Citrus Sinensis ID: 037058

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-
MAVTNFELLLLLGTLCISGFSATSYSTQVSFLQCFSSNLQHPNEASNVFLTTNSSNYSSVLQSSIRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLEQGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNKTVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLLDRSTQYKGFLKAKSDYLTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIAFPHRKGNIYAIQYLTNWDEEDETEKHISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLGRNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIPVFP
cccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccEEEccccccHHHHHHHHcccccccccccccccEEEEcccHHHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEccccccEEEEccccEEEEcccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHccccEEEEEEEEEEEccEEEEccccccccEEEEcccccccEEEEEEEEEEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccEEEEEEEEEEccHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHccccccccccEEccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccc
ccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccccccEEEccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccccEEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHEHHHHHHHHHHccccccccHHHHHcccccccHHcccccccccccccHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccc
MAVTNFELLLLLGTLCisgfsatsySTQVSFLQCFSsnlqhpneasnVFLTTNSSNYSSVLQSSIrnhrflnnstlkpqfiitpshVSHIQAAIRCSKQNGLQVRVRsaghdyeglsyvadvPFLIIDLFNlrsirvdidnesawvESGAILGELYHKIAEksklygfpagscstvgvgghfsgggfGTIFRKyglaadniidakivdvnGKILTRKSMGEDLFWAirggggasfGVIFSWKvkivpvpqtvTVFNVRYTLEQGASKLLQKWQNVAHELDEDIFLHAVLEVAdsttssagsnktVLVSFGSLYLGGVEKLVSLLQESfpqlglmrenctEMTWIQSVLYFAGFSTKDSLNVLLDRSTQYKGFLKAksdyltkpvsetgLEGLYRILLeeeapvliltpyggrmseisdseiafphrkgNIYAIQYltnwdeedeteKHISSMRRLYKYMkpyvskapraaylnyrdldlgrnnnagnssYAQAYVWGLKYFKNNFKRLVRVKtavdpdnffrneqsipvfp
MAVTNFELLLLLGTLCISGFSATSYSTQVSFLQCFSSNLQHPNEASNVFLTTNSSNYSSVLQSSIRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLEQGASKLLQKWQNVAHELDEDIFLHAVLEVADSttssagsnktVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLLDRSTQYKGFlkaksdyltkpvSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIAFPHRKGNIYAIQYltnwdeedeTEKHISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLGRNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTavdpdnffrneqsipvfp
MAVTNFElllllGTLCISGFSATSYSTQVSFLQCFSSNLQHPNEASNVFLTTNssnyssvlqssIRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCstvgvgghfsgggfgtIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLEQGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNKTVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLLDRSTQYKGFLKAKSDYLTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIAFPHRKGNIYAIQYLTNWDEEDETEKHISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLGRNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIPVFP
***TNFELLLLLGTLCISGFSATSYSTQVSFLQCFSSNLQH***ASNVFLTTN**NYSSVLQSSIRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLEQGASKLLQKWQNVAHELDEDIFLHAVLEVADSTT***GSNKTVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLLDRSTQYKGFLKAKSDYLTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIAFPHRKGNIYAIQYLTN***************RLYKYMKPYVSKAPRAAYLNYRDLDLGRNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFF**********
***TNFELLLLLGTLCISGFSATSYSTQVSFLQCFSSNLQHPNEASNVFLTTNSSNYSSVLQSSIRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLEQGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNKTVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLLDRSTQYKGFLKAKSDYLTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIAFPHRKGNIYAIQYLTNWDEEDETEKHISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLGRNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIPVF*
MAVTNFELLLLLGTLCISGFSATSYSTQVSFLQCFSSNLQHPNEASNVFLTTNSSNYSSVLQSSIRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLEQGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNKTVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLLDRSTQYKGFLKAKSDYLTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIAFPHRKGNIYAIQYLTNWDEEDETEKHISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLGRNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIPVFP
**VTNFELLLLLGTLCISGFSATSYSTQVSFLQCFSSNLQHPNEASNVFLTTNSSNYSSVLQSSIRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLEQGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNKTVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLLDRSTQYKGFLKAKSDYLTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIAFPHRKGNIYAIQYLTNWDEEDETEKHISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLGRNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIPVF*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAVTNFELLLLLGTLCISGFSATSYSTQVSFLQCFSSNLQHPNEASNVFLTTNSSNYSSVLQSSIRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLEQGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNKTVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLLDRSTQYKGFLKAKSDYLTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIAFPHRKGNIYAIQYLTNWDEEDETEKHISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLGRNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIPVFP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query531 2.2.26 [Sep-21-2011]
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.967 0.943 0.494 1e-144
A6P6V9544 Cannabidiolic acid syntha N/A no 0.937 0.915 0.501 1e-143
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.969 0.944 0.493 1e-143
A6P6W0545 Cannabidiolic acid syntha N/A no 0.967 0.943 0.483 1e-140
A6P6W1545 Cannabidiolic acid syntha N/A no 0.967 0.943 0.479 1e-140
Q9SVG4570 Reticuline oxidase-like p no no 0.928 0.864 0.485 1e-126
P30986538 Reticuline oxidase OS=Esc N/A no 0.883 0.871 0.427 2e-98
P93479535 Reticuline oxidase OS=Pap N/A no 0.877 0.871 0.417 3e-98
O06997447 Uncharacterized FAD-linke yes no 0.738 0.876 0.288 3e-27
Q796Y5451 Uncharacterized FAD-linke no no 0.753 0.886 0.277 3e-26
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function desciption
 Score =  512 bits (1318), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 264/534 (49%), Positives = 371/534 (69%), Gaps = 20/534 (3%)

