consensus        47 vll~G~~GtGKT~la~~la~~~~--~~~~---~v~~~~~~~----------~~~-~~~~~~~~~~---~~~a~~~~~~vl  107 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEAH--VPFF---SMGGSSFIE----------MFV-GLGASRVRDL---FETAKKQAPSII  107 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHHT--CCCC---CCCSCTTTT----------SCS-SSCSSSSSTT---HHHHHHSCSCEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHhC--CCEE---EechHHHHH----------hhc-chHHHHHHHH---HHHHHhcCCeEE
Confidence            67899999999999999999873  3221   112111100          000 0011111111   222223456899


Q ss_pred             EEcCCCCcch-----------------hhhhc--cC---CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHH
Q 037045           84 FLDGVSSEIN-----------------FKEIG--MH---DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQRE  134 (424)
Q Consensus        84 vlD~~~~~~~-----------------~~~~~--~~---~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~  134 (424)
                      +||+++....                 +..+.  +.   .......+|.||.......       .....+.+...+.++
T Consensus       108 ~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~  187 (268)
T 2r62_A          108 FIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNG  187 (268)
T ss_dssp             EESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTT
T ss_pred             EEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHH
Confidence            9999975421                 22220  00   1112245666665443221       234568888899999


Q ss_pred             HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      ..+++...+.........   ....+++.+.|.+
T Consensus       188 r~~il~~~~~~~~~~~~~---~~~~la~~~~g~~  218 (268)
T 2r62_A          188 RVEILKVHIKGVKLANDV---NLQEVAKLTAGLA  218 (268)
T ss_dssp             HHHHHHHHTSSSCCCSSC---CTTTTTSSSCSSC
T ss_pred             HHHHHHHHHhcCCCCCcc---CHHHHHHHcCCCC
Confidence            999998776543111111   1234666677765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.74  E-value=0.00012  Score=69.37  Aligned_cols=121  Identities=12%  Similarity=0.134  Sum_probs=84.5

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l  339 (424)
                      .+|+.+.+.. .+..++  .+..|.+|+.+++++|.++.++...|. ...|+.+.+..+ +..++ ..|..+++|+.+.+
T Consensus       157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred             CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence            4578888876 555543  358899999999999999998888776 588999999854 65554 45788889999988


Q ss_pred             cccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeecccc
Q 037045          340 RSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVE  391 (424)
Q Consensus       340 ~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~  391 (424)
                        ..+ +..++. .+.. .+|+.+.+. +.++.++.. |..+++|+.+.+.+|.
T Consensus       234 --~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~  282 (401)
T 4fdw_A          234 --PEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGST  282 (401)
T ss_dssp             --CTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred             --CCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcc
Confidence              443 444443 3333 567777773 345555444 6677777777776654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.73  E-value=0.00022  Score=65.14  Aligned_cols=82  Identities=12%  Similarity=0.208  Sum_probs=46.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc-cCcE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN-DRSY   81 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~   81 (424)
                      .+.|+|++|+|||++|+.+++...  ..-...+.++++........    ...++........... ..+...+. ....
T Consensus        49 ~~ll~G~~GtGKt~la~~la~~~~--~~~~~~~~~~~~~~~~~~~~----~~l~g~~~~~~~~~~~-~~~~~~~~~~~~~  121 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKHAV----SRLIGAPPGYVGYEEG-GQLTEAVRRRPYS  121 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHHH--SCGGGEEEEEGGGCCSTTHH----HHHHCCCTTSTTTTTC-CHHHHHHHHCSSE
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHc--CCCcceEEeecccccccccH----HHhcCCCCcccccccc-chHHHHHHhCCCe
Confidence            689999999999999999999873  22233566776654332211    1112222111111100 11222222 3457


Q ss_pred             EEEEcCCCCc
Q 037045           82 VLFLDGVSSE   91 (424)
Q Consensus        82 LlvlD~~~~~   91 (424)
                      +++||+++..
T Consensus       122 vl~lDEi~~l  131 (311)
T 4fcw_A          122 VILFDAIEKA  131 (311)
T ss_dssp             EEEEETGGGS
T ss_pred             EEEEeChhhc
Confidence            9999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.73  E-value=2.3e-05  Score=69.58  Aligned_cols=86  Identities=19%  Similarity=0.193  Sum_probs=65.6

Q ss_pred             hcccccceeeecccccccccCC---hhhhccCCCCEEEecCCcCcccchhhhcCC--CCCEeeeccccCCCCcccCCCCC
Q 037045          329 SRLINLNALFLRSSCSLLLQLP---AEIGRLQKLEILDVSHTKVQCLPSEIGQLI--ELKYLRVSRVENVGNHTHADAGS  403 (424)
Q Consensus       329 ~~l~~L~~l~l~~~~~~~~~lp---~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~--~L~~l~l~~n~~~~~~~~~~~~~  403 (424)
                      ..+++|++|++  ++|.+..++   ..+..+++|+.|++++|.++.+. .+..++  +|+.|++++|++.+.+|.     
T Consensus       167 ~~l~~L~~L~L--s~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~-----  238 (267)
T 3rw6_A          167 ENIPELLSLNL--SNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRD-----  238 (267)
T ss_dssp             HHCTTCCEEEC--TTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSS-----
T ss_pred             hhCCCCCEEEC--CCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCc-----
Confidence            56889999999  888887654   56789999999999999999773 455555  899999999987664331     


Q ss_pred             CCCcChhhhhccccCceee
Q 037045          404 GEMISLNIISKLRLLEELI  422 (424)
Q Consensus       404 ~~~~~~~~l~~l~~L~~L~  422 (424)
                      ........+..+++|+.|+
T Consensus       239 ~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          239 QSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHHHHCTTCCEES
T ss_pred             chhHHHHHHHHCcccCeEC
Confidence            0112234578888888886

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.68  E-value=2.1e-05  Score=63.47  Aligned_cols=38  Identities=18%  Similarity=0.311  Sum_probs=28.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      +.++|+|+.|+|||||++.++..... ..+ .+++++...
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-~~~~~~~~~   74 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQALE-AGK-NAAYIDAAS   74 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHHHT-TTC-CEEEEETTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHh-cCC-cEEEEcHHH
Confidence            46899999999999999999998753 111 266666544

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.67  E-value=0.00052  Score=62.44  Aligned_cols=23  Identities=43%  Similarity=0.638  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -+.|+|++|+|||++|+.+++..
T Consensus        52 ~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           52 NILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999987

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.65  E-value=0.0014  Score=57.84  Aligned_cols=142  Identities=14%  Similarity=0.150  Sum_probs=73.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-ccCcEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-NDRSYV   82 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~L   82 (424)
                      +.|+|++|+|||||++.++....     ...+.++..      ++.    ... .   .. .......+.+.. .....+
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~------~~~----~~~-~---~~-~~~~i~~~~~~~~~~~~~i  111 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------DFV----EMF-V---GV-GAARVRDLFETAKRHAPCI  111 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------HHH----HSC-T---TH-HHHHHHHHHHHHTTSSSEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH------HHH----HHH-h---hH-HHHHHHHHHHHHHhcCCeE
Confidence            78999999999999999998773     223343321      111    000 0   00 001111222222 234689


Q ss_pred             EEEcCCCCcc----------------hhhhh--ccCC-CCCC-cEEEEEecchhhhc-------ccCceEEecCCCHHHH
Q 037045           83 LFLDGVSSEI----------------NFKEI--GMHD-DHGR-GKVVFACRSREFCW-------QADGVIHVQQLCQREA  135 (424)
Q Consensus        83 lvlD~~~~~~----------------~~~~~--~~~~-~~~~-~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~  135 (424)
                      +++|+++...                ....+  .+.. .... .-++.+|.......       .....++++..+.++-
T Consensus       112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r  191 (254)
T 1ixz_A          112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR  191 (254)
T ss_dssp             EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred             EEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHH
Confidence            9999985321                01111  0111 1122 23334554433332       3456788888888888


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      .++++...........   .....+++.+.|+-
T Consensus       192 ~~il~~~~~~~~~~~~---~~~~~la~~~~G~~  221 (254)
T 1ixz_A          192 EQILRIHARGKPLAED---VDLALLAKRTPGFV  221 (254)
T ss_dssp             HHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred             HHHHHHHHcCCCCCcc---cCHHHHHHHcCCCC
Confidence            8888776643211111   12345777777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.65  E-value=3.7e-05  Score=64.61  Aligned_cols=112  Identities=16%  Similarity=0.094  Sum_probs=81.4

Q ss_pred             HHhcccCCCcEEEccCC-CCCc-----CChhhhcccccceeeeccccccccc-----CChhhhccCCCCEEEecCCcCcc
Q 037045          303 SFFDYMCHLQLLDLHET-NIGC-----LPPSISRLINLNALFLRSSCSLLLQ-----LPAEIGRLQKLEILDVSHTKVQC  371 (424)
Q Consensus       303 ~~~~~~~~L~~L~l~~~-~~~~-----~p~~~~~l~~L~~l~l~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~i~~  371 (424)
                      ..+...+.|+.|++++| .++.     +...+...++|++|++  +++.++.     +...+...+.|+.|++++|.+..
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~L--s~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSI--VGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEEC--TTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEEC--cCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            34566889999999999 8833     3344556789999999  7777763     34556667899999999999874


Q ss_pred             -----cchhhhcCCCCCEeee--ccccCCCCcccCCCCCCCCcChhhhhccccCceeecC
Q 037045          372 -----LPSEIGQLIELKYLRV--SRVENVGNHTHADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       372 -----lp~~i~~l~~L~~l~l--~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                           +...+...++|++|++  ++|.+...        +.......+...++|++|+|+
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~--------g~~~l~~~L~~n~~L~~L~L~  159 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNN--------VEMEIANMLEKNTTLLKFGYH  159 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHH--------HHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHH--------HHHHHHHHHHhCCCcCEEecc
Confidence                 4556778889999999  77865311        011233455666889999875

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.63  E-value=0.0016  Score=58.20  Aligned_cols=119  Identities=14%  Similarity=0.164  Sum_probs=66.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC--HHHHHHHHHHHhcccccccChhHHHHHHHHHh-ccCc
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN--IRDIQEIILERLKVNAKELNNDLRADIISKEL-NDRS   80 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~   80 (424)
                      +.|+|++|+||||||+.++....  .   ..+++......+  .....                 .....+.+.. ....
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~--~---~~i~i~g~~l~~~~~~~~~-----------------~~i~~vf~~a~~~~p  104 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESG--L---NFISVKGPELLNMYVGESE-----------------RAVRQVFQRAKNSAP  104 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTT--C---EEEEEETTTTCSSTTHHHH-----------------HHHHHHHHHHHHTCS
T ss_pred             EEEECCCCCcHHHHHHHHHHHcC--C---CEEEEEcHHHHhhhhhHHH-----------------HHHHHHHHHHHhcCC
Confidence            78999999999999999999763  2   244444322111  00000                 0111111111 2357


Q ss_pred             EEEEEcCCCCcch-------------hhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHH
Q 037045           81 YVLFLDGVSSEIN-------------FKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAK  136 (424)
Q Consensus        81 ~LlvlD~~~~~~~-------------~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~  136 (424)
                      +++++|+++....             ...+  .+.  ......-++.+|.......       .-+..+.++.-+.++-.
T Consensus       105 ~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~  184 (274)
T 2x8a_A          105 CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL  184 (274)
T ss_dssp             EEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHH
T ss_pred             CeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHH
Confidence            8999999875310             1111  000  1122333444555443333       34667788888999989


Q ss_pred             HHHHHHhc
Q 037045          137 KLFWEVVG  144 (424)
Q Consensus       137 ~l~~~~~~  144 (424)
                      ++++....
T Consensus       185 ~il~~~~~  192 (274)
T 2x8a_A          185 AILKTITK  192 (274)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99987764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.62  E-value=0.00017  Score=73.68  Aligned_cols=142  Identities=13%  Similarity=0.130  Sum_probs=79.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      =|.++|++|+|||+||+.+++..  ..+   .+.++...-          ..    .............+.......+++
T Consensus       240 GILL~GPPGTGKT~LAraiA~el--g~~---~~~v~~~~l----------~s----k~~gese~~lr~lF~~A~~~~PsI  300 (806)
T 3cf2_A          240 GILLYGPPGTGKTLIARAVANET--GAF---FFLINGPEI----------MS----KLAGESESNLRKAFEEAEKNAPAI  300 (806)
T ss_dssp             EEEEECCTTSCHHHHHHHHHTTT--TCE---EEEEEHHHH----------HS----SCTTHHHHHHHHHHHHHTTSCSEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh--CCe---EEEEEhHHh----------hc----ccchHHHHHHHHHHHHHHHcCCeE
Confidence            47899999999999999999977  222   344442210          00    001111111122222233456899


Q ss_pred             EEEcCCCCcc-------------hhhhh-----ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHHH
Q 037045           83 LFLDGVSSEI-------------NFKEI-----GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAKK  137 (424)
Q Consensus        83 lvlD~~~~~~-------------~~~~~-----~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~~  137 (424)
                      |+||+++...             ...++     ++ ....+..||.||.......       .-...+++..-+.++-.+
T Consensus       301 IfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~-~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~  379 (806)
T 3cf2_A          301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL-KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE  379 (806)
T ss_dssp             EEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHC-CGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHH
T ss_pred             EEEehhcccccccCCCCChHHHHHHHHHHHHHhcc-cccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHH
Confidence            9999987531             01122     11 1222334555555433322       345678888888888889


Q ss_pred             HHHHHhccc-CCCCccHHHHHHHHHHhcCCch
Q 037045          138 LFWEVVGVH-LKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       138 l~~~~~~~~-~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      +++...... .....    ....|++.+.|+-
T Consensus       380 IL~~~l~~~~~~~dv----dl~~lA~~T~Gfs  407 (806)
T 3cf2_A          380 ILQIHTKNMKLADDV----DLEQVANETHGHV  407 (806)
T ss_dssp             HHHHTCSSSEECTTC----CHHHHHHHCCSCC
T ss_pred             HHHHHhcCCCCCccc----CHHHHHHhcCCCC
Confidence            888766443 11122    2456888888764

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.62  E-value=0.0016  Score=58.37  Aligned_cols=142  Identities=13%  Similarity=0.138  Sum_probs=73.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-ccCcEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-NDRSYV   82 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~L   82 (424)
                      +.|+|++|+|||||++.++....     ...+.++..      ++..    ...    .. .......+.+.. .....+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~------~~~~----~~~----~~-~~~~i~~~~~~~~~~~~~i  135 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------DFVE----MFV----GV-GAARVRDLFETAKRHAPCI  135 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------HHHH----STT----TH-HHHHHHHHHHHHHTSCSEE
T ss_pred             EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH------HHHH----HHh----hH-HHHHHHHHHHHHHhcCCcE
Confidence            78999999999999999998773     223444321      1110    000    00 001111122222 234689


Q ss_pred             EEEcCCCCcc----------------hhhhh--ccCC-CCCC-cEEEEEecchhhhc-------ccCceEEecCCCHHHH
Q 037045           83 LFLDGVSSEI----------------NFKEI--GMHD-DHGR-GKVVFACRSREFCW-------QADGVIHVQQLCQREA  135 (424)
Q Consensus        83 lvlD~~~~~~----------------~~~~~--~~~~-~~~~-~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~  135 (424)
                      +++|+++...                .+..+  .+.. .... .-++.+|.......       .....++++..+.++-
T Consensus       136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r  215 (278)
T 1iy2_A          136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR  215 (278)
T ss_dssp             EEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred             EehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHH
Confidence            9999985321                01111  1111 1112 23334554433332       3456788888899888


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      .+++............   .....+++.+.|+.
T Consensus       216 ~~il~~~~~~~~~~~~---~~~~~la~~~~G~~  245 (278)
T 1iy2_A          216 EQILRIHARGKPLAED---VDLALLAKRTPGFV  245 (278)
T ss_dssp             HHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred             HHHHHHHHccCCCCcc---cCHHHHHHHcCCCC
Confidence            8888876643211111   12445777777765

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=97.59  E-value=0.00076  Score=61.24  Aligned_cols=124  Identities=14%  Similarity=0.062  Sum_probs=74.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccC--CCCceEEEEEecc-CCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhcc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGES--RRFDIIFWENINT-DGNIRDIQEIILERLKVNAKELNNDLRADIISKELND   78 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~--~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~   78 (424)
                      +...++|+.|+||||+|+.+++.....  .+.+ +.+++... ....+++ +++........               ..+
T Consensus        19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p---------------~~~   81 (305)
T 2gno_A           19 ISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP---------------ELY   81 (305)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC---------------SSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc---------------ccC
Confidence            467899999999999999998863211  2333 34555432 2333333 22333332111               124


Q ss_pred             CcEEEEEcCCCCcc--hhhhh-c-cCCCCCCcEEEEEecch-hhhc--ccCceEEecCCCHHHHHHHHHHHh
Q 037045           79 RSYVLFLDGVSSEI--NFKEI-G-MHDDHGRGKVVFACRSR-EFCW--QADGVIHVQQLCQREAKKLFWEVV  143 (424)
Q Consensus        79 ~~~LlvlD~~~~~~--~~~~~-~-~~~~~~~~~iiittr~~-~~~~--~~~~~~~l~~l~~~~~~~l~~~~~  143 (424)
                      ++-++|+|+++...  ..+.+ . +-.....+.+|++|.+. .+.+  ..- .+++.++++++..+.+.+..
T Consensus        82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~  152 (305)
T 2gno_A           82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI  152 (305)
T ss_dssp             SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred             CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence            56799999998763  22323 1 11233456666665443 3333  333 99999999999999998876

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.55  E-value=0.017  Score=53.09  Aligned_cols=51  Identities=14%  Similarity=0.144  Sum_probs=38.0

Q ss_pred             ceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHH
Q 037045          123 GVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIG  175 (424)
Q Consensus       123 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a  175 (424)
                      ....+++.+.++..+++.+.+....  ....++.+..|++.+.|.|..+..+.
T Consensus       173 l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~ll  223 (334)
T 1in4_A          173 IILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRLT  223 (334)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             ceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHHH
Confidence            4578999999999999988775331  22335678999999999997654443

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.54  E-value=0.00033  Score=60.30  Aligned_cols=84  Identities=12%  Similarity=0.156  Sum_probs=50.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhccc---------c-cccCh---hHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVN---------A-KELNN---DLR   68 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---------~-~~~~~---~~~   68 (424)
                      .++.|.|++|+|||||+..++. .    .-..++|++.....+...+.. +....+..         . ...+.   .+.
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRV   94 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHH
Confidence            4789999999999999999998 2    124688888766555554443 33322211         0 11111   223


Q ss_pred             HHHHHHHhccCcEEEEEcCCCCc
Q 037045           69 ADIISKELNDRSYVLFLDGVSSE   91 (424)
Q Consensus        69 ~~~l~~~l~~~~~LlvlD~~~~~   91 (424)
                      ...++.....+.-++|+|.+...
T Consensus        95 ~~~~~~l~~~~~~lliiD~~~~~  117 (220)
T 2cvh_A           95 IGSLKKTVDSNFALVVVDSITAH  117 (220)
T ss_dssp             HHHHHHHCCTTEEEEEEECCCCC
T ss_pred             HHHHHHHhhcCCCEEEEcCcHHH
Confidence            34444444334668999987654

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.52  E-value=0.0003  Score=65.07  Aligned_cols=83  Identities=13%  Similarity=0.151  Sum_probs=55.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      +++.|+|++|+|||||+.+++....  ..-..++|++.....+..     .++.++...      ...+.++....+...
T Consensus        62 ~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l  134 (356)
T 3hr8_A           62 RIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDEL  134 (356)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence            4789999999999999999998873  222357888876665544     344554332      344455555555555


Q ss_pred             hcc-CcEEEEEcCCCCc
Q 037045           76 LND-RSYVLFLDGVSSE   91 (424)
Q Consensus        76 l~~-~~~LlvlD~~~~~   91 (424)
                      .+. +.-++|+|.+...
T Consensus       135 ~~~~~~dlvVIDSi~~l  151 (356)
T 3hr8_A          135 VRSGVVDLIVVDSVAAL  151 (356)
T ss_dssp             HHTSCCSEEEEECTTTC
T ss_pred             hhhcCCCeEEehHhhhh
Confidence            543 4458889988665

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.52  E-value=0.00011  Score=61.20  Aligned_cols=24  Identities=42%  Similarity=0.516  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+.|+|++|+|||++|+.+++...
T Consensus        45 ~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           45 NPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999998873

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.52  E-value=0.0023  Score=62.04  Aligned_cols=139  Identities=12%  Similarity=0.107  Sum_probs=77.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhcc----C
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELND----R   79 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~----~   79 (424)
                      +.|+|++|+|||+||+.++....     ...+.++...-.+                  .........+...++.    .
T Consensus        67 vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~------------------~~~g~~~~~v~~lfq~a~~~~  123 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE------------------MFVGVGAARVRDLFETAKRHA  123 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS------------------SCTTHHHHHHHHHTTTSSSSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH------------------hhhhhHHHHHHHHHHHHHhcC
Confidence            78999999999999999998773     2234454432111                  0011122233333432    3


Q ss_pred             cEEEEEcCCCCcc----------------hhhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCH
Q 037045           80 SYVLFLDGVSSEI----------------NFKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQ  132 (424)
Q Consensus        80 ~~LlvlD~~~~~~----------------~~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~  132 (424)
                      .+++++|+++...                .+.++  .+.  .......++.+|.......       ..+..+.++..+.
T Consensus       124 p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~  203 (499)
T 2dhr_A          124 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV  203 (499)
T ss_dssp             SCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCH
T ss_pred             CCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCH
Confidence            5899999986431                01122  111  1122234444555443322       3456788888888


Q ss_pred             HHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          133 REAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      ++-.++++..+........   .....|++.+.|+.
T Consensus       204 ~~R~~IL~~~~~~~~l~~d---v~l~~lA~~t~G~~  236 (499)
T 2dhr_A          204 KGREQILRIHARGKPLAED---VDLALLAKRTPGFV  236 (499)
T ss_dssp             HHHHHHHHHTTSSSCCCCS---STTHHHHTTSCSCC
T ss_pred             HHHHHHHHHHHhcCCCChH---HHHHHHHHhcCCCC
Confidence            8888888766543211111   12456888888876

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.52  E-value=0.00047  Score=66.80  Aligned_cols=123  Identities=20%  Similarity=0.206  Sum_probs=63.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCC---C-c-eEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRR---F-D-IIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN   77 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~   77 (424)
                      -+.|+|++|+|||++|+.+++.......   . + .++.++++.             .    ............+...-.
T Consensus       203 ~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~-------------~----~~g~~e~~~~~~~~~~~~  265 (468)
T 3pxg_A          203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT-------------K----YRGEFEDRLKKVMDEIRQ  265 (468)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------------CTTHHHHHHHHHT
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-------------c----ccchHHHHHHHHHHHHHh
Confidence            3679999999999999999998632111   1 1 133333330             0    000001111122222223


Q ss_pred             cCcEEEEEcCCCCcchhhhhccCC-CCCCcEEEEEecchhh------hc---ccCceEEecCCCHHHHHHHHHHHhcc
Q 037045           78 DRSYVLFLDGVSSEINFKEIGMHD-DHGRGKVVFACRSREF------CW---QADGVIHVQQLCQREAKKLFWEVVGV  145 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~~~~~~~~~~-~~~~~~iiittr~~~~------~~---~~~~~~~l~~l~~~~~~~l~~~~~~~  145 (424)
                      .++.+|++|.  .. +......+. ......+|.+|.....      ..   .....+.++..+.++..+++......
T Consensus       266 ~~~~iLfiD~--~~-~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~  340 (468)
T 3pxg_A          266 AGNIILFIDA--AI-DASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDR  340 (468)
T ss_dssp             CCCCEEEECC-----------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred             cCCeEEEEeC--ch-hHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHH
Confidence            5678999992  11 222221221 2223456665554431      11   44457999999999999999876643

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.49  E-value=0.00018  Score=57.68  Aligned_cols=86  Identities=15%  Similarity=0.080  Sum_probs=48.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -|.|+|++|+|||++|+.+++...  ..-...+ +++....+.                    ......+..   .+...
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~~~--~~~~~~v-~~~~~~~~~--------------------~~~~~~~~~---a~~g~   79 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQFGR--NAQGEFV-YRELTPDNA--------------------PQLNDFIAL---AQGGT   79 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHSST--TTTSCCE-EEECCTTTS--------------------SCHHHHHHH---HTTSC
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCC--ccCCCEE-EECCCCCcc--------------------hhhhcHHHH---cCCcE
Confidence            378999999999999999998753  2111223 665543221                    000111111   13457


Q ss_pred             EEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecc
Q 037045           83 LFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRS  114 (424)
Q Consensus        83 lvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~  114 (424)
                      |+||+++....  ...+  .+.......++|.||..
T Consensus        80 l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~  115 (145)
T 3n70_A           80 LVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT  115 (145)
T ss_dssp             EEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred             EEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence            89999987642  2222  11233345677777754

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.46  E-value=0.00046  Score=62.14  Aligned_cols=84  Identities=12%  Similarity=0.118  Sum_probs=55.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHH-HHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLR-ADIISKE   75 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~-~~~l~~~   75 (424)
                      ++-|+|++|+|||||+.+++........-..++|++.....+..     -++.++...      ...+.++. ...+...
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l  104 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL  104 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence            57899999999999999998877421113468999987776654     256666543      33344444 3333332


Q ss_pred             --hc-cCcEEEEEcCCCCc
Q 037045           76 --LN-DRSYVLFLDGVSSE   91 (424)
Q Consensus        76 --l~-~~~~LlvlD~~~~~   91 (424)
                        ++ .+.-++|+|-+...
T Consensus       105 ~~i~~~~~~lvVIDSI~aL  123 (333)
T 3io5_A          105 DAIERGEKVVVFIDSLGNL  123 (333)
T ss_dssp             HTCCTTCCEEEEEECSTTC
T ss_pred             HHhhccCceEEEEeccccc
Confidence              33 35679999988765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.45  E-value=5.4e-05  Score=62.39  Aligned_cols=87  Identities=13%  Similarity=0.115  Sum_probs=61.1

Q ss_pred             cccccEEEccCCCCCCCChHHhcccCCCcEEEccCCC-CCc-CChhhhcc----cccceeeecccccccccC-Chhhhcc
Q 037045          284 CCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETN-IGC-LPPSISRL----INLNALFLRSSCSLLLQL-PAEIGRL  356 (424)
Q Consensus       284 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~-~p~~~~~l----~~L~~l~l~~~~~~~~~l-p~~~~~l  356 (424)
                      -..|+.|+++++.++...-..+..+++|+.|++++|. +++ .-..+..+    ++|++|+++ .|..+++- -..+..+
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls-~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII-SCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEE-SCTTCCHHHHHHGGGC
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcC-CCCcCCHHHHHHHhcC
Confidence            3468888888888876544446778889999998884 533 22345543    478999995 66666632 2356788


Q ss_pred             CCCCEEEecCCc-Ccc
Q 037045          357 QKLEILDVSHTK-VQC  371 (424)
Q Consensus       357 ~~L~~L~l~~~~-i~~  371 (424)
                      ++|+.|+++++. ++.
T Consensus       139 ~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TTCCEEEEESCTTCCC
T ss_pred             CCCCEEECCCCCCCCc
Confidence            999999999986 664

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.45  E-value=0.00012  Score=66.21  Aligned_cols=71  Identities=14%  Similarity=0.176  Sum_probs=44.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +++.|+|++|+|||+||.+++...     -..+.|++......           +..  ...+.++....+.+.+...+ 
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~~-----G~~VlyIs~~~eE~-----------v~~--~~~~le~~l~~i~~~l~~~~-  184 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEAL-----GGKDKYATVRFGEP-----------LSG--YNTDFNVFVDDIARAMLQHR-  184 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHHH-----HTTSCCEEEEBSCS-----------STT--CBCCHHHHHHHHHHHHHHCS-
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhC-----CCCEEEEEecchhh-----------hhh--hhcCHHHHHHHHHHHHhhCC-
Confidence            467899999999999999998862     11355666611111           000  00233444555555665666 


Q ss_pred             EEEEcCCCCc
Q 037045           82 VLFLDGVSSE   91 (424)
Q Consensus        82 LlvlD~~~~~   91 (424)
                      ++|+|++...
T Consensus       185 LLVIDsI~aL  194 (331)
T 2vhj_A          185 VIVIDSLKNV  194 (331)
T ss_dssp             EEEEECCTTT
T ss_pred             EEEEeccccc
Confidence            9999998765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.41  E-value=0.00028  Score=73.70  Aligned_cols=149  Identities=14%  Similarity=0.064  Sum_probs=72.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCC---C--CceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESR---R--FDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN   77 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~---~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~   77 (424)
                      -+.|+|++|+|||++|+.+++......   .  -..+++++++.-.....             ...........+.+.+.
T Consensus       193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~-------------~~g~~~~~l~~~~~~~~  259 (854)
T 1qvr_A          193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAK-------------YRGEFEERLKAVIQEVV  259 (854)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------------CHHHHHHHHHHHHH
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCc-------------cchHHHHHHHHHHHHHH
Confidence            368999999999999999999863211   1  12355555432211000             00011122222222222


Q ss_pred             --cCcEEEEEcCCCCcch-------hh--hhccC-CCCCCcEEEEEecchhh-----hc---ccCceEEecCCCHHHHHH
Q 037045           78 --DRSYVLFLDGVSSEIN-------FK--EIGMH-DDHGRGKVVFACRSREF-----CW---QADGVIHVQQLCQREAKK  137 (424)
Q Consensus        78 --~~~~LlvlD~~~~~~~-------~~--~~~~~-~~~~~~~iiittr~~~~-----~~---~~~~~~~l~~l~~~~~~~  137 (424)
                        +++.+|+||+++....       ++  .+..+ -......+|.+|.....     ..   .....+.+++.+.++..+
T Consensus       260 ~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~  339 (854)
T 1qvr_A          260 QSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETIS  339 (854)
T ss_dssp             TTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHH
T ss_pred             hcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHH
Confidence              3679999999987531       11  11001 11223445555544322     11   444569999999999999


Q ss_pred             HHHHHhccc--CCCCccHHHHHHHHHHhc
Q 037045          138 LFWEVVGVH--LKKYPDIELVADSIVKEC  164 (424)
Q Consensus       138 l~~~~~~~~--~~~~~~~~~~~~~I~~~~  164 (424)
                      ++.......  .......++....+++.+
T Consensus       340 iL~~~~~~~~~~~~~~i~~~al~~~~~ls  368 (854)
T 1qvr_A          340 ILRGLKEKYEVHHGVRISDSAIIAAATLS  368 (854)
T ss_dssp             HHHHHHHHHHHHTTCEECHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhhcCCCCCHHHHHHHHHHH
Confidence            997544211  111222244455555555

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.40  E-value=0.00047  Score=63.91  Aligned_cols=83  Identities=17%  Similarity=0.197  Sum_probs=54.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      +++.|+|++|+||||||.+++....  ..-..++|++.....+..     .++.++...      ...+.++....+...
T Consensus        62 ~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l  134 (349)
T 2zr9_A           62 RVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADML  134 (349)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence            4789999999999999999997763  223458899987765543     244454332      223444545555544


Q ss_pred             hcc-CcEEEEEcCCCCc
Q 037045           76 LND-RSYVLFLDGVSSE   91 (424)
Q Consensus        76 l~~-~~~LlvlD~~~~~   91 (424)
                      .+. +.-+||+|.+...
T Consensus       135 ~~~~~~~lIVIDsl~~l  151 (349)
T 2zr9_A          135 VRSGALDIIVIDSVAAL  151 (349)
T ss_dssp             HTTTCCSEEEEECGGGC
T ss_pred             HhcCCCCEEEEcChHhh
Confidence            443 3558999987654

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.39  E-value=0.00053  Score=63.86  Aligned_cols=83  Identities=18%  Similarity=0.163  Sum_probs=55.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      +++.|+|++|+||||||.+++....  ..-..++|++.....+..     .++.++...      ...+.++....+...
T Consensus        75 ~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l  147 (366)
T 1xp8_A           75 RITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELL  147 (366)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence            4789999999999999999988763  222468999987766543     234444332      223445555566555


Q ss_pred             hccC-cEEEEEcCCCCc
Q 037045           76 LNDR-SYVLFLDGVSSE   91 (424)
Q Consensus        76 l~~~-~~LlvlD~~~~~   91 (424)
                      .+.. --+||+|.+...
T Consensus       148 ~~~~~~~lVVIDsl~~l  164 (366)
T 1xp8_A          148 VRSGAIDVVVVDSVAAL  164 (366)
T ss_dssp             HTTTCCSEEEEECTTTC
T ss_pred             HhcCCCCEEEEeChHHh
Confidence            5443 458999987654

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.37  E-value=0.00048  Score=63.94  Aligned_cols=83  Identities=17%  Similarity=0.173  Sum_probs=52.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      +++.|.|++|+||||||.+++....  ..-..++|++.....+...     +..++...      ...+.++....++..
T Consensus        64 ~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~l  136 (356)
T 1u94_A           64 RIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL  136 (356)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHHH
Confidence            4789999999999999999998763  2224689999877665432     34444332      122334444444443


Q ss_pred             hcc-CcEEEEEcCCCCc
Q 037045           76 LND-RSYVLFLDGVSSE   91 (424)
Q Consensus        76 l~~-~~~LlvlD~~~~~   91 (424)
                      .+. ..-+||+|.+...
T Consensus       137 ~~~~~~~lVVIDsl~~l  153 (356)
T 1u94_A          137 ARSGAVDVIVVDSVAAL  153 (356)
T ss_dssp             HHHTCCSEEEEECGGGC
T ss_pred             HhccCCCEEEEcCHHHh
Confidence            333 3448899987544

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.37  E-value=0.0017  Score=62.64  Aligned_cols=51  Identities=8%  Similarity=-0.143  Sum_probs=35.9

Q ss_pred             ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhc-CCchHHHH
Q 037045          120 QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKEC-GGMPYMLK  172 (424)
Q Consensus       120 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~-~g~Plai~  172 (424)
                      .....+.+.+++.++..+++..++....  ....++.+..|++.+ .|.|....
T Consensus       356 sR~~~~~~~~~~~~e~~~iL~~~~~~~~--~~~~~~~~~~i~~~a~~g~~r~a~  407 (456)
T 2c9o_A          356 DRVMIIRTMLYTPQEMKQIIKIRAQTEG--INISEEALNHLGEIGTKTTLRYSV  407 (456)
T ss_dssp             TTEEEEECCCCCHHHHHHHHHHHHHHHT--CCBCHHHHHHHHHHHHHSCHHHHH
T ss_pred             hhcceeeCCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHccCCCHHHHH
Confidence            5556679999999999999988764321  122345667788888 77776443

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.36  E-value=0.00073  Score=62.05  Aligned_cols=89  Identities=16%  Similarity=0.244  Sum_probs=55.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCC----CCceEEEEEeccCCCHHHHHHHHHHHhcccc----------cccChh-
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESR----RFDIIFWENINTDGNIRDIQEIILERLKVNA----------KELNND-   66 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~~-   66 (424)
                      +++.|+|++|+||||||.+++.......    .-..++|++....++.+.+.+ +++.++...          ...+.+ 
T Consensus       108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~~  186 (324)
T 2z43_A          108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTDH  186 (324)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred             cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHHH
Confidence            4789999999999999999998753111    024689999887766666553 344454321          111222 


Q ss_pred             --HHHHHHHHHhcc--CcEEEEEcCCCCc
Q 037045           67 --LRADIISKELND--RSYVLFLDGVSSE   91 (424)
Q Consensus        67 --~~~~~l~~~l~~--~~~LlvlD~~~~~   91 (424)
                        +....+.+.++.  +.-+||+|.+...
T Consensus       187 ~~~~l~~l~~~~~~~~~~~lvVIDsl~~l  215 (324)
T 2z43_A          187 QIAIVDDLQELVSKDPSIKLIVVDSVTSH  215 (324)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred             HHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence              233445555543  4558899987654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.34  E-value=0.00019  Score=59.13  Aligned_cols=80  Identities=15%  Similarity=0.211  Sum_probs=52.4

Q ss_pred             CCcEEEccCCCCCc-CChhhhcccccceeeecccccccccC-Chhhhc----cCCCCEEEecCCc-Cc--ccchhhhcCC
Q 037045          310 HLQLLDLHETNIGC-LPPSISRLINLNALFLRSSCSLLLQL-PAEIGR----LQKLEILDVSHTK-VQ--CLPSEIGQLI  380 (424)
Q Consensus       310 ~L~~L~l~~~~~~~-~p~~~~~l~~L~~l~l~~~~~~~~~l-p~~~~~----l~~L~~L~l~~~~-i~--~lp~~i~~l~  380 (424)
                      .|+.||++++.+.+ --..+..+++|+.|+++ .|..+++- -..+..    +++|+.|++++|. ++  .+ ..+.+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~-~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLC-KCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEE-SCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeC-CCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence            58888888887732 23456778888888884 55555532 223443    2468888888875 76  23 3467778


Q ss_pred             CCCEeeecccc
Q 037045          381 ELKYLRVSRVE  391 (424)
Q Consensus       381 ~L~~l~l~~n~  391 (424)
                      +|++|++++|+
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            88888888875

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.33  E-value=0.0015  Score=56.96  Aligned_cols=89  Identities=16%  Similarity=0.173  Sum_probs=52.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCC----CCceEEEEEeccCCCHHHHHHHHHHHhcccc----------cccChhH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESR----RFDIIFWENINTDGNIRDIQEIILERLKVNA----------KELNNDL   67 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~~~   67 (424)
                      .++.|.|++|+|||||+..++.......    .-..++|++.........+. +++..++...          ...+..+
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~  103 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDH  103 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence            4789999999999999999998642111    23568998876654544433 3334443221          1112222


Q ss_pred             H---HHHHHHHhcc-CcEEEEEcCCCCc
Q 037045           68 R---ADIISKELND-RSYVLFLDGVSSE   91 (424)
Q Consensus        68 ~---~~~l~~~l~~-~~~LlvlD~~~~~   91 (424)
                      .   ...+.+.+.. +.-++|+|++...
T Consensus       104 ~~~~~~~~~~~~~~~~~~lliiD~~~~~  131 (243)
T 1n0w_A          104 QTQLLYQASAMMVESRYALLIVDSATAL  131 (243)
T ss_dssp             HHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred             HHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence            1   2234444433 4568889987654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.30  E-value=0.0012  Score=65.10  Aligned_cols=131  Identities=14%  Similarity=0.185  Sum_probs=64.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      ..+.|+|++|+||||||+.++...  ...|   ..+.++...+...+.......++.     ........+. ......-
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~~l--~~~~---~~i~~~~~~~~~~~~g~~~~~ig~-----~~~~~~~~~~-~a~~~~~  177 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAKSL--GRKF---VRISLGGVRDESEIRGHRRTYVGA-----MPGRIIQGMK-KAGKLNP  177 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHHHH--TCEE---EEECCCC-------------------------CHHHHHH-TTCSSSE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhc--CCCe---EEEEecccchhhhhhhHHHHHhcc-----CchHHHHHHH-HhhccCC
Confidence            468999999999999999999987  2222   223333322211111111111111     0111111111 1222344


Q ss_pred             EEEEcCCCCcchh------hhh-c---------cCCC-------CCCcEEEEEecchhhhc----ccCceEEecCCCHHH
Q 037045           82 VLFLDGVSSEINF------KEI-G---------MHDD-------HGRGKVVFACRSREFCW----QADGVIHVQQLCQRE  134 (424)
Q Consensus        82 LlvlD~~~~~~~~------~~~-~---------~~~~-------~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~  134 (424)
                      ++++|+++....-      +.+ .         +...       .....+|.||.......    .....+++.+++.++
T Consensus       178 vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e  257 (543)
T 3m6a_A          178 VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIE  257 (543)
T ss_dssp             EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHH
T ss_pred             EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHH
Confidence            8889998865211      111 0         0000       13345665665443332    333578999999999


Q ss_pred             HHHHHHHHh
Q 037045          135 AKKLFWEVV  143 (424)
Q Consensus       135 ~~~l~~~~~  143 (424)
                      -.+++.+..
T Consensus       258 ~~~Il~~~l  266 (543)
T 3m6a_A          258 KLEIVKDHL  266 (543)
T ss_dssp             HHHHHHHTH
T ss_pred             HHHHHHHHH
Confidence            888887655

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.27  E-value=0.0014  Score=60.74  Aligned_cols=55  Identities=15%  Similarity=0.172  Sum_probs=39.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCC----CCceEEEEEeccCCCHHHHHHHHHHHhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESR----RFDIIFWENINTDGNIRDIQEIILERLK   57 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~   57 (424)
                      +++.|+|++|+||||||.+++.......    .-..++|++....++.+.+.+ ++..++
T Consensus       123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g  181 (343)
T 1v5w_A          123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN  181 (343)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence            4789999999999999999998753211    234689999887767666553 334444

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.27  E-value=0.0012  Score=67.98  Aligned_cols=123  Identities=19%  Similarity=0.161  Sum_probs=64.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCC---C-Cce-EEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESR---R-FDI-IFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN   77 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~---~-f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~   77 (424)
                      -+.|+|++|+|||++|+.+++......   . .+. ++.++.                 +..............+.....
T Consensus       203 ~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----------------g~~~~G~~e~~l~~~~~~~~~  265 (758)
T 3pxi_A          203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----------------GTKYRGEFEDRLKKVMDEIRQ  265 (758)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------------CTTHHHHHHHHHT
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------------cccccchHHHHHHHHHHHHHh
Confidence            367999999999999999999863211   1 111 222222                 000011111122222333333


