Citrus Sinensis ID: 037046

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
Protein Sequence
MSLADALIKVAMFVLVQVLVYLILSNSSDIFSENKKKKMMKSSSFKTARSVSIRRMLAAISDLPSEAEVSSPSLRGSRLSDEFPISDDKES
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHcccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MSLADALIKVAMFVLVQVLVYLILSNssdifsenkkkkmmksssfktARSVSIRRMLAAIsdlpseaevsspslrgsrlsdefpisddkes
Flexible Loop (DISEMBL)
MSLADALIKVAMFVLVQVLVYLILSNssdifsenkkkkmmksssfktarsVSIRRMLAAisdlpseaevsspslrgsrlsdefpisddkes
Low Complexity Region (SEG)
MSLADALIKVAMFVLVQVLVYLILSNSSDIFSENkkkkmmksssfkTARSVSIRRMLAAISDLPSEAEVSSPSLRGSRLSDEFPISDDKES
Disordered region (IsUnstruct)
****DALIKVAMFVLVQVLVYLILSN*****************************************************************
Disordered Region (DISOPRED)
*****ALIKVAMFVLVQVLVYLILSNSSD*********************VSIRRMLAAISDL****************************
Disordered Region (DISEMBL)
MSLADALIKVAMFVLVQVLVYLILSNSSDIFSE****************SVSIRRMLAAISD*************GSRLSDE*********
Disordered Region (DISPRO)
*SLADALIKVAMFVLVQVLVYLILSN*****************************************************************
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLADALIKVAMFVLVQVLVYLILSNSSDIFSENKKKKMMKSSSFKTARSVSIRRMLAAISDLPSEAEVSSPSLRGSRLSDEFPISDDKES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
225435636	93	PREDICTED: uncharacterized protein LOC10	0.945	0.924	0.604	5e-18
147812098	93	hypothetical protein VITISV_027928 [Viti	0.945	0.924	0.593	1e-17
388500352	81	unknown [Medicago truncatula]	0.714	0.802	0.710	1e-16
225450289	95	PREDICTED: uncharacterized protein LOC10	0.813	0.778	0.620	2e-16
147834810	94	hypothetical protein VITISV_002756 [Viti	0.780	0.755	0.666	6e-16
224052992	88	predicted protein [Populus trichocarpa]	0.912	0.943	0.620	2e-15
297746310	119	unnamed protein product [Vitis vinifera]	0.780	0.596	0.653	3e-15
225435433	94	PREDICTED: uncharacterized protein LOC10	0.780	0.755	0.653	3e-15
224104523	90	predicted protein [Populus trichocarpa]	0.824	0.833	0.602	4e-15
255542255	88	conserved hypothetical protein [Ricinus	0.714	0.738	0.652	2e-14

>gi|225435636|ref|XP_002285657.1| PREDICTED: uncharacterized protein LOC100250058 [Vitis vinifera] gi|147774796|emb|CAN71356.1| hypothetical protein VITISV_002681 [Vitis vinifera] gi|147806360|emb|CAN65332.1| hypothetical protein VITISV_022734 [Vitis vinifera]

 Score = 94.7 bits (234), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 68/91 (74%), Gaps = 5/91 (5%)

Query: 2  SLADALIKVAMFVLVQVLVYLILSNSSDIFSENKKKKMMKSSSFKTARSVSIRRMLAAIS 61
          S+AD LIKV MF +VQ LVYLIL +SSD+FS    KK M+S SFK ARS SIRR+LAAIS
Sbjct: 7  SVADMLIKVVMFAIVQGLVYLILKSSSDVFS----KKNMRSLSFKPARSASIRRILAAIS 62

Query: 62 DLPSEAEVSSPSLRG-SRLSDEFPISDDKES 91
          D P+ +EVSSPSLRG    + E+  +D+ +S
Sbjct: 63 DFPAGSEVSSPSLRGLQSPTGEYDTADEDKS 93

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812098|emb|CAN61524.1| hypothetical protein VITISV_027928 [Vitis vinifera]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 67/91 (73%), Gaps = 5/91 (5%)

Query: 2  SLADALIKVAMFVLVQVLVYLILSNSSDIFSENKKKKMMKSSSFKTARSVSIRRMLAAIS 61
          S+AD LIKV MF +VQ LVYLIL +SSD+FS    KK M+S SFK  RS SIRR+LAAIS
Sbjct: 7  SVADMLIKVVMFAIVQGLVYLILKSSSDVFS----KKNMRSLSFKPTRSASIRRILAAIS 62