Query: 15  LCISGFSATSYSTQVS-------FLQCFSSNLQHPNEASNVFL--TTNSSNYSSVLQSSI 65
           +C   F   S+  Q+S       FL+CFS ++  PN  +N  L  T +   Y S+L S+I
Sbjct: 11  VCKIIFFFLSFHIQISIANPRENFLKCFSKHI--PNNVANPKLVYTQHDQLYMSILNSTI 68

Query: 66  RNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFL 125
           +N RF++++T KP  I+TPS+ SHIQA I CSK+ GLQ+R RS GHD EG+SY++ VPF+
Sbjct: 69  QNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFV 128

Query: 126 IIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGG 185
           ++DL N+ SI++D+ +++AWVE+GA LGE+Y+ I EK++   FP G C TVGVGGHFSGG
Sbjct: 129 VVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGG 188

Query: 186 GFGTIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVKI 245
           G+G + R YGLAADNIIDA +V+V+GK+L RKSMGEDLFWAIRGGGG +FG+I +WK+K+
Sbjct: 189 GYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKL 248

Query: 246 VPVPQTVTVFNVRYTLE-QGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNKT 304
           V VP   T+F+V+  +E  G  KL  KWQN+A++ D+D+ L     +  + T + G NKT
Sbjct: 249 VAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHF-ITKNITDNHGKNKT 307

Query: 305 VLVS-FGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLN--- 360
            +   F S++ GGV+ LV L+ +SFP+LG+ + +C E +WI + ++++G    ++ N   
Sbjct: 308 TVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKK 367

Query: 361 -VLLDRSTQYKGFLKAKSDYLTKPVSETGLEGLYRILLEEE--APVLILTPYGGRMSEIS 417
            +LLDRS   K     K DY+ KP+ ET +  +   L EE+  A + +L PYGG M EIS
Sbjct: 368 EILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEIS 427

Query: 418 DSEIAFPHRKGNIYAIQYLTNWDEEDETEKHISSMRRLYKYMKPYVSKAPRAAYLNYRDL 477
           +S I FPHR G +Y + Y  +W+++++ EKHI+ +R +Y +  PYVS+ PR AYLNYRDL
Sbjct: 428 ESAIPFPHRAGIMYELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDL 487

Query: 478 DLGRNNNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIPVFP 531
           DLG+ N+A  ++Y QA +WG KYF  NF RLV+VKT VDP+NFFRNEQSIP  P
Sbjct: 488 DLGKTNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 541
Catalyzes the oxidative cyclization of the monoterpene moiety in cannabigerolic acid (CBGA), producing delta(9)-tetrahydrocannabinolate (THCA), the major cannabioid in drug-type Cannabis plants. Can also use cannabinerolic acid as substrate, but not cannabigerol or cannabinerol.
Cannabis sativa (taxid: 3483)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 7
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query531
224115650538 predicted protein [Populus trichocarpa] 0.986 0.973 0.699 0.0
224056799506 predicted protein [Populus trichocarpa] 0.947 0.994 0.700 0.0
255564327540 Reticuline oxidase precursor, putative [ 0.969 0.953 0.681 0.0
357448659529 Reticuline oxidase [Medicago truncatula] 0.979 0.982 0.615 1e-180
356558077510 PREDICTED: LOW QUALITY PROTEIN: reticuli 0.937 0.976 0.617 1e-178
357448665539 Reticuline oxidase [Medicago truncatula] 0.971 0.957 0.615 1e-177
449435884555 PREDICTED: reticuline oxidase-like prote 0.975 0.933 0.604 1e-177
356528092527 PREDICTED: reticuline oxidase-like prote 0.984 0.992 0.613 1e-176
359485305531 PREDICTED: reticuline oxidase-like prote 0.947 0.947 0.605 1e-176
224115242527 predicted protein [Populus trichocarpa] 0.949 0.956 0.602 1e-175
>gi|224115650|ref|XP_002317088.1| predicted protein [Populus trichocarpa] gi|222860153|gb|EEE97700.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/529 (69%), Positives = 438/529 (82%), Gaps = 5/529 (0%)

Query: 3   VTNFELLLLLGTLCISGFSATSYSTQVSFLQCFSSNLQHPNEASNVFLTTNSSNYSSVLQ 62
           + N   LLL+  L  S + A+S S Q  FLQCFSS +Q  N  S V LT NSS+YSSVL+
Sbjct: 5   IFNMRFLLLI-FLAPSVWPASSSSAQEKFLQCFSSRIQPSNPVSEVILTKNSSDYSSVLR 63