Q ss_pred             cCcEEEEEcCCCCcchhhhhccC-CCCCCcEEEEEecchhh------hc---ccCceEEecCCCHHHHHHHHHHHhcc
Q 037045           78 DRSYVLFLDGVSSEINFKEIGMH-DDHGRGKVVFACRSREF------CW---QADGVIHVQQLCQREAKKLFWEVVGV  145 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~~~~~~~~~-~~~~~~~iiittr~~~~------~~---~~~~~~~l~~l~~~~~~~l~~~~~~~  145 (424)
                      .++.+|++|..  . +......+ -......+|.+|.....      ..   .....+.++..+.++..+++......
T Consensus       266 ~~~~iLfiD~~--~-~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~  340 (758)
T 3pxi_A          266 AGNIILFIDAA--I-DASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDR  340 (758)
T ss_dssp             CCCCEEEECC-----------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred             cCCEEEEEcCc--h-hHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence            56889999921  1 22222122 22334566666665442      11   34467999999999999999866543

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.25  E-value=0.0013  Score=67.95  Aligned_cols=121  Identities=16%  Similarity=0.212  Sum_probs=68.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      .+.++|++|+|||++|+.+++...  ..-...+.++++...+.....               .......++   +....+
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~~~~~~~~~---------------~~~l~~~~~---~~~~~v  582 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSEYMEKHSTS---------------GGQLTEKVR---RKPYSV  582 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGGGCSSCCCC------------------CHHHHH---HCSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechhcccccccc---------------cchhhHHHH---hCCCeE
Confidence            588999999999999999999872  333345677765542210000               001111111   123458


Q ss_pred             EEEcCCCCcch--hhhh-------ccC------CCCCCcEEEEEecchh-------------hhc----ccCceEEecCC
Q 037045           83 LFLDGVSSEIN--FKEI-------GMH------DDHGRGKVVFACRSRE-------------FCW----QADGVIHVQQL  130 (424)
Q Consensus        83 lvlD~~~~~~~--~~~~-------~~~------~~~~~~~iiittr~~~-------------~~~----~~~~~~~l~~l  130 (424)
                      |+||+++....  ...+       .+.      ....+..||.||....             +.+    .-...+.+.++
T Consensus       583 l~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l  662 (758)
T 3pxi_A          583 VLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSL  662 (758)
T ss_dssp             EEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--
T ss_pred             EEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCC
Confidence            99999987531  1111       111      1234567888887311             111    33368899999


Q ss_pred             CHHHHHHHHHHHh
Q 037045          131 CQREAKKLFWEVV  143 (424)
Q Consensus       131 ~~~~~~~l~~~~~  143 (424)
                      ++++..+++...+
T Consensus       663 ~~~~~~~i~~~~l  675 (758)
T 3pxi_A          663 EKKHLTEIVSLMS  675 (758)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999888876655

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.23  E-value=0.0022  Score=58.19  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|.|+|++|+|||++|+.+++..
T Consensus        27 ~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           27 TVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             CEEEESCTTSCHHHHHHHHHHHS
T ss_pred             cEEEECCCCchHHHHHHHHHHhC
Confidence            47899999999999999999876

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.19  E-value=0.00088  Score=58.05  Aligned_cols=109  Identities=13%  Similarity=0.056  Sum_probs=58.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhccccc--------------------
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAK--------------------   61 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--------------------   61 (424)
                      .+++|.|++|+|||||++.++.....  .-..++|+....  ....+...+. .++....                    
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ   98 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence            47899999999999999999976531  123467766433  3444443332 3332110                    


Q ss_pred             ----ccChhHHHHHHHHHhcc-C--cEEEEEcCCCCcc--h---hhhh--ccC--CCCCCcEEEEEecch
Q 037045           62 ----ELNNDLRADIISKELND-R--SYVLFLDGVSSEI--N---FKEI--GMH--DDHGRGKVVFACRSR  115 (424)
Q Consensus        62 ----~~~~~~~~~~l~~~l~~-~--~~LlvlD~~~~~~--~---~~~~--~~~--~~~~~~~iiittr~~  115 (424)
                          ..+.++....+.+.+.. +  ..++|+|......  +   ...+  .+.  ....+..||++|...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~  168 (235)
T 2w0m_A           99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA  168 (235)
T ss_dssp             TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred             eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence                01233444444443322 3  3499999987432  1   1222  011  123467888888765

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.18  E-value=0.00095  Score=59.34  Aligned_cols=38  Identities=26%  Similarity=0.205  Sum_probs=28.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD   42 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~   42 (424)
                      -|.|+|++|+|||++|+.+++...  ..-...+.++++..
T Consensus        31 ~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~   68 (265)
T 2bjv_A           31 PVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAAL   68 (265)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGS
T ss_pred             CEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCC
Confidence            478999999999999999998763  22223556666654

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.16  E-value=0.0047  Score=63.68  Aligned_cols=128  Identities=21%  Similarity=0.240  Sum_probs=68.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCC----CceEEE-EEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRR----FDIIFW-ENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN   77 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~   77 (424)
                      -+.|+|++|+|||++|+.+++.......    .+..+| ++++.-             +.........+.....+.+.+.
T Consensus       209 ~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l-------------~~~~~~~g~~e~~l~~~~~~~~  275 (758)
T 1r6b_X          209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL-------------LAGTKYRGDFEKRFKALLKQLE  275 (758)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------------CCCCCSSCHHHHHHHHHHHHS
T ss_pred             CeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-------------hccccccchHHHHHHHHHHHHH
Confidence            4689999999999999999987632111    122222 222111             0000011112222222333332


Q ss_pred             -cCcEEEEEcCCCCcc--------hh--hhhccC-CCCCCcEEEEEecchhhh------c---ccCceEEecCCCHHHHH
Q 037045           78 -DRSYVLFLDGVSSEI--------NF--KEIGMH-DDHGRGKVVFACRSREFC------W---QADGVIHVQQLCQREAK  136 (424)
Q Consensus        78 -~~~~LlvlD~~~~~~--------~~--~~~~~~-~~~~~~~iiittr~~~~~------~---~~~~~~~l~~l~~~~~~  136 (424)
                       .++.+|+||+++...        ..  ..+..+ -......+|.+|......      .   .....+.++..+.++..
T Consensus       276 ~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~  355 (758)
T 1r6b_X          276 QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETV  355 (758)
T ss_dssp             SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHH
T ss_pred             hcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHH
Confidence             357899999998651        11  122112 223345666666543321      1   33346889999999999


Q ss_pred             HHHHHHh
Q 037045          137 KLFWEVV  143 (424)
Q Consensus       137 ~l~~~~~  143 (424)
                      +++....
T Consensus       356 ~il~~l~  362 (758)
T 1r6b_X          356 QIINGLK  362 (758)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887655

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.13  E-value=0.00023  Score=56.84  Aligned_cols=23  Identities=17%  Similarity=0.225  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|.|+|++|+|||++|+.+++..
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCCTT
T ss_pred             cEEEECCCCccHHHHHHHHHHhC
Confidence            37799999999999999998866

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.10  E-value=0.0016  Score=59.73  Aligned_cols=89  Identities=18%  Similarity=0.246  Sum_probs=54.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccC----------CCC----ceEEEEEeccCCCHHHHHHHHHHHhcccc-------
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGES----------RRF----DIIFWENINTDGNIRDIQEIILERLKVNA-------   60 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~----------~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------   60 (424)
                      +++.|+|++|+|||+||.+++......          ..-    ..++|++....++.+.+.+. ++.++...       
T Consensus        99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~~l  177 (322)
T 2i1q_A           99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLDNT  177 (322)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHHTE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhcCE
Confidence            478999999999999999999764211          111    46899998887667666543 34444321       


Q ss_pred             ---cccChh---HHHHHHHHHhcc-C-cEEEEEcCCCCc
Q 037045           61 ---KELNND---LRADIISKELND-R-SYVLFLDGVSSE   91 (424)
Q Consensus        61 ---~~~~~~---~~~~~l~~~l~~-~-~~LlvlD~~~~~   91 (424)
                         ...+.+   +....+.+.++. . .-+||+|.+...
T Consensus       178 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l  216 (322)
T 2i1q_A          178 FVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTST  216 (322)
T ss_dssp             EEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHH
Confidence               112222   223344444443 3 448888887543

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.99  E-value=0.00042  Score=57.04  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.+|+|.|++|+||||+++.+++..
T Consensus         1 M~~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            1 MTLIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             -CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999999887

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.97  E-value=0.00026  Score=60.94  Aligned_cols=109  Identities=16%  Similarity=0.016  Sum_probs=61.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc---cccChhHHHHHHHHHhcc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA---KELNNDLRADIISKELND   78 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~l~~~l~~   78 (424)
                      .++.|+|+.|+||||++..++.+..  .+-..++.+......  . ...+++..++...   ......+....+.+.+.+
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~r~~--~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~   87 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLHRLE--YADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFN   87 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhC
Confidence            4788999999999999999998884  333334444322221  1 1123444444332   222223334444443433


Q ss_pred             CcE-EEEEcCCCCcc--hhhhhcc-CCCCCCcEEEEEecchhh
Q 037045           79 RSY-VLFLDGVSSEI--NFKEIGM-HDDHGRGKVVFACRSREF  117 (424)
Q Consensus        79 ~~~-LlvlD~~~~~~--~~~~~~~-~~~~~~~~iiittr~~~~  117 (424)
                      .++ +||+|.++...  .++.+.. .+  .+..||+|-+..+.
T Consensus        88 ~~~dvViIDEaQ~l~~~~ve~l~~L~~--~gi~Vil~Gl~~df  128 (223)
T 2b8t_A           88 DETKVIGIDEVQFFDDRICEVANILAE--NGFVVIISGLDKNF  128 (223)
T ss_dssp             TTCCEEEECSGGGSCTHHHHHHHHHHH--TTCEEEEECCSBCT
T ss_pred             CCCCEEEEecCccCcHHHHHHHHHHHh--CCCeEEEEeccccc
Confidence            445 99999998642  3333311 12  26778888876554

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=96.96  E-value=0.00066  Score=56.76  Aligned_cols=122  Identities=16%  Similarity=0.080  Sum_probs=66.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC---CCHHHHHHHHHHHhccc-----------c---cccCh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD---GNIRDIQEIILERLKVN-----------A---KELNN   65 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~-----------~---~~~~~   65 (424)
                      .|.|++..|.||||+|--++-+.-  .+--.+.++.+.+.   .....+++.+.  +...           .   +....
T Consensus        30 ~i~v~tG~GkGKTTaA~GlalRA~--g~G~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~~~a  105 (196)
T 1g5t_A           30 IIIVFTGNGKGKTTAAFGTAARAV--GHGKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNREADTAAC  105 (196)
T ss_dssp             CEEEEESSSSCHHHHHHHHHHHHH--HTTCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCCcHHHHHHH
Confidence            567888888999999999988873  44345666655442   23334444431  1000           0   00111


Q ss_pred             hHHHHHHHHHhccCcE-EEEEcCCCCc-----chhhhh--ccCCCCCCcEEEEEecchhhhc--ccCceEEec
Q 037045           66 DLRADIISKELNDRSY-VLFLDGVSSE-----INFKEI--GMHDDHGRGKVVFACRSREFCW--QADGVIHVQ  128 (424)
Q Consensus        66 ~~~~~~l~~~l~~~~~-LlvlD~~~~~-----~~~~~~--~~~~~~~~~~iiittr~~~~~~--~~~~~~~l~  128 (424)
                      .......++.+.+.+| |||+|++-..     ...+++  .+...-....+|+|+|...-..  ..+.+-+|.
T Consensus       106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~  178 (196)
T 1g5t_A          106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELR  178 (196)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeec
Confidence            2233445556666677 9999997432     122222  1123445678999999854332  334444444

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.96  E-value=0.00069  Score=61.71  Aligned_cols=37  Identities=19%  Similarity=0.459  Sum_probs=26.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEe
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENI   39 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~   39 (424)
                      +-+.|+|++|+|||+||..+++.... .....+.++.+
T Consensus       153 ~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~  189 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF  189 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence            35789999999999999999998741 22223555554

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.95  E-value=0.0029  Score=59.53  Aligned_cols=56  Identities=11%  Similarity=0.100  Sum_probs=37.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCC----CCceEEEEEeccCCCHHHHHHHHHHHhcc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESR----RFDIIFWENINTDGNIRDIQEIILERLKV   58 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~   58 (424)
                      .++.|.|++|+|||||+..++-......    .-..++|++.........+. .+++.++.
T Consensus       179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl  238 (400)
T 3lda_A          179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGL  238 (400)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCC
Confidence            4789999999999999998874432111    23468898876655555443 35555543

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=96.85  E-value=0.025  Score=52.14  Aligned_cols=151  Identities=8%  Similarity=-0.060  Sum_probs=93.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      ++..++|+.|.||++.+..+.+... ...|+....+.+....+..++...+..                   .-+-+.+-
T Consensus        19 ~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~plf~~~k   78 (343)
T 1jr3_D           19 AAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAIFSLCQA-------------------MSLFASRQ   78 (343)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHHHHHHHH-------------------HHHCCSCE
T ss_pred             cEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHHHHHhcC-------------------cCCccCCe
Confidence            4788999999999999999988763 223432222223333344433322211                   11235677


Q ss_pred             EEEEcCCCC-c--chhhhh--ccCCCCCCcEEEEEecc-------hhhhc---ccCceEEecCCCHHHHHHHHHHHhccc
Q 037045           82 VLFLDGVSS-E--INFKEI--GMHDDHGRGKVVFACRS-------REFCW---QADGVIHVQQLCQREAKKLFWEVVGVH  146 (424)
Q Consensus        82 LlvlD~~~~-~--~~~~~~--~~~~~~~~~~iiittr~-------~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~~  146 (424)
                      ++|+|+++. .  ...+.+  .+.....++.+|+++..       ..+..   .....++..+++.++..+.+.+.+...
T Consensus        79 vvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~  158 (343)
T 1jr3_D           79 TLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQL  158 (343)
T ss_dssp             EEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence            889999876 3  233444  11222346666666543       12222   567889999999999998888877543


Q ss_pred             CCCCccHHHHHHHHHHhcCCchHHHHHH
Q 037045          147 LKKYPDIELVADSIVKECGGMPYMLKLI  174 (424)
Q Consensus       147 ~~~~~~~~~~~~~I~~~~~g~Plai~~~  174 (424)
                        .....++.+..+++.++|....+...
T Consensus       159 --g~~i~~~a~~~l~~~~~gdl~~~~~e  184 (343)
T 1jr3_D          159 --NLELDDAANQVLCYCYEGNLLALAQA  184 (343)
T ss_dssp             --TCEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred             --CCCCCHHHHHHHHHHhchHHHHHHHH
Confidence              22333567888999999988776543

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.84  E-value=0.0019  Score=66.05  Aligned_cols=140  Identities=17%  Similarity=0.241  Sum_probs=60.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL   83 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll   83 (424)
                      |.++|++|+|||.+|+.++....  ..     ++.+...    +    ++..    ....++......+...-+..+++|
T Consensus       514 vLl~GPPGtGKT~lAkaiA~e~~--~~-----f~~v~~~----~----l~s~----~vGese~~vr~lF~~Ar~~~P~Ii  574 (806)
T 3cf2_A          514 VLFYGPPGCGKTLLAKAIANECQ--AN-----FISIKGP----E----LLTM----WFGESEANVREIFDKARQAAPCVL  574 (806)
T ss_dssp             CEEESSTTSSHHHHHHHHHHTTT--CE-----EEECCHH----H----HHTT----TCSSCHHHHHHHHHHHHTTCSEEE
T ss_pred             EEEecCCCCCchHHHHHHHHHhC--Cc-----eEEeccc----h----hhcc----ccchHHHHHHHHHHHHHHcCCcee
Confidence            67999999999999999999872  22     2333221    1    1111    111122222222222223468999


Q ss_pred             EEcCCCCcc----------------hhhhh-----ccCCCCCCcEEEE-Eecchhhhc-------ccCceEEecCCCHHH
Q 037045           84 FLDGVSSEI----------------NFKEI-----GMHDDHGRGKVVF-ACRSREFCW-------QADGVIHVQQLCQRE  134 (424)
Q Consensus        84 vlD~~~~~~----------------~~~~~-----~~~~~~~~~~iii-ttr~~~~~~-------~~~~~~~l~~l~~~~  134 (424)
                      +||+++...                .+.++     ++  ......+|| ||.......       .-+..+++..-+.++
T Consensus       575 fiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~--~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~  652 (806)
T 3cf2_A          575 FFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS  652 (806)
T ss_dssp             ECSCGGGCC--------------CHHHHHHHHHHHSS--CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CH
T ss_pred             echhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCC--CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHH
Confidence            999988531                11222     11  112223444 443322211       456777887767777


Q ss_pred             HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCc
Q 037045          135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGM  167 (424)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~  167 (424)
                      -.++|+....+.... .+  .....|++.+.|+
T Consensus       653 R~~il~~~l~~~~~~-~~--~dl~~la~~t~g~  682 (806)
T 3cf2_A          653 RVAILKANLRKSPVA-KD--VDLEFLAKMTNGF  682 (806)
T ss_dssp             HHHTTTTTSSCC--C-CC---------------
T ss_pred             HHHHHHHHhcCCCCC-CC--CCHHHHHHhCCCC
Confidence            777776655433111 11  1234566666664

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.76  E-value=0.0047  Score=52.49  Aligned_cols=75  Identities=20%  Similarity=0.333  Sum_probs=45.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHH----------hcccccccChhHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILER----------LKVNAKELNNDLRADII   72 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~----------l~~~~~~~~~~~~~~~l   72 (424)
                      +|.|.|++|+||+|.|+.+++.+.       +.+++.+      +++++-...          .-....-.+.+.....+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g-------~~~istG------dllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv   68 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG-------FVHISTG------DILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI   68 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC-------CEEEEHH------HHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC-------CeEEcHH------HHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence            577899999999999999999872       3444432      233221111          10111233444556677


Q ss_pred             HHHhccCcEEEEEcCCCCc
Q 037045           73 SKELNDRSYVLFLDGVSSE   91 (424)
Q Consensus        73 ~~~l~~~~~LlvlD~~~~~   91 (424)
                      .+.+..... +|||++-..
T Consensus        69 ~~~l~~~~~-~ilDGfPRt   86 (206)
T 3sr0_A           69 EEVFPKHGN-VIFDGFPRT   86 (206)
T ss_dssp             HHHCCSSSC-EEEESCCCS
T ss_pred             HHhhccCCc-eEecCCchh
Confidence            777766554 688997543

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.76  E-value=0.00082  Score=56.39  Aligned_cols=26  Identities=31%  Similarity=0.456  Sum_probs=24.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      |.+|+|.|++|+||||+++.+++...
T Consensus         1 M~~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            1 MKIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999874

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.71  E-value=0.0079  Score=54.85  Aligned_cols=50  Identities=10%  Similarity=0.170  Sum_probs=37.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILER   55 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~   55 (424)
                      .++.|.|.+|+||||+|.+++.......  ..++|++.-  .+.+++...+...
T Consensus        69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~  118 (315)
T 3bh0_A           69 NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT  118 (315)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence            3789999999999999999997764322  568887755  4566666666554

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.67  E-value=0.0011  Score=54.96  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|.|.|++|+||||+|+.+.+..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            478999999999999999999987

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.65  E-value=0.0011  Score=58.39  Aligned_cols=25  Identities=28%  Similarity=0.392  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |++|+|.|++|+||||||+.++...
T Consensus         1 M~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            1 MLLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCcCHHHHHHHHHhcC
Confidence            5789999999999999999999876

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.61  E-value=0.0061  Score=57.84  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|.+.|++|+||||++.+++....
T Consensus       101 ~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A          101 TILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999998874

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.60  E-value=0.0061  Score=56.43  Aligned_cols=89  Identities=15%  Similarity=0.252  Sum_probs=51.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCC---CC-ceEEEEEeccCCCHHHHHHHHHHHhcccc----------cc---cC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESR---RF-DIIFWENINTDGNIRDIQEIILERLKVNA----------KE---LN   64 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~---~~   64 (424)
                      +++.|+|++|+|||||+..++.......   .. ..++|++.........+. .+++..+...          ..   ..
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~-~i~q~~~~~~~~v~~ni~~~~~~~~~~  210 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIR-EIAQNRGLDPDEVLKHIYVARAFNSNH  210 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHH-HHHHTTTCCHHHHGGGEEEEECCSHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHH-HHHHHcCCCHHHHhhCEEEEecCChHH
Confidence            4789999999999999999998762111   11 246898876554333332 2333332211          10   11


Q ss_pred             hhHHHHHHHHHhc------cCcEEEEEcCCCCc
Q 037045           65 NDLRADIISKELN------DRSYVLFLDGVSSE   91 (424)
Q Consensus        65 ~~~~~~~l~~~l~------~~~~LlvlD~~~~~   91 (424)
                      ..+....+...+.      .+.-+||+|.+...
T Consensus       211 ~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~  243 (349)
T 1pzn_A          211 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH  243 (349)
T ss_dssp             HHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred             HHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence            2223344444443      24568899987654

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.59  E-value=0.0014  Score=55.48  Aligned_cols=24  Identities=29%  Similarity=0.504  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|+|.|++|+||||+++.+++..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            589999999999999999999887

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.58  E-value=0.0012  Score=55.19  Aligned_cols=24  Identities=38%  Similarity=0.688  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.|+|.||+|+|||||++++.+..
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            578999999999999999999876

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.57  E-value=0.0014  Score=53.63  Aligned_cols=25  Identities=24%  Similarity=0.581  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.+|+|.|+.|+||||+++.+++..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999999976

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.55  E-value=0.0013  Score=54.41  Aligned_cols=25  Identities=32%  Similarity=0.545  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+.|.|.|++|+||||+|+.+++..
T Consensus         4 m~~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            4 AKNIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             -CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            3568999999999999999999887

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.54  E-value=0.0013  Score=55.81  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|+.|+||||+|+.++...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999999886

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.53  E-value=0.006  Score=55.23  Aligned_cols=38  Identities=24%  Similarity=0.194  Sum_probs=28.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      ++|+|.|++|+||||++..++.....  .-..+.+++...
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~  142 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADT  142 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECT
T ss_pred             eEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEcccc
Confidence            58999999999999999999988742  223466666543

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.52  E-value=0.0016  Score=54.22  Aligned_cols=24  Identities=29%  Similarity=0.481  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +.|.|.|++|+||||+|+.+++..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999999987

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.52  E-value=0.011  Score=53.27  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=28.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      ++++|.|++|+||||++..++.....+.. ..+..++...
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~  144 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDT  144 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCc
Confidence            48999999999999999999988742122 2456666544

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.51  E-value=0.0053  Score=63.32  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=27.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD   42 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~   42 (424)
                      .+.++|++|+|||++|+.+++..  .   ...+.++++..
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~  524 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEY  524 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhh
Confidence            58899999999999999999987  2   23455665554

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=96.51  E-value=0.008  Score=57.44  Aligned_cols=87  Identities=22%  Similarity=0.301  Sum_probs=57.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcc---------cc-----cccCh--
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKV---------NA-----KELNN--   65 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~---------~~-----~~~~~--   65 (424)
                      -++|.|.+|+|||+|+.++.+... +.+.+.++++-++.. ....++.+++...=..         ..     ...+.  
T Consensus       167 r~gIfgg~GvGKT~L~~~l~~~~a-~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~  245 (498)
T 1fx0_B          167 KIGLFGGAGVGKTVLIMELINNIA-KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGA  245 (498)
T ss_dssp             CEEEEECSSSSHHHHHHHHHHHTT-TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHH
T ss_pred             eEEeecCCCCCchHHHHHHHHHHH-hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHH
Confidence            478999999999999999999753 345577888888774 4566777777654211         11     11111  


Q ss_pred             ----hHHHHHHHHHhcc---CcEEEEEcCCCC
Q 037045           66 ----DLRADIISKELND---RSYVLFLDGVSS   90 (424)
Q Consensus        66 ----~~~~~~l~~~l~~---~~~LlvlD~~~~   90 (424)
                          ....-.+.+++++   +.+|+++||+..
T Consensus       246 R~~~~~~altiAEyfrd~~G~dVLl~~DsitR  277 (498)
T 1fx0_B          246 RMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR  277 (498)
T ss_dssp             HTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence                1122344555554   689999999754

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=96.49  E-value=0.01  Score=56.48  Aligned_cols=87  Identities=20%  Similarity=0.342  Sum_probs=56.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcc--------cc---cccCh--h--
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKV--------NA---KELNN--D--   66 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~--------~~---~~~~~--~--   66 (424)
                      -++|.|.+|+|||+|+.+++.... +.+.+.++++-++.. ....++.+++...=..        ..   ...++  .  
T Consensus       155 r~~Ifgg~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r  233 (482)
T 2ck3_D          155 KIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGAR  233 (482)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHH
T ss_pred             eeeeecCCCCChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHH
Confidence            478999999999999999998753 344567788877764 4566777777665222        11   11111  1  


Q ss_pred             ----HHHHHHHHHhc---cCcEEEEEcCCCC
Q 037045           67 ----LRADIISKELN---DRSYVLFLDGVSS   90 (424)
Q Consensus        67 ----~~~~~l~~~l~---~~~~LlvlD~~~~   90 (424)
                          ...-.+.++++   ++++|+++|++..
T Consensus       234 ~~~~~~a~tiAEyfrd~~G~dVLll~DsitR  264 (482)
T 2ck3_D          234 ARVALTGLTVAEYFRDQEGQDVLLFIDNIFR  264 (482)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence                11123334443   5799999999754

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.49  E-value=0.0059  Score=68.04  Aligned_cols=81  Identities=17%  Similarity=0.184  Sum_probs=55.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      +.|.|+|++|+|||+||.+++....  .+-..+.|+++....+...     ++.++...      ...+.++....+++.
T Consensus      1428 ~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~l 1500 (2050)
T 3cmu_A         1428 RIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 1500 (2050)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHH
Confidence            5789999999999999999998873  4445688888887766655     34444221      222334455555554


Q ss_pred             hcc-CcEEEEEcCCC
Q 037045           76 LND-RSYVLFLDGVS   89 (424)
Q Consensus        76 l~~-~~~LlvlD~~~   89 (424)
                      .+. +..+||+|.+.
T Consensus      1501 vr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A         1501 ARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp             HHHTCCSEEEESCGG
T ss_pred             HhcCCCCEEEEcChh
Confidence            443 56799999985

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.48  E-value=0.0016  Score=54.12  Aligned_cols=24  Identities=29%  Similarity=0.493  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++++|.|++|+|||||++.+....
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            479999999999999999999865

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.45  E-value=0.0018  Score=53.29  Aligned_cols=23  Identities=35%  Similarity=0.351  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|++|+||||+|+.+ +..
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~   24 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KER   24 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHC
Confidence            47999999999999999999 544

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.44  E-value=0.0082  Score=54.14  Aligned_cols=88  Identities=14%  Similarity=0.033  Sum_probs=49.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC-HHHHHHHHHHHhcccc----cccChhHHHHHHHHHh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN-IRDIQEIILERLKVNA----KELNNDLRADIISKEL   76 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~l   76 (424)
                      +++++.|.+|+||||++..++....  ..-..+.+++...... ..+.++......+...    ...+..+......+.+
T Consensus        99 ~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~  176 (297)
T 1j8m_F           99 YVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKF  176 (297)
T ss_dssp             EEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999998874  2233466777654332 2222333444444332    1122233333333334


Q ss_pred             ccCcE-EEEEcCCCCc
Q 037045           77 NDRSY-VLFLDGVSSE   91 (424)
Q Consensus        77 ~~~~~-LlvlD~~~~~   91 (424)
                      +..++ ++|+|-.-..
T Consensus       177 ~~~~~D~ViIDTpg~~  192 (297)
T 1j8m_F          177 LSEKMEIIIVDTAGRH  192 (297)
T ss_dssp             HHTTCSEEEEECCCSC
T ss_pred             HhCCCCEEEEeCCCCc
Confidence            32334 7888875433

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.44  E-value=0.0041  Score=65.00  Aligned_cols=38  Identities=21%  Similarity=0.346  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD   42 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~   42 (424)
                      .+.|+|++|+|||++|+.+++...  ..-...+.++++..
T Consensus       590 ~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~  627 (854)
T 1qvr_A          590 SFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEY  627 (854)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhc
Confidence            688999999999999999999873  22233556665554

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.43  E-value=0.0018  Score=53.26  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=23.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +++|.|.|+.|+||||+|+.+.+..
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            2 TEPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999976

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.42  E-value=0.008  Score=57.28  Aligned_cols=87  Identities=21%  Similarity=0.346  Sum_probs=50.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-CHHHHHHHHHHH--hcccc-----cccChhHH------
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-NIRDIQEIILER--LKVNA-----KELNNDLR------   68 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~--l~~~~-----~~~~~~~~------   68 (424)
                      .++|+|++|+|||||++.+...... ...+.++++.++... ...++.+++...  +....     ...+....      
T Consensus       153 ~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~  231 (473)
T 1sky_E          153 KIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALT  231 (473)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHH
Confidence            5789999999999999999887631 222455666666643 344555555432  11110     11111111      


Q ss_pred             HHHHHHHh---ccCcEEEEEcCCCC
Q 037045           69 ADIISKEL---NDRSYVLFLDGVSS   90 (424)
Q Consensus        69 ~~~l~~~l---~~~~~LlvlD~~~~   90 (424)
                      .-.+.+.+   +++++|+++|++..
T Consensus       232 ~ltiAEyFrd~~G~~VLl~~D~itR  256 (473)
T 1sky_E          232 GLTMAEYFRDEQGQDGLLFIDNIFR  256 (473)
T ss_dssp             HHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred             HHHHHHHHHHhcCCcEEEEeccHHH
Confidence            11223333   46899999999864

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.41  E-value=0.0019  Score=53.47  Aligned_cols=22  Identities=32%  Similarity=0.298  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHH   23 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~   23 (424)
                      .+|.|.|++|+||||+|+.+++
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3789999999999999999998

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.40  E-value=0.0085  Score=56.82  Aligned_cols=38  Identities=24%  Similarity=0.079  Sum_probs=28.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      ++|++.|++|+||||++..++.....  .-..+..++...
T Consensus        98 ~vI~lvG~~GsGKTTt~~kLA~~l~~--~G~kVllv~~D~  135 (433)
T 3kl4_A           98 FIIMLVGVQGSGKTTTAGKLAYFYKK--RGYKVGLVAADV  135 (433)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEecCc
Confidence            58999999999999999999988842  222355555443

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.40  E-value=0.0018  Score=54.87  Aligned_cols=23  Identities=35%  Similarity=0.657  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHH
Q 037045            1 MKKICIWGPLGVGKTTIMENLHH   23 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~   23 (424)
                      |.+|+|.|+.|+||||+++.++.
T Consensus         1 m~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            1 MKRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCcCHHHHHHHHHH
Confidence            56899999999999999999988

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.40  E-value=0.014  Score=55.52  Aligned_cols=40  Identities=20%  Similarity=0.203  Sum_probs=30.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD   42 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~   42 (424)
                      ++|++.|.+|+||||++.+++....... -..+.-+++...
T Consensus       101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~-G~kVllvd~D~~  140 (433)
T 2xxa_A          101 AVVLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLVVSADVY  140 (433)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTS-CCCEEEEECCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhc-CCeEEEEecCCC
Confidence            5899999999999999999998885321 234666666543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.39  E-value=0.0018  Score=53.26  Aligned_cols=24  Identities=38%  Similarity=0.742  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|++|+||||+++.++...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999999876

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.33  E-value=0.015  Score=55.04  Aligned_cols=38  Identities=21%  Similarity=0.096  Sum_probs=29.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      ++++|.|++|+||||++..++....  ..-..+..++...
T Consensus        99 ~vi~i~G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~D~  136 (425)
T 2ffh_A           99 NLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADT  136 (425)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeeccc
Confidence            4789999999999999999999884  3333456666543

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=96.33  E-value=0.011  Score=49.83  Aligned_cols=24  Identities=29%  Similarity=0.281  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .|+|-|+.|+||||.++.+++...
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~   25 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLE   25 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999999985

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.32  E-value=0.0024  Score=53.35  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|++|+||||+++.+++...
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3799999999999999999999773

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.26  E-value=0.0021  Score=53.77  Aligned_cols=24  Identities=33%  Similarity=0.396  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|++|+||||+++.++..+
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~~   33 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANLP   33 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcc
Confidence            478999999999999999998753

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.26  E-value=0.0025  Score=54.32  Aligned_cols=24  Identities=38%  Similarity=0.522  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|+|.|++|+|||||++.++...
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            479999999999999999999876

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.26  E-value=0.015  Score=55.71  Aligned_cols=51  Identities=8%  Similarity=-0.085  Sum_probs=36.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILER   55 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~   55 (424)
                      .++.|.|.+|+||||+|.+++...... .-..++|++..  .+.+++...++..
T Consensus       201 ~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~  251 (444)
T 2q6t_A          201 SLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCS  251 (444)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHH
Confidence            368899999999999999999887422 22357777654  4556666666543

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.25  E-value=0.0027  Score=53.77  Aligned_cols=25  Identities=28%  Similarity=0.299  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|++|+||||+++.++....
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999998873

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.24  E-value=0.0032  Score=51.47  Aligned_cols=26  Identities=31%  Similarity=0.239  Sum_probs=23.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      |++++|.|..|+|||||+.++.....
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence            57899999999999999999999874

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.24  E-value=0.0024  Score=52.94  Aligned_cols=24  Identities=38%  Similarity=0.472  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|.|.|++|+||||+++.+++..
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999876

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.23  E-value=0.0031  Score=58.28  Aligned_cols=89  Identities=17%  Similarity=0.265  Sum_probs=47.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCce-EEEEEeccC-CCHHHHHHHHHHHhcccccccChhHHH------HHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDI-IFWENINTD-GNIRDIQEIILERLKVNAKELNNDLRA------DIIS   73 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~------~~l~   73 (424)
                      ..++|+|++|+|||||++.++..... .+-+. ++++-++.. ....++.+.+-..+-......+.....      -.+.
T Consensus       175 Qr~~IvG~sG~GKTtLl~~Iar~i~~-~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~A  253 (422)
T 3ice_A          175 QRGLIVAPPKAGKTMLLQNIAQSIAY-NHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKA  253 (422)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHHHHHH-HCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEecCCCCChhHHHHHHHHHHhh-cCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            35899999999999999998876532 22232 456666653 233333333210000000111111111      1112


Q ss_pred             HHh--ccCcEEEEEcCCCCc
Q 037045           74 KEL--NDRSYVLFLDGVSSE   91 (424)
Q Consensus        74 ~~l--~~~~~LlvlD~~~~~   91 (424)
                      +.+  +++.+|+++|++...
T Consensus       254 Eyfrd~G~dVLil~DslTR~  273 (422)
T 3ice_A          254 KRLVEHKKDVIILLDSITRL  273 (422)
T ss_dssp             HHHHHTSCEEEEEEECHHHH
T ss_pred             HHHHhcCCCEEEEEeCchHH
Confidence            222  478999999998653

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.22  E-value=0.013  Score=53.70  Aligned_cols=51  Identities=18%  Similarity=0.083  Sum_probs=36.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERL   56 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l   56 (424)
                      .++.|.|.+|+||||+|..++.....  .-..++|++.  ..+.+++...++...
T Consensus        47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~   97 (338)
T 4a1f_A           47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL   97 (338)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence            36889999999999999999988743  2245777665  345666666665443

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.21  E-value=0.0029  Score=53.56  Aligned_cols=25  Identities=32%  Similarity=0.404  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +.+|+|.|+.|+||||+++.+++..
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3589999999999999999999876

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.21  E-value=0.0028  Score=53.74  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||++.++...
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            479999999999999999999865

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.21  E-value=0.003  Score=53.44  Aligned_cols=24  Identities=29%  Similarity=0.511  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|+.|+||||+++.++...
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh
Confidence            479999999999999999999876

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.20  E-value=0.0025  Score=54.16  Aligned_cols=24  Identities=29%  Similarity=0.628  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|+|.|++|+||||+++.+.+..
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            478999999999999999999876

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.20  E-value=0.016  Score=54.66  Aligned_cols=105  Identities=16%  Similarity=0.254  Sum_probs=76.5

Q ss_pred             CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeecccccccccCC-hhhhccCC
Q 037045          281 MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRSSCSLLLQLP-AEIGRLQK  358 (424)
Q Consensus       281 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~~~~~~~~lp-~~~~~l~~  358 (424)
                      +..|.+|+.+.+..+. ..+....+..+..|+.+.+.. .+..++ ..|.++.+|+.+.+  ..+ +..+. ..+..|.+
T Consensus       261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~l--p~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDI--PEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEC--CTT-CCEECTTTTTTCTT
T ss_pred             eeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEe--CCc-ccEehHhHhhCCCC
Confidence            3677888888887543 345556677788899988864 455554 45778889999988  543 45554 36788899


Q ss_pred             CCEEEecCCcCcccchh-hhcCCCCCEeeecccc
Q 037045          359 LEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVE  391 (424)
Q Consensus       359 L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~  391 (424)
                      |+.+.+..+ ++.++.. |.++++|+.+.+.++.
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            999998654 7777665 8899999999988763

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.17  E-value=0.02  Score=55.81  Aligned_cols=51  Identities=10%  Similarity=0.072  Sum_probs=36.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILER   55 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~   55 (424)
                      .++.|.|.+|+||||+|.+++...... +-..++|++...  +.+++...++..
T Consensus       243 ~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~  293 (503)
T 1q57_A          243 EVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGL  293 (503)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred             eEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHH
Confidence            368899999999999999999887422 123578877643  456666665443

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.15  E-value=0.01  Score=65.31  Aligned_cols=82  Identities=17%  Similarity=0.198  Sum_probs=62.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      ++|-|+|+.|+||||||.++....  +..-..++|++.....++..     ++.++...      .+..-++....+...
T Consensus      1432 ~~iei~g~~~sGkttl~~~~~a~~--~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~ 1504 (1706)
T 3cmw_A         1432 RIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 1504 (1706)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH--HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHHH
Confidence            689999999999999999999877  45556789999888777664     66666554      344446677777777


Q ss_pred             hccCc-EEEEEcCCCC
Q 037045           76 LNDRS-YVLFLDGVSS   90 (424)
Q Consensus        76 l~~~~-~LlvlD~~~~   90 (424)
                      ++... -++|+|-+--
T Consensus      1505 ~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A         1505 ARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp             HHHTCCSEEEESCSTT
T ss_pred             HHcCCCCEEEEccHHh
Confidence            77654 4999998744

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.15  E-value=0.003  Score=52.91  Aligned_cols=24  Identities=29%  Similarity=0.382  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|.|.|++|+||||+++.+++..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999876

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.14  E-value=0.0034  Score=52.79  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|+|.|++|+|||||++.+....
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECcCCCCHHHHHHHHHhhC
Confidence            578999999999999999999876

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.13  E-value=0.012  Score=65.68  Aligned_cols=83  Identities=17%  Similarity=0.173  Sum_probs=57.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      +++.|+|++|+||||||.+++....  ..-..++|++.....+...     ++.++...      ...+.++....++..
T Consensus       384 ~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~l  456 (2050)
T 3cmu_A          384 RIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL  456 (2050)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHHH
Confidence            4789999999999999999998874  2334689998877666432     45555432      334555555555544


Q ss_pred             hcc-CcEEEEEcCCCCc
Q 037045           76 LND-RSYVLFLDGVSSE   91 (424)
Q Consensus        76 l~~-~~~LlvlD~~~~~   91 (424)
                      .+. ..-++|+|.+...
T Consensus       457 v~~~~~~lIVIDSL~al  473 (2050)
T 3cmu_A          457 ARSGAVDVIVVDSVAAL  473 (2050)
T ss_dssp             HHHTCCSEEEESCGGGC
T ss_pred             HHhcCCcEEEECCHHHh
Confidence            433 4559999998654

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.11  E-value=0.009  Score=50.74  Aligned_cols=25  Identities=28%  Similarity=0.202  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|++|+||||+|+.+++...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            4789999999999999999999874

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.11  E-value=0.0035  Score=51.63  Aligned_cols=24  Identities=21%  Similarity=0.463  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|+.|+||||+++.++...
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhh
Confidence            479999999999999999998865

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=96.10  E-value=0.0075  Score=57.05  Aligned_cols=87  Identities=8%  Similarity=0.077  Sum_probs=54.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccC-CCCc-eEEEEEeccC-CCHHHHHHHHHHH--hcccc-----cccChhHH-----
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGES-RRFD-IIFWENINTD-GNIRDIQEIILER--LKVNA-----KELNNDLR-----   68 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~-~~f~-~~~wv~~~~~-~~~~~~~~~i~~~--l~~~~-----~~~~~~~~-----   68 (424)
                      ++|.|.+|+|||+|+.++++..... ++-+ .++++-++.. ....++.+++...  +....     ...+....     
T Consensus       154 ~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~  233 (465)
T 3vr4_D          154 LPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPR  233 (465)
T ss_dssp             CCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHH
T ss_pred             EEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHH
Confidence            5799999999999999999987431 1222 5778877764 4566777776553  22211     11111111     