Query: 62 DLPSEAEVSSPSLRG-SRLSDEFPISDDKES 91
          D P+ +EVSSPSLRG    + E+  +D+ +S
Sbjct: 63 DFPAGSEVSSPSLRGLQSPTGEYDTADEDKS 93

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500352|gb|AFK38242.1| unknown [Medicago truncatula]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 55/69 (79%), Gaps = 4/69 (5%)

Query: 2  SLADALIKVAMFVLVQVLVYLILSNSSDIFSENKKKKMMKSSSFKTARSVSIRRMLAAIS 61
          SL D L+KVAMFVLVQ LVYLILSNSS+IFS+N K    +S+SFK ARSVSIRRMLA +S
Sbjct: 4  SLGDMLLKVAMFVLVQALVYLILSNSSNIFSKNIK----RSNSFKPARSVSIRRMLAYLS 59

Query: 62 DLPSEAEVS 70
          D P E E S
Sbjct: 60 DFPPEGEPS 68

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450289|ref|XP_002271097.1| PREDICTED: uncharacterized protein LOC100266637 [Vitis vinifera]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/79 (62%), Positives = 60/79 (75%), Gaps = 5/79 (6%)

Query: 2  SLADALIKVAMFVLVQVLVYLILSNSSDIFSENKKKKMMKSSSFKTARSVSIRRMLAAIS 61
          SLAD ++KV MFVLVQ LVYLILS SS+IFS+N K    +S  FK ARSVSIRR+LA ++
Sbjct: 6  SLADMVLKVGMFVLVQALVYLILSKSSNIFSKNPK----RSHRFKPARSVSIRRVLACLA 61

Query: 62 DLPSEAEVS-SPSLRGSRL 79
          DLP   E+S SPS +G +L
Sbjct: 62 DLPPGGELSPSPSPKGPQL 80

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834810|emb|CAN70550.1| hypothetical protein VITISV_002756 [Vitis vinifera]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 58/75 (77%), Gaps = 4/75 (5%)

Query: 2  SLADALIKVAMFVLVQVLVYLILSNSSDIFSENKKKKMMKSSSFKTARSVSIRRMLAAIS 61
          S AD LIKV +F LVQVLV+LIL +SSD+FS+NK    M+S SFK ARS SIRR+LA IS
Sbjct: 7  SAADMLIKVVVFALVQVLVFLILKSSSDVFSKNK----MRSLSFKPARSASIRRILAVIS 62

Query: 62 DLPSEAEVSSPSLRG 76
          DLP+  EVSS S RG
Sbjct: 63 DLPAGGEVSSRSSRG 77

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052992|ref|XP_002297653.1| predicted protein [Populus trichocarpa] gi|222844911|gb|EEE82458.1| predicted protein [Populus trichocarpa]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 62/87 (71%), Gaps = 4/87 (4%)

Query: 2  SLADALIKVAMFVLVQVLVYLILSNSSDIFSENKKKKMMKSSSFKTARSVSIRRMLAAIS 61
          SLA+ LIKVAMFVLVQVLVY ILSNSS+IFS+NK     +S SFK ARS+SIR  L AIS
Sbjct: 6  SLAEILIKVAMFVLVQVLVYAILSNSSNIFSKNKT----RSFSFKPARSLSIRGFLDAIS 61

Query: 62 DLPSEAEVSSPSLRGSRLSDEFPISDD 88
          D+P  +   SP  RGSR   +  I DD
Sbjct: 62 DMPLGSSEPSPLSRGSRSFTQDSIFDD 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746310|emb|CBI16366.3| unnamed protein product [Vitis vinifera]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 57/75 (76%), Gaps = 4/75 (5%)

Query: 2   SLADALIKVAMFVLVQVLVYLILSNSSDIFSENKKKKMMKSSSFKTARSVSIRRMLAAIS 61
           S AD LIKV +F LVQ LV+LIL +SSD+FS+NK    M+S SFK ARS SIRR+LA IS
Sbjct: 32  SAADMLIKVVVFALVQGLVFLILKSSSDVFSKNK----MRSLSFKPARSASIRRILAVIS 87

Query: 62  DLPSEAEVSSPSLRG 76
           DLP+  EVSS S RG
Sbjct: 88  DLPAGGEVSSRSSRG 102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435433|ref|XP_002285414.1| PREDICTED: uncharacterized protein LOC100262174 [Vitis vinifera]

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 57/75 (76%), Gaps = 4/75 (5%)

Query: 2  SLADALIKVAMFVLVQVLVYLILSNSSDIFSENKKKKMMKSSSFKTARSVSIRRMLAAIS 61
          S AD LIKV +F LVQ LV+LIL +SSD+FS+NK    M+S SFK ARS SIRR+LA IS
Sbjct: 7  SAADMLIKVVVFALVQGLVFLILKSSSDVFSKNK----MRSLSFKPARSASIRRILAVIS 62