Query: 63  SSIRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADV 122
           SSIRN+RFLN S +KPQFIITP   SHIQAAI C+K+ G+Q+RVRS GHDYEGLS+ +  
Sbjct: 64  SSIRNYRFLNTSIVKPQFIITPFDESHIQAAIVCAKEYGMQIRVRSGGHDYEGLSFESYQ 123

Query: 123 PFLIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCSTVGVGGHF 182
            F+++DL  L SI VDI+NE+AW+ +GA +GELY+KIA+KSK++GFPAGSC TVGVGGHF
Sbjct: 124 EFVLVDLAKLSSIIVDIENETAWIGAGASIGELYYKIADKSKVHGFPAGSCPTVGVGGHF 183

Query: 183 SGGGFGTIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWK 242
           SGGGFGTIFRKYGLAADN+IDA+IVD NG+IL R+SMGEDLFWAIRGGG ASFGVI SWK
Sbjct: 184 SGGGFGTIFRKYGLAADNVIDAQIVDANGRILDRESMGEDLFWAIRGGGAASFGVILSWK 243

Query: 243 VKIVPVPQTVTVFNVRYTLEQGASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSN 302
           +++V VP TVTVFN+  TLEQGAS LLQKWQ++  +  ED+FLHA +EVA   TSS   N
Sbjct: 244 LRLVSVPPTVTVFNIERTLEQGASNLLQKWQSIGDKFHEDLFLHAAIEVA---TSSPNGN 300

Query: 303 KTVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVL 362
           KT+ VSF SL+LG  E+L+ ++Q+SFP+LGLMRENC+EM+WIQS+LYF GFS +DSL+VL
Sbjct: 301 KTIRVSFVSLFLGRAEELLPVMQDSFPELGLMRENCSEMSWIQSILYFGGFSPRDSLDVL 360

Query: 363 LDRSTQYKGFLKAKSDYLTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIA 422
           L R+ Q+KGF K KSDY+ +P+SETGLEGLYR LLEEEA +LILTPYGGRMSEISDSEI 
Sbjct: 361 LSRTAQFKGFFKGKSDYVKEPISETGLEGLYRRLLEEEASMLILTPYGGRMSEISDSEIP 420

Query: 423 FPHRKGNIYAIQYLTNWDEEDETEKHISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLGRN 482
           FPHR GNI+ IQYL  WD E+ETE+H+  MRRLY YM PYVS +PRAAYLNYRDLDLGRN
Sbjct: 421 FPHRSGNIFKIQYLITWDVEEETERHLKWMRRLYAYMAPYVSNSPRAAYLNYRDLDLGRN 480

Query: 483 NNAGNSSYAQAYVWGLKYFKNNFKRLVRVKTAVDPDNFFRNEQSIPVFP 531
           NN GN+S+A+A VWGLKYFKNNFKRLV+VKTA DP NFFRNEQSIPV P
Sbjct: 481 NN-GNTSFAKASVWGLKYFKNNFKRLVQVKTATDPSNFFRNEQSIPVLP 528

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224056799|ref|XP_002299029.1| predicted protein [Populus trichocarpa] gi|222846287|gb|EEE83834.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255564327|ref|XP_002523160.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537567|gb|EEF39191.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357448659|ref|XP_003594605.1| Reticuline oxidase [Medicago truncatula] gi|355483653|gb|AES64856.1| Reticuline oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356558077|ref|XP_003547335.1| PREDICTED: LOW QUALITY PROTEIN: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|357448665|ref|XP_003594608.1| Reticuline oxidase [Medicago truncatula] gi|355483656|gb|AES64859.1| Reticuline oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449435884|ref|XP_004135724.1| PREDICTED: reticuline oxidase-like protein-like [Cucumis sativus] gi|449488586|ref|XP_004158099.1| PREDICTED: reticuline oxidase-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356528092|ref|XP_003532639.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|359485305|ref|XP_002277281.2| PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224115242|ref|XP_002332196.1| predicted protein [Populus trichocarpa] gi|222875303|gb|EEF12434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query531
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.937 0.927 0.490 3.3e-134
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.937 0.932 0.483 3.9e-131
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.956 0.954 0.469 2.8e-130
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.949 0.929 0.482 3.2e-129
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.951 0.958 0.468 7.6e-128
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.960 0.942 0.462 6.8e-127
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.928 0.926 0.477 3e-124
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.951 0.952 0.455 3.9e-124
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.934 0.932 0.459 1e-123
TAIR|locus:505006170527 AT1G34575 [Arabidopsis thalian 0.915 0.922 0.477 4.4e-123
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1315 (468.0 bits), Expect = 3.3e-134, P = 3.3e-134
 Identities = 250/510 (49%), Positives = 345/510 (67%)

Query:    26 STQVSFLQCFSSN--LQHPNEASNVFLTTNXXXXXXXXXXXIRNHRFLNNSTLKPQFIIT 83
             S Q  F+ C   N  +  P E +    T N            +N RFL  S  KP FI +
Sbjct:    30 SLQDQFINCVQRNTHVYFPLEKTFFAPTKNVSMFSQVLESTAQNLRFLKKSMPKPGFIFS 89