Q ss_pred             -HHHHHHHhc---cCcEEEEEcCCCC
Q 037045           69 -ADIISKELN---DRSYVLFLDGVSS   90 (424)
Q Consensus        69 -~~~l~~~l~---~~~~LlvlD~~~~   90 (424)
                       .-.+.++++   ++++|+++||+..
T Consensus       234 ~a~tiAEyfrd~~G~~VLl~~DslTr  259 (465)
T 3vr4_D          234 MALTAAEYLAYEKGMHVLVIMTDMTN  259 (465)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred             HHHHHHHHHHHhcCCeEEEEEcChHH
Confidence             123444554   5799999999754

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.08  E-value=0.0037  Score=52.83  Aligned_cols=24  Identities=42%  Similarity=0.840  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +|+|.|+.|+||||+++.+++...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999999873

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.07  E-value=0.0034  Score=53.32  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHH   23 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~   23 (424)
                      .+|+|.|+.|+||||+++.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999976

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.07  E-value=0.0031  Score=52.45  Aligned_cols=24  Identities=33%  Similarity=0.450  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|++|+||||+|+.+++..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            468999999999999999999976

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.07  E-value=0.022  Score=51.32  Aligned_cols=85  Identities=13%  Similarity=0.083  Sum_probs=46.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHH-HHHHHHHHHhccccc----ccChhHHHHHHHHHh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIR-DIQEIILERLKVNAK----ELNNDLRADIISKEL   76 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~l   76 (424)
                      ++++|.|.+|+||||++..++....  ..-..+.+++........ ..+.......+....    ..+..+......+.+
T Consensus        99 ~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~  176 (295)
T 1ls1_A           99 NLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (295)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999998874  222346666654432211 122233444443331    122223322222222


Q ss_pred             -ccCcEEEEEcCC
Q 037045           77 -NDRSYVLFLDGV   88 (424)
Q Consensus        77 -~~~~~LlvlD~~   88 (424)
                       ....=++|+|-.
T Consensus       177 ~~~~~D~viiDtp  189 (295)
T 1ls1_A          177 RLEARDLILVDTA  189 (295)
T ss_dssp             HHHTCCEEEEECC
T ss_pred             HhCCCCEEEEeCC
Confidence             234447888976

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.06  E-value=0.0029  Score=52.53  Aligned_cols=24  Identities=46%  Similarity=0.715  Sum_probs=18.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|.|.|+.|+||||+|+.+++..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            579999999999999999999876

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.05  E-value=0.0039  Score=52.21  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|+.|+||||+|+.+++..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999999876

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.05  E-value=0.0039  Score=55.21  Aligned_cols=25  Identities=36%  Similarity=0.486  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +.+|.|.|++|+||||+|+.+++..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999999875

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.05  E-value=0.0038  Score=52.40  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|+.|+||||+|+.+++..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999999877

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.05  E-value=0.013  Score=64.57  Aligned_cols=83  Identities=17%  Similarity=0.173  Sum_probs=57.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      +++.|+|++|+||||||.+++....  ..-..++|++.....+...     ++.++...      ...+.++....++..
T Consensus       384 ~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l  456 (1706)
T 3cmw_A          384 RIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL  456 (1706)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Confidence            4789999999999999999998874  2334689998877766532     45555432      333445555555544


Q ss_pred             hcc-CcEEEEEcCCCCc
Q 037045           76 LND-RSYVLFLDGVSSE   91 (424)
Q Consensus        76 l~~-~~~LlvlD~~~~~   91 (424)
                      .+. ..-++|+|.+...
T Consensus       457 v~~~~~~lVVIDSL~al  473 (1706)
T 3cmw_A          457 ARSGAVDVIVVDSVAAL  473 (1706)
T ss_dssp             HHHTCCSEEEESCSTTC
T ss_pred             HHhcCCCEEEECCHHHh
Confidence            433 4559999998764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.04  E-value=0.0037  Score=52.59  Aligned_cols=24  Identities=42%  Similarity=0.409  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|++|+||||+|+.+++..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999999987

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.04  E-value=0.0033  Score=53.52  Aligned_cols=25  Identities=24%  Similarity=0.462  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|++|+|||||++.++....
T Consensus        23 ~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           23 QLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4799999999999999999998774

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.02  E-value=0.0038  Score=52.16  Aligned_cols=22  Identities=45%  Similarity=0.591  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHH   23 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~   23 (424)
                      .+++|.|+.|+||||+++.++.
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999999986

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.02  E-value=0.004  Score=52.07  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|+.|+||||+|+.+++..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999999876

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.02  E-value=0.0038  Score=52.89  Aligned_cols=24  Identities=33%  Similarity=0.508  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|++|+||||+++.+....
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            479999999999999999998866

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.00  E-value=0.0035  Score=52.99  Aligned_cols=24  Identities=29%  Similarity=0.667  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++++|.|++|+|||||++.+....
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            478999999999999999998865

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.00  E-value=0.011  Score=46.16  Aligned_cols=53  Identities=21%  Similarity=0.332  Sum_probs=27.7

Q ss_pred             EEEccCCCCC--cCChhhhcccccceeeecccccccccCChh-hhccCCCCEEEecCCcC
Q 037045          313 LLDLHETNIG--CLPPSISRLINLNALFLRSSCSLLLQLPAE-IGRLQKLEILDVSHTKV  369 (424)
Q Consensus       313 ~L~l~~~~~~--~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i  369 (424)
                      .++.+++.+.  .+|..+  ..+|+.|++  ++|.+..+|.. +..+++|+.|++.+|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~L--s~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVL--TGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEEC--TTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEEC--CCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555554  555322  234555666  55555555542 34455566666655554

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.99  E-value=0.0044  Score=51.57  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|+|.|+.|+||||+++.+++..
T Consensus         6 ~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            6 AVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999999876

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.99  E-value=0.0043  Score=51.67  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      ..|+|+|+.|+||||+++.+++.
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46999999999999999999987

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.96  E-value=0.0044  Score=53.40  Aligned_cols=24  Identities=33%  Similarity=0.544  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|++|+||||+++.+....
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999999876

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.95  E-value=0.0047  Score=54.09  Aligned_cols=24  Identities=29%  Similarity=0.571  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|+.|+||||+++.+++..
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999999876

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.93  E-value=0.0049  Score=52.72  Aligned_cols=24  Identities=38%  Similarity=0.452  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +||.|.|++|+||+|.|+.+++.+
T Consensus        30 kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           30 KVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            689999999999999999999987

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.93  E-value=0.018  Score=49.49  Aligned_cols=44  Identities=16%  Similarity=0.246  Sum_probs=31.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccC---C-CCceEEEEEeccCCCH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGES---R-RFDIIFWENINTDGNI   45 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~   45 (424)
                      .+++|.|++|+|||||++.++......   . ....++|++.......
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~   73 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP   73 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence            478999999999999999998754211   1 2345888876544333

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=95.92  E-value=0.072  Score=61.58  Aligned_cols=133  Identities=17%  Similarity=0.222  Sum_probs=73.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -+.++|++|+|||++|+.+....   ..+ ..+.+.++...+...+.+.+-..+.........-     ..-.-.+++++
T Consensus      1269 ~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~-----~~P~~~gk~~V 1339 (2695)
T 4akg_A         1269 GIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT-----LLPKSDIKNLV 1339 (2695)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE-----EEEBSSSSCEE
T ss_pred             eEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc-----ccCCCCCceEE
Confidence            47899999999999998887654   122 3556777777777776666655543221000000     00000357899


Q ss_pred             EEEcCCCCcc-----------hhhhh----ccCCCCC-------CcEEEEEecchh------hhc---ccCceEEecCCC
Q 037045           83 LFLDGVSSEI-----------NFKEI----GMHDDHG-------RGKVVFACRSRE------FCW---QADGVIHVQQLC  131 (424)
Q Consensus        83 lvlD~~~~~~-----------~~~~~----~~~~~~~-------~~~iiittr~~~------~~~---~~~~~~~l~~l~  131 (424)
                      +.+||+.-..           .+.++    ++.....       +..+|-++....      +.+   .....+.++..+
T Consensus      1340 lFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~ 1419 (2695)
T 4akg_A         1340 LFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPS 1419 (2695)
T ss_dssp             EEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCT
T ss_pred             EEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCC
Confidence            9999964321           11111    1111111       223444443331      111   455778888888


Q ss_pred             HHHHHHHHHHHhc
Q 037045          132 QREAKKLFWEVVG  144 (424)
Q Consensus       132 ~~~~~~l~~~~~~  144 (424)
                      .++-.++|.....
T Consensus      1420 ~~~l~~I~~~il~ 1432 (2695)
T 4akg_A         1420 GKSLSQIYEIYYK 1432 (2695)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888776653

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.92  E-value=0.003  Score=51.92  Aligned_cols=38  Identities=18%  Similarity=0.157  Sum_probs=27.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN   38 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~   38 (424)
                      +++++|+|++|+|||||++.+.........-.+.+.++
T Consensus         2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d   39 (171)
T 2f1r_A            2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH   39 (171)
T ss_dssp             -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence            47899999999999999999998875332223444443

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.91  E-value=0.0046  Score=51.22  Aligned_cols=24  Identities=46%  Similarity=0.722  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .++|.|+.|+|||||++.++....
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999998763

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.91  E-value=0.0046  Score=53.44  Aligned_cols=24  Identities=25%  Similarity=0.410  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|++|+||||+|+.+++..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            479999999999999999999876

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.91  E-value=0.021  Score=53.34  Aligned_cols=123  Identities=10%  Similarity=0.102  Sum_probs=81.4

Q ss_pred             cceeEEEeeccCCCC-CCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeec
Q 037045          263 AHTKRLSLFGFPSST-LPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLR  340 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~  340 (424)
                      .+++.+.+..+-... ...+..|.+|+.+.+..+ ++.+....+..+..|+.+.+..+ +..++ ..|..+.+|+.+.+ 
T Consensus       217 ~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l-  293 (379)
T 4h09_A          217 KNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM-  293 (379)
T ss_dssp             SSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE-
T ss_pred             cccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc-
Confidence            455555554432211 123366778888888755 66666666777788888887654 44444 34677888888888 


Q ss_pred             ccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccc
Q 037045          341 SSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRV  390 (424)
Q Consensus       341 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n  390 (424)
                       ..+.+..++. .+..|.+|+.+.+..+ ++.++.. |.++++|+.+.+..+
T Consensus       294 -~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          294 -DNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             -CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             -cccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence             6666776654 5778888888888643 6666554 778888888877543

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.90  E-value=0.0049  Score=51.56  Aligned_cols=23  Identities=35%  Similarity=0.320  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|+|.|+.|+||||+++.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999976

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.90  E-value=0.0057  Score=50.38  Aligned_cols=26  Identities=23%  Similarity=0.328  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +++++|.|++|+|||||++.+.....
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            47899999999999999999998763

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.89  E-value=0.0051  Score=51.98  Aligned_cols=23  Identities=30%  Similarity=0.566  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|+|.|++|+||||+|+.+++..
T Consensus        22 ~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           22 RVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999999877

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.88  E-value=0.0043  Score=52.84  Aligned_cols=24  Identities=33%  Similarity=0.376  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|+.|+|||||++.++...
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~~   30 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALARTL   30 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999999876

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.87  E-value=0.0055  Score=50.00  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|+|.|+.|+||||+|+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999999976

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.86  E-value=0.028  Score=51.36  Aligned_cols=54  Identities=20%  Similarity=0.094  Sum_probs=34.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLK   57 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~   57 (424)
                      .+++|.|+.|+||||+++.++.....  .-..+.++..... ....+-++...+.++
T Consensus       130 ~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~g  184 (328)
T 3e70_C          130 YVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIG  184 (328)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcC
Confidence            48999999999999999999988742  2223555543332 233334444455555

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.83  E-value=0.0043  Score=51.00  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=18.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLH   22 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~   22 (424)
                      .+++|.|++|+|||||++.++
T Consensus        10 ei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            478999999999999999643

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.82  E-value=0.0051  Score=52.33  Aligned_cols=25  Identities=28%  Similarity=0.133  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|+.|+||||+++.+.+...
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3799999999999999999999763

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.81  E-value=0.0058  Score=50.88  Aligned_cols=25  Identities=32%  Similarity=0.359  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|.|.|++|+||||+++.++....
T Consensus        14 ~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           14 IVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999874

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.79  E-value=0.033  Score=52.38  Aligned_cols=84  Identities=11%  Similarity=0.139  Sum_probs=56.0

Q ss_pred             hHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeecccccccccCC-hhhhccCCCCEEEecCCcCcccchh-hhc
Q 037045          302 TSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRSSCSLLLQLP-AEIGRLQKLEILDVSHTKVQCLPSE-IGQ  378 (424)
Q Consensus       302 ~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~  378 (424)
                      ...+..+.+|+.+.+..+ +..++ ..|..+.+|+.+++  ..+ +..++ ..+..|.+|+.+.+..+ ++.++.. |..
T Consensus       290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~l--p~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~  364 (394)
T 4fs7_A          290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDL--PYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG  364 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECC--CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred             cccccccccccccccccc-cceechhhhcCCCCCCEEEe--CCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence            333556677777777654 44443 44677788888887  433 55554 35777888888888665 6666554 778


Q ss_pred             CCCCCEeeeccc
Q 037045          379 LIELKYLRVSRV  390 (424)
Q Consensus       379 l~~L~~l~l~~n  390 (424)
                      +++|+.+.+..+
T Consensus       365 C~~L~~i~lp~~  376 (394)
T 4fs7_A          365 CINLKKVELPKR  376 (394)
T ss_dssp             CTTCCEEEEEGG
T ss_pred             CCCCCEEEECCC
Confidence            888888888764

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.79  E-value=0.0057  Score=52.28  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|+|.|++|+||||+|+.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999876

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.78  E-value=0.0053  Score=52.18  Aligned_cols=24  Identities=33%  Similarity=0.632  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||++.+..-.
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            478999999999999999998876

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.76  E-value=0.0062  Score=51.11  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|+|+|+.|+||||+++.+.+..
T Consensus        14 iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           14 VIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            79999999999999999999874

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.74  E-value=0.006  Score=52.37  Aligned_cols=25  Identities=20%  Similarity=0.386  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+++|.|++|+|||||++.++....
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCC
Confidence            4789999999999999999998763

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.74  E-value=0.0051  Score=52.91  Aligned_cols=24  Identities=29%  Similarity=0.274  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ..|.|.|++|+||||+++.+++..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999987

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.74  E-value=0.0048  Score=52.97  Aligned_cols=24  Identities=38%  Similarity=0.670  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|++|+|||||++.++...
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            478999999999999999998865

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.73  E-value=0.0053  Score=52.12  Aligned_cols=24  Identities=38%  Similarity=0.425  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|++|+||||+++.+....
T Consensus        22 ~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            579999999999999999998864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.72  E-value=0.0059  Score=52.04  Aligned_cols=25  Identities=24%  Similarity=0.214  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|+.|+||||+++.+++...
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3799999999999999999999873

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.72  E-value=0.022  Score=54.81  Aligned_cols=49  Identities=14%  Similarity=0.175  Sum_probs=34.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIIL   53 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~   53 (424)
                      .++.|.|.+|+|||||+.+++...... .-..++|++...  +...+...+.
T Consensus       204 ~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~  252 (454)
T 2r6a_A          204 DLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML  252 (454)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence            378999999999999999999887421 123577776543  4456665554

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=95.69  E-value=0.006  Score=53.39  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|+.|+|||||++.++...
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998865

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.69  E-value=0.0064  Score=52.01  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|+|.|++|+||||+|+.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998876

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.69  E-value=0.0063  Score=51.42  Aligned_cols=24  Identities=38%  Similarity=0.256  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|+.|+||||+++.+.+..
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH
Confidence            479999999999999999999876

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.68  E-value=0.0069  Score=53.26  Aligned_cols=24  Identities=17%  Similarity=0.253  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|+.|+||||+|+.+.+..
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999999875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.68  E-value=0.0073  Score=51.81  Aligned_cols=24  Identities=33%  Similarity=0.570  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ..|+|.|+.|+||||+|+.+++..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999987

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.66  E-value=0.0067  Score=49.09  Aligned_cols=24  Identities=33%  Similarity=0.545  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|.|||||++.++.-.
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            378999999999999999999876

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.65  E-value=0.0066  Score=51.22  Aligned_cols=23  Identities=35%  Similarity=0.388  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      .+|+|.|+.|+||||+++.+.+.
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC
Confidence            57999999999999999999884

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.65  E-value=0.0071  Score=53.22  Aligned_cols=24  Identities=38%  Similarity=0.563  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|+.|+||||+++.+++..
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhc
Confidence            479999999999999999999876

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=95.64  E-value=0.01  Score=53.93  Aligned_cols=38  Identities=21%  Similarity=0.286  Sum_probs=30.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      |||+|+|-|||||||.+..++....  ..-..+.-+++..
T Consensus        49 KVIAIaGKGGVGKTTtavNLA~aLA--~~GkkVllID~Dp   86 (314)
T 3fwy_A           49 KVFAVYGKGGIGKSTTSSNLSAAFS--ILGKRVLQIGCDP   86 (314)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEESS
T ss_pred             eEEEEECCCccCHHHHHHHHHHHHH--HCCCeEEEEecCC
Confidence            7999999999999999999998884  2223477777664

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.64  E-value=0.0032  Score=53.70  Aligned_cols=25  Identities=36%  Similarity=0.436  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|+.|+||||+++.+.....
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3799999999999999999998873

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.62  E-value=0.0064  Score=54.62  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|.|.|++|+||||+|+.+.+..
T Consensus        34 ~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999999876

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.60  E-value=0.0018  Score=60.03  Aligned_cols=111  Identities=8%  Similarity=0.070  Sum_probs=59.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      .+++|.|+.|+||||+.+.++....... -..++.+.-........    -...+...............+...|...+=
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~~~~~-~~~i~t~ed~~e~~~~~----~~~~v~q~~~~~~~~~~~~~La~aL~~~Pd  198 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYLNNTK-YHHILTIEDPIEFVHES----KKCLVNQREVHRDTLGFSEALRSALREDPD  198 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHHC-CCEEEEEESSCCSCCCC----SSSEEEEEEBTTTBSCHHHHHHHHTTSCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccCCC-CcEEEEccCcHHhhhhc----cccceeeeeeccccCCHHHHHHHHhhhCcC
Confidence            3789999999999999999987663211 12222222111100000    000000000111112334567778888888


Q ss_pred             EEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhhh
Q 037045           82 VLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFC  118 (424)
Q Consensus        82 LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~~  118 (424)
                      ++++|+..+.+.++.+ ......|..+++|+......
T Consensus       199 villDEp~d~e~~~~~-~~~~~~G~~vl~t~H~~~~~  234 (356)
T 3jvv_A          199 IILVGEMRDLETIRLA-LTAAETGHLVFGTLHTTSAA  234 (356)
T ss_dssp             EEEESCCCSHHHHHHH-HHHHHTTCEEEEEESCSSHH
T ss_pred             EEecCCCCCHHHHHHH-HHHHhcCCEEEEEEccChHH
Confidence            9999999876554443 11123356688888765543

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=95.60  E-value=0.014  Score=51.76  Aligned_cols=39  Identities=26%  Similarity=0.428  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      |++|+|.|-||+||||+|..++....  ..-..++-|+...
T Consensus         1 M~vI~vs~KGGvGKTT~a~nLA~~la--~~G~~VlliD~D~   39 (269)
T 1cp2_A            1 MRQVAIYGKGGIGKSTTTQNLTSGLH--AMGKTIMVVGCDP   39 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEEECT
T ss_pred             CcEEEEecCCCCcHHHHHHHHHHHHH--HCCCcEEEEcCCC
Confidence            68899999999999999999999884  2223567777654

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.59  E-value=0.0068  Score=51.26  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|++|+||||+++.+....
T Consensus        23 ~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            479999999999999999999876

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.57  E-value=0.053  Score=50.59  Aligned_cols=104  Identities=10%  Similarity=0.128  Sum_probs=78.1

Q ss_pred             cCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeecccccccccCCh-hhhccCCC
Q 037045          282 PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRSSCSLLLQLPA-EIGRLQKL  359 (424)
Q Consensus       282 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~~~~~~~~lp~-~~~~l~~L  359 (424)
                      ..+.+|+.+.+..+ ++.+....+..+..|+.+.+..+ +..+. ..+....+|+.+.+  ..+ +..++. .+..|.+|
T Consensus       214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l--~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF--YAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE--CCC-CSEECTTTTTTCTTC
T ss_pred             ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc--ccc-ceecccccccccccc
Confidence            56777888877644 55555665777889999988765 44443 45677888999988  443 455554 57889999


Q ss_pred             CEEEecCCcCcccchh-hhcCCCCCEeeeccc
Q 037045          360 EILDVSHTKVQCLPSE-IGQLIELKYLRVSRV  390 (424)
Q Consensus       360 ~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n  390 (424)
                      +.+.+.++.++.++.. |.++.+|+.+.+..+
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            9999998888888766 889999999998654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.55  E-value=0.031  Score=53.02  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|.|.|++|+||||+|+.+++..
T Consensus       259 ~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhc
Confidence            578999999999999999999866

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.54  E-value=0.0079  Score=54.03  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|++|+||||||+.+.....
T Consensus        32 ~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           32 LFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4799999999999999999988774

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.52  E-value=0.0083  Score=52.44  Aligned_cols=24  Identities=33%  Similarity=0.340  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|++|+||||+|+.+++..
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999999876

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=95.52  E-value=0.017  Score=55.01  Aligned_cols=86  Identities=7%  Similarity=0.033  Sum_probs=54.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCC--CceEEEEEeccC-CCHHHHHHHHHHHhccc--c-----cccChhH------
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRR--FDIIFWENINTD-GNIRDIQEIILERLKVN--A-----KELNNDL------   67 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~--~-----~~~~~~~------   67 (424)
                      ++|.|.+|+|||+|+.+++++....+.  -+.++++-++.. ....++.+++...=...  .     ...+...      
T Consensus       155 ~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~  234 (469)
T 2c61_A          155 LPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPR  234 (469)
T ss_dssp             CCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHH
Confidence            578999999999999999998853221  246778877764 45667777776542111  1     1111111      


Q ss_pred             HHHHHHHHhc---cCcEEEEEcCCC
Q 037045           68 RADIISKELN---DRSYVLFLDGVS   89 (424)
Q Consensus        68 ~~~~l~~~l~---~~~~LlvlD~~~   89 (424)
                      ..-.+.+.++   ++.+|+++|++.
T Consensus       235 ~a~tiAEyfrdd~G~dVLl~~Dslt  259 (469)
T 2c61_A          235 MALTAAEYLAYEHGMHVLVILTDIT  259 (469)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred             HHHHHHHHHHHhcCCeEEEEEeCHH
Confidence            1123344444   589999999964

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.51  E-value=0.026  Score=43.88  Aligned_cols=54  Identities=20%  Similarity=0.233  Sum_probs=31.1

Q ss_pred             EEEeeccCCC--CCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC
Q 037045          267 RLSLFGFPSS--TLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI  321 (424)
Q Consensus       267 ~L~l~~~~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  321 (424)
                      .++.+++.++  .+|.. --.+|+.|+|++|.++.++...+..+++|+.|++++|-+
T Consensus        12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555666655  44421 112466666666666666666566666666666666643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.51  E-value=0.0086  Score=50.70  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|+|.|+.|+||||+++.++...
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            89999999999999999999876

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.50  E-value=0.04  Score=50.03  Aligned_cols=39  Identities=21%  Similarity=0.131  Sum_probs=27.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      +|+|.|+.|+||||+++.+.........-..+..+....
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~  132 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG  132 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence            899999999999999999988773111112355555444

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.47  E-value=0.0077  Score=54.75  Aligned_cols=40  Identities=18%  Similarity=0.138  Sum_probs=28.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      .+|+|.|+.|+|||||++.++.-......-..+.++.-..
T Consensus        91 ~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~  130 (312)
T 3aez_A           91 FIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG  130 (312)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred             EEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence            4799999999999999999998774321112355655433

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=95.47  E-value=0.0095  Score=49.21  Aligned_cols=25  Identities=28%  Similarity=0.324  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|+.|+||||+++.+.....
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~l~   30 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEYLV   30 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3789999999999999999998763

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.46  E-value=0.0086  Score=54.71  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|+|.|+.|+||||||..+++..
T Consensus         9 lI~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCcCcHHHHHHHHHHHc
Confidence            79999999999999999999987

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.46  E-value=0.039  Score=52.74  Aligned_cols=49  Identities=10%  Similarity=0.166  Sum_probs=34.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILE   54 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~   54 (424)
                      .++.|.|.+|+||||+|.+++......  -..++|++.-.  +.+++...+..
T Consensus       198 ~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~  246 (444)
T 3bgw_A          198 NFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIV  246 (444)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHH
Confidence            368899999999999999999887433  23577776543  33444444443

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.44  E-value=0.013  Score=53.08  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+++|.|++|+||||+++.++....
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lagll~  127 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGRYYQ  127 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4899999999999999999998874

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.44  E-value=0.0094  Score=50.79  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|+.|+||||+++.+.....
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4789999999999999999998763

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.43  E-value=0.0054  Score=53.12  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=15.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHH-Hhh
Q 037045            2 KKICIWGPLGVGKTTIMENLH-HSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~-~~~   25 (424)
                      .+++|.|+.|+|||||++.++ ...
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC---
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            479999999999999999999 654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.43  E-value=0.011  Score=51.44  Aligned_cols=38  Identities=13%  Similarity=0.111  Sum_probs=28.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      .++.|.|++|+|||||+.+++....  ..-..++|++...
T Consensus        24 ~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~   61 (247)
T 2dr3_A           24 NVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE   61 (247)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence            4789999999999999998887663  2234578877544

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.40  E-value=0.01  Score=51.34  Aligned_cols=23  Identities=26%  Similarity=0.615  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|+|.|++|+||||+++.+++..
T Consensus        11 ~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A           11 VVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            79999999999999999999877

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.39  E-value=0.0098  Score=50.92  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ..|+|.|++|+||||+|+.+++..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999987

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.39  E-value=0.014  Score=49.21  Aligned_cols=45  Identities=24%  Similarity=0.223  Sum_probs=33.8

Q ss_pred             CcEEEEE-cCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHH
Q 037045            1 MKKICIW-GPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRD   47 (424)
Q Consensus         1 ~~vi~I~-G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~   47 (424)
                      |++|+|+ +-||+||||+|..++....  ..-..++-++.....+...
T Consensus         1 M~vi~v~s~kgG~GKTt~a~~la~~la--~~g~~vlliD~D~~~~~~~   46 (206)
T 4dzz_A            1 MKVISFLNPKGGSGKTTAVINIATALS--RSGYNIAVVDTDPQMSLTN   46 (206)
T ss_dssp             CEEEEECCSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCTTCHHHH
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHHHHH--HCCCeEEEEECCCCCCHHH
Confidence            6899998 6688999999999999884  2334577788776544443

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.37  E-value=0.011  Score=51.30  Aligned_cols=24  Identities=29%  Similarity=0.494  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ..|.|.|+.|+||||+|+.+++..
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999987

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.37  E-value=0.01  Score=51.09  Aligned_cols=23  Identities=35%  Similarity=0.488  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|+|.|+.|+||||+++.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999877

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.35  E-value=0.0095  Score=49.82  Aligned_cols=25  Identities=32%  Similarity=0.638  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+++|.|+.|+|||||++.++....
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            3689999999999999999998763

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.33  E-value=0.01  Score=53.48  Aligned_cols=24  Identities=38%  Similarity=0.495  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|+|.|+.|+||||||..+++..
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhC
Confidence            478999999999999999999876

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=95.33  E-value=0.017  Score=54.65  Aligned_cols=87  Identities=10%  Similarity=0.132  Sum_probs=53.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccC--------CCCc-eEEEEEeccC-CCHHHHHHHHHHH--hcccc-----cccChh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGES--------RRFD-IIFWENINTD-GNIRDIQEIILER--LKVNA-----KELNND   66 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~--------~~f~-~~~wv~~~~~-~~~~~~~~~i~~~--l~~~~-----~~~~~~   66 (424)
                      ++|.|.+|+|||+|+.++++.....        ++-+ .++++-++.. ....++.+++...  +....     ...+..
T Consensus       150 ~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~  229 (464)
T 3gqb_B          150 LPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTI  229 (464)
T ss_dssp             CCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTH
T ss_pred             EEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHH
Confidence            5799999999999999999887532        1233 5778777764 4566677765442  21111     111111


Q ss_pred             HH------HHHHHHHhc---cCcEEEEEcCCCC
Q 037045           67 LR------ADIISKELN---DRSYVLFLDGVSS   90 (424)
Q Consensus        67 ~~------~~~l~~~l~---~~~~LlvlD~~~~   90 (424)
                      ..      .-.+.++++   ++.+|+++||+..
T Consensus       230 ~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr  262 (464)
T 3gqb_B          230 ERILTPRMALTVAEYLAFEHDYHVLVILTDMTN  262 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence            11      123444554   5799999999754

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.30  E-value=0.01  Score=53.81  Aligned_cols=24  Identities=29%  Similarity=0.516  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|+|.|+.|+||||||..+++..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            379999999999999999999976

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.29  E-value=0.01  Score=50.73  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHH   23 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~   23 (424)
                      .+|+|.|+.|+||||+++.+..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999976

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.29  E-value=0.023  Score=49.04  Aligned_cols=25  Identities=36%  Similarity=0.542  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|.|+.|+||||+++.+++...
T Consensus        27 ~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            3789999999999999999999984

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.29  E-value=0.048  Score=51.26  Aligned_cols=122  Identities=19%  Similarity=0.235  Sum_probs=83.4

Q ss_pred             cceeEEEeeccCCCC-CCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeec
Q 037045          263 AHTKRLSLFGFPSST-LPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLR  340 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~  340 (424)
                      ..|+.+.+..+.... -..+..|.+|+.+.+. +.++.++...|..+.+|+.+++..+ +..+. ..|.++.+|+.+.+ 
T Consensus       265 ~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i-  341 (394)
T 4gt6_A          265 AYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI-  341 (394)
T ss_dssp             SSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE-
T ss_pred             ccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE-
Confidence            567777776544332 1234788999999996 5678888888999999999999865 55554 56888999999999 


Q ss_pred             ccccccccCCh-hhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeecccc
Q 037045          341 SSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVE  391 (424)
Q Consensus       341 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~  391 (424)
                       ..+ +..++. .+.+|.+|+.+.+.++... . ..+.....|+.+.+..+.
T Consensus       342 -p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          342 -PSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             -CTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC---------
T ss_pred             -Ccc-cCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCCC
Confidence             544 556654 6889999999999887532 1 235667788888777653

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=95.25  E-value=0.025  Score=51.26  Aligned_cols=40  Identities=20%  Similarity=0.167  Sum_probs=27.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      .+|+|.|+.|+|||||++.+.........-..+.+++...
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~  120 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG  120 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence            4899999999999999999998762101112255555444

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.22  E-value=0.011  Score=50.44  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|+|.|++|+||||+|+.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999977

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=95.19  E-value=0.018  Score=51.69  Aligned_cols=40  Identities=25%  Similarity=0.411  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD   42 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~   42 (424)
                      |++|+|.|-||+||||+|..++.....  .-..+.-|++...
T Consensus         2 MkvIavs~KGGvGKTT~a~nLA~~La~--~G~rVlliD~D~q   41 (289)
T 2afh_E            2 MRQCAIYGKGGIGKSTTTQNLVAALAE--MGKKVMIVGCDPK   41 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEECSS
T ss_pred             ceEEEEeCCCcCcHHHHHHHHHHHHHH--CCCeEEEEecCCC
Confidence            678999999999999999999988842  2234667776543

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.18  E-value=0.011  Score=52.97  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHH   23 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~   23 (424)
                      .+|+|.|+.|+||||+|+.+..
T Consensus        76 ~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999984

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.17  E-value=0.01  Score=51.56  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        32 e~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           32 EFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            478999999999999999988655

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.16  E-value=0.013  Score=47.08  Aligned_cols=25  Identities=32%  Similarity=0.516  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+.|+|.|.+|+|||||+..+....
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            1 MHKVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            5679999999999999999998754

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.16  E-value=0.029  Score=50.51  Aligned_cols=50  Identities=14%  Similarity=0.184  Sum_probs=33.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILE   54 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~   54 (424)
                      .+++|.|++|+|||||++.++....... -..++|+....  +...+.+.+..
T Consensus        36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~~   85 (296)
T 1cr0_A           36 EVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIG   85 (296)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHHH
Confidence            3789999999999999999998774221 11466766432  34444444443

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.12  E-value=0.011  Score=53.87  Aligned_cols=24  Identities=25%  Similarity=0.461  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|+|.|+.|+|||||+..+++..
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHC
Confidence            379999999999999999999876

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.12  E-value=0.013  Score=52.63  Aligned_cols=24  Identities=33%  Similarity=0.551  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|+|.|+.|+||||||..+++..
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCccCHHHHHHHHHHhC
Confidence            478999999999999999999876

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.11  E-value=0.012  Score=51.65  Aligned_cols=24  Identities=29%  Similarity=0.528  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|+.|+||||+++.++...
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhc
Confidence            468999999999999999999977

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.10  E-value=0.012  Score=51.15  Aligned_cols=24  Identities=25%  Similarity=0.509  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.09  E-value=0.0089  Score=52.60  Aligned_cols=24  Identities=33%  Similarity=0.360  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|.|.|++|+||||+|+.+....
T Consensus        33 ~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           33 IAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            478999999999999999999876

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.08  E-value=0.011  Score=51.05  Aligned_cols=24  Identities=29%  Similarity=0.313  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999988654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.07  E-value=0.01  Score=50.38  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      .+++|.|+.|+|||||++.++--
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37899999999999999999875

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.06  E-value=0.0073  Score=54.30  Aligned_cols=24  Identities=21%  Similarity=0.400  Sum_probs=19.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|++|+||||+|+.+.+..
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            479999999999999999999865

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.01  E-value=0.016  Score=52.34  Aligned_cols=25  Identities=40%  Similarity=0.454  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+++|.|+.|+||||+++.++....
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag~l~  125 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAHRLK  125 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4899999999999999999998874

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.01  E-value=0.012  Score=49.46  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -+.|+|++|+||||+|..+++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999887

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.98  E-value=0.015  Score=49.98  Aligned_cols=24  Identities=29%  Similarity=0.523  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|.+|+|||||+..++...
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            578999999999999999999886

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=94.98  E-value=0.037  Score=46.83  Aligned_cols=25  Identities=36%  Similarity=0.542  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +.|+|-|+.|+||||+++.+++...
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4689999999999999999999983

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.97  E-value=0.023  Score=50.67  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .++.|.|++|+|||||+..++....
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            4789999999999999999997653

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=94.96  E-value=0.04  Score=46.89  Aligned_cols=25  Identities=36%  Similarity=0.371  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|++-|+.|+||||+++.+++...
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3789999999999999999999885

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.95  E-value=0.013  Score=48.84  Aligned_cols=24  Identities=29%  Similarity=0.268  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +.|.|.|++|+||||||..++++.
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999999876

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=94.94  E-value=0.013  Score=50.98  Aligned_cols=24  Identities=21%  Similarity=0.538  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||++.++.-.
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999998765

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=94.93  E-value=0.013  Score=51.78  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        33 e~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           33 DVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999998654

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=94.93  E-value=0.048  Score=46.46  Aligned_cols=31  Identities=29%  Similarity=0.471  Sum_probs=25.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCce
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDI   33 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~   33 (424)
                      .+|+|.|+.|+||||+++.+++.... ..+..
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v   37 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAERLRE-RGIEV   37 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHT-TTCCE
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCc
Confidence            37899999999999999999998852 33443

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=94.90  E-value=0.02  Score=52.23  Aligned_cols=38  Identities=21%  Similarity=0.206  Sum_probs=29.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      ++|+|.|++|+||||++..++.....  .-..+.+++...
T Consensus       106 ~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~  143 (320)
T 1zu4_A          106 NIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADT  143 (320)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence            58999999999999999999988742  223466666544

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=94.89  E-value=0.039  Score=47.78  Aligned_cols=35  Identities=29%  Similarity=0.334  Sum_probs=26.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWE   37 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv   37 (424)
                      .+|+|.|+.|+||||+++.+++.... ..+..+...
T Consensus        28 ~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~   62 (236)
T 3lv8_A           28 KFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRT   62 (236)
T ss_dssp             CEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeee
Confidence            37899999999999999999998853 344433333

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=94.89  E-value=0.12  Score=49.99  Aligned_cols=38  Identities=24%  Similarity=0.091  Sum_probs=28.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      ++|+|+|.+|+||||++.+++...... . ..+.-|+...
T Consensus       102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~-G-~kVllVd~D~  139 (504)
T 2j37_W          102 NVIMFVGLQGSGKTTTCSKLAYYYQRK-G-WKTCLICADT  139 (504)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHT-T-CCEEEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhC-C-CeEEEEeccc
Confidence            489999999999999999999887422 2 2345555433

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=94.88  E-value=0.014  Score=51.99  Aligned_cols=24  Identities=33%  Similarity=0.573  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||++.++--.
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            478999999999999999998654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.88  E-value=0.015  Score=52.42  Aligned_cols=24  Identities=29%  Similarity=0.236  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|.|.|++|+||||+|+.+.+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~   26 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKN   26 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhC
Confidence            378999999999999999999853

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=94.87  E-value=0.012  Score=50.17  Aligned_cols=24  Identities=29%  Similarity=0.650  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998755

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.84  E-value=0.017  Score=49.35  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +++|+|.|.+|+|||||+..++...
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999999886

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=94.84  E-value=0.078  Score=50.89  Aligned_cols=25  Identities=36%  Similarity=0.402  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+++|.|++|+|||||++.++....
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAgll~  318 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLARQFE  318 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHHHHhh
Confidence            4899999999999999999998774

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=94.83  E-value=0.016  Score=50.85  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      .+++|.|+.|+|||||.+.++--
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999884

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=94.83  E-value=0.014  Score=51.40  Aligned_cols=24  Identities=29%  Similarity=0.481  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        34 e~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=94.81  E-value=0.015  Score=50.27  Aligned_cols=24  Identities=21%  Similarity=0.458  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999998765

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.81  E-value=0.015  Score=50.74  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=94.80  E-value=0.015  Score=51.40  Aligned_cols=24  Identities=29%  Similarity=0.505  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        51 ei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           51 EVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEcCCCCcHHHHHHHHHcCC
Confidence            478999999999999999998654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=94.80  E-value=0.015  Score=51.53  Aligned_cols=24  Identities=33%  Similarity=0.605  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||++.++--.
T Consensus        38 e~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            478999999999999999998754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.77  E-value=0.041  Score=47.31  Aligned_cols=25  Identities=32%  Similarity=0.308  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|-|+.|+||||+++.+++...
T Consensus        26 ~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           26 KFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CEEEEECCC---CHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999999884

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=94.76  E-value=0.017  Score=51.16  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      .+++|.|+.|+|||||++.++--
T Consensus        47 e~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           47 EVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37899999999999999999885

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=94.74  E-value=0.038  Score=47.18  Aligned_cols=38  Identities=24%  Similarity=0.257  Sum_probs=27.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD   42 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~   42 (424)
                      .|.+.|.||+||||+|..++..... ..++ +..+++...
T Consensus         8 ~I~~~~kgGvGKTt~a~~la~~l~~-~G~~-V~v~d~D~q   45 (228)
T 2r8r_A            8 KVFLGAAPGVGKTYAMLQAAHAQLR-QGVR-VMAGVVETH   45 (228)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHH-TTCC-EEEEECCCT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHH-CCCC-EEEEEeCCC
Confidence            3788999999999999999988742 2333 445555543

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=94.73  E-value=0.016  Score=50.78  Aligned_cols=24  Identities=29%  Similarity=0.382  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||++.++--.
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999998765

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=94.71  E-value=0.016  Score=50.57  Aligned_cols=24  Identities=38%  Similarity=0.465  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999998654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.70  E-value=0.016  Score=50.91  Aligned_cols=24  Identities=33%  Similarity=0.498  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999998654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=94.65  E-value=0.019  Score=47.92  Aligned_cols=23  Identities=26%  Similarity=0.573  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|+|.|..|+|||||++.++...
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=94.65  E-value=0.02  Score=50.55  Aligned_cols=109  Identities=13%  Similarity=0.103  Sum_probs=54.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhccc-ccccChhHHHHHHHHHhccCc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVN-AKELNNDLRADIISKELNDRS   80 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~l~~~l~~~~   80 (424)
                      .+++|.|+.|+||||+++.++....  ..+.+.+++.-......   .+.- ..+-.+ .-..+.......+...+...+
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~---~~~~-~~~v~q~~~gl~~~~l~~~la~aL~~~p   99 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYV---FKHK-KSIVNQREVGEDTKSFADALRAALREDP   99 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSC---CCCS-SSEEEEEEBTTTBSCHHHHHHHHHHHCC
T ss_pred             CEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceee---cCCc-ceeeeHHHhCCCHHHHHHHHHHHHhhCC
Confidence            4789999999999999999988663  11123232221110000   0000 000000 000011223445556666666


Q ss_pred             EEEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhh
Q 037045           81 YVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREF  117 (424)
Q Consensus        81 ~LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~  117 (424)
                      =++++|+..+....... +.....|.-|++||.....
T Consensus       100 ~illlDEp~D~~~~~~~-l~~~~~g~~vl~t~H~~~~  135 (261)
T 2eyu_A          100 DVIFVGEMRDLETVETA-LRAAETGHLVFGTLHTNTA  135 (261)
T ss_dssp             SEEEESCCCSHHHHHHH-HHHHHTTCEEEEEECCSSH
T ss_pred             CEEEeCCCCCHHHHHHH-HHHHccCCEEEEEeCcchH
Confidence            68888988754433322 1111235567777766543