Query: 62 DLPSEAEVSSPSLRG 76
          DLP+  EVSS S RG
Sbjct: 63 DLPAGGEVSSRSSRG 77

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104523|ref|XP_002313466.1| predicted protein [Populus trichocarpa] gi|222849874|gb|EEE87421.1| predicted protein [Populus trichocarpa]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 59/78 (75%), Gaps = 3/78 (3%)

Query: 2  SLADALIKVAMFVLVQVLVYLILSNSSDIFSENKKKKMMKSSSFKTARSVSIRRMLAAIS 61
          SL D L+KVAMFV+VQ LVYLILS SS+IFS+   K   +SSSFKTARSVSIRR+LA + 
Sbjct: 4  SLGDVLLKVAMFVIVQGLVYLILSKSSNIFSKTNDK---RSSSFKTARSVSIRRILAVLQ 60

Query: 62 DLPSEAEVSSPSLRGSRL 79
          DLP   E+S  S + +++
Sbjct: 61 DLPPGGELSPASSKSTQV 78

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542255|ref|XP_002512191.1| conserved hypothetical protein [Ricinus communis] gi|223548735|gb|EEF50225.1| conserved hypothetical protein [Ricinus communis]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 52/69 (75%), Gaps = 4/69 (5%)

Query: 2  SLADALIKVAMFVLVQVLVYLILSNSSDIFSENKKKKMMKSSSFKTARSVSIRRMLAAIS 61
          SL D L+KVAMF LVQ LVY+ILS SS+IFS   K    +SSSFK ARSVSIRR LAA+ 
Sbjct: 7  SLGDMLLKVAMFALVQALVYIILSKSSNIFSNTVK----RSSSFKPARSVSIRRFLAALQ 62

Query: 62 DLPSEAEVS 70
          DLP+  E+S
Sbjct: 63 DLPASGELS 71

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
TAIR|locus:505006102	89	AT1G05575 "AT1G05575" [Arabido	0.835	0.853	0.443	3.2e-10
TAIR|locus:505006283	95	AT2G31945 "AT2G31945" [Arabido	0.846	0.810	0.45	1.8e-09

TAIR|locus:505006102 AT1G05575 "AT1G05575" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/79 (44%), Positives = 49/79 (62%)

Query:     2 SLADALIKVAMFVLVQVLVYLILSNSSDIFSENXXXXXXXXXXXXTARSVSIRRMLAAIS 61
             S    L+KV++F L+Q LVYLILS SS +FS +            +ARS+SIRR+LA + 
Sbjct:     4 SFEGMLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFR--SARSISIRRILAVLQ 61

Query:    62 DLPSEAEVSSPSLRGSRLS 80
             D+P+  E+S PS  G  L+
Sbjct:    62 DMPAGGEMS-PSAMGPSLA 79

GO:0003674 "molecular_function" evidence=ND

GO:0009061 "anaerobic respiration" evidence=IEP;IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:505006283 AT2G31945 "AT2G31945" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 36/80 (45%), Positives = 48/80 (60%)

Query:     3 LADALIKVAMFVLVQVLVYLILSNSSDIFSENXXXXXXXXXXXXTARSVSIRRMLAAISD 62
             L   L+KVA+F LVQ LVYLIL  SS +F+ +              RSVSIRR+LAA+ D
Sbjct:     5 LGTMLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFR--PMRSVSIRRILAALQD 62

Query:    63 LPSEAEVSSPSLRGSRLSDE 82
             +P+  ++S PS  GS  S +
Sbjct:    63 IPAGDDMS-PSSNGSSSSSQ 81


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.128   0.322    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       91        79   0.00091  102 3  10 22  0.38    29
                                                     29  0.39    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  462 (49 KB)
  Total size of DFA:  87 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.20u 0.11s 10.31t   Elapsed:  00:00:01
  Total cpu time:  10.20u 0.11s 10.31t   Elapsed:  00:00:01
  Start:  Mon May 20 20:45:07 2013   End:  Mon May 20 20:45:08 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024728001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (90 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	91
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 8e-06
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 15/83 (18%)

Query: 8   IKVAMFVLVQVLVYLILSNSSDIFSENKKKKMMKSSSFKTARSVSIRRMLAAISDLPSEA 67
            +V  F+      ++ L + S   + ++ K ++        + +  R       DLP E 
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-------LKYLDCR-----PQDLPREV 322

Query: 68  EVSSP---SLRGSRLSDEFPISD 87
             ++P   S+    + D     D
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWD 345

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00