Query:    84 PSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVA--DVPFLIIDLFNLRSIRVDIDN 141
             P H SH+QA+I CSK+  + +RVRS GHDYEGLSYV+  D PF+++DL  +R + ++I +
Sbjct:    90 PIHESHVQASIICSKKLRMHLRVRSGGHDYEGLSYVSQIDKPFILMDLSKMRQVNINIQD 149

Query:   142 ESAWVESGAILGELYHKIAEKSKLYGFPAGSCXXXXXXXXXXXXXXXXIFRKYGLAADNI 201
              SAWV+SGA +GELY++IAEKSK++GFPAG C                + RKYGL ADN+
Sbjct:   150 NSAWVQSGATVGELYYRIAEKSKVHGFPAGLCSSLGIGGHITGGAYGSMMRKYGLGADNV 209

Query:   202 IDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTL 261
             +DAKIVD NGK+L R +MGED FWAIRGG G SFG+I +WK+K+VPVP+TVTVF V  TL
Sbjct:   210 LDAKIVDANGKLLDRAAMGEDTFWAIRGGAGGSFGIILAWKIKLVPVPKTVTVFTVTKTL 269

Query:   262 EQGA-SKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNKTVLVSFGSLYLGGVEKL 320
             +Q   +K++ KWQ VA +L E++F+  +  VA +     G NKTV  S+ +L+LGG   L
Sbjct:   270 QQDVGNKIISKWQRVADKLVEELFIRVLFNVAGT-----GGNKTVTTSYNALFLGGKGTL 324

Query:   321 VSLLQESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLNVLLDRSTQY-KGFLKAKSDY 379
             ++++++SFP+LGL  ++C EM+W++S+ Y +GF T    NVLL   + + K   KAKSD+
Sbjct:   325 MNVMKKSFPELGLTFKDCIEMSWLESIAYISGFPTHTPTNVLLQGKSPFPKVSFKAKSDF 384

Query:   380 LTKPVSETGLEGLYRILLEEEAPVLILTPYGGRMSEISDSEIAFPHRKGNIYAIQYLTNW 439
             +  P+ E+GL+G+++ LL+E+ P++I  PYGG M++I +S+I FPHRKG ++ +QY+T+W
Sbjct:   385 VKTPIPESGLQGIFKKLLKEDIPLMIWNPYGGMMAKIPESQIPFPHRKGVLFKVQYVTSW 444

Query:   440 -DEEDETEKHISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLGRNNNAGNSSYAQAYVWGL 498
              D +    +HI+ +R LY YM PYVS  PR AY+NYRDLDLGRN     +   QA VWG 
Sbjct:   445 LDSDKRPSRHINWIRDLYSYMTPYVSSNPREAYVNYRDLDLGRNTKDVKTCIKQAQVWGA 504

Query:   499 KYFKNNFKRLVRVKTAVDPDNFFRNEQSIP 528
              YFKNNF RL+ +K  VDP+NFFR+EQSIP
Sbjct:   505 NYFKNNFNRLMMIKAKVDPENFFRHEQSIP 534
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006170 AT1G34575 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A6P6V9CBDAS_CANSA1, ., 2, 1, ., 3, ., 80.50190.93780.9154N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.21.3LOW CONFIDENCE prediction!
3rd Layer1.21.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XI001369
hypothetical protein (538 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 1e-31
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 5e-31
pfam0803145 pfam08031, BBE, Berberine and berberine like 2e-19
PRK11230499 PRK11230, PRK11230, glycolate oxidase subunit GlcD 1e-06
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 4e-06
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 2e-05
TIGR01679419 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase 5e-04
COG0812291 COG0812, MurB, UDP-N-acetylmuramate dehydrogenase 0.001
PLN02441525 PLN02441, PLN02441, cytokinin dehydrogenase 0.001
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  118 bits (298), Expect = 1e-31
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 3/139 (2%)

Query: 78  PQFIITPSHVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIR- 136
           P  ++ P     + A +R + +NGL V VR  G    G + +     +++DL  L  I  
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVLTGG--VVLDLSRLNGILE 58

Query: 137 VDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGL 196
           +D ++ +A VE+G  LG+L   +A K  L G   GS     VGG  +  G G    +YGL
Sbjct: 59  IDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERYGL 118

Query: 197 AADNIIDAKIVDVNGKILT 215
             DN++  ++V  +G+++ 
Sbjct: 119 TRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase Back     alignment and domain information
>gnl|CDD|223882 COG0812, MurB, UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|215242 PLN02441, PLN02441, cytokinin dehydrogenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 531
PLN02441525 cytokinin dehydrogenase 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
KOG1231505 consensus Proteins containing the FAD binding doma 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.94
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.91
PRK11183564 D-lactate dehydrogenase; Provisional 99.91
KOG1232511 consensus Proteins containing the FAD binding doma 99.89
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.88
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.87
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.87
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.86
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.86
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.84
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.82
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.81
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.74
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.7
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.67
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.66
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.63
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.61
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.5
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.48
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.17
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 95.38
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 94.93
PRK09799258 putative oxidoreductase; Provisional 94.63
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 93.47
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 92.32
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 91.52
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 91.12
PLN00107257 FAD-dependent oxidoreductase; Provisional 90.89
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 88.12
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 87.41
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 86.83
PLN02906 1319 xanthine dehydrogenase 82.7
PLN00192 1344 aldehyde oxidase 81.45
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=4.2e-39  Score=342.41  Aligned_cols=206  Identities=23%  Similarity=0.346  Sum_probs=178.2