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=94.64  E-value=0.071  Score=49.29  Aligned_cols=38  Identities=29%  Similarity=0.328  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCce-EEEEEecc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDI-IFWENINT   41 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~   41 (424)
                      -++|.|.+|+|||+|+.++++.... .+-+. ++++-++.
T Consensus       177 R~lIfg~~g~GKT~Ll~~Ia~~i~~-~~~dv~~V~~lIGE  215 (427)
T 3l0o_A          177 RGMIVAPPKAGKTTILKEIANGIAE-NHPDTIRIILLIDE  215 (427)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHHH-HCTTSEEEEEECSC
T ss_pred             eEEEecCCCCChhHHHHHHHHHHhh-cCCCeEEEEEEecc
Confidence            4789999999999999999887531 12232 45565554

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=94.62  E-value=0.018  Score=50.46  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            378999999999999999998765

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=94.62  E-value=0.023  Score=52.54  Aligned_cols=25  Identities=40%  Similarity=0.454  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+++|.|+.|+||||+++.++....
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag~l~  182 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAHRLK  182 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHhhcc
Confidence            4899999999999999999998874

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=94.61  E-value=0.017  Score=50.92  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||++.++--.
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhccC
Confidence            478999999999999999998754

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=94.61  E-value=0.017  Score=51.27  Aligned_cols=24  Identities=33%  Similarity=0.490  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||++.++--.
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999998755

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.61  E-value=0.019  Score=53.40  Aligned_cols=23  Identities=39%  Similarity=0.645  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -+.++|++|+|||++|+.+++..
T Consensus        53 ~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           53 NILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc
Confidence            47899999999999999999987

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.58  E-value=0.02  Score=53.50  Aligned_cols=24  Identities=38%  Similarity=0.522  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|+|.|+.|+||||||..+++..
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHC
Confidence            579999999999999999999887

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=94.57  E-value=0.063  Score=51.88  Aligned_cols=46  Identities=22%  Similarity=0.333  Sum_probs=35.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEII   52 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i   52 (424)
                      -++|.|.+|+|||+|+.++++..    +-+.++++-++.. ....++.+++
T Consensus       229 r~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~  275 (588)
T 3mfy_A          229 TAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF  275 (588)
T ss_dssp             EEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred             eEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence            47899999999999999998764    2357888888875 4566666665

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=94.53  E-value=0.019  Score=51.24  Aligned_cols=24  Identities=33%  Similarity=0.473  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        48 e~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            378999999999999999998765

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=94.52  E-value=0.019  Score=50.91  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        34 e~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           34 ECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            378999999999999999988654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=94.52  E-value=0.019  Score=50.45  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998765

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=94.51  E-value=0.096  Score=50.02  Aligned_cols=84  Identities=14%  Similarity=0.202  Sum_probs=49.9

Q ss_pred             EEEEEcCCCCcHHHHH-HHHHHhhccCCCCc-eEEEEEeccC-CCHHHHHHHHHHH--hcccc---c--ccChhHH----
Q 037045            3 KICIWGPLGVGKTTIM-ENLHHSIGESRRFD-IIFWENINTD-GNIRDIQEIILER--LKVNA---K--ELNNDLR----   68 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~--l~~~~---~--~~~~~~~----   68 (424)
                      -++|.|..|+|||+|+ ..+.+..    ..+ .++++-++.. ....++.+++...  +....   .  ..+....    
T Consensus       164 R~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~  239 (513)
T 3oaa_A          164 RELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAP  239 (513)
T ss_dssp             BCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHH
T ss_pred             EEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHH
Confidence            3689999999999996 5565542    234 4678888875 4566777776543  11111   1  1111111    


Q ss_pred             --HHHHHHHh--ccCcEEEEEcCCCC
Q 037045           69 --ADIISKEL--NDRSYVLFLDGVSS   90 (424)
Q Consensus        69 --~~~l~~~l--~~~~~LlvlD~~~~   90 (424)
                        ...+-+++  +++.+|+++||+..
T Consensus       240 ~~a~tiAEyfrd~G~dVLli~Dsltr  265 (513)
T 3oaa_A          240 YAGCAMGEYFRDRGEDALIIYDDLSK  265 (513)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEecChHH
Confidence              11223333  46899999999754

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.49  E-value=0.021  Score=51.50  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|+|+.|+|||||++.+..-.
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhhhc
Confidence            478999999999999999998765

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=94.47  E-value=0.093  Score=45.34  Aligned_cols=23  Identities=30%  Similarity=0.409  Sum_probs=18.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      +.+.|.|+.|+||||++....-+
T Consensus        77 ~~~~i~g~TGsGKTt~~~~~~~~   99 (235)
T 3llm_A           77 SVVIIRGATGCGKTTQVPQFILD   99 (235)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCcHHhHHHHHhc
Confidence            46899999999999877655433

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.45  E-value=0.022  Score=49.55  Aligned_cols=24  Identities=29%  Similarity=0.558  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|+.|+||||+++.+++..
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999987

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=94.43  E-value=0.054  Score=51.91  Aligned_cols=84  Identities=15%  Similarity=0.230  Sum_probs=50.7

Q ss_pred             EEEEEcCCCCcHHHHH-HHHHHhhccCCCCce-EEEEEeccC-CCHHHHHHHHHHHhcc--cc---cccCh--hHH----
Q 037045            3 KICIWGPLGVGKTTIM-ENLHHSIGESRRFDI-IFWENINTD-GNIRDIQEIILERLKV--NA---KELNN--DLR----   68 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~--~~---~~~~~--~~~----   68 (424)
                      -++|.|.+|+|||+|| .++++..    ..+. ++++-++.. ....++.+.+...=..  ..   ...++  ...    
T Consensus       177 R~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~  252 (515)
T 2r9v_A          177 RELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAP  252 (515)
T ss_dssp             BEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHH
T ss_pred             EEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHH
Confidence            4689999999999996 4666654    3553 577778774 4566777777553211  11   11111  111    


Q ss_pred             --HHHHHHHh--ccCcEEEEEcCCCC
Q 037045           69 --ADIISKEL--NDRSYVLFLDGVSS   90 (424)
Q Consensus        69 --~~~l~~~l--~~~~~LlvlD~~~~   90 (424)
                        ...+-+++  +++.+|+++||+..
T Consensus       253 ~~a~tiAEyfrd~G~dVLli~DslTr  278 (515)
T 2r9v_A          253 YAGCAMGEYFAYSGRDALVVYDDLSK  278 (515)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred             HHHHHHHHHHHHcCCcEEEEeccHHH
Confidence              11233344  36899999999754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=94.39  E-value=0.02  Score=47.35  Aligned_cols=22  Identities=41%  Similarity=0.668  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 037045            3 KICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      .|+|.|.+|+|||||++.++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999874

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=94.38  E-value=0.025  Score=45.82  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 037045            3 KICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      .|+|.|.+|+|||||.+.+...
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999864

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=94.37  E-value=0.026  Score=47.39  Aligned_cols=23  Identities=26%  Similarity=0.573  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|+|.|..|+|||||.+.++...
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58899999999999999998763

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=94.34  E-value=0.023  Score=53.09  Aligned_cols=23  Identities=35%  Similarity=0.641  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+.++|++|+|||++|+.+++..
T Consensus        74 ~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           74 NILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999977

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=94.28  E-value=0.017  Score=49.91  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      .+|+|.|+.|+||||+++.++..
T Consensus        21 ~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            47999999999999999999875

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=94.26  E-value=0.026  Score=52.59  Aligned_cols=24  Identities=29%  Similarity=0.374  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++++|+|++|+|||||++.++...
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            478999999999999999999765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.26  E-value=0.19  Score=47.15  Aligned_cols=120  Identities=12%  Similarity=0.109  Sum_probs=75.9

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeec
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLR  340 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~  340 (424)
                      ..++.+.+.... ..++  .+..|..++.+.+..+.. .+....+..+..++.+......+.  ...+..+.+|+.+.+ 
T Consensus       230 ~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l-  304 (394)
T 4fs7_A          230 TGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKL-  304 (394)
T ss_dssp             CCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEE-
T ss_pred             CCCceEEECCCc-eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeec--ccccccccccccccc-
Confidence            455666654432 2222  235667777777765533 333334566677777766554321  134667788888888 


Q ss_pred             ccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccc
Q 037045          341 SSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRV  390 (424)
Q Consensus       341 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n  390 (424)
                       ..+ +..++. .+..|.+|+.+++..+ ++.++.. |.++++|+.+.+..+
T Consensus       305 -~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          305 -LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             -CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             -ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence             443 555544 5778899999998643 7777655 889999999988765

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=94.26  E-value=0.029  Score=48.62  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|+.|+||||+++.++...
T Consensus        17 ~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           17 IQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            479999999999999999999876

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=94.24  E-value=0.072  Score=48.76  Aligned_cols=45  Identities=24%  Similarity=0.272  Sum_probs=33.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDI   48 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~   48 (424)
                      +++.+.|-||+||||+|..++....  ..-..++-++.....++.+.
T Consensus        17 ~i~~~sgkGGvGKTt~a~~lA~~la--~~g~~vllid~D~~~~l~~~   61 (334)
T 3iqw_A           17 RWIFVGGKGGVGKTTTSCSLAIQLA--KVRRSVLLLSTDPAHNLSDA   61 (334)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHT--TSSSCEEEEECCSSCHHHHH
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHH--hCCCcEEEEECCCCCChhHH
Confidence            5788889999999999999999884  33345777777655444433

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=94.22  E-value=0.067  Score=46.96  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .++.+.|.+|+||||++..++....
T Consensus        15 ~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           15 MIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            4788899999999999999998874

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.22  E-value=0.024  Score=50.01  Aligned_cols=23  Identities=39%  Similarity=0.668  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      .+++|.|+.|+|||||.+.++--
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            37899999999999999998864

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=94.19  E-value=0.094  Score=50.92  Aligned_cols=46  Identities=17%  Similarity=0.395  Sum_probs=35.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEII   52 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i   52 (424)
                      -++|.|.+|+|||+|+.++++..    +-+.++++-++.. ....++.+++
T Consensus       234 r~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~  280 (600)
T 3vr4_A          234 AAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEF  280 (600)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred             EEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence            47899999999999999998875    2357888888875 4555666554

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=94.13  E-value=0.059  Score=46.89  Aligned_cols=43  Identities=30%  Similarity=0.458  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHH
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIR   46 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~   46 (424)
                      |+ |+|.|-||+||||+|..++....  ..-..++-|+.....+..
T Consensus         1 mk-I~vs~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~l~   43 (254)
T 3kjh_A            1 MK-LAVAGKGGVGKTTVAAGLIKIMA--SDYDKIYAVDGDPDSCLG   43 (254)
T ss_dssp             CE-EEEECSSSHHHHHHHHHHHHHHT--TTCSCEEEEEECTTSCHH
T ss_pred             CE-EEEecCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCcChH
Confidence            44 56699999999999999999985  333457777776654443

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.08  E-value=0.017  Score=50.98  Aligned_cols=24  Identities=38%  Similarity=0.506  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|+.|+||||+++.+++..
T Consensus        25 ~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           25 KKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            579999999999999999999876

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=94.07  E-value=0.089  Score=50.35  Aligned_cols=84  Identities=15%  Similarity=0.218  Sum_probs=50.5

Q ss_pred             EEEEEcCCCCcHHHHH-HHHHHhhccCCCCce-EEEEEeccC-CCHHHHHHHHHHHhcccc-------cccChhHH----
Q 037045            3 KICIWGPLGVGKTTIM-ENLHHSIGESRRFDI-IFWENINTD-GNIRDIQEIILERLKVNA-------KELNNDLR----   68 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~----   68 (424)
                      -++|.|.+|+|||+|| ..+++..    ..+. ++++-++.. ....++.+.+...=....       ...+....    
T Consensus       164 R~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~  239 (502)
T 2qe7_A          164 RELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAP  239 (502)
T ss_dssp             BCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHH
Confidence            3689999999999995 5666655    2453 577777774 456667776655321111       11111111    


Q ss_pred             --HHHHHHHh--ccCcEEEEEcCCCC
Q 037045           69 --ADIISKEL--NDRSYVLFLDGVSS   90 (424)
Q Consensus        69 --~~~l~~~l--~~~~~LlvlD~~~~   90 (424)
                        ...+-+++  +++.+|+++||+..
T Consensus       240 ~~a~tiAEyfrd~G~dVLl~~Dsltr  265 (502)
T 2qe7_A          240 YAGCAMGEYFMYKGKHALVVYDDLSK  265 (502)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred             HHHHHHHHHHHHcCCcEEEEEecHHH
Confidence              12333344  36899999999754

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=94.05  E-value=0.019  Score=52.31  Aligned_cols=25  Identities=28%  Similarity=0.448  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +++++|.|+.|+|||||.+.+....
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4689999999999999999999754

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.05  E-value=0.027  Score=51.96  Aligned_cols=24  Identities=33%  Similarity=0.418  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|++|+|||||.+.++--.
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            378999999999999999998754

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.04  E-value=0.024  Score=51.20  Aligned_cols=24  Identities=33%  Similarity=0.596  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|+|+.|+|||||++.++.-.
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CEEEEECCCCchHHHHHHHHHcCC
Confidence            478999999999999999988655

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=93.97  E-value=0.035  Score=46.08  Aligned_cols=25  Identities=32%  Similarity=0.306  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +++.|+|+.|+||||++.+++.+..
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~~   28 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIYK   28 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999988877663

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=93.95  E-value=0.074  Score=48.98  Aligned_cols=46  Identities=24%  Similarity=0.278  Sum_probs=33.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRD   47 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~   47 (424)
                      +++.+.|-||+||||+|..++........-..+.-++.....++..
T Consensus        19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~~   64 (348)
T 3io3_A           19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSD   64 (348)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHHH
T ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChHH
Confidence            6889999999999999999998883103334577777765544333

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=93.95  E-value=0.034  Score=48.37  Aligned_cols=48  Identities=17%  Similarity=0.206  Sum_probs=31.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEII   52 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i   52 (424)
                      .++.|.|.+|+|||++|.+++.... ...-..++|++...  +.+.+.+.+
T Consensus        31 ~l~~i~G~pG~GKT~l~l~~~~~~~-~~~~~~v~~~s~E~--~~~~~~~~~   78 (251)
T 2zts_A           31 TTVLLTGGTGTGKTTFAAQFIYKGA-EEYGEPGVFVTLEE--RARDLRREM   78 (251)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSS--CHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHH-HhcCCCceeecccC--CHHHHHHHH
Confidence            3788999999999999999876531 12223466666543  444544443

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=93.94  E-value=0.033  Score=46.04  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 037045            3 KICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      .|+|.|.+|+|||||++.++..
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999874

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=93.91  E-value=0.029  Score=44.95  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|++.|.+|+|||||+..+....
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47899999999999999998764

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=93.90  E-value=0.026  Score=51.64  Aligned_cols=125  Identities=14%  Similarity=0.064  Sum_probs=66.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhcc---C
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELND---R   79 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~   79 (424)
                      -+.++|++|+|||+||+.+++..  ...   ...+.+.......++.       +...........      .+..   .
T Consensus        48 ~vll~G~pGtGKT~la~~la~~~--~~~---~~~i~~~~~~~~~~l~-------g~~~~~~~~~~~------~~~~g~l~  109 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKTM--DLD---FHRIQFTPDLLPSDLI-------GTMIYNQHKGNF------EVKKGPVF  109 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHHT--TCC---EEEEECCTTCCHHHHH-------EEEEEETTTTEE------EEEECTTC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh--CCC---eEEEecCCCCChhhcC-------CceeecCCCCce------EeccCccc
Confidence            37899999999999999999977  232   2334444333333322       111100000000      0111   1


Q ss_pred             cEEEEEcCCCCcch--hhhh-------ccC------CCCCCcEEEEEecchh------hhc---cc-CceEEecCCCHHH
Q 037045           80 SYVLFLDGVSSEIN--FKEI-------GMH------DDHGRGKVVFACRSRE------FCW---QA-DGVIHVQQLCQRE  134 (424)
Q Consensus        80 ~~LlvlD~~~~~~~--~~~~-------~~~------~~~~~~~iiittr~~~------~~~---~~-~~~~~l~~l~~~~  134 (424)
                      ..++++|+++....  ...+       .+.      .......++.|+....      +..   .. ...+.++..+.++
T Consensus       110 ~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~  189 (331)
T 2r44_A          110 SNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKES  189 (331)
T ss_dssp             SSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHH
T ss_pred             ccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHH
Confidence            36899999987531  1111       000      1122344555555222      111   22 3358899999999


Q ss_pred             HHHHHHHHhcc
Q 037045          135 AKKLFWEVVGV  145 (424)
Q Consensus       135 ~~~l~~~~~~~  145 (424)
                      -.+++.+....
T Consensus       190 ~~~il~~~~~~  200 (331)
T 2r44_A          190 ELEVMRRVSNM  200 (331)
T ss_dssp             HHHHHHHHHCT
T ss_pred             HHHHHHhcccc
Confidence            99999887754

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=93.90  E-value=0.32  Score=57.01  Aligned_cols=77  Identities=14%  Similarity=0.166  Sum_probs=48.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccc--cChhHHHHHHHHHh-ccC
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKE--LNNDLRADIISKEL-NDR   79 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~l~~~l-~~~   79 (424)
                      -|.++|++|+|||++++.+.....   .+ ..+.++++...+...++..+-..+......  ...-       .-. .++
T Consensus      1306 pvLL~GptGtGKT~li~~~L~~l~---~~-~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~-------~p~~~Gk 1374 (3245)
T 3vkg_A         1306 PLILCGPPGSGKTMTLTSTLRAFP---DF-EVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVL-------RPTQLGK 1374 (3245)
T ss_dssp             CCEEESSTTSSHHHHHHHHGGGCT---TE-EEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEE-------EESSTTC
T ss_pred             cEEEECCCCCCHHHHHHHHHHhCC---CC-ceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCccc-------CCCcCCc
Confidence            367999999999999988776552   22 356788888888877777775444221100  0000       000 267


Q ss_pred             cEEEEEcCCCC
Q 037045           80 SYVLFLDGVSS   90 (424)
Q Consensus        80 ~~LlvlD~~~~   90 (424)
                      ++++.+||+.-
T Consensus      1375 ~~VlFiDDiNm 1385 (3245)
T 3vkg_A         1375 WLVVFCDEINL 1385 (3245)
T ss_dssp             EEEEEETTTTC
T ss_pred             eEEEEecccCC
Confidence            88999999853

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=93.89  E-value=0.033  Score=51.39  Aligned_cols=24  Identities=33%  Similarity=0.494  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            378999999999999999998654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=93.89  E-value=0.028  Score=50.43  Aligned_cols=24  Identities=21%  Similarity=0.458  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        65 e~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           65 QLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            478999999999999999998765

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.88  E-value=0.035  Score=44.75  Aligned_cols=23  Identities=26%  Similarity=0.507  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|+|.|.+|+|||||+..+....
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998754

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=93.85  E-value=0.031  Score=49.60  Aligned_cols=23  Identities=35%  Similarity=0.602  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .++|.|+.|+|||||.+.++...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999765

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=93.78  E-value=0.036  Score=51.58  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|++|+|||||.+.++--.
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCC
Confidence            378999999999999999998755

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=93.77  E-value=0.036  Score=51.29  Aligned_cols=24  Identities=25%  Similarity=0.501  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            378999999999999999998654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=93.77  E-value=0.036  Score=51.19  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHhcCC
Confidence            478999999999999999988654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=93.75  E-value=0.04  Score=44.25  Aligned_cols=22  Identities=36%  Similarity=0.356  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|.+|+|||||+..+....
T Consensus         3 i~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            7899999999999999998654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=93.74  E-value=0.036  Score=51.21  Aligned_cols=24  Identities=33%  Similarity=0.468  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHHCCC
Confidence            378999999999999999998654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=93.73  E-value=0.036  Score=46.07  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|+|.|.+|+|||||+..+....
T Consensus        50 ~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998764

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=93.73  E-value=0.097  Score=44.33  Aligned_cols=43  Identities=19%  Similarity=0.050  Sum_probs=31.8

Q ss_pred             EEEEE-cCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHH
Q 037045            3 KICIW-GPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDI   48 (424)
Q Consensus         3 vi~I~-G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~   48 (424)
                      +|+|. +-||+||||+|..++.....  .- .+.-++.....+....
T Consensus         2 vI~v~s~KGGvGKTT~a~~LA~~la~--~g-~VlliD~D~q~~~~~~   45 (209)
T 3cwq_A            2 IITVASFKGGVGKTTTAVHLSAYLAL--QG-ETLLIDGDPNRSATGW   45 (209)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHT--TS-CEEEEEECTTCHHHHH
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHh--cC-CEEEEECCCCCCHHHH
Confidence            56665 78899999999999998852  23 7888887776554433

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=93.72  E-value=0.037  Score=47.21  Aligned_cols=23  Identities=30%  Similarity=0.565  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|+|.|+.|+||||+++.+.+..
T Consensus         5 ~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            5 NIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            78999999999999999998876

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=93.72  E-value=0.037  Score=44.96  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|+|.|.+|+|||||++.+....
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            48899999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	424
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	2e-20
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 88.3 bits (218), Expect = 2e-20
 Identities = 35/240 (14%), Positives = 67/240 (27%), Gaps = 28/240 (11%)

Query: 4   ICIWGPLGVGKTTIMENL--HHSIGESRRFDIIFWENINTDGNIRDIQEIILERL----- 56
           + + G  G GK+ I               +D I W   +               L     
Sbjct: 47  LFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSE 106

Query: 57  ------KVNAKELNNDLRADIISKELNDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVF 110
                        +  L+  I +  ++  + +   D V  E   +         R + + 
Sbjct: 107 DDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWA----QELRLRCLV 162

Query: 111 ACRSREFCWQADG---VIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGM 167
             R  E    A      I V  L   E                 + ++  +  ++   G 
Sbjct: 163 TTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDV-LNKTIELSSGN 221

Query: 168 PYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQQHCL 227
           P  L +  K    ++         ++L      E + L  V+      YK+L++  Q C+
Sbjct: 222 PATLMMFFKSCEPKTFEK-MAQLNNKL------ESRGLVGVECITPYSYKSLAMALQRCV 274

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 9e-07
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 281 MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLR 340
                E+   +           S  D    L+ L++    +  LP    RL  L A    
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIA---- 311

Query: 341 SSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELK 383
            S + L ++P     L++   L V +  ++  P     + +L+
Sbjct: 312 -SFNHLAEVPELPQNLKQ---LHVEYNPLREFPDIPESVEDLR 350

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 304 FFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILD 363
               + +L  L L+  NI  + P +S L  L  LF  ++    +   + +  L  +  L 
Sbjct: 302 PISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANN---KVSDVSSLANLTNINWLS 357

Query: 364 VSHTKVQCLPSEIGQLIELKYLRVS 388
             H ++  L   +  L  +  L ++
Sbjct: 358 AGHNQISDLT-PLANLTRITQLGLN 381

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 16/107 (14%), Positives = 37/107 (34%), Gaps = 2/107 (1%)

Query: 276 STLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLN 335
           + L  +     +  L L   RL  LP +    +  L++L   +  +  +    +    L 
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRALPPALAA-LRCLEVLQASDNALENVDGVANL-PRLQ 68

Query: 336 ALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIEL 382
            L L ++          +    +L +L++    +        +L E+
Sbjct: 69  ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 11/85 (12%), Positives = 20/85 (23%)

Query: 304 FFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILD 363
                           N          L          +  +   LP  + +L+ L  L+
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 364 VSHTKVQCLPSEIGQLIELKYLRVS 388
           VS   +     + G L        +
Sbjct: 275 VSFNNLCGEIPQGGNLQRFDVSAYA 299

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	424
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	100.0
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.48
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.38
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.36
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.34
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.33
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.26
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.26
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.25
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.23
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.21
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.13
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	99.07
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.03
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.99
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.91
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.8
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.8
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.79
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.74
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.7
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.64
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.61
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.59
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.59
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.55
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.55
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.51
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.51
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.48
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.44
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.39
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.37
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.35
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.35
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.31
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.25
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.2
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.17
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.09
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.07
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.98
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.82
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.78
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.75
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.65
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.62
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.59
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.56
d1okkd2	207	GTPase domain of the signal recognition particle r	97.47
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.44
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.44
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.41
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.4
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.37
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.35
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.35
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.33
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.3
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.29
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.28
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.28
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.27
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.25
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.2
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.19
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.17
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.15
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.12
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.1
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.04
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.04
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.98
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	96.95
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.95
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.91
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.91
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.9
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.86
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.85
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.81
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.79
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.76
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.75
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.75
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.72
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.72
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.71
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.69
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.67
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.62
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.59
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.55
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.54
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.53
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.52
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.49
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.48
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.46
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	96.42
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.37
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.36
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.35
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.32
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	96.32
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.28
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.28
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.27
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.23
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.19
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.99
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.98
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.92
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.91
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.87
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.86
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.85
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.85
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	95.84
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.83
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.8
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.8
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.8
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.78
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	95.74
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.69
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.64
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.63
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.62
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.6
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.59
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.59
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.51
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.47
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.47
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.28
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.27
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.17
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.17
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.16
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.16
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.13
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.11
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.11
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.08
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.08
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.07
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.01
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	94.9
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.89
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	94.86
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.84
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	94.83
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	94.8
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	94.76
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.7
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.65
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	94.65
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.64
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.64
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	94.63
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.55
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	94.53
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.52
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	94.5
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	94.47
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	94.42
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.39
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.38
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.36
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.34
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.34
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	94.33
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	94.29
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	94.26
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.2
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.18
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	94.13
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	94.13
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	94.13
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.12
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	94.11
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	94.1
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.08
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.07
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	94.06
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.06
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.05
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.02
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.02
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	93.98
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.97
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	93.96
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.95
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	93.95
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	93.9
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.9
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	93.89
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	93.86
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.86
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	93.8
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.75
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.74
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	93.73
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	93.71
d2fh5b1	207	Signal recognition particle receptor beta-subunit	93.68
d1nrjb_	209	Signal recognition particle receptor beta-subunit	93.67
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	93.66
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.66
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.61
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	93.6
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	93.55
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	93.54
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.53
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.53
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	93.52
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.52
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	93.52
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.45
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.44
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.37
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	93.3
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	93.29
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	93.28
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	93.27
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	93.26
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.19
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.19
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	93.02
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	92.94
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	92.86
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	92.8
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	92.72
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	92.69
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	92.68
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	92.58
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	92.54
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	92.51
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	92.47
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	92.47
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	92.41
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.33
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	92.08
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	92.01
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.67
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.55
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	91.28
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	90.85
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	90.68
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	90.58
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.28
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	90.18
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	90.16
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	90.1
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	90.06
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	89.49
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	89.42
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	89.24
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	88.74
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	87.52
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	86.76
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	86.39
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	86.16
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	85.29
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	85.06
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	84.64
d1tuea_	205	Replication protein E1 helicase domain {Human papi	84.19
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	83.17
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	81.9
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	81.68
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	81.61
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	81.41

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=6.3e-36  Score=269.67  Aligned_cols=217  Identities=16%  Similarity=0.118  Sum_probs=174.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc--cCCCCceEEEEEeccCCCHHHHHHHHHHHh---cccc--------cccChhHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG--ESRRFDIIFWENINTDGNIRDIQEIILERL---KVNA--------KELNNDLR   68 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~--~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l---~~~~--------~~~~~~~~   68 (424)
                      ++|+|+|+||+||||||++++++..  ...+|++++|++++...+...+...+...+   +...        ........
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLK  124 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHHHHHHHhcchhhcCCccchhhhhHHHH
Confidence            5899999999999999999998854  467799999999999888777666554443   2221        11122233


Q ss_pred             HHHHHHHhccCcEEEEEcCCCCcchhhhhccCCCCCCcEEEEEecchhhhc---ccCceEEecCCCHHHHHHHHHHHhcc
Q 037045           69 ADIISKELNDRSYVLFLDGVSSEINFKEIGMHDDHGRGKVVFACRSREFCW---QADGVIHVQQLCQREAKKLFWEVVGV  145 (424)
Q Consensus        69 ~~~l~~~l~~~~~LlvlD~~~~~~~~~~~~~~~~~~~~~iiittr~~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~~~  145 (424)
                      ...+.+.+.++++|+||||+|+..+++.+    ...+++||||||++.++.   .....|++++|+.+||++||...++.
T Consensus       125 ~~~~~~~L~~kr~LlVLDDv~~~~~~~~~----~~~~srilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~  200 (277)
T d2a5yb3         125 RMICNALIDRPNTLFVFDDVVQEETIRWA----QELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMP  200 (277)
T ss_dssp             HHHHHHHTTSTTEEEEEEEECCHHHHHHH----HHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCC
T ss_pred             HHHHHHHhccCCeeEecchhhHHhhhhhh----cccCceEEEEeehHHHHHhcCCCCceEECCCCCHHHHHHHHHHHhCC
Confidence            44567788899999999999999888877    234789999999999877   33367999999999999999988876


Q ss_pred             cCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCCcchHHHHHHHHHhhhcCcccccchhhhhHHHhhhhccCCcchHh
Q 037045          146 HLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQSEVAIWRATADELRLTSSEEKKELEEVDRFFTLVYKNLSLEQQH  225 (424)
Q Consensus       146 ~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~  225 (424)
                      .. ..+..++.+++|++.|+|+|+||.++|+.++.+ +.+.|.+..+.+.....      ..+.+++..||+.||+++|.
T Consensus       201 ~~-~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k-~~~~~~~~~~~L~~~~~------~~v~~il~~sY~~L~~~lk~  272 (277)
T d2a5yb3         201 MP-VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TFEKMAQLNNKLESRGL------VGVECITPYSYKSLAMALQR  272 (277)
T ss_dssp             CC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SHHHHHHHHHHHHHHCS------STTCCCSSSSSSSHHHHHHH
T ss_pred             cc-CchhhHHHHHHHHHHhCCCHHHHHHHHHHhccC-CHHHHHHHHHHHhcCcH------HHHHHHHHHHHhcccHHHHH
Confidence            53 345567888999999999999999999999876 88899998888876222      37999999999999999999


Q ss_pred             HHhhh
Q 037045          226 CLLGW  230 (424)
Q Consensus       226 ~~~~l  230 (424)
                      ||.++
T Consensus       273 c~~~l  277 (277)
T d2a5yb3         273 CVEVL  277 (277)
T ss_dssp             HHHTS
T ss_pred             HHHhC
Confidence            99753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=1.5e-14  Score=123.61  Aligned_cols=141  Identities=20%  Similarity=0.318  Sum_probs=119.6

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++|+.|++++|.++.++.+..+++|+.|++++|.++.++.  +..+++|+.|+++++.+..++ .+..+++++.+++  .
T Consensus        68 ~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~--~  142 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYL--G  142 (210)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEEC--C
T ss_pred             CCCCEEeCCCccccCccccccCcccccccccccccccccc--ccccccccccccccccccccc-ccccccccccccc--c
Confidence            7899999999999988878889999999999999998774  678899999999998876654 5788889999998  7


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      .+.+...+ .+..+++|+.+++++|.++.++ .+.++++|+.|++++|.+              ..++.+.+|++|++|+
T Consensus       143 ~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~Ls~N~i--------------~~l~~l~~l~~L~~L~  206 (210)
T d1h6ta2         143 NNKITDIT-VLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHI--------------SDLRALAGLKNLDVLE  206 (210)
T ss_dssp             SSCCCCCG-GGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCC--------------CBCGGGTTCTTCSEEE
T ss_pred             cccccccc-cccccccccccccccccccccc-cccCCCCCCEEECCCCCC--------------CCChhhcCCCCCCEEE
Confidence            77776654 4778899999999999998886 488999999999999964              3456799999999999


Q ss_pred             cC
Q 037045          423 IE  424 (424)
Q Consensus       423 l~  424 (424)
                      |+
T Consensus       207 Ls  208 (210)
T d1h6ta2         207 LF  208 (210)
T ss_dssp             EE
T ss_pred             cc
Confidence            85

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=6.6e-14  Score=118.49  Aligned_cols=138  Identities=20%  Similarity=0.339  Sum_probs=95.9

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++|++|++++|.++.++.+..+++|+.|++++|.+..++.  +..++.|+.|+++++..... ..+..+++|+.+++  .
T Consensus        62 ~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l--~  136 (199)
T d2omxa2          62 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLEL--S  136 (199)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEEC--C
T ss_pred             CCcCcCccccccccCcccccCCcccccccccccccccccc--cccccccccccccccccccc-cccchhhhhHHhhh--h
Confidence            6777777777777776666777777777777777766654  56677777777777665443 23666777777777  6


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCcee
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEEL  421 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  421 (424)
                      ++.+..++ .+..+++|+.|++.+|.++.++ .+.++++|++|++++|++              ..++.+++|++|+.|
T Consensus       137 ~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i--------------~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         137 SNTISDIS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKV--------------SDISVLAKLTNLESL  199 (199)
T ss_dssp             SSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCC--------------CCCGGGGGCTTCSEE
T ss_pred             hhhhcccc-cccccccccccccccccccCCc-cccCCCCCCEEECCCCCC--------------CCCccccCCCCCCcC
Confidence            66666554 4666777777777777777775 377777788888877753              345567778888775

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=6.4e-14  Score=108.62  Aligned_cols=99  Identities=22%  Similarity=0.261  Sum_probs=55.8

Q ss_pred             EEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEecCCc
Q 037045          289 TLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTK  368 (424)
Q Consensus       289 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~  368 (424)
                      .|++++|.++.++.  +..+++|++|++++|.+..+|+.++.+++|+.|++  +++.+..+| .++.+++|+.+++++|+
T Consensus         2 ~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l--~~N~i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA--SDNALENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC--CSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCCcc--cccCCCCCEEECCCCccCcchhhhhhhhccccccc--ccccccccC-ccccccccCeEECCCCc
Confidence            45555555555443  44555555555555555555555555555666655  555555554 25556666666666666


Q ss_pred             Ccccch--hhhcCCCCCEeeeccccC
Q 037045          369 VQCLPS--EIGQLIELKYLRVSRVEN  392 (424)
Q Consensus       369 i~~lp~--~i~~l~~L~~l~l~~n~~  392 (424)
                      ++.+|.  .+..+++|+++++++|++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcC
Confidence            555442  355566666666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=8e-14  Score=117.98  Aligned_cols=141  Identities=17%  Similarity=0.264  Sum_probs=124.2

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++++.|+++++.+..++.+..+++|++|++++|.++.+++  +..+++|++|++++|.+..++. +..+++|+.+++  .
T Consensus        40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l--~  114 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL--F  114 (199)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEC--C
T ss_pred             cCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCCcccccccccccccccccc-cccccccccccc--c
Confidence            7899999999999998888999999999999999999876  7889999999999999877764 889999999999  7


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      ++....++ .+..+++|+.+++++|++..+| .+..+++|+.|++++|.+.              .++.++++++|++|+
T Consensus       115 ~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~--------------~l~~l~~l~~L~~L~  178 (199)
T d2omxa2         115 NNQITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVT--------------DLKPLANLTTLERLD  178 (199)
T ss_dssp             SSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCC--------------CCGGGTTCTTCCEEE
T ss_pred             cccccccc-ccchhhhhHHhhhhhhhhcccc-ccccccccccccccccccc--------------CCccccCCCCCCEEE
Confidence            77776654 4778999999999999998886 5889999999999999643              456789999999999


Q ss_pred             cC
Q 037045          423 IE  424 (424)
Q Consensus       423 l~  424 (424)
                      |+
T Consensus       179 ls  180 (199)
T d2omxa2         179 IS  180 (199)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1e-13  Score=123.02  Aligned_cols=128  Identities=23%  Similarity=0.245  Sum_probs=77.9

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeecc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRS  341 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~  341 (424)
                      ++|+.|++++|.++.++....+++|+.|++++|.++..+.. +..+++|++|+++++.+..++ ..+..+.++.++++  
T Consensus        55 ~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l--  131 (266)
T d1p9ag_          55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL--  131 (266)
T ss_dssp             TTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC--
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccceeeccccccccccccccc--
Confidence            56666777776666665556666677777776666655544 455666666666666654433 34555666666666  


Q ss_pred             cccccccCChh-hhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCC
Q 037045          342 SCSLLLQLPAE-IGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENV  393 (424)
Q Consensus       342 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~  393 (424)
                      ..+.+..+|.. +..+++|+.+++++|+++.+|.. +..+++|++|++++|.+.
T Consensus       132 ~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence            55555555543 34456666666666666655543 566666666666666543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.6e-14  Score=117.77  Aligned_cols=107  Identities=18%  Similarity=0.203  Sum_probs=55.2

Q ss_pred             cCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChh-hhccCCCC
Q 037045          282 PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAE-IGRLQKLE  360 (424)
Q Consensus       282 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~-~~~l~~L~  360 (424)
                      ..+.+++.|++++|+++.++.. +..+++|+.|++++|.+..++ .+..+++|++|++  +++.+..+|.. +..+++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~-~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~l--s~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLV--NNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCG-GGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEEC--CSSCCCEECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCCCCCccCcc-ccccccCCEEECCCCCCCccC-CcccCcchhhhhc--ccccccCCCccccccccccc
Confidence            3444555555555555555432 344555555555555554443 2455555555555  55555555443 23455555


Q ss_pred             EEEecCCcCcccch--hhhcCCCCCEeeeccccC
Q 037045          361 ILDVSHTKVQCLPS--EIGQLIELKYLRVSRVEN  392 (424)
Q Consensus       361 ~L~l~~~~i~~lp~--~i~~l~~L~~l~l~~n~~  392 (424)
                      .|++++|.++.++.  .+..+++|+++++++|++
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             cceeccccccccccccccccccccchhhcCCCcc
Confidence            55555555554442  245555555555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=2.8e-13  Score=115.52  Aligned_cols=141  Identities=18%  Similarity=0.247  Sum_probs=123.4

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      .+++.|+++++.+..++.+..+++|+.|++++|.++++++  +..+++|++|++++|.+..+| .++.+++|+.+++  .
T Consensus        46 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l--~  120 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSL--E  120 (210)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEEC--T
T ss_pred             cCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cccCccccccccccccccccc-ccccccccccccc--c
Confidence            5789999999999998888899999999999999999876  678999999999999998876 5889999999999  7


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhccccCceee
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  422 (424)
                      ++....++ .+..+++++.+++++|.++..+ .+..+++|+++++++|.+.              .+..++++++|++|+
T Consensus       121 ~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~--------------~i~~l~~l~~L~~L~  184 (210)
T d1h6ta2         121 HNGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQIS--------------DIVPLAGLTKLQNLY  184 (210)
T ss_dssp             TSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC--------------CCGGGTTCTTCCEEE
T ss_pred             cccccccc-cccccccccccccccccccccc-ccccccccccccccccccc--------------ccccccCCCCCCEEE
Confidence            77777665 5788999999999999988765 5788999999999999643              455688999999998


Q ss_pred             cC
Q 037045          423 IE  424 (424)
Q Consensus       423 l~  424 (424)
                      ++
T Consensus       185 Ls  186 (210)
T d1h6ta2         185 LS  186 (210)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8e-14  Score=123.65  Aligned_cols=129  Identities=22%  Similarity=0.199  Sum_probs=111.6

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeec
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLR  340 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~  340 (424)
                      ++++.|++++|.++.+|  .+..+++|+.|++++|.++.++.  +..+++|++|++++|.+...+..+..+++|+++++ 
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l-  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV-  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEEC-
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--ccccccccccccccccccccccccccccccccccc-
Confidence            67899999999999865  35789999999999999998765  46789999999999999888888999999999999 


Q ss_pred             ccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCC
Q 037045          341 SSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGN  395 (424)
Q Consensus       341 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~  395 (424)
                       ..+.+..++. .+..+.++..|++++|.++.+|.. +..+++|+.+++++|.+.+.
T Consensus       108 -~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_         108 -SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             -CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             -cccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence             7777777654 567889999999999999988776 67889999999999987654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=2.2e-13  Score=105.56  Aligned_cols=116  Identities=17%  Similarity=0.200  Sum_probs=100.9

Q ss_pred             eEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccc
Q 037045          266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSL  345 (424)
Q Consensus       266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~  345 (424)
                      |.|++++|.++.++.+..+.+|+.|++++|.++++|+. +..+++|+.|++++|.+..+| .++.+++|+.+++  .++.
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l--~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLL--CNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC--CSSC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccccccccC-ccccccccCeEEC--CCCc
Confidence            57999999999999899999999999999999999876 788999999999999998886 4899999999999  8999


Q ss_pred             cccCC--hhhhccCCCCEEEecCCcCcccc---hh-hhcCCCCCEe
Q 037045          346 LLQLP--AEIGRLQKLEILDVSHTKVQCLP---SE-IGQLIELKYL  385 (424)
Q Consensus       346 ~~~lp--~~~~~l~~L~~L~l~~~~i~~lp---~~-i~~l~~L~~l  385 (424)
                      +..+|  ..++.+++|+.+++++|+++..+   .. +..+++|+.+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            98876  46889999999999999987543   33 3456777654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=1.7e-12  Score=112.11  Aligned_cols=141  Identities=19%  Similarity=0.248  Sum_probs=93.5