Q ss_pred             CceeecCCCcCcHHHHhhccccccccCCCCCCccEEEecCCHHHHHHHHHHHH--hCCCceEEEcCCcCCCCCccccCCC
Q 037058           46 SNVFLTTNSSNYSSVLQSSIRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSK--QNGLQVRVRSAGHDYEGLSYVADVP  123 (531)
Q Consensus        46 ~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~t~~dv~~~v~~a~--~~~~~~~v~ggGh~~~g~~~~~~~~  123 (531)
                      .+.+.+ +..+++.+.      ..|+......|.+|++|+|++||+++|++|+  +++++|++||+|||+.|.+...+  
T Consensus        40 ~~~v~~-d~~~~~~~s------~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--  110 (525)
T PLN02441         40 DGHLSF-DPVSTASAS------KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--  110 (525)
T ss_pred             CceEEe-CHHHHHHHh------cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--
Confidence            344443 555665543      2488877889999999999999999999997  67999999999999999887754  


Q ss_pred             eEEEEecCCcc-------EEEeCCCCeEEEeCCCcHHHHHHHHHhcCCceeecC-CCCCCccccccccCCCCCCCccccC
Q 037058          124 FLIIDLFNLRS-------IRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPA-GSCSTVGVGGHFSGGGFGTIFRKYG  195 (531)
Q Consensus       124 givIdl~~l~~-------i~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~ggg~g~~s~~~G  195 (531)
                      |++|||++||+       +++|.+..+|+|++|++|.+|.+++.++|  +..+. +....++|||.+++||+|..+.+||
T Consensus       111 GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG  188 (525)
T PLN02441        111 GVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHG  188 (525)
T ss_pred             eEEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccC
Confidence            99999999999       37888899999999999999999999998  44333 5666889999999999999999999


Q ss_pred             ccccceeeEEEEeeCceEEE-ecCCCCcceeeeccccCcceEEEEEEEEEeeecCceEEEEEEEecchh
Q 037058          196 LAADNIIDAKIVDVNGKILT-RKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLEQ  263 (531)
Q Consensus       196 ~~~D~v~~~~vV~~~G~i~~-~~~~~~dL~~a~rG~~~~~~Givt~~~~k~~p~~~~~~~~~~~~~~~~  263 (531)
                      ..+|+|+++|||++||++++ ++++|+|||||+||| .|+|||||++|+|++|.|+...++.+.|..-+
T Consensus       189 ~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~Gg-lG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~  256 (525)
T PLN02441        189 PQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGG-LGQFGIITRARIALEPAPKRVRWIRVLYSDFS  256 (525)
T ss_pred             cHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccC-CCCcEEEEEEEEEEEecCCceEEEEEEcCCHH
Confidence            99999999999999999999 778899999999998 47999999999999999997777777665433

>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-140
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-124
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-116
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-96
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 3e-96
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 3e-96
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 3e-96
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 4e-95
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 4e-95
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 5e-95
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 1e-18
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 2e-17
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 1e-16
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 2e-15
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 1e-14
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 3e-13
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 7e-13
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 1e-11
3pm9_A476 Crystal Structure Of A Putative Dehydrogenase (Rpa1 4e-04
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  496 bits (1277), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 242/512 (47%), Positives = 344/512 (67%), Gaps = 13/512 (2%)
Query: 30  SFLQCFSSNLQHPNEASNVFL--TTNXXXXXXXXXXXIRNHRFLNNSTLKPQFIITPSHV 87
           +FL+CFS ++  PN  +N  L  T +           I+N RF++++T KP  I+TPS+ 
Sbjct: 6   NFLKCFSKHI--PNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNN 63
Query: 88  SHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVE 147
           SHIQA I CSK+ GLQ+R RS GHD EG+SY++ VPF+++DL N+ SI++D+ +++AWVE
Sbjct: 64  SHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVE 123
Query: 148 SGAILGELYHKIAEKSKLYGFPAGSCXXXXXXXXXXXXXXXXIFRKYGLAADNIIDAKIV 207
           +GA LGE+Y+ I EK++   FP G C                + R YGLAADNIIDA +V
Sbjct: 124 AGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLV 183
Query: 208 DVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLE-QGAS 266
           +V+GK+L RKSMGEDLFWAIRGGGG +FG+I +WK+K+V VP   T+F+V+  +E  G  
Sbjct: 184 NVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLV 243
Query: 267 KLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNKTVLVS-FGSLYLGGVEKLVSLLQ 325
           KL  KWQN+A++ D+D+ L     +  + T + G NKT +   F S++ GGV+ LV L+ 
Sbjct: 244 KLFNKWQNIAYKYDKDLVLMTHF-ITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMN 302
Query: 326 ESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDSLN----VLLDRSTQYKGFLKAKSDYLT 381
           +SFP+LG+ + +C E +WI + ++++G    ++ N    +LLDRS   K     K DY+ 
Sbjct: 303 KSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVK 362
Query: 382 KPVSETGLEGLYRILLEEE--APVLILTPYGGRMSEISDSEIAFPHRKGNIYAIQYLTNW 439
           KP+ ET +  +   L EE+  A + +L PYGG M EIS+S I FPHR G +Y + Y  +W
Sbjct: 363 KPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASW 422
Query: 440 DEEDETEKHISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLGRNNNAGNSSYAQAYVWGLK 499
           +++++ EKHI+ +R +Y +  PYVS+ PR AYLNYRDLDLG+ N+A  ++Y QA +WG K
Sbjct: 423 EKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEK 482
Query: 500 YFKNNFKRLVRVKTAVDPDNFFRNEQSIPVFP 531
           YF  NF RLV+VKT VDP+NFFRNEQSIP  P
Sbjct: 483 YFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution Length = 476 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-178
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-176
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-175
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-173
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-173
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-169
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-116
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 9e-52
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 4e-46
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 3e-21
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 2e-20
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 1e-16
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 9e-14
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 1e-07
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 5e-07
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 4e-04
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 7e-04
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  607 bits (1567), Expect = 0.0
 Identities = 251/513 (48%), Positives = 358/513 (69%), Gaps = 7/513 (1%)

Query: 26  STQVSFLQCFSSNLQHPNEASNVFLTTNSSNYSSVLQSSIRNHRFLNNSTLKPQFIITPS 85
           + + +FL+CFS ++ +      +  T +   Y S+L S+I+N RF++++T KP  I+TPS
Sbjct: 2   NPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPS 61

Query: 86  HVSHIQAAIRCSKQNGLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAW 145
           + SHIQA I CSK+ GLQ+R RS GHD EG+SY++ VPF+++DL N+ SI++D+ +++AW
Sbjct: 62  NNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAW 121

Query: 146 VESGAILGELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAK 205
           VE+GA LGE+Y+ I EK++   FP G C TVGVGGHFSGGG+G + R YGLAADNIIDA 
Sbjct: 122 VEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAH 181

Query: 206 IVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLE-QG 264
           +V+V+GK+L RKSMGEDLFWAIRGGGG +FG+I +WK+K+V VP   T+F+V+  +E  G
Sbjct: 182 LVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHG 241

Query: 265 ASKLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNKTVLVSFGSLYLGGVEKLVSLL 324
             KL  KWQN+A++ D+D+ L       + T +   +  TV   F S++ GGV+ LV L+
Sbjct: 242 LVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLM 301

Query: 325 QESFPQLGLMRENCTEMTWIQSVLYFAGFSTKDS----LNVLLDRSTQYKGFLKAKSDYL 380
            +SFP+LG+ + +C E +WI + ++++G    ++      +LLDRS   K     K DY+
Sbjct: 302 NKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYV 361

Query: 381 TKPVSETGLEGLYRILLEEEAP--VLILTPYGGRMSEISDSEIAFPHRKGNIYAIQYLTN 438
            KP+ ET +  +   L EE+    + +L PYGG M EIS+S I FPHR G +Y + Y  +
Sbjct: 362 KKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTAS 421

Query: 439 WDEEDETEKHISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLGRNNNAGNSSYAQAYVWGL 498
           W+++++ EKHI+ +R +Y +  PYVS+ PR AYLNYRDLDLG+ N+A  ++Y QA +WG 
Sbjct: 422 WEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGE 481

Query: 499 KYFKNNFKRLVRVKTAVDPDNFFRNEQSIPVFP 531
           KYF  NF RLV+VKT VDP+NFFRNEQSIP  P
Sbjct: 482 KYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query531
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.97
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.96
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.95
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.91
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.9
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.87
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.78
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.3
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.68
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.36
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 96.67
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 96.46
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 92.7
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 87.56
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=2.8e-88  Score=726.90  Aligned_cols=503  Identities=50%  Similarity=0.935  Sum_probs=427.6

Q ss_pred             ccCHHhhhhcCCCCCCCCCceeecCCCcCcHHHHhhccccccccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCceEEE
Q 037058           28 QVSFLQCFSSNLQHPNEASNVFLTTNSSNYSSVLQSSIRNHRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQNGLQVRVR  107 (531)
Q Consensus        28 ~~~~~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~t~~dv~~~v~~a~~~~~~~~v~  107 (531)
                      .++|.+||+.....+.++.+.|++|+|+.|++++.++++|.||+.....+|.+||+|+|++||+++|++|+++++||.||
T Consensus         4 ~~~f~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vr   83 (518)
T 3vte_A            4 RENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRTR   83 (518)
T ss_dssp             HHHHHHHHHHHCCC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEEEE
T ss_pred             hHHHHHHHHhcCCccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEE
Confidence            46899999988766677899999999999999988899999999988999999999999999999999999999999999