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCC----------------------C
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHET----------------------N  320 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~----------------------~  320 (424)
                      ++|+.|++++|.+..++.+..+++++.+++++|.++.++.  +..+++|+.++++++                      .
T Consensus        63 ~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~--l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~  140 (227)
T d1h6ua2          63 NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ  140 (227)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             CCCcEeecCCceeecccccccccccccccccccccccccc--ccccccccccccccccccccchhccccchhhhhchhhh
Confidence            5555555555555555445555555555555555554432  344455555555444                      3


Q ss_pred             CCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCC
Q 037045          321 IGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHAD  400 (424)
Q Consensus       321 ~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~  400 (424)
                      +... ..+..+++|+++++  .++.+...+. ++.+++|+.|++++|+++.+|. +.++++|++|++++|++        
T Consensus       141 ~~~~-~~~~~~~~L~~L~l--~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~l--------  207 (227)
T d1h6ua2         141 ITNI-SPLAGLTNLQYLSI--GNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQI--------  207 (227)
T ss_dssp             CCCC-GGGGGCTTCCEEEC--CSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCC--------
T ss_pred             hchh-hhhccccccccccc--cccccccchh-hcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcC--------
Confidence            3222 23566777888888  6666665543 7788899999999998888864 88889999999999864        


Q ss_pred             CCCCCCcChhhhhccccCceeecC
Q 037045          401 AGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       401 ~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                            ..+..++++++|++|+|+
T Consensus       208 ------t~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         208 ------SDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             ------CBCGGGTTCTTCCEEEEE
T ss_pred             ------CCCcccccCCCCCEEEee
Confidence                  345568999999999885

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.6e-13  Score=108.01  Aligned_cols=123  Identities=17%  Similarity=0.256  Sum_probs=107.5

Q ss_pred             cceeEEEeeccCCCCCCCC-cCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChh-hhcccccceeeec
Q 037045          263 AHTKRLSLFGFPSSTLPDM-PNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPS-ISRLINLNALFLR  340 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~l~l~  340 (424)
                      .+++.|++++|.++.++.. ..+++|+.|++++|.++.++.  +..+++|+.|++++|.+..+|+. +..+++|+.|++ 
T Consensus        18 ~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L-   94 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL-   94 (162)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC-
T ss_pred             CcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCcccccccccccccee-
Confidence            6789999999999998776 678999999999999998754  78899999999999999888765 567999999999 


Q ss_pred             ccccccccCCh--hhhccCCCCEEEecCCcCcccch----hhhcCCCCCEeeecc
Q 037045          341 SSCSLLLQLPA--EIGRLQKLEILDVSHTKVQCLPS----EIGQLIELKYLRVSR  389 (424)
Q Consensus       341 ~~~~~~~~lp~--~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~l~l~~  389 (424)
                       .++.+..++.  .+..+++|+++++++|+++.+|.    .+..+++|++|+.+.
T Consensus        95 -~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~  148 (162)
T d1a9na_          95 -TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK  148 (162)
T ss_dssp             -CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             -ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCC
Confidence             8888888764  67889999999999999998874    378899999987543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.38  E-value=1.1e-12  Score=110.04  Aligned_cols=127  Identities=17%  Similarity=0.244  Sum_probs=99.9

Q ss_pred             eEEEeeccCCCCCCCCcCcccccEEEccCCCCCC-CChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeeecccc
Q 037045          266 KRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEK-LPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFLRSSC  343 (424)
Q Consensus       266 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l~~~~  343 (424)
                      ++++.+++.++.+|.-- ..+++.|++++|.++. .+...+..+++|+.|++++|.+..+ +..+..+++|++|++  +.
T Consensus        11 ~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L--s~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL--GE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC--CS
T ss_pred             CEEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee--cc
Confidence            46788888888876421 2578889999999875 5555577888899999988888554 466788888999998  78


Q ss_pred             cccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCC
Q 037045          344 SLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGN  395 (424)
Q Consensus       344 ~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~  395 (424)
                      +.+..+|+ .+..+++|+.|++++|+++.+|.+ +..+++|+++++++|.+.+.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence            88888765 577888999999999998888766 78888899999998876544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.36  E-value=3.3e-12  Score=119.07  Aligned_cols=141  Identities=20%  Similarity=0.284  Sum_probs=96.7

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCC----------------------C
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHET----------------------N  320 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~----------------------~  320 (424)
                      ++++.|++.+|.++.++.+..+++|+.|++++|.+++.++  +..+++|+.|+++++                      .
T Consensus       219 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~  296 (384)
T d2omza2         219 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ  296 (384)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred             CCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCccccccccccccccccc
Confidence            4555555555555555544555555555555555555443  344455555555544                      4


Q ss_pred             CCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCC
Q 037045          321 IGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHAD  400 (424)
Q Consensus       321 ~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~  400 (424)
                      +..+ ..+..+++++.+++  +.+.+..++. +..+++|+.|++++|+++.+| .+.++++|++|++++|.+.       
T Consensus       297 l~~~-~~~~~~~~l~~L~l--s~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~-------  364 (384)
T d2omza2         297 LEDI-SPISNLKNLTYLTL--YFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQIS-------  364 (384)
T ss_dssp             CSCC-GGGGGCTTCSEEEC--CSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCC-------
T ss_pred             cccc-cccchhcccCeEEC--CCCCCCCCcc-cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCC-------
Confidence            4332 34677788888888  7777777763 788899999999999988886 5889999999999998653       


Q ss_pred             CCCCCCcChhhhhccccCceeecC
Q 037045          401 AGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       401 ~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                             .+..+++|++|++|+|+
T Consensus       365 -------~l~~l~~l~~L~~L~L~  381 (384)
T d2omza2         365 -------DLTPLANLTRITQLGLN  381 (384)
T ss_dssp             -------BCGGGTTCTTCSEEECC
T ss_pred             -------CChhhccCCCCCEeeCC
Confidence                   34468899999999985

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.34  E-value=1.3e-12  Score=118.51  Aligned_cols=77  Identities=23%  Similarity=0.306  Sum_probs=33.8

Q ss_pred             cceeEEEeec-cCCCC-CC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCC-CcCChhhhcccccceee
Q 037045          263 AHTKRLSLFG-FPSST-LP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNI-GCLPPSISRLINLNALF  338 (424)
Q Consensus       263 ~~l~~L~l~~-~~~~~-~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~l~  338 (424)
                      ++|++|++++ |.+.+ +| .+..+++|++|++++|.+.+.++..+..++.|++++++.|.+ ..+|..++.+++++.++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence            4555555554 34432 33 335555555555555555443333333344444444444433 33333444444444444


Q ss_pred             e
Q 037045          339 L  339 (424)
Q Consensus       339 l  339 (424)
                      +
T Consensus       156 l  156 (313)
T d1ogqa_         156 F  156 (313)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.8e-12  Score=113.78  Aligned_cols=118  Identities=22%  Similarity=0.263  Sum_probs=53.4

Q ss_pred             hcccCCCcEEEccCCCCCcCC-hhhhcccccceeeecccccccccCCh-hhhccCCCCEEEecCCcCcccchh-hhcCCC
Q 037045          305 FDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSE-IGQLIE  381 (424)
Q Consensus       305 ~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~  381 (424)
                      +..+++|++|++++|.+..++ ..+..+.+|+++++  ..+.+..+|. .+..+++|+.|++++|.++.+|.. +..+++
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l--~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~  178 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL--QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS  178 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhh--ccccccccChhHhccccchhhcccccCcccccchhhhccccc
Confidence            344445555555555443322 23444445555555  4444444432 234444555555555554444332 444555


Q ss_pred             CCEeeeccccCCCCcccCCC----------CCC--CCcChhhhhccccCceeecC
Q 037045          382 LKYLRVSRVENVGNHTHADA----------GSG--EMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       382 L~~l~l~~n~~~~~~~~~~~----------~~~--~~~~~~~l~~l~~L~~L~l~  424 (424)
                      |+++.++.|.+.+..|..-.          +..  .......++.+++|++|+++
T Consensus       179 L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~  233 (284)
T d1ozna_         179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN  233 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             cchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEec
Confidence            55555555544322221000          000  11233456777777777764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.33  E-value=1.1e-11  Score=106.91  Aligned_cols=142  Identities=18%  Similarity=0.299  Sum_probs=114.9

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      .+++.|++.++.++.++.+..+++|+.|++++|.+++..+  +..+++++++++++|.+..++ .+..+++|+++++  .
T Consensus        41 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l--~  115 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL--T  115 (227)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC--T
T ss_pred             CCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccccc-ccccccccccccc--c
Confidence            7899999999999999888999999999999999998876  788999999999999887764 4788999999998  5


Q ss_pred             ccccccCC---------------------hhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCC
Q 037045          343 CSLLLQLP---------------------AEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADA  401 (424)
Q Consensus       343 ~~~~~~lp---------------------~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~  401 (424)
                      ++....++                     ..+..+++|+.|++++|.+...+ .++++++|+.|++++|.+         
T Consensus       116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~l---------  185 (227)
T d1h6ua2         116 STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKI---------  185 (227)
T ss_dssp             TSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCC---------
T ss_pred             cccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch-hhcccccceecccCCCcc---------
Confidence            55443221                     23455677888888888777664 378888888888888854         


Q ss_pred             CCCCCcChhhhhccccCceeecC
Q 037045          402 GSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       402 ~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                           ..+..++++++|++|+|+
T Consensus       186 -----~~l~~l~~l~~L~~L~Ls  203 (227)
T d1h6ua2         186 -----SDISPLASLPNLIEVHLK  203 (227)
T ss_dssp             -----CCCGGGGGCTTCCEEECT
T ss_pred             -----CCChhhcCCCCCCEEECc
Confidence                 345678899999999885

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=2.8e-13  Score=114.19  Aligned_cols=153  Identities=18%  Similarity=0.267  Sum_probs=112.4

Q ss_pred             cceeEEEeecc--CCCCCC-CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeee
Q 037045          263 AHTKRLSLFGF--PSSTLP-DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~--~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l  339 (424)
                      ..++.+++++.  .++.++ .+..+++|+.|++++|.++.++.  +..+++|+.|++++|.+..+|.....+++|+.|++
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEEC
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccCCCCccc--ccCCccccChhhccccccccccccccccccccccc
Confidence            45566777664  233343 34778899999999999998864  77889999999999988888876677788999999


Q ss_pred             cccccccccCChhhhccCCCCEEEecCCcCcccch--hhhcCCCCCEeeeccccCCCCcccCCCCCCCCcChhhhhcccc
Q 037045          340 RSSCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPS--EIGQLIELKYLRVSRVENVGNHTHADAGSGEMISLNIISKLRL  417 (424)
Q Consensus       340 ~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~  417 (424)
                        .++.+..++ .+..+++|+.|++++|+++.++.  .+..+++|+.|++++|++....+...  .........+..+++
T Consensus       101 --~~N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--~~~~~r~~vi~~lp~  175 (198)
T d1m9la_         101 --SYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN--ATSEYRIEVVKRLPN  175 (198)
T ss_dssp             --SEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTT--THHHHHHHHHHHCSS
T ss_pred             --ccccccccc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCccccc--chhhHHHHHHHHCCC
Confidence              788888775 47788899999999999887764  47899999999999987543222100  000011123677888


Q ss_pred             Cceee
Q 037045          418 LEELI  422 (424)
Q Consensus       418 L~~L~  422 (424)
                      |+.||
T Consensus       176 L~~LD  180 (198)
T d1m9la_         176 LKKLD  180 (198)
T ss_dssp             CCEES
T ss_pred             cCEeC
Confidence            88876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.26  E-value=2.7e-11  Score=109.27  Aligned_cols=128  Identities=20%  Similarity=0.285  Sum_probs=72.9

Q ss_pred             cceeEEEeeccCCCCCC-C-CcCcccccEEEccCCCCCCCCh--------------------------------------
Q 037045          263 AHTKRLSLFGFPSSTLP-D-MPNCCEILTLILEGKRLEKLPT--------------------------------------  302 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~-~-~~~~~~L~~L~l~~~~l~~~~~--------------------------------------  302 (424)
                      ++|+.|+++++.+..++ . +..+++|+.|++++|.++.++.                                      
T Consensus        55 ~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n  134 (305)
T d1xkua_          55 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN  134 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS
T ss_pred             ccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccc
Confidence            67888888888888753 2 5778888888888877653321                                      


Q ss_pred             ---------HHhcccCCCcEEEccCCCCCcCC----------------------hhhhcccccceeeecccccccccCC-
Q 037045          303 ---------SFFDYMCHLQLLDLHETNIGCLP----------------------PSISRLINLNALFLRSSCSLLLQLP-  350 (424)
Q Consensus       303 ---------~~~~~~~~L~~L~l~~~~~~~~p----------------------~~~~~l~~L~~l~l~~~~~~~~~lp-  350 (424)
                               ..+..++.|+++++++|.+..+|                      ..+..++.+++|++  ..+.+..++ 
T Consensus       135 ~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~--s~n~l~~~~~  212 (305)
T d1xkua_         135 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL--SFNSISAVDN  212 (305)
T ss_dssp             CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC--CSSCCCEECT
T ss_pred             cccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhcccccccccc--cccccccccc
Confidence                     11223444555555554443332                      23344444555555  444444442 


Q ss_pred             hhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccC
Q 037045          351 AEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVEN  392 (424)
Q Consensus       351 ~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~  392 (424)
                      ..+..+++|+.|++++|.++++|.++..+++|++|++++|++
T Consensus       213 ~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         213 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI  254 (305)
T ss_dssp             TTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred             ccccccccceeeecccccccccccccccccCCCEEECCCCcc
Confidence            344555666666666666666655566666666666666654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=2.8e-11  Score=112.62  Aligned_cols=142  Identities=20%  Similarity=0.270  Sum_probs=115.2

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++++.++++++.++.++....+++|+.|++++|.++.++.  +..+++|+.+++++|.+..+++ ++.+++|+++++  +
T Consensus       197 ~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l--~  271 (384)
T d2omza2         197 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKL--G  271 (384)
T ss_dssp             TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEEC--C
T ss_pred             cccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcch--hhcccccchhccccCccCCCCc-ccccccCCEeec--c
Confidence            7889999999999998777888999999999999998764  6789999999999999877754 888999999999  6


Q ss_pred             ccccccCC---------------------hhhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCCCcccCCC
Q 037045          343 CSLLLQLP---------------------AEIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTHADA  401 (424)
Q Consensus       343 ~~~~~~lp---------------------~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~  401 (424)
                      ++.+..++                     ..+..+++++.+++++|.++.++ .+..+++|++|++++|.+         
T Consensus       272 ~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l---------  341 (384)
T d2omza2         272 ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKV---------  341 (384)
T ss_dssp             SSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCC---------
T ss_pred             CcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCC---------
Confidence            66665443                     23455677788888888777775 377888888888888854         


Q ss_pred             CCCCCcChhhhhccccCceeecC
Q 037045          402 GSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       402 ~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                           ..++.++++++|++|+|+
T Consensus       342 -----~~l~~l~~l~~L~~L~l~  359 (384)
T d2omza2         342 -----SDVSSLANLTNINWLSAG  359 (384)
T ss_dssp             -----CCCGGGGGCTTCCEEECC
T ss_pred             -----CCChhHcCCCCCCEEECC
Confidence                 345578899999999985

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=4.5e-12  Score=106.26  Aligned_cols=130  Identities=18%  Similarity=0.111  Sum_probs=105.0

Q ss_pred             cceeEEEeeccCCCC-CC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCCh-hhhcccccceee
Q 037045          263 AHTKRLSLFGFPSST-LP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPP-SISRLINLNALF  338 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~-~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~l~  338 (424)
                      +++++|++++|.++. ++  .+..+++|+.|++++|.+..++...+..+++|++|++++|++..+|+ .|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            689999999999976 43  33789999999999999999988888999999999999999988764 589999999999


Q ss_pred             ecccccccccCCh-hhhccCCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCCC
Q 037045          339 LRSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENVG  394 (424)
Q Consensus       339 l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~  394 (424)
                      +  +++.+..+|+ .+..+++|+++++++|.+...+...+-...++.+.+..+.+..
T Consensus       109 L--~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c  163 (192)
T d1w8aa_         109 L--YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARC  163 (192)
T ss_dssp             C--CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBB
T ss_pred             c--CCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEe
Confidence            9  8999998876 5788999999999999977544322222234555566655443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.23  E-value=1.6e-11  Score=111.26  Aligned_cols=133  Identities=22%  Similarity=0.357  Sum_probs=110.4

Q ss_pred             cceeEEEeeccCCCC---CC-CCcCcccccEEEccC-CCCC-CCChHHhcccCCCcEEEccCCCCC-cCChhhhcccccc
Q 037045          263 AHTKRLSLFGFPSST---LP-DMPNCCEILTLILEG-KRLE-KLPTSFFDYMCHLQLLDLHETNIG-CLPPSISRLINLN  335 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~---~~-~~~~~~~L~~L~l~~-~~l~-~~~~~~~~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~  335 (424)
                      .+++.|+++++.+..   +| .+..+++|++|++++ |.++ .+|.. +..+++|++|++++|++. ..|..+..+.+|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccccccccccccccchhhhc
Confidence            369999999998885   33 568999999999996 7887 56666 889999999999999994 4566789999999


Q ss_pred             eeeecccccccccCChhhhccCCCCEEEecCCcCc-ccchhhhcCCCC-CEeeeccccCCCCcc
Q 037045          336 ALFLRSSCSLLLQLPAEIGRLQKLEILDVSHTKVQ-CLPSEIGQLIEL-KYLRVSRVENVGNHT  397 (424)
Q Consensus       336 ~l~l~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L-~~l~l~~n~~~~~~~  397 (424)
                      .+++. .+.....+|..++.+++|+.+++++|.+. .+|..+..+.++ +.+.++.|.+.+..+
T Consensus       129 ~l~l~-~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~  191 (313)
T d1ogqa_         129 TLDFS-YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP  191 (313)
T ss_dssp             EEECC-SSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred             ccccc-cccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccc
Confidence            99994 44455678999999999999999999977 889888888876 788888887654433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.3e-11  Score=107.47  Aligned_cols=131  Identities=24%  Similarity=0.331  Sum_probs=114.3

Q ss_pred             cceeEEEeeccCCCCCC--CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeee
Q 037045          263 AHTKRLSLFGFPSSTLP--DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFL  339 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l  339 (424)
                      ++|+.|++++|.+..++  ....+.+|+.+++++|.++.+++..+..+++|+.|++++|.+..+| ..+.++++|+++++
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhh
Confidence            78999999999988754  3467888999999999999998887888999999999999997765 56789999999999


Q ss_pred             cccccccccC-ChhhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCC
Q 037045          340 RSSCSLLLQL-PAEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGN  395 (424)
Q Consensus       340 ~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~  395 (424)
                        ..+.+..+ |..+..+++|+.|++++|.+..+|.. ++.+++|+++++++|++.++
T Consensus       185 --~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         185 --HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             --CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             --hhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence              77777655 67899999999999999999977764 89999999999999987544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.13  E-value=1.9e-12  Score=108.97  Aligned_cols=122  Identities=21%  Similarity=0.205  Sum_probs=103.6

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      ++|++|++++|.++.++.+..+++|+.|++++|.++.++.. ...+++|+.|++++|.+..++ .+..+++|++|++  +
T Consensus        48 ~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L--~  123 (198)
T d1m9la_          48 KACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM--S  123 (198)
T ss_dssp             TTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEE--S
T ss_pred             cccceeECcccCCCCcccccCCccccChhhccccccccccc-ccccccccccccccccccccc-ccccccccccccc--c
Confidence            78999999999999998889999999999999999988754 445678999999999997774 4889999999999  8


Q ss_pred             ccccccCCh--hhhccCCCCEEEecCCcCcccchh-----------hhcCCCCCEeeec
Q 037045          343 CSLLLQLPA--EIGRLQKLEILDVSHTKVQCLPSE-----------IGQLIELKYLRVS  388 (424)
Q Consensus       343 ~~~~~~lp~--~~~~l~~L~~L~l~~~~i~~lp~~-----------i~~l~~L~~l~l~  388 (424)
                      ++.+..++.  .+..+++|+.|++++|++...+..           +.++++|++|+-.
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~  182 (198)
T d1m9la_         124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM  182 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSG
T ss_pred             cchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCc
Confidence            899988863  688999999999999987643221           5678999998744

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.07  E-value=1.3e-09  Score=96.46  Aligned_cols=170  Identities=12%  Similarity=0.166  Sum_probs=100.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-----CCCHHHHHHHHHHHhcccc----------------
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-----DGNIRDIQEIILERLKVNA----------------   60 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~----------------   60 (424)
                      ++|.|+|++|+|||+|++++++...  ..   ..|+++..     ......+...+........                
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~~~--~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINELN--LP---YIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGI  104 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHT--CC---EEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTE
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHCC--CC---eEEEEeccccccccccHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhcc
Confidence            4789999999999999999998772  22   35665433     2234555544444332100                


Q ss_pred             --------------cccChhHHHHHHHHHhccCcEEEEEcCCCCcch------hhhh-ccCCCCCCcEEEEEecchhhhc
Q 037045           61 --------------KELNNDLRADIISKELNDRSYVLFLDGVSSEIN------FKEI-GMHDDHGRGKVVFACRSREFCW  119 (424)
Q Consensus        61 --------------~~~~~~~~~~~l~~~l~~~~~LlvlD~~~~~~~------~~~~-~~~~~~~~~~iiittr~~~~~~  119 (424)
                                    ......+..+.+. ...++++++|+|+++....      +..+ ...........+++.+......
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~~i~id~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~  183 (283)
T d2fnaa2         105 VIMGNEIKFNWNRKDRLSFANLLESFE-QASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLY  183 (283)
T ss_dssp             EECSSSEEEC-----CCCHHHHHHHHH-HTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHH
T ss_pred             cccccccccccchhhhhHHHHHHHHHH-hhcccccccccchhhhhcccchHHHHHHHHHHHHhhhhhhhhhccccchHHH
Confidence                          1111122222221 2346789999999865422      1111 0012223445555544332211


Q ss_pred             --------------ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 037045          120 --------------QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKLIGKELANQ  181 (424)
Q Consensus       120 --------------~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~~a~~l~~~  181 (424)
                                    .....+.+++++.+++.+++.+.........+.    +.+|++.++|+|..+..++..+...
T Consensus       184 ~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~~~G~P~~L~~~~~~~~~~  255 (283)
T d2fnaa2         184 DYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIGGIPGWLTYFGFIYLDN  255 (283)
T ss_dssp             HHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhhhhcCCCHHH----HHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                          124568899999999999998776443222222    4579999999999999998766554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.03  E-value=7e-10  Score=99.71  Aligned_cols=127  Identities=13%  Similarity=0.191  Sum_probs=110.5

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcC-Chhhhcccccceeeecc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCL-PPSISRLINLNALFLRS  341 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~l~l~~  341 (424)
                      ++++.+++.+|.+..+|.. .+++|+.|++++|..+..+...+..++.+++|++++|.+..+ +..+..+++|++|++  
T Consensus       150 ~~L~~l~l~~n~l~~l~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L--  226 (305)
T d1xkua_         150 KKLSYIRIADTNITTIPQG-LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL--  226 (305)
T ss_dssp             TTCCEEECCSSCCCSCCSS-CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC--
T ss_pred             cccCccccccCCccccCcc-cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeec--
Confidence            6889999999998887643 478999999999999987777788899999999999999666 456889999999999  


Q ss_pred             cccccccCChhhhccCCCCEEEecCCcCcccchh-------hhcCCCCCEeeeccccC
Q 037045          342 SCSLLLQLPAEIGRLQKLEILDVSHTKVQCLPSE-------IGQLIELKYLRVSRVEN  392 (424)
Q Consensus       342 ~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-------i~~l~~L~~l~l~~n~~  392 (424)
                      +++.+..+|..+..+++|+.|++++|+++.++..       ...+.+|+.+++++|++
T Consensus       227 ~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         227 NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            8889999999999999999999999999988653       24667899999999975

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.2e-09  Score=87.59  Aligned_cols=100  Identities=17%  Similarity=0.119  Sum_probs=48.4

Q ss_pred             EEeeccCCCCCC-CCcCcccccEEEccCC-CCCCCChHHhcccCCCcEEEccCCCCCcCC-hhhhcccccceeeeccccc
Q 037045          268 LSLFGFPSSTLP-DMPNCCEILTLILEGK-RLEKLPTSFFDYMCHLQLLDLHETNIGCLP-PSISRLINLNALFLRSSCS  344 (424)
Q Consensus       268 L~l~~~~~~~~~-~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~l~l~~~~~  344 (424)
                      ++..++.+...| .+..+++|+.|++++| .++.++...|..+++|+.|++++|++..++ ..|..+++|++|++  +++
T Consensus        13 l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L--s~N   90 (156)
T d2ifga3          13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL--SFN   90 (156)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC--CSS
T ss_pred             EEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec--cCC
Confidence            444444444432 2344455555555433 355554444455555555555555554442 33455555555555  455


Q ss_pred             ccccCChhhhccCCCCEEEecCCcC
Q 037045          345 LLLQLPAEIGRLQKLEILDVSHTKV  369 (424)
Q Consensus       345 ~~~~lp~~~~~l~~L~~L~l~~~~i  369 (424)
                      .+..+|..+....+|+.|++++|++
T Consensus        91 ~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          91 ALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCcccChhhhccccccccccCCCcc
Confidence            5555554433334455555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.7e-10  Score=100.45  Aligned_cols=150  Identities=20%  Similarity=0.217  Sum_probs=100.6

Q ss_pred             cceeEEEeeccCCCC--CCCCcCcccccEEEccCC-CCCCCC-hHHhcccCCCcEEEccCC-CCCc--CChhhhc-cccc
Q 037045          263 AHTKRLSLFGFPSST--LPDMPNCCEILTLILEGK-RLEKLP-TSFFDYMCHLQLLDLHET-NIGC--LPPSISR-LINL  334 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~-~l~~~~-~~~~~~~~~L~~L~l~~~-~~~~--~p~~~~~-l~~L  334 (424)
                      ++|++|++.++.+..  +..+..+++|+.|+++++ .+++.. ......+++|++|+++++ .+.+  ++..+.. .++|
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L  150 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  150 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccccc
Confidence            788888888887664  334467788888888874 555322 222456788999998886 3422  2233333 3678


Q ss_pred             ceeeecccc-cccc--cCChhhhccCCCCEEEecCCc-Cc-ccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCcCh
Q 037045          335 NALFLRSSC-SLLL--QLPAEIGRLQKLEILDVSHTK-VQ-CLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMISL  409 (424)
Q Consensus       335 ~~l~l~~~~-~~~~--~lp~~~~~l~~L~~L~l~~~~-i~-~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~  409 (424)
                      +.|++. .+ ..+.  .+..-...+++|+.|++++|. ++ ..+..+.++++|++|++++|...           ....+
T Consensus       151 ~~L~l~-~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i-----------~~~~l  218 (284)
T d2astb2         151 TQLNLS-GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI-----------IPETL  218 (284)
T ss_dssp             CEEECC-SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC-----------CGGGG
T ss_pred             chhhhc-ccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCC-----------ChHHH
Confidence            888883 32 2232  233344678899999998875 66 44556888999999999987422           12456


Q ss_pred             hhhhccccCceeecC
Q 037045          410 NIISKLRLLEELIIE  424 (424)
Q Consensus       410 ~~l~~l~~L~~L~l~  424 (424)
                      ..++++++|++|+++
T Consensus       219 ~~L~~~~~L~~L~l~  233 (284)
T d2astb2         219 LELGEIPTLKTLQVF  233 (284)
T ss_dssp             GGGGGCTTCCEEECT
T ss_pred             HHHhcCCCCCEEeee
Confidence            678889999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.80  E-value=2.1e-08  Score=91.36  Aligned_cols=150  Identities=22%  Similarity=0.241  Sum_probs=98.7

Q ss_pred             cceeEEEeeccCCCCCCCCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeeccc
Q 037045          263 AHTKRLSLFGFPSSTLPDMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSS  342 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~  342 (424)
                      .++++|+++++.++.+|..  .++|+.|++++|.++.+|..    +.+|+.|++++|.+..++..   .+.|++|++  +
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L--~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSDL---PPLLEYLGV--S  106 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCSC---CTTCCEEEC--C
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc----hhhhhhhhhhhcccchhhhh---ccccccccc--c
Confidence            5678888888888887753  56788888888888887753    45788888888877665531   245888888  7


Q ss_pred             ccccccCChhhhccCCCCEEEecCCcCcccch-------------------hhhcCCCCCEeeeccccCCCCccc-----
Q 037045          343 CSLLLQLPAEIGRLQKLEILDVSHTKVQCLPS-------------------EIGQLIELKYLRVSRVENVGNHTH-----  398 (424)
Q Consensus       343 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-------------------~i~~l~~L~~l~l~~n~~~~~~~~-----  398 (424)
                      ++.+..+|. ++.+++|+.++++++.+...|.                   .+..++.++.+.++.|........     
T Consensus       107 ~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~  185 (353)
T d1jl5a_         107 NNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE  185 (353)
T ss_dssp             SSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred             ccccccccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccc
Confidence            778888875 5678888888888776654432                   234555666677766654322111     


Q ss_pred             -CCCCCCCCcChhhhhccccCceeecC
Q 037045          399 -ADAGSGEMISLNIISKLRLLEELIIE  424 (424)
Q Consensus       399 -~~~~~~~~~~~~~l~~l~~L~~L~l~  424 (424)
                       ..........+..+..++.|+.|+++
T Consensus       186 ~l~~~~~~~~~~~~~~~l~~L~~l~l~  212 (353)
T d1jl5a_         186 SIVAGNNILEELPELQNLPFLTTIYAD  212 (353)
T ss_dssp             EEECCSSCCSSCCCCTTCTTCCEEECC
T ss_pred             ccccccccccccccccccccccccccc
Confidence             11112223344556667777777653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.1e-08  Score=81.91  Aligned_cols=111  Identities=16%  Similarity=0.015  Sum_probs=94.0

Q ss_pred             CCcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCC-CCCcCC-hhhhcccccceeeecccccccccCCh-hhhcc
Q 037045          280 DMPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHET-NIGCLP-PSISRLINLNALFLRSSCSLLLQLPA-EIGRL  356 (424)
Q Consensus       280 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~p-~~~~~l~~L~~l~l~~~~~~~~~lp~-~~~~l  356 (424)
                      ....|.....++++++.+...|.. +..+++|+.|++.++ .+..++ ..|..+++|+.|++  +++.+..+++ .+..+
T Consensus         3 ~~C~c~~~~~l~c~~~~~~~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~L--s~N~l~~i~~~~f~~l   79 (156)
T d2ifga3           3 DACCPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI--VKSGLRFVAPDAFHFT   79 (156)
T ss_dssp             SSSCCSSSSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEEC--CSSCCCEECTTGGGSC
T ss_pred             CCCCcCCCCeEEecCCCCccCccc-ccCccccCeeecCCCccccccCchhhccccccCccee--eccccCCccccccccc
Confidence            345566678899999999988877 677899999999877 478876 45899999999999  8899998854 68899


Q ss_pred             CCCCEEEecCCcCcccchhhhcCCCCCEeeeccccCC
Q 037045          357 QKLEILDVSHTKVQCLPSEIGQLIELKYLRVSRVENV  393 (424)
Q Consensus       357 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~l~l~~n~~~  393 (424)
                      ++|+.|++++|+++.+|........|++|++++|++.
T Consensus        80 ~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          80 PRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccccceeccCCCCcccChhhhccccccccccCCCccc
Confidence            9999999999999999988555567999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1e-08  Score=88.60  Aligned_cols=160  Identities=14%  Similarity=0.163  Sum_probs=94.7

Q ss_pred             cceeEEEeeccCCCCCCC--CcCcccccEEEccCCCCCC-CChHHhcccCCCcEEEccC-CCCCcC-Chhhhccccccee
Q 037045          263 AHTKRLSLFGFPSSTLPD--MPNCCEILTLILEGKRLEK-LPTSFFDYMCHLQLLDLHE-TNIGCL-PPSISRLINLNAL  337 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~-~~~~~~-p~~~~~l~~L~~l  337 (424)
                      .+++.|++++|.++.+|.  +.++++|++|++++|.+.. ++...+..++.++.+.+.. +.+... +..+..+++|+.+
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            577888888888887654  4778888888888887765 4454466677778877654 355443 3456778888888


Q ss_pred             eecccccccccCCh--hhhccCCCCEEEecCCcCcccchh-hhcCC-CCCEeeeccccCCCCccc----------CCCCC
Q 037045          338 FLRSSCSLLLQLPA--EIGRLQKLEILDVSHTKVQCLPSE-IGQLI-ELKYLRVSRVENVGNHTH----------ADAGS  403 (424)
Q Consensus       338 ~l~~~~~~~~~lp~--~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~-~L~~l~l~~n~~~~~~~~----------~~~~~  403 (424)
                      ++  ..+.+...+.  .+..+..+..+...++.+..++.. +..++ .+..++++.|.+....+.          .....
T Consensus       109 ~l--~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~  186 (242)
T d1xwdc1         109 LI--SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN  186 (242)
T ss_dssp             EE--ESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTC
T ss_pred             cc--chhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccc
Confidence            88  5666655443  223344444444455555555433 33333 566667666654321111          01111


Q ss_pred             CCCcChh--hhhccccCceeecC
Q 037045          404 GEMISLN--IISKLRLLEELIIE  424 (424)
Q Consensus       404 ~~~~~~~--~l~~l~~L~~L~l~  424 (424)
                      .....++  .+.++++|++|+|+
T Consensus       187 n~l~~l~~~~f~~l~~L~~L~Ls  209 (242)
T d1xwdc1         187 NNLEELPNDVFHGASGPVILDIS  209 (242)
T ss_dssp             TTCCCCCTTTTTTSCCCSEEECT
T ss_pred             cccccccHHHhcCCCCCCEEECC
Confidence            1222232  26778888888874

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=6.7e-08  Score=82.26  Aligned_cols=152  Identities=16%  Similarity=0.140  Sum_probs=94.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL   83 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll   83 (424)
                      +.++|++|+||||+|+.+++.......-..+.-++.+...+...+...+..........             ..++.-++
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~~~~i~~~~~~~~~~~~~~-------------~~~~~kvi  105 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHL-------------PPGKHKIV  105 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCC-------------CTTCCEEE
T ss_pred             EEEECCCCCCchhhHHHHHHHHhccccccccccccccccCCceehhhHHHHHHHhhccC-------------CCcceEEE
Confidence            57899999999999999998863211112244555555555444443332222111100             01345689


Q ss_pred             EEcCCCCcchhhhhcc----CCCCCCcEEEEEecchhhh-c---ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHH
Q 037045           84 FLDGVSSEINFKEIGM----HDDHGRGKVVFACRSREFC-W---QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIEL  155 (424)
Q Consensus        84 vlD~~~~~~~~~~~~~----~~~~~~~~iiittr~~~~~-~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~  155 (424)
                      |+|+++....-..-.+    ......++++++|...... .   .....+.+.+.+.++-.+++.+.+..+.  ....++
T Consensus       106 iiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~~i~~~~~~~~~i~~~l~~i~~~e~--~~i~~~  183 (224)
T d1sxjb2         106 ILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLED--VKYTND  183 (224)
T ss_dssp             EEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT--CCBCHH
T ss_pred             EEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHHHhhhcccchhhhHHHHHHHHHhcc--cCCCHH
Confidence            9999988654332212    1344456666666554333 2   7788999999999999999988886542  122345


Q ss_pred             HHHHHHHhcCCchHH
Q 037045          156 VADSIVKECGGMPYM  170 (424)
Q Consensus       156 ~~~~I~~~~~g~Pla  170 (424)
                      ....|++.|+|.+..
T Consensus       184 ~l~~I~~~s~Gd~R~  198 (224)
T d1sxjb2         184 GLEAIIFTAEGDMRQ  198 (224)
T ss_dssp             HHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCcHHH
Confidence            678999999998743

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.70  E-value=4.1e-07  Score=79.48  Aligned_cols=160  Identities=16%  Similarity=0.127  Sum_probs=101.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCC-ceEEEEEeccCCCHHHHHHHHHHHhcccc--cccChhHHHHHHHHHhcc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRF-DIIFWENINTDGNIRDIQEIILERLKVNA--KELNNDLRADIISKELND   78 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~~~l~~   78 (424)
                      +.+.|+|++|+|||++|+.+++...  ... ...+|+..............+....+...  ...........+.+.+..
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYK--DKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRE  121 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT--TSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHh--cccCCcEEEecchhhhhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhh
Confidence            4688999999999999999999984  333 34678888888888888888888877655  334445555555554433


Q ss_pred             --CcEEEEEcCCCCcch-----hhhhccC---CCCCCcEEEEEecchhhhc---------ccCceEEecCCCHHHHHHHH
Q 037045           79 --RSYVLFLDGVSSEIN-----FKEIGMH---DDHGRGKVVFACRSREFCW---------QADGVIHVQQLCQREAKKLF  139 (424)
Q Consensus        79 --~~~LlvlD~~~~~~~-----~~~~~~~---~~~~~~~iiittr~~~~~~---------~~~~~~~l~~l~~~~~~~l~  139 (424)
                        .....++|.++....     ...+...   .......+|.++.......         .....+.+.+.+.++..+++
T Consensus       122 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il  201 (276)
T d1fnna2         122 RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDIL  201 (276)
T ss_dssp             TTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHH
T ss_pred             cccccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHHHH
Confidence              467778888776532     1111111   2233344555555433221         33456889999999999999


Q ss_pred             HHHhcccCCCCccHHHHHHHHHHh
Q 037045          140 WEVVGVHLKKYPDIELVADSIVKE  163 (424)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~I~~~  163 (424)
                      .+++..........++..+.|++.
T Consensus       202 ~~r~~~~~~~~~~~~~~l~~ia~~  225 (276)
T d1fnna2         202 LDRAKAGLAEGSYSEDILQMIADI  225 (276)
T ss_dssp             HHHHHHHBCTTSSCHHHHHHHHHH
T ss_pred             HHHHHHhcccccccHHHHHHHHHH
Confidence            887653211222234445555553

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=1.4e-07  Score=80.43  Aligned_cols=149  Identities=13%  Similarity=0.104  Sum_probs=90.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL   83 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll   83 (424)
                      +.++|++|+||||+|+.+++..........+.-...+...+...............              ....++..++
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~kii  103 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTR--------------QIFSKGFKLI  103 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBC--------------CSSSCSCEEE
T ss_pred             EEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCCeeeeecchhhccccc--------------cccCCCeEEE
Confidence            56899999999999999999864222222233334444433332222221111100              0112345689


Q ss_pred             EEcCCCCcchhhhh----ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCCccHHH
Q 037045           84 FLDGVSSEINFKEI----GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDIEL  155 (424)
Q Consensus        84 vlD~~~~~~~~~~~----~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~  155 (424)
                      |+|+++.......-    .+......+.++++|.......    .....+++.+++.++-.+++.+.+..+.  -...++
T Consensus       104 iiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr~~~i~~~~~~~~~i~~~l~~I~~~e~--i~i~~~  181 (227)
T d1sxjc2         104 ILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEK--LKLSPN  181 (227)
T ss_dssp             EETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTT--CCBCHH
T ss_pred             EEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHHHHHhhhcccccccccccccccccccccc--ccCCHH
Confidence            99999876432222    1123345677777776543333    7788999999999999999998876542  122345


Q ss_pred             HHHHHHHhcCCch
Q 037045          156 VADSIVKECGGMP  168 (424)
Q Consensus       156 ~~~~I~~~~~g~P  168 (424)
                      ....|++.+.|..
T Consensus       182 ~l~~i~~~s~Gd~  194 (227)
T d1sxjc2         182 AEKALIELSNGDM  194 (227)
T ss_dssp             HHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCcH
Confidence            6788999999874

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=8.3e-07  Score=76.04  Aligned_cols=162  Identities=15%  Similarity=0.107  Sum_probs=91.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHHh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKEL   76 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~l   76 (424)
                      .+.|+|++|+||||+|+.+++........+.       ...........+...-....      .....++ ...+.+.+
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~-ir~~~~~~  107 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQGRFVDLIEIDAASRTKVED-TRDLLDNV  107 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHCTTCSCS-------SCCSCSHHHHHHHHTCCTTEEEEETTCSSSHHH-HHHHHHSC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhcCcccccc-------CccccchHHHHHHcCCCCeEEEecchhcCCHHH-HHHHHHHH
Confidence            4679999999999999999887632221110       00011111111111100000      0011111 11122222


Q ss_pred             -----ccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHh
Q 037045           77 -----NDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVV  143 (424)
Q Consensus        77 -----~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~  143 (424)
                           .++..++|||+++....  ...+  .+-.....+.+|++|.+.....    .....+.+.+++.++-.+.+.+.+
T Consensus       108 ~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~  187 (239)
T d1njfa_         108 QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL  187 (239)
T ss_dssp             CCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred             HhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCccccChhHhhhhcccccccCcHHHhhhHHHHHH
Confidence                 13456999999998632  2222  1113445667777776544433    788899999999999999988887


Q ss_pred             cccCCCCccHHHHHHHHHHhcCCchH-HHHHH
Q 037045          144 GVHLKKYPDIELVADSIVKECGGMPY-MLKLI  174 (424)
Q Consensus       144 ~~~~~~~~~~~~~~~~I~~~~~g~Pl-ai~~~  174 (424)
                      .....  ...++.+..|++.++|.+. |+..+
T Consensus       188 ~~e~~--~~~~~~l~~i~~~s~Gd~R~ain~l  217 (239)
T d1njfa_         188 NEEHI--AHEPRALQLLARAAEGSLRDALSLT  217 (239)
T ss_dssp             HHHTC--CBCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             hhhcc--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            65521  2335577889999999885 45443

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=2e-07  Score=79.94  Aligned_cols=160  Identities=14%  Similarity=0.105  Sum_probs=95.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccC-CCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGES-RRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      -+.++|++|+||||+|+.+++..... ........++.+...........+-...........    ...+......+.-
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  110 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPS----KHDLENYPCPPYK  110 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCC----TTHHHHSCCCSCE
T ss_pred             eEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchHHHHHHHHHhhhhhhhhh----HHHHhhccccCce
Confidence            36799999999999999999875321 112234455555555555444333322221111111    1112222233445


Q ss_pred             EEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCCccH
Q 037045           82 VLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPDI  153 (424)
Q Consensus        82 LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~  153 (424)
                      ++|+|+++....  ...+  .+......+.+++++.......    .....+.+.+++.++..+++.+.+....  -...
T Consensus       111 viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~sr~~~i~f~~~~~~~~~~~L~~i~~~e~--i~i~  188 (237)
T d1sxjd2         111 IIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQEN--VKCD  188 (237)
T ss_dssp             EEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTT--CCCC
T ss_pred             EEEEecccccCHHHHHHHhhccccccccccccccccccccccccccchhhhhccccccccccchhhhhhhhhhc--CcCC
Confidence            799999987642  2222  1113445666777665533333    6667899999999999999998876542  1233


Q ss_pred             HHHHHHHHHhcCCch
Q 037045          154 ELVADSIVKECGGMP  168 (424)
Q Consensus       154 ~~~~~~I~~~~~g~P  168 (424)
                      ++....|++.++|.+
T Consensus       189 ~~~l~~ia~~s~gd~  203 (237)
T d1sxjd2         189 DGVLERILDISAGDL  203 (237)
T ss_dssp             HHHHHHHHHHTSSCH
T ss_pred             HHHHHHHHHHcCCCH
Confidence            567788999998865

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=4.6e-08  Score=84.27  Aligned_cols=129  Identities=15%  Similarity=0.151  Sum_probs=69.6

Q ss_pred             cceeEEEeec-cCCCCC-CC-CcCcccccEEEccCCCCCCCChH-HhcccCCCcEEEccCCCCCcCC-hhhhcc-cccce
Q 037045          263 AHTKRLSLFG-FPSSTL-PD-MPNCCEILTLILEGKRLEKLPTS-FFDYMCHLQLLDLHETNIGCLP-PSISRL-INLNA  336 (424)
Q Consensus       263 ~~l~~L~l~~-~~~~~~-~~-~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~~~~~p-~~~~~l-~~L~~  336 (424)
                      +.++.+.+.. +.+... +. +..+++|+.+++++|.+...+.. ....+..+..+...++.+..++ ..+..+ ..+..
T Consensus        78 ~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~  157 (242)
T d1xwdc1          78 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI  157 (242)
T ss_dssp             TTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred             cccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccccccee
Confidence            4556665543 344432 22 35666777777777766654331 1222344444444444554443 233333 35666


Q ss_pred             eeecccccccccCChhhhccCCCCEEE-ecCCcCcccchh-hhcCCCCCEeeeccccCC
Q 037045          337 LFLRSSCSLLLQLPAEIGRLQKLEILD-VSHTKVQCLPSE-IGQLIELKYLRVSRVENV  393 (424)
Q Consensus       337 l~l~~~~~~~~~lp~~~~~l~~L~~L~-l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~  393 (424)
                      +++  .++.+..++.......++..+. +.+|.++.+|.. +..+++|++|++++|++.
T Consensus       158 L~l--~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         158 LWL--NKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             EEC--CSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             eec--ccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            666  6666666665555555544443 345556666654 566777777777776653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.6e-08  Score=88.25  Aligned_cols=152  Identities=18%  Similarity=0.216  Sum_probs=111.1

Q ss_pred             cccceeEEEeeccCCCC--CCC-CcCcccccEEEccCCCCCCCChHHhcccCCCcEEEccCC-CCCc--CChhhhccccc
Q 037045          261 GDAHTKRLSLFGFPSST--LPD-MPNCCEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHET-NIGC--LPPSISRLINL  334 (424)
Q Consensus       261 ~~~~l~~L~l~~~~~~~--~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~--~p~~~~~l~~L  334 (424)
                      ...++++|+++++.+..  ++. ...|++|+.|+++++.+++.....+..+++|++|+++++ .+++  +..-...+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            33689999999987765  333 378999999999999988654455778899999999997 4532  33335678999


Q ss_pred             ceeeecccccccc--cCChhhhc-cCCCCEEEecCCc--Cc--ccchhhhcCCCCCEeeeccccCCCCcccCCCCCCCCc
Q 037045          335 NALFLRSSCSLLL--QLPAEIGR-LQKLEILDVSHTK--VQ--CLPSEIGQLIELKYLRVSRVENVGNHTHADAGSGEMI  407 (424)
Q Consensus       335 ~~l~l~~~~~~~~--~lp~~~~~-l~~L~~L~l~~~~--i~--~lp~~i~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~  407 (424)
                      ++|+++ .+..+.  .++..+.. +++|+.|+++++.  ++  .+..-..++++|++|++++|...           ...
T Consensus       124 ~~L~ls-~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~i-----------td~  191 (284)
T d2astb2         124 DELNLS-WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML-----------KND  191 (284)
T ss_dssp             CEEECC-CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC-----------CGG
T ss_pred             cccccc-cccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCC-----------Cch
Confidence            999994 444553  23333433 4789999998763  44  34433568899999999998532           224


Q ss_pred             ChhhhhccccCceeecC
Q 037045          408 SLNIISKLRLLEELIIE  424 (424)
Q Consensus       408 ~~~~l~~l~~L~~L~l~  424 (424)
                      .+..++++++|++|+|+
T Consensus       192 ~~~~l~~~~~L~~L~L~  208 (284)
T d2astb2         192 CFQEFFQLNYLQHLSLS  208 (284)
T ss_dssp             GGGGGGGCTTCCEEECT
T ss_pred             hhhhhcccCcCCEEECC
Confidence            67788899999999985

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.55  E-value=1.2e-06  Score=76.89  Aligned_cols=162  Identities=15%  Similarity=0.127  Sum_probs=98.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhcc----CCCCceEEEEEeccCCCHHHHHHHHHHHhcccc--cccChhHHHHHHHHHh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGE----SRRFDIIFWENINTDGNIRDIQEIILERLKVNA--KELNNDLRADIISKEL   76 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~~~l   76 (424)
                      ++.|+|++|+|||++++.+++....    ........++.+................++...  ...........+.+..
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  127 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNL  127 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccccccchhhHHHHHhhhcccccccccchHHHHHHHHHHHH
Confidence            4567899999999999999988632    222345678888888888888888888777655  3444445455555544


Q ss_pred             c--cCcEEEEEcCCCCcc--------hhhhh-----cc-C-CCCCCcE-EEEEecchhhhc----------ccCceEEec
Q 037045           77 N--DRSYVLFLDGVSSEI--------NFKEI-----GM-H-DDHGRGK-VVFACRSREFCW----------QADGVIHVQ  128 (424)
Q Consensus        77 ~--~~~~LlvlD~~~~~~--------~~~~~-----~~-~-~~~~~~~-iiittr~~~~~~----------~~~~~~~l~  128 (424)
                      .  +...++++|.++...        ....+     .. + ....... |++++.......          .....+.++
T Consensus       128 ~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~  207 (287)
T d1w5sa2         128 YVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLP  207 (287)
T ss_dssp             HHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECC
T ss_pred             HhccCccccceeEEEEeccccccchhHHHHHHHHHHhcchhhcccceeEEeecccHHHHHHHHhhccchhcccceeeecc
Confidence            3  356788888876431        11111     01 1 1122333 334443322111          345788999


Q ss_pred             CCCHHHHHHHHHHHhcccCCCCccHHHHHHHHHHhc
Q 037045          129 QLCQREAKKLFWEVVGVHLKKYPDIELVADSIVKEC  164 (424)
Q Consensus       129 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~  164 (424)
                      +++.++..+++..++..........++....|++..
T Consensus       208 ~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~~  243 (287)
T d1w5sa2         208 AYKSRELYTILEQRAELGLRDTVWEPRHLELISDVY  243 (287)
T ss_dssp             CCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHHHH
Confidence            999999999999887432112222245566666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.55  E-value=1.1e-07  Score=86.28  Aligned_cols=126  Identities=23%  Similarity=0.217  Sum_probs=92.7

Q ss_pred             ccccEEEccCCCCCCCChHHhcccCCCcEEEccCCCCCcCChhhhcccccceeeecccccccccCChhhhccCCCCEEEe
Q 037045          285 CEILTLILEGKRLEKLPTSFFDYMCHLQLLDLHETNIGCLPPSISRLINLNALFLRSSCSLLLQLPAEIGRLQKLEILDV  364 (424)
Q Consensus       285 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~lp~~~~~l~~L~~L~l  364 (424)
                      .++++|+++++.++.+|+.    .++|++|++++|++..+|..   +.+|+.|++  ..+.+..++.-   .+.|+.|++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~----~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l--~~n~l~~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPEL---PQSLKSLLV--DNNNLKALSDL---PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC----CTTCSEEECCSSCCSSCCCC---CTTCCEEEC--CSSCCSCCCSC---CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCCCCCCC----CCCCCEEECCCCCCcccccc---hhhhhhhhh--hhcccchhhhh---ccccccccc
Confidence            5799999999999998863    57899999999999999865   457888888  77788777642   146999999


Q ss_pred             cCCcCcccchhhhcCCCCCEeeeccccCCCCccc------CCCCCCCCcChhhhhccccCceeec
Q 037045          365 SHTKVQCLPSEIGQLIELKYLRVSRVENVGNHTH------ADAGSGEMISLNIISKLRLLEELII  423 (424)
Q Consensus       365 ~~~~i~~lp~~i~~l~~L~~l~l~~n~~~~~~~~------~~~~~~~~~~~~~l~~l~~L~~L~l  423 (424)
                      ++|.+..+|. ++.+++|+++++++|.+.+....      .............++.++.++.|.+
T Consensus       106 ~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l  169 (353)
T d1jl5a_         106 SNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYA  169 (353)
T ss_dssp             CSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEEC
T ss_pred             cccccccccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccc
Confidence            9999999985 68899999999999876443222      1111112233344556666666654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=1.9e-07  Score=80.83  Aligned_cols=91  Identities=12%  Similarity=0.103  Sum_probs=58.0

Q ss_pred             CcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCC
Q 037045           79 RSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKY  150 (424)
Q Consensus        79 ~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~  150 (424)
                      +.-++|+|+++....  ...+  .+......+++|+||.+.....    .....+++.+++.++..+++.+.+..+.. .
T Consensus       131 ~~~iiiide~d~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~-~  209 (252)
T d1sxje2         131 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-Q  209 (252)
T ss_dssp             CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-E
T ss_pred             CceEEEeccccccccccchhhhcccccccccccceeeeccccchhhhhhcchheeeecccchhhHHHHHHHHHHHcCC-C
Confidence            455899999987531  2222  1113345577777776544332    45678899999999999999877654321 1


Q ss_pred             ccHHHHHHHHHHhcCCchHH
Q 037045          151 PDIELVADSIVKECGGMPYM  170 (424)
Q Consensus       151 ~~~~~~~~~I~~~~~g~Pla  170 (424)
                      ...++....|++.+.|.+..
T Consensus       210 ~~~~~~l~~i~~~s~Gd~R~  229 (252)
T d1sxje2         210 LETKDILKRIAQASNGNLRV  229 (252)
T ss_dssp             ECCSHHHHHHHHHHTTCHHH
T ss_pred             CCcHHHHHHHHHHcCCcHHH
Confidence            11234567899999998743

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.51  E-value=3.7e-07  Score=77.88  Aligned_cols=151  Identities=16%  Similarity=0.133  Sum_probs=87.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCce-EEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDI-IFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRS   80 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~   80 (424)
                      +-+.|+|++|+||||+|+.+++... ...++. .+-++.+...+...+...........              .....+.
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~-~~~~~~~~~e~n~s~~~~~~~~~~~~~~~~~~~--------------~~~~~~~  110 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGINVIREKVKEFARTK--------------PIGGASF  110 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSC--------------CGGGCSC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHH-hcccCCCeeEEecCcccchhHHHHHHHHHHhhh--------------hccCCCc
Confidence            3467999999999999999998763 112221 33334332211111111111110000              0112367


Q ss_pred             EEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchhhhc----ccCceEEecCCCHHHHHHHHHHHhcccCCCCcc
Q 037045           81 YVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSREFCW----QADGVIHVQQLCQREAKKLFWEVVGVHLKKYPD  152 (424)
Q Consensus        81 ~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~  152 (424)
                      .++++|+++....  ...+  .+......+.+|.+|.......    .....+.+.+.+.++..+.+.+.+....  -..
T Consensus       111 ~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~e~--i~i  188 (231)
T d1iqpa2         111 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG--LEL  188 (231)
T ss_dssp             EEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTT--CEE
T ss_pred             eEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCccccccccccchhhHHHHHHHHHHHhC--CCC
Confidence            7999999987532  2222  1112333455666655443322    5667899999999999999998886542  223


Q ss_pred             HHHHHHHHHHhcCCchH
Q 037045          153 IELVADSIVKECGGMPY  169 (424)
Q Consensus       153 ~~~~~~~I~~~~~g~Pl  169 (424)
                      .++....|++.++|...
T Consensus       189 ~~~~l~~I~~~~~gdiR  205 (231)
T d1iqpa2         189 TEEGLQAILYIAEGDMR  205 (231)
T ss_dssp             CHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHcCCCHH
Confidence            35667889999998754

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.48  E-value=7.7e-07  Score=74.58  Aligned_cols=142  Identities=16%  Similarity=0.192  Sum_probs=87.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      .+.|+|++|+|||.|++.+++...  .....+++++      ..++...+...+....        ...+.+.++ .--+
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~dl  100 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYSS------ADDFAQAMVEHLKKGT--------INEFRNMYK-SVDL  100 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEEE------HHHHHHHHHHHHHHTC--------HHHHHHHHH-TCSE
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhc--cCccceEEec------hHHHHHHHHHHHHccc--------hhhHHHHHh-hccc
Confidence            478999999999999999999984  3444566654      3344445544443221        111222222 3458


Q ss_pred             EEEcCCCCcc---hhhhhccC----CCCCCcEEEEEecchhhhc-----------ccCceEEecCCCHHHHHHHHHHHhc
Q 037045           83 LFLDGVSSEI---NFKEIGMH----DDHGRGKVVFACRSREFCW-----------QADGVIHVQQLCQREAKKLFWEVVG  144 (424)
Q Consensus        83 lvlD~~~~~~---~~~~~~~~----~~~~~~~iiittr~~~~~~-----------~~~~~~~l~~l~~~~~~~l~~~~~~  144 (424)
                      |++||++...   .|+...+.    ....+.++|+|++......           .....++++ .+.++..+++++.+.
T Consensus       101 l~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~  179 (213)
T d1l8qa2         101 LLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLK  179 (213)
T ss_dssp             EEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEEC-CCcHHHHHHHHHHHH
Confidence            9999998652   34433121    3456789999998543221           566777775 577777788887774


Q ss_pred             ccCCCCccHHHHHHHHHHhc
Q 037045          145 VHLKKYPDIELVADSIVKEC  164 (424)
Q Consensus       145 ~~~~~~~~~~~~~~~I~~~~  164 (424)
                      ..  .-.-.++++..|++.+
T Consensus       180 ~r--gl~l~~~v~~yl~~~~  197 (213)
T d1l8qa2         180 EF--NLELRKEVIDYLLENT  197 (213)
T ss_dssp             HT--TCCCCHHHHHHHHHHC
T ss_pred             Hc--CCCCCHHHHHHHHHhc
Confidence            43  1222345666677665

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=2.3e-06  Score=71.33  Aligned_cols=153  Identities=10%  Similarity=0.054  Sum_probs=87.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc---------cccChhHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA---------KELNNDLRADIIS   73 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~~~~~l~   73 (424)
                      .+.++|+.|+||||+|+.+++.........   +-.++..    .-.+.+........         .....++ +..+.
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~---~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~-ir~l~   97 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRYLLCQQPQG---HKSCGHC----RGCQLMQAGTHPDYYTLAPEKGKNTLGVDA-VREVT   97 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCSSCBT---TBCCSCS----HHHHHHHHTCCTTEEEECCCTTCSSBCHHH-HHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHhcccccccc---ccccccc----chhhhhhhccccccchhhhhhcccccccch-hhHHh
Confidence            478899999999999999998763111000   0000000    01111111111110         0111111 22222


Q ss_pred             HHh-----ccCcEEEEEcCCCCcch--hhhh--ccCCCCCCcEEEEEecchh-hhc---ccCceEEecCCCHHHHHHHHH
Q 037045           74 KEL-----NDRSYVLFLDGVSSEIN--FKEI--GMHDDHGRGKVVFACRSRE-FCW---QADGVIHVQQLCQREAKKLFW  140 (424)
Q Consensus        74 ~~l-----~~~~~LlvlD~~~~~~~--~~~~--~~~~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l~~~~~~~l~~  140 (424)
                      +.+     .+++-++|+|+++....  ...+  .+-....++.+|+||++.. +.+   +....+.+.+++.++..+.+.
T Consensus        98 ~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i~~~~~~~~~~~~~L~  177 (207)
T d1a5ta2          98 EKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLS  177 (207)
T ss_dssp             HHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred             hhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEEecCCCCHHHHHHHHH
Confidence            322     23567999999998743  2222  1123345677777777654 333   778899999999999999887


Q ss_pred             HHhcccCCCCccHHHHHHHHHHhcCCchHH
Q 037045          141 EVVGVHLKKYPDIELVADSIVKECGGMPYM  170 (424)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~I~~~~~g~Pla  170 (424)
                      +...-       .++.+..|++.++|.|..
T Consensus       178 ~~~~~-------~~~~~~~i~~~s~Gs~r~  200 (207)
T d1a5ta2         178 REVTM-------SQDALLAALRLSAGSPGA  200 (207)
T ss_dssp             HHCCC-------CHHHHHHHHHHTTTCHHH
T ss_pred             HcCCC-------CHHHHHHHHHHcCCCHHH
Confidence            65421       145678899999998743

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=2.2e-06  Score=74.08  Aligned_cols=145  Identities=12%  Similarity=0.093  Sum_probs=84.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +-|.++|++|+|||++|+.+++...  .+   ++.++.+.-              ...............+...-..+++
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~~--~~---~~~i~~~~l--------------~~~~~g~~~~~l~~~f~~A~~~~p~   99 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANETG--AF---FFLINGPEI--------------MSKLAGESESNLRKAFEEAEKNAPA   99 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTT--CE---EEEECHHHH--------------TTSCTTHHHHHHHHHHHHHHHTCSE
T ss_pred             ceeEEecCCCCCchHHHHHHHHHhC--Ce---EEEEEchhh--------------cccccccHHHHHHHHHHHHHhcCCe
Confidence            3478999999999999999999872  22   233332210              0000111111112222222345789


Q ss_pred             EEEEcCCCCcch-------------hhhh----ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHHHH
Q 037045           82 VLFLDGVSSEIN-------------FKEI----GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREAKK  137 (424)
Q Consensus        82 LlvlD~~~~~~~-------------~~~~----~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~~~  137 (424)
                      +|++||++....             ...+    .......+.-||.||.......       .-+..++++..+.++..+
T Consensus       100 il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~  179 (258)
T d1e32a2         100 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE  179 (258)
T ss_dssp             EEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHH
T ss_pred             EEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCccccchhhhhcccccceeECCCCCHHHHHH
Confidence            999999987410             1111    1112333334555776544333       367889999999999999


Q ss_pred             HHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          138 LFWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      +|+...........   .....|++.+.|+-
T Consensus       180 il~~~l~~~~~~~~---~~~~~la~~t~G~s  207 (258)
T d1e32a2         180 ILQIHTKNMKLADD---VDLEQVANETHGHV  207 (258)
T ss_dssp             HHHHTTTTSCBCTT---CCHHHHHHHCTTCC
T ss_pred             HhhhhccCcccccc---cchhhhhhcccCCC
Confidence            99887754321111   12467889998864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.37  E-value=2.4e-06  Score=73.16  Aligned_cols=144  Identities=13%  Similarity=0.119  Sum_probs=79.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -|.++|++|+|||++|+.+++...  ..   .+.++.+.      +..        ...........+.+...-...+++
T Consensus        44 giLl~GppGtGKT~la~aia~~~~--~~---~~~i~~~~------l~~--------~~~g~~~~~l~~~f~~a~~~~p~I  104 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEAR--VP---FITASGSD------FVE--------MFVGVGAARVRDLFETAKRHAPCI  104 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT--CC---EEEEEHHH------HHH--------SCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred             eEEEecCCCCChhHHHHHHHHHcC--CC---EEEEEhHH------hhh--------ccccHHHHHHHHHHHHHHHcCCEE
Confidence            478999999999999999999772  22   23343221      111        000111111112222222356899


Q ss_pred             EEEcCCCCcc----------------hhhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHHH
Q 037045           83 LFLDGVSSEI----------------NFKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQREA  135 (424)
Q Consensus        83 lvlD~~~~~~----------------~~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~~  135 (424)
                      |+|||++...                .+..+  .+-  ....+.-+|-||.......       .-...+++...+.++.
T Consensus       105 i~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR  184 (247)
T d1ixza_         105 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR  184 (247)
T ss_dssp             EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred             EEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHH
Confidence            9999986320                12222  011  1222223333665433222       2456899999999999


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      .++++...........   .....+++.+.|+.
T Consensus       185 ~~il~~~l~~~~~~~~---~~~~~la~~t~g~s  214 (247)
T d1ixza_         185 EQILRIHARGKPLAED---VDLALLAKRTPGFV  214 (247)
T ss_dssp             HHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred             HHHHHHHhcccCCccc---cCHHHHHHHCCCCC
Confidence            9999988865421111   12456788888864

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=3.8e-06  Score=72.23  Aligned_cols=145  Identities=13%  Similarity=0.119  Sum_probs=82.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +-+.++|++|+|||++|+.+++...  ..   .+.++.+.-.+.              ............+...-+..++
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~~~--~~---~~~i~~~~l~~~--------------~~g~~~~~l~~~f~~A~~~~P~  106 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGEAK--VP---FFTISGSDFVEM--------------FVGVGASRVRDMFEQAKKAAPC  106 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT--CC---EEEECSCSSTTS--------------CCCCCHHHHHHHHHHHHTTCSE
T ss_pred             CeEEeeCCCCCCccHHHHHHHHHcC--CC---EEEEEhHHhhhc--------------chhHHHHHHHHHHHHHHHcCCE
Confidence            3478999999999999999999873  22   233343322110              0111112222222233345689


Q ss_pred             EEEEcCCCCc------------ch----hhhh----ccCCCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHH
Q 037045           82 VLFLDGVSSE------------IN----FKEI----GMHDDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQRE  134 (424)
Q Consensus        82 LlvlD~~~~~------------~~----~~~~----~~~~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~  134 (424)
                      +|+|||++..            ..    +..+    .-.....+.-+|.||.......       .-+..+++...+.++
T Consensus       107 il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~  186 (256)
T d1lv7a_         107 IIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG  186 (256)
T ss_dssp             EEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred             EEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHH
Confidence            9999998642            00    1122    0002223334444666533332       246789999999999


Q ss_pred             HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      ..++++....+.....   +.....+++.+.|+.
T Consensus       187 R~~il~~~l~~~~~~~---~~~~~~la~~t~G~s  217 (256)
T d1lv7a_         187 REQILKVHMRRVPLAP---DIDAAIIARGTPGFS  217 (256)
T ss_dssp             HHHHHHHHHTTSCBCT---TCCHHHHHHTCTTCC
T ss_pred             HHHHHHHhccCCCcCc---ccCHHHHHHhCCCCC
Confidence            9999988875542121   113456888888864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=3.5e-06  Score=72.48  Aligned_cols=127  Identities=20%  Similarity=0.204  Sum_probs=79.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCC---C-CceEEE-EEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-c
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESR---R-FDIIFW-ENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-N   77 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~---~-f~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~   77 (424)
                      +.++|++|+|||+++..++++....+   . .+..+| ++++.-             +.........++....+.+.+ .
T Consensus        42 ~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~l-------------iag~~~~g~~e~r~~~i~~~~~~  108 (268)
T d1r6bx2          42 PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL-------------LAGTKYRGDFEKRFKALLKQLEQ  108 (268)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------------CCCCCSSCHHHHHHHHHHHHSS
T ss_pred             cEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechH-------------hccCccchhHHHHHHHHHHHhhc
Confidence            57999999999999999998864321   1 233444 332221             111111222333333333344 3


Q ss_pred             cCcEEEEEcCCCCcc----------hhhhhccCCCCC-CcEEEEEecchhhhc---------ccCceEEecCCCHHHHHH
Q 037045           78 DRSYVLFLDGVSSEI----------NFKEIGMHDDHG-RGKVVFACRSREFCW---------QADGVIHVQQLCQREAKK  137 (424)
Q Consensus        78 ~~~~LlvlD~~~~~~----------~~~~~~~~~~~~-~~~iiittr~~~~~~---------~~~~~~~l~~l~~~~~~~  137 (424)
                      ..++++++|+++...          +...+..|.-.. .-++|-+|....+..         ..+..+.+++.+.+++.+
T Consensus       109 ~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT~eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~  188 (268)
T d1r6bx2         109 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQ  188 (268)
T ss_dssp             SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHH
T ss_pred             cCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCCCCeEEEeCCHHHHHHHHhhcHHHHhhhcccccCCCCHHHHHH
Confidence            467999999987651          344443443333 348888888777655         667889999999999999


Q ss_pred             HHHHHh
Q 037045          138 LFWEVV  143 (424)
Q Consensus       138 l~~~~~  143 (424)
                      ++....
T Consensus       189 IL~~~~  194 (268)
T d1r6bx2         189 IINGLK  194 (268)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            997654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.31  E-value=1.9e-06  Score=74.30  Aligned_cols=157  Identities=15%  Similarity=0.157  Sum_probs=87.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +.+.++|++|+||||+|+.+++...    + .+++++.+...+...+...+-..+...........  .........+..
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  125 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKH--NEEAQNLNGKHF  125 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC------CCSSTTSE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH----h-hhhccccccchhhHHHHHHHHHHhhcchhhhhhhh--hhhcccccccce
Confidence            4689999999999999999999762    1 24566666555544333222111111111111110  001111234677


Q ss_pred             EEEEcCCCCcch-----hhhh-ccCCCCCCcEEEEEec--chhhh-c--ccCceEEecCCCHHHHHHHHHHHhcccCCCC
Q 037045           82 VLFLDGVSSEIN-----FKEI-GMHDDHGRGKVVFACR--SREFC-W--QADGVIHVQQLCQREAKKLFWEVVGVHLKKY  150 (424)
Q Consensus        82 LlvlD~~~~~~~-----~~~~-~~~~~~~~~~iiittr--~~~~~-~--~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~  150 (424)
                      ++++|+++....     +..+ .... .....+++|+.  ..... .  .....+++.+.+.++-.+.+.+....+...-
T Consensus       126 vi~ide~~~~~~~~~~~~~~~~~~~~-~~~~~ii~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i  204 (253)
T d1sxja2         126 VIIMDEVDGMSGGDRGGVGQLAQFCR-KTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL  204 (253)
T ss_dssp             EEEECSGGGCCTTSTTHHHHHHHHHH-HCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC
T ss_pred             EEEeeeccccccchhhhhHHHhhhhc-ccccccccccccccccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCC
Confidence            899999876421     1121 1111 11223444332  22122 2  6678999999999999999988775432111


Q ss_pred             ccHHHHHHHHHHhcCCch
Q 037045          151 PDIELVADSIVKECGGMP  168 (424)
Q Consensus       151 ~~~~~~~~~I~~~~~g~P  168 (424)
                        .++...+|++.++|..
T Consensus       205 --~~~~l~~i~~~s~GDi  220 (253)
T d1sxja2         205 --DPNVIDRLIQTTRGDI  220 (253)
T ss_dssp             --CTTHHHHHHHHTTTCH
T ss_pred             --CHHHHHHHHHhCCCcH
Confidence              1235678999999976

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.25  E-value=4.7e-05  Score=64.64  Aligned_cols=142  Identities=18%  Similarity=0.187  Sum_probs=83.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYV   82 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L   82 (424)
                      -+.++||+|+||||+|+.+++...  ..   ..+++.+...........                    +...+ +.+.+
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~--~~---~~~~~~~~~~~~~~~~~~--------------------~~~~~-~~~~i   90 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELG--VN---LRVTSGPAIEKPGDLAAI--------------------LANSL-EEGDI   90 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT--CC---EEEEETTTCCSHHHHHHH--------------------HHTTC-CTTCE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC--CC---eEeccCCccccchhhHHH--------------------HHhhc-cCCCe
Confidence            467899999999999999999873  22   234443333222221111                    11111 23445


Q ss_pred             EEEcCCCCcch---------hhhh--c-----------cCCCCCCcEEEEEecc-hhhhc----ccCceEEecCCCHHHH
Q 037045           83 LFLDGVSSEIN---------FKEI--G-----------MHDDHGRGKVVFACRS-REFCW----QADGVIHVQQLCQREA  135 (424)
Q Consensus        83 lvlD~~~~~~~---------~~~~--~-----------~~~~~~~~~iiittr~-~~~~~----~~~~~~~l~~l~~~~~  135 (424)
                      +++|+++....         ++..  .           .....++..++.+|.+ .....    .....+.+...+.++.
T Consensus        91 ~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  170 (239)
T d1ixsb2          91 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEEL  170 (239)
T ss_dssp             EEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHH
T ss_pred             eeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEeeccCcccccchhhcccceeeEeeccChhhh
Confidence            66787765411         1110  0           0011233445544433 22222    6678889999999999


Q ss_pred             HHHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHH
Q 037045          136 KKLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLK  172 (424)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~  172 (424)
                      .+++.+......  .....+....|++.+.|.+....
T Consensus       171 ~~i~~~~~~~~~--i~~~~~~l~~ia~~s~gd~R~a~  205 (239)
T d1ixsb2         171 AQGVMRDARLLG--VRITEEAALEIGRRSRGTMRVAK  205 (239)
T ss_dssp             HHHHHHHHGGGC--CCBCHHHHHHHHHHTTSSHHHHH
T ss_pred             hHHHHHHHHHhC--CccchHHHHHHHHHcCCCHHHHH
Confidence            999888776552  23335678899999999875543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=3.2e-06  Score=73.31  Aligned_cols=145  Identities=15%  Similarity=0.160  Sum_probs=79.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSY   81 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~   81 (424)
                      +-|.++|++|+|||+||+.+++...  .+|   +.++.      .++.        ..............+...-...++
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~~--~~~---~~~~~------~~l~--------~~~~~~~~~~l~~~f~~A~~~~p~  102 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANECQ--ANF---ISIKG------PELL--------TMWFGESEANVREIFDKARQAAPC  102 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHTT--CEE---EEECH------HHHH--------TSCTTTHHHHHHHHHHHHHHTCSE
T ss_pred             CeEEEECCCCCcchhHHHHHHHHhC--CcE---EEEEH------HHhh--------hccccchHHHHHHHHHHHHhcCCc
Confidence            3578999999999999999999883  222   22221      1111        000111111112222222235689


Q ss_pred             EEEEcCCCCcch----------------hhhh--ccC--CCCCCcEEEEEecchhhhc-------ccCceEEecCCCHHH
Q 037045           82 VLFLDGVSSEIN----------------FKEI--GMH--DDHGRGKVVFACRSREFCW-------QADGVIHVQQLCQRE  134 (424)
Q Consensus        82 LlvlD~~~~~~~----------------~~~~--~~~--~~~~~~~iiittr~~~~~~-------~~~~~~~l~~l~~~~  134 (424)
                      +++|||++....                ...+  .+-  ....+--+|.||.......       .-...+++...+.++
T Consensus       103 il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~  182 (265)
T d1r7ra3         103 VLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS  182 (265)
T ss_dssp             EEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHH
T ss_pred             ceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHH
Confidence            999999985310                1122  111  1223334556666544332       345688999999999


Q ss_pred             HHHHHHHHhcccCCCCccHHHHHHHHHHhcCCch
Q 037045          135 AKKLFWEVVGVHLKKYPDIELVADSIVKECGGMP  168 (424)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~P  168 (424)
                      -.++|+....+......   ....+|++.+.|+-
T Consensus       183 R~~il~~~l~~~~~~~~---~~l~~la~~t~g~s  213 (265)
T d1r7ra3         183 RVAILKANLRKSPVAKD---VDLEFLAKMTNGFS  213 (265)
T ss_dssp             HHHHHHHHTTCC----C---CCCHHHHHHHCSSC
T ss_pred             HHHHHHHHhccCCchhh---hhHHHHHhcCCCCC
Confidence            99999877654311111   12356777888765

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.17  E-value=6.1e-05  Score=63.85  Aligned_cols=141  Identities=17%  Similarity=0.189  Sum_probs=82.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL   83 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll   83 (424)
                      +.++||+|+||||+|+.+++...  ..|   ..++........++.. +                   +.  ...++..+
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~~--~~~---~~~~~~~~~~~~~~~~-~-------------------~~--~~~~~~~~   90 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASELQ--TNI---HVTSGPVLVKQGDMAA-I-------------------LT--SLERGDVL   90 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHT--CCE---EEEETTTCCSHHHHHH-H-------------------HH--HCCTTCEE
T ss_pred             EEEECCCCCcHHHHHHHHHhccC--CCc---ccccCcccccHHHHHH-H-------------------HH--hhccCCch
Confidence            67999999999999999999873  222   2333333322222211 1                   11  12345666


Q ss_pred             EEcCCCCcch---------hhhhc--c-----------CCCCCCcEEEEEecchhhhc-----ccCceEEecCCCHHHHH
Q 037045           84 FLDGVSSEIN---------FKEIG--M-----------HDDHGRGKVVFACRSREFCW-----QADGVIHVQQLCQREAK  136 (424)
Q Consensus        84 vlD~~~~~~~---------~~~~~--~-----------~~~~~~~~iiittr~~~~~~-----~~~~~~~l~~l~~~~~~  136 (424)
                      ++|.++....         ++...  .           ......+.+|.+|.......     .....+.++..+.++..
T Consensus        91 ~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  170 (238)
T d1in4a2          91 FIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELK  170 (238)
T ss_dssp             EEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHH
T ss_pred             HHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCCCeEEEEecCCCccccccceeeeeEEEEecCCCHHHHH
Confidence            7777665421         11100  0           01123445555555544333     44456789999999999


Q ss_pred             HHHHHHhcccCCCCccHHHHHHHHHHhcCCchHHHHH
Q 037045          137 KLFWEVVGVHLKKYPDIELVADSIVKECGGMPYMLKL  173 (424)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~I~~~~~g~Plai~~  173 (424)
                      .++.......  .....++.+..|++.+.|.+..+..
T Consensus       171 ~~l~~~~~~~--~~~~~~~~l~~i~~~s~gd~R~ai~  205 (238)
T d1in4a2         171 EIIKRAASLM--DVEIEDAAAEMIAKRSRGTPRIAIR  205 (238)
T ss_dssp             HHHHHHHHHT--TCCBCHHHHHHHHHTSTTCHHHHHH
T ss_pred             HHHHHhhhhc--cchhhHHHHHHHHHhCCCCHHHHHH
Confidence            9998877654  2233456788999999998765543

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.09  E-value=5.9e-05  Score=64.24  Aligned_cols=23  Identities=22%  Similarity=0.383  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|.++|++|+|||++|+.+++..
T Consensus        42 ~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhcc
Confidence            37899999999999999999987

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=1.9e-06  Score=70.10  Aligned_cols=123  Identities=16%  Similarity=0.154  Sum_probs=70.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCC----CCceEEE-EEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHh-c
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESR----RFDIIFW-ENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKEL-N   77 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~   77 (424)
                      +.++|++|+|||++|..++++....+    -.+..+| ++++.      +.       ....-....++....+.+.+ .
T Consensus        46 ~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~------Li-------Ag~~~rG~~E~rl~~il~e~~~  112 (195)
T d1jbka_          46 PVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV-------AGAKYRGEFEERLKGVLNDLAK  112 (195)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH-------TTTCSHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHH------Hh-------ccCCccHHHHHHHHHHHHHHhc
Confidence            57999999999999999999774321    1234444 44222      10       00001111222232233333 2


Q ss_pred             -cCcEEEEEcCCCCcc---------hhhhhccC-CCCCCcEEEEEecchhhhc---------ccCceEEecCCCHHHHHH
Q 037045           78 -DRSYVLFLDGVSSEI---------NFKEIGMH-DDHGRGKVVFACRSREFCW---------QADGVIHVQQLCQREAKK  137 (424)
Q Consensus        78 -~~~~LlvlD~~~~~~---------~~~~~~~~-~~~~~~~iiittr~~~~~~---------~~~~~~~l~~l~~~~~~~  137 (424)
                       ..+++|++|++....         +...+..| -....-++|.+|....+..         .....+.+++.+.+++.+
T Consensus       113 ~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V~Ep~~e~t~~  192 (195)
T d1jbka_         113 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIA  192 (195)
T ss_dssp             STTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHT
T ss_pred             CCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHHHHHcCHHHHhcCCEeecCCCCHHHHHH
Confidence             348999999987652         22222122 1123347888887665544         667888999999888876


Q ss_pred             HH
Q 037045          138 LF  139 (424)
Q Consensus       138 l~  139 (424)
                      ++
T Consensus       193 IL  194 (195)
T d1jbka_         193 IL  194 (195)
T ss_dssp             TC
T ss_pred             Hh
Confidence            53

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.98  E-value=2.1e-06  Score=77.73  Aligned_cols=152  Identities=17%  Similarity=0.134  Sum_probs=85.2

Q ss_pred             cceeEEEeeccCCCCC---------CC------CcCcccccEEEccCCCCCCCC----hHHhcccCCCcEEEccCCCCCc
Q 037045          263 AHTKRLSLFGFPSSTL---------PD------MPNCCEILTLILEGKRLEKLP----TSFFDYMCHLQLLDLHETNIGC  323 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~---------~~------~~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~  323 (424)
                      ++|+.|++++|.+...         ..      ....+.|+.+.+++|.++...    ...+...+.|+.|++++|.+..
T Consensus       121 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  200 (344)
T d2ca6a1         121 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP  200 (344)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH
T ss_pred             ccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccc
Confidence            5677777776655320         00      023455667777776665322    1223456677888887777632


Q ss_pred             ------CChhhhcccccceeeeccccccccc-----CChhhhccCCCCEEEecCCcCcc-----cchhhhc--CCCCCEe
Q 037045          324 ------LPPSISRLINLNALFLRSSCSLLLQ-----LPAEIGRLQKLEILDVSHTKVQC-----LPSEIGQ--LIELKYL  385 (424)
Q Consensus       324 ------~p~~~~~l~~L~~l~l~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~--l~~L~~l  385 (424)
                            +...+...++|+.|++  +++.++.     +...+..+++|+.|++++|.+..     +-..+..  .+.|++|
T Consensus       201 ~g~~~~l~~~l~~~~~L~~L~L--s~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L  278 (344)
T d2ca6a1         201 EGIEHLLLEGLAYCQELKVLDL--QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL  278 (344)
T ss_dssp             HHHHHHHHTTGGGCTTCCEEEC--CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred             cccccchhhhhcchhhhccccc--ccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEE
Confidence                  1233556677788887  5555532     34455667778888888777663     2112222  3467788


Q ss_pred             eeccccCCCCcccCCCCCCCCcChhhh-hccccCceeecC
Q 037045          386 RVSRVENVGNHTHADAGSGEMISLNII-SKLRLLEELIIE  424 (424)
Q Consensus       386 ~l~~n~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~  424 (424)
                      ++++|.+...        +.......+ .++++|++|+|+
T Consensus       279 ~ls~N~i~~~--------~~~~l~~~l~~~~~~L~~L~l~  310 (344)
T d2ca6a1         279 RLQYNEIELD--------AVRTLKTVIDEKMPDLLFLELN  310 (344)
T ss_dssp             ECCSSCCBHH--------HHHHHHHHHHHHCTTCCEEECT
T ss_pred             ECCCCcCChH--------HHHHHHHHHHccCCCCCEEECC
Confidence            8887754211        001122233 257788888874

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.82  E-value=4.6e-05  Score=69.14  Aligned_cols=127  Identities=16%  Similarity=0.111  Sum_probs=69.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccC----CCCceEE-EEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhcc
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGES----RRFDIIF-WENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELND   78 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~   78 (424)
                      +.++|++|||||+++..++++....    .-.+..+ +++++.-..-..             -....++....+...+..
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~-------------~~g~~e~r~~~i~~~~~~  112 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAK-------------YRGEFEERLKAVIQEVVQ  112 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------------CHHHHHHHHHHHHHT
T ss_pred             CeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccC-------------cchhHHHHHHHHHHHhcc
Confidence            4688999999999998888775321    1224444 444433211000             111222333333333322


Q ss_pred             --CcEEEEEcCCCCcc---------hhhhhccC-CCCCCcEEEEEecchhhhc--------ccCceEEecCCCHHHHHHH
Q 037045           79 --RSYVLFLDGVSSEI---------NFKEIGMH-DDHGRGKVVFACRSREFCW--------QADGVIHVQQLCQREAKKL  138 (424)
Q Consensus        79 --~~~LlvlD~~~~~~---------~~~~~~~~-~~~~~~~iiittr~~~~~~--------~~~~~~~l~~l~~~~~~~l  138 (424)
                        .+++|+||++....         +...+.-| -....-++|-+|....+..        ..+..+.+++.+.+++.++
T Consensus       113 ~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~i  192 (387)
T d1qvra2         113 SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISI  192 (387)
T ss_dssp             TCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHH
T ss_pred             CCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCCcceeeecCHHHHHHhcccHHHHHhcccccCCCCcHHHHHHH
Confidence              47999999998752         22222112 1223347777776655543        7888999999999999999


Q ss_pred             HHHHh
Q 037045          139 FWEVV  143 (424)
Q Consensus       139 ~~~~~  143 (424)
                      +....
T Consensus       193 l~~~~  197 (387)
T d1qvra2         193 LRGLK  197 (387)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            97655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=8.1e-07  Score=71.13  Aligned_cols=64  Identities=22%  Similarity=0.119  Sum_probs=36.0

Q ss_pred             hcccCCCcEEEccCCCCCcCC---hhhhcccccceeeecccccccccCCh-hhhccCCCCEEEecCCcCc
Q 037045          305 FDYMCHLQLLDLHETNIGCLP---PSISRLINLNALFLRSSCSLLLQLPA-EIGRLQKLEILDVSHTKVQ  370 (424)
Q Consensus       305 ~~~~~~L~~L~l~~~~~~~~p---~~~~~l~~L~~l~l~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~  370 (424)
                      ...+++|++|++++|++..++   ..+..+++|+.|++  +++.+.+++. ......+|+.+++++|++.
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~L--s~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL--SGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCC--TTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccc--ccCccccchhhhhhhccccceeecCCCCcC
Confidence            345667777777777664442   33455666666666  5666665544 2222334566666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.75  E-value=1.2e-05  Score=72.47  Aligned_cols=152  Identities=13%  Similarity=0.080  Sum_probs=103.2

Q ss_pred             cceeEEEeeccCCCCCC--C----CcCcccccEEEccCCCCCCCChH-------------HhcccCCCcEEEccCCCCCc
Q 037045          263 AHTKRLSLFGFPSSTLP--D----MPNCCEILTLILEGKRLEKLPTS-------------FFDYMCHLQLLDLHETNIGC  323 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~~--~----~~~~~~L~~L~l~~~~l~~~~~~-------------~~~~~~~L~~L~l~~~~~~~  323 (424)
                      ++|+.|++++|.+....  .    ...+++|+.|++++|.++.....             .....+.|+.++++++.+..
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            78999999999877521  1    24678899999999887531110             11346789999999987732


Q ss_pred             -----CChhhhcccccceeeeccccccccc------CChhhhccCCCCEEEecCCcCcc-----cchhhhcCCCCCEeee
Q 037045          324 -----LPPSISRLINLNALFLRSSCSLLLQ------LPAEIGRLQKLEILDVSHTKVQC-----LPSEIGQLIELKYLRV  387 (424)
Q Consensus       324 -----~p~~~~~l~~L~~l~l~~~~~~~~~------lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~l~l  387 (424)
                           +...+...++|+.+++  ..+.+..      +...+..+++|+.|++++|.++.     +...+..+++|++|++
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L--~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L  250 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKM--VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  250 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEEC--CSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             cccccccchhhhhhhhccccc--ccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence                 2334567788999999  6666643      23346678899999999998752     4445778899999999


Q ss_pred             ccccCCCCcccCCCCCCCCcChhhhhc--cccCceeecC
Q 037045          388 SRVENVGNHTHADAGSGEMISLNIISK--LRLLEELIIE  424 (424)
Q Consensus       388 ~~n~~~~~~~~~~~~~~~~~~~~~l~~--l~~L~~L~l~  424 (424)
                      ++|.+...        +.......+..  .++|++|+|+
T Consensus       251 s~n~i~~~--------g~~~l~~~l~~~~~~~L~~L~ls  281 (344)
T d2ca6a1         251 NDCLLSAR--------GAAAVVDAFSKLENIGLQTLRLQ  281 (344)
T ss_dssp             TTCCCCHH--------HHHHHHHHHHTCSSCCCCEEECC
T ss_pred             hcCccCch--------hhHHHHHHhhhccCCCCCEEECC
Confidence            99975321        01122233333  3568888875

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.65  E-value=0.0001  Score=63.19  Aligned_cols=83  Identities=16%  Similarity=0.181  Sum_probs=60.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      +++-|+|++|+||||+|.+++....  ..-..++|++.-...+.+.     +++++...      .....++..+.+...
T Consensus        61 ~i~e~~G~~~~GKT~l~l~~~~~~q--~~g~~~vyIDtE~~~~~e~-----a~~~GvD~d~il~~~~~~~E~~~~~~~~l  133 (269)
T d1mo6a1          61 RVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDPDY-----AKKLGVDTDSLLVSQPDTGEQALEIADML  133 (269)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHHH--HTTCEEEEEESSCCCCHHH-----HHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred             eeEEEecCCCcHHHHHHHHHHHHHh--cCCCEEEEEECCccCCHHH-----HHHhCCCHHHeEEecCCCHHHHHHHHHHH
Confidence            5788999999999999999998774  3334589999888887664     44555544      445566666666665


Q ss_pred             hccC-cEEEEEcCCCCc
Q 037045           76 LNDR-SYVLFLDGVSSE   91 (424)
Q Consensus        76 l~~~-~~LlvlD~~~~~   91 (424)
                      .+.+ ..|+|+|-+...
T Consensus       134 ~~~~~~~liIiDSi~al  150 (269)
T d1mo6a1         134 IRSGALDIVVIDSVAAL  150 (269)
T ss_dssp             HHTTCEEEEEEECSTTC
T ss_pred             HhcCCCCEEEEeccccc
Confidence            5554 569999987554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=3.5e-06  Score=67.28  Aligned_cols=89  Identities=17%  Similarity=0.099  Sum_probs=60.9

Q ss_pred             hhhcccccceeeecccccccccCC---hhhhccCCCCEEEecCCcCcccchh-hhcCCCCCEeeeccccCCCCcccCCCC
Q 037045          327 SISRLINLNALFLRSSCSLLLQLP---AEIGRLQKLEILDVSHTKVQCLPSE-IGQLIELKYLRVSRVENVGNHTHADAG  402 (424)
Q Consensus       327 ~~~~l~~L~~l~l~~~~~~~~~lp---~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~l~l~~n~~~~~~~~~~~~  402 (424)
                      ....+++|++|++  ++|.+..++   ..+..+++|+.|++++|.+++++.. .....+|+.+++++|++......    
T Consensus        60 ~~~~~~~L~~L~L--s~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~----  133 (162)
T d1koha1          60 IEENIPELLSLNL--SNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD----  133 (162)
T ss_dssp             HHHHCTTCCCCCC--CSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSS----
T ss_pred             HHHhCCCCCEeeC--CCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCccc----
Confidence            3456888999999  888887664   4467788999999999998887652 33445688899999876543211    


Q ss_pred             CCCCcChhhhhccccCceee
Q 037045          403 SGEMISLNIISKLRLLEELI  422 (424)
Q Consensus       403 ~~~~~~~~~l~~l~~L~~L~  422 (424)
                       ........+..+++|++||
T Consensus       134 -~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         134 -QSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             -HHHHHHHHHTTSTTCCEET
T ss_pred             -chhHHHHHHHHCCCCCEEC
Confidence             0112223466778888775

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.59  E-value=0.00011  Score=63.13  Aligned_cols=83  Identities=18%  Similarity=0.157  Sum_probs=61.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      +++-|+|++|+|||++|.+++.....  .-..++|++.-...+++     .++.++...      ...+.++..+.+...
T Consensus        58 ~itei~G~~~sGKT~l~l~~~~~aqk--~g~~v~yiDtE~~~~~~-----~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l  130 (268)
T d1xp8a1          58 RITEIYGPESGGKTTLALAIVAQAQK--AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELL  130 (268)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHh--CCCEEEEEECCccCCHH-----HHHHhCCCchhEEEEcCCCHHHHHHHHHHH
Confidence            57899999999999999999998842  22458999988887774     566666654      455566666666666


Q ss_pred             hccC-cEEEEEcCCCCc
Q 037045           76 LNDR-SYVLFLDGVSSE   91 (424)
Q Consensus        76 l~~~-~~LlvlD~~~~~   91 (424)
                      .++. .-|+|+|-+...
T Consensus       131 ~~~~~~~liIiDSi~al  147 (268)
T d1xp8a1         131 VRSGAIDVVVVDSVAAL  147 (268)
T ss_dssp             HTTTCCSEEEEECTTTC
T ss_pred             HhcCCCcEEEEeccccc
Confidence            5554 458999987543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.4e-05  Score=74.71  Aligned_cols=107  Identities=17%  Similarity=0.146  Sum_probs=73.8

Q ss_pred             cceeEEEeeccCCCCC--CC-CcCcccccEEEccCCCCCCCC----hHHhcccCCCcEEEccCCCCCcCC-hhhh-----
Q 037045          263 AHTKRLSLFGFPSSTL--PD-MPNCCEILTLILEGKRLEKLP----TSFFDYMCHLQLLDLHETNIGCLP-PSIS-----  329 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~~--~~-~~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~p-~~~~-----  329 (424)
                      .+|+.|+++++.++..  .. ...++++++|++++|.++...    ...+..+++|+.|++++|.++... ..+.     
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4688899999998872  22 366888899999999887322    233567888999999988873211 1121     


Q ss_pred             cccccceeeeccccccccc-----CChhhhccCCCCEEEecCCcCcc
Q 037045          330 RLINLNALFLRSSCSLLLQ-----LPAEIGRLQKLEILDVSHTKVQC  371 (424)
Q Consensus       330 ~l~~L~~l~l~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~i~~  371 (424)
                      ...+|++|++  +++.++.     ++..+..+++|+.|++++|.+..
T Consensus        82 ~~~~L~~L~L--~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          82 PSCKIQKLSL--QNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCCCCEEEC--TTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCCEEEC--CCCCccccccccccchhhccccccccccccccchh
Confidence            1246888888  6666653     34556778888888888887763

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.47  E-value=0.00024  Score=58.19  Aligned_cols=57  Identities=19%  Similarity=0.116  Sum_probs=43.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhcccc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLKVNA   60 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~   60 (424)
                      ++|.++|+.|+||||.+.+++.....  +-..+..+....+ ....+-++...+.++.+.
T Consensus         7 ~vi~lvGptGvGKTTTiaKLA~~~~~--~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~   64 (207)
T d1okkd2           7 RVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPV   64 (207)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTHHHHHHHHHHHHTCCE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEEeccccccchhhHhhcccccCceE
Confidence            58999999999999999999988852  2245778887664 355566777777777665

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=0.00019  Score=61.43  Aligned_cols=83  Identities=17%  Similarity=0.171  Sum_probs=57.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccc------cccChhHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNA------KELNNDLRADIISKE   75 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~   75 (424)
                      +++-|+|++|+||||++.+++....  ..-..++|++.-...+...     ++.++...      ...+.++..+.+...
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~~q--~~g~~~vyidtE~~~~~~~-----a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l  127 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL  127 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHH--cCCCEEEEEccccccCHHH-----HHHhCCCHHHEEEecCCCHHHHHHHHHHH
Confidence            5788999999999999999999884  3334589999888777643     45666543      334455555666555


Q ss_pred             hccC-cEEEEEcCCCCc
Q 037045           76 LNDR-SYVLFLDGVSSE   91 (424)
Q Consensus        76 l~~~-~~LlvlD~~~~~   91 (424)
                      .+.. .-|+|+|-+...
T Consensus       128 ~~~~~~~liViDSi~al  144 (263)
T d1u94a1         128 ARSGAVDVIVVDSVAAL  144 (263)
T ss_dssp             HHHTCCSEEEEECGGGC
T ss_pred             HhcCCCCEEEEECcccc
Confidence            5544 458888977443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=3.7e-05  Score=61.32  Aligned_cols=26  Identities=23%  Similarity=0.328  Sum_probs=24.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      ++|++|+|..|+|||||++++.+...
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999999999874

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.41  E-value=3.9e-05  Score=62.17  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++.|+|.|++|+||||||+.+++..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4789999999999999999999987

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.40  E-value=3.6e-05  Score=62.02  Aligned_cols=23  Identities=43%  Similarity=0.707  Sum_probs=21.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhc
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      |+|.|++|+|||||++.++....
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCC
Confidence            89999999999999999998774

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.00037  Score=57.16  Aligned_cols=87  Identities=20%  Similarity=0.185  Sum_probs=54.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-CHHHHHHHHHHHhcccc-cccChhHHHHHHHHH---h
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-NIRDIQEIILERLKVNA-KELNNDLRADIISKE---L   76 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~---l   76 (424)
                      .||.++|+.|+||||.+.+++.... +.. ..+.-+....+. ...+-++...+.++.+. ...+..+....+.+.   .
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~~~~-~~g-~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a   87 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLARQFE-QQG-KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA   87 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHH-TTT-CCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH-HCC-CcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHHH
Confidence            5899999999999999999998884 222 346566555543 23455666777777665 233333333333332   2


Q ss_pred             ccCcE-EEEEcCCCC
Q 037045           77 NDRSY-VLFLDGVSS   90 (424)
Q Consensus        77 ~~~~~-LlvlD~~~~   90 (424)
                      +.+.+ ++++|=...
T Consensus        88 ~~~~~d~ilIDTaGr  102 (211)
T d2qy9a2          88 KARNIDVLIADTAGR  102 (211)
T ss_dssp             HHTTCSEEEECCCCC
T ss_pred             HHcCCCEEEeccCCC
Confidence            23334 788888753

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.35  E-value=6.8e-05  Score=59.62  Aligned_cols=26  Identities=31%  Similarity=0.239  Sum_probs=24.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      |+|++|.|..|+|||||+.++.....
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            79999999999999999999999875

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.35  E-value=0.00023  Score=58.38  Aligned_cols=57  Identities=19%  Similarity=0.147  Sum_probs=41.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-CHHHHHHHHHHHhcccc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-NIRDIQEIILERLKVNA   60 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~   60 (424)
                      +||.++|+.|+||||.+.+++.....  +-..+..+++.... ...+-++...+.++.+.
T Consensus        11 ~vi~lvGp~GvGKTTTiaKLA~~~~~--~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~   68 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPAAREQLRLLGEKVGVPV   68 (207)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEecccccchHHHHHHHHHHhcCCcc
Confidence            57899999999999999999988852  23346677665543 34456666777777655

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=5e-05  Score=60.08  Aligned_cols=24  Identities=38%  Similarity=0.742  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +.|.|.|++|+||||+|+.+++..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999999987

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.30  E-value=6.5e-05  Score=58.66  Aligned_cols=24  Identities=29%  Similarity=0.236  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|.|+|++|+||||+|++++...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            578899999999999999987754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.29  E-value=7.3e-05  Score=60.10  Aligned_cols=35  Identities=17%  Similarity=0.166  Sum_probs=27.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN   38 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~   38 (424)
                      +|.|+|++|+||||+|+.+++... ...++...+++
T Consensus         8 ~I~l~G~~GsGKTTia~~La~~L~-~~~~~~~~~~~   42 (183)
T d1m8pa3           8 TIFLTGYMNSGKDAIARALQVTLN-QQGGRSVSLLL   42 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH-HHCSSCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh-hcCCCchhhhh
Confidence            788999999999999999999874 23445555554

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.28  E-value=0.0025  Score=51.79  Aligned_cols=112  Identities=12%  Similarity=-0.007  Sum_probs=63.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhcc--CCCCceEEEEEecc-CCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhcc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGE--SRRFDIIFWENINT-DGNIRDIQEIILERLKVNAKELNNDLRADIISKELND   78 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~--~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~   78 (424)
                      .-+.++|++|+|||++|..+.+....  ..|.| ++++.-.. .-..+++. ++...+....               ..+
T Consensus        16 ~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D-~~~i~~~~~~I~Id~IR-~i~~~~~~~~---------------~~~   78 (198)
T d2gnoa2          16 ISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDIR-TIKDFLNYSP---------------ELY   78 (198)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHHH-HHHHHHTSCC---------------SSS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHhccccCCCC-EEEEeCCcCCCCHHHHH-HHHHHHhhCc---------------ccC
Confidence            35789999999999999999987642  22333 44444221 22334333 2333333221               124


Q ss_pred             CcEEEEEcCCCCcchhhhhccC----CCCCCcEEEEEecchh-hhc---ccCceEEecCC
Q 037045           79 RSYVLFLDGVSSEINFKEIGMH----DDHGRGKVVFACRSRE-FCW---QADGVIHVQQL  130 (424)
Q Consensus        79 ~~~LlvlD~~~~~~~~~~~~~~----~~~~~~~iiittr~~~-~~~---~~~~~~~l~~l  130 (424)
                      ++-++|+|+++.+..-..-++.    ....++.+|++|.+.. +.+   +....+.+...
T Consensus        79 ~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~p  138 (198)
T d2gnoa2          79 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVP  138 (198)
T ss_dssp             SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred             CCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceEEEeCCCc
Confidence            5569999999987432222121    3334566666665544 333   67777777643

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.28  E-value=6.6e-05  Score=59.91  Aligned_cols=24  Identities=42%  Similarity=0.584  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|.|.|++|+||||+|+.+++..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            579999999999999999999876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=3.4e-05  Score=71.85  Aligned_cols=83  Identities=19%  Similarity=0.203  Sum_probs=42.0

Q ss_pred             cceeEEEeeccCCCC-----CCC-CcCcccccEEEccCCCCCCCChHHhc-----ccCCCcEEEccCCCCCc-----CCh
Q 037045          263 AHTKRLSLFGFPSST-----LPD-MPNCCEILTLILEGKRLEKLPTSFFD-----YMCHLQLLDLHETNIGC-----LPP  326 (424)
Q Consensus       263 ~~l~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~-----~~~~L~~L~l~~~~~~~-----~p~  326 (424)
                      ++++.|++++|.++.     +.. +..+++|+.|++++|.++......+.     ...+|+.|++++|.+..     ++.
T Consensus        27 ~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~  106 (460)
T d1z7xw1          27 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  106 (460)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccc
Confidence            566666666665543     111 24556666666666665422111111     12356666666666522     223


Q ss_pred             hhhcccccceeeecccccccc
Q 037045          327 SISRLINLNALFLRSSCSLLL  347 (424)
Q Consensus       327 ~~~~l~~L~~l~l~~~~~~~~  347 (424)
                      .+..+++|++|++  .++.++
T Consensus       107 ~l~~~~~L~~L~L--~~N~i~  125 (460)
T d1z7xw1         107 TLRTLPTLQELHL--SDNLLG  125 (460)
T ss_dssp             HTTSCTTCCEEEC--CSSBCH
T ss_pred             hhhcccccccccc--ccccch
Confidence            3455566666666  555544

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.25  E-value=0.00053  Score=56.32  Aligned_cols=57  Identities=21%  Similarity=0.124  Sum_probs=42.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-CHHHHHHHHHHHhcccc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-NIRDIQEIILERLKVNA   60 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~   60 (424)
                      .||+++|+.|+||||.+.+++.++..  +-..+..+.+..+. ...+-++...+.++.+.
T Consensus        12 ~vi~lvGptGvGKTTTiAKLAa~~~~--~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~   69 (213)
T d1vmaa2          12 FVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRAAAIEQLKIWGERVGATV   69 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH--CCCceEEEeecccccchhHHHHHHhhhcCccc
Confidence            47899999999999999999988842  23457777776653 34456666777777665

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.20  E-value=0.00014  Score=58.98  Aligned_cols=26  Identities=31%  Similarity=0.456  Sum_probs=24.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      |++|.|.|++|+||||+++.+++...
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999999999884

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.19  E-value=9.1e-05  Score=59.05  Aligned_cols=24  Identities=38%  Similarity=0.472  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ..|+|.|++|+||||+|+.+++..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999987

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=0.00039  Score=56.75  Aligned_cols=25  Identities=32%  Similarity=0.404  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++||+|.|++|+||||+|+.+++.+
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4789999999999999999999977

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0001  Score=59.49  Aligned_cols=25  Identities=32%  Similarity=0.638  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      |.|.|+|++|+|||||+++++....
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            5689999999999999999999884

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.12  E-value=0.00013  Score=58.39  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|.|.|++|+||||+|+.+++..
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            789999999999999999999987

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.10  E-value=0.00082  Score=55.07  Aligned_cols=57  Identities=14%  Similarity=0.052  Sum_probs=36.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC-CHHHHHHHHHHHhcccc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG-NIRDIQEIILERLKVNA   60 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~   60 (424)
                      .||.++|+.|+||||.+.+++..... .. ..+..+.+..+. ...+-++...+.++.+.
T Consensus        13 ~vi~lvGptGvGKTTTiAKLA~~~~~-~g-~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~   70 (211)
T d1j8yf2          13 YVIMLVGVQGTGKATTAGKLAYFYKK-KG-FKVGLVGADVYRPAALEQLQQLGQQIGVPV   70 (211)
T ss_dssp             EEEEEECSCCC----HHHHHHHHHHH-TT-CCEEEEECCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH-CC-CceEEEEeeccccchhHHHHHhccccCcce
Confidence            58899999999999999999988852 22 357777766553 23345556666676655

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.04  E-value=0.00017  Score=58.19  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=23.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      ++|+|.|++|+||||+++.+++...
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999999874

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00017  Score=57.34  Aligned_cols=24  Identities=21%  Similarity=0.463  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +++.|.|++|+||||+|+.+++..
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            588999999999999999999987

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.98  E-value=0.0012  Score=55.61  Aligned_cols=38  Identities=16%  Similarity=0.151  Sum_probs=31.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      +++.|+|++|+|||++|.+++...  ......++|++...
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~~--~~~~~~~~~is~e~   64 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVENA--CANKERAILFAYEE   64 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEESSS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH--HHhccccceeeccC
Confidence            478999999999999999999997  45666788887654

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.95  E-value=0.002  Score=54.81  Aligned_cols=88  Identities=18%  Similarity=0.254  Sum_probs=57.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHhc--------ccc-----cccChhHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERLK--------VNA-----KELNNDLR   68 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~--------~~~-----~~~~~~~~   68 (424)
                      -++|.|.+|+|||+|+.+++.... +.+-+.++++-++.. .+..++.+++.+.--        ...     ...+....
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~~~-~~~~~v~V~~~iGer~~ev~~~~~~~~~~~~~~~~~~~~~tvvv~~~s~~~~~~r  148 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGAR  148 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT-TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHH-hhCCCeEEEEEeccChHHHHHHHHHHHhcCccccccccceEEEEEECCCCCHHHH
Confidence            478999999999999999998753 344567888888875 456677777765311        111     11111111


Q ss_pred             ------HHHHHHHhc---cCcEEEEEcCCCCc
Q 037045           69 ------ADIISKELN---DRSYVLFLDGVSSE   91 (424)
Q Consensus        69 ------~~~l~~~l~---~~~~LlvlD~~~~~   91 (424)
                            .-.+.+.++   ++++|+++|++...
T Consensus       149 ~~~~~~a~~iAEyf~~~~G~~VLv~~Dsltr~  180 (276)
T d2jdid3         149 ARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF  180 (276)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEEEcchhHH
Confidence                  123445553   67999999998553

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00014  Score=59.34  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|.++|++|+||||+|+.+++..
T Consensus        21 vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          21 TVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            78899999999999999999987

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.91  E-value=0.0013  Score=52.18  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|.++|++|+||||+|++++...
T Consensus        15 ~liil~G~pGsGKST~a~~l~~~~   38 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHLVSA   38 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhc
Confidence            479999999999999999987654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.91  E-value=0.00023  Score=57.98  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +|+|.|++|+||||||+.+.+...
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            799999999999999999998874

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.90  E-value=0.00025  Score=58.48  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|.+.|.+|+||||+|+.+.+..
T Consensus        25 ~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          25 LTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            389999999999999999999876

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.86  E-value=0.00022  Score=56.93  Aligned_cols=24  Identities=33%  Similarity=0.396  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|.|.|++|+||||+|+.+++..
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999998765

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.85  E-value=0.00029  Score=56.05  Aligned_cols=23  Identities=35%  Similarity=0.523  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|.|.|++|+||||+|+.+++..
T Consensus         7 ~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           7 NILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHh
Confidence            48899999999999999999976

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.81  E-value=0.00061  Score=58.60  Aligned_cols=39  Identities=26%  Similarity=0.437  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      ||.|+|+|-||+||||+|..++..... ..+ .+.-|++..
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~LA~-~G~-rVllID~D~   39 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGLHA-MGK-TIMVVGCDP   39 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHT-TTC-CEEEEEECT
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHHh-CCC-cEEEEecCC
Confidence            789999999999999999999999852 233 466666643

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.79  E-value=0.00033  Score=57.07  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|+|.|++|+||||+|+.+++..
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            589999999999999999999977

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.76  E-value=0.002  Score=56.27  Aligned_cols=24  Identities=25%  Similarity=0.440  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      ++.++|++|+|||.||+.++....
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHHhc
Confidence            456689999999999999999873

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.75  E-value=0.00036  Score=55.54  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +.|.+.|++|+||||+|+.+++..
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh
Confidence            457789999999999999999988

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.75  E-value=0.00039  Score=54.81  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|++|+||||+++.+++..
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6788999999999999999998

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.72  E-value=0.00042  Score=57.08  Aligned_cols=24  Identities=29%  Similarity=0.320  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +|.++|.+|+||||+|+++++...
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999998774

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.72  E-value=0.00042  Score=54.84  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.+.|++|+||||+++.+++..
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5566999999999999999988

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00045  Score=57.48  Aligned_cols=24  Identities=33%  Similarity=0.544  Sum_probs=23.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +||+|.||+|+||+|+|+.+++++
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999999988

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.69  E-value=0.0013  Score=52.08  Aligned_cols=83  Identities=18%  Similarity=0.098  Sum_probs=41.9

Q ss_pred             cccCCCcEEEccCCCCCc-----CChhhhcccccceeeeccccccccc-----CChhhhccCCCCEEEecCCcCccc---
Q 037045          306 DYMCHLQLLDLHETNIGC-----LPPSISRLINLNALFLRSSCSLLLQ-----LPAEIGRLQKLEILDVSHTKVQCL---  372 (424)
Q Consensus       306 ~~~~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~l~l~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~i~~l---  372 (424)
                      ...+.|+.|++++|.++.     +...+...+.|+.|++  +++.++.     +-..+...+.|+.|++++|++..+   
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L--~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV--ESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC--CSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceee--ehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence            334456666666655521     1122333455666666  4444432     222344456677777776654432   


Q ss_pred             -----chhhhcCCCCCEeeeccc
Q 037045          373 -----PSEIGQLIELKYLRVSRV  390 (424)
Q Consensus       373 -----p~~i~~l~~L~~l~l~~n  390 (424)
                           ...+..-++|+.|+++.+
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHHhCCCccEeeCcCC
Confidence                 223445566777776654

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00048  Score=56.98  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      ||+|.|++|+||||+|+.+.+...
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            799999999999999999998874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.62  E-value=0.0005  Score=55.81  Aligned_cols=24  Identities=29%  Similarity=0.667  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.|+|.||+|+|||||++++++..
T Consensus         1 rpIvl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           1 RPVVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhC
Confidence            458899999999999999999987

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.59  E-value=0.00067  Score=58.23  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +.|.++|++|+||||+|+.++...
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            358899999999999999999987

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.55  E-value=0.00057  Score=55.24  Aligned_cols=24  Identities=38%  Similarity=0.688  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.|+|.|++|+|||||++.+++..
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhC
Confidence            568999999999999999999987

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.54  E-value=0.00065  Score=56.48  Aligned_cols=23  Identities=30%  Similarity=0.521  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|+|.|++|+||||+|+.+++.+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57889999999999999999988

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0017  Score=53.43  Aligned_cols=25  Identities=24%  Similarity=0.214  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+|+|-|+.|+||||+++.+++...
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999884

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00072  Score=54.90  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+|.|.|++|+||||.|+.+++..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999999977

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.49  E-value=0.00075  Score=54.25  Aligned_cols=24  Identities=33%  Similarity=0.632  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|+|.|++|+|||||++.+.++.
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            578999999999999999999886

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00079  Score=53.90  Aligned_cols=24  Identities=29%  Similarity=0.493  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +.|+|.||+|+|||||+++++++.
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            578999999999999999999876

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.46  E-value=0.00081  Score=54.41  Aligned_cols=24  Identities=29%  Similarity=0.588  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |++| |.|++|+||||+|+.+++..
T Consensus         4 ~rii-l~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           4 VRAV-LLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CEEE-EECCTTSSHHHHHHHHHHHH
T ss_pred             cEEE-EECCCCCCHHHHHHHHHHHh
Confidence            4555 68999999999999999977

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.42  E-value=0.0013  Score=57.19  Aligned_cols=40  Identities=25%  Similarity=0.411  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD   42 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~   42 (424)
                      |+.|+|.|-||+||||+|.+++.....  .-..+.-|++...
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~--~G~rVLlID~DpQ   41 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAE--MGKKVMIVGCDPK   41 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEECSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEEecCCC
Confidence            789999999999999999999888742  2234777777554

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.37  E-value=0.00094  Score=54.24  Aligned_cols=24  Identities=33%  Similarity=0.380  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|.|.|++|+||||+|+.+++.+
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999999976

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.36  E-value=0.001  Score=53.31  Aligned_cols=24  Identities=33%  Similarity=0.623  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |++| |.|++|+||||+|+.+++.+
T Consensus         3 mrIv-l~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           3 IRMV-LIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             CEEE-EECCTTSSHHHHHHHHHHHH
T ss_pred             eEEE-EECCCCCCHHHHHHHHHHHh
Confidence            4444 67999999999999999987

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.35  E-value=0.00097  Score=53.41  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.|.|++|+||||+|+.+++.+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999999987

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.32  E-value=0.001  Score=53.29  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|++|+||||+|+.+++.+
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6778999999999999999987

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.32  E-value=0.0015  Score=54.51  Aligned_cols=39  Identities=26%  Similarity=0.288  Sum_probs=32.2

Q ss_pred             CcEEEEE-cCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            1 MKKICIW-GPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         1 ~~vi~I~-G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      ||||+|. |-||+||||+|..++....  ..-..+..|++..
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la--~~g~~VlliD~D~   40 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALA--QLGHDVTIVDADI   40 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHH--hCCCCEEEEeCCC
Confidence            7899999 8899999999999999884  3334688888754

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.28  E-value=0.0011  Score=52.49  Aligned_cols=104  Identities=13%  Similarity=0.053  Sum_probs=73.5

Q ss_pred             cceeEEEeecc-CCCC--CC----CCcCcccccEEEccCCCCCC----CChHHhcccCCCcEEEccCCCCCc-----CCh
Q 037045          263 AHTKRLSLFGF-PSST--LP----DMPNCCEILTLILEGKRLEK----LPTSFFDYMCHLQLLDLHETNIGC-----LPP  326 (424)
Q Consensus       263 ~~l~~L~l~~~-~~~~--~~----~~~~~~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l~~~~~~~-----~p~  326 (424)
                      ++++.|+++++ .+..  +.    .+...++|+.|++++|.++.    .....+...+.|+.|++++|.++.     +-.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            78999999874 4543  11    13567789999999999973    333446667899999999998833     223


Q ss_pred             hhhcccccceeeecccccccccC--------ChhhhccCCCCEEEecCCc
Q 037045          327 SISRLINLNALFLRSSCSLLLQL--------PAEIGRLQKLEILDVSHTK  368 (424)
Q Consensus       327 ~~~~l~~L~~l~l~~~~~~~~~l--------p~~~~~l~~L~~L~l~~~~  368 (424)
                      .+..-++|+.|++  .++....+        ...+...+.|+.|+++.+.
T Consensus        95 aL~~n~sL~~L~l--~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          95 STLVTQSIVEFKA--DNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HTTTTCCCSEEEC--CCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhCCcCCEEEC--CCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            3455577999999  66655443        3344556889999987753

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.28  E-value=0.001  Score=53.79  Aligned_cols=23  Identities=30%  Similarity=0.316  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|.|.|++|+||||+|+.+++..
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999999987

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0053  Score=53.21  Aligned_cols=75  Identities=13%  Similarity=0.061  Sum_probs=43.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhccc---ccccChhHHHHHHHHHhccC
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVN---AKELNNDLRADIISKELNDR   79 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~l~~~l~~~   79 (424)
                      +|+|.|.+|+||||+|+.+.........-..+.-++.....-....+..  +.+...   ...-+.+...+.+.....++
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~~~~~l~~--~~~~~~~g~Pes~D~~~L~~~L~~lk~g~  159 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKE--RGLMKKKGFPESYDMHRLVKFVSDLKSGV  159 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHH--HTCTTCTTSGGGBCHHHHHHHHHHHTTTC
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeECCchHHHH--hcCCccCCchHhhhHHHHHHHHHHHHcCC
Confidence            8999999999999999999998832111223555555544332222211  111111   14455666666666655443

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.23  E-value=0.0012  Score=53.38  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.|.|++|+||||+|+.+++.+
T Consensus         9 IiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           9 AAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHB
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            4577999999999999999976

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.19  E-value=0.0014  Score=52.45  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.|.|++|+||||+|+.+++..
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6688999999999999999987

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.003  Score=54.77  Aligned_cols=44  Identities=20%  Similarity=0.231  Sum_probs=33.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRD   47 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~   47 (424)
                      ++|.+.|-||+||||+|..++.....  .-..+.-|++....++..
T Consensus         9 ~~i~~sGKGGVGKTTvaa~lA~~lA~--~G~rVLlvD~Dp~~~l~~   52 (296)
T d1ihua1           9 PYLFFTGKGGVGKTSISCATAIRLAE--QGKRVLLVSTDPASNVGQ   52 (296)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCTTCCHHH
T ss_pred             eEEEEECCCcChHHHHHHHHHHHHHH--CCCCEEEEeCCCCCCHHH
Confidence            68889999999999999999988842  223477777665555443

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.98  E-value=0.002  Score=56.50  Aligned_cols=24  Identities=46%  Similarity=0.656  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +-+.++||+|+|||.||+.+++..
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhcc
Confidence            346789999999999999999987

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.0023  Score=52.34  Aligned_cols=24  Identities=21%  Similarity=0.425  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|+|.||+|+|||||.+.+.+..
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            478999999999999999999976

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.91  E-value=0.0023  Score=53.80  Aligned_cols=25  Identities=28%  Similarity=0.280  Sum_probs=23.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |++|+|+|..|+||||+|+.+.+..
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999999998754

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0012  Score=55.35  Aligned_cols=25  Identities=36%  Similarity=0.520  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++.|+|-|+.|+||||+++.+.+..
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            5899999999999999999999876

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0025  Score=52.24  Aligned_cols=22  Identities=23%  Similarity=0.572  Sum_probs=19.5

Q ss_pred             Cc-EEEEEcCCCCcHHHHHHHHH
Q 037045            1 MK-KICIWGPLGVGKTTIMENLH   22 (424)
Q Consensus         1 ~~-vi~I~G~~G~GKTtLa~~~~   22 (424)
                      |+ +|+|+|..|+||||+|+.+.
T Consensus         2 mk~iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCcCCHHHHHHHHH
Confidence            56 89999999999999998764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0022  Score=51.19  Aligned_cols=22  Identities=23%  Similarity=0.228  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.|.|++|+||||+|+.+++..
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5578999999999999999987

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.85  E-value=0.0022  Score=51.72  Aligned_cols=21  Identities=38%  Similarity=0.510  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHH   23 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~   23 (424)
                      +|+|+|..|+||||+|+.+-+
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999998743

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.0031  Score=54.22  Aligned_cols=39  Identities=21%  Similarity=0.202  Sum_probs=29.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD   42 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~   42 (424)
                      +||.+.|-||+||||++..++......  -..+.-|++...
T Consensus        21 ~iii~sGKGGVGKTT~a~nLA~~lA~~--G~rVllvD~Dp~   59 (279)
T d1ihua2          21 GLIMLMGKGGVGKTTMAAAIAVRLADM--GFDVHLTTSDPA   59 (279)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEeCCCC
Confidence            688999999999999998888877432  224666665543

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.83  E-value=0.0023  Score=56.16  Aligned_cols=82  Identities=13%  Similarity=0.244  Sum_probs=43.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhc-cCcE
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELN-DRSY   81 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~   81 (424)
                      ++.++|+.|+|||.+|+.+++..-  ..-...+-++.+...+.....+-+    +.+......++ ...+.+.++ ....
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~--~~~~~~~~~~~~~~~~~~~~~~L~----g~~~gyvG~~~-~~~l~~~~~~~p~~  127 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKHAVSRLI----GAPPGYVGYEE-GGQLTEAVRRRPYS  127 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCSSGGGGGC-------------------CHHHHHHHCSSE
T ss_pred             EEEEECCCcchHHHHHHHHHHHhc--CCCcceEEEeccccccchhhhhhc----CCCCCCcCccc-CChHHHHHHhCCCc
Confidence            677889999999999999999862  222334555655543322111101    11110000000 011223332 4578


Q ss_pred             EEEEcCCCCc
Q 037045           82 VLFLDGVSSE   91 (424)
Q Consensus        82 LlvlD~~~~~   91 (424)
                      +++||+++..
T Consensus       128 Vvl~DEieK~  137 (315)
T d1qvra3         128 VILFDEIEKA  137 (315)
T ss_dssp             EEEESSGGGS
T ss_pred             EEEEehHhhc
Confidence            9999999865

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.80  E-value=0.0038  Score=54.77  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=31.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG   43 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~   43 (424)
                      .+|+|.|++|+|||||..++........+--+++-++.+.+.
T Consensus        52 ~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~   93 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTR   93 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGS
T ss_pred             eEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHH
Confidence            479999999999999999999876423333346666655543

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0037  Score=53.41  Aligned_cols=24  Identities=33%  Similarity=0.495  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      -++|.|.+|+|||+|+.++++...
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHHHh
Confidence            478999999999999999998774

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.80  E-value=0.0017  Score=52.68  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|+|-|+.|+||||+++.+.+..
T Consensus        11 ~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          11 TVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEECSTTSCHHHHHHTTGGGT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            79999999999999999998866

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.78  E-value=0.0076  Score=51.54  Aligned_cols=75  Identities=20%  Similarity=0.162  Sum_probs=43.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCC-ceEEEEEeccC-CCHHHHHHHHHHHhccc--------ccccChhHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRF-DIIFWENINTD-GNIRDIQEIILERLKVN--------AKELNNDLRADII   72 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~-~~~~~~~~~i~~~l~~~--------~~~~~~~~~~~~l   72 (424)
                      +|+|.|..|+|||||+..+......+... ..+.-++.... .+.+ -...+.+.....        +...+.+-+.+.+
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t~~-~r~~L~~~~~~~pl~~~RG~PgThD~~ll~~~l  107 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHE-DQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVL  107 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHH-HHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCCCHH-HHHHHhhhccccccceecCCCcchhHHHHHHHH
Confidence            78999999999999999988776322222 23566665553 3322 234455554222        1344445455555


Q ss_pred             HHHhcc
Q 037045           73 SKELND   78 (424)
Q Consensus        73 ~~~l~~   78 (424)
                      ....++
T Consensus       108 ~~l~~~  113 (286)
T d1odfa_         108 NTIFNN  113 (286)
T ss_dssp             HHHTC-
T ss_pred             HHHHhh
Confidence            554433

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=95.74  E-value=0.0058  Score=51.99  Aligned_cols=86  Identities=14%  Similarity=0.185  Sum_probs=50.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC-CCHHHHHHHHHHHh--cccc-----cccChh------HHH
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD-GNIRDIQEIILERL--KVNA-----KELNND------LRA   69 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l--~~~~-----~~~~~~------~~~   69 (424)
                      ++|.|.+|+|||+|+.......  ..+.+.++++-++.. ....++.+++...=  ....     ...+..      ...
T Consensus        70 ~~Ifg~~g~GKt~l~~~~~~~~--~~~~~v~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~tsd~p~~~r~~a~~~a  147 (276)
T d1fx0a3          70 ELIIGDRQTGKTAVATDTILNQ--QGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTG  147 (276)
T ss_dssp             CBEEESSSSSHHHHHHHHHHTC--CTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHH
T ss_pred             EeeccCCCCChHHHHHHHHhhh--cccCceeeeeeecchhHHHHHHHHhhccCCcceeeeecccccCccHHHHHHHHHHH
Confidence            6799999999999999876655  445567788877764 33444554443321  1111     111111      122


Q ss_pred             HHHHHHh--ccCcEEEEEcCCCCc
Q 037045           70 DIISKEL--NDRSYVLFLDGVSSE   91 (424)
Q Consensus        70 ~~l~~~l--~~~~~LlvlD~~~~~   91 (424)
                      -.+.+++  +++++|+++|++...
T Consensus       148 ~tiAEyfrd~G~~Vlll~Dsltr~  171 (276)
T d1fx0a3         148 AALAEYFMYRERHTLIIYDDLSKQ  171 (276)
T ss_dssp             HHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             HHHHHHHHHcCCceeEEeeccHHH
Confidence            2333444  368999999997553

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0077  Score=49.19  Aligned_cols=35  Identities=26%  Similarity=0.280  Sum_probs=26.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWE   37 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv   37 (424)
                      +.|+|-|+.|+||||+++.+.+.... ..+..+.+.
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L~~-~g~~~~~~~   37 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFT   37 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHh-CCCCeEEEe
Confidence            47899999999999999999998752 334444443

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.64  E-value=0.0054  Score=50.01  Aligned_cols=24  Identities=38%  Similarity=0.473  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +|+|-|+.|+||||+++.+.+...
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999874

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.63  E-value=0.0066  Score=51.88  Aligned_cols=76  Identities=11%  Similarity=0.042  Sum_probs=39.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCC--CHHHHHHHHHHH---hccc-----ccccChhHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDG--NIRDIQEIILER---LKVN-----AKELNNDLRADI   71 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~---l~~~-----~~~~~~~~~~~~   71 (424)
                      .||+|.|.+|+||||+++.+.+.... .... ++.+......  +....-..+...   -...     .+..+.+.+.+.
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~-~~v~-~~iI~~Dsfyr~~R~~~~~~~~~~~~~~~~~~~~~~P~A~d~dlL~~~   82 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRR-EGVK-AVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERV   82 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHH-HTCC-EEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhh-cCCC-eEEEeCCCCCccchhhhhhhhhhhhhhhccCCCCCCcccccHHHHHHH
Confidence            58999999999999999999887741 1222 3345544432  333322222221   1111     144555666666


Q ss_pred             HHHHhccC
Q 037045           72 ISKELNDR   79 (424)
Q Consensus        72 l~~~l~~~   79 (424)
                      ++...+++
T Consensus        83 l~~L~~g~   90 (288)
T d1a7ja_          83 FREYGETG   90 (288)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHCCC
Confidence            66655544

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.62  E-value=0.013  Score=49.10  Aligned_cols=48  Identities=17%  Similarity=0.264  Sum_probs=34.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccC----CCCceEEEEEeccCCCHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGES----RRFDIIFWENINTDGNIRDIQ   49 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~   49 (424)
                      +++.|.|++|+|||++|.+++......    .....++|+......+...+.
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIR   88 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHHHH
Confidence            478999999999999999998776321    223457888876666654443

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.0032  Score=55.16  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=27.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTD   42 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~   42 (424)
                      .++.++|+.|+|||.||+.+++...     ...+-++++..
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~-----~~~i~~d~s~~   88 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEY   88 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGC
T ss_pred             eEEEEECCCcchhHHHHHHHHhhcc-----CCeeEeccccc
Confidence            3678899999999999999999762     23455565554

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.0064  Score=50.82  Aligned_cols=45  Identities=9%  Similarity=0.042  Sum_probs=32.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCC----CCceEEEEEeccCCCHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESR----RFDIIFWENINTDGNIR   46 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~   46 (424)
                      +++.|.|++|+||||++.+++.......    .-..++|++.....+..
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   83 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPV   83 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGG
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHH
Confidence            4789999999999999999987653222    22457888876665533

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.59  E-value=0.0053  Score=51.31  Aligned_cols=23  Identities=26%  Similarity=0.431  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ||+|.|+.|+|||||...+.+..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            79999999999999999998876

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.52  E-value=0.031  Score=46.44  Aligned_cols=44  Identities=16%  Similarity=0.089  Sum_probs=31.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccC--------------CCCceEEEEEeccCCCH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGES--------------RRFDIIFWENINTDGNI   45 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~--------------~~f~~~~wv~~~~~~~~   45 (424)
                      +++.|.|++|+|||++|.+++......              .....+.|++.......
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~~~~   92 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRP   92 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHhcCCCceEEeecccchhcCceEEEEEecCCcCH
Confidence            478999999999999999999876421              11234778877655443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.51  E-value=0.0052  Score=48.19  Aligned_cols=105  Identities=9%  Similarity=0.016  Sum_probs=51.7

Q ss_pred             cccccEEEccC-CCCCCC----ChHHhcccCCCcEEEccCCCCCc-----CChhhhcccccceeeecccccccc-----c
Q 037045          284 CCEILTLILEG-KRLEKL----PTSFFDYMCHLQLLDLHETNIGC-----LPPSISRLINLNALFLRSSCSLLL-----Q  348 (424)
Q Consensus       284 ~~~L~~L~l~~-~~l~~~----~~~~~~~~~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~l~l~~~~~~~~-----~  348 (424)
                      .+.|+.|++++ +.++..    ....+...++|+.|++++|.++.     +-..+...+.++.+++  ..+.++     .
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l--~~~~~~~~g~~~   93 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV--ESNFISGSGILA   93 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC--CSSCCCHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhh--ccccccchhHHH
Confidence            45566666654 334311    11113345566666666665521     1123344455666666  444332     1


Q ss_pred             CChhhhccCCCCEEEec--CCcCcc-----cchhhhcCCCCCEeeeccc
Q 037045          349 LPAEIGRLQKLEILDVS--HTKVQC-----LPSEIGQLIELKYLRVSRV  390 (424)
Q Consensus       349 lp~~~~~l~~L~~L~l~--~~~i~~-----lp~~i~~l~~L~~l~l~~n  390 (424)
                      +...+...+.|+.+.+.  +|.+..     +...+...+.|+.|+++.+
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            23345555667665553  334432     3334556677777777654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.47  E-value=0.0051  Score=54.00  Aligned_cols=43  Identities=14%  Similarity=0.126  Sum_probs=28.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN   44 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~   44 (424)
                      .+|+|.|++|+|||||...+......+.+--+++-++-+.+.+
T Consensus        55 ~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~   97 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVT   97 (327)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeee
Confidence            4799999999999999999998774332222344455444444

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.47  E-value=0.003  Score=51.31  Aligned_cols=24  Identities=29%  Similarity=0.650  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++.-.
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhccc
Confidence            378999999999999999998866

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.005  Score=50.99  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.++--.
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCC
Confidence            378999999999999999887654

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.27  E-value=0.0044  Score=51.29  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=24.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEE
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWEN   38 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~   38 (424)
                      .+++|.|++|+|||||.+.++--.   ..-.+.++++
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~gl~---~p~sG~I~~~   65 (230)
T d1l2ta_          32 EFVSIMGPSGSGKSTMLNIIGCLD---KPTEGEVYID   65 (230)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEET
T ss_pred             CEEEEECCCCCCcchhhHhccCCC---CCCcceeEEC
Confidence            378999999999999999777644   2224455543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.0045  Score=51.55  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|++|+|||||++.++--.
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCc
Confidence            378999999999999999998755

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.055  Score=45.73  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+..|+|.+|+||||++.+++....
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3678999999999999999887653

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0053  Score=51.37  Aligned_cols=25  Identities=28%  Similarity=0.514  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +.|+|-|+-|+||||+++.+.+...
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            6899999999999999999999873

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.16  E-value=0.0084  Score=46.17  Aligned_cols=25  Identities=36%  Similarity=0.644  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhcc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGE   27 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~   27 (424)
                      +|.+.|.=|+||||+++.+++...+
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEEEecCCCccHHHHHHHHHhhccc
Confidence            7899999999999999999998854

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.13  E-value=0.0059  Score=47.12  Aligned_cols=22  Identities=36%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.|.|.+|+|||||.+.+..+.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5699999999999999998765

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.11  E-value=0.0059  Score=50.70  Aligned_cols=24  Identities=29%  Similarity=0.452  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.+.--.
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            378999999999999999998655

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.11  E-value=0.0058  Score=50.82  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||++.++--.
T Consensus        30 e~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          30 EFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCC
Confidence            378999999999999999998654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0065  Score=51.13  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|+|+.|+|||||++.+..-.
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhccc
Confidence            478999999999999999988655

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.031  Score=45.38  Aligned_cols=44  Identities=14%  Similarity=0.070  Sum_probs=29.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCC----CCceEEEEEeccCCCH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESR----RFDIIFWENINTDGNI   45 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~   45 (424)
                      +++.|.|++|+|||++|.+++.......    ......++........
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRP   71 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHHHhhccccccceehhhhhhhhhHH
Confidence            4789999999999999999988764322    1223445554444443

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.022  Score=47.59  Aligned_cols=45  Identities=13%  Similarity=0.059  Sum_probs=33.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhcc----CCCCceEEEEEeccCCCHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGE----SRRFDIIFWENINTDGNIR   46 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~~~~~   46 (424)
                      +++.|.|++|+|||++|.+++.....    ...+..+.|++........
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPD   86 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHH
Confidence            47899999999999999999976532    2234557888766665533

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.01  E-value=0.0066  Score=50.39  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +++|.|+.|+|||||.+.++--.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            68899999999999999999765

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.0064  Score=50.77  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      ..++|+|+.|+|||||++.+..-..
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3689999999999999999987653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.89  E-value=0.0068  Score=49.41  Aligned_cols=20  Identities=35%  Similarity=0.491  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLH   22 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~   22 (424)
                      +|+|+|..|+||||+|+.+-
T Consensus         4 iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78999999999999998764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.86  E-value=0.0067  Score=51.20  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||++.+.--.
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCc
Confidence            379999999999999999998644

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.84  E-value=0.0068  Score=50.68  Aligned_cols=24  Identities=38%  Similarity=0.465  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||++.+..-.
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            478999999999999999998654

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.83  E-value=0.0063  Score=51.24  Aligned_cols=24  Identities=29%  Similarity=0.421  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|+|++|+|||||++.++.-.
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhccc
Confidence            479999999999999999998655

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.80  E-value=0.01  Score=49.17  Aligned_cols=37  Identities=32%  Similarity=0.398  Sum_probs=29.1

Q ss_pred             cEEEEE-cCCCCcHHHHHHHHHHhhccCCCCceEEEEEec
Q 037045            2 KKICIW-GPLGVGKTTIMENLHHSIGESRRFDIIFWENIN   40 (424)
Q Consensus         2 ~vi~I~-G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~   40 (424)
                      +||+|+ +-||+||||+|..++....  ..-..++-++..
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la--~~g~~VlliD~D   40 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALG--DRGRKVLAVDGD   40 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHH--hCCCCEEEEeCC
Confidence            589999 7788999999999999985  333457777764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=94.76  E-value=0.0061  Score=50.29  Aligned_cols=24  Identities=33%  Similarity=0.473  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|+|||||.+.+.--.
T Consensus        27 e~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Confidence            378999999999999999998755

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.70  E-value=0.008  Score=46.75  Aligned_cols=23  Identities=43%  Similarity=0.430  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhc
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      |+|+|.+|+|||||.+.+..+..
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~~   30 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGEV   30 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999987653

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.65  E-value=0.05  Score=46.13  Aligned_cols=52  Identities=13%  Similarity=0.146  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLK   57 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~   57 (424)
                      ++.|.|.+|+|||+++.+++.+....... .+++++.-  .+...+...++....
T Consensus        37 l~vi~G~~G~GKT~~~~~la~~~a~~~g~-~v~~~s~E--~~~~~~~~r~~~~~~   88 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQALQWGTAMGK-KVGLAMLE--ESVEETAEDLIGLHN   88 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEESS--SCHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhhhhhccc-ceeEeeec--cchhhHHhHHHHHhh
Confidence            68899999999999999998765322222 45565543  455666666555443

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.65  E-value=0.0081  Score=51.41  Aligned_cols=25  Identities=24%  Similarity=0.415  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+++|.|+.|+|||||++.++--.+
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCc
Confidence            4789999999999999999987664

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.64  E-value=0.0094  Score=48.88  Aligned_cols=25  Identities=36%  Similarity=0.228  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +.|+|-|+.|+||||+++.+.+...
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4799999999999999999999883

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.0085  Score=46.84  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|.+|+|||||++++.+..
T Consensus         7 ivlvG~~~vGKTsli~~~~~~~   28 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEKK   28 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7788999999999999998753

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.63  E-value=0.015  Score=48.19  Aligned_cols=101  Identities=14%  Similarity=0.156  Sum_probs=54.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc-------c------CCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG-------E------SRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLR   68 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~-------~------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~   68 (424)
                      +++.|+|+...||||+.+.++-..-       +      -..||.+ +..++...++..-.-.+..+             
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d~I-~~~~~~~d~~~~~~S~F~~E-------------  107 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRI-FTRVGAADDLASGRSTFMVE-------------  107 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEE-EEEEC-----------CHHH-------------
T ss_pred             eEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceecccchhh-eeEEccCcccccchhHHHHH-------------
Confidence            5789999999999999999886541       0      1234433 33444433322211111111             


Q ss_pred             HHHHHHHh--ccCcEEEEEcCCCCcc-----------hhhhhccCCCCCCcEEEEEecchhhhc
Q 037045           69 ADIISKEL--NDRSYVLFLDGVSSEI-----------NFKEIGMHDDHGRGKVVFACRSREFCW  119 (424)
Q Consensus        69 ~~~l~~~l--~~~~~LlvlD~~~~~~-----------~~~~~~~~~~~~~~~iiittr~~~~~~  119 (424)
                      ...+.+.+  ..++.|+++|++...-           .++.+   ....++.+++||.......
T Consensus       108 ~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l---~~~~~~~~i~tTH~~~l~~  168 (234)
T d1wb9a2         108 MTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENL---ANKIKALTLFATHYFELTQ  168 (234)
T ss_dssp             HHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHH---HHTTCCEEEEECSCGGGGG
T ss_pred             HHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhh---hccccceEEEecchHHHhh
Confidence            11222222  3468899999986531           12222   2335678999998776655

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.0094  Score=46.60  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|+|.|.+|+|||||+.+++.+.
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~~   27 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            37889999999999999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.0093  Score=46.98  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|.+|+|||||+.++.+..
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~   27 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDKR   27 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHhcCC
Confidence            6789999999999999988653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.52  E-value=0.0096  Score=46.39  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.+.|.+|+|||||+.++....
T Consensus         5 v~liG~~~vGKTsLl~~~~~~~   26 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAGR   26 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999998754

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.50  E-value=0.019  Score=48.96  Aligned_cols=88  Identities=13%  Similarity=0.140  Sum_probs=49.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhcc-----CCCC-ceEEEEEeccC-CCHHHHHHHHHHHhcccc-------cccChhHH
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIGE-----SRRF-DIIFWENINTD-GNIRDIQEIILERLKVNA-------KELNNDLR   68 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~~-----~~~f-~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~   68 (424)
                      -++|.|.+|+|||+|+..+......     +..- ..+++.-++.. ....++.+.+...-....       ...+....
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~~~~~~~~~~~~~~~~~v~~~IGer~~E~~e~~~~~~~~~~~~~tvvv~~ts~~~~~~r  149 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQ  149 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHHTHHHHTSSCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHhHHhhccccccccceEEEEeeeCccHHHHHHHHHHhcccccccceEEEEECCCCCHHHH
Confidence            3689999999999999888765421     1111 23566666553 345556665554322111       11111111


Q ss_pred             ------HHHHHHHh--ccCcEEEEEcCCCC
Q 037045           69 ------ADIISKEL--NDRSYVLFLDGVSS   90 (424)
Q Consensus        69 ------~~~l~~~l--~~~~~LlvlD~~~~   90 (424)
                            .-.+.+++  +++++|+++|++..
T Consensus       150 ~~~~~~a~tiAEyfrd~G~~VLll~Dsltr  179 (285)
T d2jdia3         150 YLAPYSGCSMGEYFRDNGKHALIIYDDLSK  179 (285)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcEEEEEcChHH
Confidence                  11222333  46899999999754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.47  E-value=0.011  Score=46.14  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |++.|.+|+|||||+..+.+..
T Consensus         5 v~liG~~~vGKSsLi~rl~~~~   26 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKGI   26 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6799999999999999988643

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.01  Score=46.37  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|+|.|.+|+|||||+.++....
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~~   27 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCENK   27 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            36899999999999999988643

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.39  E-value=0.012  Score=52.41  Aligned_cols=25  Identities=32%  Similarity=0.446  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      +.+.++||+|+|||++|+.+++...
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            4689999999999999999999883

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.0098  Score=46.68  Aligned_cols=22  Identities=23%  Similarity=0.575  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|.+|+|||||+..++...
T Consensus         5 i~viG~~~vGKTsLi~r~~~~~   26 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKGT   26 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6789999999999999988753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.011  Score=46.31  Aligned_cols=22  Identities=27%  Similarity=0.570  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |++.|.+|+|||+|.+.+++..
T Consensus         5 i~lvG~~~vGKTsli~r~~~~~   26 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTKR   26 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6789999999999999999764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.34  E-value=0.0082  Score=47.00  Aligned_cols=106  Identities=12%  Similarity=0.121  Sum_probs=73.1

Q ss_pred             cceeEEEeec-cCCCC--CCC----CcCcccccEEEccCCCCCCC----ChHHhcccCCCcEEEccCCCCCc-----CCh
Q 037045          263 AHTKRLSLFG-FPSST--LPD----MPNCCEILTLILEGKRLEKL----PTSFFDYMCHLQLLDLHETNIGC-----LPP  326 (424)
Q Consensus       263 ~~l~~L~l~~-~~~~~--~~~----~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~~~~~~-----~p~  326 (424)
                      ++|+.|++++ +.++.  +..    +..+++|+.|++++|.++..    ....+...+.++.++++++.+..     +..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            7899999987 44543  111    25678899999999998742    22335567899999999998722     224


Q ss_pred             hhhcccccceeeeccccccccc-----CChhhhccCCCCEEEecCCc
Q 037045          327 SISRLINLNALFLRSSCSLLLQ-----LPAEIGRLQKLEILDVSHTK  368 (424)
Q Consensus       327 ~~~~l~~L~~l~l~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~  368 (424)
                      .+...++|+.+.+.-..+.++.     +...+...+.|+.|++..+.
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            5666788887666213344532     44566778999999998764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.34  E-value=0.0067  Score=50.46  Aligned_cols=24  Identities=38%  Similarity=0.520  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|++|+|||||.+.+.--.
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCc
Confidence            378999999999999999998754

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.33  E-value=0.011  Score=46.15  Aligned_cols=22  Identities=36%  Similarity=0.720  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|.+|+|||||++++.+..
T Consensus         7 i~lvG~~~vGKTsli~rl~~~~   28 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVEDS   28 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999998754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.29  E-value=0.011  Score=46.23  Aligned_cols=21  Identities=33%  Similarity=0.417  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 037045            4 ICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~   24 (424)
                      |++.|.+|+|||||+..+...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999998865

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.011  Score=46.51  Aligned_cols=23  Identities=35%  Similarity=0.663  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|+|.|.+|+|||||++.+.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~~   29 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQGL   29 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            37899999999999999998753

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.20  E-value=0.012  Score=49.13  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|.|||||.+.+.--.
T Consensus        33 ei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          33 QIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            479999999999999999998755

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.012  Score=46.05  Aligned_cols=22  Identities=18%  Similarity=0.404  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|.+|+|||||+..+....
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~~   30 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6889999999999999998654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=94.13  E-value=0.013  Score=48.83  Aligned_cols=25  Identities=32%  Similarity=0.464  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .+++|.|+.|.|||||.+.++--.+
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4789999999999999999987653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.13  E-value=0.013  Score=46.10  Aligned_cols=23  Identities=39%  Similarity=0.602  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|+|.|.+|+|||||+..+....
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~~   26 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVNDK   26 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHcCC
Confidence            37899999999999999988643

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.13  E-value=0.013  Score=46.34  Aligned_cols=24  Identities=33%  Similarity=0.415  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +.|+|.|.+|+|||||++.++...
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999998653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.012  Score=46.31  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|+|.|.+|+|||||++.+.+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~~   30 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQSY   30 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            37899999999999999988654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.11  E-value=0.012  Score=45.93  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |++.|.+|+|||||++.++...
T Consensus         5 i~vvG~~~vGKTSli~~l~~~~   26 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVEDK   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7799999999999999998754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.012  Score=45.93  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|+|.|..|+|||||+..+.+..
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~~   28 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEGQ   28 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            47889999999999999988653

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.08  E-value=0.023  Score=50.41  Aligned_cols=52  Identities=19%  Similarity=0.095  Sum_probs=32.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccC-CCCceEEEEEeccCCCHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGES-RRFDIIFWENINTDGNIRDIQEIIL   53 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~   53 (424)
                      ++..|+|++|+||||++..+....... ..-...+.+...+......+.+.+.
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~  216 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLG  216 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHT
T ss_pred             CeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHH
Confidence            578999999999999987765544211 1223356666666544444444443

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.07  E-value=0.016  Score=44.62  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|+|.|.+|+|||||+..+....
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999988754

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.012  Score=45.68  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|.+|+|||||++.+....
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~~   24 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYDS   24 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999998654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.06  E-value=0.034  Score=50.72  Aligned_cols=48  Identities=25%  Similarity=0.353  Sum_probs=34.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc-------CCCHHHHHHHHHHHh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT-------DGNIRDIQEIILERL   56 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-------~~~~~~~~~~i~~~l   56 (424)
                      |.+.||.|+|||-||+.+++..  .-.|   +-++++.       ..+++++.+.+++.-
T Consensus        52 ILliGPTGvGKTlLAr~LAk~l--~VPF---v~~daT~fTeaGYvG~DVesii~~L~~~a  106 (443)
T d1g41a_          52 ILMIGPTGVGKTEIARRLAKLA--NAPF---IKVEATKFTEVGYVGKEVDSIIRDLTDSA  106 (443)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT--TCCE---EEEEGGGGC----CCCCTHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh--CCCE---EEeecceeeecceeecchhHHHHHHHHHH
Confidence            6789999999999999999977  3343   2333333       246778887776543

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.05  E-value=0.013  Score=45.68  Aligned_cols=22  Identities=27%  Similarity=0.551  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|..|+|||+|+..+....
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~   27 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            7899999999999999998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.014  Score=45.65  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|+|.|.+|+|||||++.+....
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            37889999999999999987654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.02  E-value=0.011  Score=45.97  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|.+|+|||||.+.+....
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHcCCC
Confidence            6799999999999999987654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.014  Score=46.39  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|+|.|.+|+|||||++++.+..
T Consensus         7 KivviG~~~vGKTsli~~~~~~~   29 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTNA   29 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            37899999999999999998764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.98  E-value=0.014  Score=46.02  Aligned_cols=23  Identities=26%  Similarity=0.261  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|+|.|.+|+|||||+..+....
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            47788999999999999988764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.013  Score=46.61  Aligned_cols=21  Identities=33%  Similarity=0.490  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 037045            4 ICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~   24 (424)
                      |+|.|.+|+|||||++.+.+.
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999998864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.96  E-value=0.014  Score=49.17  Aligned_cols=24  Identities=29%  Similarity=0.481  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|.|+.|.|||||++.+.--.
T Consensus        31 ei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHCCC
Confidence            378999999999999999998765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.95  E-value=0.014  Score=45.85  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|.+|+|||||.+.+....
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~~   29 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQSY   29 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7899999999999999988754

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.95  E-value=0.01  Score=49.02  Aligned_cols=25  Identities=28%  Similarity=0.448  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|..|.|.-|+|||||.+++.+..
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhcC
Confidence            4789999999999999999998854

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.90  E-value=0.015  Score=46.71  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHH   23 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~   23 (424)
                      +.|+|.|.+|+|||||.+.+..
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHhcC
Confidence            5699999999999999999985

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.014  Score=45.55  Aligned_cols=22  Identities=27%  Similarity=0.450  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|.+|+|||||+..+....
T Consensus         6 i~viG~~~vGKTsli~~l~~~~   27 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7889999999999999998754

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.014  Score=45.91  Aligned_cols=22  Identities=18%  Similarity=0.419  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |++.|.+|+|||||+..+....
T Consensus         8 I~lvG~~~vGKTsll~~~~~~~   29 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEKK   29 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999987653

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.86  E-value=0.015  Score=45.43  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|..|+|||||+.++....
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~~   27 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999988764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.015  Score=45.72  Aligned_cols=22  Identities=23%  Similarity=0.551  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|..|+|||||+.++....
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~~   28 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRNE   28 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999987753

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.80  E-value=0.018  Score=45.05  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|+|.|.+|+|||||++.+....
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999997543

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.75  E-value=0.017  Score=47.74  Aligned_cols=39  Identities=13%  Similarity=0.008  Sum_probs=26.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEecc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINT   41 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   41 (424)
                      +++.|+|.+|+|||++|.+++.... ...-..++|++...
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~~~~-~~~~~~~~~~s~e~   65 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLYNGI-IEFDEPGVFVTFEE   65 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHH-HhcCCCcccccccC
Confidence            4788999999999999988665432 12223466665543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.74  E-value=0.018  Score=45.89  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.+.|.+|+|||||++++....
T Consensus         5 ivllG~~~vGKTsl~~r~~~~~   26 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKIIH   26 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhCC
Confidence            6899999999999999987665

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.73  E-value=0.018  Score=45.03  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|.+|+|||||++++....
T Consensus         9 i~vvG~~~vGKTsli~~~~~~~   30 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDGA   30 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999987753

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.016  Score=46.17  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|+|.|.+|+|||||+.++++..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~~   33 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYANDA   33 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Confidence            37899999999999999988754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.68  E-value=0.018  Score=46.61  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |-|+|.|.+|+|||||..++....
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998754

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.67  E-value=0.019  Score=46.52  Aligned_cols=24  Identities=33%  Similarity=0.462  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +.|+|.|.+|+|||||...+....
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998753

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.66  E-value=0.013  Score=49.22  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+++|+|+.|+|||||++.+..-.
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcC
Confidence            478999999999999998877544

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.66  E-value=0.019  Score=45.57  Aligned_cols=23  Identities=39%  Similarity=0.609  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|+|.|.+|+|||||+..+.+..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~~   26 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNKK   26 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            37899999999999999998744

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=93.61  E-value=0.018  Score=44.69  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |++.|.+|+|||||+.++....
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~~   26 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASGQ   26 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6788999999999999987654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=93.60  E-value=0.018  Score=44.94  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|+|.|.+|+|||||++.+....
T Consensus         6 KivlvG~~~vGKTsli~~~~~~~   28 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            47899999999999999987644

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=93.55  E-value=0.026  Score=46.03  Aligned_cols=35  Identities=20%  Similarity=0.126  Sum_probs=26.7

Q ss_pred             cEEEEEcCC-CCcHHHHHHHHHHhhccCCCCceEEEEE
Q 037045            2 KKICIWGPL-GVGKTTIMENLHHSIGESRRFDIIFWEN   38 (424)
Q Consensus         2 ~vi~I~G~~-G~GKTtLa~~~~~~~~~~~~f~~~~wv~   38 (424)
                      +.+.|.|-+ |+||||++..++..... ..+. +..++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~-~G~r-Vl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKA-AGYR-TAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHH-TTCC-EEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHH-CCCe-EEEEC
Confidence            568899998 99999999999999852 2333 44444

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.019  Score=45.05  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|.+|+|||||+..+.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~~~   30 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTNK   30 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7899999999999999988753

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.53  E-value=0.1  Score=38.67  Aligned_cols=50  Identities=10%  Similarity=0.010  Sum_probs=32.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLK   57 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~   57 (424)
                      ++..|.++.|+|||+++-.++...      ...+.+.+....-.++..+.+...+.
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~~~------~~~vli~~P~~~l~~q~~~~~~~~~~   58 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAHG   58 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHHTT------TCCEEEEESCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHc------CCcEEEEcChHHHHHHHHHHHHHHhh
Confidence            567889999999999987666433      22355555555445555555555543

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.53  E-value=0.015  Score=48.17  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 037045            2 KKICIWGPLGVGKTTIMENLHH   23 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~   23 (424)
                      .+++|.|+.|.|||||.+.++-
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            3789999999999999998876

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.52  E-value=0.014  Score=46.08  Aligned_cols=23  Identities=30%  Similarity=0.419  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|+|.|.+|+|||||...+....
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999987643

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=93.52  E-value=0.017  Score=45.34  Aligned_cols=23  Identities=35%  Similarity=0.374  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|+|.|.+|+|||||+.++....
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~~   39 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMNE   39 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37799999999999999988653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.52  E-value=0.017  Score=46.35  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|.+|+|||||+.++....
T Consensus         9 ivvvG~~~vGKTsli~~l~~~~   30 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDDT   30 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHhhCC
Confidence            7899999999999999998754

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.45  E-value=0.022  Score=44.62  Aligned_cols=23  Identities=30%  Similarity=0.310  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|.|.|.+|+||||+|..+.++-
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcC
Confidence            47899999999999999988753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.44  E-value=0.021  Score=44.90  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      ..|+|.|.+|+|||||.+.+...
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.37  E-value=0.021  Score=45.71  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|.+.|.+|+|||+|+.++....
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999997664

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.30  E-value=0.022  Score=44.46  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.+.|..|+|||||+..+++..
T Consensus         7 i~lvG~~~vGKTsll~~~~~~~   28 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQKI   28 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5678999999999999998754

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.29  E-value=0.022  Score=44.87  Aligned_cols=22  Identities=32%  Similarity=0.555  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |++.|.+|+|||||++++....
T Consensus        10 i~vvG~~~vGKTsli~~l~~~~   31 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDDT   31 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999987644

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.28  E-value=0.022  Score=45.07  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |++.|..|+|||+|++.+.+..
T Consensus         5 ivliG~~~vGKTsli~r~~~~~   26 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKDC   26 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6789999999999999998864

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.02  Score=45.77  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |++.|.+|+|||+|+..+....
T Consensus         6 vvllG~~~vGKTSli~r~~~~~   27 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTNK   27 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999988754

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.023  Score=44.51  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 037045            4 ICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~   24 (424)
                      |++.|.+|+|||||++.+...
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.19  E-value=0.022  Score=45.72  Aligned_cols=20  Identities=30%  Similarity=0.524  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENLH   22 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~   22 (424)
                      .|.|.|.+|+|||||+.++.
T Consensus         4 KivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47799999999999999984

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.19  E-value=0.02  Score=44.89  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 037045            3 KICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      -|+|.|.+|+|||||..++...
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999988654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.014  Score=45.84  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|.+|+|||||+.++.+..
T Consensus         6 i~vvG~~~vGKTsli~~~~~~~   27 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTGE   27 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC---
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999887653

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.94  E-value=0.027  Score=44.28  Aligned_cols=23  Identities=13%  Similarity=0.375  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|++.|.+|+|||||+..+....
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            37899999999999999988764

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=92.86  E-value=0.025  Score=44.34  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|.|.|++|+||||+|..+.++-
T Consensus        17 gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcC
Confidence            37889999999999999988643

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.80  E-value=0.03  Score=45.76  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +..++.|.+|+|||||...+..+.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchh
Confidence            357889999999999999987654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=92.72  E-value=0.025  Score=43.52  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|.+|+|||||...+....
T Consensus         4 I~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6799999999999999998543

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=92.69  E-value=0.031  Score=43.54  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|.|.|.+|+||||+|..+.++-
T Consensus        17 gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcC
Confidence            37899999999999999988764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.68  E-value=0.022  Score=45.13  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      .-|+|.|.+|+|||||...+...
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999998643

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.58  E-value=0.029  Score=44.41  Aligned_cols=22  Identities=27%  Similarity=0.463  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|..|+|||||+..+....
T Consensus        11 V~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2          11 VAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHTST
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
Confidence            7899999999999999998643

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.54  E-value=0.022  Score=44.90  Aligned_cols=22  Identities=14%  Similarity=0.392  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 037045            3 KICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      =|+|.|.+|+|||||.+.+...
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999998753

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.51  E-value=0.035  Score=45.48  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|.+.|.+|+|||||++++....
T Consensus         8 KilllG~~~vGKTsll~~~~~~~   30 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILH   30 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999986543

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=92.47  E-value=0.016  Score=45.48  Aligned_cols=22  Identities=36%  Similarity=0.397  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.+.|.+|+|||||.+++....
T Consensus        15 IvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          15 ILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6789999999999999987544

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.47  E-value=0.029  Score=44.29  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 037045            3 KICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      -|+|.|.+|+|||||...+...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999999854

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.41  E-value=0.021  Score=44.83  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=8.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhh
Q 037045            4 ICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |+|.|.+|+|||||+..+....
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~~   30 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSEDA   30 (173)
T ss_dssp             EEEECCCCC-------------
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999887643

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.33  E-value=0.056  Score=47.09  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .|.|-|+-|+||||+++.+++...
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEECCccCCHHHHHHHHHHHhc
Confidence            578889999999999999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=92.08  E-value=0.024  Score=44.78  Aligned_cols=22  Identities=45%  Similarity=0.578  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 037045            3 KICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      -|++.|.+|+|||||.+++...
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3679999999999999988644

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=92.01  E-value=0.024  Score=49.84  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 037045            4 ICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~   24 (424)
                      |.|.|++|+|||+||+.+..-
T Consensus        31 vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh
Confidence            678999999999999999864

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.67  E-value=0.12  Score=44.49  Aligned_cols=53  Identities=19%  Similarity=0.214  Sum_probs=29.7

Q ss_pred             EEEEEcCCCCcHHHHHHH-HHHhhccC-CCCceEEEEEeccCCCHHHHHHHHHHHh
Q 037045            3 KICIWGPLGVGKTTIMEN-LHHSIGES-RRFDIIFWENINTDGNIRDIQEIILERL   56 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~-~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l   56 (424)
                      .+.|.|.+|+||||.+.+ +++-.... ...+.++.+..+.. ....+...+....
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~~-aa~~~~~~~~~~~   80 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNK-AAREMRERVQSLL   80 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHH-HHHHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccHH-HHHHHHHHHHhhc
Confidence            367889999999976644 33333211 23345777765553 3334444444433

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.55  E-value=0.19  Score=41.69  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|.|.|+.|+|||++|+.+.+..
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEECCCCcCHHHHHHHHHHhc
Confidence            37899999999999999998765

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=91.28  E-value=0.062  Score=46.77  Aligned_cols=24  Identities=38%  Similarity=0.634  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            3 KICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      .|+|-|.-|+||||+++.+.+...
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            378889999999999999999873

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=90.85  E-value=0.14  Score=43.70  Aligned_cols=40  Identities=18%  Similarity=0.206  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCcHHHHH-HHHHHhhcc-CCCCceEEEEEeccC
Q 037045            3 KICIWGPLGVGKTTIM-ENLHHSIGE-SRRFDIIFWENINTD   42 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa-~~~~~~~~~-~~~f~~~~wv~~~~~   42 (424)
                      .+.|.|.+|+||||.+ ..+.+-... ......+..++.+..
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn~   57 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNK   57 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHH
T ss_pred             CEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCcHH
Confidence            4678899999999765 333332211 223346777776544

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.68  E-value=0.024  Score=43.65  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|++.|.+|+|||||++.+....
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999998654

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=90.58  E-value=0.074  Score=47.06  Aligned_cols=36  Identities=25%  Similarity=0.371  Sum_probs=25.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCC
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGN   44 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~   44 (424)
                      +...||.|||||-||+.+++..  ...   .+-++.+....
T Consensus        71 iLfiGPTGvGKTElAk~LA~~~--~~~---~ir~D~s~~~e  106 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKHL--DIP---IAISDATSLTE  106 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT--TCC---EEEEEGGGCC-
T ss_pred             eeeeCCCCccHHHHHHHHHhhc--ccc---eeehhhhhccc
Confidence            6778999999999999999875  222   34455555433

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=90.18  E-value=0.084  Score=45.83  Aligned_cols=85  Identities=18%  Similarity=0.146  Sum_probs=45.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhhccCCCCceEEEEEeccCCCHHHHHHHHHHHhcccccccChhHHHHHHHHHhccCcEEE
Q 037045            4 ICIWGPLGVGKTTIMENLHHSIGESRRFDIIFWENINTDGNIRDIQEIILERLKVNAKELNNDLRADIISKELNDRSYVL   83 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll   83 (424)
                      |.|.|+.|+||||+.+.++....  . -..++-+.-.....+.. ..   +....  .....-...+.++..++...=.+
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~--~-~~rivtiEd~~El~l~~-~~---~~~~~--~~~~~~~~~~ll~~~lR~~pd~i  239 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIP--K-EERIISIEDTEEIVFKH-HK---NYTQL--FFGGNITSADCLKSCLRMRPDRI  239 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSC--T-TCCEEEEESSCCCCCSS-CS---SEEEE--ECBTTBCHHHHHHHHTTSCCSEE
T ss_pred             EEEEeeccccchHHHHHHhhhcc--c-ccceeeccchhhhhccc-cc---cccee--ccccchhHHHHHHHHhccCCCcc
Confidence            78999999999999999998663  2 12233332111111000 00   00000  11111123445566666666678


Q ss_pred             EEcCCCCcchhhhh
Q 037045           84 FLDGVSSEINFKEI   97 (424)
Q Consensus        84 vlD~~~~~~~~~~~   97 (424)
                      |+..+.+.+.++-+
T Consensus       240 ivgEiR~~ea~~~l  253 (323)
T d1g6oa_         240 ILGELRSSEAYDFY  253 (323)
T ss_dssp             EESCCCSTHHHHHH
T ss_pred             cCCccCchhHHHHH
Confidence            88888776655444

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=90.16  E-value=0.033  Score=45.70  Aligned_cols=24  Identities=25%  Similarity=0.527  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +..++.|.+|+|||||...+..+.
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ceEEEECCCCccHHHHHHhhccHh
Confidence            356788999999999999987654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=90.10  E-value=0.041  Score=43.31  Aligned_cols=22  Identities=18%  Similarity=0.419  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 037045            3 KICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~   24 (424)
                      -|+|.|.+++|||||.+.+...
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999888553

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=90.06  E-value=0.054  Score=47.07  Aligned_cols=23  Identities=39%  Similarity=0.458  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|+|-|+-|+||||+++.+.+..
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC--
T ss_pred             EEEEECCcCCCHHHHHHHHHHHh
Confidence            48889999999999999998765

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=89.49  E-value=0.16  Score=37.35  Aligned_cols=19  Identities=21%  Similarity=0.024  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 037045            3 KICIWGPLGVGKTTIMENL   21 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~   21 (424)
                      .+.|.++.|+|||..|-..
T Consensus         9 ~~il~~~tGsGKT~~~~~~   27 (140)
T d1yksa1           9 TTVLDFHPGAGKTRRFLPQ   27 (140)
T ss_dssp             EEEECCCTTSSTTTTHHHH
T ss_pred             cEEEEcCCCCChhHHHHHH
Confidence            4678899999999766433

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=89.42  E-value=0.093  Score=44.12  Aligned_cols=25  Identities=32%  Similarity=0.517  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +|-|+|.|..|.|||||+..+....
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~~~   26 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLYKT   26 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHHHc
Confidence            4679999999999999999986543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.24  E-value=0.13  Score=43.43  Aligned_cols=25  Identities=32%  Similarity=0.383  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      |=|+|.|..|.|||||+..+.....
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcC
Confidence            5589999999999999999987653

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=88.74  E-value=0.14  Score=41.89  Aligned_cols=24  Identities=25%  Similarity=0.501  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ++|+|.|..+.|||||+..+....
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhc
Confidence            469999999999999999998764

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.52  E-value=0.13  Score=43.09  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      -|+|.|..|+|||||...+..+.
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999999998653

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=86.39  E-value=0.94  Score=40.22  Aligned_cols=25  Identities=28%  Similarity=0.384  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhhc
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSIG   26 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~~   26 (424)
                      ++|.|.|+.|+||||....+.+...
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             ceEEEEcCCCCCccHHHHHHhhhhc
Confidence            4789999999999999999998763

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=86.16  E-value=0.19  Score=39.23  Aligned_cols=20  Identities=35%  Similarity=0.569  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 037045            4 ICIWGPLGVGKTTIMENLHH   23 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~   23 (424)
                      |+|.|..++|||||...+..
T Consensus         8 IaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            89999999999999999985

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=85.06  E-value=0.037  Score=44.28  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      +.+|+|+.|+||||+...+..-.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            34688999999999999998765

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.64  E-value=0.18  Score=42.51  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            1 MKKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         1 ~~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      |.||+|.|+-++|||+|+..++...
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCC
Confidence            4689999999999999999998754

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=84.19  E-value=0.26  Score=39.06  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHhh
Q 037045            2 KKICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         2 ~vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      ..+.++|++++|||++|..+++-.
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHHh
Confidence            358899999999999999888876

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=83.17  E-value=0.37  Score=38.46  Aligned_cols=21  Identities=29%  Similarity=0.340  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 037045            4 ICIWGPLGVGKTTIMENLHHS   24 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~~   24 (424)
                      |+|.|-.+.|||||+.++...
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            789999999999999998654

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=81.90  E-value=0.45  Score=39.74  Aligned_cols=23  Identities=39%  Similarity=0.774  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .+.++|+|+.|||+++..+.+-.
T Consensus       106 ~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         106 TIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            57899999999999999988866

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.68  E-value=0.35  Score=43.13  Aligned_cols=20  Identities=25%  Similarity=0.576  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 037045            4 ICIWGPLGVGKTTIMENLHH   23 (424)
Q Consensus         4 i~I~G~~G~GKTtLa~~~~~   23 (424)
                      |+|.|.+|+|||||...+..
T Consensus        59 Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999974

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.41  E-value=0.55  Score=33.63  Aligned_cols=23  Identities=17%  Similarity=0.231  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhh
Q 037045            3 KICIWGPLGVGKTTIMENLHHSI   25 (424)
Q Consensus         3 vi~I~G~~G~GKTtLa~~~~~~~   25 (424)
                      .|.+.|..|+||+|+|+.+....
T Consensus         8 ~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           8 SIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             EEEECTTCCSCHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            47889999999999999999888