Q ss_pred             cCCcCCCCCccccCCCeEEEEecCCccEEEeCCCCeEEEeCCCcHHHHHHHHHhcCCceeecCCCCCCccccccccCCCC
Q 037058          108 SAGHDYEGLSYVADVPFLIIDLFNLRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCSTVGVGGHFSGGGF  187 (531)
Q Consensus       108 ggGh~~~g~~~~~~~~givIdl~~l~~i~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~  187 (531)
                      |||||+.+.+.....++++|||++||+|++|+++++|+||||+++++|+++|.++|.++.++.|.|++|||||+++|||+
T Consensus        84 ggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gGg~  163 (518)
T 3vte_A           84 SGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGY  163 (518)
T ss_dssp             SSCCCTTCTTTCCSSSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTCCC
T ss_pred             CCCcCCCCCccCCCCCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCCCC
Confidence            99999998774322249999999999999999999999999999999999999998779999999999999999999999


Q ss_pred             CCCccccCccccceeeEEEEeeCceEEEecCCCCcceeeeccccCcceEEEEEEEEEeeecCceEEEEEEEecch-hHHH
Q 037058          188 GTIFRKYGLAADNIIDAKIVDVNGKILTRKSMGEDLFWAIRGGGGASFGVIFSWKVKIVPVPQTVTVFNVRYTLE-QGAS  266 (531)
Q Consensus       188 g~~s~~~G~~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~~~~~Givt~~~~k~~p~~~~~~~~~~~~~~~-~~~~  266 (531)
                      |+++++||+++|+|+++|||++||++++.+.+++|||||+|||++|+|||||+++||++|.|+.++.|.+.+..+ +.+.
T Consensus       164 G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~  243 (518)
T 3vte_A          164 GALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLV  243 (518)
T ss_dssp             CTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHHHH
T ss_pred             ccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHHHH
Confidence            999999999999999999999999999854568999999999866899999999999999999888888877654 4578


Q ss_pred             HHHHHHHHHhhcCCccceEEEEEEeccCCCCCCCCCceEEEEEEEEeeCChhhHHHHHHhhcccCCCccccceeechHHH
Q 037058          267 KLLQKWQNVAHELDEDIFLHAVLEVADSTTSSAGSNKTVLVSFGSLYLGGVEKLVSLLQESFPQLGLMRENCTEMTWIQS  346 (531)
Q Consensus       267 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~  346 (531)
                      +++.+||++++++|+++++.+.+...|+......++..+.+.+.++|+|+.+++++.|.+.|+.++....++.+++|++.
T Consensus       244 ~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w~~~  323 (518)
T 3vte_A          244 KLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDT  323 (518)
T ss_dssp             HHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECHHHH
T ss_pred             HHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecchhhh
Confidence            89999999999999999998888753210000112233567888999999999999999888888877677889999998


Q ss_pred             HHHhhccCCC-Cc---hhhhcccCccccccccccccCccCCCCHHHHHHHHHHHHhC--CCcEEEEEecCCcCCCCCCCC
Q 037058          347 VLYFAGFSTK-DS---LNVLLDRSTQYKGFLKAKSDYLTKPVSETGLEGLYRILLEE--EAPVLILTPYGGRMSEISDSE  420 (531)
Q Consensus       347 ~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~l~~~~~~~~~~--~~~~i~l~~~Ggav~~v~~~~  420 (531)
                      +.+++++..+ .+   ++.++++......+||.||+|+.+++++++++.+++.+.+.  +.+.+.++++||++++++.++
T Consensus       324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v~~~~  403 (518)
T 3vte_A          324 TIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESA  403 (518)
T ss_dssp             HHHTSSSCCC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTSCTTS
T ss_pred             hhhhhcCCccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCCCCCC
Confidence            8888754322 22   34444443333456788999998889999999999988763  346899999999999999999


Q ss_pred             CcccccCCCeEEEEEEEEeCCcchhHHHHHHHHHHHHhhcccccCCCCccccCCCCcccC-CCCCCCCCchhhhhhHHHh
Q 037058          421 IAFPHRKGNIYAIQYLTNWDEEDETEKHISSMRRLYKYMKPYVSKAPRAAYLNYRDLDLG-RNNNAGNSSYAQAYVWGLK  499 (531)
Q Consensus       421 taf~~Rd~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Y~Ny~d~~l~-~~~~~~~~~~~~~~~~~~~  499 (531)
                      |||+||++.+|.+++.+.|.+++.+++..+|++++++.|.|+.+..+.++|+||+|.+++ .+. ....+|+.++.|++.
T Consensus       404 TAf~hR~~~~~~~~~~~~w~~~~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~-~~~~~~~~~~~w~~~  482 (518)
T 3vte_A          404 IPFPHRAGIMYELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNH-ASPNNYTQARIWGEK  482 (518)
T ss_dssp             SSCCCCTTCCEEEEEEEEECCTTTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCT-TSCCCHHHHHHHHHH
T ss_pred             CcccccCcceEEEEEEEecCCcchhHHHHHHHHHHHHHhccccCCCCccccccCCCcccccccc-ccccchhhhhhHHHH
Confidence            999999955899999999988888889999999999999998765667999999998876 211 123446666789999


Q ss_pred             hhhccHHHHHHHHhhcCCCCCcccCCCCCCCC
Q 037058          500 YFKNNFKRLVRVKTAVDPDNFFRNEQSIPVFP  531 (531)
Q Consensus       500 yyg~n~~RL~~IK~kyDP~~vF~~~q~i~~~~  531 (531)
                      |||+||+||++||+||||+|+|+++|+|||++
T Consensus       483 Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~  514 (518)
T 3vte_A          483 YFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP  514 (518)
T ss_dssp             HSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCC
T ss_pred             HhHhHHHHHHHHHhhcCchhcccCCCCCCCCC
Confidence            99999999999999999999999999999974
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 531
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 2e-19
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 7e-16
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 1e-04
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 0.003
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 84.6 bits (208), Expect = 2e-19
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 10/186 (5%)

Query: 70  FLNNSTLKPQFIITPSHVSHIQAAIRCSKQN---GLQVRVRSAGHDYEGLSYVADVPFLI 126
           F N ++  P  ++ PS    + A +  +         +  R  GH   G ++      + 
Sbjct: 22  FGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVN 81

Query: 127 IDLFN----LRSIRVDIDNESAWVESGAILGELYHKIAEKSKLYGFPAGSCSTVGVGGHF 182
           +           I V  D          +  ++      +             + VGG  
Sbjct: 82  MASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSW-TDYLYLTVGGTL 140

Query: 183 SGGGFGTIFRKYGLAADNIIDAKIVDVNGKILT-RKSMGEDLFWAIRGGGGASFGVIFSW 241
           S  G      ++G    N+++  ++  +G+++T  K +  DLF A+ GG G  FGVI   
Sbjct: 141 SNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRA 199

Query: 242 KVKIVP 247
           ++ + P
Sbjct: 200 RIAVEP 205
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query531
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.96
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.86
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.85
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.82
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 94.05
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 93.43
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 93.33
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 93.16
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 92.35
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 91.8
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=3.9e-37  Score=291.59  Aligned_cols=176  Identities=19%  Similarity=0.338  Sum_probs=160.0

Q ss_pred             ccccCCCCCCccEEEecCCHHHHHHHHHHHHhC---CCceEEEcCCcCCCCCccccCCCeEEEEecCCccE------EEe
Q 037058           68 HRFLNNSTLKPQFIITPSHVSHIQAAIRCSKQN---GLQVRVRSAGHDYEGLSYVADVPFLIIDLFNLRSI------RVD  138 (531)
Q Consensus        68 ~r~~~~~~~~p~~vv~p~t~~dv~~~v~~a~~~---~~~~~v~ggGh~~~g~~~~~~~~givIdl~~l~~i------~~d  138 (531)
                      ..|+......|.+|++|+|++||+++|++|+++   ++|+++||+||++.+.+...+  +++|||++||+|      ++|
T Consensus        20 ~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~~--~ividl~~l~~i~~~~~~~id   97 (206)
T d1w1oa2          20 TDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPG--GVVVNMASLGDAAAPPRINVS   97 (206)
T ss_dssp             CCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTT--SEEEEGGGGGCSSSSCSEEEC
T ss_pred             ECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccCC--CEeeeccccceeeeceeEEEe
Confidence            346666678999999999999999999999997   689999999999998877654  899999999985      789


Q ss_pred             CCCCeEEEeCCCcHHHHHHHHHhcCCceeecC-CCCCCccccccccCCCCCCCccccCccccceeeEEEEeeCceEEE-e
Q 037058          139 IDNESAWVESGAILGELYHKIAEKSKLYGFPA-GSCSTVGVGGHFSGGGFGTIFRKYGLAADNIIDAKIVDVNGKILT-R  216 (531)
Q Consensus       139 ~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~i~~-~  216 (531)
                      ++..+++||||+++.+|.++|.++|  +.++. +....++|||++++||+|..+.+||..+|+|+++|+|++||++++ +
T Consensus        98 ~~~~~v~v~aG~~~~~l~~~l~~~G--l~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~~~s  175 (206)
T d1w1oa2          98 ADGRYVDAGGEQVWIDVLRASLARG--VAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCS  175 (206)
T ss_dssp             TTSSEEEEETTCBHHHHHHHHHTTT--EEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEE
T ss_pred             cCCCEEEEEcceehhhhhhhhhccc--cccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEEEEC
Confidence            9999999999999999999999998  54443 566778999999999999999999999999999999999999999 7


Q ss_pred             cCCCCcceeeeccccCcceEEEEEEEEEeeec
Q 037058          217 KSMGEDLFWAIRGGGGASFGVIFSWKVKIVPV  248 (531)
Q Consensus       217 ~~~~~dL~~a~rG~~~~~~Givt~~~~k~~p~  248 (531)
                      +++|+||||++||+. |+|||||++|||++|+
T Consensus       176 ~~~~~dl~~a~~g~~-G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         176 KQLNADLFDAVLGGL-GQFGVITRARIAVEPA  206 (206)
T ss_dssp             SSSSHHHHHHHTTCT-TCSEEEEEEEEEEEEC
T ss_pred             CCCCHHHHHHHhhCC-CccEeEEEEEEEEEcC
Confidence            788999999999994 7999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure