Citrus Sinensis ID: 037063
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 588 | 2.2.26 [Sep-21-2011] | |||||||
| Q9N0E7 | 882 | Molybdenum cofactor sulfu | yes | no | 0.595 | 0.396 | 0.267 | 1e-21 | |
| Q8LGM7 | 816 | Molybdenum cofactor sulfu | N/A | no | 0.630 | 0.454 | 0.260 | 1e-21 | |
| Q96EN8 | 888 | Molybdenum cofactor sulfu | yes | no | 0.600 | 0.397 | 0.265 | 2e-21 | |
| Q14CH1 | 862 | Molybdenum cofactor sulfu | yes | no | 0.639 | 0.436 | 0.257 | 3e-20 | |
| Q21657 | 709 | Molybdenum cofactor sulfu | yes | no | 0.537 | 0.445 | 0.273 | 6e-17 | |
| Q9C5X8 | 819 | Molybdenum cofactor sulfu | no | no | 0.630 | 0.452 | 0.253 | 9e-17 | |
| Q655R6 | 824 | Molybdenum cofactor sulfu | no | no | 0.627 | 0.447 | 0.231 | 2e-16 | |
| Q16P90 | 764 | Molybdenum cofactor sulfu | N/A | no | 0.530 | 0.408 | 0.255 | 2e-16 | |
| B4M3C9 | 780 | Molybdenum cofactor sulfu | N/A | no | 0.528 | 0.398 | 0.267 | 3e-16 | |
| A1CHL0 | 845 | Molybdenum cofactor sulfu | N/A | no | 0.722 | 0.502 | 0.245 | 8e-16 |
| >sp|Q9N0E7|MOCOS_BOVIN Molybdenum cofactor sulfurase OS=Bos taurus GN=MOCOS PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 121/452 (26%), Positives = 197/452 (43%), Gaps = 102/452 (22%)
Query: 99 IRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFF 158
+RA+++ L+ Y+ D+ G LF SQ+ S ++ + +V P
Sbjct: 38 LRAREFGRLAGTVYL--DHAGTTLFPQSQITSFMKDL------------MENVYGNP--- 80
Query: 159 DICYRSVNLNSWLQYGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY 218
S N++S L + + E ++R RI+ + S +DYT++FT+ ++A KL+AE++
Sbjct: 81 ----HSQNISSKLTHDTVE-----QVRFRILAHFHTSPEDYTVIFTSGSTAALKLVAEAF 131
Query: 219 PF-------------YSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHS 265
P+ Y +V AA+ + S R + SAE
Sbjct: 132 PWVSPGPEGSGSCFCYLTDSHTSVVGMRKITAAMNVSSIPVRPEDMWSAE---------- 181
Query: 266 GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWMS--------VAAEKG-WHVL 316
++ + LF +P QS +G RY W+ A+ G W VL
Sbjct: 182 ----RQDAAAAGDPAGQPPHLFCYPAQSNFSGTRYPLSWIGEVKSGRRRPASRPGKWFVL 237
Query: 317 LDATA-LGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLS----GS 371
LDA A +G+ +D LS+ + DF+ SFYKIFG P+G G L V A++L G
Sbjct: 238 LDAAAFVGTSPLD---LSVHQADFVPISFYKIFG-FPTGLGALLVNNRLAALLRKTYFGG 293
Query: 372 TSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHA-DAL---- 426
++ + + G + ES +F + +IS ++ L H DAL
Sbjct: 294 GTAAAYLAGDD--------FYVPRESVAERFEDGTIS-----FLDVIALKHGFDALERLT 340
Query: 427 -GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYG------PKVMFDRGPSLAFN 479
G+ I L + AL +L +P+ G P+V+IY P+V +GP ++FN
Sbjct: 341 GGMESIRQHTFTLAQYTYTALSSLRYPN---GAPVVQIYSDSDFSSPEV---QGPVISFN 394
Query: 480 VFDWNGTRIDPALVQKLADRHNISLSCGFLQN 511
V D +G + + V K+A HNI + G N
Sbjct: 395 VLDDHGNVVGYSQVDKMASLHNIHVRTGCFCN 426
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Bos taurus (taxid: 9913) EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 9 |
| >sp|Q8LGM7|MOCOS_SOLLC Molybdenum cofactor sulfurase OS=Solanum lycopersicum GN=FLACCA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 116/445 (26%), Positives = 192/445 (43%), Gaps = 74/445 (16%)
Query: 97 DRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPP 156
D IRA ++ L N+ V D+ G L+S SQM + +++S+ S S+ E
Sbjct: 28 DEIRATEFKRL--NDTVYLDHAGATLYSESQMEAVFKDLNSTLYGNPHSQSTCSLATE-- 83
Query: 157 FFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAE 216
++ K R++++ F N S +Y+ +FT+ ++A KL+ E
Sbjct: 84 ----------------------DIVGKARQQVLSFFNASPREYSCIFTSGATAALKLVGE 121
Query: 217 SYPFYSNPRLLTVYDHENEAAALMI-ESSKKRGARVSSAEFAWPNLRIHSG--------- 266
++P+ SN + Y EN + L I E + +GA A FA H G
Sbjct: 122 TFPWSSNSSFM--YSMENHNSVLGIREYALSKGA----AAFAVDIEDTHVGESESPQSNL 175
Query: 267 KLMKKIVGKRKKKKKKKRG-------LFVFPLQSKVTGARYSYMWMSVAAEKG------- 312
KL + + +R + K G LF FP + +G ++ + + E
Sbjct: 176 KLTQHHIQRRNEGGVLKEGMTGNTYNLFAFPSECNFSGRKFDPNLIKIIKEGSERILESS 235
Query: 313 ------WHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSAS 366
W VL+DA A G + LS+FK DF++ SFYK+FG P+G G L V+K +A
Sbjct: 236 QYSRGCWLVLIDA-AKGCA-TNPPNLSMFKADFVVFSFYKLFGY-PTGLGALIVRKDAAK 292
Query: 367 VLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL 426
++ + S T+ E ++E F + +IS +S ++ G + L
Sbjct: 293 LMKKTYFSGGTVTAAIADVDFFKRREGVEEF----FEDGTISFLSITAIQ-HGFKIINML 347
Query: 427 GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGT 486
I + ++ N L+ L H E G + +YG + + GP+++FN+ +GT
Sbjct: 348 TTSSIFRHTTSIAAYVRNKLLALKH---ENGEFVCTLYG-LLSSEMGPTVSFNMKRPDGT 403
Query: 487 RIDPALVQKLADRHNISLSCGFLQN 511
V+KLA I L G N
Sbjct: 404 WYGYREVEKLATLAGIQLRTGCFCN 428
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q96EN8|MOCOS_HUMAN Molybdenum cofactor sulfurase OS=Homo sapiens GN=MOCOS PE=1 SV=2 | Back alignment and function description |
|---|
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 119/448 (26%), Positives = 190/448 (42%), Gaps = 95/448 (21%)
Query: 99 IRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFF 158
+RA+++ L+ Y+ D+ G LFS SQ+ S +S++ + S
Sbjct: 38 LRAREFSRLAGTVYL--DHAGATLFSQSQLESFTSDLMENTYGNPHSQ------------ 83
Query: 159 DICYRSVNLNSWLQYGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY 218
N++S L + + E ++R RI+ + + +DYT++FTA ++A KL+AE++
Sbjct: 84 -------NISSKLTHDTVE-----QVRYRILAHFHTTAEDYTVIFTAGSTAALKLVAEAF 131
Query: 219 PF-------------YSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHS 265
P+ Y +V N A+ + S+ R + SAE
Sbjct: 132 PWVSQGPESSGSRFCYLTDSHTSVVGMRNVTMAINVISTPVRPEDLWSAE---------- 181
Query: 266 GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWMS---------VAAEKGWHVL 316
+ + LF +P QS +G RY W+ V+ W VL
Sbjct: 182 -----ERSASASNPDCQLPHLFCYPAQSNFSGVRYPLSWIEEVKSGRLHPVSTPGKWFVL 236
Query: 317 LDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVL-----SGS 371
LDA + S L LS + DF+ SFYKIFG P+G G L V +A +L G
Sbjct: 237 LDAASYVSTS--PLDLSAHQADFVPISFYKIFG-FPTGLGALLVHNRAAPLLRKTYFGGG 293
Query: 372 TSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL--GLI 429
T+S ++ + +S +F + +IS + ++ G D + L G+
Sbjct: 294 TAS---------AYLAGEDFYIPRQSVAQRFEDGTISFLDVIALK-HGFDTLERLTGGME 343
Query: 430 LISNRARYLINWLANALMNLHHPHSETGIPLVRIYG------PKVMFDRGPSLAFNVFDW 483
I L + AL +L +P+ G P+VRIY P+V +GP + FNV D
Sbjct: 344 NIKQHTFTLAQYTYVALSSLQYPN---GAPVVRIYSDSEFSSPEV---QGPIINFNVLDD 397
Query: 484 NGTRIDPALVQKLADRHNISLSCGFLQN 511
G I + V K+A +NI L G N
Sbjct: 398 KGNIIGYSQVDKMASLYNIHLRTGCFCN 425
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. In vitro, the C-terminal domain is able to reduces N-hydroxylated prodrugs, such as benzamidoxime. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q14CH1|MOCOS_MOUSE Molybdenum cofactor sulfurase OS=Mus musculus GN=Mocos PE=2 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 123/477 (25%), Positives = 195/477 (40%), Gaps = 101/477 (21%)
Query: 74 PSLQESFANFTKVFPQYLQTDQADRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSS 133
P+ Q T+ +R Q++ L+ Y+ D+ G LF SQ+ + +
Sbjct: 13 PAFQRHLEASTQRLAHGYGLRSMSELRDQEFGRLAGTVYL--DHAGATLFPQSQLTNFTK 70
Query: 134 NVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMN 193
++ + +V P S N+ S L + + E ++R RI+ +
Sbjct: 71 DL------------MENVYGNP-------HSQNITSKLTHDTVE-----QVRYRILTHFH 106
Query: 194 ISEDDYTLVFTANQSSAFKLLAESYPF-------------YSNPRLLTVYDHENEAAALM 240
+ +DY ++FTA ++A +L+AE++P+ Y +V AAA+
Sbjct: 107 TTPEDYIVIFTAGSTAALRLVAEAFPWVSRSPENSGSHFCYLTDNHTSVVGMRKVAAAMS 166
Query: 241 IESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARY 300
+ S + + SAE K G + LF +P QS +G RY
Sbjct: 167 VTSIPVKPEDMWSAE--------------GKDAGACDPDCQLPH-LFCYPAQSNFSGTRY 211
Query: 301 SYMWMS---------VAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGEN 351
W+ V A W VLLDA + S L LS + DF+ SFYKIFG
Sbjct: 212 PLSWVEEVKSGRRSPVNAPGKWFVLLDAASYVSTS--PLDLSAHQADFIPISFYKIFGL- 268
Query: 352 PSGFGCLFVKKSSASVLS----GSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407
P+G G L V K A +L G ++ + + G + S +F + +I
Sbjct: 269 PTGLGALLVNKHVAPLLRKGYFGGGTAAAYLAGED--------FYVPRSSVAERFEDGTI 320
Query: 408 SGVSSKLVECKGLDHA-DAL-----GLILISNRARYLINWLANALMNLHHPHSETGIPLV 461
S ++ L H DAL G++ I L+ + +AL +L + + G P+V
Sbjct: 321 S-----FLDVIALKHGFDALEHLTGGMVNIQQHTFALVQYTHSALSSLRYLN---GAPVV 372
Query: 462 RIYG------PKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNI 512
RIY P V +GP + FNV D G I + V K+A +NI L G N+
Sbjct: 373 RIYSDSEFSSPDV---QGPIINFNVLDDGGKIIGYSQVDKMASLYNIHLRTGCFCNL 426
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q21657|MOCOS_CAEEL Molybdenum cofactor sulfurase OS=Caenorhabditis elegans GN=R03A10.3 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 150/344 (43%), Gaps = 28/344 (8%)
Query: 185 RKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESS 244
R RI+ + N + DDY +V T N + K++AE++ F + A+++ S
Sbjct: 50 RLRILQYFNTTSDDYFVVLTNNTTHGLKIVAENFKFGQKTHSIL------NIASVLHGGS 103
Query: 245 KKRGARVSSAEFAWPNLRIHSGKLMK-KIVGKRKKKKKK----KRGLFVFPLQSKVTGAR 299
G S + +GK+ V + + + + LFV S G +
Sbjct: 104 SNLGYLYDSHHSVVGLRHVVNGKVNSISCVNEESILEHEIPDVEHSLFVLTAMSNFCGKK 163
Query: 300 YSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLF 359
YS + EKGW V LDA + S L LS +P+F+ SFYKIFG P+G G L
Sbjct: 164 YSLESVHRLQEKGWAVCLDAASFVSS--SALDLSQQRPNFIAFSFYKIFGY-PTGIGALL 220
Query: 360 VKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKG 419
V+K SA ++ ++ + T+ ++ E+ L E ++ F E +++ ++ KG
Sbjct: 221 VRKDSAHLIEKTSFAGGTVQSVD----EMSMFFVLREFERA-FEEGTLNYYGIAQLQ-KG 274
Query: 420 LDHADALGLI-LISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFD----RGP 474
+ + G I I N +L NAL L G P+V IY F+ +GP
Sbjct: 275 FEEIERCGGISSIRNLTHHLCK---NALYMLKSKKHPNGRPVVEIYSQSEQFENPDKQGP 331
Query: 475 SLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEY 518
+AFN+ +G V+K+ I L G NI +Y
Sbjct: 332 IVAFNLKRPDGGYYGYTEVEKMCAIFGIELRTGCFCNIGACKKY 375
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q9C5X8|MOCOS_ARATH Molybdenum cofactor sulfurase OS=Arabidopsis thaliana GN=ABA3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 110/434 (25%), Positives = 187/434 (43%), Gaps = 63/434 (14%)
Query: 175 SEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHEN 234
S S+L + R +++++ N S +DY+ +FT+ ++A KL+ E++P+ + L Y EN
Sbjct: 75 SATSDLIADARHQVLEYFNASPEDYSCLFTSGATAALKLVGETFPWTQDSNFL--YTMEN 132
Query: 235 EAAALMI-ESSKKRGARVSSAEFA----WPNLRIHSG---KLMKKIVGKR---KKKKKKK 283
+ L I E + +GA + + P +SG K+ + V R K +K++
Sbjct: 133 HNSVLGIREYALAQGASACAVDIEEAANQPGQLTNSGPSIKVKHRAVQMRNTSKLQKEES 192
Query: 284 RG----LFVFPLQSKVTGARYSYMWMSVAAE--------------KGWHVLLDATALGSK 325
RG LF FP + +G R++ + + E K W VL+DA +K
Sbjct: 193 RGNAYNLFAFPSECNFSGLRFNLDLVKLMKENTETVLQGSPFSKSKRWMVLIDA----AK 248
Query: 326 DMDTL--GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEP 383
TL LS + DF++ SFYK+FG P+G G L V+ +A +L + S T+
Sbjct: 249 GCATLPPDLSEYPADFVVLSFYKLFGY-PTGLGALLVRNDAAKLLKKTYFSGGTVAASIA 307
Query: 384 SFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLA 443
+ E ++E F + S S +S + G +L I L ++
Sbjct: 308 DIDFVKRRERVEEF----FEDGSASFLSIAAIR-HGFKLLKSLTPSAIWMHTTSLSIYVK 362
Query: 444 NALMNLHHPHSETGIPLVRIYGPKVM----FDRGPSLAFNVFDWNGTRIDPALVQKLADR 499
L L H + G + +YG + + GP++ FN+ +G+ V+KLA
Sbjct: 363 KKLQALRHGN---GAAVCVLYGSENLELSSHKSGPTVTFNLKRPDGSWFGYLEVEKLASL 419
Query: 500 HNISLSCGFLQNIFFSGEYEQERVRVLETRSGT---------NETRSG--VSVVTAALGC 548
I L G N +Y + + E RS N+ +G V + G
Sbjct: 420 SGIQLRTGCFCNPGACAKYLE--LSHSELRSNVEAGHICWDDNDVINGKPTGAVRVSFGY 477
Query: 549 LTNFEDTYRLWAFV 562
++ FED + F+
Sbjct: 478 MSTFEDAKKFIDFI 491
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Modulates cold stress- and osmotic stress-responsive gene expression by acting as key regulator of abscisic acid (ABA) biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q655R6|MOCOS_ORYSJ Molybdenum cofactor sulfurase OS=Oryza sativa subsp. japonica GN=MCSU3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 106/457 (23%), Positives = 185/457 (40%), Gaps = 88/457 (19%)
Query: 96 ADRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQM----HSCSSNVHSSAASTSSSSPLPSV 151
D +RA ++ L Y+ D+ G L+S +QM +SNV+ + S S SS
Sbjct: 25 VDEMRAAEFKRLEGMAYL--DHAGATLYSEAQMADVLKDLASNVYGNPHSQSDSS----- 77
Query: 152 QLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAF 211
S+L + R +++ + N S +Y +FT+ ++A
Sbjct: 78 -----------------------MAASDLVTAARHQVLKYFNASPREYKCIFTSGATAAL 114
Query: 212 KLLAESYPFYSNPRLLTVYDHENEAAALMI-ESSKKRGARVSSAEF-AWPNLRIHSGKLM 269
KL+ E +P+ +Y EN + L I E + +GA V + + +L +G
Sbjct: 115 KLVGECFPWSRES--CYMYTMENHNSVLGIREYALSKGATVLAVDVEEGADLAKDNGSYS 172
Query: 270 KKIVGKRKKKKKKKR-------------------GLFVFPLQSKVTGARYSYMWMSVAAE 310
+ +R +++ K +F FP + +G ++S + + E
Sbjct: 173 LYKISRRTNQRRSKDVLSHNCQNGSLSDISGNNWNIFAFPSECNFSGQKFSLSLVKLIKE 232
Query: 311 --------KGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKK 362
W VL+DA A G + L+++ DF++CSFYKIFG P+G G L VK
Sbjct: 233 GKIPLQQQGKWMVLIDA-AKGCA-TEPPNLTVYPADFVVCSFYKIFGY-PTGLGALIVKN 289
Query: 363 SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDH 422
+A++L+ + S T+ + +D + K E + + + L H
Sbjct: 290 EAANLLNKTYFSGGTVAA---------SIADIDFVQKRKNIEQVLEDGTISFLNIASLRH 340
Query: 423 A----DALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVM----FDRGP 474
+ L I L ++ N +++L H + I + IYG + GP
Sbjct: 341 GFKIIEMLTTSAIERHTTSLATYVRNKMLDLKHSNE---INVCTIYGQQYSKVEGLKMGP 397
Query: 475 SLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQN 511
++ FN+ +G+ V+KLA I L G N
Sbjct: 398 TITFNLKREDGSWFGYREVEKLASLFGIHLRTGCFCN 434
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q16P90|MOCO3_AEDAE Molybdenum cofactor sulfurase 3 OS=Aedes aegypti GN=mal3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 152/349 (43%), Gaps = 37/349 (10%)
Query: 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAA 238
+L ++R R++ N +Y+L+FT+ +++ KLLAESY F P VY ++ +
Sbjct: 68 DLLDQVRYRVLRHFNTRSSEYSLIFTSGTTASLKLLAESYEF--APEGAFVYLKDSHTSV 125
Query: 239 LMIESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGA 298
L + + E +P + +L+K++ ++ + L VFP Q G
Sbjct: 126 LGMRE-------IVGTERIYP---VEREQLLKEL-DSSERSDSEHSSLIVFPAQCNFNGV 174
Query: 299 RYSYMWMSVAAEKG--------WHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGE 350
+Y + G + V LDA + S L LS ++PDF+ SFYKIFG
Sbjct: 175 KYPLELVRKIQRNGISGYGKERFRVCLDAASFVSTSF--LDLSKYQPDFVCLSFYKIFG- 231
Query: 351 NPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410
P+G G L V ++A L T+ + ++ + L E +F + +++
Sbjct: 232 YPTGLGALLVHHTAADQLRKKYYGGGTVKIAMAGRNFHVKRDPLVE----RFEDGTLA-F 286
Query: 411 SSKLVECKGLDHADAL-----GLIL---ISNRARYLINWLANALMNLHHPHSETGIPLVR 462
+S + +G + + L GL IS + +L + N L L H + + L
Sbjct: 287 TSIIALLQGFETLERLVPSTAGLRTIERISQQTFHLGRYCYNRLKALRHSNGNAVVKLYH 346
Query: 463 IYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQN 511
G + +G + FN+ +GT + A V +A HNI L G N
Sbjct: 347 DTGFEDQGLQGGIVNFNILHEDGTYVGFAEVSYMASLHNILLRTGCFCN 395
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Aedes aegypti (taxid: 7159) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|B4M3C9|MOCOS_DROVI Molybdenum cofactor sulfurase OS=Drosophila virilis GN=mal PE=3 SV=1 | Back alignment and function description |
|---|
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 97/362 (26%), Positives = 145/362 (40%), Gaps = 51/362 (14%)
Query: 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIE 242
++R RI++F N S DDY +VFTAN ++A +L+AE + F + Y EN + L +
Sbjct: 69 QVRYRILEFFNTSADDYHVVFTANATAALRLVAEHFDFGKDGNFH--YCQENHTSVLGMR 126
Query: 243 SSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSY 302
K R+ +A I + + L VF Q +G +
Sbjct: 127 QLVK-AKRI----YALNKDSIVLNDVEGPVAPAAATGAAHGNSLVVFSAQCNFSGYKLPL 181
Query: 303 -----------------MWMSVAAEK-------GWHVLLDATALGSKDMDTLGLSLFKPD 338
+W A E+ ++V LDA + + L L ++PD
Sbjct: 182 TVIEKIQSRGMQQLGKCIWTEPAGERVNNTNNNNYYVCLDAASFAASS--PLDLQRYRPD 239
Query: 339 FLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESS 398
F+ SFYKIFG P+G G L V K A VL TI P E L +
Sbjct: 240 FVCLSFYKIFG-YPTGVGALLVSKRGADVLRKRFYGGGTINYAYPHTME----HQLRSTF 294
Query: 399 QSKFPESSISGVSSKLVE-CKGLDHADAL----GLILISNRARYLINWLANALMNLHHPH 453
+F + ++ +S +VE +G + L + IS L + L L HP+
Sbjct: 295 HERFEDGTLPFLS--IVELLQGFRTLERLVPGRSMERISRHVHGLARYCEQQLKQLQHPN 352
Query: 454 SETGIPLVRIY---GPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQ 510
G PLV +Y G + +G +AFNV G + V +A H I L G
Sbjct: 353 ---GAPLVTLYNHAGYGDLAKQGGIVAFNVRTDAGDYVGFGEVACVAALHRILLRTGCFC 409
Query: 511 NI 512
N+
Sbjct: 410 NL 411
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Drosophila virilis (taxid: 7244) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|A1CHL0|MOCOS_ASPCL Molybdenum cofactor sulfurase OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=hxB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 125/510 (24%), Positives = 208/510 (40%), Gaps = 85/510 (16%)
Query: 93 TDQADRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCS----SNVHSSAASTSSSSPL 148
++ D IR ++Y L Y+ D+ G L++ S + + S SN+ + S S+SS L
Sbjct: 19 SEDVDIIREREYPQLKDTTYL--DHAGTTLYAKSLIEAFSRDLTSNLFGNPHSMSASSQL 76
Query: 149 PSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMNISEDDYTLVFTANQS 208
+ +++ +R R + F DD+ LVF AN +
Sbjct: 77 STRRVD----------------------------DVRLRALRFFKADPDDFDLVFVANAT 108
Query: 209 SAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKL 268
+A KL+A++ + R Y + +A ++ GAR +A+ N S +
Sbjct: 109 AAIKLVADAM---RDSRQGFWYGYHVDAHTSLV------GARELAAK---GNRCFSSDEE 156
Query: 269 MKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW------MSVAAEKGWHVLLDATAL 322
++ + ++ + LF +P QS + G R W S AA + LLDA +L
Sbjct: 157 VEGWIQSLREAGPESLNLFAYPAQSNLNGRRLPLSWCETIRRRSEAAGGNTYTLLDAASL 216
Query: 323 GSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSG----STSSVSTI 378
S L + PDF + SFYKIFG G L V+KS+ + +V +
Sbjct: 217 VSTSPLDLSDAAAAPDFTVLSFYKIFGF--PDLGALIVRKSAGHIFEQRRFFGGGTVDMV 274
Query: 379 MGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLIL-ISNRARY 437
+ E + + D P SI + S H G + +S+ R+
Sbjct: 275 LTREMQWHAKKQSSIHDRLEDGTLPFHSIIALDSAFAT-----HRRLFGSMENVSSHTRF 329
Query: 438 LINWLANALMNLHHPHSETGIPLVRIY-GPKVMFDR----GPSLAFNVFDWNGTRIDPAL 492
L L + L L H + E + ++Y P +++ GP +AFN+ + +G I +
Sbjct: 330 LAKRLYDKLAALKHSNGER---VCQLYTNPFSDYNKAASQGPIIAFNLRNSHGAWIGKSE 386
Query: 493 VQKLADRHNISLSCGFLQNI-FFSGEYEQERVRVLET-----RSGTN-ETRSG--VSVVT 543
V++LA NI G L N SG +L+ R G + + G V+
Sbjct: 387 VERLATVKNIQFRSGSLCNPGGTSGSLGWTGADLLQQFSAGLRCGDDHDVMDGRPTGVLR 446
Query: 544 AALGCLTNFEDTYRLWAFVSRFLDADFVEK 573
+LG +TN D + FV F +VE+
Sbjct: 447 LSLGAMTNLADINTVIQFVEEF----YVER 472
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 588 | ||||||
| 224053993 | 581 | predicted protein [Populus trichocarpa] | 0.965 | 0.977 | 0.648 | 0.0 | |
| 297742613 | 535 | unnamed protein product [Vitis vinifera] | 0.901 | 0.990 | 0.622 | 0.0 | |
| 255537253 | 649 | molybdopterin cofactor sulfurase, putati | 0.979 | 0.887 | 0.585 | 0.0 | |
| 224074805 | 560 | predicted protein [Populus trichocarpa] | 0.935 | 0.982 | 0.628 | 0.0 | |
| 225426751 | 652 | PREDICTED: uncharacterized protein LOC10 | 0.981 | 0.884 | 0.580 | 0.0 | |
| 225469324 | 654 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.880 | 0.543 | 0.0 | |
| 224134691 | 645 | predicted protein [Populus trichocarpa] | 0.971 | 0.885 | 0.514 | 0.0 | |
| 356534167 | 649 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.875 | 0.527 | 0.0 | |
| 356513685 | 610 | PREDICTED: molybdenum cofactor sulfurase | 0.979 | 0.944 | 0.552 | 1e-180 | |
| 356574465 | 653 | PREDICTED: uncharacterized protein LOC10 | 0.971 | 0.874 | 0.522 | 1e-176 |
| >gi|224053993|ref|XP_002298075.1| predicted protein [Populus trichocarpa] gi|222845333|gb|EEE82880.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/601 (64%), Positives = 468/601 (77%), Gaps = 33/601 (5%)
Query: 1 MLSPCTGEALSEACCRGCCPNPFHGLPLDHHHHPHELEAPKSPRTAAAARHEFKVTTTSS 60
M SPCTGEA S+AC C PF G+P E ++ S TAA++RH+F+V SS
Sbjct: 1 MHSPCTGEA-SQACFHNLCQLPFLGIP--------EPQSSTSITTAASSRHDFEVAMASS 51
Query: 61 LFPNAHFTNHESLPSLQESFANFTKVFPQYLQTDQADRIRAQDYFHLSLNNYVCFDYIGH 120
++PN+ FTNHES PSLQESF+ FTK FP Y QTDQAD+IR Q+Y+HLSL+N+VC DYIGH
Sbjct: 52 MYPNSQFTNHESFPSLQESFSYFTKAFPLYSQTDQADKIREQEYYHLSLSNHVCLDYIGH 111
Query: 121 GLFSYSQMHSCSSNVHSSAASTSSSSPLP--SVQLEPPFFDICYRSVNLNSWLQYGSEES 178
GLFSYSQ S S + A+++SSS PL S LE PFF I Y++ NL+S +QYGS+ES
Sbjct: 112 GLFSYSQQRSYSREA-TVASTSSSSLPLRQYSSSLETPFFGISYKAANLHSQIQYGSQES 170
Query: 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAA 238
ELE KI+KRIM MN+SEDDYT+VFTANQSSAFKLLA+SYPF SN LLTVYDHENEA
Sbjct: 171 ELECKIQKRIMALMNLSEDDYTMVFTANQSSAFKLLADSYPFQSNQNLLTVYDHENEAVK 230
Query: 239 LMIESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGA 298
+MIESSK RGARV SAEF+W +LRIHSGKL++ K ++K+K +RGLFVFPLQS++TGA
Sbjct: 231 IMIESSKNRGARVMSAEFSWKSLRIHSGKLLE----KVRRKRKNRRGLFVFPLQSRMTGA 286
Query: 299 RYSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCL 358
RYSY+WM++A E GWHVLLDA LG KDM+TLGLSLFKPDFLICSF+K+FGENPSGFGCL
Sbjct: 287 RYSYLWMNMARENGWHVLLDACGLGPKDMETLGLSLFKPDFLICSFFKVFGENPSGFGCL 346
Query: 359 FVKKSSASVLSGSTSS--VSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVE 416
FVKKSS+SV+ STS+ V + P S+I E D++ + ++ G S +E
Sbjct: 347 FVKKSSSSVIKDSTSTGLVRLVPARRP--SQISEESANDDTETEE--KAKQDGYS--YLE 400
Query: 417 CKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL 476
C+GLDHAD+LGLI IS RARYLINWL NAL +L HPHSE G PLVRIYGPKV FDRGP++
Sbjct: 401 CRGLDHADSLGLISISTRARYLINWLVNALTSLQHPHSENGHPLVRIYGPKVKFDRGPAV 460
Query: 477 AFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRS---GT- 532
AFNVFDW G +IDPA+VQKLADR+NISLSCGFL +I FS +YE ER ++LETR+ GT
Sbjct: 461 AFNVFDWKGEKIDPAIVQKLADRNNISLSCGFLHHILFSNKYEHEREQILETRTSEGGTV 520
Query: 533 -----NETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDADFVEKERWRYMALNQKTIE 587
++ SG+SVVTAALG LTNFED Y+LWAFVSRFLDADFV+KERWRY ALNQ T+E
Sbjct: 521 LNGKRDKLYSGISVVTAALGFLTNFEDVYKLWAFVSRFLDADFVQKERWRYTALNQMTVE 580
Query: 588 I 588
+
Sbjct: 581 V 581
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742613|emb|CBI34762.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/593 (62%), Positives = 439/593 (74%), Gaps = 63/593 (10%)
Query: 1 MLSPCTGEALSEACCRGCCPNPFHGLPLDHHHHPHELEAPKSPRTAAAARHEFKVTTTSS 60
M SPC E SEAC +GCC G P PH + PK+ +AA +R+ F +TT SS
Sbjct: 1 MHSPCIRET-SEACFQGCCLASLPGFP-----DPHGTD-PKNLSSAAVSRYNFALTTVSS 53
Query: 61 LFPNAHFTNHESLPSLQESFANFTKVFPQYLQTDQADRIRAQDYFHLSLNNYVCFDYIGH 120
LFPN FTNHESLP L ESF++F K +PQY T+QAD+IRAQ+Y+HLS++N+VC DYIGH
Sbjct: 54 LFPNTQFTNHESLPPLDESFSSFNKAYPQYSNTNQADQIRAQEYYHLSMSNHVCLDYIGH 113
Query: 121 GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESEL 180
GLFSYSQ+ PFF+I Y+SVNLNS + YG EESEL
Sbjct: 114 GLFSYSQLQKL------------------------PFFEISYKSVNLNSQILYGGEESEL 149
Query: 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALM 240
ESKIRKRIMDFMNISE DY++VFTANQSSAFKLLA+ YPF SN LLTVYD+ENEA M
Sbjct: 150 ESKIRKRIMDFMNISEADYSMVFTANQSSAFKLLADFYPFQSNQNLLTVYDYENEAVGAM 209
Query: 241 IESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARY 300
I +SKKR ARV SAEF+WPNLRIHS KL K I+ KR KK+RGLFVFPLQS++TGARY
Sbjct: 210 IRASKKRSARVLSAEFSWPNLRIHSAKLKKIILNKR----KKRRGLFVFPLQSRMTGARY 265
Query: 301 SYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFV 360
SY+WMS+A E GWHVLLDA ALG KDM+TLGLSLF+PDFLICSF+K+FG+NPSGFGCLFV
Sbjct: 266 SYLWMSMAQENGWHVLLDACALGPKDMETLGLSLFRPDFLICSFFKVFGKNPSGFGCLFV 325
Query: 361 KKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP-ESSISGV----SSKLV 415
KKSSAS+L ST++VS +GI + L + +S+FP ES+ + + +SKL
Sbjct: 326 KKSSASILKDSTTAVS--VGI---------VSLLPATRRSQFPDESATTDIETEQTSKLK 374
Query: 416 ECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS 475
KGLDHAD+LGLILIS RAR+LINWL NALM+L HPHSE G+PLVRIYGP V FDRGP+
Sbjct: 375 LHKGLDHADSLGLILISLRARFLINWLVNALMSLRHPHSENGLPLVRIYGPNVAFDRGPA 434
Query: 476 LAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNET 535
+AFNVFDW G +++P LVQKLADR NISL L+ I G ++ +++
Sbjct: 435 VAFNVFDWKGEKVEPTLVQKLADRSNISLK---LRTIGVEGTLGNKK---------RDKS 482
Query: 536 RSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDADFVEKERWRYMALNQKTIEI 588
SG+SVV+AALG LTNFED Y LWAFVSRFLDADFVEKERWRY+ALNQKT+E+
Sbjct: 483 SSGISVVSAALGLLTNFEDVYNLWAFVSRFLDADFVEKERWRYVALNQKTVEV 535
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537253|ref|XP_002509693.1| molybdopterin cofactor sulfurase, putative [Ricinus communis] gi|223549592|gb|EEF51080.1| molybdopterin cofactor sulfurase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/661 (58%), Positives = 474/661 (71%), Gaps = 85/661 (12%)
Query: 1 MLSPCTGEALSEACCRGCCPNPFHGLPLDHHHHPHELEAPKSPRTAAAARHEFKVTTTSS 60
M SPC EA SE C GCCP PF G P + + S TAA++R++F+V TSS
Sbjct: 1 MHSPCIREA-SEVCSHGCCPTPFLGFP--------QPQTATSATTAASSRYDFEVAMTSS 51
Query: 61 LFPNAHFTNHESLPSLQESFANFTKVFPQYLQTDQADRIRAQDYFHLSLNNYVCFDYIGH 120
++PN+ FTNHESLPSL ESF+NFTK FPQY TD AD+IRAQ+Y+HLSL+N+VC DYIGH
Sbjct: 52 IYPNSQFTNHESLPSLDESFSNFTKAFPQYALTDLADKIRAQEYYHLSLSNHVCLDYIGH 111
Query: 121 GLFSYSQM--HSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEES 178
GLFSYSQ H +S + +S +++ S S LEPPFFDI RSV LNS LQYG ES
Sbjct: 112 GLFSYSQQASHYQASPI-ASTSTSPPPSTSHSTALEPPFFDIFNRSVTLNSQLQYGGPES 170
Query: 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAA 238
++E+KIR+RI+ FMNISED+YT+VFTANQ+SAFKLLA++YPF S+ +LLT+YD+E+EA
Sbjct: 171 DMENKIRRRIIAFMNISEDEYTVVFTANQTSAFKLLADAYPFQSHRKLLTMYDNESEAVK 230
Query: 239 LMIESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGA 298
+MIESSK++G +V SA+F+WP+LRI SGKL KK+V KRK ++KKKRGLFVFPLQS++TG
Sbjct: 231 VMIESSKQKGGQVFSADFSWPSLRIQSGKLKKKVVSKRKTERKKKRGLFVFPLQSRMTGT 290
Query: 299 RYSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCL 358
RYSY WMS+A E GWH+LLDA ALG K+M+TLGLSLFKPDFLICSF+K+FGENPSGFGCL
Sbjct: 291 RYSYFWMSMAQENGWHILLDACALGPKEMETLGLSLFKPDFLICSFFKVFGENPSGFGCL 350
Query: 359 FVKKSSASVLSGSTSSVSTIMGI-------------EPSFSEIIELE------------- 392
FVKKSSASVL ST++ S +GI E SF +E+E
Sbjct: 351 FVKKSSASVLMNSTTAAS--IGIVRLVPAIGPSQFSEESFVADVEIEPKENLELHNDKIL 408
Query: 393 ------------------TLDESSQS--KFPESSI-----------------SGVSSKLV 415
++E+ ++ K ES I SG + K V
Sbjct: 409 QGMSSKPASGHQMSSRSSEMNETEETTIKQKESEIEELETPPTEFSQFKFNESGGNGKTV 468
Query: 416 -ECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474
E KGL+HAD+LGLILIS RARYLINWL NALM+L HPHSE G PL+RIYGPK+ FDRGP
Sbjct: 469 LEFKGLEHADSLGLILISTRARYLINWLVNALMSLQHPHSENGNPLIRIYGPKIKFDRGP 528
Query: 475 SLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRS-GTN 533
++AFN+FDW G RIDP LVQKLADR+NISLS GFL +I+ ++E++R ++ E + N
Sbjct: 529 AVAFNIFDWKGERIDPVLVQKLADRNNISLSYGFLHHIWLPAKHEEQRGQLSEMGAQNLN 588
Query: 534 ETR------SGVSVVTAALGCLTNFEDTYRLWAFVSRFLDADFVEKERWRYMALNQKTIE 587
E R SG+S +TA LG LTNFED YRLWAFVSRFLDADFVEKERWRY ALNQKTIE
Sbjct: 589 EKREKQKPHSGISAITATLGFLTNFEDVYRLWAFVSRFLDADFVEKERWRYTALNQKTIE 648
Query: 588 I 588
+
Sbjct: 649 V 649
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224074805|ref|XP_002304460.1| predicted protein [Populus trichocarpa] gi|222841892|gb|EEE79439.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/598 (62%), Positives = 449/598 (75%), Gaps = 48/598 (8%)
Query: 1 MLSPCTGEALSEACCRGCCPNPFHGLPLDHHHHPHELEAPKSPRTAAAARHEFKVTTTSS 60
M SPCT EA S+AC C P E ++P S T +A+RH +V S
Sbjct: 1 MRSPCTREA-SQACFHNFC------------QLPSEPQSPTSITTVSASRHVLEVAMGSL 47
Query: 61 LFPNAHFTNHESLPSLQESFANFTKVFPQYLQTDQADRIRAQDYFHLSLNNYVCFDYIGH 120
++PN+ FTNHESLPSLQESF+NFTK FPQY QTDQAD+IR Q+Y+HLSL+N+VCFDYIGH
Sbjct: 48 IYPNSQFTNHESLPSLQESFSNFTKAFPQYSQTDQADKIREQEYYHLSLSNHVCFDYIGH 107
Query: 121 GLFSYSQMHSCSSNV-HSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESE 179
GLFSYSQ S S +S +S S S S LEPPFFDI Y++ NL+S +Q+G + SE
Sbjct: 108 GLFSYSQQRSHSWEAPFASTSSASPPSRQYSSGLEPPFFDISYKAANLHSQIQHGGQMSE 167
Query: 180 LESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAAL 239
LE +++KRIM MN+SEDDYT+VFTANQ SAFKL+A+SYPF SN LLTVYD+ENEA +
Sbjct: 168 LEYEMQKRIMALMNLSEDDYTMVFTANQLSAFKLVADSYPFQSNQNLLTVYDYENEAVKV 227
Query: 240 MIESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGAR 299
MIESSK +GARV SAEF+WP+LR+ SGKL+KK ++K+K KRGLFVFPLQS++TGAR
Sbjct: 228 MIESSKNKGARVMSAEFSWPSLRLKSGKLLKK----VRRKRKNKRGLFVFPLQSRMTGAR 283
Query: 300 YSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLF 359
YSY+WM++A E GWHVLLDA LG KDM+TLGLSLFKPDFL+CSF+K+FGENPSGF CLF
Sbjct: 284 YSYLWMTMAQENGWHVLLDACGLGPKDMETLGLSLFKPDFLVCSFFKVFGENPSGFCCLF 343
Query: 360 VKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKG 419
VKKSS+S+L ST + E S S+II + G +EC+G
Sbjct: 344 VKKSSSSILKDST-----VASFESSKSQII----------------AGYGSGHSHLECRG 382
Query: 420 LDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFN 479
LDHAD+LGLILIS RARYLINWL NALM+L HPHSE PLVRIYGPKV FDRGP++AFN
Sbjct: 383 LDHADSLGLILISTRARYLINWLVNALMSLQHPHSENRNPLVRIYGPKVKFDRGPAVAFN 442
Query: 480 VFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRS--------G 531
VFDW G +IDP++VQKLADR+NISLS GFL +I+F EYE ER +++ETR+ G
Sbjct: 443 VFDWKGEKIDPSIVQKLADRNNISLSKGFLFHIWFPDEYEHEREQIIETRTSKGGKVLNG 502
Query: 532 TNET-RSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDADFVEKERWRYMALNQKTIEI 588
T E SG+SVVTA+LG LTNFED YRLWAFVSRFLDADFVEKERWRY ALNQ TIE+
Sbjct: 503 TREKLHSGISVVTASLGFLTNFEDIYRLWAFVSRFLDADFVEKERWRYTALNQMTIEV 560
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426751|ref|XP_002275855.1| PREDICTED: uncharacterized protein LOC100265017 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/663 (58%), Positives = 465/663 (70%), Gaps = 86/663 (12%)
Query: 1 MLSPCTGEALSEACCRGCCPNPFHGLPLDHHHHPHELEAPKSPRTAAAARHEFKVTTTSS 60
M SPC E SEAC +GCC G P PH + PK+ +AA +R+ F +TT SS
Sbjct: 1 MHSPCIRET-SEACFQGCCLASLPGFP-----DPHGTD-PKNLSSAAVSRYNFALTTVSS 53
Query: 61 LFPNAHFTNHESLPSLQESFANFTKVFPQYLQTDQADRIRAQDYFHLSLNNYVCFDYIGH 120
LFPN FTNHESLP L ESF++F K +PQY T+QAD+IRAQ+Y+HLS++N+VC DYIGH
Sbjct: 54 LFPNTQFTNHESLPPLDESFSSFNKAYPQYSNTNQADQIRAQEYYHLSMSNHVCLDYIGH 113
Query: 121 GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESEL 180
GLFSYSQ+ S ++S+SS+ L LE PFF+I Y+SVNLNS + YG EESEL
Sbjct: 114 GLFSYSQLQSHHMTAPVPSSSSSSAPSLNFSSLELPFFEISYKSVNLNSQILYGGEESEL 173
Query: 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALM 240
ESKIRKRIMDFMNISE DY++VFTANQSSAFKLLA+ YPF SN LLTVYD+ENEA M
Sbjct: 174 ESKIRKRIMDFMNISEADYSMVFTANQSSAFKLLADFYPFQSNQNLLTVYDYENEAVGAM 233
Query: 241 IESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARY 300
I +SKKR ARV SAEF+WPNLRIHS KL K I+ KR KK+RGLFVFPLQS++TGARY
Sbjct: 234 IRASKKRSARVLSAEFSWPNLRIHSAKLKKIILNKR----KKRRGLFVFPLQSRMTGARY 289
Query: 301 SYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFV 360
SY+WMS+A E GWHVLLDA ALG KDM+TLGLSLF+PDFLICSF+K+FG+NPSGFGCLFV
Sbjct: 290 SYLWMSMAQENGWHVLLDACALGPKDMETLGLSLFRPDFLICSFFKVFGKNPSGFGCLFV 349
Query: 361 KKSSASVLSGSTSSVST-IMGIEPSF--------SEIIELET------------------ 393
KKSSAS+L ST++VS I+ + P+ S ++ET
Sbjct: 350 KKSSASILKDSTTAVSVGIVSLLPATRRSQFPDESATTDIETEQTSKLKLHKGELPAASS 409
Query: 394 ------LDESSQSKFPESSISGV--------SSKLVECK----------------GLDHA 423
+ + S F IS V SS++VE + G
Sbjct: 410 LSGPLPVQKISNETFESYEISDVNFKQKGSSSSEIVELEMPLDIPQSLNKDSSVNGYSQI 469
Query: 424 DALGL--------ILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS 475
+ GL ILIS RAR+LINWL NALM+L HPHSE G+PLVRIYGP V FDRGP+
Sbjct: 470 ECRGLDHADSLGLILISLRARFLINWLVNALMSLRHPHSENGLPLVRIYGPNVAFDRGPA 529
Query: 476 LAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRS----G 531
+AFNVFDW G +++P LVQKLADR NISLS GFLQ+I+FS +YE+E+ ++LE R+ G
Sbjct: 530 VAFNVFDWKGEKVEPTLVQKLADRSNISLSHGFLQHIWFSDKYEEEKEKILELRTIGVEG 589
Query: 532 T------NETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDADFVEKERWRYMALNQKT 585
T +++ SG+SVV+AALG LTNFED Y LWAFVSRFLDADFVEKERWRY+ALNQKT
Sbjct: 590 TLGNKKRDKSSSGISVVSAALGLLTNFEDVYNLWAFVSRFLDADFVEKERWRYVALNQKT 649
Query: 586 IEI 588
+E+
Sbjct: 650 VEV 652
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225469324|ref|XP_002267983.1| PREDICTED: uncharacterized protein LOC100248586 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/666 (54%), Positives = 451/666 (67%), Gaps = 90/666 (13%)
Query: 1 MLSPCTGEALSEACCRGCCPNPFHGLPLDHHHHPHELEAPKSPRTAAAARHEFKVTTTSS 60
M S C+G+A ++ C GCCP P +PL + P S TAA R +F TT +
Sbjct: 1 MHSLCSGDA-TQVCLHGCCPRP---VPLPEPQK----KVPSSRSTAADCRRDFAATTAAC 52
Query: 61 LFPNAHFTNHESLPSLQESFANFTKVFPQYLQTDQADRIRAQDYFHLSLNNYVCFDYIGH 120
FPN FTNHESLPSLQESF F + +PQY +TDQADRIRAQ+Y HL L+N++C DYIG
Sbjct: 53 FFPNTQFTNHESLPSLQESFTLFEEAYPQYSETDQADRIRAQEYHHLLLSNHICLDYIGI 112
Query: 121 GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEP-PFFDICYRSVNLNSWLQYGSEESE 179
GLFS+ Q+ +S+ ++ ASTSS S LPS Q P F I Y+SVNL S LQYG +ES
Sbjct: 113 GLFSHCQIQIKTSS-PTTIASTSSPSNLPSPQSSNIPLFGISYKSVNLKSLLQYGGQESA 171
Query: 180 LESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAAL 239
LES ++++IM F+NISE+DY +VFTAN++SAFKLLAESYPF S+ +LLTVYD+E+EA
Sbjct: 172 LESAMKRKIMGFLNISENDYCMVFTANRTSAFKLLAESYPFQSSQKLLTVYDYESEAVEA 231
Query: 240 MIESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGAR 299
M+E+S+KRGARV SAEF+WP LR++SGKL K +V + KKKK RGLFVFPLQS++TGAR
Sbjct: 232 MVETSEKRGARVMSAEFSWPRLRVNSGKLRKMVV---RNKKKKNRGLFVFPLQSRMTGAR 288
Query: 300 YSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLF 359
Y Y+WM++A E GWHVLLDA ALG KDMDT GLSLF+PDFLICSFYK+FGENP+GFGCLF
Sbjct: 289 YHYLWMNIAQENGWHVLLDACALGPKDMDTFGLSLFRPDFLICSFYKVFGENPTGFGCLF 348
Query: 360 VKKSSASVLSGST------------------------------------------SSVST 377
VKKS+ +L ST SS S
Sbjct: 349 VKKSTVPILEASTSTGIVNLVPAKKLFWLPADSSGTDTEPEQTSKFEFQEELHTSSSFSG 408
Query: 378 IMGIEPSFS--------EIIELETLDESSQSKFPESS-----------------ISGVSS 412
+ I+ + S E EL + +++ PE+S + G
Sbjct: 409 PLSIQKTLSGRFEYEQGETSELPKTEGTAKHDRPETSKVIEMEKPADFVQQNTKVRGKEG 468
Query: 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR 472
+EC+GLDH D+LGL+LIS RARYLINWL NAL LHHP++E G PLVRIYGP + F+R
Sbjct: 469 LEIECRGLDHVDSLGLVLISRRARYLINWLVNALTKLHHPNTEEGSPLVRIYGPNIKFER 528
Query: 473 GPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRS-- 530
GP+LAFNVFDW G +++P L+QKLADR NISLS GFL +++FS +YE E+ RV+E R
Sbjct: 529 GPALAFNVFDWKGEKVEPILLQKLADRSNISLSYGFLHHLWFSDKYEAEKQRVIERRETE 588
Query: 531 ----GTNETRS----GVSVVTAALGCLTNFEDTYRLWAFVSRFLDADFVEKERWRYMALN 582
N+ + G++VVTAALG LTNFED YRLWAFV++FLDADFVEKERWRY ALN
Sbjct: 589 AKGMAQNKRKGKDDLGITVVTAALGFLTNFEDIYRLWAFVAQFLDADFVEKERWRYTALN 648
Query: 583 QKTIEI 588
QKTIE+
Sbjct: 649 QKTIEV 654
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134691|ref|XP_002321884.1| predicted protein [Populus trichocarpa] gi|222868880|gb|EEF06011.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/661 (51%), Positives = 437/661 (66%), Gaps = 90/661 (13%)
Query: 2 LSPCTGEALSEACCRGCCPNPFHGL--PLDHHHHPHELEAPKSPRTAAAARHEFKVTTTS 59
+ P + +S+AC GCCP+P G PL+ ++ P+S T+A R F TTTS
Sbjct: 1 MQPRCLKEVSQACLSGCCPSPILGFSEPLN------KISKPRS--TSATCRQNFAKTTTS 52
Query: 60 SLFPNAHFTNHESLPSLQESFANFTKVFPQYLQTDQADRIRAQDYFHLSLNNYVCFDYIG 119
S+FPN HFTN ESLPSLQESF F +V+PQY T Q D+ RAQ+Y HL+L+N+ C DYIG
Sbjct: 53 SIFPNTHFTNPESLPSLQESFNGFIEVYPQYSDTYQVDQTRAQEYNHLALSNHTCLDYIG 112
Query: 120 HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESE 179
GLFSY+Q+ S +++S P + PFF + Y++ NL + L +G +ES
Sbjct: 113 IGLFSYAQLQKLDSEKQILPSASS-----PPQNMHIPFFSVSYKTGNLKTQLLHGGQESA 167
Query: 180 LESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAAL 239
LES ++KRIM F+NISE+DY++VFTAN++SAFKLLAESYPF ++ +LLTVYD+E+EA
Sbjct: 168 LESAMKKRIMSFLNISENDYSMVFTANRTSAFKLLAESYPFKTSRKLLTVYDYESEAVEA 227
Query: 240 MIESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGAR 299
MI SS K+GA+V SAEF+WP LRI S KL +K+V + K+KK KRGLFVFPL S++TGAR
Sbjct: 228 MINSSDKKGAQVMSAEFSWPRLRIQSAKL-RKMVEMKSKRKKTKRGLFVFPLHSRMTGAR 286
Query: 300 YSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLF 359
Y Y+WM++A E GWH+L+DA ALG KDMD+ GLSL +PDFLICSFYKIFGENPSGFGCLF
Sbjct: 287 YPYLWMNIAKENGWHILIDACALGPKDMDSFGLSLIRPDFLICSFYKIFGENPSGFGCLF 346
Query: 360 VKKSSASVLSGSTSS--------------VSTIMGIEPSFSEIIEL----ETLDESS--- 398
VKKS+ +L S S+ V G + F + +L + LD S+
Sbjct: 347 VKKSTVPLLEDSVSAGMVSLVPANKMFRLVDEFSGTDSDFEHLSKLGLQEDELDSSNSFS 406
Query: 399 --------------QSKFPESSISGVSSKL--------------------------VECK 418
Q + ES +G ++K +EC+
Sbjct: 407 GPISSQTMHSGRVEQGETSESQTTGTTAKQKVSKTSDIVESGKSAEVMRQENGILEIECR 466
Query: 419 GLDHADALGLILISNRARYLINWLANALMNLHHPHSETG-IPLVRIYGPKVMFDRGPSLA 477
GLD D+LGL ISNRAR LINW+ NAL+ L HP+ TG IPLVRIYGP+V FDRGP+LA
Sbjct: 467 GLDQVDSLGLTRISNRARCLINWMVNALLKLKHPN--TGEIPLVRIYGPRVKFDRGPALA 524
Query: 478 FNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETR------SG 531
FN+FDW G +++ LVQKLADR NISLS GFL +I FS EYE+E+ VLE R +
Sbjct: 525 FNLFDWKGEKVEAPLVQKLADRSNISLSYGFLHHISFSDEYEEEKATVLEKRVNGAKGTV 584
Query: 532 TNETRS----GVSVVTAALGCLTNFEDTYRLWAFVSRFLDADFVEKERWRYMALNQKTIE 587
TN+ + G++VVT ALG L NFEDTYR WAF+++FLDADFVEK +WRY ALNQKT+E
Sbjct: 585 TNKRKEKADFGITVVTVALGVLANFEDTYRFWAFIAQFLDADFVEKAKWRYTALNQKTVE 644
Query: 588 I 588
+
Sbjct: 645 V 645
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534167|ref|XP_003535629.1| PREDICTED: uncharacterized protein LOC100814630 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/650 (52%), Positives = 436/650 (67%), Gaps = 82/650 (12%)
Query: 11 SEACCRGCCPNPFHGLPLDHHHHPHELEAPKSPRTAAA-ARHEFKVTTTSSLFPNAHFTN 69
S AC +GCCP P A PR ++A RH F TT SS+FPN FTN
Sbjct: 10 SLACPQGCCPTSLLFNPPPPPPQSQNTTA--KPRNSSAECRHSFAATTASSIFPNTKFTN 67
Query: 70 HESLPSLQESFANFTKVFPQYLQTDQADRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMH 129
HESLPSL ESF+ F KV+PQY +TDQ D +RA++Y+HLS +N C DYIG GLFSY Q
Sbjct: 68 HESLPSLHESFSEFKKVYPQYSETDQVDHVRAKEYYHLSFSNQSCLDYIGIGLFSYYQRQ 127
Query: 130 SCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189
+ H ++ + +SS P PFF I Y++ NL + L +G +ESE ES +R+RIM
Sbjct: 128 ----HHHDTSKTQLASSSTPQYSDNIPFFSISYKTGNLKTLLLHGGQESEFESAMRRRIM 183
Query: 190 DFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGA 249
F+NIS++DY +VFTAN++SAFKL+A+SYPF S+ +LLTVYD+E+EA MI S+KRGA
Sbjct: 184 KFLNISDNDYFMVFTANRTSAFKLVADSYPFQSSKKLLTVYDYESEAVEAMISCSEKRGA 243
Query: 250 RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWMSVAA 309
+ SAEF+WP LRI S KL +KI+ ++KK KKKRGLFVFPL S+VTGARY+Y+WMS+A
Sbjct: 244 KAMSAEFSWPRLRIRSTKL-RKIIVSKRKKNKKKRGLFVFPLHSRVTGARYAYLWMSIAQ 302
Query: 310 EKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLS 369
E GWHVLLDA ALG KDMD+ GLSLF+PDFLICSFYK+FGENPSGFGCLFVKKS+ S L
Sbjct: 303 ENGWHVLLDACALGPKDMDSFGLSLFQPDFLICSFYKVFGENPSGFGCLFVKKSAISTLE 362
Query: 370 GST------------------------------------SSVSTIMG---------IEPS 384
S+ SS+S+ G +E
Sbjct: 363 SSSCAGIVNLVPERLLLQPSEDKHSSKQKPLSILQEQELSSLSSFSGRIQTSQAIKVEQE 422
Query: 385 FSEI---------------IELETLDESSQSKFPESSISGVSSKL-VECKGLDHADALGL 428
SE+ +E + ES QSK ++ SG + +EC+ LD D+LGL
Sbjct: 423 LSELQIIAAPAKPKEGSGSVEAKGPVESLQSK--KAQDSGENGGFNIECRCLDQVDSLGL 480
Query: 429 ILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488
I+I+NR RYLINWL N++M L HP++E G+PLV+IYGPKV FDRGP+LAFNVFDW G ++
Sbjct: 481 IMITNRTRYLINWLVNSMMKLKHPNAE-GVPLVKIYGPKVKFDRGPALAFNVFDWKGEKV 539
Query: 489 DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSG------TNETRS----G 538
+P LVQKLADR+NISLS GFL +I+F+ +Y +++ +VL+T+ G TN+ + G
Sbjct: 540 EPVLVQKLADRNNISLSYGFLHHIWFADKYAEDKGKVLQTKEGRVQGVTTNKKKDRDELG 599
Query: 539 VSVVTAALGCLTNFEDTYRLWAFVSRFLDADFVEKERWRYMALNQKTIEI 588
V+VVTAAL L NFED Y+LW FV+RFLDADFVEKERWRY ALNQKTIE+
Sbjct: 600 VTVVTAALSFLANFEDVYKLWTFVARFLDADFVEKERWRYTALNQKTIEV 649
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513685|ref|XP_003525541.1| PREDICTED: molybdenum cofactor sulfurase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 341/617 (55%), Positives = 427/617 (69%), Gaps = 41/617 (6%)
Query: 3 SPCTGEALSEACCRGCCPNPFHGLPLDHHHHPHELEAPKSPRTAAAARHEFKVTTTSSLF 62
S EA S+ C GC P+P H PK A ++ +F T+S+L
Sbjct: 4 SRAEAEAASQPCFNGCFPSPLLASERSHR----TTSKPKVNNDATSSHDDFVAATSSTLH 59
Query: 63 PNAHFTNHESLPSLQESFANFTKVFPQYLQTDQADRIRAQDYFHLSLNNYVCFDYIGHGL 122
P+ +FTNHESLPSLQ+S+ +FTKVFPQ+ T + DRIRA++Y HL+ ++ CFDY G+GL
Sbjct: 60 PHTNFTNHESLPSLQDSYISFTKVFPQFSTTSEVDRIRAREYHHLNHSSNSCFDYTGYGL 119
Query: 123 FSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182
FSY Q S ++SSSS LP + FFDI Y+SVNL S + YG ESELES
Sbjct: 120 FSYDQQQRSYS---YPTVASSSSSSLPYFTSDASFFDISYKSVNLQSQVLYGGHESELES 176
Query: 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIE 242
+IRKRIM FMN+SE +YTLVF AN+ SAFK++A+S+ F +N +LLTVYDH +EA +MIE
Sbjct: 177 RIRKRIMSFMNVSEAEYTLVFIANEVSAFKIVADSFQFQNNRQLLTVYDHSSEALDVMIE 236
Query: 243 SSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSY 302
S KK+G V SAEF+WPNL + KL KK+V K K++K+K GLFVFPL S+VTGA YSY
Sbjct: 237 SCKKQGVHVLSAEFSWPNLGMEWRKL-KKMVTKNKREKRKG-GLFVFPLHSRVTGAPYSY 294
Query: 303 MWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKK 362
+WMS+A E GW VLLD L K+M TLG+SLFKPDF++CSFYK+FGENPSGFGCLFVKK
Sbjct: 295 VWMSMAQEHGWRVLLDVCGLKPKEMGTLGMSLFKPDFMVCSFYKVFGENPSGFGCLFVKK 354
Query: 363 SSASVLSGSTSSVST-IMGIEPSFSE------IIELETLDESSQSKFPESSISGVSSK-- 413
SS S L +++S I+ + P+F +IE ET + Q + E SI SS
Sbjct: 355 SSVSALKDPGNAISIGIISLVPAFRHETNEQVVIETET-EHHQQVEIEELSIPFDSSTDR 413
Query: 414 ----------LVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRI 463
+ C+GLDHAD++GL+LIS+R +YL+NWL NALM+L HPH E I L+RI
Sbjct: 414 NRLGTKNEGLEIHCRGLDHADSVGLLLISSRTKYLVNWLVNALMSLKHPHHEDSISLIRI 473
Query: 464 YGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQER- 522
YGPK+ RGP++AFN+FDW G +IDPALVQKLADR+NISL +L+NI FS + E+ER
Sbjct: 474 YGPKISSLRGPAVAFNIFDWKGEKIDPALVQKLADRNNISLGSSYLRNIRFSDKNEEERH 533
Query: 523 VRVLETRSG--------TNETRS---GVSVVTAALGCLTNFEDTYRLWAFVSRFLDADFV 571
LETR G + +TRS G+ VVTAALG LTNFED YRLWAF+SRFLDADFV
Sbjct: 534 YWALETRGGSEVEGLGLSKKTRSQEPGIFVVTAALGLLTNFEDIYRLWAFLSRFLDADFV 593
Query: 572 EKERWRYMALNQKTIEI 588
EKERWRYMALNQKTIE+
Sbjct: 594 EKERWRYMALNQKTIEV 610
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574465|ref|XP_003555367.1| PREDICTED: uncharacterized protein LOC100820534 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1612), Expect = e-176, Method: Compositional matrix adjust.
Identities = 340/651 (52%), Positives = 427/651 (65%), Gaps = 80/651 (12%)
Query: 11 SEACCRGCCPNP--FHGLPLDHHHHPHELEAPKSPRTAAAARHEFKVTTTSSLFPNAHFT 68
S AC GCCP F+ P + P++ ++A RH F TT SS+FPN FT
Sbjct: 10 SLACPHGCCPTSLLFNPPPPPPLQTQNTTTKPRN--SSAECRHSFAATTASSIFPNTKFT 67
Query: 69 NHESLPSLQESFANFTKVFPQYLQTDQADRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQM 128
NHESLPSL ESF+ F KV+PQY +TDQ D +R ++Y+HLS +N C DYIG GLFSY Q
Sbjct: 68 NHESLPSLHESFSEFKKVYPQYSETDQVDHVRDKEYYHLSFSNQSCLDYIGIGLFSYYQR 127
Query: 129 HSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRI 188
+ AS+S+ P PFF I Y++ NL + L +G +ESE ES +R+RI
Sbjct: 128 QHHHDTSKTQLASSSTPPSPPQYSDNIPFFSISYKTGNLKTLLLHGGQESEFESAMRRRI 187
Query: 189 MDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRG 248
M F+NISE+DY +VFTAN++SAFKL+A+SYPF S+ +LLTVYD+E+EA MI S++RG
Sbjct: 188 MKFLNISENDYFMVFTANRTSAFKLVADSYPFQSSKKLLTVYDYESEAVEAMISCSERRG 247
Query: 249 ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWMSVA 308
A+ SAEF+WP LRI S KL K IV K+KKKKKRGLFVFPL S+VTGARY Y+WMS+A
Sbjct: 248 AKAMSAEFSWPRLRIQSTKLRKMIVS--KRKKKKKRGLFVFPLHSRVTGARYPYLWMSIA 305
Query: 309 AEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVL 368
E GWHVL+DA ALG KDMD+ GLSLF+PDFLICSFYK+FGENPSGFGCLFVKKS+ + L
Sbjct: 306 QENGWHVLIDACALGPKDMDSFGLSLFQPDFLICSFYKVFGENPSGFGCLFVKKSAITTL 365
Query: 369 SGSTSSVSTIMGIEPSFSEIIELETLDESSQ---SKFPESSISGVS-------------- 411
+SS + I+ + P + E D S Q S E +S +S
Sbjct: 366 --ESSSCAGIVNLVPDRLLLHPSEDKDSSKQKPLSILQEQDLSSLSSFSGRIQTSQAIKV 423
Query: 412 -------------------SKLVECKG-------------------------LDHADALG 427
S VE KG LD D+LG
Sbjct: 424 EQELSELQIIAAPAKPKQGSGRVEAKGPVESLQSKKAQDGSENGGFNIDCRCLDQVDSLG 483
Query: 428 LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTR 487
LI+I+NR RYLINWL N++M L HP++E G+PLV+IYGPKV FDRGP+LAFNVFDW G +
Sbjct: 484 LIMITNRTRYLINWLVNSMMKLKHPNAE-GVPLVKIYGPKVKFDRGPALAFNVFDWKGEK 542
Query: 488 IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSG------TNETRS---- 537
++P LVQKLADR+NISLS GFL +I+F+ +Y +++ +VL+T+ G TN+ +
Sbjct: 543 VEPVLVQKLADRNNISLSYGFLHHIWFADKYAEDKGKVLQTKEGRVQGVITNKKKDRDKL 602
Query: 538 GVSVVTAALGCLTNFEDTYRLWAFVSRFLDADFVEKERWRYMALNQKTIEI 588
GV+VVTAAL L NFED Y+LW FV+RFLDADFVEKERWRY ALNQKTIE+
Sbjct: 603 GVTVVTAALSFLANFEDVYKLWTFVARFLDADFVEKERWRYTALNQKTIEV 653
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 588 | ||||||
| TAIR|locus:2166523 | 570 | AT5G51920 [Arabidopsis thalian | 0.940 | 0.970 | 0.448 | 2.3e-126 | |
| TAIR|locus:2127253 | 559 | AT4G22980 "AT4G22980" [Arabido | 0.404 | 0.425 | 0.483 | 7.3e-111 | |
| TAIR|locus:2158088 | 870 | AT5G66950 [Arabidopsis thalian | 0.348 | 0.235 | 0.519 | 4.7e-105 | |
| TAIR|locus:2115179 | 896 | AT4G37100 [Arabidopsis thalian | 0.348 | 0.228 | 0.495 | 1.8e-93 | |
| TAIR|locus:2046837 | 895 | AT2G23520 [Arabidopsis thalian | 0.348 | 0.229 | 0.485 | 4.8e-91 | |
| UNIPROTKB|F1SAI5 | 889 | LOC100621611 "Uncharacterized | 0.362 | 0.239 | 0.305 | 1.9e-18 | |
| UNIPROTKB|F1N3A9 | 849 | MOCOS "Molybdenum cofactor sul | 0.362 | 0.250 | 0.301 | 9.3e-18 | |
| UNIPROTKB|G3N1I0 | 882 | MOCOS "Molybdenum cofactor sul | 0.362 | 0.241 | 0.301 | 1e-17 | |
| UNIPROTKB|Q9N0E7 | 882 | MOCOS "Molybdenum cofactor sul | 0.362 | 0.241 | 0.301 | 1e-17 | |
| MGI|MGI:1915841 | 862 | Mocos "molybdenum cofactor sul | 0.365 | 0.249 | 0.301 | 8.4e-16 |
| TAIR|locus:2166523 AT5G51920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1241 (441.9 bits), Expect = 2.3e-126, P = 2.3e-126
Identities = 260/580 (44%), Positives = 352/580 (60%)
Query: 1 MLSPCTGEALSEACCRGCCPNXXXXXXXXXXXXXXXXEAPKS-PR-TAAAARHEFKVTTT 58
M P G++ C GC P S P T+A R F TT
Sbjct: 1 MHQPFPGDSSPPNCLHGC------FSSSPFHGTTSSEHPPHSTPTVTSATLRRNFAQTTV 54
Query: 59 SSLFPNAHFTNHESLPSLQESFANFTKVFPQYLQTDQADRIRAQDYFHLSLNNYVCFDYI 118
S++FP+ FT+ SLPS QESF++F + +P Y T + DR+R+ YFHL L++Y C DYI
Sbjct: 55 STIFPDTEFTDPNSLPSHQESFSDFIQAYPNYSDTYKIDRLRSDHYFHLGLSHYTCLDYI 114
Query: 119 GHGLFSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPPFFDICYRSVNLNS-WLQYGSEE 177
G GL+SY E PFF + + NL L G +E
Sbjct: 115 GIGLYSYSQLLNYDPSTYQISSSLS----------ESPFFSVSPKIGNLKEKLLNDGGQE 164
Query: 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAA 237
+E E +++RIM F+ ISE+DY++VFTAN++SAF+L+AESYPF S +LLTVYD+E+EA
Sbjct: 165 TEFEYSMKRRIMGFLKISEEDYSMVFTANRTSAFRLVAESYPFNSKRKLLTVYDYESEAV 224
Query: 238 ALMIESSKKRGARVSSAEFAWPNLRIHSGXXXXXXXXXXXXXXXXXRGLFVFPLQSKVTG 297
+ + S+KRGA+V++AEF+WP L++ S +G++VFPL S+VTG
Sbjct: 225 SEINRVSEKRGAKVAAAEFSWPRLKLCSSKLRKLVTAGKNGSKTKKKGIYVFPLHSRVTG 284
Query: 298 ARYSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGC 357
+RY Y+WMSVA E GWHV++DA LG KDMD+ GLS++ PDF++CSFYK+FGENPSGFGC
Sbjct: 285 SRYPYLWMSVAQENGWHVMIDACGLGPKDMDSFGLSIYNPDFMVCSFYKVFGENPSGFGC 344
Query: 358 LFVKKXXXXXXXXXXXXXXXIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVEC 417
LFVKK ++ + P+ + I L L+ + E + S SS VE
Sbjct: 345 LFVKKSTISILESSTGPG--MINLVPTDNPI-SLHALEINRTQTDSEETYSFSSS--VEY 399
Query: 418 KGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA 477
KGLDH D+LGL+ NR+R LINWL +AL L H T LV+IYGPKV F+RGP++A
Sbjct: 400 KGLDHVDSLGLVATGNRSRCLINWLVSALYKLKH---STTSRLVKIYGPKVNFNRGPAVA 456
Query: 478 FNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRS 537
FN+F+ G +I+P +VQKLA+ NISL FL+NI F +YE + RV E + +
Sbjct: 457 FNLFNHKGEKIEPFIVQKLAECSNISLGKSFLKNILFQEDYEGVKDRVFEKKRNRDVDEP 516
Query: 538 GVSVVTAALGCLTNFEDTYRLWAFVSRFLDADFVEKERWR 577
+SV+TAALG L NFED Y+LW FV+RFLD++FV+KE R
Sbjct: 517 RISVLTAALGFLANFEDVYKLWIFVARFLDSEFVDKESVR 556
|
|
| TAIR|locus:2127253 AT4G22980 "AT4G22980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 552 (199.4 bits), Expect = 7.3e-111, Sum P(3) = 7.3e-111
Identities = 119/246 (48%), Positives = 156/246 (63%)
Query: 176 EESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENE 235
EES +S+IRKRI FMN+ E +Y ++ T ++SSAFK++AE Y F +NP LLTVY++E+E
Sbjct: 144 EESRFQSRIRKRITSFMNLEESEYHMILTQDRSSAFKIVAELYSFKTNPNLLTVYNYEDE 203
Query: 236 AAALMIESSKKRGARVSSAEFAWPNLRIHSGXXXXXXXXXXXXXXXXXRGLFVFPLQSKV 295
A MI S+K+G + SAEF+WP+ I S RGLFVFPLQS V
Sbjct: 204 AVEEMIRISEKKGIKPQSAEFSWPSTEILS---EKLKRRITRSKRRGKRGLFVFPLQSLV 260
Query: 296 TGARYSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGEN-PSG 354
TGA YSY WMS+A E WHVLLD +ALGSKDM+TLGLSLF+PDFLICSF ++ G++ PSG
Sbjct: 261 TGASYSYSWMSLARESEWHVLLDTSALGSKDMETLGLSLFQPDFLICSFTEVLGQDDPSG 320
Query: 355 FGCLFVKKXXXXXXXXXXXXXXXIMGI--EPSFSEIIELET-LDESSQSKFPE-SSISGV 410
FGCLFVKK + + EPS+ E + +E + + + S
Sbjct: 321 FGCLFVKKSSSTALSEEPTNPENLTAVKAEPSWKWKTEYQAGYNEITPVDHEDHKAASTS 380
Query: 411 SSKLVE 416
SS++VE
Sbjct: 381 SSEIVE 386
|
|
| TAIR|locus:2158088 AT5G66950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 575 (207.5 bits), Expect = 4.7e-105, Sum P(4) = 4.7e-105
Identities = 107/206 (51%), Positives = 150/206 (72%)
Query: 158 FDICYRSVNLNSWLQYG-SEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAE 216
F + S NL++ YG +E+ +E I+ RIMD++NI E++Y LVFT ++ SAFKLLAE
Sbjct: 171 FSLSEISANLSNHAIYGGAEKGSIEHDIKIRIMDYLNIPENEYGLVFTVSRGSAFKLLAE 230
Query: 217 SYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGXXXXXXXXXX 276
SYPF++N +LLT++DHE+++ + M + +K++GA+V SA F WP LR+ S
Sbjct: 231 SYPFHTNKKLLTMFDHESQSVSWMGQCAKEKGAKVGSAWFKWPTLRLCSMDLKKEILSKK 290
Query: 277 XXXXXXXRGLFVFPLQSKVTGARYSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFK 336
GLFVFP+QS+VTG++YSY WM++A + WHVLLDA ALG KDMD+LGLSLF+
Sbjct: 291 KRKKDSATGLFVFPVQSRVTGSKYSYQWMALAQQNNWHVLLDAGALGPKDMDSLGLSLFR 350
Query: 337 PDFLICSFYKIFGENPSGFGCLFVKK 362
PDF+I SFY++FG +P+GFGCL +KK
Sbjct: 351 PDFIITSFYRVFGYDPTGFGCLLIKK 376
|
|
| TAIR|locus:2115179 AT4G37100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 550 (198.7 bits), Expect = 1.8e-93, Sum P(3) = 1.8e-93
Identities = 102/206 (49%), Positives = 145/206 (70%)
Query: 158 FDICYRSVNLNSWLQYGSEES-ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAE 216
F + + NL++ YG ES +E I+ RIMD++NI E++Y LVFT ++ SAF+LLAE
Sbjct: 177 FSLSEITANLSNHALYGGAESGTVEHDIKTRIMDYLNIPENEYGLVFTVSRGSAFRLLAE 236
Query: 217 SYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGXXXXXXXXXX 276
SYPF SN RLLT++DHE+++ M ++++++GA+ +A F WP L++ S
Sbjct: 237 SYPFQSNKRLLTMFDHESQSVNWMAQTAREKGAKAYNAWFKWPTLKLCSTDLKKRLSYKK 296
Query: 277 XXXXXXXRGLFVFPLQSKVTGARYSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFK 336
GLFVFP QS+VTG +YSY WM++A + WHVLLDA +LG KDMD+LGLSLF+
Sbjct: 297 RKKKDSAVGLFVFPAQSRVTGTKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR 356
Query: 337 PDFLICSFYKIFGENPSGFGCLFVKK 362
P+F+I SFY++FG +P+GFGCL +KK
Sbjct: 357 PEFIITSFYRVFGHDPTGFGCLLIKK 382
|
|
| TAIR|locus:2046837 AT2G23520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 4.8e-91, Sum P(3) = 4.8e-91
Identities = 100/206 (48%), Positives = 145/206 (70%)
Query: 158 FDICYRSVNLNSWLQYGSEE-SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAE 216
F + + NL++ YG E +E ++ RIMD++NI E +Y LVFT ++ SAF+LLAE
Sbjct: 173 FSLSEITANLSNHALYGGAEIGTVEHDLKTRIMDYLNIPESEYGLVFTGSRGSAFRLLAE 232
Query: 217 SYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGXXXXXXXXXX 276
SYPF++N RLLT++DHE+++ M ++++++GA+ +A F WP L++ S
Sbjct: 233 SYPFHTNKRLLTMFDHESQSVNWMAQTAREKGAKAYNAWFKWPTLKLCSTDLKKRLSHKK 292
Query: 277 XXXXXXXRGLFVFPLQSKVTGARYSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFK 336
GLFVFP QS+VTG++YSY WM++A + WHVLLDA +LG KDMD+LGLSLF+
Sbjct: 293 RKKKDSAVGLFVFPAQSRVTGSKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFR 352
Query: 337 PDFLICSFYKIFGENPSGFGCLFVKK 362
P+F+I SFYK+FG +P+GFGCL +KK
Sbjct: 353 PEFIITSFYKVFGHDPTGFGCLLIKK 378
|
|
| UNIPROTKB|F1SAI5 LOC100621611 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 205 (77.2 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 74/242 (30%), Positives = 110/242 (45%)
Query: 286 LFVFPLQSKVTGARYSYMWMS---------VAAEKGWHVLLDATA-LGSKDMDTLGLSLF 335
LF +P QS +G+RY W+ V+A W+VLLDA A +G+ +D LS+
Sbjct: 198 LFCYPAQSNFSGSRYPLSWIGEVKSGQMRPVSAPGKWYVLLDAAAYVGTSPLD---LSVH 254
Query: 336 KPDFLICSFYKIFGENPSGFGCLFVKKXXXXXXXXXXXXXXXIMGIEPSFSEIIELETLD 395
+ DF+ SFYKIFG P+G G L V G ++ +
Sbjct: 255 QADFVPISFYKIFGF-PTGLGALLVNNRTAPLLRKTYFGG----GTAAAYLAGEDFYIPR 309
Query: 396 ESSQSKFPESSISGVSSKLVECK-GLDHADAL--GLILISNRARYLINWLANALMNLHHP 452
ES +F + +IS + ++ K G D + L G+ I L + +L L +P
Sbjct: 310 ESVAERFEDGTISFLD--VIALKHGFDALENLTGGMECIRQHTFTLARYTYASLTALRYP 367
Query: 453 HSETGIPLVRIYGPKVMFD---RGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFL 509
+ G P+VRIY +GP ++FNV D +G I + V K+A HNI + G
Sbjct: 368 N---GAPVVRIYSDSEFSSPEVQGPVISFNVLDDDGNIIGYSQVDKMASLHNIHVRTGCF 424
Query: 510 QN 511
N
Sbjct: 425 CN 426
|
|
| UNIPROTKB|F1N3A9 MOCOS "Molybdenum cofactor sulfurase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 202 (76.2 bits), Expect = 9.3e-18, Sum P(2) = 9.3e-18
Identities = 73/242 (30%), Positives = 109/242 (45%)
Query: 286 LFVFPLQSKVTGARYSYMWMSV--------AAEKG-WHVLLDATA-LGSKDMDTLGLSLF 335
LF +P QS +G RY W+ A+ G W VLLDA A +G+ +D LS+
Sbjct: 165 LFCYPAQSNFSGTRYPLSWIGEVKSGRRRPASRPGKWFVLLDAAAFVGTSPLD---LSVH 221
Query: 336 KPDFLICSFYKIFGENPSGFGCLFVKKXXXXXXXXXXXXXXXIMGIEPSFSEIIELETLD 395
+ DF+ SFYKIFG P+G G L V G ++ +
Sbjct: 222 QADFVPISFYKIFGF-PTGLGALLVNNRLAALLRKTYFGG----GTAAAYLAGDDFYVPR 276
Query: 396 ESSQSKFPESSISGVSSKLVECK-GLDHADAL--GLILISNRARYLINWLANALMNLHHP 452
ES +F + +IS + ++ K G D + L G+ I L + AL +L +P
Sbjct: 277 ESVAERFEDGTISFLD--VIALKHGFDALERLTGGMESIRQHTFTLAQYTYTALSSLRYP 334
Query: 453 HSETGIPLVRIYGPKVMFD---RGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFL 509
+ G P+V+IY +GP ++FNV D +G + + V K+A HNI + G
Sbjct: 335 N---GAPVVQIYSDSDFSSPEVQGPVISFNVLDDHGNVVGYSQVDKMASLHNIHVRTGCF 391
Query: 510 QN 511
N
Sbjct: 392 CN 393
|
|
| UNIPROTKB|G3N1I0 MOCOS "Molybdenum cofactor sulfurase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 202 (76.2 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 73/242 (30%), Positives = 109/242 (45%)
Query: 286 LFVFPLQSKVTGARYSYMWMSV--------AAEKG-WHVLLDATA-LGSKDMDTLGLSLF 335
LF +P QS +G RY W+ A+ G W VLLDA A +G+ +D LS+
Sbjct: 198 LFCYPAQSNFSGTRYPLSWIGEVKSGRRRPASRPGKWFVLLDAAAFVGTSPLD---LSVH 254
Query: 336 KPDFLICSFYKIFGENPSGFGCLFVKKXXXXXXXXXXXXXXXIMGIEPSFSEIIELETLD 395
+ DF+ SFYKIFG P+G G L V G ++ +
Sbjct: 255 QADFVPISFYKIFGF-PTGLGALLVNNRLAALLRKTYFGG----GTAAAYLAGDDFYVPR 309
Query: 396 ESSQSKFPESSISGVSSKLVECK-GLDHADAL--GLILISNRARYLINWLANALMNLHHP 452
ES +F + +IS + ++ K G D + L G+ I L + AL +L +P
Sbjct: 310 ESVAERFEDGTISFLD--VIALKHGFDALERLTGGMESIRQHTFTLAQYTYTALSSLRYP 367
Query: 453 HSETGIPLVRIYGPKVMFD---RGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFL 509
+ G P+V+IY +GP ++FNV D +G + + V K+A HNI + G
Sbjct: 368 N---GAPVVQIYSDSDFSSPEVQGPVISFNVLDDHGNVVGYSQVDKMASLHNIHVRTGCF 424
Query: 510 QN 511
N
Sbjct: 425 CN 426
|
|
| UNIPROTKB|Q9N0E7 MOCOS "Molybdenum cofactor sulfurase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 202 (76.2 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 73/242 (30%), Positives = 109/242 (45%)
Query: 286 LFVFPLQSKVTGARYSYMWMSV--------AAEKG-WHVLLDATA-LGSKDMDTLGLSLF 335
LF +P QS +G RY W+ A+ G W VLLDA A +G+ +D LS+
Sbjct: 198 LFCYPAQSNFSGTRYPLSWIGEVKSGRRRPASRPGKWFVLLDAAAFVGTSPLD---LSVH 254
Query: 336 KPDFLICSFYKIFGENPSGFGCLFVKKXXXXXXXXXXXXXXXIMGIEPSFSEIIELETLD 395
+ DF+ SFYKIFG P+G G L V G ++ +
Sbjct: 255 QADFVPISFYKIFGF-PTGLGALLVNNRLAALLRKTYFGG----GTAAAYLAGDDFYVPR 309
Query: 396 ESSQSKFPESSISGVSSKLVECK-GLDHADAL--GLILISNRARYLINWLANALMNLHHP 452
ES +F + +IS + ++ K G D + L G+ I L + AL +L +P
Sbjct: 310 ESVAERFEDGTISFLD--VIALKHGFDALERLTGGMESIRQHTFTLAQYTYTALSSLRYP 367
Query: 453 HSETGIPLVRIYGPKVMFD---RGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFL 509
+ G P+V+IY +GP ++FNV D +G + + V K+A HNI + G
Sbjct: 368 N---GAPVVQIYSDSDFSSPEVQGPVISFNVLDDHGNVVGYSQVDKMASLHNIHVRTGCF 424
Query: 510 QN 511
N
Sbjct: 425 CN 426
|
|
| MGI|MGI:1915841 Mocos "molybdenum cofactor sulfurase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 192 (72.6 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 73/242 (30%), Positives = 105/242 (43%)
Query: 286 LFVFPLQSKVTGARYSYMWMS---------VAAEKGWHVLLDATALGSKDMDTLGLSLFK 336
LF +P QS +G RY W+ V A W VLLDA + S L LS +
Sbjct: 197 LFCYPAQSNFSGTRYPLSWVEEVKSGRRSPVNAPGKWFVLLDAASYVSTS--PLDLSAHQ 254
Query: 337 PDFLICSFYKIFGENPSGFGCLFVKKXXXXXXXXXXXXXXXIMGIEPSFSEIIELETLDE 396
DF+ SFYKIFG P+G G L V K G ++ +
Sbjct: 255 ADFIPISFYKIFGL-PTGLGALLVNKHVAPLLRKGYFGG----GTAAAYLAGEDFYVPRS 309
Query: 397 SSQSKFPESSISGVSSKLVECK-GLDHADAL--GLILISNRARYLINWLANALMNLHHPH 453
S +F + +IS + ++ K G D + L G++ I L+ + +AL +L + +
Sbjct: 310 SVAERFEDGTISFLD--VIALKHGFDALEHLTGGMVNIQQHTFALVQYTHSALSSLRYLN 367
Query: 454 SETGIPLVRIYGPKVMFD---RGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQ 510
G P+VRIY +GP + FNV D G I + V K+A +NI L G
Sbjct: 368 ---GAPVVRIYSDSEFSSPDVQGPIINFNVLDDGGKIIGYSQVDKMASLYNIHLRTGCFC 424
Query: 511 NI 512
N+
Sbjct: 425 NL 426
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| gw1.I.9187.1 | hypothetical protein (570 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 588 | |||
| PLN02724 | 805 | PLN02724, PLN02724, Molybdenum cofactor sulfurase | 4e-25 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 2e-19 | |
| TIGR01979 | 403 | TIGR01979, sufS, cysteine desulfurases, SufSfamily | 8e-08 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 1e-06 | |
| TIGR01976 | 397 | TIGR01976, am_tr_V_VC1184, cysteine desulfurase fa | 3e-05 |
| >gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 4e-25
Identities = 115/453 (25%), Positives = 193/453 (42%), Gaps = 90/453 (19%)
Query: 97 DRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSC----SSNVHSSAASTSSSSPLPSVQ 152
D +RA ++ L Y+ D+ G L+S SQ+ + SSNV+ + S S SS
Sbjct: 22 DELRATEFARLKGVVYL--DHAGATLYSESQLEAALADFSSNVYGNPHSQSDSS------ 73
Query: 153 LEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFK 212
S+ R++++++ N DY VFT+ ++A K
Sbjct: 74 ----------------------MRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALK 111
Query: 213 LLAESYPFYSNPRLLTVYDHENEAAALMI-ESSKKRGARVSSAEF-AWPNLRIHSG---K 267
L+ E++P+ S Y EN + L I E + ++GA + + N +S
Sbjct: 112 LVGETFPWSSESHFC--YTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVV 169
Query: 268 LMKKIVGKRKKKKKKKR-------GLFVFPLQSKVTGARYSY---------MWMSVAAEK 311
+ + + +R K +KR LF FP + +GA++ + +
Sbjct: 170 VKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSG 229
Query: 312 GWHVLLDATALGSKDMDTL--GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVL- 368
W VLLDA +K T LS + DF++ SFYKIFG P+G G L V++ +A +L
Sbjct: 230 RWMVLLDA----AKGCGTSPPDLSRYPADFVVVSFYKIFGY-PTGLGALLVRRDAAKLLK 284
Query: 369 ----SGSTSSVSTIMGIEPSFSEIIELETLD--ESSQSKFPESSISGVSSKLVECKGLDH 422
G T + S I +++ + E + +F + +IS +S + G
Sbjct: 285 KKYFGGGTVAAS-----------IADIDFVKRRERVEQRFEDGTISFLSIAALR-HGFKL 332
Query: 423 ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVM----FDRGPSLAF 478
+ L + I+ L +++AN+L NL H G P+ +YG +GP + F
Sbjct: 333 LNRLTISAIAMHTWALTHYVANSLRNLKH---GNGAPVCVLYGNHTFKLEFHIQGPIVTF 389
Query: 479 NVFDWNGTRIDPALVQKLADRHNISLSCGFLQN 511
N+ +G+ + V+KLA I L G N
Sbjct: 390 NLKRADGSWVGHREVEKLASLSGIQLRTGCFCN 422
|
Length = 805 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 2e-19
Identities = 93/396 (23%), Positives = 138/396 (34%), Gaps = 62/396 (15%)
Query: 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPR---LLTVYDHE-N 234
+L R+ + F+N D +VFT + A L+A P +++ +H N
Sbjct: 66 DLYEAAREAVARFLNADSSD-EIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSN 124
Query: 235 EAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSK 294
+ +K+ GA+V + + L K I K K L S
Sbjct: 125 IVPWQEL--AKRTGAKVRVIPLD-DDGLLDLDALEKLITPKTK--------LVALSHVSN 173
Query: 295 VTGARYSYMWMS-VAAEKGWHVLLDAT-ALGSKDMDTLGLSLFKPDFLICSFYKIFGENP 352
VTG ++ +A E G VL+DA A G +D + DFL S +K P
Sbjct: 174 VTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPID---VQELGCDFLAFSGHKWLL-GP 229
Query: 353 SGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSS 412
+G G L+V+K L I S E + L L ++ P I+G
Sbjct: 230 TGIGVLYVRKELLEELEPFLGGGGMIEY--VSRDEGVTLAELPLRFEAGTPN--IAGA-- 283
Query: 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR 472
+ LD+ +G+ I R L +L L +P V IYGP DR
Sbjct: 284 -IGLAAALDYLLEIGMEAIEAHERELTEYLLEGLS---------ELPGVEIYGPPDA-DR 332
Query: 473 GPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGT 532
G ++FNV I P V L D I++ G +
Sbjct: 333 GGIVSFNV-----KGIHPHDVATLLDEKGIAVRAG-----------HHCAQPLHRLLGVD 376
Query: 533 NETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568
R A+L ED RL + + L
Sbjct: 377 ATIR-------ASLHLYNTEEDVDRLLEALKKALAL 405
|
Length = 405 |
| >gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 69/329 (20%), Positives = 130/329 (39%), Gaps = 72/329 (21%)
Query: 175 SEES-ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRL------- 226
S + E +R+++ F+N + D+ +VFT + + L+A S+ + L
Sbjct: 57 SVRATEAYEAVREKVAKFINAASDE-EIVFTRGTTESINLVAYSW---GDSNLKAGDEIV 112
Query: 227 LTVYDHE-NEAAALMIESSKKRGARVSSAEFAW----PNLRIHSGKLMKKIVGKRKKKKK 281
++ +H N ++ +++ GA + + + + L K + K K
Sbjct: 113 ISEMEHHANIVPWQLL--AERTGATLK-----FIPLDDDGTLDLDDLEKLLTEKTK---- 161
Query: 282 KKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK---DMDTLGLSLFKP 337
L S V G + +A + G VL+D D+ L
Sbjct: 162 ----LVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDC----- 212
Query: 338 DFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSF---SEIIELETL 394
DF + S +K++G P+G G L+ K+ ++ P F E+I +
Sbjct: 213 DFYVFSGHKMYG--PTGIGVLYGKE--------------ELLEQMPPFLGGGEMIAEVSF 256
Query: 395 DESSQSKFP---ESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHH 451
+E++ ++ P E+ ++ + +D+ +A+GL I L + L
Sbjct: 257 EETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGE--- 313
Query: 452 PHSETGIPLVRIYGPKVMFDRGPSLAFNV 480
IP +RIYGP+ DRG ++FNV
Sbjct: 314 ------IPGLRIYGPRDAEDRGGIISFNV 336
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 85/353 (24%), Positives = 144/353 (40%), Gaps = 70/353 (19%)
Query: 173 YGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPR---LLTV 229
G E ++ + R+++ +F+N D ++FT+ + A L+A S P L+T
Sbjct: 37 LGKEATQAYEEAREKVAEFINA-PSDEEIIFTSGTTEAINLVAISLGRSLKPGDEILVTE 95
Query: 230 YDHE-NEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKL----MKKIVGKRKKKKKKKR 284
+H N + K+ GA V +G L ++K++ R K
Sbjct: 96 MEHHANLVPWQELA--KRTGATVRVIPVDP------NGLLDLDALEKLLTPRTK------ 141
Query: 285 GLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLD-ATALGSK--DMDTLGLSLFKPDFL 340
L S VTG + +A E G V++D A A+G + D+ LG+ DFL
Sbjct: 142 -LVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAVGHRPIDVQALGV-----DFL 195
Query: 341 ICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSF--SEIIELETLDESS 398
S +K++G P+G G L+ ++ L P +I+ +L E++
Sbjct: 196 AFSGHKLYG--PTGIGVLYGRRDLLEKL-------------PPLLGGGGMIDTVSLQETT 240
Query: 399 QSKFPESSISG---VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSE 455
+ P +G ++ + LD+ +GL I R L +L L+
Sbjct: 241 FADAPSKFEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHERELAAYLYERLLA------- 293
Query: 456 TGIPLVRIYGPKVMFDRGPSL-AFNVFDWNGTRIDPALVQKLADRHNISLSCG 507
IP +R+YGP +R PS+ +FN + P V L D I++ G
Sbjct: 294 --IPGIRLYGPPA--ERRPSIISFNF-----PGVHPHDVATLLDERGIAVRSG 337
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 79/358 (22%), Positives = 125/358 (34%), Gaps = 66/358 (18%)
Query: 161 CYRSVNLNSWLQYGSEESELESKIRKR--IMDFMNISEDDYTLVFTANQSSAFKLLAESY 218
N N Y S + R + D +N + +VF AN +S LL+ +
Sbjct: 40 ALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPE--VVFGANATSLTFLLSRAI 97
Query: 219 PFYSNPR---LLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGK 275
P ++T DHE + + + + GA+V A +H L ++
Sbjct: 98 SRRWGPGDEVIVTRLDHEANISPWLQAAERA-GAKVKWARVDEATGELHPDDL-ASLLSP 155
Query: 276 RKKKKKKKRGLFVFPLQSKVTGARYSYMWMSVAAEK-GWHVLLDATALGSK---DMDTLG 331
R + L S G+ ++ G V++DA D+ G
Sbjct: 156 RTR-------LVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATG 208
Query: 332 LSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIEL 391
DFL CS YK FG + G L+ + L + S G E EL
Sbjct: 209 A-----DFLTCSAYKFFGPH---MGILWGRPELLMNLPPYKLTFSYDTGPER-----FEL 255
Query: 392 ETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARY---------LINWL 442
T ++GV + + GL A G S R R N L
Sbjct: 256 GT--------PQYELLAGVVAAVDYLAGLG-ESANG----SRRERLVASFQAIDAYENRL 302
Query: 443 ANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPA-LVQKLADR 499
A L+ + +P V +YG + R P+++F V + P +V++LAD+
Sbjct: 303 AEYLLV-----GLSDLPGVTLYGVARLAARVPTVSFTV-----HGLPPQRVVRRLADQ 350
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase [Unknown function, Enzymes of unknown specificity]. Length = 397 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 588 | |||
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 100.0 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 100.0 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 100.0 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 100.0 | |
| PLN02651 | 364 | cysteine desulfurase | 100.0 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 100.0 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 100.0 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 100.0 | |
| KOG2142 | 728 | consensus Molybdenum cofactor sulfurase [Coenzyme | 100.0 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 100.0 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 100.0 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 100.0 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 100.0 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 100.0 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 100.0 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 100.0 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 100.0 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 100.0 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 100.0 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 100.0 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 100.0 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 100.0 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 100.0 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.98 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.97 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.97 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.97 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.97 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.97 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.96 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.96 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.96 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.96 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.95 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.95 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.95 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.94 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.94 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.94 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.94 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.94 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.94 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.94 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.93 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.93 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.93 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.93 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.92 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.92 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.92 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.92 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.91 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.91 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.91 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.91 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.9 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.9 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.9 | |
| KOG2142 | 728 | consensus Molybdenum cofactor sulfurase [Coenzyme | 99.9 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.9 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.9 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.9 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.89 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.89 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.89 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.89 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.89 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.88 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.88 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.88 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.88 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.88 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.88 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.88 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.88 | |
| PLN02721 | 353 | threonine aldolase | 99.88 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.88 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.88 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.87 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.87 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.87 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.87 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.87 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.87 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.87 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.87 | |
| PRK07324 | 373 | transaminase; Validated | 99.87 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.87 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.87 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.87 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.87 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.87 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.87 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.87 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.86 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.86 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.86 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.86 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.86 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.86 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.86 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.86 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.86 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.86 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.86 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.86 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.86 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.86 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.86 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.86 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.86 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.86 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.86 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.86 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.86 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.86 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.86 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.85 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.85 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.85 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.85 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.85 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.85 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.85 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.85 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.85 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.85 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.85 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.85 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.85 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.85 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.85 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 99.85 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.85 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.85 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.84 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.84 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.84 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.84 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.84 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.84 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.84 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.84 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.84 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.84 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.84 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.84 | |
| PLN02263 | 470 | serine decarboxylase | 99.84 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.84 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.84 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.84 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.83 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.83 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.83 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.83 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.83 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.83 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.83 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.83 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.83 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.83 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.83 | |
| PLN02187 | 462 | rooty/superroot1 | 99.82 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.82 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.82 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.82 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.82 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.82 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.82 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.82 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.81 | |
| PLN02656 | 409 | tyrosine transaminase | 99.81 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.81 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.81 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.81 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.81 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.81 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.81 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.81 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.81 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.81 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.81 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.81 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.81 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.8 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.8 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.8 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.8 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.8 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.8 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.8 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.8 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.8 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.8 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.8 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.8 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.79 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.79 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.79 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.79 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.79 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.79 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.79 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.79 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.79 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.78 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.78 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.78 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.78 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.78 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.78 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.77 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.77 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.77 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.77 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.77 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.76 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.76 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.76 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.76 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.76 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.75 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.75 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.75 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.74 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.74 | |
| PLN02231 | 534 | alanine transaminase | 99.74 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.74 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.74 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.74 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.73 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.73 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.73 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.72 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.72 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.72 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.71 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.71 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.71 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.71 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.7 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.7 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.7 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 99.69 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.69 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.69 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.68 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.68 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.66 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.66 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.66 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.66 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.66 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.65 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.64 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.64 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.64 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.64 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.64 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.63 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.63 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.62 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.62 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.62 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.62 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.61 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.6 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.59 | |
| PLN02368 | 407 | alanine transaminase | 99.59 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.57 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.57 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.57 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.57 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 99.55 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.54 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.53 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.53 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.51 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.51 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.47 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.46 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.46 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.45 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.45 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.44 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.43 | |
| PLN02397 | 423 | aspartate transaminase | 99.43 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.43 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.42 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.42 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.41 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.41 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.4 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.4 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.4 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.38 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.36 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.36 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.36 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.36 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.36 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.35 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.35 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.34 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.33 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.33 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.33 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.31 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.31 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.31 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.31 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.31 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.3 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.3 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.28 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.28 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.28 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 99.28 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.28 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.27 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.27 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.27 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.26 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.26 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.26 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.26 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.25 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.24 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.24 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.23 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.23 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.22 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.2 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.2 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.2 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.18 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.17 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.17 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.17 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.16 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.16 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.16 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.16 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.15 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.14 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.14 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.14 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.12 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.12 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.11 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 99.1 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.08 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.08 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.07 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.06 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.02 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.0 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 98.98 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.97 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 98.97 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 98.94 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.93 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 98.93 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 98.88 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 98.87 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 98.77 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 98.73 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 98.72 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 98.72 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.69 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 98.67 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 98.58 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 98.57 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 98.49 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.37 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.34 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.14 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.04 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.02 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 98.01 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 97.97 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 96.84 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 95.84 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 95.78 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 94.5 |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-59 Score=496.64 Aligned_cols=392 Identities=24% Similarity=0.299 Sum_probs=329.6
Q ss_pred hHHHHHhhhccCCCCC---CeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCccccccccccccccc
Q 037063 95 QADRIRAQDYFHLSLN---NYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWL 171 (588)
Q Consensus 95 ~~~~iR~~~f~~l~~~---~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~ 171 (588)
++..+|+ +||.|... +.+|||++++++.|..|++++.++.. ..++|+|.. ....
T Consensus 4 ~~~~~r~-~fp~l~~~~~~~~vylD~aa~~~~p~~V~~a~~~~~~-~~~an~~r~------------------~~~~--- 60 (405)
T COG0520 4 DVAAVRA-DFPALKREVGKPLVYLDNAATSQKPQAVLDAVAEYYR-RYNANVHRG------------------AHTL--- 60 (405)
T ss_pred ChHHHHh-hCHHHhhccCCCeEEecCcccccCCHHHHHHHHHHHH-hhcCCcCcc------------------cchH---
Confidence 4456775 58877422 47999999999999999999876653 345665421 1011
Q ss_pred ccCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--CCCCCe-EEEcCCCchhHHHHHHHHHHhcC
Q 037063 172 QYGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--FYSNPR-LLTVYDHENEAAALMIESSKKRG 248 (588)
Q Consensus 172 ~~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--~~~gd~-ll~~~e~~s~~~~~~~~~a~~~G 248 (588)
+.+..+.++++|+.+++++|+++ .++|+||+|+|+|+++++.++. +++||+ |++..|||+|.++| ..++++.|
T Consensus 61 --~~~~t~~~e~aRe~va~~~~a~~-~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw-~~~~~~~G 136 (405)
T COG0520 61 --AEEATDLYEAAREAVARFLNADS-SDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPW-QELAKRTG 136 (405)
T ss_pred --HHHHHHHHHHHHHHHHHHhCCCC-CCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHH-HHHHHhcC
Confidence 12247899999999999999986 2359999999999999999997 799999 56899999999999 68889999
Q ss_pred CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCC
Q 037063 249 ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDM 327 (588)
Q Consensus 249 ~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~ 327 (588)
++|+++|++ +++.++.+++++.++ ++|+||+++|+||.||.+.|+++| ++||++|++|+||++|++| .
T Consensus 137 a~v~~i~~~-~~g~~~~~~~~~~i~--------~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~--h 205 (405)
T COG0520 137 AKVRVIPLD-DDGLLDLDALEKLIT--------PKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAG--H 205 (405)
T ss_pred cEEEEEecC-CCCCcCHHHHHHhcC--------CCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccC--c
Confidence 999999999 899999999999888 899999999999999999999999 9999999999999999998 5
Q ss_pred CCCCCCCCCCcEEEeccCc-cCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 328 DTLGLSLFKPDFLICSFYK-IFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 328 ~~l~l~~~~~D~vv~S~~K-~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
.++|+..+.+||+++|+|| ++| |+|+|+||+|+++++.+.|...|| +++..+.... ...+...+ .+| |.||++
T Consensus 206 ~~idv~~l~~Df~afsgHKwl~g--P~GiGvLy~r~~~l~~l~P~~~gg-~~~~~~~~~~-~~~~~~~p-~rf-e~gTpn 279 (405)
T COG0520 206 LPIDVQELGCDFLAFSGHKWLLG--PTGIGVLYVRKELLEELEPFLGGG-GMIEYVSRDE-GVTLAELP-LRF-EAGTPN 279 (405)
T ss_pred cCCCchhcCCCEEEEcccccccC--CCceEEEEEchHHHhhcCCcccCC-Cceeeecccc-cccccCcc-hhh-ccCCch
Confidence 6677777779999999999 666 999999999999999998888775 6655443211 11121222 288 999999
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGT 486 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~ 486 (588)
+.++ .++.+|+++++++|+++|.+|.+.|.+++.+.|+++ |++++|+|.. ..|+++++|++.+
T Consensus 280 ~~~~---i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~---------~~v~i~g~~~-~~r~~~vsF~v~~---- 342 (405)
T COG0520 280 IAGA---IGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSEL---------PGVEIYGPPD-ADRGGIVSFNVKG---- 342 (405)
T ss_pred HHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC---------CCeEEecCCc-ccCceEEEEEeCC----
Confidence 9997 789999999999999999999999999999999984 8899999876 6789999999998
Q ss_pred CcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCcc-EEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 487 RIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVS-VVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 487 ~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~-~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
+++.++.+.|+++||.+|.|++|... +.+. .+.. .+|+|+++|||+||||+|+++|+++
T Consensus 343 -~~~~dv~~~L~~~gI~vr~g~~ca~p------------~~~~-------~~~~~~iR~S~~~YNt~edid~l~~aL~~~ 402 (405)
T COG0520 343 -IHPHDVATLLDEKGIAVRAGHHCAQP------------LHRL-------LGVDATIRASLHLYNTEEDVDRLLEALKKA 402 (405)
T ss_pred -CCHHHHHHHHHhCCeEEEeccccccH------------HHHh-------cCCCCceEEEEeecCCHHHHHHHHHHHHHH
Confidence 67999999999999999999999632 2222 3332 6999999999999999999999987
Q ss_pred hh
Q 037063 566 LD 567 (588)
Q Consensus 566 l~ 567 (588)
++
T Consensus 403 ~~ 404 (405)
T COG0520 403 LA 404 (405)
T ss_pred hh
Confidence 64
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-59 Score=537.75 Aligned_cols=446 Identities=24% Similarity=0.383 Sum_probs=342.6
Q ss_pred HHHHHhC-CCCCC---chhHHHHHhhhccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCC
Q 037063 81 ANFTKVF-PQYLQ---TDQADRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPP 156 (588)
Q Consensus 81 ~~f~~~~-p~y~~---~~~~~~iR~~~f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~ 156 (588)
..|+.+| |+|+. ...++.+|+.+||.| .+.+||||||++++++.++++..+.+....++|||+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~R~~~fp~l--~~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~--------- 70 (805)
T PLN02724 2 ESFLKEFGGYYGYPDGPKPIDELRATEFARL--KGVVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQS--------- 70 (805)
T ss_pred hhHHhhhcccCCcccchhhHHHHHHHHhhhc--CCCEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCc---------
Confidence 4577766 44444 346999998889999 67999999999999887777765555455778886421
Q ss_pred cccccccccccccccccCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchh
Q 037063 157 FFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENE 235 (588)
Q Consensus 157 ~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~ 235 (588)
.. +....+.++++|++||+++|+++++++|+||+|+|+|+++++.+++|++||+|++ ..+|++
T Consensus 71 ----------~~-----s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~s- 134 (805)
T PLN02724 71 ----------DS-----SMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNS- 134 (805)
T ss_pred ----------ch-----hhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccc-
Confidence 01 1234788999999999999998777789999999999999999999999999665 455554
Q ss_pred HHHHHHHHHHhcCCEEEEEeccC-------CCCccCH--HHHHHHHhhh--ccccCCCcceEEEEeCCCCCCCccCCHHH
Q 037063 236 AAALMIESSKKRGARVSSAEFAW-------PNLRIHS--GKLMKKIVGK--RKKKKKKKRGLFVFPLQSKVTGARYSYMW 304 (588)
Q Consensus 236 ~~~~~~~~a~~~G~~v~~v~~~~-------~~~~i~~--e~l~~~i~~~--~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~ 304 (588)
.+.| .++++++|++++.++++. ..+.++. ++|++.++.. ......++|+||+++|++|.||.++|+++
T Consensus 135 vl~~-~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~ 213 (805)
T PLN02724 135 VLGI-REYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDL 213 (805)
T ss_pred hHHH-HHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHH
Confidence 5566 578888999999998862 1233433 5566654200 00111256799999999999999999999
Q ss_pred HHHHHHc---------CcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCC
Q 037063 305 MSVAAEK---------GWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSV 375 (588)
Q Consensus 305 I~~a~~~---------g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~ 375 (588)
|+.+++. +|+|+||++|++| ..++|+..+++||+++|+|||+|. |.|+|+||+|+++++.|.|.+.||
T Consensus 214 i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g--~~piDv~~~~~Dfl~~S~HK~~Gg-P~G~G~L~vr~~~~~~l~p~~~GG 290 (805)
T PLN02724 214 VKLIKDNQHSNFSKSGRWMVLLDAAKGCG--TSPPDLSRYPADFVVVSFYKIFGY-PTGLGALLVRRDAAKLLKKKYFGG 290 (805)
T ss_pred HHHHHHhcccccccCcceEEEeehhhhcC--CCCCChhhcCCCEEEEecceeccC-CCCceEEEEehhhhhhhcCCccCC
Confidence 8545542 4799999999998 567788878899999999999995 999999999999988899888775
Q ss_pred CceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCC
Q 037063 376 STIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSE 455 (588)
Q Consensus 376 ~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~ 455 (588)
|++.......+..........+| |.||+|+.++ +++.+||+++.++|+++|.+|+..|++++++.|++++|.+
T Consensus 291 -g~~~~~~~~~~~~~~~~~~~~rf-E~GT~n~~~i---~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~-- 363 (805)
T PLN02724 291 -GTVAASIADIDFVKRRERVEQRF-EDGTISFLSI---AALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGN-- 363 (805)
T ss_pred -CceEEEecccceeeccccHHHHh-cCCCcchhHH---HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCC--
Confidence 45432211100000000111378 9999999997 7889999999999999999999999999999999998876
Q ss_pred CCCCeEEEeCCCC----CCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHH----HHHHHh
Q 037063 456 TGIPLVRIYGPKV----MFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQE----RVRVLE 527 (588)
Q Consensus 456 ~g~~~v~i~~p~~----~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~----~~~~l~ 527 (588)
|.|+|+||++.. ...|+++|+|++.+.+|..+.+.++.++++++||.+|+||+|+++.+..+++. ....+.
T Consensus 364 -g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~ 442 (805)
T PLN02724 364 -GAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFE 442 (805)
T ss_pred -CCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhh
Confidence 678999999751 23589999999999999999999999999999999999999999877643321 122233
Q ss_pred hhcCCCCC---cCC--ccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 528 TRSGTNET---RSG--VSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 528 ~~~~~~~~---~~g--~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
.++.|++. ..+ .+.||+|||+|||+|||++|+++|+++
T Consensus 443 ~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~ 485 (805)
T PLN02724 443 AGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISS 485 (805)
T ss_pred cCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHH
Confidence 44455432 112 149999999999999999999998873
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-50 Score=410.75 Aligned_cols=370 Identities=16% Similarity=0.152 Sum_probs=306.2
Q ss_pred eeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHH
Q 037063 112 YVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDF 191 (588)
Q Consensus 112 ~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~ 191 (588)
++||||++++++.+.++++|..++.. .++||+|. | .+|.++.++++++|+.||++
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~~~-~fgNPsS~---------------------H---~~G~~A~~~ve~AR~~iA~l 56 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTE-VFGNPSSL---------------------H---SFGREARKAVEEAREQIAKL 56 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHHHh-hcCCccch---------------------h---HhHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999877754 48999542 2 24667789999999999999
Q ss_pred hCCCCCCceEEEecCHHHHHHHHHHh--CCCC---CCCeE-EEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCH
Q 037063 192 MNISEDDYTLVFTANQSSAFKLLAES--YPFY---SNPRL-LTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHS 265 (588)
Q Consensus 192 lga~~~e~~vvft~g~T~al~lv~~s--~~~~---~gd~l-l~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~ 265 (588)
+|+++++ |+||+|+|++.|+++.+ +..+ .|.+| ++..||++ ....++.+ +..|.+|.++|++ .+|.+++
T Consensus 57 lga~~~e--IiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~a-Vl~~~~~L-e~~g~~Vtyl~V~-~~G~v~~ 131 (386)
T COG1104 57 LGADPEE--IIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPA-VLNTCRYL-ERQGFEVTYLPVD-SNGLVDL 131 (386)
T ss_pred hCCCCCe--EEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHH-HHHHHHHH-HhcCCeEEEeCCC-CCCeEcH
Confidence 9999855 99999999999999988 4332 35665 57889997 55554444 7889999999999 7999999
Q ss_pred HHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEecc
Q 037063 266 GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSF 344 (588)
Q Consensus 266 e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~ 344 (588)
++|+++|+ ++|.||++.+++|.+|+++|+++| ++|+++|+++++|++|.++ -.++++....+|++.+|.
T Consensus 132 e~L~~al~--------~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~G--kipi~~~~~~vD~ls~Sa 201 (386)
T COG1104 132 EQLEEALR--------PDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVG--KIPIDLEELGVDLLSFSA 201 (386)
T ss_pred HHHHHhcC--------CCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcC--ceeccccccCcceEEeeh
Confidence 99999999 889999999999999999999999 9999999999999999998 356666666799999999
Q ss_pred CccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHH
Q 037063 345 YKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHAD 424 (588)
Q Consensus 345 ~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~ 424 (588)
||+.| |+|+|+||+|+.. ++.|...|| |+- + .+ +.||.|++++ +++..|++...
T Consensus 202 HK~~G--pkGiGaLyv~~~~--~~~p~i~GG-gQE--------------~---g~-RsGTenv~~I---vg~~~A~~~a~ 255 (386)
T COG1104 202 HKFGG--PKGIGALYVRPGV--RLEPLIHGG-GQE--------------R---GL-RSGTENVPGI---VGFGKAAEIAV 255 (386)
T ss_pred hhccC--CCceEEEEECCCC--ccCceeccC-cCC--------------C---CC-CCCCccHHHH---HHHHHHHHHHH
Confidence 99999 9999999997766 578887774 431 1 23 7999999997 88889998876
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEe
Q 037063 425 ALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISL 504 (588)
Q Consensus 425 ~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v 504 (588)
+. ++....|++.|+++|.+.|.+. .|.+.+.+... ..-.++++|.+++ +..+.+...|+.+||.+
T Consensus 256 ~~-~~~~~~~~~~lr~~l~~~l~~~--------~p~~~~~g~~~-~rlP~~~~~~f~g-----v~gE~ll~~L~~~gI~v 320 (386)
T COG1104 256 EE-LEEENARLRKLRDRLEDGLLEI--------IPDVYLNGDDE-PRLPNILNFSFPG-----VEGESLLLALDLAGIAV 320 (386)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHhc--------CCcEEEcCCcc-cCCCCeEEEEeCC-----CcHHHHHHhccccCeEE
Confidence 63 7889999999999999999985 58899888642 1235788999988 66888899999999999
Q ss_pred ccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 505 SCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 505 ~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
++|+.|+.+....+ +.|..-. .+.....+.||+|||.+||+|||+++++.+.+.++..
T Consensus 321 StGSACsS~~~~pS-----hVL~AmG--~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~l 378 (386)
T COG1104 321 STGSACSSGSLEPS-----HVLRAMG--ISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRL 378 (386)
T ss_pred eccccccCCCCCcc-----HHHHHcC--CChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999998766553 2333310 0001122399999999999999999999999987764
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-49 Score=422.17 Aligned_cols=388 Identities=19% Similarity=0.263 Sum_probs=309.7
Q ss_pred hHHHHHhhhccCCCC----CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccc
Q 037063 95 QADRIRAQDYFHLSL----NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSW 170 (588)
Q Consensus 95 ~~~~iR~~~f~~l~~----~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~ 170 (588)
+++.+|. +||.++. .+.+||||++++++|+.+++++.+++. ..++|+++. .+.
T Consensus 4 ~~~~~r~-~fp~~~~~~~~~~~iYld~a~~~~~~~~v~~a~~~~~~-~~~~~~~~~--------------------~~~- 60 (406)
T PRK09295 4 SVEKVRA-DFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYR-HGYAAVHRG--------------------IHT- 60 (406)
T ss_pred ChHHHHh-hCccccCcCCCCceEEEeCcccccCCHHHHHHHHHHHH-hcCCCCCCc--------------------ccH-
Confidence 4567887 6999842 147999999999999999999877664 244565321 010
Q ss_pred cccCCchhHHHHHHHHHHHHHhCC-CCCCceEEEecCHHHHHHHHHHhC---CCCCCCeEE-EcCCCchhHHHHHHHHHH
Q 037063 171 LQYGSEESELESKIRKRIMDFMNI-SEDDYTLVFTANQSSAFKLLAESY---PFYSNPRLL-TVYDHENEAAALMIESSK 245 (588)
Q Consensus 171 ~~~g~~~~~~~~~~r~~ia~~lga-~~~e~~vvft~g~T~al~lv~~s~---~~~~gd~ll-~~~e~~s~~~~~~~~~a~ 245 (588)
.+....+.++++|+.|++++|+ +++ +|+||+|+|+++++++.++ .+++||+|+ +..+|+++...| ...++
T Consensus 61 --~~~~~~~~~~~~r~~la~~~~~~~~~--~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~-~~~~~ 135 (406)
T PRK09295 61 --LSAQATEKMENVRKQAALFINARSAE--ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPW-QMLCA 135 (406)
T ss_pred --HHHHHHHHHHHHHHHHHHHcCcCCCC--eEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHH-HHHHH
Confidence 0112367889999999999998 444 5999999999999999886 368999955 677888866666 56778
Q ss_pred hcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC
Q 037063 246 KRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS 324 (588)
Q Consensus 246 ~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~ 324 (588)
..|++++.++++ +++.++.++|+++++ ++|++|++++++|+||.++|+++| ++|+++|+++++|++|.++
T Consensus 136 ~~g~~v~~v~~~-~~~~~d~~~l~~~i~--------~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g 206 (406)
T PRK09295 136 RVGAELRVIPLN-PDGTLQLETLPALFD--------ERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVM 206 (406)
T ss_pred HcCcEEEEEecC-CCCCCCHHHHHHhcC--------CCcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccC
Confidence 899999999997 678899999999997 689999999999999999999999 9999999999999999887
Q ss_pred CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 325 KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 325 ~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
..++++..+++|++++|+||++| |.|+|+|++++++++.+++...|+ +......... ...+...+ .+| |.||
T Consensus 207 --~~~~~~~~~~~D~~~~s~~K~~g--p~G~G~l~~~~~~~~~~~~~~~g~-~~~~~~~~~~-~~~~~~~~-~r~-e~GT 278 (406)
T PRK09295 207 --HHPVDVQALDCDFYVFSGHKLYG--PTGIGILYVKEALLQEMPPWEGGG-SMIATVSLTE-GTTWAKAP-WRF-EAGT 278 (406)
T ss_pred --ccccCchhcCCCEEEeehhhccC--CCCcEEEEEchHhHhhCCCcccCC-ceeeeeecCC-ccccCCch-hhc-CCCC
Confidence 45566666779999999999988 889999999999888887765442 3322211100 01111111 378 8999
Q ss_pred CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCC
Q 037063 405 SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWN 484 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~ 484 (588)
+++.++ +++.+|++++.++|++++.+|.+.|+++++++|.++ +++++++|. .+.++++|++.+
T Consensus 279 ~~~~~~---~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~---------~~~~~~~~~---~~~~iv~~~~~~-- 341 (406)
T PRK09295 279 PNTGGI---IGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESV---------PDLTLYGPQ---NRLGVIAFNLGK-- 341 (406)
T ss_pred ccHHHH---HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC---------CCEEEeCCC---CCceEEEEEECC--
Confidence 999987 889999999999999999999999999999999884 679999873 467899999876
Q ss_pred CCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCc-cEEEEecCCCCCHHHHHHHHHHHH
Q 037063 485 GTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGV-SVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 485 g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~-~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
+++..+.+.|+++||.+++|++|+... +.. .|. +.||+|+|+|||+|||++|+++|+
T Consensus 342 ---~~~~~~~~~L~~~gI~v~~g~~c~~~~-----------~~~--------~~~~~~iRiS~~~ynt~~did~l~~~l~ 399 (406)
T PRK09295 342 ---HHAYDVGSFLDNYGIAVRTGHHCAMPL-----------MAY--------YNVPAMCRASLAMYNTHEEVDRLVAGLQ 399 (406)
T ss_pred ---cCHHHHHHHHHhCCeEEeccccchHHH-----------HHH--------HCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 457778888999999999999996321 111 222 289999999999999999999998
Q ss_pred Hhh
Q 037063 564 RFL 566 (588)
Q Consensus 564 ~~l 566 (588)
++.
T Consensus 400 ~i~ 402 (406)
T PRK09295 400 RIH 402 (406)
T ss_pred HHH
Confidence 863
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-47 Score=408.15 Aligned_cols=390 Identities=20% Similarity=0.235 Sum_probs=306.4
Q ss_pred HHHhhhccCCCC----CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 037063 98 RIRAQDYFHLSL----NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQY 173 (588)
Q Consensus 98 ~iR~~~f~~l~~----~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 173 (588)
.+| .+||.++. ++.+|||++++++.|+.+++++.+++. ...+|+++. .+. .
T Consensus 16 ~~r-~~fp~~~~~~~~~~~iyLd~a~~~~~p~~v~~a~~~~~~-~~~~~~~~~--------------------~~~---~ 70 (424)
T PLN02855 16 ETR-PDFPILDQTVNGSKLVYLDNAATSQKPAAVLDALQDYYE-EYNSNVHRG--------------------IHA---L 70 (424)
T ss_pred HHH-HhCchhccccCCCCeEEeeCccccCCCHHHHHHHHHHHH-hcCCCCCCc--------------------cch---H
Confidence 355 46998842 248999999999999999999877663 234444210 000 0
Q ss_pred CCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhC---CCCCCCeEE-EcCCCchhHHHHHHHHHHhcCC
Q 037063 174 GSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY---PFYSNPRLL-TVYDHENEAAALMIESSKKRGA 249 (588)
Q Consensus 174 g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~---~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~ 249 (588)
+....+.++++|+.|++++|+++ +++|+||+|+|+++++++.++ .+++||+|+ +..+|+++...| ..+++..|+
T Consensus 71 ~~~~~~~~~~~r~~la~~~~~~~-~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~-~~~a~~~g~ 148 (424)
T PLN02855 71 SAKATDAYELARKKVAAFINAST-SREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPW-QLVAQKTGA 148 (424)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC-CCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHH-HHHHHHcCC
Confidence 11125678899999999999963 235999999999999999875 368999965 567888766555 667788999
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCC
Q 037063 250 RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMD 328 (588)
Q Consensus 250 ~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~ 328 (588)
+++.++++ +++.++++++++.|+ ++++||++++++|+||.++|+++| ++|+++|++|++|++|+++ ..
T Consensus 149 ~v~~v~~~-~~~~~~~~~l~~~i~--------~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g--~~ 217 (424)
T PLN02855 149 VLKFVGLT-PDEVLDVEQLKELLS--------EKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVP--HM 217 (424)
T ss_pred EEEEEecC-CCCCcCHHHHHHHhc--------cCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcC--Cc
Confidence 99999997 556699999999998 689999999999999999999999 9999999999999999887 34
Q ss_pred CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 329 TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
++++..+++||+++|+||++| |.|+|+|+++++.++.+++...|+ +....... +...+...+ .+| +.||+++.
T Consensus 218 ~~~~~~~~~d~~~~s~~K~~g--p~G~G~l~~~~~~~~~~~p~~~g~-~~~~~~~~--~~~~~~~~~-~r~-e~GT~~~~ 290 (424)
T PLN02855 218 PVDVQTLGADFLVASSHKMCG--PTGIGFLWGKSDLLESMPPFLGGG-EMISDVFL--DHSTYAPPP-SRF-EAGTPAIG 290 (424)
T ss_pred CCCchhcCCCEEEeecccccC--CCccEEEEEchhhhhcCCCEecCC-Cceeeeec--CccccCCCh-hhc-cCCChHHH
Confidence 566666779999999999888 889999999999988887766553 22211100 011111111 378 89999999
Q ss_pred chhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCC--CCCcccEEEEEeecCCCC
Q 037063 409 GVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKV--MFDRGPSLAFNVFDWNGT 486 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~--~~~rg~iv~f~~~~~~g~ 486 (588)
++ +++..+++++.++|++++.+|+..|++++++.|+++ ++++++++.. ...++++++|++.+
T Consensus 291 ~~---~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~---------~g~~i~~~~~~~~~~r~~~v~~~~~~---- 354 (424)
T PLN02855 291 EA---IGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSV---------PGVRIYGPKPSEGVGRAALCAFNVEG---- 354 (424)
T ss_pred HH---HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC---------CCEEEeCCCcccccCcccEEEEEECC----
Confidence 97 889999999999999999999999999999999884 7899998754 23568899999876
Q ss_pred CcCHHHHHHHHHhC-CcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCc-cEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 487 RIDPALVQKLADRH-NISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGV-SVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 487 ~i~~~~v~~~l~~~-gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~-~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
++.+.+.+.|.++ ||.++.|++|++. ..+. .|. +.||||+|+|||+|||++|+++|++
T Consensus 355 -~~~~~v~~~L~~~~gI~v~~g~~c~~~------------~~~~-------~g~~~~iRiS~~~ynt~~di~~l~~~l~~ 414 (424)
T PLN02855 355 -IHPTDLSTFLDQQHGVAIRSGHHCAQP------------LHRY-------LGVNASARASLYFYNTKEEVDAFIHALKD 414 (424)
T ss_pred -cCHHHHHHHhcccCCEEEechhhhhHH------------HHHH-------hCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 5577788888766 9999999999631 1111 222 2899999999999999999999999
Q ss_pred hhhh
Q 037063 565 FLDA 568 (588)
Q Consensus 565 ~l~~ 568 (588)
.++.
T Consensus 415 ~~~~ 418 (424)
T PLN02855 415 TIAF 418 (424)
T ss_pred HHHH
Confidence 8755
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-47 Score=404.11 Aligned_cols=386 Identities=17% Similarity=0.208 Sum_probs=305.1
Q ss_pred hHHHHHhhhccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccC
Q 037063 95 QADRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYG 174 (588)
Q Consensus 95 ~~~~iR~~~f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g 174 (588)
.++++|. +||.++ ++.+||||+++|+.|+.+++++.+++. ...+||+.+ .+. .+
T Consensus 2 ~~~~~r~-~fp~l~-~~~iyld~a~~~~~p~~v~~a~~~~~~-~~~~~~~~~--------------------~~~---~~ 55 (398)
T TIGR03392 2 NPAQFRQ-QFPALQ-DGTVYLDSAATALKPQAVIDATQQFYR-LSSGTVHRS--------------------QHQ---QA 55 (398)
T ss_pred ChhHHHH-hCCccC-CCeEEeeCccccCCCHHHHHHHHHHHH-hcCCCCCCc--------------------ccH---HH
Confidence 4567886 699884 478999999999999999999876653 234555321 000 01
Q ss_pred CchhHHHHHHHHHHHHHhCCC-CCCceEEEecCHHHHHHHHHHhC---CCCCCCeEE-EcCCCchhHHHHHHHHHHhcCC
Q 037063 175 SEESELESKIRKRIMDFMNIS-EDDYTLVFTANQSSAFKLLAESY---PFYSNPRLL-TVYDHENEAAALMIESSKKRGA 249 (588)
Q Consensus 175 ~~~~~~~~~~r~~ia~~lga~-~~e~~vvft~g~T~al~lv~~s~---~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~ 249 (588)
....+.++++|+.+++++|++ ++ +|+||+|+|+++++++.++ .+++||+|+ +..+|+++...| ...++..|+
T Consensus 56 ~~~~~~~~~~r~~la~~~g~~~~~--~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~-~~~~~~~g~ 132 (398)
T TIGR03392 56 QSLTARYELARQQVARFLNAPDAE--NIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPW-LMVAQQTGA 132 (398)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCC--eEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHH-HHHHHHcCc
Confidence 123577899999999999995 44 4999999999999999998 368999965 567888765556 567788999
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCC
Q 037063 250 RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMD 328 (588)
Q Consensus 250 ~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~ 328 (588)
+++.++++ .++.+++++++++++ ++|++|++++++|+||.++|+++| ++|+++|+++++|++|.++ ..
T Consensus 133 ~v~~v~~~-~~~~~~~~~l~~~i~--------~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~--~~ 201 (398)
T TIGR03392 133 KVVKLPIG-ADLLPDIRQLPELLT--------PRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVV--HG 201 (398)
T ss_pred EEEEEecC-CCCCcCHHHHHHHhc--------cCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcC--CC
Confidence 99999997 567789999999998 789999999999999999999999 9999999999999999876 23
Q ss_pred CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccc-ccccccCCCCCc
Q 037063 329 TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLD-ESSQSKFPESSI 407 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~-~~~f~e~GT~~~ 407 (588)
++++..+.+|++++|+||++| |.|+|+|+++++.++.+++...++ ........ ..+..+. ..+| |.||+++
T Consensus 202 ~~~~~~~~~d~~~~s~~K~~g--p~G~G~l~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~-e~GT~~~ 273 (398)
T TIGR03392 202 PPDVQALDIDFYAFSGHKLYG--PTGIGVLYGKTELLEAMPPWQGGG-KMLSHVSF----DGFIPQAVPHRF-EAGTPNI 273 (398)
T ss_pred CCChhhcCCCEEEEecccccC--CCceEEEEEcHHHHhhCCCeecCC-ceEeeccc----cccccCCChhhc-cCCCCCH
Confidence 455555669999999999998 889999999999888887755432 22211110 0111111 1277 8999999
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTR 487 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~ 487 (588)
.++ +++.+|++++.+.|++++.+|+..|++++++.|.++ ++++++++. .+++++|.+.+
T Consensus 274 ~~~---~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l---------~g~~~~~~~----~~~i~~~~~~~----- 332 (398)
T TIGR03392 274 AGV---IGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQL---------PGFRSFRCP----GSSLLAFDFAG----- 332 (398)
T ss_pred HHH---HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC---------CCeEEeCCC----CCcEEEEEeCC-----
Confidence 987 788999999999999999999999999999999885 678887642 45799998765
Q ss_pred cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCc-cEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 488 IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGV-SVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 488 i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~-~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
++.+.+.+.|.++||.++.|+.|+. .+... .|. ++||||+|+|||.+||++++++|++++
T Consensus 333 ~~~~~l~~~L~~~gI~v~~g~~~~~------------~~~~~-------~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~ 393 (398)
T TIGR03392 333 VHHSDLAALLAESGIALRAGQHCAQ------------PLMAA-------LGVSGTLRASFAPYNTQQDVDALVDAVGAAL 393 (398)
T ss_pred cCHHHHHHHHHhCCEEEecCccchH------------HHHHH-------hCCCCEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence 5577888888899999999999952 11111 121 389999999999999999999999877
Q ss_pred hh
Q 037063 567 DA 568 (588)
Q Consensus 567 ~~ 568 (588)
+.
T Consensus 394 ~~ 395 (398)
T TIGR03392 394 EL 395 (398)
T ss_pred HH
Confidence 64
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=401.92 Aligned_cols=386 Identities=17% Similarity=0.219 Sum_probs=306.4
Q ss_pred hHHHHHhhhccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccC
Q 037063 95 QADRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYG 174 (588)
Q Consensus 95 ~~~~iR~~~f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g 174 (588)
+++++|+ +||.++ ++.+||||+++|+.|+.+++++.+++.. .++|+++. .+. .+
T Consensus 5 ~~~~~r~-~fp~l~-~~~~yld~a~~~~~~~~v~~a~~~~~~~-~~~~~~~~--------------------~~~---~~ 58 (401)
T PRK10874 5 NPAQFRA-QFPALQ-DAGVYLDSAATALKPQAVIEATQQFYSL-SAGNVHRS--------------------QFA---AA 58 (401)
T ss_pred CHHHHHH-hCCCcC-CceEEEeCCcccCCCHHHHHHHHHHHHh-ccCCCCCc--------------------ccH---HH
Confidence 5678886 699884 5799999999999999999998776643 44565321 000 01
Q ss_pred CchhHHHHHHHHHHHHHhCC-CCCCceEEEecCHHHHHHHHHHhC---CCCCCCeEE-EcCCCchhHHHHHHHHHHhcCC
Q 037063 175 SEESELESKIRKRIMDFMNI-SEDDYTLVFTANQSSAFKLLAESY---PFYSNPRLL-TVYDHENEAAALMIESSKKRGA 249 (588)
Q Consensus 175 ~~~~~~~~~~r~~ia~~lga-~~~e~~vvft~g~T~al~lv~~s~---~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~ 249 (588)
....+.++++|+.+++++|+ +++ +|+||+|+|+++++++.++ .+++||+|+ +..+|+++...| ...++..|+
T Consensus 59 ~~~~~~~~~~r~~la~~~g~~~~~--~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~-~~~~~~~g~ 135 (401)
T PRK10874 59 QRLTARYEAAREQVAQLLNAPDAK--NIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPW-LMVAQQTGA 135 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCC--EEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHH-HHHHHHhCC
Confidence 22367899999999999999 444 4999999999999999998 468999955 678888866666 567788999
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCC
Q 037063 250 RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMD 328 (588)
Q Consensus 250 ~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~ 328 (588)
+++.++++ .++.+++++++++++ ++|++|++++++|+||.++|+++| ++|+++|+++++|++|.++ ..
T Consensus 136 ~v~~v~~~-~~~~~d~~~l~~~i~--------~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g--~~ 204 (401)
T PRK10874 136 KVVKLPLG-ADRLPDVDLLPELIT--------PRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAV--HF 204 (401)
T ss_pred EEEEEecC-CCCcCCHHHHHHhcC--------cCcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccc--cc
Confidence 99999997 567899999999998 789999999999999999999999 9999999999999999876 23
Q ss_pred CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc-cccccccCCCCCc
Q 037063 329 TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL-DESSQSKFPESSI 407 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~-~~~~f~e~GT~~~ 407 (588)
++++..+++|++++|+||+|| |.|+|+|+++++.++.+.+...++ ........ + .+... ...+| +.||+++
T Consensus 205 ~~~~~~~~~d~~~~s~~K~~g--p~G~G~l~~~~~~~~~~~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~-e~Gt~~~ 276 (401)
T PRK10874 205 PADVQALDIDFYAFSGHKLYG--PTGIGVLYGKSELLEAMSPWQGGG-KMLTEVSF--D--GFTPQSAPWRF-EAGTPNV 276 (401)
T ss_pred cCCchhcCCCEEEEecccccC--CCccEEEEEchHHHhcCCCeecCC-cceEeecc--C--ccCCCCChhhc-cCCCcCH
Confidence 345555669999999999988 889999999999988887765442 22111110 0 11111 11277 8999999
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTR 487 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~ 487 (588)
.++ +++..|++++.++|++++.+|++.|++++++.|+++ ++++++.+. .+++++|++.+
T Consensus 277 ~~~---~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~---------~g~~~~~~~----~~~i~~~~~~~----- 335 (401)
T PRK10874 277 AGV---IGLSAALEWLADIDINQAESWSRSLATLAEDALAKL---------PGFRSFRCQ----DSSLLAFDFAG----- 335 (401)
T ss_pred HHH---HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC---------CCEEEeCCC----CCcEEEEEECC-----
Confidence 886 788999999999999999999999999999999874 678887652 45799998765
Q ss_pred cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCc-cEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 488 IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGV-SVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 488 i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~-~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
++.+.+.+.|.++||.++.|..|.. ..+.. .|. ++||+|+|+|||.|||++++++|++++
T Consensus 336 ~~~~~~~~~L~~~gI~v~~g~~~~~-----------~~~~~--------~g~~~~iRiS~~~~nt~edid~ll~al~~~~ 396 (401)
T PRK10874 336 VHHSDLVTLLAEYGIALRAGQHCAQ-----------PLLAA--------LGVTGTLRASFAPYNTQSDVDALVNAVDRAL 396 (401)
T ss_pred cCHHHHHHHHHHCCcEEeccccchH-----------HHHHH--------hCCCCEEEEEecccCCHHHHHHHHHHHHHHH
Confidence 5577888888889999999998852 11111 221 389999999999999999999999887
Q ss_pred hh
Q 037063 567 DA 568 (588)
Q Consensus 567 ~~ 568 (588)
+.
T Consensus 397 ~~ 398 (401)
T PRK10874 397 EL 398 (401)
T ss_pred HH
Confidence 64
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=405.19 Aligned_cols=367 Identities=22% Similarity=0.272 Sum_probs=294.2
Q ss_pred eeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHh
Q 037063 113 VCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFM 192 (588)
Q Consensus 113 vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~l 192 (588)
||||++|+|++|+.|++++.+++. ..++||++.. +.. +....++++++|+.+++++
T Consensus 1 iYld~~~~~~~p~~v~~a~~~~~~-~~~~~~~~~~------------------~~~-----~~~~~~~~~~~r~~la~~l 56 (371)
T PF00266_consen 1 IYLDNAGTGPMPKSVLEAISDYLR-NFYANPHSGV------------------SHR-----SREFAEILEEAREALAKLL 56 (371)
T ss_dssp EEEBTSSS-B-BHHHHHHHHHHHH-HSGSSTSTSS------------------STT-----SHHHHHHHHHHHHHHHHHH
T ss_pred CEeeCCCccCCCHHHHHHHHHHHH-HhhhcCcccc------------------cch-----hhhhhHHHHHHHHHHHHhc
Confidence 799999999999999999977764 3466664310 001 1123788999999999999
Q ss_pred CCCCCCceEEEecCHHHHHHHHHHhC--CCCCCCeE-EEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHH
Q 037063 193 NISEDDYTLVFTANQSSAFKLLAESY--PFYSNPRL-LTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLM 269 (588)
Q Consensus 193 ga~~~e~~vvft~g~T~al~lv~~s~--~~~~gd~l-l~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~ 269 (588)
|++++ ++|+||+|+|+|+++++.++ ++++|++| ++..+|+++...| ...+++.|++|+.++.+ .++.+++++++
T Consensus 57 g~~~~-~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~-~~~~~~~g~~v~~i~~~-~~~~~~~~~~~ 133 (371)
T PF00266_consen 57 GAPPD-EEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPW-EEIAKRKGAEVRVIPAD-PGGSLDLEDLE 133 (371)
T ss_dssp TSSTT-EEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHH-HHHHHHTTEEEEEEEEG-TTSSCSHHHHH
T ss_pred CCccc-cccccccccchhhhhhhhcccccccccccccccccccccccccc-ccccccchhhhcccccc-ccchhhhhhhh
Confidence 99873 56999999999999999998 57899995 5889999876666 67778999999999998 67889999999
Q ss_pred HHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccC
Q 037063 270 KKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIF 348 (588)
Q Consensus 270 ~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~ 348 (588)
+.|+ +++++|+++|++|.||.++|+++| ++||++|+++++|++|+++ ..+++++.+++||+++|+||++
T Consensus 134 ~~l~--------~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g--~~~id~~~~~~D~~~~s~~Kl~ 203 (371)
T PF00266_consen 134 EALN--------PDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAG--CVPIDLDELGADFLVFSSHKLG 203 (371)
T ss_dssp HHHH--------TTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTT--TSS--TTTTTESEEEEESTSTT
T ss_pred hhhc--------cccceEEeecccccccEEeeeceehhhhhccCCceeEechhccc--cccccccccccceeeecccccC
Confidence 9998 899999999999999999999999 9999999999999999999 5678888888999999999966
Q ss_pred CCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCH
Q 037063 349 GENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGL 428 (588)
Q Consensus 349 G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~ 428 (588)
| |.|+|+||+++++++++++...++ +....... . ...+.. ...+| +.||+++..+ +++..+++++.+.|+
T Consensus 204 g--p~G~g~l~v~~~~~~~~~p~~~~~-~~~~~~~~-~-~~~~~~-~~~~~-~~GT~~~~~~---~~l~~al~~~~~~g~ 273 (371)
T PF00266_consen 204 G--PPGLGFLYVRPEAIERLRPAKPGG-GYLDFPSL-Q-EYGLAD-DARRF-EGGTPNVPAI---YALNEALKLLEEIGI 273 (371)
T ss_dssp S--SSTEEEEEEEHHHHHHHHTSSSSS-STTTHHHH-H-HHCHHS-TTTGS-SSSS--HHHH---HHHHHHHHHHHHHHH
T ss_pred C--CCchhhheehhhhhhccccccccc-cccccccc-h-hccccc-ccccc-cccceeeehh---hhHHHHHhhhhcccc
Confidence 6 999999999999999998887664 22111100 0 000011 11367 7999999987 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEecccc
Q 037063 429 ILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGF 508 (588)
Q Consensus 429 ~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~ 508 (588)
+++.+|...|.+++.+.|.++ +.+++++|.....++++++|.+.+ ++...+.+.|.++||.++.|+
T Consensus 274 ~~i~~~~~~l~~~~~~~l~~~---------~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~L~~~~I~~~~G~ 339 (371)
T PF00266_consen 274 ERIRERIRELAEYLREALEEL---------PGIEVLGPDDEPRRPSIVSFNLPG-----SDADDVVKYLEERGIAVSTGS 339 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---------TTEEESSSSCGGBGTTEEEEEETT-----SSHHHHHHHHHHHTEEEEEST
T ss_pred ccchhhhhhHHHHHHhhhhcC---------CceeEeeecccccccceEEEeecC-----CCHHHHHHHHhhcCEEEeccC
Confidence 999999999999999999995 789999976666788999999976 668889998888899999999
Q ss_pred ccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHH
Q 037063 509 LQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRL 558 (588)
Q Consensus 509 ~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~l 558 (588)
.|+.. ....... . ++||||+|+|||+||||+|
T Consensus 340 ~~~~~---------~~~~~~~-------~--~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 340 ACAGP---------SLDILGM-------G--GVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp TTCHH---------HHHHHHT-------T--TEEEEE-GTTSSHHHHHHH
T ss_pred cccHH---------HHHHhCC-------C--CEEEEeccCCCCHHHHhhC
Confidence 99610 0111111 2 3999999999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=387.34 Aligned_cols=389 Identities=19% Similarity=0.263 Sum_probs=305.9
Q ss_pred HHHhhhccCCCC----CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 037063 98 RIRAQDYFHLSL----NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQY 173 (588)
Q Consensus 98 ~iR~~~f~~l~~----~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 173 (588)
++|+ +||.++. ++.+|||++++|++|+.+++++.+++. ..++||++.+ +. .
T Consensus 2 ~~~~-~f~~~~~~~~~~~~~yld~~~~~~~p~~v~~a~~~~~~-~~~~~~~~~~--------------------~~---~ 56 (403)
T TIGR01979 2 NIRA-DFPILKRKINGKPLVYLDSAATSQKPQQVIDAVAEYYR-NSNANVHRGI--------------------HT---L 56 (403)
T ss_pred chhh-hCchhcCCCCCCceEEEeCccccCCCHHHHHHHHHHHH-hCCCCCCCCc--------------------cH---H
Confidence 4565 6998842 146999999999999999999876653 2455663210 00 0
Q ss_pred CCchhHHHHHHHHHHHHHhCCC-CCCceEEEecCHHHHHHHHHHhCC---CCCCCeEE-EcCCCchhHHHHHHHHHHhcC
Q 037063 174 GSEESELESKIRKRIMDFMNIS-EDDYTLVFTANQSSAFKLLAESYP---FYSNPRLL-TVYDHENEAAALMIESSKKRG 248 (588)
Q Consensus 174 g~~~~~~~~~~r~~ia~~lga~-~~e~~vvft~g~T~al~lv~~s~~---~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G 248 (588)
+....+.++++|+.|++++|++ ++ +|+||+|+|+++++++.++. +++|++|+ +..+|+++...| ...++..|
T Consensus 57 ~~~~~~~~~~~r~~ia~~~~~~~~~--~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~-~~~~~~~g 133 (403)
T TIGR01979 57 SVRATEAYEAVREKVAKFINAASDE--EIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPW-QLLAERTG 133 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCC--eEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHH-HHHHHhcC
Confidence 1122567889999999999997 34 49999999999999998863 67899965 567888766555 56777889
Q ss_pred CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCC
Q 037063 249 ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDM 327 (588)
Q Consensus 249 ~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~ 327 (588)
++++.++++ +++.++.+++++.++ +++++|++++++|+||.++|+++| ++|+++|+++++|+++.++ .
T Consensus 134 ~~~~~v~~~-~~~~~~~~~l~~~i~--------~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g--~ 202 (403)
T TIGR01979 134 ATLKFIPLD-DDGTLDLDDLEKLLT--------EKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVP--H 202 (403)
T ss_pred cEEEEEecC-CCCCCCHHHHHHHhc--------cCCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcC--c
Confidence 999999998 778899999999998 789999999999999999999999 9999999999999999887 3
Q ss_pred CCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCc
Q 037063 328 DTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407 (588)
Q Consensus 328 ~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~ 407 (588)
.++++..+++|++++|+||++| |.|+|+++++++.++.+++...|+ ++...... +...+...+ .+| +.||+++
T Consensus 203 ~~~~~~~~~~d~~~~s~~K~~g--p~G~g~l~~~~~~~~~~~~~~~g~-~~~~~~~~--~~~~~~~~~-~~~-~~gt~~~ 275 (403)
T TIGR01979 203 MPVDVQALDCDFYVFSGHKMYG--PTGIGVLYGKEELLEQMPPFLGGG-EMIAEVSF--EETTYNEAP-HKF-EAGTPNI 275 (403)
T ss_pred cccCccccCCCEEEEecccccC--CCCceEEEEchHHHhcCCCeecCC-Cceeeccc--CccccCCCh-hhc-CCCCccH
Confidence 4556666679999999999998 889999999999888887766553 33222111 000111111 267 7899999
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTR 487 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~ 487 (588)
..+ +++..+++++.++|++++.+|+..|++++++.|.++ +++++++|.....++++++|.+.+
T Consensus 276 ~~~---~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~---------~g~~~~~~~~~~~~~~~v~~~~~~----- 338 (403)
T TIGR01979 276 AGV---IGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEI---------PGLRIYGPRDAEDRGGIISFNVEG----- 338 (403)
T ss_pred HHH---HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC---------CCEEEeCCCCccccCceEEEEeCC-----
Confidence 886 788899999999999999999999999999999874 679999876544678999999865
Q ss_pred cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCC-ccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 488 IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSG-VSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 488 i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g-~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
++...+.+.|+++||.++.|++|+.. .+.. .| .+.||+|+|+|||.+||++++++|++++
T Consensus 339 ~~~~~~~~~L~~~gI~v~~g~~~~~~-----------~~~~--------~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~ 399 (403)
T TIGR01979 339 VHPHDVGTILDEEGIAVRSGHHCAQP-----------LMRR--------FGVPATCRASFYIYNTEEDIDALVEALKKVR 399 (403)
T ss_pred cCHHHHHHHHhhCCEEEcchhhhhHH-----------HHHH--------hCCCCEEEEEeccCCCHHHHHHHHHHHHHHH
Confidence 45677888999999999999888521 1111 12 1289999999999999999999999866
Q ss_pred hh
Q 037063 567 DA 568 (588)
Q Consensus 567 ~~ 568 (588)
+.
T Consensus 400 ~~ 401 (403)
T TIGR01979 400 KF 401 (403)
T ss_pred HH
Confidence 53
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-44 Score=377.14 Aligned_cols=358 Identities=15% Similarity=0.111 Sum_probs=280.9
Q ss_pred eeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHh
Q 037063 113 VCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFM 192 (588)
Q Consensus 113 vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~l 192 (588)
+||||++.+++|+.+++++.+++. ..++||++. .+. ++....++++++|+.+++++
T Consensus 1 iYld~a~~~~~~~~v~~a~~~~~~-~~~~~~~~~--------------------~~~---~~~~~~~~~~~~r~~la~~~ 56 (364)
T PLN02651 1 LYLDMQATTPIDPRVLDAMLPFLI-EHFGNPHSR--------------------THL---YGWESEDAVEKARAQVAALI 56 (364)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHH-hCCCCCChh--------------------hhH---HHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999876663 235666321 010 01123678899999999999
Q ss_pred CCCCCCceEEEecCHHHHHHHHHHhC---CCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHH
Q 037063 193 NISEDDYTLVFTANQSSAFKLLAESY---PFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKL 268 (588)
Q Consensus 193 ga~~~e~~vvft~g~T~al~lv~~s~---~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l 268 (588)
|+++++ |+||+|+|+++++++.++ .+++|++|+ +..+|++....| ..+ +..|++++.++++ +++.++++++
T Consensus 57 g~~~~~--v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~-~~~-~~~g~~v~~v~~~-~~~~~d~~~l 131 (364)
T PLN02651 57 GADPKE--IIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSC-RHL-QQEGFEVTYLPVK-SDGLVDLDEL 131 (364)
T ss_pred CCCCCe--EEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHH-HHH-HhcCCEEEEEccC-CCCcCCHHHH
Confidence 998665 999999999988877654 147789865 567888744444 333 4679999999997 6788999999
Q ss_pred HHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCcc
Q 037063 269 MKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKI 347 (588)
Q Consensus 269 ~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~ 347 (588)
+++|+ +++++|++++++|+||.++|+++| ++||++|++++||++|.++ ..+++++.+++||+++|+|||
T Consensus 132 ~~~i~--------~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g--~~~~~~~~~~~D~~~~s~hK~ 201 (364)
T PLN02651 132 AAAIR--------PDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVG--KIPVDVDDLGVDLMSISGHKI 201 (364)
T ss_pred HHhcC--------CCcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhC--CcccCcccCCCCEEEechhhh
Confidence 99998 789999999999999999999999 9999999999999999998 456666777799999999998
Q ss_pred CCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhC
Q 037063 348 FGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALG 427 (588)
Q Consensus 348 ~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G 427 (588)
+| |.|+|+||++++....+.+...|+ ++. .+| +.||+|+.++ .++.++|+++.+.
T Consensus 202 ~g--p~G~g~l~v~~~~~~~l~p~~~g~-~~~-----------------~~~-~~GT~~~~~~---~~l~~al~~~~~~- 256 (364)
T PLN02651 202 YG--PKGVGALYVRRRPRVRLEPLMSGG-GQE-----------------RGR-RSGTENTPLV---VGLGAACELAMKE- 256 (364)
T ss_pred CC--CCceEEEEEcCCCCCCCCccccCC-Ccc-----------------CCc-cCCCccHHHH---HHHHHHHHHHHHh-
Confidence 66 999999999999888888877653 220 145 7899999997 8999999999874
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCC-cccEEEEEeecCCCCCcCHHHHHHHHHhCCcEecc
Q 037063 428 LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFD-RGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSC 506 (588)
Q Consensus 428 ~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~-rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~ 506 (588)
.+++.+|.+.|.+++++.|+++ .+++++++|..... +.++++|++.+ ++++.+.+.|.+ |.++.
T Consensus 257 ~~~i~~~~~~l~~~l~~~l~~~--------~~~~~i~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~L~~--i~v~~ 321 (364)
T PLN02651 257 MDYDEKHMKALRERLLNGLRAK--------LGGVRVNGPRDPEKRYPGTLNLSFAY-----VEGESLLMGLKE--VAVSS 321 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------CCCEEEECCCCcccCcCCEEEEEeCC-----CCHHHHHHHhCC--EEEEc
Confidence 6999999999999999999863 46899999854333 46799999976 667888887764 99999
Q ss_pred ccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHH
Q 037063 507 GFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTY 556 (588)
Q Consensus 507 G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~ 556 (588)
|++|+++...... .+..- +. ......+.||+|+|+|||+||||
T Consensus 322 g~~c~~~~~~~~~-----~~~~~-g~-~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 322 GSACTSASLEPSY-----VLRAL-GV-PEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred hhhcCCCCCCcCH-----HHHHc-CC-ChHHhCceEEEEcCCCCCHHHcC
Confidence 9999876433211 11110 00 00001239999999999999985
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=372.63 Aligned_cols=368 Identities=17% Similarity=0.173 Sum_probs=286.9
Q ss_pred eeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHh
Q 037063 113 VCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFM 192 (588)
Q Consensus 113 vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~l 192 (588)
+||||++++++|+.+++++.+++.. .++||++. +. .+.+..+.++++|+.+++++
T Consensus 1 ~yld~aa~~~~~~~v~~a~~~~~~~-~~~~~~~~---------------------~~---~~~~~~~~~~~~r~~la~~~ 55 (379)
T TIGR03402 1 IYLDNNATTRVDPEVLEAMLPYFTE-YFGNPSSM---------------------HS---FGGEVGKAVEEAREQVAKLL 55 (379)
T ss_pred CcCCCcCCCCCCHHHHHHHHHHHHh-cCCCCCcc---------------------cH---HHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999998777653 46776321 10 01123677899999999999
Q ss_pred CCCCCCceEEEecCHHHHHHHHHHhCC--CCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHH
Q 037063 193 NISEDDYTLVFTANQSSAFKLLAESYP--FYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLM 269 (588)
Q Consensus 193 ga~~~e~~vvft~g~T~al~lv~~s~~--~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~ 269 (588)
|+++++ |+||+|+|+++++++.++. +.++++|+ +..+|+++...| ..+++.|++++.++.+ +++.+++++++
T Consensus 56 g~~~~~--i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~--~~~~~~G~~v~~v~~~-~~g~~~~~~l~ 130 (379)
T TIGR03402 56 GAEPDE--IIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLC--QHLEKQGYKVTYLPVD-EEGRLDLEELR 130 (379)
T ss_pred CCCCCe--EEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHH--HHHHHcCCEEEEEccC-CCCcCCHHHHH
Confidence 998654 9999999999999888751 24567765 577888744433 3445689999999987 66789999999
Q ss_pred HHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccC
Q 037063 270 KKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIF 348 (588)
Q Consensus 270 ~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~ 348 (588)
+.++ +++++|++++++|+||.++|+++| ++|+++|+++++|++|.++ ..++++..+++|++++|+||++
T Consensus 131 ~~i~--------~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g--~~~~~~~~~~~D~~~~s~~K~~ 200 (379)
T TIGR03402 131 AAIT--------DDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVG--KIPIDLKEMNIDMLSLSGHKLH 200 (379)
T ss_pred HhcC--------CCcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECccccc--ccccCcccCCCCEEEEcHHHcC
Confidence 9997 689999999999999999999999 9999999999999999987 4566666677999999999987
Q ss_pred CCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCH
Q 037063 349 GENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGL 428 (588)
Q Consensus 349 G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~ 428 (588)
| |.|+|++|++++. .+.|...|+ +. . ..+ +.||+++.++ .++.++++++.+ .+
T Consensus 201 g--p~G~g~l~v~~~~--~~~p~~~g~-~~--------------~---~~~-~~gt~~~~~~---~~l~~al~~~~~-~~ 253 (379)
T TIGR03402 201 G--PKGVGALYIRKGT--RFRPLLRGG-HQ--------------E---RGR-RAGTENVPGI---VGLGKAAELATE-HL 253 (379)
T ss_pred C--CCceEEEEECCCC--CCCCcccCC-cc--------------C---CCc-CCCCccHHHH---HHHHHHHHHHHH-hH
Confidence 7 9999999999875 355555442 11 0 034 6899999987 788999999877 47
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEecccc
Q 037063 429 ILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGF 508 (588)
Q Consensus 429 ~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~ 508 (588)
+.+.+|.+.|+++++++|.+. +++++++++.. ...+++++|.+.. ++++.+...|+++||.++.|+
T Consensus 254 ~~~~~~~~~l~~~l~~~l~~~--------~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~l~~~gI~v~~g~ 319 (379)
T TIGR03402 254 EEENTRVRALRDRLEAGLLAR--------IPDARLNGDPT-KRLPNTVNISFEY-----IEGEAILLLLDMEGICASSGS 319 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------CCCEEEeCCCc-cCCCCEEEEEecC-----CCHHHHHHhhccCCEEEEchh
Confidence 999999999999999999851 36788888643 1224689898876 567888888899999999999
Q ss_pred ccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 509 LQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 509 ~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+|+++....+. +....+. ......+.||+|+|+|||.|||+++++.|++.++.
T Consensus 320 ~c~~~~~~~~~------~~~~lg~-~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~ 372 (379)
T TIGR03402 320 ACTSGSLEPSH------VLRAMGV-PHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIAR 372 (379)
T ss_pred hcCCCCCCcCH------HHHHcCC-ChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 99887544321 1111000 00011138999999999999999999999998765
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=364.65 Aligned_cols=377 Identities=16% Similarity=0.167 Sum_probs=289.4
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
.+.+|||++++|+++..|++++..++ ...++||||. .||.+..+.++++|+.||
T Consensus 42 ~~~vyld~~at~p~~~~Vldam~~~~-~~~~~nPh~~-------------------------~y~w~~~~~~E~aR~~VA 95 (428)
T KOG1549|consen 42 TRPVYLDNQATGPMDPRVLDAMLPYL-LEYLGNPHSR-------------------------SYGWKAEDAVEAAREQVA 95 (428)
T ss_pred CccEEEecCcCCCCCHHHHHHHHHHH-HHhhcCCCcc-------------------------ccchhhhHHHHHHHHHHH
Confidence 58899999999999999999996555 4678998741 234444667899999999
Q ss_pred HHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC----eEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccC
Q 037063 190 DFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP----RLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIH 264 (588)
Q Consensus 190 ~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd----~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~ 264 (588)
+++|+++.+ |+||+|+|+++|+++.+++|..++ +|+ +..+|++ ...+ .+..+..|++|+++|++ .++.++
T Consensus 96 klInAd~~d--IiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~-v~~s-~~~l~~~g~~Vt~lpv~-~~~~~d 170 (428)
T KOG1549|consen 96 KLINADPSD--IVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPC-VLDS-CRALQEEGLEVTYLPVE-DSGLVD 170 (428)
T ss_pred HHhCCCCCc--EEEeCCchHHHHHHHHHhhccccccccceEEEecccCcc-hhHH-HHHHHhcCeEEEEeccC-cccccc
Confidence 999999886 999999999999999999988777 666 5666665 6666 35668889999999999 889999
Q ss_pred HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEec
Q 037063 265 SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICS 343 (588)
Q Consensus 265 ~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S 343 (588)
.+++++.|+ ++|+||.+.+++|.+|+++|+++| ++|++.|++|++||||.+| ..++|+.+.++||+++|
T Consensus 171 ~~~~~~~i~--------~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG--~i~vDV~eln~D~~s~s 240 (428)
T KOG1549|consen 171 ISKLREAIR--------SKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVG--KIPVDVQELNADFLSIS 240 (428)
T ss_pred HHHHHHhcC--------CCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcC--CccccHHHcCchheeee
Confidence 999999999 899999999999999999999999 9999999999999999998 35555556669999999
Q ss_pred cCccCCCCCCceEEEEEeCcc-hhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHH
Q 037063 344 FYKIFGENPSGFGCLFVKKSS-ASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDH 422 (588)
Q Consensus 344 ~~K~~G~~P~G~G~L~v~~~~-~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~ 422 (588)
+||||| |+|+|+||+|+.. .-++.|.+.|| |... -| +.||.+.+.. .++..|.++
T Consensus 241 ~HK~yg--p~~iGaLYvr~~~~~~~~~p~~~GG-gq~r-----------------~~-rsGT~~~~~~---~~~gsA~e~ 296 (428)
T KOG1549|consen 241 AHKIYG--PPGIGALYVRRKRPRLRVEPPLSGG-GQER-----------------GL-RSGTVATPLA---VGLGSAAEF 296 (428)
T ss_pred cccccC--CCcceEEEEccCCCcccccCcccCC-cccc-----------------cc-ccCCcCchhh---hhhHHHHHH
Confidence 999999 7789999999822 12344666664 4421 34 8999998886 788899999
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCc
Q 037063 423 ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNI 502 (588)
Q Consensus 423 l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI 502 (588)
+.+. +..+..++..+...+..++..- .+.+.++|+.. ....+.++|++.-..|+ .-+++...|
T Consensus 297 ~~~~-~~~~~~~~~~~~~~ll~~i~~~--------~~~~~~~G~~~-~~~~~~~~~~~~~~~g~-------~~~~~~~~~ 359 (428)
T KOG1549|consen 297 VNKE-MAYDEAIIKRLSEKLLMGIGQS--------LPEVTLNGSGK-SRYPGLVSLSFPYVEGE-------SLLMDLKDV 359 (428)
T ss_pred HHhh-cchhHHHHHHHHHHHHHHHhhh--------CchhhccCCcc-cccccceeeecccccCc-------chhhhhhhh
Confidence 8775 4556666666777777777552 35666777644 23567888888743332 123344567
Q ss_pred EeccccccCccc-ccchHHHHHHHHhhhcCCC-CCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhhhccccccc
Q 037063 503 SLSCGFLQNIFF-SGEYEQERVRVLETRSGTN-ETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDADFVEKERWR 577 (588)
Q Consensus 503 ~v~~G~~c~~~~-~~~~~~~~~~~l~~~~~~~-~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~~~~~~~~~ 577 (588)
.++.|..|.... ..+|. +... | +.......||+|+|.||+.+|++++++.+++.+...+--..+|.
T Consensus 360 ~l~s~~a~~~~~~epsy~------l~~~---G~~~~~~~~~iRis~G~y~t~~di~~~~~~i~~~v~~~~~~s~l~~ 427 (428)
T KOG1549|consen 360 ALSSGSACTSASLEPSYV------LRAI---GVDEDLAHSSIRISIGRYTTEEDIDYLVDAIKKLVSLLREMSPLWE 427 (428)
T ss_pred hhcccchhhcCCCCcchh------hhhc---CcchhhhcceeEEeeeeeCcHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 788888885432 11211 1110 1 11122348999999999999999999999998877665545553
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=365.07 Aligned_cols=367 Identities=15% Similarity=0.151 Sum_probs=283.8
Q ss_pred eeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHh
Q 037063 113 VCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFM 192 (588)
Q Consensus 113 vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~l 192 (588)
+||||+++++.++.+++++.+++. ..++||++. ..|+......++++|+.+++.+
T Consensus 1 ~yld~aa~~~~~~~v~~~~~~~~~-~~~~n~~~~------------------------~~~~~~~~~~l~~a~~~~~~~~ 55 (382)
T TIGR03403 1 VYLDNNATTMLDPKVKELMDPFFC-DIYGNPNSL------------------------HQFGTATHPAIAEALDKLYKGI 55 (382)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHH-hcCcCCccc------------------------cHHHHHHHHHHHHHHHHHHHHc
Confidence 699999999999999999876664 356777431 1122234667889999999999
Q ss_pred CC-CCCCceEEEecCHHHHHHHHHHhCCC----CCC-CeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCH
Q 037063 193 NI-SEDDYTLVFTANQSSAFKLLAESYPF----YSN-PRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHS 265 (588)
Q Consensus 193 ga-~~~e~~vvft~g~T~al~lv~~s~~~----~~g-d~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~ 265 (588)
|+ +++ +|+||+|+|+++++++.++.+ +++ ++|+ +..+|++....+ ..++..|++++.++++ +++.++.
T Consensus 56 ~~~~~~--~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~--~~~~~~G~~v~~v~~~-~~g~~d~ 130 (382)
T TIGR03403 56 NARDLD--DIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATC--AFLESLGVEVTYLPIN-EQGTITA 130 (382)
T ss_pred CcCCCC--eEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHH--HHHHHCCCEEEEEecC-CCCCCCH
Confidence 98 444 499999999999999998632 454 5655 567888744433 4557789999999998 6788999
Q ss_pred HHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEecc
Q 037063 266 GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSF 344 (588)
Q Consensus 266 e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~ 344 (588)
++|+++++ +++++|++++++|+||.++|+++| ++|+++|+++++|+++.++ ..++++..+++|++++|+
T Consensus 131 ~~l~~~i~--------~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g--~~~~~~~~~~~D~~~~s~ 200 (382)
T TIGR03403 131 EQVREAIT--------EKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIG--KIPVDVQKAGVDFLSFSA 200 (382)
T ss_pred HHHHHhcc--------cCCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcC--CCccCccccCCCEEEEcc
Confidence 99999997 678999999999999999999999 9999999999999998887 344566666799999999
Q ss_pred CccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHH
Q 037063 345 YKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHAD 424 (588)
Q Consensus 345 ~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~ 424 (588)
||++| |.|+|+|++|++. .+.+...|+ +.. ..+ +.||+++.++ +++..+++++.
T Consensus 201 ~K~~g--p~G~g~l~vr~~~--~~~p~~~g~-~~~-----------------~~~-~~gt~~~~~~---~al~~al~~~~ 254 (382)
T TIGR03403 201 HKFHG--PKGVGGLYIRKGV--ELTPLFHGG-EHM-----------------GGR-RSGTLNVPYI---VAMGEAMRLAN 254 (382)
T ss_pred hhhCC--CCceEEEEECCCC--CCCCcccCC-CCC-----------------CCc-ccCCcChHHH---HHHHHHHHHHH
Confidence 99988 8999999999875 355544432 110 023 6899999886 78889999887
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEe
Q 037063 425 ALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISL 504 (588)
Q Consensus 425 ~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v 504 (588)
+. ++.+.+|++.++++++++|+++ ++++++++.. ...+++++|++.+ ++++.+.+.|+++||.+
T Consensus 255 ~~-~~~~~~~~~~l~~~l~~~L~~~---------~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~L~~~gI~v 318 (382)
T TIGR03403 255 EY-LDFEKSHVRRLRDRLEDALLEL---------PDVFVVGDRE-HRVPNTILISIKG-----VEGEAMLWDLNKAGIAA 318 (382)
T ss_pred Hh-HHHHHHHHHHHHHHHHHHHhcC---------CCEEEECCCC-CCcCCEEEEEeCC-----CCHHHHHHhhccCCEEE
Confidence 74 8899999999999999999884 6899998743 1224688898865 56777877788999999
Q ss_pred ccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 505 SCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 505 ~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+.|++|+........ +....+ .+.....+.||+|+|++||+|||++++++|++.+++
T Consensus 319 ~~g~~c~~~~~~~~~------v~~~~g-~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~ 375 (382)
T TIGR03403 319 STGSACASEDLEANP------VMVAIG-ADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQR 375 (382)
T ss_pred EchhccCCCCCCcCH------HHHHcC-CChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999765433211 111100 000011138999999999999999999999987654
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=373.53 Aligned_cols=533 Identities=42% Similarity=0.650 Sum_probs=410.6
Q ss_pred cccccccCC----CcCCCCCCCCCCCCCCCCCccCCCCccchH-HHhhhhHhhhccccCCCCCCCCCCCCcchHHHHHHH
Q 037063 9 ALSEACCRG----CCPNPFHGLPLDHHHHPHELEAPKSPRTAA-AARHEFKVTTTSSLFPNAHFTNHESLPSLQESFANF 83 (588)
Q Consensus 9 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~f 83 (588)
+.++.|++| |+...+-+ |++++ -+++.++. .++++ +++++ +|+.+.|+.+++||.+.+++..|
T Consensus 31 l~sesq~~g~~~~sq~~e~~n-phs~~--------~ts~~l~~~v~Q~r-~ril~--~f~tta~dy~v~lp~~t~al~~v 98 (728)
T KOG2142|consen 31 LFSESQLEGVAFQSQSSENAN-PHSHL--------GTSRSLARLVAQVR-LRILA--LFNTTAFDYEVSLPALTEALKLV 98 (728)
T ss_pred hhhhcccchhhhhhhccccCC-Ccccc--------cchHHHHHHHHHHH-HHHHH--HhccccccccchhHHHHHHHHHH
Confidence 348889999 77775433 33222 11122211 12333 66666 99999999999999999999999
Q ss_pred HHhCCCCCCchhHHHHHhhhccCCCCC-CeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccc
Q 037063 84 TKVFPQYLQTDQADRIRAQDYFHLSLN-NYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICY 162 (588)
Q Consensus 84 ~~~~p~y~~~~~~~~iR~~~f~~l~~~-~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~ 162 (588)
+++||.|.+++.+|++|..+|.|+... -.+++||++.|+++..+... ||+.--|++++
T Consensus 99 ae~fp~~s~tekid~lrs~~y~hls~s~~~~~~~~~~~gl~sy~q~~~---------------------i~~~~~~sls~ 157 (728)
T KOG2142|consen 99 AEAFPFYSQTEKIDNLRSDEYGHLSSSGHLMRLDYSGIGLFSYSQTNE---------------------ISDSEEFSLSE 157 (728)
T ss_pred HHhCccccccccccchhhhhhcccccccceeeeeeeccceEEeeeeee---------------------ccccccccccc
Confidence 999999999999999999999999533 35899999999999844333 24444477777
Q ss_pred cccccccccccCCch-hHHHHH-HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHH
Q 037063 163 RSVNLNSWLQYGSEE-SELESK-IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALM 240 (588)
Q Consensus 163 ~~~~~~s~~~~g~~~-~~~~~~-~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~ 240 (588)
+.+++..+.++++.+ ...... ++.+++.+++++.++|.+++|.+...++.+.++++|++-...+++.++|++.++.||
T Consensus 158 ~~~~ls~~~L~~g~a~~nfeg~kik~ri~d~L~ipe~~y~lldtaSrvSaf~Ldaesy~f~~~~~lltiFgyetgAvlv~ 237 (728)
T KOG2142|consen 158 SEANLSEHSLFGGAAQSNFEGDKIKLRIMDRLNIPESEYVLLDTASRVSAFPLDAESYPFDFNPKLLTIFGYETGAVLVM 237 (728)
T ss_pred cccCcccchhcccchhcccccceeeeeeecccccCCceEEEEEeecccccccchHhhCCCcccchheeecCCCchhhHHH
Confidence 888887777776653 444444 899999999999999999999999999999999999887777888999999999999
Q ss_pred HHHHHhcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHHHHHHHcCcEEEEeCC
Q 037063 241 IESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWMSVAAEKGWHVLLDAT 320 (588)
Q Consensus 241 ~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I~~a~~~g~~vvvDaa 320 (588)
.+.|+.+|+++....+.|+...+..+++++.+...+++.++....+++|+.++..||.++++.|+.++++++|++++|+.
T Consensus 238 ~r~A~~~Ggkt~sa~f~wp~~~l~s~~lkkr~e~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wmt~al~~~whvlLda~ 317 (728)
T KOG2142|consen 238 NRSAELKGGKTASAEFSWPMLYLLSEKLKKRFEDGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWMTLALANNWHVLLDAL 317 (728)
T ss_pred hhhhHhhcCccceeecccchHHHHHHHHHHHHhhccccccchhhheeccchHhhhcccchhHHHHHHHHhhhHHHHHhhh
Confidence 99999999999999999999999999999999865555566678999999999999999999999999999999999999
Q ss_pred CcCCCCCCCCCCCCCCCcEEEeccCccCCCC-CCceEEEEEeCcchhcccCCC--CCCCceEeeecCCC-----------
Q 037063 321 ALGSKDMDTLGLSLFKPDFLICSFYKIFGEN-PSGFGCLFVKKSSASVLSGST--SSVSTIMGIEPSFS----------- 386 (588)
Q Consensus 321 ~~~~~d~~~l~l~~~~~D~vv~S~~K~~G~~-P~G~G~L~v~~~~~~~l~~~~--~g~~g~v~~~~~~~----------- 386 (588)
+++|++|+.++++.++|||.++++++.||.+ |.|+||+.|+|..+..|.-.. +-+.|.+...+.-.
T Consensus 318 ~lG~kdmd~yglS~f~Pdfqg~sf~fv~g~d~psgfGcl~VkKs~i~~l~lrtGcfcn~Gack~~pgl~~~~~~~~~~~g 397 (728)
T KOG2142|consen 318 ALGPKDMDSYGLSLFQPDFQGPSFYFVFGRDDPSGFGCLEVKKSAISGLELRTGCFCNIGACKIYPGLYLEMSQKGLSAG 397 (728)
T ss_pred ccCcchHhhhhhhccCccceeeeEEEEeccCCCCceeeeeeehhhhhceeccCCCCCCCcceeecccccHHHHHHHhhhc
Confidence 9999999999999999999999999999977 899999999998876553221 11134444433000
Q ss_pred --------------------------------------------------cc---ccccc-----c---------cc--c
Q 037063 387 --------------------------------------------------EI---IELET-----L---------DE--S 397 (588)
Q Consensus 387 --------------------------------------------------~~---~~~~~-----~---------~~--~ 397 (588)
++ +++.. + +. .
T Consensus 398 ~~cgD~dg~~~s~~~~~~~~~~a~~~~~v~~~~~T~~lm~~~~~se~e~~~n~~a~Pl~~~~~~~R~~d~~~~s~~~~~~ 477 (728)
T KOG2142|consen 398 KGCGDNDGQPVSGYMQTPADVGAYLSAQVSDVLETDPLMKSPVFSEQEDSDNGIATPLLERVQLKRHFDAAVASYPIKCA 477 (728)
T ss_pred cccccCCCCcccccccchhhhhHHHHHhhhhhhhccccccccccchhhhccccccCCcchhhcccchhhhhhhhhhhhhc
Confidence 00 00000 0 00 0
Q ss_pred ccc--cCC-----------------------------------------------CCCccchhhHHHHH-----------
Q 037063 398 SQS--KFP-----------------------------------------------ESSISGVSSKLVEC----------- 417 (588)
Q Consensus 398 ~f~--e~G-----------------------------------------------T~~~~~~~~~~al~----------- 417 (588)
.|| +.+ +.++. .++.
T Consensus 478 ~~EI~~~~~~~~gl~~~~s~m~~~~~~~alr~etE~e~~Li~~~~~~~~d~~~~~~vs~~-----~sl~~~~a~~~s~~d 552 (728)
T KOG2142|consen 478 AFEIEEENSGSQGLKYDRSWMSVDMNGSALRQETESELCLIGPRIKVQEDEQSERRVSFP-----TSLEQGEASKCSSYD 552 (728)
T ss_pred eeEeeccCccccccccccccccccccccceeeecccceeeeccccchhhhcccceeecch-----hhhhhhhhhhccccc
Confidence 110 000 00000 1222
Q ss_pred ----HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCC-CCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHH
Q 037063 418 ----KGLDHADALGLILISNRARYLINWLANALMNLHHPHSET-GIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPAL 492 (588)
Q Consensus 418 ----~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~-g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~ 492 (588)
.+||+.+.+|+.....|.+.|.+||+..|..+.|+...+ -..++++|+|+....||+-++|++.+..+..+.+..
T Consensus 553 ~~~c~~iDh~~~lgln~t~~r~r~ll~wl~~sl~~~~~~~~~~~~~nlvq~ygpk~~~erG~~~~fnl~d~~~~fr~p~I 632 (728)
T KOG2142|consen 553 CPPCRGIDHVDSLGLNLTTNRGRELLNWLVQSLRNLQHSESSSTTVNLVQIYGPKTKYERGPAVAFNLFDLSKRFRAPII 632 (728)
T ss_pred CccccccchhhhhhHHhhhhhhhhHHHHHHHhcccccccccccccccceeeecCccccccChhheeehhhhhccccchhh
Confidence 378889999999999999999999999998777654321 246899999999999999999999999999999999
Q ss_pred HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhhhcc
Q 037063 493 VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDADFVE 572 (588)
Q Consensus 493 v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~~~~ 572 (588)
|.++.+..+|.++.++..++.+.+.-...+.+.+.++...........+|++++|+.+++||++++|.++.+||+..|++
T Consensus 633 V~~lae~E~isl~~~~l~~iri~dp~~r~~dq~~~~r~~~~~~~~Rl~vvt~~lgfltnfedv~K~w~fv~~fl~pgf~~ 712 (728)
T KOG2142|consen 633 VNKLAEREEISLGELSLGHIRIQDPCHRDIDQLLGQRRGRTNGESRLSVVTARLGFLTNFEDVYKLWEFVARFLDPGFVE 712 (728)
T ss_pred hcchhhhhcccccceeeeeeEEecCcchhhhHHhhhhccccccceeEeeeeeehhhhhchHHHHHHHHHHHHhcChhhhh
Confidence 99999999999988877766554411112233333331110111223489999999999999999999999999999999
Q ss_pred ccccccc
Q 037063 573 KERWRYM 579 (588)
Q Consensus 573 ~~~~~~~ 579 (588)
++.||-.
T Consensus 713 ~~~~~~~ 719 (728)
T KOG2142|consen 713 KVELRTV 719 (728)
T ss_pred hccccch
Confidence 9999976
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=360.68 Aligned_cols=371 Identities=15% Similarity=0.140 Sum_probs=280.8
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
+..+||||+++++.|+.+++++.+++... ++||++.. +.. +....+.++++|+.++
T Consensus 2 ~~~~yld~aa~~~~~~~v~~a~~~~~~~~-~~~~~~~~--------------------~~~---~~~~~~~~~~~r~~la 57 (402)
T TIGR02006 2 KLPIYLDYAATTPVDPRVAEKMMPYLTEK-FGNPASRS--------------------HSF---GWEAEEAVENARNQVA 57 (402)
T ss_pred CccEEeeCCcCCCCCHHHHHHHHHHHHhc-CCCCChhh--------------------hHH---HHHHHHHHHHHHHHHH
Confidence 45799999999999999999987766432 56663210 100 1112567899999999
Q ss_pred HHhCCCCCCceEEEecCHHHHHHHHHHhCC---CCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCH
Q 037063 190 DFMNISEDDYTLVFTANQSSAFKLLAESYP---FYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHS 265 (588)
Q Consensus 190 ~~lga~~~e~~vvft~g~T~al~lv~~s~~---~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~ 265 (588)
+++|+++++ |+||+|+|+++++++.++. .++|++|+ +..+|++....| ..++..|++++.++.+ +++.+++
T Consensus 58 ~~~g~~~~~--v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~--~~~~~~g~~v~~v~~~-~~~~~d~ 132 (402)
T TIGR02006 58 ELIGADSRE--IVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTC--RYLEREGFEVTYLPPK-SNGLIDL 132 (402)
T ss_pred HHhCCCCCe--EEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHH--HHHHhcCCEEEEEccC-CCCcCCH
Confidence 999998765 9999999999999887752 36888865 566777644333 3445679999999988 6788999
Q ss_pred HHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEecc
Q 037063 266 GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSF 344 (588)
Q Consensus 266 e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~ 344 (588)
++|+++++ +++++|++++++|+||.+.|+++| ++|+++|+++++|++|+++ ..++++..+.+|++++|+
T Consensus 133 ~~l~~~l~--------~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g--~~~~~~~~~~~D~~~~s~ 202 (402)
T TIGR02006 133 EELKAAIR--------DDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVG--KIPINVNELKVDLMSISG 202 (402)
T ss_pred HHHHHhcC--------CCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcC--CcccCccccCCCEEEEeh
Confidence 99999987 679999999999999999999999 9999999999999999988 345566667799999999
Q ss_pred CccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHH
Q 037063 345 YKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHAD 424 (588)
Q Consensus 345 ~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~ 424 (588)
||++| |.|+|+++++++....+.+...++ +. .++| +.||+++.++ +++..+|++++
T Consensus 203 ~K~~g--p~G~G~l~~~~~~~~~~~~~~~g~-~~-----------------~~~~-~~gt~~~~~~---~al~~al~~~~ 258 (402)
T TIGR02006 203 HKIYG--PKGIGALYVRRKPRVRLEALIHGG-GH-----------------ERGM-RSGTLPTHQI---VGMGEAFRIAK 258 (402)
T ss_pred hhhcC--CCceEEEEEccCCCCCCCceecCC-Cc-----------------cCCc-cCCCccHHHH---HHHHHHHHHHH
Confidence 99888 899999999988766666655442 21 0145 7899999886 78889999887
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc-cEEEEEeecCCCCCcCHHHHHHHHHhCCcE
Q 037063 425 ALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG-PSLAFNVFDWNGTRIDPALVQKLADRHNIS 503 (588)
Q Consensus 425 ~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg-~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~ 503 (588)
. +++.+.+|.+.|+++++++|+++ ++++++++.. .+. +++.|.+.. ++.+.+...+ ++|.
T Consensus 259 ~-~~~~~~~~~~~l~~~l~~~l~~~---------~~v~~~~~~~--~~~p~~~~v~f~~-----~~~~~~~~~l--~~i~ 319 (402)
T TIGR02006 259 E-EMAQDTAHVLALRDRLLNGIKSI---------EEVYLNGDLE--HRVPGNLNVSFNY-----VEGESLIMAL--KDLA 319 (402)
T ss_pred H-hHHHHHHHHHHHHHHHHHHHhcC---------CCEEEeCCcc--ccCCCeEEEEEeC-----cCHHHHHHhc--CCEE
Confidence 6 68999999999999999999885 6788887642 233 333333333 2345554444 5999
Q ss_pred eccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 504 LSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 504 v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
+++|++|+++....+. .+... +. ......+.||+|+|+|||.|||++++++|+++++..
T Consensus 320 v~~G~~c~~~~~~~~~-----~l~~l-g~-~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~ 378 (402)
T TIGR02006 320 VSSGSACTSASLEPSY-----VLRAL-GI-NDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKL 378 (402)
T ss_pred EechhhcCCCCCCccH-----HHHHc-CC-ChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999875433221 11110 00 000111399999999999999999999999987653
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=358.05 Aligned_cols=377 Identities=20% Similarity=0.282 Sum_probs=290.4
Q ss_pred HHHHHhhhccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCC
Q 037063 96 ADRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGS 175 (588)
Q Consensus 96 ~~~iR~~~f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~ 175 (588)
+.++|+ +||.++....+|||++|.+++|+.+++++.+.+.. ...++.+. ...+ .
T Consensus 3 ~~~~r~-~f~~~~~~~~~yl~~~~~~~~p~~v~~a~~~~~~~-~~~~~~~~-------------------~~~~-----~ 56 (397)
T TIGR01976 3 VEAVRG-QFPALADGDRVFFDNPAGTQIPQSVADAVSAALTR-SNANRGGA-------------------YESS-----R 56 (397)
T ss_pred hhHHHh-hCCcCCCCCeEEecCCccCCCCHHHHHHHHHHHHh-cCCCCCCC-------------------chHH-----H
Confidence 456776 79988421279999999999999999998766532 12232110 0000 0
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhC--CCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEE
Q 037063 176 EESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY--PFYSNPRLLT-VYDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 176 ~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~--~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
...+.++++|+.+++++|+++++ |++++|+|++++++..++ .+++||+|++ ..+|++....| ...++..|++++
T Consensus 57 ~~~~~~~~l~~~ia~~~~~~~~~--v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~-~~~~~~~g~~~~ 133 (397)
T TIGR01976 57 RADQVVDDAREAVADLLNADPPE--VVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPW-LQAAERAGAKVK 133 (397)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCe--EEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHH-HHHHHhcCCEEE
Confidence 12467899999999999997654 999999999999888776 4789999665 56777754444 466788999999
Q ss_pred EEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCC
Q 037063 253 SAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLG 331 (588)
Q Consensus 253 ~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~ 331 (588)
.++++.+++.++.++++++|+ +++++|++++++|+||.++|+++| ++|+++|+++++|++|+.+ ...++
T Consensus 134 ~~~~~~~~~~~~~~~l~~~i~--------~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~--~~~~~ 203 (397)
T TIGR01976 134 WARVDEATGELHPDDLASLLS--------PRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAP--HGLID 203 (397)
T ss_pred EEeccccCCCcCHHHHHHhcC--------CCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhcc--ccCCC
Confidence 999875468899999999997 689999999999999999999999 9999999999999999876 34555
Q ss_pred CCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchh
Q 037063 332 LSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVS 411 (588)
Q Consensus 332 l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~ 411 (588)
+..+++|++++|+||++| |. +|++++++++++.+.+..... .. .. ...+| +.||+++..+
T Consensus 204 ~~~~~~d~~~~s~~K~~g--~~-~G~l~~~~~~~~~l~~~~~~~--~~------------~~-~~~~~-~~gt~~~~~~- 263 (397)
T TIGR01976 204 VQATGADFLTCSAYKFFG--PH-MGILWGRPELLMNLPPYKLTF--SY------------DT-GPERF-ELGTPQYELL- 263 (397)
T ss_pred HHHcCCCEEEEechhhcC--Cc-eEEEEEcHHHHhhCCCccccC--cc------------CC-Ccchh-cCCCCCHHHH-
Confidence 666679999999999998 54 899999999888776654321 10 00 11267 8999998886
Q ss_pred hHHHHHHHHHHHHHhC--------------HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE
Q 037063 412 SKLVECKGLDHADALG--------------LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA 477 (588)
Q Consensus 412 ~~~al~~aL~~l~~~G--------------~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~ 477 (588)
+++..|++++.++| ++++.+|+.+|+++++++|.++ ++++++++.+...+++++.
T Consensus 264 --~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~---------~~~~~~~~~~~~~~~~~~~ 332 (397)
T TIGR01976 264 --AGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDL---------PGVTLYGVARLAARVPTVS 332 (397)
T ss_pred --HHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcC---------CCEEEeCCCCccCCCceEE
Confidence 78889999998876 6888999999999999999885 5688988744345788999
Q ss_pred EEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHH
Q 037063 478 FNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYR 557 (588)
Q Consensus 478 f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~ 557 (588)
|.+.+ .+...+.+.|.++||.++.|++|.+. +.... +. ....+.||||+|+++|.+||++
T Consensus 333 ~~~~~-----~~~~~l~~~L~~~gI~v~~~~~~~~~------------~~~~~--~~-~~~~~~iRis~~~~~t~~di~~ 392 (397)
T TIGR01976 333 FTVHG-----LPPQRVVRRLADQGIDAWAGHFYAVR------------LLRRL--GL-NDEGGVVRVGLAHYNTAEEVDR 392 (397)
T ss_pred EEeCC-----cCHHHHHHHHHHCCeEEEeCccchHH------------HHHHh--CC-CCCCCeEEEEeeccCCHHHHHH
Confidence 98865 45677888888899999999888521 11110 00 0112389999999999999999
Q ss_pred HHHHH
Q 037063 558 LWAFV 562 (588)
Q Consensus 558 li~~l 562 (588)
+++.|
T Consensus 393 l~~~l 397 (397)
T TIGR01976 393 LLEAL 397 (397)
T ss_pred HHHhC
Confidence 99864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=352.75 Aligned_cols=385 Identities=16% Similarity=0.174 Sum_probs=279.5
Q ss_pred hhHHHHHhhhccCCCC---CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccc
Q 037063 94 DQADRIRAQDYFHLSL---NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSW 170 (588)
Q Consensus 94 ~~~~~iR~~~f~~l~~---~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~ 170 (588)
..++.+|+ +||.+.. ++.+|||+++.|+.|..+.+++.+++.. ++++.+.+ +
T Consensus 8 ~~~~~~r~-~f~~~~~~~~~~~iyld~~a~g~~p~~v~~a~~~~~~~--~~~~~~~~----------------------~ 62 (406)
T TIGR01814 8 DPLRALRD-EFHLPKIGDENAVIYLDGNSLGLMPKAARNALKEELDK--WAKIAIRG----------------------H 62 (406)
T ss_pred ChHHHHHH-hcCCCcccCCCCcEEecCCCcCcCcHHHHHHHHHHHHH--HHHhhhcc----------------------C
Confidence 35667885 5986521 4689999999999999999998665532 22221100 0
Q ss_pred cccCC-chhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC---eEEE-cCCCchhHHHHHHHHHH
Q 037063 171 LQYGS-EESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP---RLLT-VYDHENEAAALMIESSK 245 (588)
Q Consensus 171 ~~~g~-~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd---~ll~-~~e~~s~~~~~~~~~a~ 245 (588)
..+. ....+.++. +.+ +++|+++++ |+||+|+|+++++++.++ +++++ +|++ ..+|+++.+.| ...++
T Consensus 63 -~~~~~~~~~~~~~~-~~~-~l~g~~~~~--v~~~~~~t~~l~~~~~~~-~~~~~~~~~i~~~~~~~~s~~~~~-~~~~~ 135 (406)
T TIGR01814 63 -NTGKAPWFTLDESL-LKL-RLVGAKEDE--VVVMNTLTINLHLLLASF-YKPTPKRYKILLEAKAFPSDHYAI-ESQLQ 135 (406)
T ss_pred -ccCCCChhhhhhhh-ccc-cccCCCCCc--EEEeCCchHHHHHHHHHh-cCCcCCccEEEecCCCCChHHHHH-HHHHH
Confidence 0000 012233333 445 899998766 999999999999999998 66643 4554 57888866665 45667
Q ss_pred hcCCEE----EEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCC
Q 037063 246 KRGARV----SSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDAT 320 (588)
Q Consensus 246 ~~G~~v----~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa 320 (588)
+.|+++ +.++.+ .++.++++++++.+.. ..++|++|++++++|.||.++|+++| ++||++|++++||++
T Consensus 136 ~~g~~~~~~~~~~~~~-~~g~~~~~~l~~~~~~-----~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~a 209 (406)
T TIGR01814 136 LHGLTVEESMVQIEPR-EEETLRLEDILDTIEK-----NGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLA 209 (406)
T ss_pred hcCCCcccceEEeccC-CCCccCHHHHHHHHHh-----cCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcc
Confidence 789987 455554 4577899999988851 12689999999999999999999999 999999999999999
Q ss_pred CcCCCCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccc
Q 037063 321 ALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS 400 (588)
Q Consensus 321 ~~~~~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~ 400 (588)
|+++ ..++++..+++||+++|+|||++. |.| |++|++++....+.+...|+.+......... ...+...+ .+|
T Consensus 210 q~~G--~~~id~~~~gvD~~~~s~hK~l~g-~pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~-~~~~~~~~-~~~- 282 (406)
T TIGR01814 210 HAVG--NVPLDLHDWGVDFACWCTYKYLNA-GPG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKM-DNTLGLIP-CGF- 282 (406)
T ss_pred cccC--CcccccccCCCCEEEEcCccccCC-CCC-eEEEEehhhhhhcCCCCCcccCCCCcccccc-ccccCCCc-cce-
Confidence 9998 456777777799999999997643 448 7788877766556665544211111000000 00111112 267
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEe
Q 037063 401 KFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNV 480 (588)
Q Consensus 401 e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~ 480 (588)
+.||+++.++ +++.++|+++.++|++++.+|...|.+++++.|.++. . |.+++++++|.....++++++|.+
T Consensus 283 ~~GT~~~~~~---~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~-~----~~~~~~i~~~~~~~~r~~~v~~~~ 354 (406)
T TIGR01814 283 RISNPPILSV---AALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARC-G----GPPVLTIITPRDHAQRGCQLSLTH 354 (406)
T ss_pred eeCCccHHHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhc-C----CCCceEEeCCCChhhcCCeEEEEe
Confidence 8899999986 8899999999999999999999999999999998741 0 135689998755445788999987
Q ss_pred ecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec-CCCCCHHHHHHHH
Q 037063 481 FDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL-GCLTNFEDTYRLW 559 (588)
Q Consensus 481 ~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl-g~~~t~eDv~~li 559 (588)
+ . +...+.+.|.++||.+... +.+.||+|+ |+|||.+||++++
T Consensus 355 ~-~-----~~~~~~~~L~~~gi~v~~~------------------------------~~~~iRiS~~~~~nt~~did~l~ 398 (406)
T TIGR01814 355 P-V-----PGKAVFQALIKRGVIGDKR------------------------------EPSVIRVAPVPLYNTFVDVYDAV 398 (406)
T ss_pred c-C-----CHHHHHHHHHHCCEEEecc------------------------------CCCeEEEechhccCCHHHHHHHH
Confidence 6 1 3667777788889976321 112899999 7999999999999
Q ss_pred HHHHHhhh
Q 037063 560 AFVSRFLD 567 (588)
Q Consensus 560 ~~l~~~l~ 567 (588)
+.|++++|
T Consensus 399 ~~l~~~~~ 406 (406)
T TIGR01814 399 NVLEEILD 406 (406)
T ss_pred HHHHHHhC
Confidence 99998764
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=342.88 Aligned_cols=370 Identities=14% Similarity=0.122 Sum_probs=276.9
Q ss_pred eeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHH
Q 037063 112 YVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDF 191 (588)
Q Consensus 112 ~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~ 191 (588)
++||||+++|++|+.+++++.+++. ..++||++. +. .+....++++++|+.++++
T Consensus 1 ~~yld~a~~~~~~~~v~~a~~~~~~-~~~~~~~~~---------------------~~---~~~~~~~~~~~~r~~la~~ 55 (381)
T PRK02948 1 MIYLDYAATTPMSKEALQTYQKAAS-QYFGNESSL---------------------HD---IGGTASSLLQVCRKTFAEM 55 (381)
T ss_pred CEeccCCCCCCCCHHHHHHHHHHHH-hcCCCCccc---------------------cH---HHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999876664 345666321 00 1122367899999999999
Q ss_pred hCCCCCCceEEEecCHHHHHHHHHHhCC---CCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHH
Q 037063 192 MNISEDDYTLVFTANQSSAFKLLAESYP---FYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGK 267 (588)
Q Consensus 192 lga~~~e~~vvft~g~T~al~lv~~s~~---~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~ 267 (588)
+|+++++ |+||+|+|+++.+++.++- .++|++|+ +..+|++.... ...++..|++++.++++ +++.+|+++
T Consensus 56 ~g~~~~~--i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~--~~~~~~~g~~v~~v~~~-~~~~~d~~~ 130 (381)
T PRK02948 56 IGGEEQG--IYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSY--FQSLESQGYTVTEIPVD-KSGLIRLVD 130 (381)
T ss_pred hCCCCCe--EEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHH--HHHHHhCCCEEEEEeeC-CCCCCCHHH
Confidence 9997654 9999999999998877761 25688865 56677763332 34567789999999997 668899999
Q ss_pred HHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCc
Q 037063 268 LMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYK 346 (588)
Q Consensus 268 l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K 346 (588)
|++++. +++++|++++++|+||.++|+++| ++|+++|+++++|+++.++ ..++++..+++|++++|+||
T Consensus 131 l~~~l~--------~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g--~~~~~~~~~~~d~~~~s~~K 200 (381)
T PRK02948 131 LERAIT--------PDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFG--KLPIDVFEMGIDSLSVSAHK 200 (381)
T ss_pred HHHhcC--------CCCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhcc--ccccCcccCCCCEEEecHHh
Confidence 999987 678999999999999999999999 9999999999999998887 34555666779999999999
Q ss_pred cCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHh
Q 037063 347 IFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL 426 (588)
Q Consensus 347 ~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~ 426 (588)
++| |.|+|+++++++. .+.+...+ +. .. .+| +.||++++++ +++.++++.+.+
T Consensus 201 ~~g--p~G~G~l~~~~~~--~~~~~~~~--~~-------------~~---~~~-~~~t~~~~~~---~a~~~al~~~~~- 253 (381)
T PRK02948 201 IYG--PKGVGAVYINPQV--RWKPVFPG--TT-------------HE---KGF-RPGTVNVPGI---AAFLTAAENILK- 253 (381)
T ss_pred cCC--CCcEEEEEEcCCC--CCCCcccC--CC-------------CC---CCc-CCCCccHHHH---HHHHHHHHHHHH-
Confidence 999 8899999999875 12222222 10 00 145 7889998886 788899988755
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEecc
Q 037063 427 GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSC 506 (588)
Q Consensus 427 G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~ 506 (588)
+++++.+++..+++++++.|+++ |.. +.+.++. ......+++|++.+ ++.+.+...|+++||.++.
T Consensus 254 ~~~~~~~~~~~~~~~l~~~L~~~-------~~~-v~~~~~~-~~~~~~i~~~~~~~-----~~~~~~~~~l~~~gI~v~~ 319 (381)
T PRK02948 254 NMQEESLRFKELRSYFLEQIQTL-------PLP-IEVEGHS-TSCLPHIIGVTIKG-----IEGQYTMLECNRRGIAIST 319 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-------CCC-EEEeCCC-ccCcCCEEEEEeCC-----CCHHHHHHhcccCCEEEEc
Confidence 47899999999999999999986 222 3333321 12234688888865 4567777777889999999
Q ss_pred ccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 507 GFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 507 G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
|+.|+.++..... .+..- +. ....+.+.||+|+|++||.|||++++++|+++++..
T Consensus 320 g~~c~~~~~~p~~-----~~~~~-~~-~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 375 (381)
T PRK02948 320 GSACQVGKQEPSK-----TMLAI-GK-TYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQF 375 (381)
T ss_pred hHhcCCCCCCCCH-----HHHHc-CC-ChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999765432211 11110 00 000112389999999999999999999999987654
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-38 Score=331.86 Aligned_cols=371 Identities=18% Similarity=0.224 Sum_probs=281.6
Q ss_pred eeecCCCCC-CCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHH
Q 037063 113 VCFDYIGHG-LFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDF 191 (588)
Q Consensus 113 vyLD~a~~g-l~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~ 191 (588)
+|||+++.+ +.|..+++++.+.+.. ..++++.. .... +......++++|+.|+++
T Consensus 1 ~yld~a~~~~~~p~~v~~a~~~~~~~-~~~~~~~~--------------------~~~~---~~~~~~~~~~~~~~la~~ 56 (376)
T TIGR01977 1 IYFDNAATTYPKPDEVYEAMADFYKN-YGGSPGRG--------------------RYRL---ALRASREVEETRQLLAKL 56 (376)
T ss_pred CCccCcccCCCCCHHHHHHHHHHHHh-cCCCCCcc--------------------cchH---HHHHHHHHHHHHHHHHHH
Confidence 699999987 6888999888665532 22233110 0000 001146788999999999
Q ss_pred hCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHH
Q 037063 192 MNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMK 270 (588)
Q Consensus 192 lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~ 270 (588)
+|+++. +.|+||+|+|+++++++.++ +++||+|++ ..+|++....+ ..+++..|++++.++.+ +++.+|.++|++
T Consensus 57 ~~~~~~-~~v~~~~g~t~al~~~~~~~-~~~gd~vl~~~~~~~~~~~~~-~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~ 132 (376)
T TIGR01977 57 FNAPSS-AHVVFTNNATTALNIALKGL-LKEGDHVITTPMEHNSVARPL-ECLKEQIGVEITIVKCD-NEGLISPERIKR 132 (376)
T ss_pred hCcCCC-CeEEEeCCHHHHHHHHHHhc-cCCCCEEEECcchhhHHHHHH-HHHHHHcCcEEEEEecC-CCCCcCHHHHHH
Confidence 999643 35999999999999999997 899999664 55676533333 56677789999999987 567899999999
Q ss_pred HHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCC
Q 037063 271 KIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFG 349 (588)
Q Consensus 271 ~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G 349 (588)
+++ +++++|++++++|+||.++|+++| ++|+++|+++++|+++.++ ..++++..+++|++++|+||+++
T Consensus 133 ~~~--------~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g--~~~~~~~~~~~D~~~~s~~K~l~ 202 (376)
T TIGR01977 133 AIK--------TNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAG--VIPIDMTELAIDMLAFTGHKGLL 202 (376)
T ss_pred hcC--------CCCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccC--ccCCCchhcCCCEEEeccccccc
Confidence 997 679999999999999999999999 9999999999999999988 45666667779999999999776
Q ss_pred CCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHH
Q 037063 350 ENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLI 429 (588)
Q Consensus 350 ~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~ 429 (588)
. |.|+|+++++++. .+++...++.+... ... ........+| +.||+++..+ +++.++++++.+.|++
T Consensus 203 ~-p~g~g~l~~~~~~--~~~~~~~~~~~~~~---~~~---~~~~~~~~r~-~~~t~~~~~~---~a~~~al~~~~~~g~~ 269 (376)
T TIGR01977 203 G-PQGTGGLYIREGI--KLKPLKSGGTGSHS---ALI---DQPSELPDRF-ESGTLNTPGI---AGLNAGIKFIEKIGIA 269 (376)
T ss_pred C-CCCceEEEEcCCc--CcCceecCCCcccc---ccc---cccccchhhc-cCCCCCHHHH---HHHHHHHHHHHHhCHH
Confidence 4 8999999999976 24444433211100 000 0000001267 7899998886 7888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhC-CcEecccc
Q 037063 430 LISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRH-NISLSCGF 508 (588)
Q Consensus 430 ~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~-gI~v~~G~ 508 (588)
.+.+|.+.+++++++.|.++ +++++++|.+...++++++|.+.+ ++...+.+.|.++ ||.++.|.
T Consensus 270 ~~~~~~~~l~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~L~~~~gi~v~~g~ 335 (376)
T TIGR01977 270 NIAKKECMLTEKLLNGLREI---------NKVKIYGPADPANRVGVVSFTVEG-----IDSEEVADILDEKFDIATRTGL 335 (376)
T ss_pred HHHHHHHHHHHHHHHHHhcC---------CCeEEeCCCCccccCCeEEEEECC-----CCHHHHHHHHhccCCEEEEccc
Confidence 99999999999999999874 678999875544568899999875 4577788777766 99999998
Q ss_pred ccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 509 LQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 509 ~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
+|++... ..+.. ...+.||+|++.++|.+||++++++|++
T Consensus 336 ~~~~~~~--------~~~g~--------~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 336 HCAPLAH--------KTIGT--------FATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred ccchHHH--------HHhCC--------CCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 8863210 00000 1123899999999999999999999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=331.65 Aligned_cols=368 Identities=19% Similarity=0.257 Sum_probs=281.8
Q ss_pred eeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHh
Q 037063 113 VCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFM 192 (588)
Q Consensus 113 vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~l 192 (588)
+||||++++++|+.+++++.+++. ..+.||++. .+. .+....+.++++|+.+++++
T Consensus 1 ~yl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------------------~~~---~~~~~~~~~~~~~~~la~~~ 56 (373)
T cd06453 1 VYLDNAATSQKPQPVIDAIVDYYR-HYNANVHRG--------------------VHE---LSARATDAYEAAREKVARFI 56 (373)
T ss_pred CcccCccccCCCHHHHHHHHHHHH-hcCCCCCCC--------------------ccH---HHHHHHHHHHHHHHHHHHHh
Confidence 599999999999999999987764 345565321 000 01123677889999999999
Q ss_pred CCCCCCceEEEecCHHHHHHHHHHhCCCC--CCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHH
Q 037063 193 NISEDDYTLVFTANQSSAFKLLAESYPFY--SNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLM 269 (588)
Q Consensus 193 ga~~~e~~vvft~g~T~al~lv~~s~~~~--~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~ 269 (588)
|++.. ..|++|+|+|+|+++++.++... +|++|+ +..+|++....+ ...++..|++++.++.+ .++.+++++|+
T Consensus 57 ~~~~~-~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~~g~~~~~v~~~-~~~~~d~~~l~ 133 (373)
T cd06453 57 NAPSP-DEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPW-QQLAERTGAKLKVVPVD-DDGQLDLEALE 133 (373)
T ss_pred CCCCC-CeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHH-HHHHhhcCcEEEEeecC-CCCCcCHHHHH
Confidence 99722 34999999999999999998443 889966 455666533333 55667789999999998 67889999999
Q ss_pred HHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccC
Q 037063 270 KKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIF 348 (588)
Q Consensus 270 ~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~ 348 (588)
+++. +++++|++++++|+||...|+++| ++|+++|+++++|+++..+ ..++++...++|++++|+||++
T Consensus 134 ~~l~--------~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~--~~~~~~~~~~~d~~~~s~~K~~ 203 (373)
T cd06453 134 KLLT--------ERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAG--HMPVDVQDLGCDFLAFSGHKML 203 (373)
T ss_pred HHhc--------CCceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcC--ceeeeccccCCCEEEecccccc
Confidence 9998 689999999999999999999999 9999999999999998776 2334444456999999999999
Q ss_pred CCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCH
Q 037063 349 GENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGL 428 (588)
Q Consensus 349 G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~ 428 (588)
| +.|+|+++++++.++.+.+...++ ........ +...+.... .+| +.||+++..+ .++..+++.+.+.|+
T Consensus 204 ~--~~g~g~~~~~~~~~~~~~~~~~g~-~~~~~~~~--~~~~~~~~~-~~~-~~~t~~~~~~---~al~~al~~l~~~g~ 273 (373)
T cd06453 204 G--PTGIGVLYGKEELLEEMPPYGGGG-EMIEEVSF--EETTYADLP-HKF-EAGTPNIAGA---IGLGAAIDYLEKIGM 273 (373)
T ss_pred C--CCCcEEEEEchHHhhcCCCeecCC-Cccccccc--cccccCCCc-ccc-CCCCCCHHHH---HHHHHHHHHHHHcCH
Confidence 9 578999999999988888766443 22221100 000111111 256 6889998875 788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEecccc
Q 037063 429 ILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGF 508 (588)
Q Consensus 429 ~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~ 508 (588)
+.+.++...+++++++.|.++ ++++++.+. ..+++++.|.+.+ ++...+.+.|.++||.++.|.
T Consensus 274 ~~~~~~~~~~~~~l~~~l~~~---------~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~i~~~l~~~gi~i~~g~ 337 (373)
T cd06453 274 EAIAAHEHELTAYALERLSEI---------PGVRVYGDA--EDRAGVVSFNLEG-----IHPHDVATILDQYGIAVRAGH 337 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---------CCeEEeCCc--cccCCeEEEEECC-----cCHHHHHHHHHHCCEEeccCc
Confidence 999999999999999999884 678887543 2457899998765 457788888888999999998
Q ss_pred ccCcccccchHHHHHHHHhhhcCCCCCcCCc-cEEEEecCCCCCHHHHHHHHHHH
Q 037063 509 LQNIFFSGEYEQERVRVLETRSGTNETRSGV-SVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 509 ~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~-~~vRvSlg~~~t~eDv~~li~~l 562 (588)
.|... .+.. .|. ..||+|+|+++|.+|+++|+++|
T Consensus 338 ~~~~~-----------~~~~--------~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 338 HCAQP-----------LMRR--------LGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred cchhH-----------HHHH--------hCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 88421 1111 222 28999999999999999999874
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=334.95 Aligned_cols=371 Identities=16% Similarity=0.139 Sum_probs=274.2
Q ss_pred CeeeecCCCCCCCCHHHHHHhhhhccc-CcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 111 NYVCFDYIGHGLFSYSQMHSCSSNVHS-SAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 111 ~~vyLD~a~~gl~~~~~~~~~~~~~~~-~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
..+||||++++++|+.+++++.+++.. ..++|+++.+. .. +....+.++++|+.++
T Consensus 3 ~~iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~-------------------~~----~~~~~~~~~~~r~~ia 59 (404)
T PRK14012 3 LPIYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSH-------------------RF----GWQAEEAVDIARNQIA 59 (404)
T ss_pred ceEEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhh-------------------HH----HHHHHHHHHHHHHHHH
Confidence 469999999999999999998776631 23456532110 00 0112467889999999
Q ss_pred HHhCCCCCCceEEEecCHHHHHHHHHHhCC---CCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCH
Q 037063 190 DFMNISEDDYTLVFTANQSSAFKLLAESYP---FYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHS 265 (588)
Q Consensus 190 ~~lga~~~e~~vvft~g~T~al~lv~~s~~---~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~ 265 (588)
+++|+++++ |+||+|+|+|+++++.++. +++||+|+ +..+|+++...+ ..++..|++++.++.+ +++.+|+
T Consensus 60 ~~~g~~~~~--v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~--~~~~~~g~~~~~v~~~-~~g~~d~ 134 (404)
T PRK14012 60 DLIGADPRE--IVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTC--RQLEREGFEVTYLDPQ-SNGIIDL 134 (404)
T ss_pred HHcCcCcCe--EEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHH--HHHHhCCCEEEEEccC-CCCcCCH
Confidence 999998765 9999999999999887653 57899965 567887644433 2345679999999998 6788999
Q ss_pred HHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEecc
Q 037063 266 GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSF 344 (588)
Q Consensus 266 e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~ 344 (588)
++|+++|+ +++++|++++++|+||.++|+++| ++|+++|++|++|++|.++ ..++++....+|++++|+
T Consensus 135 ~~l~~~i~--------~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g--~~~~~~~~~~~D~~~~s~ 204 (404)
T PRK14012 135 EKLEAAMR--------DDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVG--KVPIDLSKLKVDLMSFSA 204 (404)
T ss_pred HHHHHhcC--------CCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcC--CcccCcccCCCCEEEEeh
Confidence 99999998 789999999999999999999999 9999999999999999887 234445555699999999
Q ss_pred CccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHH
Q 037063 345 YKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHAD 424 (588)
Q Consensus 345 ~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~ 424 (588)
||++| |.|+|+++++++...++.+...|+ +.. .+| +.||+++..+ .++.++++.++
T Consensus 205 ~K~~g--p~g~G~l~~~~~~~~~~~~~~~g~-~~~-----------------~~~-~~gt~~~~~~---~~l~~al~~~~ 260 (404)
T PRK14012 205 HKIYG--PKGIGALYVRRKPRVRLEAQMHGG-GHE-----------------RGM-RSGTLPTHQI---VGMGEAARIAK 260 (404)
T ss_pred hhccC--CCceEEEEEecCCCCCCCceecCC-Ccc-----------------CCc-cCCCcCHHHH---HHHHHHHHHHH
Confidence 99888 889999999998655565554442 210 145 6788888775 67888888776
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCC-CcccEEEEEeecCCCCCcCHHHHHHHHHhCCcE
Q 037063 425 ALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMF-DRGPSLAFNVFDWNGTRIDPALVQKLADRHNIS 503 (588)
Q Consensus 425 ~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~-~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~ 503 (588)
. +++.+.+|.+.|++++.+.|+++ ++++++++.... .....+.|.+.+ .+.+...| ++|.
T Consensus 261 ~-~~~~~~~~~~~l~~~l~~~L~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l--~~~~ 321 (404)
T PRK14012 261 E-EMATENERIRALRDRLWNGIKDI---------EEVYLNGDLEQRVPGNLNVSFNYVE-------GESLIMAL--KDLA 321 (404)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHhcC---------CCEEEeCCccccCCCEEEEEEeCcC-------HHHHHHhC--CCeE
Confidence 5 57888999999999999999874 667777643211 111245555432 34444444 4899
Q ss_pred eccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 504 LSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 504 v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
|++|.+|.+......... ..+.. ......+.||+|+|+++|.+||+++++.|+++++..
T Consensus 322 i~~g~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~ 380 (404)
T PRK14012 322 VSSGSACTSASLEPSYVL--RALGL-----NDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKL 380 (404)
T ss_pred EEchhhhCCCCCCCCHHH--HHcCC-----ChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999976543322111 00100 000112399999999999999999999999987654
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=316.15 Aligned_cols=320 Identities=16% Similarity=0.148 Sum_probs=252.1
Q ss_pred eecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHhC
Q 037063 114 CFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMN 193 (588)
Q Consensus 114 yLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lg 193 (588)
||||++++++|+.+++++.+++.. .++||++.. +. ++....+.++++|+.+++++|
T Consensus 1 yld~a~~~~~~~~v~~a~~~~~~~-~~~~~~~~~--------------------~~---~~~~~~~~~~~~r~~la~~~g 56 (353)
T TIGR03235 1 YLDHNATTPIDPAVAEAMLPWLLE-EFGNPSSRT--------------------HE---FGHNAKKAVERARKQVAEALG 56 (353)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-cCCCCCchh--------------------hH---HHHHHHHHHHHHHHHHHHHhC
Confidence 899999999999999999776632 345663210 00 111235778999999999999
Q ss_pred CCCCCceEEEecCHHHHHHHHHHhCC---CCCC-CeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHH
Q 037063 194 ISEDDYTLVFTANQSSAFKLLAESYP---FYSN-PRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKL 268 (588)
Q Consensus 194 a~~~e~~vvft~g~T~al~lv~~s~~---~~~g-d~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l 268 (588)
+++++ |+||+|+|+++++++.++. .++| ++|+ ...+|++....| ..++..|++++.++++ +++.+++++|
T Consensus 57 ~~~~~--v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~--~~~~~~G~~v~~v~~~-~~~~~d~~~l 131 (353)
T TIGR03235 57 ADTEE--VIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPI--RALERNGFTVTYLPVD-ESGRIDVDEL 131 (353)
T ss_pred CCCCe--EEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHH--HHHHhcCCEEEEEccC-CCCcCCHHHH
Confidence 98765 9999999999999988762 2456 5555 567787744443 3446679999999997 5678999999
Q ss_pred HHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCcc
Q 037063 269 MKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKI 347 (588)
Q Consensus 269 ~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~ 347 (588)
+++++ +++++|++++++|+||.++|+++| ++|+++|+++++|++|.++ ..++++..+++|++++|+||+
T Consensus 132 ~~~l~--------~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g--~~~~~~~~~~~D~~~~s~~K~ 201 (353)
T TIGR03235 132 ADAIR--------PDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVG--KITVDLSADRIDLISCSGHKI 201 (353)
T ss_pred HHhCC--------CCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcC--CccccccccCCCEEEeehhhc
Confidence 99987 679999999999999999999999 9999999999999999988 455667777799999999999
Q ss_pred CCCCCCceEEEEEeCcchhc--ccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHH
Q 037063 348 FGENPSGFGCLFVKKSSASV--LSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADA 425 (588)
Q Consensus 348 ~G~~P~G~G~L~v~~~~~~~--l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~ 425 (588)
+| |.|+|+|+++++.... +++...++ +. ..+| +.||+++..+ +++.++++++.+
T Consensus 202 ~g--p~g~g~l~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~-~~gt~~~~~~---~al~~al~~~~~ 257 (353)
T TIGR03235 202 YG--PKGIGALVIRKRGKPKAPLKPIMFGG-GQ-----------------ERGL-RPGTLPVHLI---VGMGEAAEIARR 257 (353)
T ss_pred CC--CCceEEEEEccCcccccccCceeeCC-CC-----------------cCcc-ccCCCChHHH---HHHHHHHHHHHh
Confidence 88 8899999999986432 44444331 11 0145 7899999886 788899998764
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEec
Q 037063 426 LGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLS 505 (588)
Q Consensus 426 ~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~ 505 (588)
|++++.+|+++|+++++++|.+ ++++++++.. ....++++|.+.+ ++.+.+.+.|++ +|.++
T Consensus 258 -~~~~~~~~~~~l~~~l~~~l~~----------~g~~~~~~~~-~~~~~i~~~~~~~-----~~~~~v~~~L~~-~i~v~ 319 (353)
T TIGR03235 258 -NAQAWEVKLRAMRNQLRDALQT----------LGVKLNGDPA-ETIPHILNFSIDG-----VNSEALIVNLRA-DAAVS 319 (353)
T ss_pred -hHHHHHHHHHHHHHHHHHHhcc----------CCeEEeCCcc-cccCCEEEEEeCC-----cCHHHHHHHHhC-CeEEE
Confidence 8899999999999999999976 3678887543 2346789998765 567888888865 99999
Q ss_pred cccccCccc
Q 037063 506 CGFLQNIFF 514 (588)
Q Consensus 506 ~G~~c~~~~ 514 (588)
+|..|..+.
T Consensus 320 ~g~~~~~~~ 328 (353)
T TIGR03235 320 TGSACSSSK 328 (353)
T ss_pred chhhcCCCC
Confidence 999997543
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=314.51 Aligned_cols=360 Identities=15% Similarity=0.093 Sum_probs=263.2
Q ss_pred cCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHH
Q 037063 105 FHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKI 184 (588)
Q Consensus 105 ~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~ 184 (588)
|.+. +..+|||.+.+++.|..|++++...+ .++.|. +....++++++
T Consensus 7 ~~~~-~~~~~f~~Gp~~~~~~~v~~a~~~~~----~~~~hr----------------------------~~~f~~~~~~~ 53 (378)
T PRK03080 7 PALR-PADPRFSSGPCKKRPGWQLEALADAL----LGRSHR----------------------------QKPVKALLKRV 53 (378)
T ss_pred CCcC-CCCCCcCCCCcCCChHHHHHHHHhhh----cccCcC----------------------------CHHHHHHHHHH
Confidence 4443 56889999999999988999975332 222210 01126889999
Q ss_pred HHHHHHHhCCCCCCceEEEec-CHHHHHHHHHHhCCCCC-CCeEEEcCCCchhHHHHHHHHHHhcCC-EEEEEeccCCCC
Q 037063 185 RKRIMDFMNISEDDYTLVFTA-NQSSAFKLLAESYPFYS-NPRLLTVYDHENEAAALMIESSKKRGA-RVSSAEFAWPNL 261 (588)
Q Consensus 185 r~~ia~~lga~~~e~~vvft~-g~T~al~lv~~s~~~~~-gd~ll~~~e~~s~~~~~~~~~a~~~G~-~v~~v~~~~~~~ 261 (588)
|+.+++++|++ ++++|+|++ |+|+++++++.++ +++ ++.++...+|.+ .|....+++.|+ +++.++.+ .+.
T Consensus 54 r~~l~~l~~~~-~~~~v~~~~gs~T~~~~~~~~~l-~~~~~~~vi~~g~f~~---~~~~~~~~~~g~~~v~~~~~~-~g~ 127 (378)
T PRK03080 54 IEGTRELLSLP-EGYEVGIVPGSDTGAWEMALWSL-LGARRVDHLAWESFGS---KWATDVVKQLKLEDPRVLEAD-YGS 127 (378)
T ss_pred HHHHHHHhCCC-CCceEEEECCchHHHHHHHHHhc-CCCCcceEEEeCHHHH---HHHHHHHhhcCCCCceEeccC-CCC
Confidence 99999999995 345699885 9999999999999 775 445666666654 353334567899 99999887 344
Q ss_pred ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEE
Q 037063 262 RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFL 340 (588)
Q Consensus 262 ~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~v 340 (588)
.+++++ ++ . +++|+++|++|.||.++|+++| + |++|++++||++|+++ ..+++++. +||+
T Consensus 128 ~~d~~~----i~--------~-~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G--~~pidv~~--iD~~ 188 (378)
T PRK03080 128 LPDLSA----VD--------F-DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAF--ALPLDWSK--LDVY 188 (378)
T ss_pred CCCHhh----cC--------C-CCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccc--cCCCCHHH--CcEE
Confidence 566554 33 2 5679999999999999999999 6 8899999999999999 67777765 7999
Q ss_pred EeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccc-cccccccccccCCCCCccchhhHHHHHHH
Q 037063 341 ICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIE-LETLDESSQSKFPESSISGVSSKLVECKG 419 (588)
Q Consensus 341 v~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~-~~~~~~~~f~e~GT~~~~~~~~~~al~~a 419 (588)
++|+|||++. |.|+|+||+++++++++.+...++ +..... +... ..... .+| +.||++.+++..+.++.++
T Consensus 189 ~~s~~K~l~~-P~G~g~l~v~~~~~~~~~p~~~~~-~~~~~~----~~~~~~~~~~-~~~-~~~t~~tp~i~~i~~l~~a 260 (378)
T PRK03080 189 TFSWQKVLGG-EGGHGMAILSPRAVERLESYTPAR-PIPKFF----RLTKGGKAIE-NSF-KGQTINTPSMLTVEDYLDQ 260 (378)
T ss_pred EEehhhhCCC-CCceEEEEECHHHHHhhhcccCCC-CCchhh----eeccchHHhh-hhh-cCCcccCchHHHHHHHHHH
Confidence 9999998874 899999999999998888765442 110000 0000 00001 145 5667666666556788999
Q ss_pred HHHHHHh-CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc-cEEEEEeecCCCCCcCHHHHHHHH
Q 037063 420 LDHADAL-GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG-PSLAFNVFDWNGTRIDPALVQKLA 497 (588)
Q Consensus 420 L~~l~~~-G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg-~iv~f~~~~~~g~~i~~~~v~~~l 497 (588)
|+++.+. |++++.+|.+.|++++++.|+++ ++++++.+.. ..++ .+++|++++.+ ..++.+.+.+++
T Consensus 261 l~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~---------~~~~~~~~~~-~~~s~~i~~~~~~~~~-~~~~~~~~~~l~ 329 (378)
T PRK03080 261 LDWANSIGGLDALIARTAANASVLYDWAEKT---------PWATPLVADP-ATRSNTSVTLDFVDAQ-AAVDAAAVAKLL 329 (378)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC---------CCcccccCCc-cccCccEEEEEcCCch-HHHHHHHHHHHH
Confidence 9999998 89999999999999999999985 4567775422 2344 68999876511 012344444544
Q ss_pred HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 498 DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 498 ~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
++||.++.|.+|. . .+ .||+|+++|||.+||++++++|++.+++
T Consensus 330 -~~~i~v~~g~~~~----------------~--------~~--~vRis~~~~~t~~di~~l~~al~~~~~~ 373 (378)
T PRK03080 330 -RENGAVDIEPYRD----------------A--------PN--GLRIWCGPTVEPADVEALTPWLDWAFER 373 (378)
T ss_pred -HcCCeeccccccC----------------C--------CC--cEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 5589998875541 0 12 8999999999999999999999987653
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=300.56 Aligned_cols=361 Identities=14% Similarity=0.067 Sum_probs=272.8
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
++..||.+.|-...++.+++++.+.+.. | . . ....++++++|+.++
T Consensus 7 ~~~~~l~~pGP~~~~~~V~~a~~~~~~~------~------------------~----~------~~~~~~~~~~~~~l~ 52 (401)
T PLN02409 7 PGRNHLFVPGPVNIPERVLRAMNRPNED------H------------------R----S------PAFPALTKELLEDVK 52 (401)
T ss_pred CCCceeccCCCCCCCHHHHHHhcCCCCC------C------------------C----C------HHHHHHHHHHHHHHH
Confidence 4567899999999999999997533210 0 0 0 012578999999999
Q ss_pred HHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHH
Q 037063 190 DFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKL 268 (588)
Q Consensus 190 ~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l 268 (588)
+++|++++ +.+++++++|+++..++.++ +++||+|+ +..+|++ ..| ...+++.|++++.++.++ +..++.++|
T Consensus 53 ~~~g~~~~-~~vi~~~~gt~a~~~a~~~~-~~~Gd~Vlv~~~~~~~--~~~-~~~~~~~g~~v~~v~~~~-~~~~~~~~l 126 (401)
T PLN02409 53 YIFKTKSG-TPFIFPTTGTGAWESALTNT-LSPGDKVVSFRIGQFS--LLW-IDQMQRLNFDVDVVESPW-GQGADLDIL 126 (401)
T ss_pred HHhCCCCC-CEEEEeCCcHHHHHHHHHhc-CCCCCEEEEeCCCchh--HHH-HHHHHHcCCceEEEECCC-CCCCCHHHH
Confidence 99999743 46999999999999999888 89999965 5667774 445 567888999999999974 345899999
Q ss_pred HHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HH--HHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccC
Q 037063 269 MKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SV--AAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFY 345 (588)
Q Consensus 269 ~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~--a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~ 345 (588)
+++++. ...+++++|+++|++|+||.++|+++| ++ |+++|+++++|++|+++ ..++++..+++|++++|+|
T Consensus 127 ~~~l~~----~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g--~~~id~~~~~~D~~~~s~~ 200 (401)
T PLN02409 127 KSKLRQ----DTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIG--ALDFRMDEWGVDVALTGSQ 200 (401)
T ss_pred HHHHhh----CcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccC--CccccccccCccEEEEcCc
Confidence 999971 001279999999999999999999999 99 99999999999999987 4566666677999999999
Q ss_pred ccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHH
Q 037063 346 KIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADA 425 (588)
Q Consensus 346 K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~ 425 (588)
|+++. |.|+|+|++++++++++.+..... ...+... ...+... ..+ +.+|+++..+ +++..+++++.+
T Consensus 201 K~l~~-P~G~G~l~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~--g~~-~~~Tp~~~~~---~al~~al~~~~~ 268 (401)
T PLN02409 201 KALSL-PTGLGIVCASPKALEASKTAKSPR-VFFDWAD----YLKFYKL--GTY-WPYTPSIQLL---YGLRAALDLIFE 268 (401)
T ss_pred cccCc-CCCcceeEECHHHHHHHhcCCCCC-eecCHHH----HHHHHhc--CCC-CCCCccHHHH---HHHHHHHHHHHH
Confidence 97764 889999999999888776532110 0000000 0000000 012 3568887775 889999999999
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc-cEEEEEeecCCCCCcCHHHHH-HHHHhCCcE
Q 037063 426 LGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG-PSLAFNVFDWNGTRIDPALVQ-KLADRHNIS 503 (588)
Q Consensus 426 ~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg-~iv~f~~~~~~g~~i~~~~v~-~~l~~~gI~ 503 (588)
.|++++.+|.+.|++++++.|.++ +++++++.. ..+. .+++|.++. | ++...+. ++++++||.
T Consensus 269 ~G~e~i~~~~~~l~~~l~~~L~~~----------g~~~~~~~~-~~~s~~v~~~~~p~--~--~~~~~l~~~l~~~~~i~ 333 (401)
T PLN02409 269 EGLENVIARHARLGEATRLAVEAW----------GLKLCTKKP-EWRSDTVTAVVVPE--G--IDSAEIVKNAWKKYNLS 333 (401)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc----------CCeeccCCh-hhcccceEEEeCCC--C--CCHHHHHHHHHHhCCEE
Confidence 999999999999999999999875 467777533 2345 455576653 1 5566665 566788999
Q ss_pred eccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 504 LSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 504 v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
++.|... .....+||+...|++.+||.+++++|.+.|++.
T Consensus 334 i~~G~~~--------------------------~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~ 373 (401)
T PLN02409 334 LGLGLNK--------------------------VAGKVFRIGHLGNVNELQLLGALAGVEMVLKDV 373 (401)
T ss_pred EEcCCCc--------------------------ccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9887322 111289999999999999999999999988763
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=287.50 Aligned_cols=320 Identities=14% Similarity=0.123 Sum_probs=242.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.+..+++|+.+++++|+++ ++.+++|+|+|+|+++++.++ +++|++|++. ..|+++ .+ ...++..|++++.++.
T Consensus 31 ~~~~~~~~~~la~~~g~~~-~~~~~~~~~~t~al~~~~~~~-~~~g~~vl~~~~~~~~~--~~-~~~~~~~g~~~~~v~~ 105 (356)
T cd06451 31 LALMDEILEGLRYVFQTEN-GLTFLLSGSGTGAMEAALSNL-LEPGDKVLVGVNGVFGD--RW-ADMAERYGADVDVVEK 105 (356)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCEEEEecCcHHHHHHHHHHh-CCCCCEEEEecCCchhH--HH-HHHHHHhCCCeEEeec
Confidence 5678899999999999953 346889999999999999999 7899997654 445542 23 3566788999999998
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCC-cceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKK-KRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSL 334 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~-~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~ 334 (588)
+ +++.++.+++++.++ + ++++|++++++|++|.+.|+++| ++|+++|+++++|+++.++ ..++++..
T Consensus 106 ~-~~~~~~~~~l~~~i~--------~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g--~~~~~~~~ 174 (356)
T cd06451 106 P-WGEAVSPEEIAEALE--------QHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLG--GEPFRMDE 174 (356)
T ss_pred C-CCCCCCHHHHHHHHh--------ccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhcc--Cccccccc
Confidence 7 567899999999997 4 78999999999999999999999 9999999999999998876 23344445
Q ss_pred CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccC--CCCCCCceEeeecCCCcccccccccccccccCCCCCccchhh
Q 037063 335 FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSG--STSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSS 412 (588)
Q Consensus 335 ~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~--~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~ 412 (588)
+++|++++|+||+||. |.|+|++++++++++.+.. ...+ +...... ..+......+ +.||+++..+
T Consensus 175 ~~~d~~~~s~~K~l~~-p~g~G~l~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~-~~~t~~~~~~-- 242 (356)
T cd06451 175 WGVDVAYTGSQKALGA-PPGLGPIAFSERALERIKKKTKPKG--FYFDLLL------LLKYWGEGYS-YPHTPPVNLL-- 242 (356)
T ss_pred cCccEEEecCchhccC-CCCcceeEECHHHHHHHHhcCCCCc--eeecHHH------HHhhhcccCC-CCCCChHHHH--
Confidence 5699999999998885 8899999999998877653 1111 1100000 0000001023 6778887765
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHH
Q 037063 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPAL 492 (588)
Q Consensus 413 ~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~ 492 (588)
+++.++++++.+.|++++.++.+.+++++++.|..+ +++++++.. .+++++.+...+. + ++...
T Consensus 243 -~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~~--~~~~~~~~~~~~~-~--~~~~~ 306 (356)
T cd06451 243 -YALREALDLILEEGLENRWARHRRLAKALREGLEAL----------GLKLLAKPE--LRSPTVTAVLVPE-G--VDGDE 306 (356)
T ss_pred -HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc----------CCeeccCcc--cCCCceEEEECCC-C--CCHHH
Confidence 678899999988899999999999999999999984 356665422 3455554433221 1 45677
Q ss_pred HHHHHHhC-CcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 493 VQKLADRH-NISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 493 v~~~l~~~-gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
+.+.|.++ ||.++.|..|. ..+ +||+|++.++|.|||++++++|+++++
T Consensus 307 ~~~~L~~~~gI~~~~g~~~~------------------------~~~--~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 307 VVRRLMKRYNIEIAGGLGPT------------------------AGK--VFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred HHHHHHHhCCEEEecccccc------------------------cCC--EEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 77777776 99998875431 012 899999999999999999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=292.15 Aligned_cols=341 Identities=14% Similarity=0.171 Sum_probs=238.4
Q ss_pred CCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHhCCCC
Q 037063 117 YIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMNISE 196 (588)
Q Consensus 117 ~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lga~~ 196 (588)
++|..+.|+.|++++.+++.. ++|++... +. .++ ...+..++++++|+.++++||++
T Consensus 4 ~pGp~~~p~~V~~a~~~~~~~--~~~~~rg~----------~~--------~~~--r~~~~~~~~~~~r~~l~~l~~~~- 60 (355)
T cd00611 4 SAGPAALPEEVLEQAQKELLD--FNGLGMSV----------ME--------MSH--RSKDFEAIVNEAESDLRELLNIP- 60 (355)
T ss_pred CCCCCCCCHHHHHHHHHHHhh--cccCCccc----------cc--------cCC--CCHHHHHHHHHHHHHHHHHhCCC-
Confidence 378889999999999877632 23553110 11 110 01122588999999999999984
Q ss_pred CCceEEEecC-HHHHHHHHHHhCCCC---CCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCcc-C-HHHHHH
Q 037063 197 DDYTLVFTAN-QSSAFKLLAESYPFY---SNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRI-H-SGKLMK 270 (588)
Q Consensus 197 ~e~~vvft~g-~T~al~lv~~s~~~~---~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i-~-~e~l~~ 270 (588)
++++|+||+| +|+|+++++.++ +. +|++|++ ..+ ...+ .+.+++.|++++.++.+ +++.. + .+..+.
T Consensus 61 ~~~~vvf~~gs~T~a~~~~~~~l-~~~~~~~~~i~~-g~~---~~~~-~~~a~~~g~~~~~~~~~-~~g~~~~~~~~~~~ 133 (355)
T cd00611 61 DNYKVLFLQGGATGQFAAVPLNL-LGDKGTADYVVT-GAW---SAKA-AKEAKRYGGVVVIVAAK-EEGKYTKIPDVETW 133 (355)
T ss_pred CCceEEEEcCCchHHHHHHHHhc-CCCCCeEEEEEC-CHH---HHHH-HHHHHhcCCCcEEEecc-cccCCCCCCCHhhc
Confidence 4467999988 999999999999 55 4444443 121 1223 56778899999999986 33222 3 222223
Q ss_pred HHhhhccccCCCcceEEEEeCCCCCCCccCCHHHHHHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCCC
Q 037063 271 KIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGE 350 (588)
Q Consensus 271 ~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G~ 350 (588)
.++ +++++|+++|.+|.||.+++ ++++.+|++++||++|+++ ..++|++.+ |++++|.||++|
T Consensus 134 ~~~--------~~~~lV~~~h~~t~tG~~~~----~i~~~~g~~~~VDa~qs~g--~~~idv~~~--~~~~ss~~K~lG- 196 (355)
T cd00611 134 DLA--------PDAAYVHYCSNETIHGVEFD----EVPDTGGVPLVADMSSNIL--SRPIDVSKF--GVIYAGAQKNLG- 196 (355)
T ss_pred CCC--------CCCCEEEEeCCcccccEEcc----eecccCCCeEEEEcccccc--CCCCCHHHh--CEEEeecccccC-
Confidence 333 78999999999999999843 3445599999999999998 566776653 455677999998
Q ss_pred CCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHh-CHH
Q 037063 351 NPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL-GLI 429 (588)
Q Consensus 351 ~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~-G~~ 429 (588)
|.|+|++++++++++++.+.... ... ...... .....||+|+.++ +++.+||+++.++ |++
T Consensus 197 -P~G~g~l~~~~~~~~~~~~~~~~---~~~-------~~~~~~----~~~~~~Tpn~~~i---~~L~aal~~l~~~gg~e 258 (355)
T cd00611 197 -PAGVTVVIVRKDLLGKARKITPS---MLN-------YKTHAD----NNSLYNTPPTFAI---YMMGLVLKWLKEQGGVE 258 (355)
T ss_pred -CCceEEEEECHHHHhhcccCCCC---ccc-------HHHHHh----cCCCCCCChHHHH---HHHHHHHHHHHHcCCHH
Confidence 88999999999998877664321 110 000001 1113689999886 8999999999999 799
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEe-CCCCCCCcc-cEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccc
Q 037063 430 LISNRARYLINWLANALMNLHHPHSETGIPLVRIY-GPKVMFDRG-PSLAFNVFDWNGTRIDPALVQKLADRHNISLSCG 507 (588)
Q Consensus 430 ~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~-~p~~~~~rg-~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G 507 (588)
++.+|.+.|++++++.|.++ |++ | .+..+..|. .+++|++.+. .+. ..+...+.+.||.+..|
T Consensus 259 ~i~~~~~~l~~~l~~~l~~~---------~gl--~~~~~~~~~rs~~vvsf~~~~~---~l~-~~~~~~~~r~G~~~~~~ 323 (355)
T cd00611 259 AMEKRNRQKAQLLYDTIDNS---------NGF--YRGPVDKRARSRMNVPFRLGKE---ELE-KEFLKEAEAAGMIGLKG 323 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhC---------ccc--cccCCCHHHcCceEEEEEcCCh---hhh-HHHHHHHHHCCCcccCC
Confidence 99999999999999999985 453 3 222222455 5699998762 011 23333455567754433
Q ss_pred cccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 508 FLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 508 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
.. ..| .||+|+++|||.|||++|+++|+++
T Consensus 324 ~~--------------------------~~g--~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 324 HR--------------------------SVG--GIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred Cc--------------------------ccC--eEEEEccCCCCHHHHHHHHHHHHHH
Confidence 10 023 8999999999999999999999885
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-31 Score=276.79 Aligned_cols=341 Identities=14% Similarity=0.142 Sum_probs=244.6
Q ss_pred CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHhCCCCCCce
Q 037063 121 GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMNISEDDYT 200 (588)
Q Consensus 121 gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lga~~~e~~ 200 (588)
++.|..|++++.+++.. +.|.+.+. +.+++++ .+-.++++++|+.++++|+++ ++|+
T Consensus 1 ~~~p~~v~~~~~~~~~~--~~~~~~~~----------~~~~hr~----------~~f~~~~~~~~~~l~~l~~~~-~~~~ 57 (349)
T TIGR01364 1 AALPEEVLEQAQKELLN--FNGTGMSV----------MEISHRS----------KEFEAVANEAESDLRELLNIP-DNYE 57 (349)
T ss_pred CCCCHHHHHHHHHHHhC--ccCCCccc----------cccCCCc----------hHHHHHHHHHHHHHHHHhCCC-CCce
Confidence 36899999998777632 22432211 1111110 111489999999999999984 4467
Q ss_pred EEEecC-HHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCC---CCccCHHHHHHHHhhh
Q 037063 201 LVFTAN-QSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWP---NLRIHSGKLMKKIVGK 275 (588)
Q Consensus 201 vvft~g-~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~---~~~i~~e~l~~~i~~~ 275 (588)
|+|++| +|+|++.++.++ +.+|++++ .....++ ..| .+.|++.|+ +..+..+.. ...+++++++ ++
T Consensus 58 v~~~~gsgT~a~ea~~~nl-~~~~~~~l~i~~G~fg--~r~-~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~-- 128 (349)
T TIGR01364 58 VLFLQGGATGQFAAVPLNL-LAEGKVADYIVTGAWS--KKA-AKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--IS-- 128 (349)
T ss_pred EEEEcCCchHHHHHHHHhc-CCCCCeEEEEECCHHH--HHH-HHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CC--
Confidence 888876 999999999999 77898843 4444442 334 788999999 777775411 1124444433 22
Q ss_pred ccccCCCcceEEEEeCCCCCCCccCCHHHHHHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCCCCCCce
Q 037063 276 RKKKKKKKRGLFVFPLQSKVTGARYSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGF 355 (588)
Q Consensus 276 ~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~ 355 (588)
+++++|+++|.++.||+.+| ++++.++++++||++|+++ ..+++++. .||+++|.||++| |.|+
T Consensus 129 ------~~~~~v~~th~ETstGv~~~----~l~~~~~~l~iVDavss~g--~~~id~~~--~d~~~~ssqK~lg--P~Gl 192 (349)
T TIGR01364 129 ------EDAAYVHYCANETIHGVEFR----ELPDVKNAPLVADMSSNIL--SRPIDVSK--FGLIYAGAQKNIG--PAGL 192 (349)
T ss_pred ------CCCCEEEEcCCCCcccEecc----eecccCCCeEEEEcccccc--CccCCHHH--ccEEEEecccccC--CCce
Confidence 57999999999999999988 5566689999999999998 56777665 5799999999998 8899
Q ss_pred EEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHh-CHHHHHHH
Q 037063 356 GCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL-GLILISNR 434 (588)
Q Consensus 356 G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~-G~~~i~~r 434 (588)
|++++++++++++.+.... ..+ ...... .....|||++..+ +++.++|+++.++ |++++.+|
T Consensus 193 g~l~~s~~~~~~~~~~~~~---~~~-------~~~~~~----~~~~~~Tp~~~~i---~al~~al~~l~~~gG~e~i~~r 255 (349)
T TIGR01364 193 TVVIVRKDLLGRASRITPS---MLN-------YKIHAE----NDSMYNTPPTFAI---YVSGLVFKWLKEQGGVKAIEKR 255 (349)
T ss_pred EEEEECHHHHhhcccCCCC---cch-------HHHHHh----cCCCCCCCcHHHH---HHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887663211 110 000000 0113579998886 8999999999999 79999999
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc-cEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcc
Q 037063 435 ARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG-PSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIF 513 (588)
Q Consensus 435 ~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg-~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~ 513 (588)
.+.|++++++.|+++ +++..+.. .+..++ .+++|++.+. .+. ..+.+.+.+.||.+..|..
T Consensus 256 ~~~l~~~l~~~l~~~---------~gl~~~~~-~~~~rs~~v~sf~~~~~---~~~-~~~~~~~~~~Gi~~~~~~~---- 317 (349)
T TIGR01364 256 NQAKAQLLYDTIDNS---------NGFYRNPV-DPRNRSRMNVVFTLGNE---ELE-KRFLKEAEERGLVSLKGHR---- 317 (349)
T ss_pred HHHHHHHHHHHHHhC---------CCeeccCC-CHHHcCCeEEEEecCCh---hHh-HHHHHHHHHCCCcccCCcc----
Confidence 999999999999996 45444432 112355 6789998752 122 4454566778886665521
Q ss_pred cccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 514 FSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 514 ~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
..| .||+|++.|||.|||++|+++|++++++
T Consensus 318 ----------------------~~g--~vRvS~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 318 ----------------------SVG--GMRASIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred ----------------------ccC--eeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 023 8999999999999999999999997754
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-30 Score=273.19 Aligned_cols=323 Identities=12% Similarity=0.069 Sum_probs=237.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCe-EEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPR-LLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~-ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.+.++++|+.+++++|+++++..|+||+|+|+|+++++.++ +.+|++ |+....++. .. +...+++.|++++.++.
T Consensus 34 ~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l-~~~~~~vlv~~~~~~~--~~-~~~~a~~~g~~~~~v~~ 109 (363)
T TIGR02326 34 NIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSA-VPKDGKLLVVINGAYG--AR-IVQIAEYLGIPHHVVDT 109 (363)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhc-CCCCCeEEEEeCChhh--HH-HHHHHHHcCCceEEEeC
Confidence 56789999999999999765446999999999999999999 677777 443333332 11 24667889999999998
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ +++.+++++++++++. .+++++|++++++|+||.++|+++| ++||++|++++||++|.++ ..++++..+
T Consensus 110 ~-~~~~~d~~~l~~~l~~------~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g--~~~~~~~~~ 180 (363)
T TIGR02326 110 G-EVEPPDVVEVEAILAA------DPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFG--GIPIDIAEL 180 (363)
T ss_pred C-CCCCCCHHHHHHHHhh------CCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEcccccc--Ccccchhhc
Confidence 7 5678999999999872 1356789999999999999999999 9999999999999999887 345666667
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccc-ccccccccCCCCCccchhhHH
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELET-LDESSQSKFPESSISGVSSKL 414 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~-~~~~~f~e~GT~~~~~~~~~~ 414 (588)
++|++++|+||+++. |.|+|+++++++.++.+.+...+ ...+.... ...+.. ....+| |++...+ .
T Consensus 181 ~~D~~~~s~~K~l~~-p~G~G~l~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~f----t~~~~~~---~ 247 (363)
T TIGR02326 181 HIDYLISSANKCIQG-VPGFGFVIARQAELAACKGNARS--LSLDLYDQ---WRCMEDNHGKWRF----TSPTHVV---H 247 (363)
T ss_pred CccEEEecCcccccc-CCcceEEEECHHHHHHhhcCCCc--eeecHHHH---HHHHhccCCCCCC----CCcHHHH---H
Confidence 799999999996642 88999999999887766432211 00000000 000000 001133 4555554 7
Q ss_pred HHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE-EEEEeecCCCCCcCHHH
Q 037063 415 VECKGLDHADAL-GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS-LAFNVFDWNGTRIDPAL 492 (588)
Q Consensus 415 al~~aL~~l~~~-G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i-v~f~~~~~~g~~i~~~~ 492 (588)
++.++++.+... |++++.+++..+++++++.|.++ +++++.+.. .++++ ++|.+++. ..++...
T Consensus 248 al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~ 313 (363)
T TIGR02326 248 AFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL----------GFEPLLDDE--IQSPIITSFYSPED--PDYRFAD 313 (363)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc----------CCeeccCcc--cCCceEEEEECCCC--CCCCHHH
Confidence 788899887555 58999999999999999999885 344554432 34554 45665431 1145667
Q ss_pred HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 493 VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 493 v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
+.+.|.++||.+++|..+ +...||+|++.+++.||+++++++|+++|+
T Consensus 314 v~~~L~~~gi~v~~g~~~---------------------------~~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 314 FYQRLKEQGFVIYPGKVS---------------------------QVDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred HHHHHHHCCEEEECCcCC---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 778888899999887322 112899998878999999999999998764
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=275.09 Aligned_cols=348 Identities=13% Similarity=0.106 Sum_probs=248.5
Q ss_pred eecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHhC
Q 037063 114 CFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMN 193 (588)
Q Consensus 114 yLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lg 193 (588)
+|=++|.+..|+.|++++.+.+.. +.|.+.+. +. .++. ..+-.++++++|+.++++||
T Consensus 5 ~l~~pGP~~~p~~V~~a~~~~~~~--~~~~~~g~----------~~--------~~hr--~~~f~~~~~~~~~~l~~l~~ 62 (360)
T PRK05355 5 YNFSAGPAMLPEEVLEQAQQELLD--WNGSGMSV----------ME--------ISHR--SKEFEAVAEEAEADLRELLN 62 (360)
T ss_pred eeccCCCCCCCHHHHHHHHHHhhc--cccCCccc----------cc--------cCCC--CHHHHHHHHHHHHHHHHHhC
Confidence 444689999999999998765421 11211100 00 0010 01114899999999999999
Q ss_pred CCCCCceEEEe-cCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHH-
Q 037063 194 ISEDDYTLVFT-ANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMK- 270 (588)
Q Consensus 194 a~~~e~~vvft-~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~- 270 (588)
++ ++++|+|+ +++|.|+..++.++ +.+|++++ .....+ ...| .+.+++.|.. ..+..++..+..+..++++
T Consensus 63 ~~-~~~~v~~~~gsgt~~~Ea~~~nl-~~~g~~~l~i~~G~f--g~r~-~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~ 136 (360)
T PRK05355 63 IP-DNYKVLFLQGGASLQFAMVPMNL-LGGGKKADYVDTGSW--SKKA-IKEAKKYGEV-NVAASSEDDGFTYIPPLDEW 136 (360)
T ss_pred CC-CCcEEEEEcCCchHHHHHHHHhc-CCCCCeEEEEECCHH--HHHH-HHHHHHhCCc-eEEecccccCCCCCCChhhc
Confidence 84 34556666 67788999999999 88998843 333333 2334 6888999975 6666653355555556665
Q ss_pred HHhhhccccCCCcceEEEEeCCCCCCCccC-CHHHHHHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCC
Q 037063 271 KIVGKRKKKKKKKRGLFVFPLQSKVTGARY-SYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFG 349 (588)
Q Consensus 271 ~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~-pl~~I~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G 349 (588)
+|+ +++++|+++|.++.||+++ |+.+| +|++++||++|+++ ..+++++. .||+++|.||++|
T Consensus 137 ~l~--------~~~~~V~~th~eTstGv~~~~i~~i-----~g~l~vVDavss~g--~~~idv~~--~d~~~~ssqK~lg 199 (360)
T PRK05355 137 QLS--------DDAAYVHYTSNETIDGTEFHELPDT-----GDVPLVADMSSDIL--SRPIDVSK--FGLIYAGAQKNIG 199 (360)
T ss_pred cCC--------CCCCEEEEccCCCcceEecCccccc-----CCCcEEEEcCcccc--CccCCHHH--ccEEEEecccccc
Confidence 565 5789999999999999999 66555 89999999999998 56777766 4799999999998
Q ss_pred CCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHh-CH
Q 037063 350 ENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL-GL 428 (588)
Q Consensus 350 ~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~-G~ 428 (588)
|.|+|++++++++++++.+.. + ++.+.. .... ..+..||||+..+ +++.++|+++.++ |+
T Consensus 200 --P~Glg~l~~s~~~l~~~~~~~-~--~~~~~~-------~~~~----~~~~~~Tp~~~~i---~aL~~aL~~i~~~gG~ 260 (360)
T PRK05355 200 --PAGLTIVIVREDLLGRALPSI-P--SMLDYK-------THAD----NDSMYNTPPTFAI---YLAGLVFKWLKEQGGV 260 (360)
T ss_pred --CCceEEEEECHHHHhhcccCC-C--hHHHHH-------HHHh----cCCccCCCcHHHH---HHHHHHHHHHHHccCH
Confidence 899999999999998877642 2 111110 0000 1113689999886 8999999999999 89
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc-cEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccc
Q 037063 429 ILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG-PSLAFNVFDWNGTRIDPALVQKLADRHNISLSCG 507 (588)
Q Consensus 429 ~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg-~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G 507 (588)
+++.+|.+.|++++++.|+++ +.+..+.+. ..|+ .+++|++++. +....+...+.+.||.+..|
T Consensus 261 e~i~~r~~~l~~~l~~~l~~~---------~~~~~~~~~--~~rs~~v~sf~~~~~----~~~~~~~~~~~~~Gi~~~~~ 325 (360)
T PRK05355 261 AAMEKRNQEKAALLYDAIDSS---------DFYRNPVAP--EDRSRMNVPFTLADE----ELDKKFLAEAKAAGLVGLKG 325 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHhC---------CCcccCCCh--hhcCCcEEEEEcCCh----HHHHHHHHHHHHCCCcccCC
Confidence 999999999999999999996 322222221 2355 6799998762 22244545556678876444
Q ss_pred cccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 508 FLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 508 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.. ..| .||+|++.|||.|||++|+++|++++..
T Consensus 326 ~~--------------------------~~g--~vRiS~~~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 326 HR--------------------------SVG--GMRASIYNAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred CC--------------------------ccC--cEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 21 023 8999999999999999999999997754
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=269.80 Aligned_cols=314 Identities=12% Similarity=0.082 Sum_probs=227.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEe-cCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHh--cCCEEEEE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFT-ANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKK--RGARVSSA 254 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft-~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~--~G~~v~~v 254 (588)
.++++++|+.+++++|+++ +++|+|+ +|+|.+++.++.++ +.+..-+++..+|.+.. ...++. .+.++..+
T Consensus 40 ~~~~~~~r~~l~~l~~~~~-~~~v~f~~gs~T~a~~~~~~~l-~~~~~l~i~~G~~~~~~----~~~a~~~~~~~~~~~~ 113 (361)
T TIGR01366 40 KNLVGRVREGLAELFSLPD-GYEVILGNGGATAFWDAATFGL-IEKKSLHLSFGEFSSKF----AKAVKLAPWLGEPIIV 113 (361)
T ss_pred HHHHHHHHHHHHHHhCCCC-CceEEEECCchhHHHHHHHHhc-ccccccEEecCHHHHHH----HHHHHhhhccCCceEE
Confidence 6889999999999999953 4679997 56999999999998 53322245555554322 333333 12377888
Q ss_pred eccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHHHHHHHcCcEEEEeCCCcCCCCCCCCCCCC
Q 037063 255 EFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSL 334 (588)
Q Consensus 255 ~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I~~a~~~g~~vvvDaa~~~~~d~~~l~l~~ 334 (588)
+.++ ...++. .+. +++++|+++|.+|.||.++|+++| +|++|++++||++|++| ..+++++.
T Consensus 114 ~~~~-~~~~~~-----~~~--------~~~~lV~~~h~et~tG~~~pi~~I--~~~~g~~~iVDavqs~g--~~~idv~~ 175 (361)
T TIGR01366 114 TADP-GSAPEP-----QAD--------PGVDVIAWAHNETSTGVAVPVRRP--EGSDDALVVIDATSGAG--GLPVDIAE 175 (361)
T ss_pred ecCC-CCCCCC-----ccC--------CCCCEEEEcccCCccceecccccc--cccCCCeEEEEcCcccc--CCCCCHHH
Confidence 7764 222222 233 689999999999999999999988 58899999999999999 56677664
Q ss_pred CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHH
Q 037063 335 FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKL 414 (588)
Q Consensus 335 ~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~ 414 (588)
+|++++|.||++|. |.|++++++++++++++.+...++ ..+... . ++.......+ +.+|++.+++..++
T Consensus 176 --~D~~~~s~~K~lg~-~~Gl~~~~~s~~~~~~~~~~~~~~-~~~p~~---~---d~~~~~~~~~-~~~t~~tp~i~~i~ 244 (361)
T TIGR01366 176 --TDVYYFAPQKNFAS-DGGLWLAIMSPAALERIEAIAASG-RWVPEF---L---SLPTAVDNSL-KNQTYNTPAIATLA 244 (361)
T ss_pred --CCEEEEEchhhcCC-CCceEEEEECHHHHhhhhcccCCC-CCCchh---h---hHHHHHhccc-cCCCCCCchHHHHH
Confidence 89999999999995 778999999999998888766542 211100 0 0100000123 45667766665568
Q ss_pred HHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc---cEEEEEeecCCCCCcCH
Q 037063 415 VECKGLDHADAL-GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG---PSLAFNVFDWNGTRIDP 490 (588)
Q Consensus 415 al~~aL~~l~~~-G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg---~iv~f~~~~~~g~~i~~ 490 (588)
++.++++++.++ |++.+.+|.+.+++++++.|.++ +.++++.+.. ..++ ++++|. . | +++
T Consensus 245 ~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~---------~~~~~~~~~~-~~~s~~v~~v~~~-~---g--~~~ 308 (361)
T TIGR01366 245 LLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQER---------PYATPFVTDP-GKRSQVVGTIDFV-D---D--IDA 308 (361)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhC---------CCcccCCCCh-hhcccceEEEECC-C---c--cCH
Confidence 999999999999 69999999999999999999985 4456554321 1123 344442 2 2 678
Q ss_pred HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 491 ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 491 ~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
..+...|+++||.+..|... .+...||||++.|+|.+||++|+++|++.+++
T Consensus 309 ~~v~~~L~~~gI~i~~~~~~--------------------------l~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 309 ATVAKILRANGIVDTEPYRK--------------------------LGRNQLRVAMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred HHHHHHHHHCCCeeccCccc--------------------------cCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence 88888888889998654210 12228999999999999999999999997654
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-29 Score=265.16 Aligned_cols=355 Identities=11% Similarity=0.000 Sum_probs=250.6
Q ss_pred CeeeecCCC--------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 111 NYVCFDYIG--------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 111 ~~vyLD~a~--------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+|||+++ +++..+.+.+.+...+.. .++||+|. +.. .++++
T Consensus 33 ~~iyld~~a~~~~~~~~tt~~~p~~~~~~~~~l~~-~~~np~s~---------------------------~~~-~~le~ 83 (431)
T TIGR01788 33 DELSLDGNPRLNLATFVTTWMEPEARKLMDETINK-NMIDKDEY---------------------------PQT-AEIEN 83 (431)
T ss_pred HHhhhcCCcceeeeeeeCCCCCHHHHHHHHHHHhc-CCCCcccC---------------------------ccH-HHHHH
Confidence 356777777 777777788877666532 35666321 222 48999
Q ss_pred HHHHHHHHHhCCC-C-CCceEEE--ecCHHHHHHHHHHhCCC-------CCC-----CeEE-EcCCCchhHHHHHHHHHH
Q 037063 183 KIRKRIMDFMNIS-E-DDYTLVF--TANQSSAFKLLAESYPF-------YSN-----PRLL-TVYDHENEAAALMIESSK 245 (588)
Q Consensus 183 ~~r~~ia~~lga~-~-~e~~vvf--t~g~T~al~lv~~s~~~-------~~g-----d~ll-~~~e~~s~~~~~~~~~a~ 245 (588)
++|+.+++++|++ + ++ ++| |+|+|+|+++++.+... +.| .+|+ +..+|++ | .+.++
T Consensus 84 ~~~~~la~llg~~~~~~~--~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~s----v-~ka~~ 156 (431)
T TIGR01788 84 RCVNMLADLWHAPAKDAE--AVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVC----W-EKFAR 156 (431)
T ss_pred HHHHHHHHHhCCCCCCCC--CeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHH----H-HHHHH
Confidence 9999999999997 3 34 555 89999999987755421 111 2444 5666764 2 45667
Q ss_pred hcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHc------CcEEEEe
Q 037063 246 KRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEK------GWHVLLD 318 (588)
Q Consensus 246 ~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~------g~~vvvD 318 (588)
..|++++.+|++...+.+|+++|+++|+ ++|.+|++++++|.||.+.|+++| ++|+++ |++++||
T Consensus 157 ~lg~~v~~i~~d~~~~~vd~~~L~~~i~--------~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvD 228 (431)
T TIGR01788 157 YFDVELREVPMDPGRYVIDPEQVVEAVD--------ENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVD 228 (431)
T ss_pred HcCceeEEEecCCCceeeCHHHHHHHHh--------hCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEe
Confidence 7899999999983235899999999998 679999999999999999999999 999999 9999999
Q ss_pred CCCcCC---CCC--CCCCCCCCCCcEEEeccCccC-CCCCCceEEEEEeCcc--hhccc--CCCCCCCceEeeecCCCcc
Q 037063 319 ATALGS---KDM--DTLGLSLFKPDFLICSFYKIF-GENPSGFGCLFVKKSS--ASVLS--GSTSSVSTIMGIEPSFSEI 388 (588)
Q Consensus 319 aa~~~~---~d~--~~l~l~~~~~D~vv~S~~K~~-G~~P~G~G~L~v~~~~--~~~l~--~~~~g~~g~v~~~~~~~~~ 388 (588)
++|.++ .+. .++++...++|.+++|+|||+ | |.|+|+|++|++. .+.+. +.+.++ +..+.
T Consensus 229 aaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~--P~g~G~l~~r~~~~l~~~~~~~~~yl~~-~~~~~------- 298 (431)
T TIGR01788 229 AASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLV--YPGVGWVIWRDEEALPEELIFHVNYLGG-DEPTF------- 298 (431)
T ss_pred cccHHHHHHHhCCCchhhcCCCCceEEEECchhccCC--CCCcEEEEEeChHHcchhheecccccCC-CCCCc-------
Confidence 998842 111 234445567999999999976 6 9999999999862 12221 112221 11000
Q ss_pred cccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCC
Q 037063 389 IELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKV 468 (588)
Q Consensus 389 ~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~ 468 (588)
. -.|+.+.... .++...|..+-..|++++.++...|++++.++|.++ +.+++++|.
T Consensus 299 -t----------~~~sR~g~~a---l~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~---------~~~el~~~~- 354 (431)
T TIGR01788 299 -T----------LNFSRPANQV---IAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKL---------GPFEIISDG- 354 (431)
T ss_pred -c----------eecCchHHHH---HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhC---------CCEEEeeCC-
Confidence 0 0111111111 233455666666789999999999999999999984 679999762
Q ss_pred CCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCC
Q 037063 469 MFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGC 548 (588)
Q Consensus 469 ~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~ 548 (588)
.+.++|+|++.+.+...++..++.+.|.+.||.+..- .+ | . ...|..++|+++-.
T Consensus 355 --~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~-~~-p---------------~------~~~~~~~lR~~~~~ 409 (431)
T TIGR01788 355 --SGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAY-TL-P---------------K------NAEDIVVMRIVVRE 409 (431)
T ss_pred --CCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCC-CC-C---------------C------ccCCeEEEEEEecC
Confidence 3679999999753323356778888888999865321 00 0 0 01344589999988
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 037063 549 LTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 549 ~~t~eDv~~li~~l~~~l~~ 568 (588)
..+.+.+++|++.|...+..
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~ 429 (431)
T TIGR01788 410 GFSRDLAELLIEDIEAALAY 429 (431)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999987654
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=261.31 Aligned_cols=323 Identities=13% Similarity=0.057 Sum_probs=238.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.+.++++|+.+++++|++++...|++|+|+|+++.+++.++ +.+|++++ ....++. ..+ ...++..|++++.++.
T Consensus 36 ~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l-~~~~~~vlv~~~~~~~--~~~-~~~~~~~g~~~~~i~~ 111 (368)
T PRK13479 36 NALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSL-VPRDGKVLVPDNGAYG--ARI-AQIAEYLGIAHVVLDT 111 (368)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhc-cCCCCeEEEEeCCchH--HHH-HHHHHHcCCcEEEEEC
Confidence 35789999999999999765456889999999999999999 67888854 4433332 122 4677889999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ .++.+++++++++++. .+++++|.+++++|+||.+.|+++| ++|+++|+++++|+++.++ ..++++..+
T Consensus 112 ~-~~~~~d~~~l~~~l~~------~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g--~~~~~~~~~ 182 (368)
T PRK13479 112 G-EDEPPDAAEVEAALAA------DPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFG--AIPIDIAEL 182 (368)
T ss_pred C-CCCCCCHHHHHHHHHh------CCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccC--Ccccccccc
Confidence 7 4567999999999872 1457899999999999999999999 9999999999999998776 345666666
Q ss_pred CCcEEEeccCccC-CCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc-cccccccCCCCCccchhhH
Q 037063 336 KPDFLICSFYKIF-GENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL-DESSQSKFPESSISGVSSK 413 (588)
Q Consensus 336 ~~D~vv~S~~K~~-G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~-~~~~f~e~GT~~~~~~~~~ 413 (588)
++|++++|+||++ | |.|+|+++++++.++.+...... ...+... ......+ ...+| |++...+
T Consensus 183 ~~d~~v~s~~K~l~g--~~G~G~l~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~----t~~~~~~--- 247 (368)
T PRK13479 183 GIDALISSANKCIEG--VPGFGFVIARRSELEACKGNSRS--LSLDLYD----QWAYMEKTGQWRF----TPPTHVV--- 247 (368)
T ss_pred CceEEEecCcccccc--CCCceEEEECHHHHHHhhcCCCC--eeecHHH----HHhhhcccCCCCC----CCcHHHH---
Confidence 7999999999965 6 88999999999988776643321 1111000 0000000 01123 6666554
Q ss_pred HHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHH
Q 037063 414 LVECKGLDHADAL-GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPAL 492 (588)
Q Consensus 414 ~al~~aL~~l~~~-G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~ 492 (588)
+++.++++.+.+. +++++.+++..+++++++.|.++ +++++.+.. .....+++|.+.... .++...
T Consensus 248 ~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~ 314 (368)
T PRK13479 248 AAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL----------GFEPLLDAE-IQSPIIVTFHAPADP--AYDFKE 314 (368)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc----------CCcccCCch-hcCceEEEEECCCCC--CcCHHH
Confidence 7888999987555 58899999999999999999885 344554322 112245667655421 145677
Q ss_pred HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 493 VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 493 v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+.+.|.++||.++.|... ....+|+|.+.+++.||+++++++|++++++
T Consensus 315 l~~~L~~~gi~v~~g~~~---------------------------~~~~iRis~~~~~t~edi~~~l~~L~~~l~~ 363 (368)
T PRK13479 315 FYERLKEQGFVIYPGKLT---------------------------QVDTFRIGCIGDVDAADIRRLVAAIAEALYW 363 (368)
T ss_pred HHHHHHHCCEEEecCCCC---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 888888889999876321 0127999987789999999999999998865
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=268.03 Aligned_cols=347 Identities=12% Similarity=0.041 Sum_probs=245.3
Q ss_pred CCCCCCCHHHHHHhhhhcccCc-CCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH-HHHHHHHHHhCCC
Q 037063 118 IGHGLFSYSQMHSCSSNVHSSA-ASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES-KIRKRIMDFMNIS 195 (588)
Q Consensus 118 a~~gl~~~~~~~~~~~~~~~~~-~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~-~~r~~ia~~lga~ 195 (588)
++-..+|+.+++.+...+.... .+||+| ....|.+..+.++ .+|++++++||++
T Consensus 41 ~sen~~s~~v~~~~~~~l~~~y~~g~p~s------------------------~~~~g~~~~~~iE~~ar~~~a~lf~a~ 96 (452)
T PTZ00094 41 ASENFTSRAVLECLGSCFTNKYAEGLPGN------------------------RYYGGNEVVDKIENLCQKRALEAFGLD 96 (452)
T ss_pred cccccCCHHHHHHhcchhhccccCCCCCc------------------------cccccchHHHHHHHHHHHHHHHHhCCC
Confidence 7788999999999876664322 266632 1122333345555 5999999999998
Q ss_pred CCCceEEEe---cCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHH------hcCCEEEEEeccCCCCccCH
Q 037063 196 EDDYTLVFT---ANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSK------KRGARVSSAEFAWPNLRIHS 265 (588)
Q Consensus 196 ~~e~~vvft---~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~------~~G~~v~~v~~~~~~~~i~~ 265 (588)
+++ ++|+ +++|+|+.+++.++ +++||+|+ +..+|.+....| ....+ ..+.++..++++ .++.+|.
T Consensus 97 ~~~--~~~~~~~~sgt~an~~v~~al-~~~gd~Ii~~~~ehg~~l~~~-~~l~~~~~~~~~~~~~~~~~~~~-~~g~id~ 171 (452)
T PTZ00094 97 PEE--WGVNVQPYSGSPANFAVYTAL-LQPHDRIMGLDLPSGGHLTHG-FYTAKKKVSATSIYFESLPYQVN-EKGLIDY 171 (452)
T ss_pred ccc--ceeecCCCchHHHHHHHHHHh-cCCCCEEEecccccCCccccc-ccccccccccceeeeeeeecccC-CCCCcCH
Confidence 765 7777 78999999999999 89999966 567776533323 11111 112344455566 4689999
Q ss_pred HHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC---CCCCCCCCCCCCcEEE
Q 037063 266 GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK---DMDTLGLSLFKPDFLI 341 (588)
Q Consensus 266 e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~---d~~~l~l~~~~~D~vv 341 (588)
++|++++.. .++++|++. . +.+|...|+++| ++|+++|++++||++|.+|. ++.+.++ .++|+++
T Consensus 172 ~~L~~~l~~-------~~~~lvi~~-~-s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~--~~~D~l~ 240 (452)
T PTZ00094 172 DKLEELAKA-------FRPKLIIAG-A-SAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPF--PYADVVT 240 (452)
T ss_pred HHHHHHHHH-------hCCCEEEEe-C-CCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCC--CCCcEEE
Confidence 999999962 356777764 3 459999999999 99999999999999999972 2222222 2599999
Q ss_pred eccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHH
Q 037063 342 CSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLD 421 (588)
Q Consensus 342 ~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~ 421 (588)
+|+||+++. |.| |+++++++..+.+.+.... . .+ +.| .|+++...+ +++.++++
T Consensus 241 ~S~hK~l~G-P~G-g~l~~~~~~~~~l~~~~~~---~-----------~~-----p~~--~G~~~~~~i---aal~~al~ 294 (452)
T PTZ00094 241 TTTHKSLRG-PRS-GLIFYRKKVKPDIENKINE---A-----------VF-----PGL--QGGPHNHQI---AAIAVQLK 294 (452)
T ss_pred cCCccCCCC-CCc-eEEEEecccchHHHHhhcc---c-----------cC-----CCC--CCCchHHHH---HHHHHHHH
Confidence 999996642 888 8888888765444322110 0 00 022 366666665 88899999
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCC
Q 037063 422 HADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHN 501 (588)
Q Consensus 422 ~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~g 501 (588)
++...+.+.+.+++..++++|.+.|.+. +++++++... .+..++.|...+ ++...+..+|+++|
T Consensus 295 ~~~~~~~~~~~~~i~~l~~~l~~~L~~~----------g~~v~~~~~~-~~~~~v~~~~~~-----~~~~~~~~~L~~~g 358 (452)
T PTZ00094 295 EVQSPEWKEYAKQVLKNAKALAAALEKR----------GYDLVTGGTD-NHLVLVDLRPFG-----ITGSKMEKLLDAVN 358 (452)
T ss_pred HHhChhHHHHHHHHHHHHHHHHHHHHhC----------CcEEecCCCC-CceEeecCCcCC-----CCHHHHHHHHHHCC
Confidence 9987788999999999999999999873 4566654321 233455555444 56788899999999
Q ss_pred cEe-ccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCC----HHHHHHHHHHHHHhhhh
Q 037063 502 ISL-SCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTN----FEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 502 I~v-~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t----~eDv~~li~~l~~~l~~ 568 (588)
|.+ +.|..|.+. ....+.||+|++++|| ++||++++++|++.++.
T Consensus 359 I~vs~~~~p~~~~----------------------~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 359 ISVNKNTIPGDKS----------------------ALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred cEEecccCCCCCc----------------------CCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999 556555310 0111389999999998 99999999999999885
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-28 Score=256.21 Aligned_cols=343 Identities=14% Similarity=0.099 Sum_probs=251.2
Q ss_pred CCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHH
Q 037063 107 LSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRK 186 (588)
Q Consensus 107 l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~ 186 (588)
++.....|+-|....-++.+.++.+...... ..+||.|.+ .+|....++++++++
T Consensus 18 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~-n~gnp~~~~------------------------~~g~~~~~~e~~~~~ 72 (380)
T PRK02769 18 LRHNQYFNVGYPEAADFDYSALKRFFSFSIN-NCGDPYSKS------------------------NYPLNSFDFERDVMN 72 (380)
T ss_pred HHHhhhcccCCCchhhcCHHHHHHHHHhhhc-cCCCccccC------------------------CCCCChHHHHHHHHH
Confidence 4334556777777887877788877666544 357774321 123344789999999
Q ss_pred HHHHHhCCCCCCceEEEecCHHHHHHHHHHhC-CCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccC
Q 037063 187 RIMDFMNISEDDYTLVFTANQSSAFKLLAESY-PFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIH 264 (588)
Q Consensus 187 ~ia~~lga~~~e~~vvft~g~T~al~lv~~s~-~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~ 264 (588)
.+++++|+++++...+||+|+|+++.+.+... .+.++++|+ +..+|+| + .+.++..|.+++.|+.+ +++++|
T Consensus 73 ~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~S--v---~ka~~~lg~~~~~V~~~-~~g~id 146 (380)
T PRK02769 73 FFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYS--V---SKIARLLRIKSRVITSL-PNGEID 146 (380)
T ss_pred HHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceeh--H---HHHHHHcCCCCceeccC-CCCcCc
Confidence 99999999866534699999999966554332 245677855 6678886 2 24456678888888887 789999
Q ss_pred HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcC---cEEEEeCCCcCCCC-----CCCCCCCCC
Q 037063 265 SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKG---WHVLLDATALGSKD-----MDTLGLSLF 335 (588)
Q Consensus 265 ~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g---~~vvvDaa~~~~~d-----~~~l~l~~~ 335 (588)
.++|+++|+. . ..+|.+|++++.+|++|.+.|+++| ++|+++| ++++||||+.++.- ..++++..
T Consensus 147 ~~~L~~~i~~----~-~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~- 220 (380)
T PRK02769 147 YDDLISKIKE----N-KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFAD- 220 (380)
T ss_pred HHHHHHHHHh----C-CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccC-
Confidence 9999999982 1 2459999999999999999999999 9999998 69999999888521 11456555
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHH
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLV 415 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~a 415 (588)
++|++++|+|||+|. |.|+|+|++|++..+.+.+.. ..+. .. . .. ..||.+...+ ++
T Consensus 221 ~vDsis~s~HK~~~~-P~g~G~l~~r~~~~~~~~~~~----~yl~------------~~-d-~t-~~GSR~g~~~---l~ 277 (380)
T PRK02769 221 GIDSIAISGHKFIGS-PMPCGIVLAKKKYVERISVDV----DYIG------------SR-D-QT-ISGSRNGHTA---LL 277 (380)
T ss_pred CCCEEEECCcccCCC-CCCcEEEEEehhhhhhcccCc----cccC------------CC-C-CC-ccCCCCcHHH---HH
Confidence 799999999998886 999999999998766554311 1100 00 0 11 4788887765 68
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHH
Q 037063 416 ECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQK 495 (588)
Q Consensus 416 l~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~ 495 (588)
+..+|+++...|++++.+++.++++++.++|+++ +++++.. +...+|+|..++ .. +
T Consensus 278 lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~----------g~~~~~~----p~~~~v~f~~~~-------~~-~-- 333 (380)
T PRK02769 278 LWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN----------GIPAWRN----PNSITVVFPCPS-------ER-I-- 333 (380)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC----------CCEEEcC----CCceEEEEcCCC-------HH-H--
Confidence 8899999999999999999999999999999874 4555553 346788886543 11 1
Q ss_pred HHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 496 LADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 496 ~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
. +|..+.+- .+ .+|+.+-...+.|.|+.|++.|...+.
T Consensus 334 -~--~~w~l~~~-----------------------------~~--~~hi~~~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 334 -W--KKWHLATS-----------------------------GN--QAHIITMPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred -H--hCeeEccc-----------------------------CC--EEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 1 45554321 11 788888888899999999999877543
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=250.35 Aligned_cols=322 Identities=14% Similarity=0.120 Sum_probs=235.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCe-EEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPR-LLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~-ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++++++|+.+++++|+++++..|++++|+|+++.+++.++ +.++++ |+....++... +...++..|++++.++.
T Consensus 30 ~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~-~~~~~~vi~~~~~~~~~~---~~~~a~~~g~~~~~i~~ 105 (355)
T TIGR03301 30 NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSL-VPRDGKLLVLINGAYGER---LAKICEYLGIPHTDLNF 105 (355)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhc-cCCCCeEEEECCCchhhH---HHHHHHHcCCceEEEec
Confidence 47789999999999999865446889999999999999998 677777 44544443311 24566788999999998
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ .++.++.+++++.+++ +++++++++++++|+||.+.|+++| ++|+++|+++++|+++..+ ..++++..+
T Consensus 106 ~-~~~~~d~~~l~~~l~~------~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g--~~~~~~~~~ 176 (355)
T TIGR03301 106 S-EYEPPDLNRIEEALAA------DPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFG--AIPIDIEEL 176 (355)
T ss_pred C-CCCCCCHHHHHHHHHh------CCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccC--Ccccchhhc
Confidence 7 4567999999999972 1457789999999999999999999 9999999999999998776 234555566
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHH
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLV 415 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~a 415 (588)
++|++++|+||+++. |.|+|++++++++++.+...... ...+... +...+... .. ..+|++...+ .+
T Consensus 177 ~~d~~~~s~~K~l~~-~~G~g~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~---~~-~~~t~~~~~~---~a 243 (355)
T TIGR03301 177 DVDALIASANKCLEG-VPGFGFVIARRDLLEASAGNARS--LYLDLYD---QWAYMEKT---GK-WRFTPPTHTV---YA 243 (355)
T ss_pred CccEEEecCCccccc-CCceeEEEECHHHHHHhhCCCCC--ceeeHHH---HHHHhhhc---CC-CCCCCcHHHH---HH
Confidence 799999999997642 78999999999988776532111 0000000 00000000 00 2335665554 67
Q ss_pred HHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc-EEEEEeecCCCCCcCHHHH
Q 037063 416 ECKGLDHADALG-LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP-SLAFNVFDWNGTRIDPALV 493 (588)
Q Consensus 416 l~~aL~~l~~~G-~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~-iv~f~~~~~~g~~i~~~~v 493 (588)
+..+++.+.+.| ++++.++.+.+++++.+.|.++ +++++.+.. .+++ ++.|.++... ..+...+
T Consensus 244 ~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~----------g~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~ 309 (355)
T TIGR03301 244 FAQALEELEAEGGVPARIARYRRNRELLVDGLRAL----------GFQPLLPER--WQSPIIVSFLYPDDP--DFDFDDF 309 (355)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc----------CCeeecCCC--CCCCcEEEEECCCCC--cchHHHH
Confidence 788999887776 8999999999999999999875 345555432 2344 4566665311 1345678
Q ss_pred HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 494 QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 494 ~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
.+.|.++||.++.|... . .++||+|++.+++.+|++++++.|+++|
T Consensus 310 ~~~l~~~gi~i~~~~~~--------------------------~-~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 310 YQELKERGFVIYPGKLT--------------------------L-ADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred HHHHHHCCEEEECCccc--------------------------c-ccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 88888899999876321 0 1389999999999999999999998754
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=249.66 Aligned_cols=299 Identities=14% Similarity=0.047 Sum_probs=224.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhC---CCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY---PFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSS 253 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~---~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~ 253 (588)
.++++++++.+++++|++++. ++||+|+|+++.+++.++ .++++++|++ ..+|++ | .+.++..|++++.
T Consensus 58 ~~~~~~~~~~la~~~g~~~~~--~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s----~-~~~~~~~g~~~~~ 130 (371)
T PRK13520 58 AKLEEEAVEMLGELLHLPDAY--GYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFS----F-DKAADMLGVELRR 130 (371)
T ss_pred HHHHHHHHHHHHHHhCCCCCC--eEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHH----H-HHHHHHcCceEEE
Confidence 566789999999999997543 899999999988876654 2345778664 455543 2 4566778999999
Q ss_pred EeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC---CC--
Q 037063 254 AEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK---DM-- 327 (588)
Q Consensus 254 v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~---d~-- 327 (588)
++.+ .++.+++++|+++|+ +++++|++.+.+|+||.+.|+++| ++|+++|++++||+++.... ..
T Consensus 131 v~~~-~~~~~d~~~l~~~i~--------~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~ 201 (371)
T PRK13520 131 APLD-DDYRVDVKAVEDLID--------DNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDP 201 (371)
T ss_pred ecCC-CCCcCCHHHHHHHHh--------hCCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCC
Confidence 9987 567899999999998 568888888889999999999999 99999999999999986431 11
Q ss_pred CCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCc-chhcccC---CCCCCCceEeeecCCCcccccccccccccccCC
Q 037063 328 DTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKS-SASVLSG---STSSVSTIMGIEPSFSEIIELETLDESSQSKFP 403 (588)
Q Consensus 328 ~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~-~~~~l~~---~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G 403 (588)
..+++...++|++++|+||+.+. |.|+|+++++++ .++.+.. ...++ + .+...|
T Consensus 202 ~~~~~~~~~vd~~~~s~~K~~~a-~~~~G~~~~~~~~~~~~l~~~~~~~~~~-~--------------------~~~~~g 259 (371)
T PRK13520 202 PNFDFSLPGVDSITIDPHKMGLA-PIPAGGILFRDESYLDALAVDTPYLTSK-K--------------------QATLTG 259 (371)
T ss_pred CCccccCCCCceEEECCccccCc-cCCceEEEEcCHHHHHhhcccCccccCC-C--------------------CcceEe
Confidence 12444445699999999997653 778898887664 5554431 11110 0 121456
Q ss_pred CCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecC
Q 037063 404 ESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDW 483 (588)
Q Consensus 404 T~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~ 483 (588)
|++...+ +++..+|+.+...|++++.++..++++++.+.|.++ +++++.+ ...++++|.+.+
T Consensus 260 t~~~~~~---~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~----~~~~~v~~~~~~- 321 (371)
T PRK13520 260 TRSGAGV---AATYAVMKYLGREGYRKVVERCMENTRWLAEELKER----------GFEPVIE----PVLNIVAFDDPN- 321 (371)
T ss_pred eccChHH---HHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC----------CCEEecC----CCceEEEEecCC-
Confidence 7766654 677789988877788999999999999999999884 3443222 235678777653
Q ss_pred CCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 484 NGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 484 ~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
...+.+.|.++||.++.+ .+..+||+|++.++|.|||+++++.|+
T Consensus 322 ------~~~v~~~L~~~gi~v~~~-----------------------------~~~~~iRis~~~~~t~edi~~~~~~l~ 366 (371)
T PRK13520 322 ------PDEVREKLRERGWRVSVT-----------------------------RCPEALRIVCMPHVTREHIENFLEDLK 366 (371)
T ss_pred ------HHHHHHHHHHCCceeccC-----------------------------CCCCEEEEEEECCCCHHHHHHHHHHHH
Confidence 667788888889988752 111289999999999999999999999
Q ss_pred Hhhh
Q 037063 564 RFLD 567 (588)
Q Consensus 564 ~~l~ 567 (588)
++++
T Consensus 367 ~~~~ 370 (371)
T PRK13520 367 EVKK 370 (371)
T ss_pred HHhh
Confidence 8764
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-27 Score=241.86 Aligned_cols=327 Identities=15% Similarity=0.146 Sum_probs=252.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.+++.++++.+..+|+++ +.+.+++++++|.|+...+.++ ++|||+|| .....+. .++.+++++.|++++.+..
T Consensus 37 ~~~~~~~~~~L~~v~~t~-~~~~~ll~gsGt~amEAav~sl-~~pgdkVLv~~nG~FG---~R~~~ia~~~g~~v~~~~~ 111 (383)
T COG0075 37 VGIMKEVLEKLRKVFGTE-NGDVVLLSGSGTLAMEAAVASL-VEPGDKVLVVVNGKFG---ERFAEIAERYGAEVVVLEV 111 (383)
T ss_pred HHHHHHHHHHHHHHhcCC-CCcEEEEcCCcHHHHHHHHHhc-cCCCCeEEEEeCChHH---HHHHHHHHHhCCceEEEeC
Confidence 578889999999999997 3356888899999999999999 99999955 5555543 3448999999999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+|. ..+++++++++|++ .+..++|++.|+.+.||++.|+++| ++|+++|.++|||+.++++ ..++++++|
T Consensus 112 ~wg-~~v~p~~v~~~L~~------~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~G--g~~~~vd~w 182 (383)
T COG0075 112 EWG-EAVDPEEVEEALDK------DPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLG--GEPLKVDEW 182 (383)
T ss_pred CCC-CCCCHHHHHHHHhc------CCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCC--Ccccchhhc
Confidence 864 46999999999982 2678999999999999999999999 9999999999999999988 577888888
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHH
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLV 415 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~a 415 (588)
++|+++++.+|.++. |.|+|++.++++.++.+......+ ...++... ..++..... ...|+++..+ .+
T Consensus 183 giDv~itgSQK~l~~-PPGla~v~~S~~a~e~~~~~~~~~-~ylDL~~~---~~~~~~~~~----~p~Tppv~~i---~a 250 (383)
T COG0075 183 GIDVAITGSQKALGA-PPGLAFVAVSERALEAIEERKHPS-FYLDLKKW---LKYMEKKGS----TPYTPPVNLI---YA 250 (383)
T ss_pred CccEEEecCchhccC-CCccceeEECHHHHHHHhcCCCCc-eeecHHHH---HHHHhhcCC----CCCCCCHHHH---HH
Confidence 899999999998886 899999999999988776433211 12111100 000100000 2346766665 89
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc-EEEEEeecCCCCCcCHH-HH
Q 037063 416 ECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP-SLAFNVFDWNGTRIDPA-LV 493 (588)
Q Consensus 416 l~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~-iv~f~~~~~~g~~i~~~-~v 493 (588)
+..+|+.+.+.|++++.+|.+.+++++++++..| +++++.. . ..+++ +.++.++. | ++.. ..
T Consensus 251 L~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al----------Gl~~~~~-~-~~~s~tvta~~~P~--g--~~~~~~~ 314 (383)
T COG0075 251 LREALDLILEEGLEARIARHRRLAEALRAGLEAL----------GLELFAD-P-ERRSPTVTAIKVPE--G--VDDKKVR 314 (383)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc----------CCccccC-c-ccCCCceEEEECCC--C--CCcHHHH
Confidence 9999999999999999999999999999999997 4566662 2 24454 55566554 2 4433 33
Q ss_pred HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhhhcc
Q 037063 494 QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDADFVE 572 (588)
Q Consensus 494 ~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~~~~ 572 (588)
..+++++||.+..|.-- ..-..+||+.--+-+.+||...+.+|...|.+.-++
T Consensus 315 ~~~~~~~g~~i~gg~~~--------------------------l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g~~ 367 (383)
T COG0075 315 RALLKEYGVEIAGGQGP--------------------------LKGKIFRIGHMGNVRPEDVLAALAALEAALRELGVK 367 (383)
T ss_pred HHHHHhCCEEecccccc--------------------------cCccEEEEecCccCCHHHHHHHHHHHHHHHHHcCCc
Confidence 45778889999877211 111289999855889999999999999988776443
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-25 Score=239.25 Aligned_cols=297 Identities=13% Similarity=0.046 Sum_probs=217.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-----CCCCCeEEEcC-CCchhHHHHHHHHHHhcCCEE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-----FYSNPRLLTVY-DHENEAAALMIESSKKRGARV 251 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-----~~~gd~ll~~~-e~~s~~~~~~~~~a~~~G~~v 251 (588)
.++++++|+.+++++|+++++ +++++|+|+++.+++.++. -++|++|++.. +|++ + ...++..|+++
T Consensus 58 ~~~~~~~~~~la~~~g~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~----~-~~~~~~~G~~~ 130 (373)
T TIGR03812 58 KKIEEEVVGSLGNLLHLPDAY--GYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFS----F-EKAAEMLGLEL 130 (373)
T ss_pred HHHHHHHHHHHHHHhCCCCCC--eEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHH----H-HHHHHHcCCeE
Confidence 567789999999999997554 8889999999887765541 14678877554 4432 2 45667889999
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC-----
Q 037063 252 SSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK----- 325 (588)
Q Consensus 252 ~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~----- 325 (588)
+.++.+ +++.+++++|+++++ +++..+++.+++|+||.+.|+++| ++|+++|++++||+++....
T Consensus 131 ~~v~~~-~~~~~d~~~l~~~l~--------~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~ 201 (373)
T TIGR03812 131 RYAPLD-EDYTVDVKDVEDLID--------DNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLK 201 (373)
T ss_pred EEEeeC-CCCCcCHHHHHHHHh--------hCcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHh
Confidence 999997 678899999999997 455444444578999999999999 99999999999999976431
Q ss_pred ---CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEE-eCcchhcccCC--CCCCCceEeeecCCCccccccccccccc
Q 037063 326 ---DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFV-KKSSASVLSGS--TSSVSTIMGIEPSFSEIIELETLDESSQ 399 (588)
Q Consensus 326 ---d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v-~~~~~~~l~~~--~~g~~g~v~~~~~~~~~~~~~~~~~~~f 399 (588)
....+++....+|++++|+||+.. +|.|+|++++ +++.++.+... +... + ..+
T Consensus 202 ~~~~~~~~d~~~~~~d~~~~s~~K~~~-~~~~~G~~~~~~~~~~~~l~~~~~~~~~-~-------------------~~~ 260 (373)
T TIGR03812 202 KGYNPPPFDFSLPGVQSITIDPHKMGL-SPIPAGGILFRSKSYLKYLSVDAPYLTV-K-------------------KQA 260 (373)
T ss_pred cCCCCCCccccCCCCCEEEECccccCC-CcCCceEEEEeCHHHHhhhcccCcccCC-C-------------------CCc
Confidence 011344444458999999999543 2777776665 55565555311 1000 0 012
Q ss_pred ccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEE
Q 037063 400 SKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFN 479 (588)
Q Consensus 400 ~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~ 479 (588)
...||++...+ +++..+|+.+.+.|++++.+|+.+++++++++|+++ +...++. ...+++.|.
T Consensus 261 ~~~gt~~~~~~---~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~---------g~~~~~~-----~~~~~v~~~ 323 (373)
T TIGR03812 261 TITGTRSGASA---AATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI---------GFEPVIE-----PVLNIVAFE 323 (373)
T ss_pred ceEeechhHHH---HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC---------CCeEEcC-----CCceEEEEE
Confidence 14578877765 677789998888889999999999999999999986 2223333 235788887
Q ss_pred eecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHH
Q 037063 480 VFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLW 559 (588)
Q Consensus 480 ~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li 559 (588)
+.+ ...+.+.|.++||.++.+ .+..+||+|++.++|.+|+++++
T Consensus 324 ~~~-------~~~v~~~L~~~gi~v~~~-----------------------------~~~~~iRis~~~~~t~edid~l~ 367 (373)
T TIGR03812 324 VDD-------PEEVRKKLRDRGWYVSVT-----------------------------RCPKALRIVVMPHVTREHIEEFL 367 (373)
T ss_pred eCC-------HHHHHHHHHHCCceeccC-----------------------------CCCCEEEEEEECCCCHHHHHHHH
Confidence 654 346777777789998643 11128999999999999999999
Q ss_pred HHHHH
Q 037063 560 AFVSR 564 (588)
Q Consensus 560 ~~l~~ 564 (588)
+.|++
T Consensus 368 ~~L~~ 372 (373)
T TIGR03812 368 EDLKE 372 (373)
T ss_pred HHHhh
Confidence 99875
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-25 Score=235.31 Aligned_cols=351 Identities=11% Similarity=0.071 Sum_probs=238.0
Q ss_pred eeecC-CCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHH
Q 037063 113 VCFDY-IGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDF 191 (588)
Q Consensus 113 vyLD~-a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~ 191 (588)
+.||- .-.|++++.+++++.++.. .++||+|. + +. . +......++++|+.+|++
T Consensus 21 ~~~~~~~~~~p~~~~~~~a~~~~~~--~~~~~~~~-~-------------------~~-~--~~~~~~~~~~l~~~lA~~ 75 (387)
T PRK09331 21 INLDPIQRGGILTPEARKALIEYGD--GYSVCDYC-P-------------------GR-L--DQIKKPPIADFHEDLAEF 75 (387)
T ss_pred cccChhhcCCCCCHHHHHHHHHHHh--ccCCCccc-c-------------------cc-c--ccccChHHHHHHHHHHHH
Confidence 34443 3568999999999977762 34565220 0 10 0 111245689999999999
Q ss_pred hCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEec--cCCCCccCHHHH
Q 037063 192 MNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEF--AWPNLRIHSGKL 268 (588)
Q Consensus 192 lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~--~~~~~~i~~e~l 268 (588)
+|++ + ++||+|+|+|+.+++.++ +++||+|++. .+|.+ .+ ..++..|++++.++. + +++.++++++
T Consensus 76 ~g~~--~--~~~~~g~t~a~~~al~~l-~~~gd~Vlv~~~~h~s-~~----~~~~~~G~~~~~v~~~~~-~~~~~d~~~l 144 (387)
T PRK09331 76 LGMD--E--ARVTHGAREGKFAVMHSL-CKKGDYVVLDGLAHYT-SY----VAAERAGLNVREVPKTGY-PEYKITPEAY 144 (387)
T ss_pred hCCC--c--EEEeCCHHHHHHHHHHHh-cCCCCEEEECCCchHH-HH----HHHHHcCCEEEEEeCccC-cCCCcCHHHH
Confidence 9994 2 789999999999999999 8999997654 45554 22 235678999999998 4 5677999999
Q ss_pred HHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCcc
Q 037063 269 MKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKI 347 (588)
Q Consensus 269 ~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~ 347 (588)
++.|+.. .+...+++++|++++++|++|.+.|+++| ++|+++|+++++|+++..+ ..+++...+++|++++|+||+
T Consensus 145 ~~~l~~~-~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g--~~~~~~~~~g~D~~~~s~~K~ 221 (387)
T PRK09331 145 AEKIEEV-KEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVG--RMPVDGKKLGADFIVGSGHKS 221 (387)
T ss_pred HHHHHHh-hhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccC--CcCCCHHHcCCCEEEeeCccc
Confidence 9999720 00112478999999999999999999999 9999999999999999886 233444445599999999998
Q ss_pred CCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhC
Q 037063 348 FGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALG 427 (588)
Q Consensus 348 ~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G 427 (588)
++. |.|+|+++++++.++.+......- .... . .+ ..++...... +++..+++.+.+.
T Consensus 222 l~~-~~~~G~l~~~~~~i~~~~~~~~~~-~~~~----------~------~~-~~~~~~~~~~---~~~~aal~~~~~~- 278 (387)
T PRK09331 222 MAA-SAPSGVLATTEEYADKVFRTSRKF-GVKE----------V------EL-LGCTLRGAPL---VTLMASFPHVVER- 278 (387)
T ss_pred ccC-CCCEEEEEECHHHHhhcccccCCC-cccc----------e------ee-eceecCchHH---HHHHHHHHHHHHH-
Confidence 874 789999999998877654322110 0000 0 00 1122222222 4445667665543
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecC----CCCCcCHHHHHHHHHhCCcE
Q 037063 428 LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDW----NGTRIDPALVQKLADRHNIS 503 (588)
Q Consensus 428 ~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~----~g~~i~~~~v~~~l~~~gI~ 503 (588)
+ ...++...+++++++.|.++ ++++++++.. ...+++.+..+.. .+.......+.+.|.++||.
T Consensus 279 ~-~~~~~~~~~~~~l~~~L~~l---------~g~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~ 346 (387)
T PRK09331 279 V-KRWDEEVKKARWFVDELEKI---------EGFKQLGEKP--RNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIH 346 (387)
T ss_pred H-HHHHHHHHHHHHHHHHHhcC---------CCEEEeccCc--CcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCce
Confidence 2 34455567888999999885 6788886422 2356776654421 11112334577777888996
Q ss_pred eccccccCcccccchHHHHHHHHhhhcCCCCCcCCcc-EEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 504 LSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVS-VVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 504 v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~-~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.-. .+.+ .+|+.. ...+.+|+++++++|++++++
T Consensus 347 ~~~------------------------------~~~~~i~ri~~-~g~t~~di~~l~~aL~~i~~~ 381 (387)
T PRK09331 347 GIK------------------------------PGATKEFKLST-YGLTWEQVEYVADAFKEIAEK 381 (387)
T ss_pred EEc------------------------------cCCceEEEEEe-ccCCHHHHHHHHHHHHHHHHh
Confidence 211 1112 556654 337999999999999998765
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=218.18 Aligned_cols=376 Identities=13% Similarity=0.088 Sum_probs=276.6
Q ss_pred hHHHHHhhhccCCCCCCeeeecCCCCCCCCHHHHHHh----hhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccc
Q 037063 95 QADRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSC----SSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSW 170 (588)
Q Consensus 95 ~~~~iR~~~f~~l~~~~~vyLD~a~~gl~~~~~~~~~----~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~ 170 (588)
-+..+|.. |. +. .+.||||-++-|..|+.+..+. .++|...... + | + .+. .
T Consensus 18 pl~~lr~~-f~-lp-~~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lir-s---------w----~-----~a~-~-- 72 (407)
T COG3844 18 PLAKLRDR-FA-LP-GGVIYLDGNSLGARPRAVTARLQQVATDEWGEGLIR-S---------W----N-----KAK-A-- 72 (407)
T ss_pred chhhhHhh-cc-CC-CCeEEeeccccccCchHHHHHHHHHHHHHHHhhhhh-h---------h----c-----ccC-C--
Confidence 45577764 65 33 7999999999999996555443 2333211100 0 1 1 000 0
Q ss_pred cccCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHH-HHHHhCCCCCCCeE-EEcC-CCchhHHHHHHHHHHhc
Q 037063 171 LQYGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFK-LLAESYPFYSNPRL-LTVY-DHENEAAALMIESSKKR 247 (588)
Q Consensus 171 ~~~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~-lv~~s~~~~~gd~l-l~~~-e~~s~~~~~~~~~a~~~ 247 (588)
...++-+.+-.++|.++|+.++| |+.+.+++-.++ .++.+|..++|+.+ ++.. .+++..+.. ...++-.
T Consensus 73 -----~W~~lp~~lgdklApLiGA~~~E--vvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a-~g~~~~~ 144 (407)
T COG3844 73 -----DWFDLPERLGDKLAPLIGARAGE--VVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIA-EGLADLL 144 (407)
T ss_pred -----chhhchhHHHHHhhhhhcCCCCc--eEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhh-cchhhhh
Confidence 01355668889999999999887 888888877665 55566667778874 4443 344444432 3444444
Q ss_pred CCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCC
Q 037063 248 GARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKD 326 (588)
Q Consensus 248 G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d 326 (588)
|.. .+ -.+.+.+++++++++ +.+.+|.+++++.-||..+++..| ++||++|++++.|-+++++
T Consensus 145 ~~~-----~~-~~~~~~P~~~~~~~~--------dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaG-- 208 (407)
T COG3844 145 GIG-----YD-LEGVIAPRALEEAIT--------DDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAG-- 208 (407)
T ss_pred ccc-----cc-ceeeeChHHHHHhhc--------cceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccC--
Confidence 432 11 224567789999998 899999999999999999999999 9999999999999999998
Q ss_pred CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc-cccccccCCCC
Q 037063 327 MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL-DESSQSKFPES 405 (588)
Q Consensus 327 ~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~-~~~~f~e~GT~ 405 (588)
.-+++|...++||.+.+.||.+..+|.+.++|||.++..+...+...||.|- ..++.... .+.+. ...+| ..||+
T Consensus 209 avp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gh--a~pf~m~~-~y~p~~ga~rf-~~gt~ 284 (407)
T COG3844 209 AVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGH--ARPFAMEE-VYAPGPGARRF-LCGTQ 284 (407)
T ss_pred CcceeecccCCCeeeeeeceeccCCCCCceeEEeccccccccccccccccCC--CCcchhhh-ccCcCccccce-eeCCc
Confidence 5677788888999999999966546999999999999888777777664231 11111110 11111 12478 89999
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCC
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNG 485 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g 485 (588)
++.+. +++..+||.....+|.+++++-..|++++.+-+...+. ...+++.+|...+.||+-|+|..+.
T Consensus 285 ~V~s~---aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~------~~~l~l~tPr~~~~rGsqvS~~hp~--- 352 (407)
T COG3844 285 PVLSL---AALEGALDIFADVDITELRKKSLALTDYFIELVEARCE------YYGLTLVTPRAHEERGSQVSLYHPH--- 352 (407)
T ss_pred chhhh---HHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccc------cCCcEEeccchhhhccceeeEecCc---
Confidence 99886 78889999999999999999999999999998887532 2378999998888899999999875
Q ss_pred CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecC-CCCCHHHHHHHHHHHHH
Q 037063 486 TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALG-CLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 486 ~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg-~~~t~eDv~~li~~l~~ 564 (588)
...|.+.|.++||.... - . .+ .+|+.|. +|++++||...++.|.+
T Consensus 353 ----~~~V~qaLi~rGVigD~---R-----------------~--------P~--vlRfgftPlY~~~~DVw~AV~~L~e 398 (407)
T COG3844 353 ----GYQVMQALIDRGVIGDF---R-----------------E--------PD--VLRFGFTPLYVSFVDVWDAVDALEE 398 (407)
T ss_pred ----HHHHHHHHHHcCccccc---c-----------------C--------CC--eeeecCccceechhHHHHHHHHHHH
Confidence 77888999999995321 0 0 22 8999996 99999999999999999
Q ss_pred hhhhh
Q 037063 565 FLDAD 569 (588)
Q Consensus 565 ~l~~~ 569 (588)
.|+..
T Consensus 399 vL~t~ 403 (407)
T COG3844 399 VLDTL 403 (407)
T ss_pred HHHhh
Confidence 88763
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-25 Score=251.69 Aligned_cols=322 Identities=15% Similarity=0.092 Sum_probs=229.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHH----HHHHHHHHhCCCCC-CC----eE-EEcCCCchhHHHHHHHHHHhc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQS----SAFKLLAESYPFYS-NP----RL-LTVYDHENEAAALMIESSKKR 247 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T----~al~lv~~s~~~~~-gd----~l-l~~~e~~s~~~~~~~~~a~~~ 247 (588)
.++++++|+.+++++|+ + .|+|++|+| +++++++.++ +++ || +| ++..+|++|..+|. ..
T Consensus 567 ~~~~~~~r~~la~i~g~--~--~v~f~pnaga~ge~a~~~vi~~~-~~~~Gd~~r~~vli~~~aH~sn~a~a~-----~~ 636 (993)
T PLN02414 567 QEMFEDLGDLLCEITGF--D--SFSLQPNAGAAGEYAGLMVIRAY-HLSRGDHHRNVCIIPVSAHGTNPASAA-----MC 636 (993)
T ss_pred HHHHHHHHHHHHHHhCC--C--eEEEcCCCcHHHHHHHHHHHHHH-HhccCCCCCCEEEeCCCcCccCHHHHH-----HC
Confidence 68899999999999999 3 399999999 9999999999 766 77 54 46789998776662 36
Q ss_pred CCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCC
Q 037063 248 GARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKD 326 (588)
Q Consensus 248 G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d 326 (588)
|++|+.++++ ++|.+|+++|+++|+. .++++++|+++++||..|...|+++| ++||++|++|++|+++..+.
T Consensus 637 G~~vv~v~~d-~~G~vDle~L~~~i~~-----~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~- 709 (993)
T PLN02414 637 GMKIVVVGTD-AKGNINIEELRKAAEA-----HKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQ- 709 (993)
T ss_pred CCEEEEeccC-CCCCcCHHHHHHHHhc-----cCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhc-
Confidence 9999999998 7899999999999981 11378999999999999999999999 99999999999999986651
Q ss_pred CCCCCCCCCCCcEEEeccCccCCC----CCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccc--
Q 037063 327 MDTLGLSLFKPDFLICSFYKIFGE----NPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS-- 400 (588)
Q Consensus 327 ~~~l~l~~~~~D~vv~S~~K~~G~----~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~-- 400 (588)
+.......+++||+++|.||+|+. +|.|+|++++++.+...+.....+ ... .+ . ++++
T Consensus 710 ~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~---~~~------~~--~-----~r~~~s 773 (993)
T PLN02414 710 VGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVV---PTG------GI--P-----RPEKTQ 773 (993)
T ss_pred cCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccc---cCC------Cc--c-----cccCCC
Confidence 011112234499999999995542 234599999999765544422211 100 00 0 0221
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHHhCHHHH---HHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE
Q 037063 401 KFPESSISGVSSKLVECKGLDHADALGLILI---SNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA 477 (588)
Q Consensus 401 e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i---~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~ 477 (588)
..||.+...+....++..++.++..+|.+.+ .++...+++|+.++|.+. ..+...+|.....+-.++.
T Consensus 774 ~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~---------~~~~~~~~~~~~~hEfv~~ 844 (993)
T PLN02414 774 PLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGH---------YPVLFRGKNGTCAHEFIID 844 (993)
T ss_pred CcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhh---------CCccccCCCCCeeeeEEEe
Confidence 2577665443333566688889988885555 899999999999999872 2233333321101112222
Q ss_pred EE-eecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHH
Q 037063 478 FN-VFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTY 556 (588)
Q Consensus 478 f~-~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~ 556 (588)
+. +++..| ++..++.+.|.++||...+-.+ .+.+.+||+++.+++.+|+|
T Consensus 845 ~~~l~~~~g--~~~~di~krL~d~Gihapt~~~---------------------------pv~~~lmiepTE~~skeelD 895 (993)
T PLN02414 845 LRPFKNTAG--IEPEDVAKRLMDYGFHAPTMSW---------------------------PVPGTLMIEPTESESKAELD 895 (993)
T ss_pred ccccccccC--CCHHHHHHHHHHcCcEEeeecc---------------------------ccCCEEEEEeeeeCCHHHHH
Confidence 22 111112 5567787777799998654110 11228999999999999999
Q ss_pred HHHHHHHHhhhhhh
Q 037063 557 RLWAFVSRFLDADF 570 (588)
Q Consensus 557 ~li~~l~~~l~~~~ 570 (588)
+|+++|..+.++-.
T Consensus 896 rf~~al~~i~~e~~ 909 (993)
T PLN02414 896 RFCDALISIREEIA 909 (993)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876653
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-25 Score=235.32 Aligned_cols=366 Identities=13% Similarity=0.044 Sum_probs=231.6
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
.+.+.|..+..+..++.++++..... ... +.++ .|+.+ .+ .| ..++.++++++++
T Consensus 20 ~~~~~l~~g~~~~~~p~~~~~~~~~~-~~~--~~~~------~~~~~-----------~~---~g--~~~~~~~~~~~la 74 (398)
T cd00613 20 QSMSFLGSGTYKHNPPAVIKRNILEN-EFY--TAYT------PYQPE-----------IS---QG--RLQALFELQTMLC 74 (398)
T ss_pred cCcccccccccCCcCcHHHHHHhccc-cCc--ccCC------CCChh-----------hh---hh--HHHHHHHHHHHHH
Confidence 45688998888888777777653332 110 0000 00000 00 01 2578889999999
Q ss_pred HHhCCCCCCceEEEecCHHHHHHHHHHhCCCCC--CCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHH
Q 037063 190 DFMNISEDDYTLVFTANQSSAFKLLAESYPFYS--NPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSG 266 (588)
Q Consensus 190 ~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~--gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e 266 (588)
+++|+++++ ++|+.|++.+.+.++.+..+.+ ||+|++ ...|++. ...+....++.|++++.++.+ +++.++.+
T Consensus 75 ~~~g~~~~~--v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~-~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~ 150 (398)
T cd00613 75 ELTGMDVAN--ASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTN-PAVARTRGEPLGIEVVEVPSD-EGGTVDLE 150 (398)
T ss_pred HHHCCCccc--eeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcch-HHHHHHhcccCCcEEEEeccC-CCCCcCHH
Confidence 999997654 7778766655444433332555 899765 4455553 333333434567999999986 56678999
Q ss_pred HHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCH-HHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEecc
Q 037063 267 KLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSY-MWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSF 344 (588)
Q Consensus 267 ~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl-~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~ 344 (588)
+|++++. +++++|++++++ ++|.+.|+ ++| ++|+++|+++|+|+++..+. ...+...+++|++++|+
T Consensus 151 ~l~~~i~--------~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~--~~~~~~~~~~d~~~~s~ 219 (398)
T cd00613 151 ALKEEVS--------EEVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLT--GLKPPGEYGADIVVGNL 219 (398)
T ss_pred HHHHhcC--------CCeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEecccccc--CCCChHHcCCCEEEeec
Confidence 9999987 789999999975 89999996 999 99999999999999876541 12222234599999999
Q ss_pred CccCCC---CCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc---cccccccCCCCCccchhh--HHHH
Q 037063 345 YKIFGE---NPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL---DESSQSKFPESSISGVSS--KLVE 416 (588)
Q Consensus 345 ~K~~G~---~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~---~~~~f~e~GT~~~~~~~~--~~al 416 (588)
||+++. ++.|+|++++++++++.+.+...++.+... . .+...+... ...+| +.||.++..... .++.
T Consensus 220 ~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~r~-e~~~~~~~~~~~~~~~~a 294 (398)
T cd00613 220 QKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAE--G--NRAFRLALQTREQHIRR-EKATSNICTGQALLALMA 294 (398)
T ss_pred cccCCCCCCCCCceeEEEEhhhhHhhCCCCeeccccccC--C--CcceEEecccchhhccc-ccccccceecHHHHHHHH
Confidence 998730 124689999999888776654433211000 0 000011000 01245 567766553211 1222
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHH
Q 037063 417 CKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKL 496 (588)
Q Consensus 417 ~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~ 496 (588)
..+++.+...|++++.++.++++++++++|.++ +...+ +. ..+.+++.|.+....+ .+...+.+.
T Consensus 295 ~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~---------~~~~~--~~--~~~~~~v~~~~~~~~~--~~~~~~~~~ 359 (398)
T cd00613 295 AMYIVYLGPEGLKEIAERAHLNANYLAKRLKEV---------GGVLP--FN--GPFFHEFVLRLPPLYG--IRAEDLAKA 359 (398)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhc---------CCccc--CC--CCeeEEEEEEcCCcch--HHHHHHHHh
Confidence 234455555578899999999999999999986 22221 11 1234566676653111 345667777
Q ss_pred HHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHH
Q 037063 497 ADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 497 l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l 562 (588)
|.++||.+..-. . .+...||+|+++++|.||||++++.|
T Consensus 360 L~~~gi~~~~~~-------------------~--------~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 360 LIDGGFHAPTMY-------------------L--------PVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred hhhcCccccccc-------------------c--------CCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 778888653210 0 12238999999999999999999864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=228.97 Aligned_cols=335 Identities=12% Similarity=0.090 Sum_probs=233.1
Q ss_pred CeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHH
Q 037063 111 NYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMD 190 (588)
Q Consensus 111 ~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~ 190 (588)
...++-|--..-+.+.+++.+..++.. .++||.|.+ .+|....++++++++.+++
T Consensus 23 ~~~~~gy~~~~~~~~~~~~~~~~~~~~-~~gnP~s~~------------------------~~g~~a~~~e~~v~~~ia~ 77 (374)
T PLN03032 23 SSVHFGYPYNLDFDYGELSQLMKYSIN-NLGDPFIES------------------------NYGVHSRQFEVGVLDWFAR 77 (374)
T ss_pred hhhccCCCchhccChHHHHHHHHhccc-CCCCCcccC------------------------CCCccHHHHHHHHHHHHHH
Confidence 344555555555666778888766543 468884321 1344568999999999999
Q ss_pred HhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHH
Q 037063 191 FMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKL 268 (588)
Q Consensus 191 ~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l 268 (588)
++|+++++...+||+|+|+|+.+.+.+.. ..++..|+ +..+|+| + .+.++..|.+++.||++ +++++|+++|
T Consensus 78 llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~S--v---~kaa~~lg~~~~~V~~d-~~g~id~~~L 151 (374)
T PLN03032 78 LWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYS--V---FKAARMYRMEAVKVPTL-PSGEIDYDDL 151 (374)
T ss_pred HhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeH--H---HHHHHHcCCCCeEeeeC-CCCcCcHHHH
Confidence 99998776445999999999887765532 12344644 6677875 2 34566778889999998 8899999999
Q ss_pred HHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcC-----cEEEEeCCCcCC---CC--CCCCCCCCCCC
Q 037063 269 MKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKG-----WHVLLDATALGS---KD--MDTLGLSLFKP 337 (588)
Q Consensus 269 ~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g-----~~vvvDaa~~~~---~d--~~~l~l~~~~~ 337 (588)
+++|+++ ..++.+|++++.+|++|.+.|+++| ++|+++| ++++||||+.++ .+ ...+++. .++
T Consensus 152 ~~~i~~~-----~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~-~~v 225 (374)
T PLN03032 152 ERALAKN-----RDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFR-KPI 225 (374)
T ss_pred HHHHHHc-----CCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCC-cCC
Confidence 9999821 1268899999999999999999999 9999996 589999998775 11 1123443 359
Q ss_pred cEEEeccCccCCCCCCceEEEEEeCcchhcccC--CCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHH
Q 037063 338 DFLICSFYKIFGENPSGFGCLFVKKSSASVLSG--STSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLV 415 (588)
Q Consensus 338 D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~--~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~a 415 (588)
|.+++|+||++|. |.|+|+|++|++.++.+.. .+.. . .+. - -.|+.+-... +.
T Consensus 226 DSis~s~HK~~g~-P~g~G~ll~r~~~~~~~~~~~~Yl~---~-------~d~---------t--i~gSR~g~~~---l~ 280 (374)
T PLN03032 226 GSVSVSGHKFLGC-PMPCGVALTRKKHVKALSQNVEYLN---S-------RDA---------T--IMGSRNGHAP---LY 280 (374)
T ss_pred cEEEECcccccCC-CcCeEEEEEEchhhHhhccCCcccC---C-------CCC---------c--ccCCCchHHH---HH
Confidence 9999999999987 9999999999977654432 1111 0 000 0 1344432221 45
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHH
Q 037063 416 ECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQK 495 (588)
Q Consensus 416 l~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~ 495 (588)
+..+|..+-..|+.++.++..++++++.+.|.+. ++++... +...+|+|..+. .+.
T Consensus 281 ~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~----------~~~~~~~----p~~~~V~f~~~~-------~~~--- 336 (374)
T PLN03032 281 LWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA----------GLTCRLN----ELSSTVVFERPM-------DEA--- 336 (374)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----------CCcEEEC----CCceEEEEcCCC-------cHh---
Confidence 5567777766678889999999999999999884 2333332 235677776553 111
Q ss_pred HHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 496 LADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 496 ~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
+. +|..+.+- .. .+|+.+....+.+.||+|++.|++
T Consensus 337 -~~-~~w~l~~~-----------------------------~~--~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 337 -FI-KKWQLACE-----------------------------GD--IAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred -Hh-heeeeccc-----------------------------CC--EEEEEECCCCCHHHHHHHHHHHhc
Confidence 11 34544310 11 688888777789999999998765
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-25 Score=252.93 Aligned_cols=347 Identities=16% Similarity=0.150 Sum_probs=241.3
Q ss_pred CCCCCeeeecCCCCCC----CCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 107 LSLNNYVCFDYIGHGL----FSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 107 l~~~~~vyLD~a~~gl----~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
|..++.+|+++.|.|+ +|..+++++......-..-.| | ......| .-+.+.
T Consensus 97 la~kN~~~~~fiG~G~y~~~~P~~v~~~i~~~~~~~TaytP--------------Y---------qaEisQG--~lqal~ 151 (993)
T PLN02414 97 LASKNKVFKSYIGMGYYNTHVPPVILRNILENPGWYTQYTP--------------Y---------QAEIAQG--RLESLL 151 (993)
T ss_pred HHhcCCccccccCCCCCCccCCHHHHHHHHhChHHHhhcCC--------------C---------chHHHHH--HHHHHH
Confidence 4446788999999999 777776776533311000001 0 0011112 156788
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCC--CeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCC
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSN--PRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWP 259 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~g--d~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~ 259 (588)
+.+..|++++|+++++ +.++.|+|++.+.++.++++++| ++|+ +..+|+++...| ...++..|++|+.++.+ .
T Consensus 152 ~~Qt~ia~LtG~~~an--aSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~-~t~a~~~GieV~~v~~~-~ 227 (993)
T PLN02414 152 NYQTMITDLTGLPMSN--ASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVC-QTRADGLGLEVVVADEK-D 227 (993)
T ss_pred HHHHHHHHHhCCChhh--EeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHH-HHhhhhcCCEEEEecch-h
Confidence 9999999999999876 99999999999999888888866 5654 678999866665 78888999999999874 1
Q ss_pred CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEE--eCCCcCCCCCCCCCCCCCC
Q 037063 260 NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLL--DATALGSKDMDTLGLSLFK 336 (588)
Q Consensus 260 ~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvv--Daa~~~~~d~~~l~l~~~~ 336 (588)
.+ ... +.+ ..++.+..|.+|.+.|+++| ++||++|++++| |..+.++. . ....++
T Consensus 228 ---~~------~~~--------~~v-~~vlvq~P~~~G~v~dv~~I~~~ah~~GaL~iVaad~lal~~l--~--~pge~G 285 (993)
T PLN02414 228 ---FD------YSS--------GDV-CGVLVQYPATDGEVLDYAEFVKNAHANGVKVVMATDLLALTML--K--PPGEWG 285 (993)
T ss_pred ---hc------ccc--------Cce-EEEEEecCCCCeEEcCHHHHHHHHHHcCCEEEEEECHHHhcCC--C--CHhhcc
Confidence 00 111 222 23346777889999999999 999999999999 44444442 1 133444
Q ss_pred CcEEEeccCccCCCCCCc-----eEEEEEeCcchhcccCCCCCCCceEeeecCCCcc-ccccccc-ccccccCCCCCccc
Q 037063 337 PDFLICSFYKIFGENPSG-----FGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEI-IELETLD-ESSQSKFPESSISG 409 (588)
Q Consensus 337 ~D~vv~S~~K~~G~~P~G-----~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~-~~~~~~~-~~~f~e~GT~~~~~ 409 (588)
+||+++++|||.+ |.| .|+|+++++....++....|+ .+. ......+ ..++.+. +.|| |.||.|+..
T Consensus 286 ADi~vgsgqKwg~--P~G~GGP~aGflavr~~~~r~~PgriVG~--s~d-~~g~~~~~l~LqtReqhiRr-EkaTsNict 359 (993)
T PLN02414 286 ADIVVGSAQRFGV--PMGYGGPHAAFLATSQEYKRLMPGRIIGV--SVD-SSGKPALRMAMQTREQHIRR-DKATSNICT 359 (993)
T ss_pred CcEEEECCCcccc--CCCCCCCCeeEEEECHHHHhhCCCcccCc--ccC-CCCCcccccccccccchhhh-cccccchhH
Confidence 9999999999873 555 799999999876555455552 111 0100000 0111222 2377 899999987
Q ss_pred hhhHHHHHHHHHH-----HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCC
Q 037063 410 VSSKLVECKGLDH-----ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWN 484 (588)
Q Consensus 410 ~~~~~al~~aL~~-----l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~ 484 (588)
. .++.+++.. +...|+++|.+|+..|+.++.++|.++ ++++..+ ....+++|.+.+
T Consensus 360 ~---qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~----------G~~~~~~----~~f~~vt~~~~~-- 420 (993)
T PLN02414 360 A---QALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKL----------GFQVQSL----PFFDTVKVKCSD-- 420 (993)
T ss_pred H---HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhc----------CCccCCC----CCcCeEEEecCC--
Confidence 6 455555542 334689999999999999999999874 3565554 224588888643
Q ss_pred CCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 485 GTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 485 g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
+..+.+.|.++||.++.- +.+.||+|++.+||.|||++|+++|..
T Consensus 421 -----~~~v~~~L~~~gI~l~~~------------------------------~~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 421 -----ADAIADAAAKVGINLRVV------------------------------DANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred -----HHHHHHHHHHCCCeeEEe------------------------------cCCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 567777788899987632 112799999999999999999999974
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-24 Score=226.15 Aligned_cols=344 Identities=11% Similarity=0.050 Sum_probs=229.6
Q ss_pred CCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHhCCCCCC
Q 037063 119 GHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMNISEDD 198 (588)
Q Consensus 119 ~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lga~~~e 198 (588)
..+++.+.+++++.++- .-++||++++ + . .+......+.++++.+++++|+ ++
T Consensus 9 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------------------~-~--~~~~~~~~~~~l~~~la~~~g~--~~ 61 (361)
T cd06452 9 RGGRLTPEARKALIEWG--DGYSVCDFCR--------------------G-R--LDEIEKPPIKDFHHDLAEFLGM--DE 61 (361)
T ss_pred cCCCCCHHHHHHHHHHh--cccCCccccc--------------------c-c--cccccCchHHHHHHHHHHHcCC--ce
Confidence 34677888888876554 2245553211 0 0 0111135678999999999999 33
Q ss_pred ceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEeccCC-CCccCHHHHHHHHhhhc
Q 037063 199 YTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEFAWP-NLRIHSGKLMKKIVGKR 276 (588)
Q Consensus 199 ~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~-~~~i~~e~l~~~i~~~~ 276 (588)
+++|+|+|+++.+++.++ +++||+|++. ..|++. + ..++..|++++.++.++. ++.+|+++++++++...
T Consensus 62 --i~~~~g~t~al~~~l~~~-~~~gd~Vl~~~~~~~~~-~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 133 (361)
T cd06452 62 --ARVTPGAREGKFAVMHSL-CEKGDWVVVDGLAHYTS-Y----VAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVK 133 (361)
T ss_pred --EEEeCCHHHHHHHHHHHh-cCCCCEEEEcCCcchHH-H----HHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHh
Confidence 999999999999999998 8999997755 556542 2 245778999999999742 24799999999986200
Q ss_pred cccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCCCCCCce
Q 037063 277 KKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGF 355 (588)
Q Consensus 277 ~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~ 355 (588)
+...+++++|++++++|+||...|+++| ++|+++|+++++|+++..+ ..++....+.+|++++|+||+++. |.|+
T Consensus 134 -~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g--~~~~~~~~~~~d~~~~s~~K~l~~-~~~~ 209 (361)
T cd06452 134 -DEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVG--RMPVSGKELGADFIVGSGHKSMAA-SAPI 209 (361)
T ss_pred -hccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccC--CcCCCHHHcCCCEEEecCCccccC-CCCe
Confidence 0001368999999999999999999999 9999999999999998875 223333334589999999998874 7789
Q ss_pred EEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHH
Q 037063 356 GCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRA 435 (588)
Q Consensus 356 G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~ 435 (588)
|++++++++++++....... +. +. . .+ ..+|...... +++..+++.+.+. ++.+ .+.
T Consensus 210 G~l~~~~~~~~~l~~~~~~~-~~-~~---------~------~~-~~~~~~~~~~---~~~~~al~~~~~~-~~~~-~~~ 266 (361)
T cd06452 210 GVLATTEEWADIVFRTSQMF-KI-KE---------V------EL-LGCTLRGAPL---VTLMASFPHVKER-VKRW-DEE 266 (361)
T ss_pred EEEEECHHHHHHHhcccccc-cc-ce---------e------ee-eccccCchHH---HHHHHHHHHHHHH-HHHH-HHH
Confidence 99999998887764432110 11 00 0 01 2334444332 4445666654332 2333 333
Q ss_pred HHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecC----CCCCcCHHHHHHHHHhCCcEeccccccC
Q 037063 436 RYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDW----NGTRIDPALVQKLADRHNISLSCGFLQN 511 (588)
Q Consensus 436 ~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~----~g~~i~~~~v~~~l~~~gI~v~~G~~c~ 511 (588)
...++++++.|.++ ++++++++.. ...+++.|..... .+.......+.+.|.++||.+..
T Consensus 267 ~~~~~~l~~~L~~l---------~g~~v~~~~~--~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~----- 330 (361)
T cd06452 267 VEKARWFVAELEKI---------EGIKQLGEKP--KNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGIK----- 330 (361)
T ss_pred HHHHHHHHHHHhcC---------CCeEEECCCC--CCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEEc-----
Confidence 44568899999884 6788886432 3556777765420 00001123466777778997421
Q ss_pred cccccchHHHHHHHHhhhcCCCCCcCCc-cEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 512 IFFSGEYEQERVRVLETRSGTNETRSGV-SVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 512 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~-~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
.+. ..+|++... .+.||+++++++|++++
T Consensus 331 -------------------------~~~~~~~ri~~~g-~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 331 -------------------------PGLTRYFKLSTYG-LTWEQVEYVVDAFKEIA 360 (361)
T ss_pred -------------------------CCCceEEEEEecC-CCHHHHHHHHHHHHHHh
Confidence 111 179999822 59999999999998754
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=232.47 Aligned_cols=288 Identities=15% Similarity=0.057 Sum_probs=209.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCC-----------CCCC--eEEEcC-CCchhHHHHHHHH
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPF-----------YSNP--RLLTVY-DHENEAAALMIES 243 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~-----------~~gd--~ll~~~-e~~s~~~~~~~~~ 243 (588)
.++++++++.+++++|++.++..++||+|+|+|+.+++.++.- .+++ .|+++. .|.+ . ...
T Consensus 37 ~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~-~----~~~ 111 (345)
T cd06450 37 TEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVS-V----EKA 111 (345)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhH-H----HHH
Confidence 6788999999999999962334599999999999988877621 1333 455544 4543 2 234
Q ss_pred HHhcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCc
Q 037063 244 SKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATAL 322 (588)
Q Consensus 244 a~~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~ 322 (588)
++..|++++.++++ +++.+|+++|++++.+. .....+++++++++++|+||...|+++| ++|+++|+++++|+++.
T Consensus 112 ~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~~--~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~ 188 (345)
T cd06450 112 AAYLDVKVRLVPVD-EDGRMDPEALEAAIDED--KAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYG 188 (345)
T ss_pred HHHHhcCeEEeeeC-CCCCcCHHHHHHHHHHH--HHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhh
Confidence 45569999999997 56789999999999721 1112278899999999999999999999 99999999999999977
Q ss_pred CCC---CCC-CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccc
Q 037063 323 GSK---DMD-TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESS 398 (588)
Q Consensus 323 ~~~---d~~-~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~ 398 (588)
.+. +.. .......++|++++|+||+++. |.|+|+++++ .
T Consensus 189 ~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~-p~g~g~~~~~----------~-------------------------- 231 (345)
T cd06450 189 GFLLPFPEPRHLDFGIERVDSISVDPHKYGLV-PLGCSAVLVR----------A-------------------------- 231 (345)
T ss_pred HHHhhChhhHHHhcCccccCEEEEchhHhhCC-CcchHHHHHH----------H--------------------------
Confidence 652 110 1001112489999999997764 8899988766 0
Q ss_pred cccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEE
Q 037063 399 QSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAF 478 (588)
Q Consensus 399 f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f 478 (588)
.++..+++.+...|++++.++...+++++.+.|.++ ++++++++ .+.+++.|
T Consensus 232 ---------------~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~~----~~~~iv~f 283 (345)
T cd06450 232 ---------------LKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRAD---------PGFELLGE----PNLSLVCF 283 (345)
T ss_pred ---------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---------CCeEEecC----CceeEEEE
Confidence 123356677766788999999999999999999885 56777764 34689999
Q ss_pred EeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC-CCHHHHHH
Q 037063 479 NVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL-TNFEDTYR 557 (588)
Q Consensus 479 ~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~-~t~eDv~~ 557 (588)
.+.+.....++...+.+.|.++|+.+..+... .+...+|+|++.+ ||.|||++
T Consensus 284 ~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~--------------------------~~~~~lRis~~~~~~t~~di~~ 337 (345)
T cd06450 284 RLKPSVKLDELNYDLSDRLNERGGWHVPATTL--------------------------GGPNVLRFVVTNPLTTRDDADA 337 (345)
T ss_pred EECCcchhhHHHHHHHHHHHhcCCEEEEeeEE--------------------------CCeEEEEEEecCCCCCHHHHHH
Confidence 87642000134566777777776654433111 1122899999976 59999999
Q ss_pred HHHHHHH
Q 037063 558 LWAFVSR 564 (588)
Q Consensus 558 li~~l~~ 564 (588)
+++.|++
T Consensus 338 l~~~l~~ 344 (345)
T cd06450 338 LLEDIER 344 (345)
T ss_pred HHHHHHh
Confidence 9999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=229.37 Aligned_cols=332 Identities=11% Similarity=0.032 Sum_probs=219.0
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
...=|||++..+++.+.+.+++..+.... |+|. .+...++...| ..++++++|+.||
T Consensus 10 ~s~~YL~~~~~~~~~~~~~~~~~~~~~~~----p~~~-----------------~~~~gs~~~~g--~~~~~~~~e~~la 66 (370)
T PRK05937 10 VTNDFLGFSRSDTLVHEVEKRYRLYCRQF----PHAQ-----------------LGYGGSRAILG--PSSLLDDLEHKIA 66 (370)
T ss_pred ECCCccCCCCCHHHHHHHHHHHHHhcccc----CCCC-----------------CCCCCcCcccC--ChHHHHHHHHHHH
Confidence 45569999999999999999886654221 3220 01112232222 2678999999999
Q ss_pred HHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHH
Q 037063 190 DFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKL 268 (588)
Q Consensus 190 ~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l 268 (588)
+++|++ ..++|++|.+..+ .++..+ .++|+.|++ ..+|.+ ....+. . ..|..+. ++ ..|+++|
T Consensus 67 ~~~~~~---~~l~~~sG~~a~~-~~~~~~-~~~~d~ii~d~~~H~s-v~~~~~-~--~~~~~~~-~~------~~d~~~l 130 (370)
T PRK05937 67 HFHGAP---EAFIVPSGYMANL-GLCAHL-SSVTDYVLWDEQVHIS-VVYSLS-V--ISGWHQS-FR------HNDLDHL 130 (370)
T ss_pred HHhCCC---eEEEECChHHHHH-HHHHHh-CCCCCEEEEEhhhhHH-HHHHHH-H--cCCceEE-ec------CCCHHHH
Confidence 999994 2488888886554 344444 456777776 445544 333322 2 1243332 22 3588999
Q ss_pred HHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC---CCCC----CCCCCCCCCcEE
Q 037063 269 MKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS---KDMD----TLGLSLFKPDFL 340 (588)
Q Consensus 269 ~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~---~d~~----~l~l~~~~~D~v 340 (588)
+++|+.. +...+++.+|++++++|++|.+.|+++| ++|+++|++++||++|..+ .+.. .++.. ..+.+
T Consensus 131 ~~~l~~~--~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~--~~~~~ 206 (370)
T PRK05937 131 ESLLESC--RQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYE--NFYAV 206 (370)
T ss_pred HHHHHhh--hccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCC--CCcEE
Confidence 9998721 1111356788899999999999999999 9999999999999999875 2221 12221 13466
Q ss_pred EeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHH
Q 037063 341 ICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGL 420 (588)
Q Consensus 341 v~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL 420 (588)
+.|++|++| |.|.|+++.++ ....+...... . +| +.| .+...+ +++.+++
T Consensus 207 ~~tlsK~~g--~~G~~vl~~~~-~~~~~~~~~~~---------------------~-~~-s~~-~~~~~~---~a~~aal 256 (370)
T PRK05937 207 LVTYSKALG--SMGAALLSSSE-VKQDLMLNSPP---------------------L-RY-STG-LPPHLL---ISIQVAY 256 (370)
T ss_pred EEechhhhh--cCceEEEcCHH-HHHHHHHhCCC---------------------C-ee-cCC-CCHHHH---HHHHHHH
Confidence 789999999 78988887644 33222211100 0 23 333 233333 6778999
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhC
Q 037063 421 DHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRH 500 (588)
Q Consensus 421 ~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~ 500 (588)
+++...| +.+.++++.+++++.+.|... + .+.++.+.+.+ .....+.+.|.++
T Consensus 257 ~~l~~~~-~~~~~~l~~l~~~l~~~l~~~---------------~------~~~~~~i~~~~-----~~~~~~~~~L~~~ 309 (370)
T PRK05937 257 DFLSQEG-ELARKQLFRLKEYFAQKFSSA---------------A------PGCVQPIFLPG-----ISEQELYSKLVET 309 (370)
T ss_pred HHHHhCc-HHHHHHHHHHHHHHHHhcCCC---------------C------CCCEEEEEeCC-----hhHHHHHHHHHHC
Confidence 9998877 667889999999998876541 0 01233345544 3456788888999
Q ss_pred CcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 501 NISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 501 gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
||.++. +|.+ ..+.||+|++.++|.|||+++++.|++++++
T Consensus 310 gi~v~~--~~~~-------------------------~~~~iRis~~~~~t~edid~l~~~L~~~~~~ 350 (370)
T PRK05937 310 GIRVGV--VCFP-------------------------TGPFLRVNLHAFNTEDEVDILVSVLATYLEK 350 (370)
T ss_pred CeeEEe--eCCC-------------------------CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 998863 3421 1228999999999999999999999998754
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-24 Score=225.59 Aligned_cols=296 Identities=15% Similarity=0.091 Sum_probs=214.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC---------------eEEEcCCCchhHH-HHHH
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP---------------RLLTVYDHENEAA-ALMI 241 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd---------------~ll~~~e~~s~~~-~~~~ 241 (588)
.++++++++++++++|++ .+++|+|+|+|+.+++.++ +++|| +|+++.+|..+.. .+ .
T Consensus 44 ~~~~~~~~~~~a~~~g~~----~~~~~~g~t~al~~al~al-~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~-~ 117 (363)
T TIGR01437 44 KELVNKTGEYIANLLGVE----DAVIVSSASAGIAQSVAAV-ITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPV-E 117 (363)
T ss_pred HHHHHHHHHHHHHhhCCC----eEEEEcCHHHHHHHHHHHH-hcCCCcchhhcccccccccceEEEECccchhcCCch-H
Confidence 578899999999999984 2899999999999999999 88888 7766665554221 12 3
Q ss_pred HHHHhcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEE-EeCCCCCCCccCCHHHH-HHHHHcCcEEEEeC
Q 037063 242 ESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFV-FPLQSKVTGARYSYMWM-SVAAEKGWHVLLDA 319 (588)
Q Consensus 242 ~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~-~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDa 319 (588)
..+...|+++++++++ +.+|+++++++|+ ++|++++ ++..+|++|...|+++| ++||++|+++++|+
T Consensus 118 ~~~~~~g~~~v~v~~~---~~~d~~~le~ai~--------~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~ 186 (363)
T TIGR01437 118 TMVRLGGGKVVEAGYA---NECSAEQLEAAIT--------EKTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDA 186 (363)
T ss_pred HHHHhcCCeEEEEcCC---CCCCHHHHHHhcC--------hhceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEEC
Confidence 4456679999999874 4599999999998 7788665 56678899999999999 99999999999999
Q ss_pred CCcCCCC-CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccc
Q 037063 320 TALGSKD-MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESS 398 (588)
Q Consensus 320 a~~~~~d-~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~ 398 (588)
+|..... ...+ ++|++++|+||+++. |. .|+++.+++.++.+++...+. +. .
T Consensus 187 a~~~~~~~~~~~-----g~D~~~~S~~K~l~g-p~-~G~l~~~~~~i~~~~~~~~~~-~~-------------------~ 239 (363)
T TIGR01437 187 AAEEDLQKYYRL-----GADLVIYSGAKAIEG-PT-SGLVLGKKKYIEWVKLQSKGI-GR-------------------A 239 (363)
T ss_pred CCCCchHHHHHc-----CCCEEEEeCCcccCC-Cc-eEEEEEcHHHHHHHHhccCCC-cc-------------------e
Confidence 9985421 1123 389999999995542 77 799998887777665433321 10 2
Q ss_pred cccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc---ccE
Q 037063 399 QSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR---GPS 475 (588)
Q Consensus 399 f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r---g~i 475 (588)
+ +.|+.+ ++++.++++++.+.|.+.+.++.+. ++++.++|.++ ++++++.+...... ...
T Consensus 240 ~-~~~~~~------~~gl~aAl~~~~~~~~~~~~~~~~~-~~~l~~~L~~i---------~g~~~~~~~~~~~~~~~~~~ 302 (363)
T TIGR01437 240 M-KVGKEN------ILGLTAALEQYLSTGKESGAEMVAK-LTPFIEALNTL---------KGVSASIVQDEAGRDIARAE 302 (363)
T ss_pred e-ccCHHH------HHHHHHHHHHHHccCcccHHHHHHH-HHHHHHHHhcC---------CCeEEEEecCCCCCcCceEE
Confidence 2 444433 2677889999888787777777665 55799999884 67887753221111 134
Q ss_pred EEEEeecCCCCCcCHHHHHHHHHhCC--cEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHH
Q 037063 476 LAFNVFDWNGTRIDPALVQKLADRHN--ISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFE 553 (588)
Q Consensus 476 v~f~~~~~~g~~i~~~~v~~~l~~~g--I~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~e 553 (588)
+.|+... ..+++..+.+.|.+.| |.+|.- . ...+.+|+++.. ++++
T Consensus 303 v~~~~~~---~g~~~~~l~~~L~~~~~~I~~r~~-~---------------------------~~~~~~~l~~~~-~~~~ 350 (363)
T TIGR01437 303 IRFDESE---LGMTAADVVQALRQGEPAIYTRGY-K---------------------------ANEGIIEIDPRS-VTGG 350 (363)
T ss_pred EEEeccC---CCCCHHHHHHHHhcCCCCEEEeee-e---------------------------ecCCeEEEEeec-CCHH
Confidence 5555431 1267889999998777 555531 0 112288999875 5599
Q ss_pred HHHHHHHHHHHhh
Q 037063 554 DTYRLWAFVSRFL 566 (588)
Q Consensus 554 Dv~~li~~l~~~l 566 (588)
|+++++++|++++
T Consensus 351 e~~~~~~~l~~~~ 363 (363)
T TIGR01437 351 QLDIIVERIREIV 363 (363)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998764
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-23 Score=219.50 Aligned_cols=311 Identities=10% Similarity=0.065 Sum_probs=212.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
...+.+.++.+|+++|++ + +++++|+++++.+++.++ +++||+|+++ .+|++ .+ ..++..|++++.++.
T Consensus 50 ~~~~~~~~e~lA~~~g~~--~--~~i~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~h~s-~~----~~~~~~g~~~~~~~~ 119 (370)
T TIGR02539 50 KPPIHDFLEDLAEFLGMD--E--ARVTHGAREGKFAVMHAL-CKEGDWVVLDGLAHYT-SY----VAAERAGLNVKEVPH 119 (370)
T ss_pred chHHHHHHHHHHHHhCCC--c--eEEECChHHHHHHHHHHh-hCCCCEEEECCcccHH-HH----HHHHHcCCEEEEEec
Confidence 345678899999999995 2 667899999999999999 7999997764 56665 22 235778999999997
Q ss_pred cC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCC
Q 037063 257 AW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSL 334 (588)
Q Consensus 257 ~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~ 334 (588)
+. +++.+|+++|+++++.. .+...+++++|++++++|++|...|+++| ++|+++|+++++|+++..+. .+++...
T Consensus 120 ~~~~~~~~d~~~l~~~l~~~-~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~--~~~~~~~ 196 (370)
T TIGR02539 120 TGHPEYKVDPEGYGEVIEEV-EDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGR--MPVSAKE 196 (370)
T ss_pred CCcccCCcCHHHHHHHHHHh-hhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCC--cCCCHHH
Confidence 52 34778999999998621 00111368899999999999999999999 99999999999999988862 2222223
Q ss_pred CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHH
Q 037063 335 FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKL 414 (588)
Q Consensus 335 ~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~ 414 (588)
+.+|+++.|+||++|. +.++|++++++++++.+...... ..++.. .+ ..+|...... .
T Consensus 197 ~~~di~v~s~sK~~~~-~g~~G~l~~~~~~i~~l~~~~~~--~~~~~~---------------~~-~~~~~~~~~~---~ 254 (370)
T TIGR02539 197 IGADFIVGSGHKSMAA-SGPCGVLGMSEEWEDIVLRKSRY--SPVKEV---------------EL-LGCTSRGAPI---V 254 (370)
T ss_pred cCCCEEEeeCcccccC-CCCEEEEEECHHHHhhhcccccC--Ccccee---------------ee-ecccccccHH---H
Confidence 4589999999999984 56699999999998877654322 111000 00 1223332222 3
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCC----CCCcCH
Q 037063 415 VECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWN----GTRIDP 490 (588)
Q Consensus 415 al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~----g~~i~~ 490 (588)
++..+++...+. ++... +....+++++++|.++ +++++++.. ..++++.+.++... |..-..
T Consensus 255 ~~~~al~~~~~~-l~~~~-~~~~~~~~l~~~L~~~----------g~~~~~~~~--s~t~~v~~~~~~~~~~~~~~~~~~ 320 (370)
T TIGR02539 255 TMMASFPHVVER-VKRWD-EEVKKTRWFVAELEDI----------GFIQLGQKP--KEHDLVKFETPGFHEIAQKHKRRG 320 (370)
T ss_pred HHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHhC----------CcEEEccCC--CcCceEEEECCchhHHhhhhcccc
Confidence 444556543221 23222 3334467899999885 366654322 35678877764310 111123
Q ss_pred HHHHHHHHhCCcE-eccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 491 ALVQKLADRHNIS-LSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 491 ~~v~~~l~~~gI~-v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
..+.+.|.++||. ++.| ....+|+|+. ..+.||++++++.|++++++
T Consensus 321 ~~~~~~L~e~GI~~ir~~------------------------------~~~~iRis~~-~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 321 YFLYEELKKRGIHGIRSG------------------------------QTKYFKLSVY-GLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred HHHHHHHHhCCCccccCC------------------------------cceEEEEEec-CCCHHHHHHHHHHHHHHHHh
Confidence 4577788888996 5432 0128999973 45999999999999988653
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=222.68 Aligned_cols=350 Identities=14% Similarity=0.086 Sum_probs=246.8
Q ss_pred CeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHH
Q 037063 111 NYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMD 190 (588)
Q Consensus 111 ~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~ 190 (588)
.++|+=.+|-+.+|..|++++.+.+.. +.+. +++...+++++ ..-.++++++++.+.+
T Consensus 6 ~~~~~f~pGP~~lp~~Vl~~~~~~~~~--~~~~----------g~s~~~~sHRs----------~~f~~i~~~~~~~L~~ 63 (365)
T PLN02452 6 GRVFNFSAGPATLPANVLAKAQAELYN--WEGS----------GMSVMEMSHRG----------KEFLSIIQKAEADLRE 63 (365)
T ss_pred CceEeeeCCCCCCCHHHHHHHHHHHhc--cccc----------CccccccCCCc----------hHHHHHHHHHHHHHHH
Confidence 346666788889999999998766421 1111 11111122211 1126899999999999
Q ss_pred HhCCCCCCceEEEe-cCHHHHHHHHHHhCCCCCCCeE-EEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCC--CccCHH
Q 037063 191 FMNISEDDYTLVFT-ANQSSAFKLLAESYPFYSNPRL-LTVYDHENEAAALMIESSKKRGARVSSAEFAWPN--LRIHSG 266 (588)
Q Consensus 191 ~lga~~~e~~vvft-~g~T~al~lv~~s~~~~~gd~l-l~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~--~~i~~e 266 (588)
++++ |++|.|+|. .|+|.++..+..++ +.+|+++ +.....++ -.| .+.|++.|...+.+...+.+ ..++++
T Consensus 64 l~~~-p~~y~v~~l~Gsgt~~~ea~~~nl-~~~~~~~l~~~~G~fg--~r~-~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 138 (365)
T PLN02452 64 LLDI-PDNYEVLFLQGGASTQFAAIPLNL-CKPGDKADFVVTGSWS--KKA-AKEAKKYCKTNVIASGKDEKYTKIPSVS 138 (365)
T ss_pred HhCC-CCCceEEEEeCccHHHHHHHHHhc-CCCCCeEEEEECCHHH--HHH-HHHHHHhCCCcEEEecCCCCCCCCCChH
Confidence 9998 455777666 78899999999999 8889984 45555553 334 67788888744444322111 124554
Q ss_pred HHHHHHhhhccccCCCcceEEEEeCCCCCCCcc-CCHHHHHHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccC
Q 037063 267 KLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGAR-YSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFY 345 (588)
Q Consensus 267 ~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~-~pl~~I~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~ 345 (588)
++ + .+++...|.++|..+.||+. .|++++. +++++||+++.++ ..+++++++.+|| +|.|
T Consensus 139 ~~----~------~~~~~~~v~~~hnETstGv~~~~~~~i~-----~~~lvVDa~Ss~g--~~pidv~~~~v~~--~saq 199 (365)
T PLN02452 139 EW----E------LTPDAKFVHICANETIHGVEFKDYPDVG-----NVPLVADMSSNFL--SKPVDVSKYGVIY--AGAQ 199 (365)
T ss_pred Hc----C------CCCCCcEEEECCCCCCCcEecCcccccC-----CCeEEEECCcccc--CcccCHHHcCEEE--Eecc
Confidence 43 2 11568999999999999995 7877762 2899999999998 5677777766766 6999
Q ss_pred ccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHH
Q 037063 346 KIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADA 425 (588)
Q Consensus 346 K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~ 425 (588)
|.+| |.|+|++++|+++++++.+.... +.+ ....... .+..+||++..+ +++..+|+++.+
T Consensus 200 K~lG--P~Gl~~v~vr~~~l~~~~~~~~~---~~~-------~~~~~~~----~s~~~TP~v~~i---~~l~~aL~~l~~ 260 (365)
T PLN02452 200 KNVG--PSGVTIVIIRKDLIGNARPITPG---MLD-------YKIHAEN----DSLYNTPPCFGI---YMCGLVFEDLLA 260 (365)
T ss_pred cccC--CCCeEEEEEcHHHHhhcccCCCc---hhh-------HHHHHhc----CCccCChhHHHH---HHHHHHHHHHHH
Confidence 9999 89999999999998776543211 110 0000000 002468888886 899999999998
Q ss_pred h-CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCC-CCCCCcc-cEEEEEeecCCCCCcCHHHHHHHHHhCCc
Q 037063 426 L-GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGP-KVMFDRG-PSLAFNVFDWNGTRIDPALVQKLADRHNI 502 (588)
Q Consensus 426 ~-G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p-~~~~~rg-~iv~f~~~~~~g~~i~~~~v~~~l~~~gI 502 (588)
. |++.+.+|.++++++|++.|+++ +++ |.+ .++..|+ .+++|++.+.+ ..+.+.+.++++|+
T Consensus 261 ~gGl~~~~~r~~~~a~~l~~~l~~~---------~G~--y~~~~~~~~rs~~~vsF~~~~~~----~~~~f~~~~~~~g~ 325 (365)
T PLN02452 261 QGGLKAMEKRNIRKADLLYDAIDES---------NGF--YVCPVEKSVRSLMNVPFTLGGSE----LEAEFVKEAAKAGM 325 (365)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhC---------CCc--ccCCCChHHhCCeEEEEEcCCch----hHHHHHHHHHHCCC
Confidence 7 89999999999999999999984 344 343 2222344 58999987632 35678889999999
Q ss_pred EeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 503 SLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 503 ~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
....|... .| .+|+|+--..+.|||++|++++++|-++
T Consensus 326 ~~~~G~r~--------------------------~g--g~R~s~yna~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 326 VQLKGHRS--------------------------VG--GMRASIYNAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred cccCCccc--------------------------cC--ceEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 98777321 33 5999998888999999999999998654
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-24 Score=229.56 Aligned_cols=320 Identities=11% Similarity=0.068 Sum_probs=221.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.+.+.+.++.+++++|+++++ +++|+|+|+++..++.++.+++|++|+ +...|++. ...+..+++..|++++.++.
T Consensus 111 ~~~~~e~~~~la~l~g~~~~~--v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~-~~~~~~~~~~~G~~~~~v~~ 187 (447)
T PRK00451 111 LQAIFEYQTMICELTGMDVAN--ASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEY-REVLKTYLKGQGIEVVEVPY 187 (447)
T ss_pred HHHHHHHHHHHHHHhCCCcce--EEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHH-HHHHHHHHHhCCcEEEEecC
Confidence 566777888999999998664 999999999999998887557899965 45566653 33334566778999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEE--eCCCcCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLL--DATALGSKDMDTLGLS 333 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvv--Daa~~~~~d~~~l~l~ 333 (588)
+ ++ .++.++|+++|+ ++|++|+++++ |+||.+.|+++| ++|+++|+++++ |...... +.. ..
T Consensus 188 ~-~~-~~d~~~l~~~i~--------~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~~~g~--~~~--~~ 252 (447)
T PRK00451 188 E-DG-VTDLEALEAAVD--------DDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPVSLGL--LKP--PG 252 (447)
T ss_pred C-CC-CCCHHHHHHhcC--------CCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChHHhcc--CCC--cc
Confidence 7 45 899999999998 78999999998 889999999999 999999999998 6543221 111 12
Q ss_pred CCCCcEEEeccCcc-----CCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccc--ccc-cccccccCCCC
Q 037063 334 LFKPDFLICSFYKI-----FGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIEL--ETL-DESSQSKFPES 405 (588)
Q Consensus 334 ~~~~D~vv~S~~K~-----~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~--~~~-~~~~f~e~GT~ 405 (588)
.+++|++++|.||| +| +.|+|++++++++++.+++...|+ ..+... .....+ ..+ ...++ +.+|.
T Consensus 253 ~~~~D~~~~s~~k~~~~~~~~--Gpg~G~l~~~~~~~~~~~~~~~g~--~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~ 325 (447)
T PRK00451 253 EYGADIVVGEGQPLGIPLSFG--GPYLGFFATRKKLVRQMPGRLVGE--TVDADG--KRGFVLTLQAREQHIRR-EKATS 325 (447)
T ss_pred cCCCCEEEECCCcCCCCCCCC--CCCchHHHhhHHHHhhCCCCEeee--ecccCC--CeeeEeecccccccccc-ccccc
Confidence 34599999999996 45 338999999999988887665552 111000 000000 000 11144 55666
Q ss_pred CccchhhHHHHH--HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecC
Q 037063 406 SISGVSSKLVEC--KGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDW 483 (588)
Q Consensus 406 ~~~~~~~~~al~--~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~ 483 (588)
++.....+.++. .+++++.+.|++++.+++..++++++++|.++ ++++++.. .....+.+.+.
T Consensus 326 ~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~---------~g~~~~~~----~~~~~~~v~~~-- 390 (447)
T PRK00451 326 NICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEI---------GGVELFDG----PFFNEFVVRLP-- 390 (447)
T ss_pred cccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhc---------CCEEecCC----CeEEEEEEecC--
Confidence 665431112222 34566666789999999999999999999985 56776521 11112223321
Q ss_pred CCCCcCHHHHHHHHHhCCcEecc-c-cccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHH
Q 037063 484 NGTRIDPALVQKLADRHNISLSC-G-FLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAF 561 (588)
Q Consensus 484 ~g~~i~~~~v~~~l~~~gI~v~~-G-~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~ 561 (588)
.+...+.+.|.++||..+. + .++ .. .. +.+|+|++.++|.|||++|++.
T Consensus 391 ----~~~~~~~~~L~~~gi~~~~~~~~~~-----------------~~------~~--~~~rvs~~~~~t~e~i~~l~~~ 441 (447)
T PRK00451 391 ----KPAEEVNEALLEKGILGGYDLGRYY-----------------PE------LG--NHLLVCVTEKRTKEDIDALVAA 441 (447)
T ss_pred ----CCHHHHHHHHHhcCCCCCccccccc-----------------CC------cC--CEEEEecCCCCCHHHHHHHHHH
Confidence 2356777777788886421 1 010 00 01 2899999999999999999999
Q ss_pred HHHhh
Q 037063 562 VSRFL 566 (588)
Q Consensus 562 l~~~l 566 (588)
|++++
T Consensus 442 L~~~~ 446 (447)
T PRK00451 442 LGEVL 446 (447)
T ss_pred HHHHh
Confidence 98764
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-23 Score=199.93 Aligned_cols=327 Identities=15% Similarity=0.149 Sum_probs=243.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
-.+.+++++-+...|.... .+.+++..+++.|+..++-.+ +.|||+++ ....-.+ ..| ...+++.|++|..++.
T Consensus 49 ~qIm~~v~egikyVFkT~n-~~tf~isgsGh~g~E~al~N~-lePgd~vLv~~~G~wg--~ra-~D~~~r~ga~V~~v~~ 123 (385)
T KOG2862|consen 49 VQIMDEVLEGIKYVFKTAN-AQTFVISGSGHSGWEAALVNL-LEPGDNVLVVSTGTWG--QRA-ADCARRYGAEVDVVEA 123 (385)
T ss_pred HHHHHHHHHHHHHHhccCC-CceEEEecCCcchHHHHHHhh-cCCCCeEEEEEechHH--HHH-HHHHHhhCceeeEEec
Confidence 5788899999999999864 367999999999999999999 99999965 3444442 344 6788999999999998
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH--HHHHHcCcEEEEeCCCcCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM--SVAAEKGWHVLLDATALGSKDMDTLGLSL 334 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I--~~a~~~g~~vvvDaa~~~~~d~~~l~l~~ 334 (588)
++ ...+..+++.++|.+ .++++|+++|..+.||+..|+.++ ++||+|+++++||++++++ ..++-+++
T Consensus 124 ~~-G~~~~le~i~~~lsq-------h~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlg--gt~F~mDe 193 (385)
T KOG2862|consen 124 DI-GQAVPLEEITEKLSQ-------HKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLG--GTEFEMDE 193 (385)
T ss_pred Cc-ccCccHHHHHHHHHh-------cCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcC--Cccceehh
Confidence 84 456899999999984 689999999999999999996665 9999999999999999887 56677777
Q ss_pred CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCC-CceEeeecCCCcccccccccccccccCCCCCccchhhH
Q 037063 335 FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSV-STIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSK 413 (588)
Q Consensus 335 ~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~-~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~ 413 (588)
|++|+.....+|.+|. |.|++.+..++...++++....+- ....+.. ..+.++-.+.. ++. ..-|+++..+
T Consensus 194 wgVDvaytgSQKaL~a-P~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~-~~~~~wgc~~e--~~~-yhhT~pv~ll--- 265 (385)
T KOG2862|consen 194 WGVDVAYTGSQKALGA-PAGLSIISFSDKALEAIRDRKTKPVSFYFDIL-RLGNFWGCDGE--PRA-YHHTPPVQLL--- 265 (385)
T ss_pred hcccEEEecchhhcCC-CCCcceeecCHHHHHHHhhccCCceEEEEeHH-hhcchhccCCc--ccc-cccCCcHHHH---
Confidence 8899999999999986 999999999998888776554321 0111100 00001111111 122 3457776664
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE-EEEeecCCCCCcCHHH
Q 037063 414 LVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL-AFNVFDWNGTRIDPAL 492 (588)
Q Consensus 414 ~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv-~f~~~~~~g~~i~~~~ 492 (588)
+++.+||+++.+.|++++.+|.+++++|++..|.++ |...+.+ + ++.|.+.+ +..++. | +|..+
T Consensus 266 y~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~-------GLq~fv~---~-e~~rlptvttv~vp~--g--vDw~d 330 (385)
T KOG2862|consen 266 YSLRAALALIAEEGLENSWRRHREMSKWLKLSLEAL-------GLQLFVV---D-EELRLPTVTTVKVPY--G--VDWKD 330 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------Cccceec---C-hhhccCcceeeecCC--C--CCHHH
Confidence 999999999999999999999999999999999997 4443322 1 12454433 344432 1 56666
Q ss_pred HH-HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec-CCCCCHHHHHHHHHHHHHhhhh
Q 037063 493 VQ-KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL-GCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 493 v~-~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl-g~~~t~eDv~~li~~l~~~l~~ 568 (588)
|. ++.++.++.+..|.- ..+-.++||.+ |.-.|.|-|++.++.|+..+..
T Consensus 331 Vv~~~~~~~~vei~gglg--------------------------~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 331 VVAYAMSHYVVEIGGGLG--------------------------PTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred HHHHHHHhcCEEeccccC--------------------------CCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence 55 555666888876621 02222899996 7778999999999998876654
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=217.63 Aligned_cols=299 Identities=12% Similarity=0.078 Sum_probs=204.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.+...++|+.||+++|.+ + +++++|+++|++.++.++ +++||+|++ ..+|++ .... ++..+++...++
T Consensus 82 ~~~~~~le~~ia~~~g~~--~--~ii~~~~~~a~~~~~~~l-~~~gd~vi~~~~~~~s-~~~~----~~~~~~~~~~~~- 150 (393)
T TIGR01822 82 QDIHKELEAKIAAFLGTE--D--TILYASCFDANGGLFETL-LGAEDAIISDALNHAS-IIDG----VRLCKAKRYRYA- 150 (393)
T ss_pred hHHHHHHHHHHHHHhCCC--c--EEEECchHHHHHHHHHHh-CCCCCEEEEeccccHH-HHHH----HHhcCCceEEeC-
Confidence 467789999999999983 2 555578899999999999 899999765 445554 3332 233455543322
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCC-C------
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDM-D------ 328 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~-~------ 328 (588)
.+|++++++.|+.. ...+.++++|++++++|+||.+.|+++| ++|+++|+++++|+++..+... .
T Consensus 151 -----~~d~~~l~~~i~~~--~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~ 223 (393)
T TIGR01822 151 -----NNDMADLEAQLKEA--RAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHE 223 (393)
T ss_pred -----CCCHHHHHHHHHhh--hhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHH
Confidence 36889999998720 0111378999999999999999999999 9999999999999998665210 0
Q ss_pred CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 329 TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
..++. .++|++++|+||++|. + ..|+++.++++++.+.+.... . .| .+|.+..
T Consensus 224 ~~~~~-~~~di~~~s~sK~l~g-~-r~G~~~~~~~~~~~l~~~~~~---~-------------------~~--~~~~~~~ 276 (393)
T TIGR01822 224 LCGVM-GRVDIITGTLGKALGG-A-SGGFTTARKEVVELLRQRSRP---Y-------------------LF--SNSLPPA 276 (393)
T ss_pred hcCCC-CCCeEEEEEChHHhhC-C-CcEEEEeCHHHHHHHHHhCcc---c-------------------ee--cCCCCHH
Confidence 12222 2489999999998772 4 569999998887766542111 0 01 2222222
Q ss_pred chhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 409 GVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
.+ ++..++++.++. ++.+.++++++++++.+.|.++ ++.+..+ .++++.+.+.+. .
T Consensus 277 ~~---~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~-----~~~~~~i~~~~~----~ 332 (393)
T TIGR01822 277 VV---GASIKVLEMLEA--SNELRDRLWANTRYFRERMEAA----------GFDIKPA-----DHPIIPVMLYDA----V 332 (393)
T ss_pred HH---HHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc----------CCCCCCC-----CCCEEEEEeCCH----H
Confidence 22 345567776643 5778899999999999999874 2333322 245666655431 2
Q ss_pred CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 489 DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 489 ~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+...+.+.|.++||.+. +... +. . ..+...||+|+++++|.+||+++++.|++.+++
T Consensus 333 ~~~~l~~~L~~~gI~v~-~~~~-~~-------------~--------~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~ 389 (393)
T TIGR01822 333 LAQRFARRLLEEGIYVT-GFFY-PV-------------V--------PKGQARIRVQISAAHTEEQLDRAVEAFTRIGRE 389 (393)
T ss_pred HHHHHHHHHHHCCeeEe-eeCC-CC-------------C--------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 34556666667799987 4221 10 0 012237999999999999999999999987653
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-23 Score=238.55 Aligned_cols=302 Identities=18% Similarity=0.135 Sum_probs=223.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCC--CeE-EEcCCCchhHHHHHHHHHHhcCCEEEEE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSN--PRL-LTVYDHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~g--d~l-l~~~e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
-+.+.+.+..++++.|+++.+ +.++.++|++.+.++.+++++++ ++| ++..+|+++...| ...++..|++|+.+
T Consensus 120 Leal~~~Qt~la~LtG~~~an--aSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~-~t~a~~~G~ev~~~ 196 (954)
T PRK05367 120 LEALLNFQTMVADLTGLEIAN--ASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVL-RTRAEPLGIEVVVG 196 (954)
T ss_pred HHHHHHHHHHHHHHHCCChhh--ccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHH-HHHHHhCCCEEEEe
Confidence 567789999999999998776 99999999999999999888875 775 5678898866655 67888999999999
Q ss_pred eccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCC---cCCCCCCCC
Q 037063 255 EFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATA---LGSKDMDTL 330 (588)
Q Consensus 255 ~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~---~~~~d~~~l 330 (588)
+.+ .+ ++ + +++ ..++.+..|.+|.+.|+++| ++||++|++++||+.+ .+..++..+
T Consensus 197 ~~~-~d--~~--------~--------~~~-~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~ 256 (954)
T PRK05367 197 DAA-KA--LD--------H--------DDV-FGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEM 256 (954)
T ss_pred cCc-cC--CC--------c--------ccE-EEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhc
Confidence 875 21 11 2 334 34566667899999999999 9999999999999954 334444455
Q ss_pred CCCCCCCcEEEeccCcc-----CCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcc-ccccccc-ccccccCC
Q 037063 331 GLSLFKPDFLICSFYKI-----FGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEI-IELETLD-ESSQSKFP 403 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~-----~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~-~~~~~~~-~~~f~e~G 403 (588)
| +||+++++||| ||. | |.|++++++++.+.+++...|+ .... .....+ ..++.++ +.|| |.|
T Consensus 257 G-----aDi~vgs~qkfg~P~g~GG-P-~aGflavr~~~~r~lpgrivG~--s~d~-~g~~~~~lalqtReqhiRr-eka 325 (954)
T PRK05367 257 G-----ADIAVGSAQRFGVPMGFGG-P-HAAYFAVRDAYKRSMPGRIVGV--SVDA-AGNPALRLALQTREQHIRR-EKA 325 (954)
T ss_pred C-----CCEEEeeCcccCCCCCCCC-C-CEEEEEECHHHHhhCCCCeeee--eccc-CCCcccccccccccccccc-ccc
Confidence 5 99999999998 662 4 6999999999888888776552 1110 000000 0011221 2377 899
Q ss_pred CCCccchhhHHHHHHH--HHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEee
Q 037063 404 ESSISGVSSKLVECKG--LDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVF 481 (588)
Q Consensus 404 T~~~~~~~~~~al~~a--L~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~ 481 (588)
|.|+.....+.++.++ +.++...|+++|.+|+..|++++.++|.+. ++++..+ ....+++|.+.
T Consensus 326 TsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~----------G~~~~~~----~~f~~~~~~~~ 391 (954)
T PRK05367 326 TSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRAL----------GLEVVHD----SFFDTLTVEVG 391 (954)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc----------CcccCCC----CCCCeEEEeCC
Confidence 9999875333333333 255677799999999999999999999763 4555433 23357777753
Q ss_pred cCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHH
Q 037063 482 DWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAF 561 (588)
Q Consensus 482 ~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~ 561 (588)
.++..+.+.|.++||.++.- ....||+|++.++|.+||++|++.
T Consensus 392 ------~~~~~i~~~l~~~gi~~~~~------------------------------~~~~l~is~~e~~t~~did~l~~~ 435 (954)
T PRK05367 392 ------GDAAAVLARALAAGINLRRV------------------------------DDDHVGISLDETTTREDLAALLAV 435 (954)
T ss_pred ------CCHHHHHHHHHHCCceeccc------------------------------cCCEEEEEecccCCHHHHHHHHHH
Confidence 24778888888899987421 112799999999999999999999
Q ss_pred HH
Q 037063 562 VS 563 (588)
Q Consensus 562 l~ 563 (588)
+.
T Consensus 436 l~ 437 (954)
T PRK05367 436 FG 437 (954)
T ss_pred Hc
Confidence 97
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-23 Score=219.12 Aligned_cols=292 Identities=14% Similarity=0.103 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....++++++++++|++ + ++|++|+++|+.+++.++ .++|+.++ ....|.+ .. ..++..|+++..++.
T Consensus 99 ~~~~~le~~la~~~g~~--~--~~~~~sG~~An~~~l~~l-~~~g~~v~~~~~~h~s-~~----~~~~~~g~~~~~~~~- 167 (407)
T PRK07179 99 SPKPQFEKKLAAFTGFE--S--CLLCQSGWAANVGLLQTI-ADPNTPVYIDFFAHMS-LW----EGVRAAGAQAHPFRH- 167 (407)
T ss_pred hHHHHHHHHHHHHhCCC--c--EEEECCHHHHHHHHHHHh-CCCCCEEEEECCcCHH-HH----HHHHHCCCeEEEecC-
Confidence 45678889999999984 2 788999999999999998 78899865 5555654 22 233456877655432
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC---C----CCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK---D----MDT 329 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~---d----~~~ 329 (588)
.|+++|+++|++ .++++|++.+++|+||.+.|+++| ++|+++|+++|+|+++..+. + +..
T Consensus 168 -----~d~~~l~~~l~~-------~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~ 235 (407)
T PRK07179 168 -----NDVDHLRRQIER-------HGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAE 235 (407)
T ss_pred -----CCHHHHHHHHHh-------cCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHh
Confidence 488999999971 257899999999999999999999 99999999999999987652 1 113
Q ss_pred CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 330 LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 330 l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
+++. .++|+++.|++|.+| + ++|++++++++++.+...... + . ..+|.+...
T Consensus 236 ~~~~-~~vdi~~~S~sK~~g--~-~~G~l~~~~~~~~~~~~~~~~--~--------------------~--~~~t~~~~~ 287 (407)
T PRK07179 236 LGLT-SRVHFITASLAKAFA--G-RAGIITCPRELAEYVPFVSYP--A--------------------I--FSSTLLPHE 287 (407)
T ss_pred cCCC-CCCCEEEeechHhhh--c-cCeEEEeCHHHHHHHHHhCcC--e--------------------e--eCCCCCHHH
Confidence 3332 247999999999998 4 489999988776655322110 0 1 133444333
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcC
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRID 489 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~ 489 (588)
+ +++.++++.+... +...++++++++++++.|.++ ++++++ .++++.+.+.+. .+
T Consensus 288 ~---aa~~aal~~~~~~--~~~~~~l~~~~~~l~~~L~~~----------g~~v~~------~~~i~~l~~~~~----~~ 342 (407)
T PRK07179 288 I---AGLEATLEVIESA--DDRRARLHANARFLREGLSEL----------GYNIRS------ESQIIALETGSE----RN 342 (407)
T ss_pred H---HHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc----------CCCCCC------CCCEEEEEeCCH----HH
Confidence 3 4566778877553 567889999999999999885 233332 357877775431 12
Q ss_pred HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 490 PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 490 ~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
...+.+.|.++||.++ .+|.+... .+...||+|++.++|.|||++++++|++++++.
T Consensus 343 ~~~~~~~L~~~GI~~~--~~~~p~~~---------------------~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 343 TEVLRDALEERNVFGA--VFCAPATP---------------------KNRNLIRLSLNADLTASDLDRVLEVCREARDEV 399 (407)
T ss_pred HHHHHHHHHHCCceEe--eecCCCCC---------------------CCCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence 4567778888999854 34533210 122389999999999999999999999987763
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=213.05 Aligned_cols=318 Identities=11% Similarity=0.002 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....++++.+++++|.+ + +++++|+|+|+.+++.++.+++||+|++ ...|++. ...+...|++++.++++
T Consensus 18 ~~~~~~~~~la~~~~~~--~--~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~-----~~~~~~~g~~~~~~~~~ 88 (352)
T cd00616 18 PKVREFEKAFAEYLGVK--Y--AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVAT-----ANAILLLGATPVFVDID 88 (352)
T ss_pred HHHHHHHHHHHHHhCCC--e--EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHH-----HHHHHHcCCeEEEEecC
Confidence 45679999999999973 2 8889999999999999987789999664 5556542 23345679999999997
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFK 336 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~ 336 (588)
..++.+|+++++++++ +++++|++++ ++|...|+++| ++|+++|+++++|++|..+.....-.+.. .
T Consensus 89 ~~~~~~d~~~l~~~i~--------~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~-~ 156 (352)
T cd00616 89 PDTYNIDPELIEAAIT--------PRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGT-F 156 (352)
T ss_pred CCcCCcCHHHHHHhcC--------cCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEccc-C
Confidence 4378899999999887 6889998875 59999999999 99999999999999998762111100111 1
Q ss_pred CcEEEeccC--ccCCCCCCceEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc-chhh
Q 037063 337 PDFLICSFY--KIFGENPSGFGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS-GVSS 412 (588)
Q Consensus 337 ~D~vv~S~~--K~~G~~P~G~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~-~~~~ 412 (588)
.|+.++|+| |+++. +. .|+++.++ ++.+++++...++ ...... +| +..+..+. .+
T Consensus 157 ~d~~~~S~~~~K~~~~-~~-gg~~~~~~~~~~~~~~~~~~~~-~~~~~~---------------~~-~~~~~~~~~~~-- 215 (352)
T cd00616 157 GDAGAFSFHPTKNLTT-GE-GGAVVTNDEELAERARLLRNHG-RDRDRF---------------KY-EHEILGYNYRL-- 215 (352)
T ss_pred cceeEEcCCCCCCCcc-cC-ceEEEECCHHHHHHHHHHHHcC-CCCCCC---------------cc-ccceeeeccCc--
Confidence 588999987 98863 33 46677765 5666555433221 110000 01 11111100 11
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCC-CCcccEEEEEeecCCCCCcCHH
Q 037063 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVM-FDRGPSLAFNVFDWNGTRIDPA 491 (588)
Q Consensus 413 ~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~-~~rg~iv~f~~~~~~g~~i~~~ 491 (588)
..+..++......+++.+.++.+++++++++.|.++ ++++++.+... ....++++|.+.+..+ .+..
T Consensus 216 -~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 283 (352)
T cd00616 216 -SEIQAAIGLAQLEKLDEIIARRREIAERYKELLADL---------PGIRLPDVPPGVKHSYHLYVIRLDPEAG--ESRD 283 (352)
T ss_pred -CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCC---------CCccCCCCCCCCceeeEEEEEEECCcCC--CCHH
Confidence 111222222222246888899999999999999874 67888765432 1345688888764211 5688
Q ss_pred HHHHHHHhCCcEeccccccCcccccchHH----------HHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHH
Q 037063 492 LVQKLADRHNISLSCGFLQNIFFSGEYEQ----------ERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAF 561 (588)
Q Consensus 492 ~v~~~l~~~gI~v~~G~~c~~~~~~~~~~----------~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~ 561 (588)
.+.+.|.++||.++ .+|.+........ ..+..+. ...||++++.++|.|||+++++.
T Consensus 284 ~v~~~L~~~gI~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-----------~~~l~l~~~~~~t~~di~~i~~~ 350 (352)
T cd00616 284 ELIEALKEAGIETR--VHYPPLHHQPPYKKLLGYPPGDLPNAEDLA-----------ERVLSLPLHPSLTEEEIDRVIEA 350 (352)
T ss_pred HHHHHHHHCCCCee--eecCccccCHhhhhccCCCcCCChHHHHHH-----------hCeEEccCCCCCCHHHHHHHHHH
Confidence 89999999999665 4554432211000 0011111 13899999999999999999998
Q ss_pred HH
Q 037063 562 VS 563 (588)
Q Consensus 562 l~ 563 (588)
|+
T Consensus 351 l~ 352 (352)
T cd00616 351 LR 352 (352)
T ss_pred hC
Confidence 63
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-22 Score=211.71 Aligned_cols=298 Identities=14% Similarity=0.145 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCC-
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWP- 259 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~- 259 (588)
..++|+.+++++|+++++ |++|+|+|+|+.+++.++ ..+||+|++....+. +....++..|++++.++++.+
T Consensus 68 ~~~lr~~ia~~l~~~~~~--v~~~~g~t~al~~~~~~~-~~~gd~vl~~~p~y~----~~~~~~~~~g~~~~~v~~~~~~ 140 (380)
T PRK06225 68 FPELRELILKDLGLDDDE--ALITAGATESLYLVMRAF-LSPGDNAVTPDPGYL----IIDNFASRFGAEVIEVPIYSEE 140 (380)
T ss_pred hHHHHHHHHHhcCCCCCc--EEEeCCHHHHHHHHHHHh-cCCCCEEEEcCCCCc----chHHHHHHhCceEEeecccccc
Confidence 458999999999998765 999999999999999998 789998765443322 223556778999999987422
Q ss_pred -CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCc--C-CC-CCCCC
Q 037063 260 -NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATAL--G-SK-DMDTL 330 (588)
Q Consensus 260 -~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~--~-~~-d~~~l 330 (588)
++.++++++++.++ ++++++++.+++|+||..++ +++| ++|+++|+++|+|++.. . +. ....+
T Consensus 141 ~~~~~d~~~l~~~~~--------~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~ 212 (380)
T PRK06225 141 CNYKLTPELVKENMD--------ENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEY 212 (380)
T ss_pred CCccCCHHHHHhhcC--------CCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhc
Confidence 35799999999887 67899999999999999998 5556 88999999999999842 1 10 01111
Q ss_pred CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 331 GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
+ ....+++.|++|++|.+..++|++++++++++.+.+...+ ..|+..+.+
T Consensus 213 ~---~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~~~~~~~~~~--------------------------~~~~~~~~~- 262 (380)
T PRK06225 213 A---PEHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIVIN--------------------------DLGTNVIAQ- 262 (380)
T ss_pred C---CCCEEEEeechhhcCCccceeEEEecCHHHHHHHHHHHhc--------------------------ccCCCHHHH-
Confidence 1 1245778899999984223479999998887766543211 011111111
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEe-CCCCCCCcccEEEEEeecCCCCCcC
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIY-GPKVMFDRGPSLAFNVFDWNGTRID 489 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~-~p~~~~~rg~iv~f~~~~~~g~~i~ 489 (588)
++...+|+..... ++.+.+..+...+++.+.|.++ +++.+. .| ..+.++.+.+.+.. ++
T Consensus 263 ---~~a~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~~~----~~g~~~~~~~~~~~---~~ 322 (380)
T PRK06225 263 ---EAAIAGLKVKDEW-IDRIRRTTFKNQKLIKEAVDEI---------EGVFLPVYP----SHGNMMVIDISEAG---ID 322 (380)
T ss_pred ---HHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHhC---------cCCccccCC----CCCeEEEEEccccc---CC
Confidence 2222344322222 3445555556667777777764 222211 12 23455555554311 45
Q ss_pred HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 490 PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 490 ~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
...+.+.|.++||.++.|..|.+. .|..++|+|++. +.||++++++.|+++++.
T Consensus 323 ~~~l~~~l~~~gi~v~~g~~~~~~-----------------------~~~~~iR~s~~~--~~e~l~~~~~~l~~~~~~ 376 (380)
T PRK06225 323 PEDLVEYLLERKIFVRQGTYTSKR-----------------------FGDRYIRVSFSI--PREQVEVFCEEFPDVVET 376 (380)
T ss_pred HHHHHHHHHHCCEEEcCCcccCcC-----------------------CCCceEEEEeCC--CHHHHHHHHHHHHHHHHH
Confidence 777887777899999988655210 223389999874 789999999999998764
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-22 Score=207.98 Aligned_cols=296 Identities=13% Similarity=0.076 Sum_probs=203.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.+.++++++.+++++|++ + .++++++|+++.+++.++ +++||+|++. ..|++ . ...++..|++++.++.
T Consensus 45 ~~~~~~l~~~la~~~~~~--~--~iv~~sg~~a~~~~~~~~-~~~gd~Vl~~~~~~~~-~----~~~~~~~g~~~~~~~~ 114 (349)
T cd06454 45 SDLHEELEEELAEFHGKE--A--ALVFSSGYAANDGVLSTL-AGKGDLIISDSLNHAS-I----IDGIRLSGAKKRIFKH 114 (349)
T ss_pred chHHHHHHHHHHHHhCCC--C--EEEeccHHHHHHHHHHHh-cCCCCEEEEehhhhHH-H----HHHHHHcCCceEEecC
Confidence 567789999999999984 2 455556677877777777 7899997654 44443 2 2345667999887752
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC-CCC-----C
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK-DMD-----T 329 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~-d~~-----~ 329 (588)
++.+++++++++. ....++++|++++++|+||...|+++| ++|+++|+++|+|+++..+. ... .
T Consensus 115 ------~~~~~le~~i~~~---~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~ 185 (349)
T cd06454 115 ------NDMEDLEKLLREA---RRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEE 185 (349)
T ss_pred ------CCHHHHHHHHHHh---hccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhh
Confidence 4778899888721 112467899999999999999999999 99999999999999986541 000 1
Q ss_pred CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 330 LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 330 l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
++.....+|+++.|+||.+| +.| |+++.++++++.+...... +...++.+...
T Consensus 186 ~~~~~~~~~i~~~s~sK~~~--~~g-G~i~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~ 238 (349)
T cd06454 186 FGGLTDDVDIIMGTLGKAFG--AVG-GYIAGSKELIDYLRSYARG------------------------FIFSTSLPPAV 238 (349)
T ss_pred hccccccCcEEEeechhhhc--ccC-CEEECCHHHHHHHHHhchh------------------------hhccCCCCHHH
Confidence 22233458999999999999 555 8888887776655432110 00122333333
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcC
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRID 489 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~ 489 (588)
+ +++.++|+++.+ .+.+.++...+++++.+.|.++ +++++++. .+.++.+.+.+ + .+
T Consensus 239 ~---~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~----------g~~~~~~~----~~~~~~~~~~~--~--~~ 295 (349)
T cd06454 239 A---AAALAALEVLQG--GPERRERLQENVRYLRRGLKEL----------GFPVGGSP----SHIIPPLIGDD--P--AK 295 (349)
T ss_pred H---HHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhc----------CCcccCCC----CCcEEEEeCCC--h--HH
Confidence 2 566778887766 3677899999999999999875 23344431 23344444331 1 33
Q ss_pred HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 490 PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 490 ~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
...+.+.|.++||.++.+.... . ..+...||++++.++|.+||+++++.|+++
T Consensus 296 ~~~~~~~L~~~gI~~~~~~~~~----------------~-------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 296 AVAFSDALLERGIYVQAIRYPT----------------V-------PRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred HHHHHHHHHhCCceEEEecCCc----------------c-------CCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 5667777777799987642110 0 011238999999999999999999998764
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-22 Score=217.05 Aligned_cols=321 Identities=12% Similarity=0.058 Sum_probs=211.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHH--HHhCCCCCCC----eEE-EcCCCchhHHHHHHHHHHhcCCE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLL--AESYPFYSNP----RLL-TVYDHENEAAALMIESSKKRGAR 250 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv--~~s~~~~~gd----~ll-~~~e~~s~~~~~~~~~a~~~G~~ 250 (588)
.+++.++++.+++++|++. ..+.-++|+++.+..+ +..+..++|| +|+ +...|++ .. ..++..|++
T Consensus 112 lel~~~~~~~la~l~G~~~--~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~-~~----~~~~~~G~~ 184 (481)
T PRK04366 112 LELMYELQEWLKEITGMDA--VTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGT-NP----ASAAMAGFK 184 (481)
T ss_pred HHHHHHHHHHHHHHhCCCc--eEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHh-HH----HHHHHcCCE
Confidence 5788999999999999962 2243344555444422 3333356665 665 4556654 22 235678999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCcc-CCHHHH-HHHHHcCcEEEEeCCCcCCCCCC
Q 037063 251 VSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGAR-YSYMWM-SVAAEKGWHVLLDATALGSKDMD 328 (588)
Q Consensus 251 v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~-~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~ 328 (588)
++.++++ .++.+|.++|+++++ ++|++|++++++ +||.. .|+++| ++||++|++++||+++.++. +.
T Consensus 185 vv~v~~~-~~~~~D~e~L~~~i~--------~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~-~g 253 (481)
T PRK04366 185 VVEIPSN-EDGLVDLEALKAAVG--------EDTAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAI-LG 253 (481)
T ss_pred EEEeecC-CCCCcCHHHHHhhcc--------cCCeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhh-cc
Confidence 9999997 678899999999998 789999999866 89987 589999 99999999999999987541 01
Q ss_pred CCCCCCCCCcEEEeccCccCCC----CCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc-cccccccCC
Q 037063 329 TLGLSLFKPDFLICSFYKIFGE----NPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL-DESSQSKFP 403 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~G~----~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~-~~~~f~e~G 403 (588)
.++...+++|++++++||+||. ++.|+|++++++++.+.+.+...+..|. .+.. .++.. ..+|+ +.+
T Consensus 254 ~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~-~~~l------~~~r~~~i~r~-~a~ 325 (481)
T PRK04366 254 KARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGD-RYRL------DYDRPKSIGRV-RAF 325 (481)
T ss_pred cCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCC-ceee------cccccccCCCc-ccc
Confidence 1233455699999999998763 1345789999999888776554321011 1100 11100 11244 555
Q ss_pred CCCccchhhHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEe
Q 037063 404 ESSISGVSSKLVECKGLDHADALG---LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNV 480 (588)
Q Consensus 404 T~~~~~~~~~~al~~aL~~l~~~G---~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~ 480 (588)
|.+. .++..+..++..+| +.++.++...++++++++|.++ ..+. + +. ..-..+.|..
T Consensus 326 t~~~------l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~---------~~~~-~-~~---~~~~~~~~~~ 385 (481)
T PRK04366 326 YGNF------GVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI---------YDLP-Y-DR---PCMHEFVLSG 385 (481)
T ss_pred cCch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---------Cccc-C-CC---CeeEEEEEEC
Confidence 5443 23446777777666 5577788889999999999884 1111 1 10 1111222221
Q ss_pred e--cCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHH
Q 037063 481 F--DWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRL 558 (588)
Q Consensus 481 ~--~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~l 558 (588)
. ..+| ++..++.+.|.++||.++.-.. + . .....+|+|++.++|.+|||+|
T Consensus 386 ~~~~~~g--~~~~~v~~~L~~~Gi~~~~~~~--p---------------~--------~~~~~l~is~~e~~t~edid~l 438 (481)
T PRK04366 386 KKLKETG--VRTLDIAKRLLDYGFHPPTIYF--P---------------L--------IVPEALMIEPTETESKETLDAF 438 (481)
T ss_pred ccccccC--CCHHHHHHHHHHCCccCCcccc--c---------------c--------ccCCeEEEcccCCCCHHHHHHH
Confidence 1 1112 4678888888999998652110 0 0 1112899999999999999999
Q ss_pred HHHHHHhhhhhhc
Q 037063 559 WAFVSRFLDADFV 571 (588)
Q Consensus 559 i~~l~~~l~~~~~ 571 (588)
++.|+++.++..-
T Consensus 439 ~~~l~~i~~~~~~ 451 (481)
T PRK04366 439 IAAMKQIAEEAKE 451 (481)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998766543
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-23 Score=216.24 Aligned_cols=315 Identities=13% Similarity=0.116 Sum_probs=197.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+++++++++++|++ + ++++++++.|+.+++. + +++||+|++ ...|.+ ....+...+++.|+++++++.
T Consensus 46 ~p~~~~le~~la~l~g~~---~-~l~~~sG~~al~~~l~-l-l~~Gd~Vl~~~~~y~~-~~~~~~~~~~~~G~~v~~vd~ 118 (378)
T TIGR01329 46 NPTRTALESLLAKLDKAD---R-AFAFSSGMAALDVITR-L-LNNGDEIIAGDDLYGG-TDRLLTQVVPRSGVVVVHVDT 118 (378)
T ss_pred ChHHHHHHHHHHHHhCCC---c-EEEECCHHHHHHHHHH-H-hCCCCEEEEcCCCchH-HHHHHHHHHHHcCcEEEEeCC
Confidence 445789999999999983 2 5555666779998776 5 799999765 456654 333335667788999999986
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
. |+++++++++ +++++|++++++|++|.+.|+++| ++||++|+++++|+++..+....+++ +
T Consensus 119 ~------d~~~le~~i~--------~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l~---~ 181 (378)
T TIGR01329 119 T------DLDKVKAALG--------PKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPLE---L 181 (378)
T ss_pred C------CHHHHHHhcC--------cCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChhh---c
Confidence 3 7789998887 789999999999999999999999 99999999999999987774334443 3
Q ss_pred CCcEEEeccCccCCCCCCc--eEEEEEeCcch-hcccCCCC-CCCceEeeecCCCcccccccccccccccCCCCCccchh
Q 037063 336 KPDFLICSFYKIFGENPSG--FGCLFVKKSSA-SVLSGSTS-SVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVS 411 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G--~G~L~v~~~~~-~~l~~~~~-g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~ 411 (588)
++|++++|++|+++. |.+ .|+++++++.+ +++.+... +| +.. .++..
T Consensus 182 g~Di~v~S~tK~l~G-~~~~~~G~v~~~~~~~~~~~~~~~~~~G-~~~-------------------------~~~~a-- 232 (378)
T TIGR01329 182 GADIVYHSATKFLAG-HSDVMAGVLAVKGEEIAKKVYFLQNSTG-SGL-------------------------APFDC-- 232 (378)
T ss_pred CCcEEEEecceeccC-CccceeEEEEeCcHHHHHHHHHHHHhcC-CcC-------------------------CHHHH--
Confidence 589999999996652 666 89998876543 44543321 11 110 00000
Q ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH--HHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcC
Q 037063 412 SKLVECKGLDHADALGLILISNRARYLINWLANA--LMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRID 489 (588)
Q Consensus 412 ~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~--L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~ 489 (588)
..+..+++.+... +++..+....+++||.+. +.+..||.-+ ..|..++++... ...+++++|++.+ ..
T Consensus 233 --~l~~~~l~tl~~R-~e~~~~na~~la~~L~~~~~v~~v~~p~l~-~~p~~~l~~~~~-~g~~~~~sf~~~~-----~~ 302 (378)
T TIGR01329 233 --WLLLRGIKTLAIR-IEKQQENARAIAMFLSTHPRVKKVRYAGLP-SHPGFHLHFSQA-KGAGSVLSFETGS-----VA 302 (378)
T ss_pred --HHHHccCCCHHHH-HHHHHHHHHHHHHHHHhCCCccEEECCCCC-CCccHHHHHHhC-CCcceEEEEEECC-----HH
Confidence 1111233322221 344444444445544321 1111121111 123333333222 2467999999943 22
Q ss_pred -HHHHHHHHHhCCcEeccccc----cCcccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCCCCCHHHHHHHHHHH
Q 037063 490 -PALVQKLADRHNISLSCGFL----QNIFFSGEYEQERVRVLETRSGTNETRSGV--SVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 490 -~~~v~~~l~~~gI~v~~G~~----c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~~t~eDv~~li~~l 562 (588)
...+...|+..+|.++.|.. |+|.....+. ....... ..|+ +.||+|+|. ||++.|++-|
T Consensus 303 ~~~~~~~~L~~~~i~~s~G~~~sl~~~p~~~~~~~-~~~~~~~--------~~gi~~~liR~svGl----E~~~dl~~dl 369 (378)
T TIGR01329 303 LSKRLVEATKLFSITVSFGSVNSLISMPCFMSHAS-IPAEVRE--------ERGLPEDLVRLSVGI----EDVDDLISDL 369 (378)
T ss_pred HHHHHHHhCcCcccccCCCCCCceeeCCCcccccc-CCHHHHH--------hcCCCCCeEEEEecc----CCHHHHHHHH
Confidence 44566667777888888742 2222111110 0000011 1343 399999997 8899999998
Q ss_pred HHhhhh
Q 037063 563 SRFLDA 568 (588)
Q Consensus 563 ~~~l~~ 568 (588)
.+.|++
T Consensus 370 ~~al~~ 375 (378)
T TIGR01329 370 DIAFVT 375 (378)
T ss_pred HHHHHh
Confidence 887764
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=214.59 Aligned_cols=317 Identities=14% Similarity=0.090 Sum_probs=197.9
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEE
Q 037063 176 EESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 176 ~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
......+++++++++++|++ +.+++ ++++.|+.+++. + +++||+|+ +...|+++...+ ...+++.|++++++
T Consensus 51 ~~~p~~~~le~~lA~l~g~~---~~v~~-~sG~~ai~~~l~-~-l~~Gd~Vlv~~~~y~~~~~~~-~~~~~~~G~~v~~v 123 (390)
T PRK08064 51 SGNPTREALEDIIAELEGGT---KGFAF-ASGMAAISTAFL-L-LSKGDHVLISEDVYGGTYRMI-TEVLSRFGIEHTFV 123 (390)
T ss_pred CCChhHHHHHHHHHHHhCCC---CeEEE-CCHHHHHHHHHH-H-hCCCCEEEEccCccchHHHHH-HHHHHHcCCEEEEE
Confidence 33566789999999999985 23555 555778887776 5 78999965 556676544433 56677889999999
Q ss_pred eccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCC
Q 037063 255 EFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLS 333 (588)
Q Consensus 255 ~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~ 333 (588)
+.+ |.++++++++ ++|++|++++++|+||.+.|+++| ++|+++|+++++|+++..+....+++
T Consensus 124 ~~~------d~~~l~~~l~--------~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~~-- 187 (390)
T PRK08064 124 DMT------NLEEVAQNIK--------PNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLD-- 187 (390)
T ss_pred CCC------CHHHHHHhcC--------CCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCchh--
Confidence 863 6788988887 789999999999999999999999 99999999999999977763223332
Q ss_pred CCCCcEEEeccCccCCCCCCc--eEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 334 LFKPDFLICSFYKIFGENPSG--FGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 334 ~~~~D~vv~S~~K~~G~~P~G--~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
+++|+++.|+||+++. +.| .|++++++ ++++.+++...++ |.. .+....
T Consensus 188 -~g~Divv~S~tK~~~G-~~~~laG~~v~~~~~~~~~l~~~~~~~-g~~-------------------------~~~~~a 239 (390)
T PRK08064 188 -LGADVVLHSATKFLAG-HSDVLAGLAVVKDEELAQKLYFLQNSF-GAV-------------------------LGVQDC 239 (390)
T ss_pred -hCCcEEEeecceeccC-CccceeEEEEeCCHHHHHHHHHHHHhc-CCC-------------------------CCHHHH
Confidence 3489999999998763 666 58888875 4555555433211 110 000000
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH--HHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANA--LMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~--L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
..+..+++.+... +++..+....+++||.+. +.+..||.-+ +.|+.+++.. .....|++++|.+.+
T Consensus 240 ---~l~~~gl~tl~~R-~~~~~~~a~~la~~L~~~~~v~~v~yp~l~-~~p~~~~~~~-~~~g~gg~~sf~~~~------ 307 (390)
T PRK08064 240 ---WLVLRGLKTLHVR-LEHSSETANKIALYLQEHPKVQNVYYPGLQ-THLGFDIQQS-QATSAGAVLSFTLQS------ 307 (390)
T ss_pred ---HHHHcccCcHHHH-HHHHHHHHHHHHHHHhcCCCcceEECCCCC-CCccHHHHHH-hCCCcceEEEEEECC------
Confidence 1111333322211 344444444444444331 1122222110 0122222221 112467899999854
Q ss_pred CHHHHHHHHHhCCc---Eecccccc----CcccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCCCCCHHHHHHHH
Q 037063 489 DPALVQKLADRHNI---SLSCGFLQ----NIFFSGEYEQERVRVLETRSGTNETRSGV--SVVTAALGCLTNFEDTYRLW 559 (588)
Q Consensus 489 ~~~~v~~~l~~~gI---~v~~G~~c----~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~~t~eDv~~li 559 (588)
.+.+.++++..+| .++.|... .+.....+. ..... .. ..|+ +.||+|+|+++.++.|+.|.
T Consensus 308 -~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~h~~-~~~~~-~~-------~~gi~~~liR~SvGle~~~dli~dl~ 377 (390)
T PRK08064 308 -EEAVRQFVSHVKLPVFAVSLGAVESILSYPAKMSHAA-MPKEE-RD-------ERGITDGLLRLSVGLENVDDLIADFE 377 (390)
T ss_pred -HHHHHHHHHhCCcceEcccCCCCcceeECCccccccc-CCHHH-HH-------hcCCCCCeEEEEeccCCHHHHHHHHH
Confidence 3467788888888 67777322 111100000 00000 01 1333 39999999999999999999
Q ss_pred HHHHHh
Q 037063 560 AFVSRF 565 (588)
Q Consensus 560 ~~l~~~ 565 (588)
++|+++
T Consensus 378 ~Al~~~ 383 (390)
T PRK08064 378 QALSYV 383 (390)
T ss_pred HHHHhc
Confidence 998874
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=209.74 Aligned_cols=284 Identities=14% Similarity=0.136 Sum_probs=202.6
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNL 261 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~ 261 (588)
.++|+.+++++++++++ |++|+|+++++.+++.++ .++||+|++....+. .....++..|++++.++++ +++
T Consensus 57 ~~lr~~ia~~~~~~~~~--i~~~~G~~~~l~~~~~~l-~~~gd~v~~~~p~y~----~~~~~~~~~g~~~~~~~~~-~~~ 128 (346)
T TIGR01141 57 AELKQALADYYGVDPEQ--ILLGNGSDEIIELLIRAF-LEPGDAVLVPPPTYS----MYEISAKIHGAEVVKVPLD-EDG 128 (346)
T ss_pred HHHHHHHHHHhCcChHH--EEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCHH----HHHHHHHHcCCeEEEeccC-CCC
Confidence 58999999999987665 999999999999999998 789999776554433 2234567789999999987 567
Q ss_pred ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHc--CcEEEEeCCCcC-CCCCCCCC-CCCCC
Q 037063 262 RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEK--GWHVLLDATALG-SKDMDTLG-LSLFK 336 (588)
Q Consensus 262 ~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~--g~~vvvDaa~~~-~~d~~~l~-l~~~~ 336 (588)
.+|.+++++++. +++++|++++++|+||..+|++++ ++++.. |+++++|+++.. ..+-..+. +....
T Consensus 129 ~~d~~~l~~~~~--------~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~ 200 (346)
T TIGR01141 129 QLDLEDILVAID--------DKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYP 200 (346)
T ss_pred CCCHHHHHHhcC--------CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCC
Confidence 899999998876 689999999999999999999999 888876 999999999542 10001111 11122
Q ss_pred CcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHH
Q 037063 337 PDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVE 416 (588)
Q Consensus 337 ~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al 416 (588)
.++++.|++|++|.++.++|++++++++++.+++..... + .+. .+.
T Consensus 201 ~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~-~---------------------------~~~------~~~ 246 (346)
T TIGR01141 201 NLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRAPF-N---------------------------LSR------LAQ 246 (346)
T ss_pred CEEEEehhhHhhhchhhhceeeecCHHHHHHHHhccCCC-C---------------------------CCH------HHH
Confidence 457788999999743334899999888877665432110 0 010 111
Q ss_pred HHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHH
Q 037063 417 CKGLDHADAL-GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQK 495 (588)
Q Consensus 417 ~~aL~~l~~~-G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~ 495 (588)
..++..++.. .++++.++.+++++.+++.|.++ ++++++.+ .+.++.+.+.+ +.+.+.+
T Consensus 247 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~---------~g~~~~~~-----~g~~~~~~~~~------~~~~~~~ 306 (346)
T TIGR01141 247 AAAIAALRDDDFIEKTVEEINAERERLYDGLKKL---------PGLEVYPS-----DANFVLIRFPR------DADALFE 306 (346)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCEECCC-----cCCEEEEecCC------CHHHHHH
Confidence 1223333222 26778888888999999999874 45665432 35677777653 3567777
Q ss_pred HHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 496 LADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 496 ~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
.|.++||.++.|.... . . .+.+|+|++ +.+|++++++.|+
T Consensus 307 ~L~~~gI~v~~g~~f~----------------~--------~-~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 307 ALLEKGIIVRDLNSYP----------------G--------L-PNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred HHHHCCeEEEeCCCcC----------------C--------C-CCeEEEecC---CHHHHHHHHHHhC
Confidence 7888999999874320 0 1 128999977 7999999998863
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=208.11 Aligned_cols=159 Identities=14% Similarity=0.106 Sum_probs=132.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
...+++++++++++.|+. + .++|+|+|+|+++++.++ +++||+|+ +..+|.+ ....+...+++.|++++++++
T Consensus 63 ~p~~~~le~~lA~l~g~~---~-av~~sSGt~Al~~al~~l-l~~Gd~Vi~~~~~y~~-t~~~~~~~l~~~Gi~v~~vd~ 136 (433)
T PRK08134 63 NPTVAVLEERVAALEGGV---G-AIATASGQAALHLAIATL-MGAGSHIVASSALYGG-SHNLLHYTLRRFGIETTFVKP 136 (433)
T ss_pred ChHHHHHHHHHHHHhCCC---c-EEEeCCHHHHHHHHHHHH-hCCCCEEEEeCCccHH-HHHHHHHHHhhCCeEEEEECC
Confidence 456789999999999984 2 799999999999999999 99999965 5667775 333334445678999999986
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ |+++++++|+ ++|++|++.+++|++|.+.|+++| ++||++|+++++|+++..|....++ .+
T Consensus 137 ~------d~~~l~~~i~--------~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl---~~ 199 (433)
T PRK08134 137 G------DIDGWRAAIR--------PNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPF---EH 199 (433)
T ss_pred C------CHHHHHHhcC--------CCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch---hc
Confidence 4 6899999998 789999999999999999999999 9999999999999999888433333 24
Q ss_pred CCcEEEeccCccCCCCCCc--eEEEEEe
Q 037063 336 KPDFLICSFYKIFGENPSG--FGCLFVK 361 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G--~G~L~v~ 361 (588)
++|+++.|.||++| |.| +|.+++.
T Consensus 200 GaD~vv~S~tK~l~--g~g~~~gG~v~~ 225 (433)
T PRK08134 200 GADLVYHSATKFLG--GHGTAIGGVLVD 225 (433)
T ss_pred CCCEEEeccccccC--CCCCceEEEEEe
Confidence 59999999999998 556 6777764
|
|
| >KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-24 Score=229.74 Aligned_cols=397 Identities=22% Similarity=0.196 Sum_probs=281.1
Q ss_pred HhhhccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhH
Q 037063 100 RAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESE 179 (588)
Q Consensus 100 R~~~f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~ 179 (588)
|+++|.++ + |||+++.+++++++.+...-........||||. +..++ ...+
T Consensus 14 r~~e~s~~--~---yldhag~tl~sesq~~g~~~~sq~~e~~nphs~-------------------~~ts~-----~l~~ 64 (728)
T KOG2142|consen 14 RDREFSRL--A---YLDHAGRTLFSESQLEGVAFQSQSSENANPHSH-------------------LGTSR-----SLAR 64 (728)
T ss_pred hhHHHHHH--H---HHHhhhhhhhhhcccchhhhhhhccccCCCccc-------------------ccchH-----HHHH
Confidence 77889887 3 999999999999999985433444455566542 22222 2378
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCe-E---EEcC-CCchhHHHHHHHHHHhcCCEEEEE
Q 037063 180 LESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPR-L---LTVY-DHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 180 ~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~-l---l~~~-e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
.++++|-+|.++++....+|.++||. .|+|+++++++||+-...+ + -++. .|-+++...|.. ...|.-+..+
T Consensus 65 ~v~Q~r~ril~~f~tta~dy~v~lp~-~t~al~~vae~fp~~s~tekid~lrs~~y~hls~s~~~~~~--~~~~~gl~sy 141 (728)
T KOG2142|consen 65 LVAQVRLRILALFNTTAFDYEVSLPA-LTEALKLVAEAFPFYSQTEKIDNLRSDEYGHLSSSGHLMRL--DYSGIGLFSY 141 (728)
T ss_pred HHHHHHHHHHHHhccccccccchhHH-HHHHHHHHHHhCccccccccccchhhhhhcccccccceeee--eeeccceEEe
Confidence 89999999999999999999999999 9999999999999754333 3 2333 332322212211 1223333333
Q ss_pred -ecc--CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCC
Q 037063 255 -EFA--WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTL 330 (588)
Q Consensus 255 -~~~--~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l 330 (588)
... |+....+ +-... .......|+..+.++|+.|.++-..-| .+.-..+|+++||++..+. ..+|
T Consensus 142 ~q~~~i~~~~~~s---ls~~~------~~ls~~~L~~g~a~~nfeg~kik~ri~d~L~ipe~~y~lldtaSrvS--af~L 210 (728)
T KOG2142|consen 142 SQTNEISDSEEFS---LSESE------ANLSEHSLFGGAAQSNFEGDKIKLRIMDRLNIPESEYVLLDTASRVS--AFPL 210 (728)
T ss_pred eeeeecccccccc---ccccc------cCcccchhcccchhcccccceeeeeeecccccCCceEEEEEeecccc--cccc
Confidence 111 1111111 11111 112467899999999999998554445 4444779999999999887 5788
Q ss_pred CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 331 GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
+++.+++|++.. ++|+||+ |+ |+|.+.++..+.. |+ ++.+..........+...-.++| +.||.++..+
T Consensus 211 daesy~f~~~~~-lltiFgy-et--gAvlv~~r~A~~~-----Gg-kt~sa~f~wp~~~l~s~~lkkr~-e~gk~~~kd~ 279 (728)
T KOG2142|consen 211 DAESYPFDFNPK-LLTIFGY-ET--GAVLVMNRSAELK-----GG-KTASAEFSWPMLYLLSEKLKKRF-EDGKLRFKDI 279 (728)
T ss_pred hHhhCCCcccch-heeecCC-Cc--hhhHHHhhhhHhh-----cC-ccceeecccchHHHHHHHHHHHH-hhccccccch
Confidence 999999999999 9999998 77 7777777665433 32 44443221110000000112478 9999999987
Q ss_pred hhHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCC--CCCCcccEEEEEeecCCCC
Q 037063 411 SSKLVECKGLDHADAL--GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPK--VMFDRGPSLAFNVFDWNGT 486 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~--G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~--~~~~rg~iv~f~~~~~~g~ 486 (588)
+.+..+++.+.++ |+..+..+...+++++.-.|+++.| |-|.+++|+.. .+...++++.|++...+|.
T Consensus 280 ---a~gl~vFp~~sRvtG~~ysy~wmt~al~~~whvlLda~~l-----G~kdmd~yglS~f~Pdfqg~sf~fv~g~d~ps 351 (728)
T KOG2142|consen 280 ---AQGLFVFPTQSRVTGGMYSYSWMTLALANNWHVLLDALAL-----GPKDMDSYGLSLFQPDFQGPSFYFVFGRDDPS 351 (728)
T ss_pred ---hhheeccchHhhhcccchhHHHHHHHHhhhHHHHHhhhcc-----CcchHhhhhhhccCccceeeeEEEEeccCCCC
Confidence 5666777777776 5999999999999999999999877 45888888742 2456799999999988888
Q ss_pred CcCHHHHHHHHHhCCcEeccccccCcccccchHH----HHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHH
Q 037063 487 RIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQ----ERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 487 ~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~----~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l 562 (588)
.+...+|.+.+ -.||.+++||+||+|.+..+.+ .....+..+++|++. +|.+ +| |++.+.+|+..+..++
T Consensus 352 gfGcl~VkKs~-i~~l~lrtGcfcn~Gack~~pgl~~~~~~~~~~~g~~cgD~-dg~~---~s-~~~~~~~~~~a~~~~~ 425 (728)
T KOG2142|consen 352 GFGCLEVKKSA-ISGLELRTGCFCNIGACKIYPGLYLEMSQKGLSAGKGCGDN-DGQP---VS-GYMQTPADVGAYLSAQ 425 (728)
T ss_pred ceeeeeeehhh-hhceeccCCCCCCCcceeecccccHHHHHHHhhhccccccC-CCCc---cc-ccccchhhhhHHHHHh
Confidence 88888888888 8999999999999999887764 333445666778766 6666 78 9999999999999887
Q ss_pred HH
Q 037063 563 SR 564 (588)
Q Consensus 563 ~~ 564 (588)
.+
T Consensus 426 v~ 427 (728)
T KOG2142|consen 426 VS 427 (728)
T ss_pred hh
Confidence 54
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=206.00 Aligned_cols=286 Identities=12% Similarity=0.086 Sum_probs=197.2
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNL 261 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~ 261 (588)
.++|+.|++++++++++ |++|+|+++++.+++.++ +++||+|+++...+.+. ...++..|++++.++++ +++
T Consensus 63 ~~lr~aia~~~~~~~~~--I~it~G~~~al~~~~~~l-~~~gd~vlv~~P~y~~~----~~~~~~~g~~~~~v~~~-~~~ 134 (353)
T PRK05387 63 DALRQAIAAYYGLDPEQ--VFVGNGSDEVLAHAFLAF-FNHDRPLLFPDITYSFY----PVYAGLYGIPYEEIPLD-DDF 134 (353)
T ss_pred HHHHHHHHHHhCCCHHH--EEEcCCHHHHHHHHHHHh-cCCCCEEEEeCCCHHHH----HHHHHHcCCEEEEeecC-CCC
Confidence 58999999999998765 999999999999999999 89999977665544322 34456789999999987 567
Q ss_pred ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHc-CcEEEEeCCCc--CCCCCCCCCCCCCCC
Q 037063 262 RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEK-GWHVLLDATAL--GSKDMDTLGLSLFKP 337 (588)
Q Consensus 262 ~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~-g~~vvvDaa~~--~~~d~~~l~l~~~~~ 337 (588)
.+|.+++++ .+++|++++++||||..+|.+++ ++++.. ++++|+|.+.. .+....++ ++....
T Consensus 135 ~~d~~~l~~------------~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~-~~~~~~ 201 (353)
T PRK05387 135 SIDVEDYLR------------PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPL-IDRYPN 201 (353)
T ss_pred CCCHHHHHh------------cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHH-HhhCCC
Confidence 788887752 34688999999999999999999 888775 99999999742 11111111 112235
Q ss_pred cEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHH
Q 037063 338 DFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVEC 417 (588)
Q Consensus 338 D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~ 417 (588)
.+++.|++|.+|.+..++|+++.++++++.+....... ...+.+.... .++.
T Consensus 202 ~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~~~-------------------------~~~~~~~~~q---~~~~ 253 (353)
T PRK05387 202 LLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKNSF-------------------------NSYPLDRLAQ---AGAI 253 (353)
T ss_pred EEEEEehhHhhcchhhhceeeecCHHHHHHHHHhhccC-------------------------CCCCcCHHHH---HHHH
Confidence 78999999988853456999999888777665332110 0011121111 2333
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHH
Q 037063 418 KGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLA 497 (588)
Q Consensus 418 ~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l 497 (588)
.+|+... .++++.+++.+.++++.+.|+++ +++++ | ..+.++.+.+.+ .+...+.+.|
T Consensus 254 ~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~-~----~~~~~~~~~~~~-----~~~~~~~~~l 311 (353)
T PRK05387 254 AAIEDEA--YFEETRAKVIATRERLVEELEAL----------GFEVL-P----SKANFVFARHPS-----HDAAELAAKL 311 (353)
T ss_pred HHhcCHH--HHHHHHHHHHHHHHHHHHHHHHC----------CCeEC-C----CcCcEEEEECCC-----CCHHHHHHHH
Confidence 4443211 14667777788888899988874 23443 2 234555555443 4567777778
Q ss_pred HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 498 DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 498 ~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
.++||.++. ++.+ ...++||+|++ +.+|++++++.|++++.
T Consensus 312 ~~~gi~v~~--~~~~------------------------~~~~~iRis~~---~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 312 RERGIIVRH--FNKP------------------------RIDQFLRITIG---TDEEMEALVDALKEILA 352 (353)
T ss_pred HHCCEEEEE--CCCC------------------------CCCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 889999873 2210 11128999987 67999999999988654
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=208.37 Aligned_cols=349 Identities=14% Similarity=0.084 Sum_probs=225.1
Q ss_pred CCCCCCCCHHHHHHhhhhcccC-cCCCCCCCCCCCCCCCCCcccccccccccccccccCCch-hHHHHHHHHHHHHHhCC
Q 037063 117 YIGHGLFSYSQMHSCSSNVHSS-AASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEE-SELESKIRKRIMDFMNI 194 (588)
Q Consensus 117 ~a~~gl~~~~~~~~~~~~~~~~-~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~-~~~~~~~r~~ia~~lga 194 (588)
+++-+++++.+.+++..++... ..++|.+ ....|... ..+++.+++.+++++|+
T Consensus 25 ~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~g~ 80 (402)
T cd00378 25 IASENFTSPAVMEAMGSDLTNKYAEGYPGK------------------------RYYGGCEYVDEIEDLAIERAKKLFGA 80 (402)
T ss_pred eccCCcCCHHHHHHhcccccccccCCCCCC------------------------cccCCchHHHHHHHHHHHHHHHHhCC
Confidence 4777788999999986655221 1234321 11112222 34444578889999999
Q ss_pred CCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccCC--CCccCHHHHHHH
Q 037063 195 SEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAWP--NLRIHSGKLMKK 271 (588)
Q Consensus 195 ~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~--~~~i~~e~l~~~ 271 (588)
+.. .|+++ |+|+|+.+++.++ +++||+|++ ..+|++....+....++..|+++..++++.. ++.+|+++++++
T Consensus 81 ~~~--~v~~~-sgt~a~~~~l~~l-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~ 156 (402)
T cd00378 81 EYA--NVQPH-SGSQANLAVYFAL-LEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKM 156 (402)
T ss_pred Cce--eeecC-CcHHHHHHHHHHh-cCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHH
Confidence 643 25555 5689999999999 899999664 4555432111211124567888888877543 688999999999
Q ss_pred HhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC---CCCCCCCCCCCCcEEEeccCcc
Q 037063 272 IVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK---DMDTLGLSLFKPDFLICSFYKI 347 (588)
Q Consensus 272 i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~---d~~~l~l~~~~~D~vv~S~~K~ 347 (588)
+.. ++++++++++.+ +|...|+++| ++|+++|++|++|++++.+. ......+. .+|++++|+||+
T Consensus 157 i~~-------~~~~~v~~~~~~--~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~--~~dv~~~s~sK~ 225 (402)
T cd00378 157 ALE-------FKPKLIVAGASA--YPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVTTTTHKT 225 (402)
T ss_pred HHh-------CCCCEEEecCcc--cCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc--CCcEEEeccccC
Confidence 862 468898887765 4678899999 99999999999999976541 01112222 479999999997
Q ss_pred CCCCCCceEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHh
Q 037063 348 FGENPSGFGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL 426 (588)
Q Consensus 348 ~G~~P~G~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~ 426 (588)
|+. |.| |+++.++ ++++.+......+ ..+++.+..+ +++..++..+...
T Consensus 226 l~G-~~g-g~i~~~~~~~~~~l~~~~~~~-------------------------~~~~~~~~~~---~a~~~al~~~~~~ 275 (402)
T cd00378 226 LRG-PRG-GLILTRKGELAKKINSAVFPG-------------------------LQGGPHLHVI---AAKAVALKEALEP 275 (402)
T ss_pred CCC-CCc-eEEEeccHHHHHHHHHHhCcc-------------------------ccCCchHHHH---HHHHHHHHHHhhH
Confidence 742 665 6666666 7766654322110 1122222222 4555666655443
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEecc
Q 037063 427 GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSC 506 (588)
Q Consensus 427 G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~ 506 (588)
++++..+++.++++++.+.|.++ +++++... ..+.++.+.+.+. + .+...+.++|.++||.++.
T Consensus 276 ~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~---~~~~~v~v~~~~~-~--~~~~~~~~~l~~~gI~v~~ 339 (402)
T cd00378 276 EFKAYAKQVVENAKALAEALKER----------GFKVVSGG---TDNHLVLVDLRPK-G--ITGKAAEDALEEAGITVNK 339 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC----------CCeEeecC---CCCeEEEEeCCcc-C--CCHHHHHHHHHHcCcEEcC
Confidence 46778888999999999999874 34454221 2355666666532 1 3456778888999999976
Q ss_pred ccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC----CHHHHHHHHHHHHHhhhhhh
Q 037063 507 GFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT----NFEDTYRLWAFVSRFLDADF 570 (588)
Q Consensus 507 G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~----t~eDv~~li~~l~~~l~~~~ 570 (588)
+.+ |.... . ..+...+|++++..+ +.+||+++++.|+++++...
T Consensus 340 ~~~--p~~~~----------~--------~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~~~ 387 (402)
T cd00378 340 NTL--PWDPS----------S--------PFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKDAE 387 (402)
T ss_pred CcC--CCCCC----------C--------CCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence 422 11000 0 012238999998766 69999999999999876655
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-21 Score=209.83 Aligned_cols=352 Identities=11% Similarity=0.020 Sum_probs=222.4
Q ss_pred CeeeecCCCCCCCCHHHHHHhhhhcccC-cCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH-HHHHHH
Q 037063 111 NYVCFDYIGHGLFSYSQMHSCSSNVHSS-AASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES-KIRKRI 188 (588)
Q Consensus 111 ~~vyLD~a~~gl~~~~~~~~~~~~~~~~-~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~-~~r~~i 188 (588)
+.+.|+ ++-+++|+.+++++..++... ..+++. +....|....+.++ .+|+.+
T Consensus 26 ~~~~l~-~~~n~~~~~v~~a~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~e~~~~~~l 80 (416)
T PRK00011 26 EHIELI-ASENFVSPAVMEAQGSVLTNKYAEGYPG------------------------KRYYGGCEYVDVVEQLAIDRA 80 (416)
T ss_pred cCeeee-cccCcCCHHHHHHHhchhhcccccCCCC------------------------ccccccchHHHHHHHHHHHHH
Confidence 444555 466668999999986654221 112221 11111222233344 478899
Q ss_pred HHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHH
Q 037063 189 MDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGK 267 (588)
Q Consensus 189 a~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~ 267 (588)
++++|++... |++++ +|+|+.+++.++ +++||+|++ ..+|.+....+........|++++.++++..++.+|+++
T Consensus 81 a~~~g~~~~~--i~~~s-gt~al~~~l~~l-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~ 156 (416)
T PRK00011 81 KELFGAEYAN--VQPHS-GSQANAAVYFAL-LKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDE 156 (416)
T ss_pred HHHhCCCcee--eecCC-chHHHHHHHHHh-cCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHH
Confidence 9999997532 66654 578999999999 899999664 445543111111112234578888888875567899999
Q ss_pred HHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCC---CCCCCCCCCCCcEEEec
Q 037063 268 LMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKD---MDTLGLSLFKPDFLICS 343 (588)
Q Consensus 268 l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d---~~~l~l~~~~~D~vv~S 343 (588)
++++++. .++++|++++ +.+|...|+++| ++|+++|+++++|+++..+.- ..+..+. .+|++++|
T Consensus 157 l~~~i~~-------~~~k~v~~~~--~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~--~~di~~~S 225 (416)
T PRK00011 157 VEKLALE-------HKPKLIIAGA--SAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP--HADVVTTT 225 (416)
T ss_pred HHHHHHh-------cCCCEEEECC--CcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC--CCcEEEec
Confidence 9999972 3688888864 346788899999 999999999999999866521 1122232 48999999
Q ss_pred cCccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHH
Q 037063 344 FYKIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDH 422 (588)
Q Consensus 344 ~~K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~ 422 (588)
+||+++. |.| |+++.+ +++++.++..... + ..+++.... ++++..++..
T Consensus 226 ~~K~l~g-~~g-g~i~~~~~~~~~~l~~~~~~--~-----------------------~~~~~~~~~---~aa~~~a~~~ 275 (416)
T PRK00011 226 THKTLRG-PRG-GLILTNDEELAKKINSAVFP--G-----------------------IQGGPLMHV---IAAKAVAFKE 275 (416)
T ss_pred CCcCCCC-CCc-eEEEeCCHHHHHHHHHHhCc--c-----------------------ccCCccHHH---HHHHHHHHHH
Confidence 9997642 665 677765 4666655432211 0 011222222 2444455544
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCc
Q 037063 423 ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNI 502 (588)
Q Consensus 423 l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI 502 (588)
+...+++.+.++.+++++++++.|.++ +++++. . ...++++.+.+.+. .++...+.+.|.++||
T Consensus 276 ~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~-~--~~~~~~~~i~~~~~---~~~~~~~~~~L~~~GI 339 (416)
T PRK00011 276 ALEPEFKEYAQQVVKNAKALAEALAER----------GFRVVS-G--GTDNHLVLVDLRSK---GLTGKEAEAALEEANI 339 (416)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhC----------CCeeee-c--CCCCeEEEEeCccc---CCCHHHHHHHHHHcCc
Confidence 434467888999999999999999885 345542 1 12346777766432 1456778888889999
Q ss_pred EeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCC----CCCHHHHHHHHHHHHHhhhh
Q 037063 503 SLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGC----LTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 503 ~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~----~~t~eDv~~li~~l~~~l~~ 568 (588)
.++.+..-.. .. . ..+...+|++... ..+.+||+++++.|++++..
T Consensus 340 ~v~~~~~p~~-~~------------~-------~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 340 TVNKNAVPFD-PR------------S-------PFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred EEccCcCCCC-CC------------C-------CCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 9875421100 00 0 0111268986533 34699999999999998765
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-21 Score=202.19 Aligned_cols=287 Identities=13% Similarity=0.165 Sum_probs=199.8
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNL 261 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~ 261 (588)
.++|+.|++++|+++++ |++|+|+++++.+++.++ +++||+|++....+. .+ ...++..|++++.++.+ .++
T Consensus 89 ~~lr~~ia~~~~~~~~~--I~~t~Ga~~~i~~~~~~~-~~~gd~Vlv~~P~y~-~y---~~~~~~~g~~~~~v~~~-~~~ 160 (380)
T PLN03026 89 RRLRAALAEDSGLESEN--ILVGCGADELIDLLMRCV-LDPGDKIIDCPPTFG-MY---VFDAAVNGAEVIKVPRT-PDF 160 (380)
T ss_pred HHHHHHHHHHhCcChhh--EEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChH-HH---HHHHHHcCCEEEEeecC-CCC
Confidence 58999999999998765 999999999999999998 799999776544433 22 34556789999999986 567
Q ss_pred ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCc--CCCCCCCCC-CCCCCC
Q 037063 262 RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATAL--GSKDMDTLG-LSLFKP 337 (588)
Q Consensus 262 ~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~--~~~d~~~l~-l~~~~~ 337 (588)
.++.++|++++.. +++++|++++++||||..+|.+++ ++++.. ++||+|.+.. ... ..... +.....
T Consensus 161 ~~d~~~l~~~~~~-------~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~-~~~~~~~~~~~~ 231 (380)
T PLN03026 161 SLDVPRIVEAVET-------HKPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQ-ESRMKWVKKYDN 231 (380)
T ss_pred CcCHHHHHHHHhc-------cCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCC-cchHHHHHhCCC
Confidence 7899999998831 679999999999999999999999 888754 8999999842 110 01111 122335
Q ss_pred cEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHH
Q 037063 338 DFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVEC 417 (588)
Q Consensus 338 D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~ 417 (588)
.+++.||.|.||.+..++|+++.++++++.+....... + .+... ..+..
T Consensus 232 viv~~SfSK~~glaGlRiGy~~~~~~~i~~l~~~~~~~-~---------------------------~~~~~---q~aa~ 280 (380)
T PLN03026 232 LIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPY-N---------------------------VSVAA---EVAAC 280 (380)
T ss_pred EEEEecchHhhcCccccceeeecCHHHHHHHHHhcCCC-C---------------------------CCHHH---HHHHH
Confidence 68899999999964566999999888776654332110 0 01111 12333
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHH
Q 037063 418 KGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLA 497 (588)
Q Consensus 418 ~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l 497 (588)
++|+.-. . +++..+++++.++++.+.|+++ +.+.++ | ..+..+.+.+.+ + ++...+.+.|
T Consensus 281 ~aL~~~~-~-~~~~~~~~~~~r~~l~~~L~~~---------~~~~~~-p----~~~~f~~~~~~~--~--~~~~~~~~~l 340 (380)
T PLN03026 281 AALSNPK-Y-LEDVKNALVEERERLFGLLKEV---------PFLEPY-P----SDANFILCRVTS--G--RDAKKLKEDL 340 (380)
T ss_pred HHhhCHH-H-HHHHHHHHHHHHHHHHHHHHHC---------CCCeEC-C----CCCeEEEEECCC--C--CCHHHHHHHH
Confidence 4453211 1 4556667777788888888875 334432 2 235566666542 1 3466677777
Q ss_pred HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 498 DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 498 ~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
.++||.|+.+... .+.+++|||++ +.+|+++|+++|+++
T Consensus 341 ~~~gI~v~~~~~~--------------------------~~~~~lRis~~---~~~~~~~l~~al~~~ 379 (380)
T PLN03026 341 AKMGVMVRHYNSK--------------------------ELKGYIRVSVG---KPEHTDALMEALKQL 379 (380)
T ss_pred HHCCeEEEECCCC--------------------------CCCCEEEEecC---CHHHHHHHHHHHHHh
Confidence 7899999865210 11238999998 789999999998764
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-21 Score=203.11 Aligned_cols=300 Identities=16% Similarity=0.167 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHHHhC--CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 179 ELESKIRKRIMDFMN--ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 179 ~~~~~~r~~ia~~lg--a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++.+.+.+.+.+++| ++++ +|++|+|+++|+.+++..+ +++||+|++....+... ...++..|++++.++.
T Consensus 65 ~lr~~la~~~~~~~~~~~~~~--~i~~t~g~~~al~~~~~~l-~~~gd~vl~~~p~y~~~----~~~~~~~g~~~~~v~~ 137 (382)
T PRK06108 65 ELREALARYVSRLHGVATPPE--RIAVTSSGVQALMLAAQAL-VGPGDEVVAVTPLWPNL----VAAPKILGARVVCVPL 137 (382)
T ss_pred HHHHHHHHHHHHHhCCCcCcc--eEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCccch----HHHHHHCCCEEEEeeC
Confidence 444455555555557 5554 4999999999999999998 89999976543333212 3455678999999998
Q ss_pred cCC--CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcCC-----C
Q 037063 257 AWP--NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALGS-----K 325 (588)
Q Consensus 257 ~~~--~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~~-----~ 325 (588)
+.. ++.++.++|++.++ ++++++++++++|+||..+|.++ | ++|+++|+++|+|.+...- .
T Consensus 138 ~~~~~~~~~d~~~l~~~~~--------~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~ 209 (382)
T PRK06108 138 DFGGGGWTLDLDRLLAAIT--------PRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGG 209 (382)
T ss_pred CCCCCCccCCHHHHHHhcC--------ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCC
Confidence 632 34589999998887 67899999999999999998655 5 7889999999999983321 0
Q ss_pred CC-CCCCCCC-CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCC
Q 037063 326 DM-DTLGLSL-FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP 403 (588)
Q Consensus 326 d~-~~l~l~~-~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G 403 (588)
.. .-+++.. ....+++.|++|.||.++.++|++++++++++.+....... ..+
T Consensus 210 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~~~~~-------------------------~~~ 264 (382)
T PRK06108 210 RAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIEYN-------------------------TSC 264 (382)
T ss_pred CCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHHHHHHHHHhc-------------------------ccC
Confidence 00 1122211 12458899999988853456899999988877664332100 011
Q ss_pred CCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE-EEEeec
Q 037063 404 ESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL-AFNVFD 482 (588)
Q Consensus 404 T~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv-~f~~~~ 482 (588)
++.+.+ .+...+|+...+. ++++.++++.+++++.+.|.++ ++++++.| .++++ .+.+.+
T Consensus 265 ~~~~~q----~a~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~p-----~~g~~~~~~l~~ 325 (382)
T PRK06108 265 VAQFVQ----RAAVAALDEGEDF-VAELVARLRRSRDHLVDALRAL---------PGVEVAKP-----DGAMYAFFRIPG 325 (382)
T ss_pred CChHHH----HHHHHHHhCChHH-HHHHHHHHHHHHHHHHHHHHhC---------CCCcccCC-----CeeEEEEEeCCC
Confidence 111111 2222333321111 4677888888889999998874 45666544 34433 344443
Q ss_pred CCCCCcCHHHHH-HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHH
Q 037063 483 WNGTRIDPALVQ-KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAF 561 (588)
Q Consensus 483 ~~g~~i~~~~v~-~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~ 561 (588)
. .+...+. ++++++||.+++|..+.+ .+.++||+|++. +.++++.+++.
T Consensus 326 ~----~~~~~~~~~ll~~~gV~v~pg~~f~~------------------------~~~~~~Ris~~~--~~~~l~~~l~~ 375 (382)
T PRK06108 326 V----TDSLALAKRLVDEAGLGLAPGTAFGP------------------------GGEGFLRWCFAR--DPARLDEAVER 375 (382)
T ss_pred C----CCHHHHHHHHHHhCCEEEeCchhhCC------------------------CCCCEEEEEecC--CHHHHHHHHHH
Confidence 1 2344554 456789999988743210 122389999997 88999999999
Q ss_pred HHHhhh
Q 037063 562 VSRFLD 567 (588)
Q Consensus 562 l~~~l~ 567 (588)
|+++++
T Consensus 376 l~~~l~ 381 (382)
T PRK06108 376 LRRFLA 381 (382)
T ss_pred HHHHHh
Confidence 988764
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-21 Score=200.17 Aligned_cols=293 Identities=14% Similarity=0.109 Sum_probs=198.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....+++++.++++++.+ ..|++++|+++.+ .++.++ +++||+|++....+.... ..++..|++++.++.
T Consensus 60 ~~~~~~l~~~la~~~~~~---~~i~~~~G~~~~~-~~l~~~-~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~- 129 (360)
T TIGR00858 60 SPLHEELEEELAEWKGTE---AALLFSSGYLANV-GVISAL-VGKGDLILSDALNHASLI----DGCRLSGARVRRYRH- 129 (360)
T ss_pred cHHHHHHHHHHHHHhCCC---CEEEECchHHHHH-HHHHHh-CCCCCEEEEEccccHHHH----HHHHhcCCceEEecC-
Confidence 356788999999999963 3477777755544 566777 789999765443333122 334567888887753
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC-CCC------C
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK-DMD------T 329 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~-d~~------~ 329 (588)
+|.++|++.++. ....++++|+++++.|+||...|+++| ++|+++|+++|+|+++..+. ... .
T Consensus 130 -----~d~~~l~~~~~~----~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~ 200 (360)
T TIGR00858 130 -----NDVEHLERLLEK----NRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEH 200 (360)
T ss_pred -----CCHHHHHHHHHH----cccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHh
Confidence 478899998872 111357999999999999999999999 99999999999999976531 111 1
Q ss_pred CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 330 LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 330 l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
.++.....|+++.|++|+|| +.| |+++.++++++.+...... . .+ ..++ +..+
T Consensus 201 ~~~~~~~~~i~i~s~sK~~~--~~g-G~~~~~~~~~~~~~~~~~~--~--------------------~~-~~~~-~~~~ 253 (360)
T TIGR00858 201 FGLKPEPVDIQVGTLSKALG--SYG-AYVAGSQALIDYLINRART--L--------------------IF-STAL-PPAV 253 (360)
T ss_pred cCCCccCCcEEEEechhhhh--ccC-cEEEcCHHHHHHHHHhCcc--c--------------------ee-cCCC-CHHH
Confidence 12222347899999999999 666 8988888777655422110 0 00 1111 1122
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcC
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRID 489 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~ 489 (588)
.+++.++++++... +++.+++..+++++.+.|.++ + ++++. ..++++.+.+... .+
T Consensus 254 ---~~a~~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~-------~---~~~~~-----~~~~~~~~~~~~~----~~ 309 (360)
T TIGR00858 254 ---AAAALAALELIQEE--PWRREKLLALIARLRAGLEAL-------G---FTLMP-----SCTPIVPVIIGDN----AS 309 (360)
T ss_pred ---HHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHc-------C---CccCC-----CCCCEEEEEeCCH----HH
Confidence 24555777766543 677889999999999999885 1 33332 2466777776431 23
Q ss_pred HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 490 PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 490 ~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
...+.+.|.++||.++.+.... . ..|..+||+|++.+++.+|++++++.|+
T Consensus 310 ~~~~~~~l~~~gI~v~~~~~~~----------------~-------~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 310 ALALAEELQQQGIFVGAIRPPT----------------V-------PAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred HHHHHHHHHHCCeeEeeeCCCC----------------C-------CCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 4567777778899997642210 0 0122389999999999999999998863
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=197.96 Aligned_cols=287 Identities=13% Similarity=0.100 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
..++|+.|++++++++++ |++|+|+++++.+++.++ +++||+|++....+. .....++..|++++.++++ ++
T Consensus 61 ~~~lr~~ia~~~~~~~~~--i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~----~~~~~~~~~g~~~~~v~~~-~~ 132 (351)
T PRK14807 61 AEKLREELARYCSVVPTN--IFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFA----MYSVYSKIAGAVEIPVKLK-ED 132 (351)
T ss_pred HHHHHHHHHHHhCCCccc--EEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChH----HHHHHHHHcCCeEEEeecC-CC
Confidence 368999999999998765 999999999999999998 899999776543322 2245667789999999987 56
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcC--CCCCCCCCCCCCCC
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALG--SKDMDTLGLSLFKP 337 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~--~~d~~~l~l~~~~~ 337 (588)
+.++.++++++++. .+++++++++++||||..+|.+++ +++++++.++|+|.+..- +....++ +....-
T Consensus 133 ~~~d~~~l~~~~~~-------~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~-~~~~~~ 204 (351)
T PRK14807 133 YTYDVGSFIKVIEK-------YQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDV-INEFEN 204 (351)
T ss_pred CCCCHHHHHHHhhc-------cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHH-hhhCCC
Confidence 77999999999871 378999999999999999999999 999988888999998532 2111111 112224
Q ss_pred cEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHH
Q 037063 338 DFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVEC 417 (588)
Q Consensus 338 D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~ 417 (588)
.+++.|++|.+|.+..++|+++.++++++.+...... +. +..+.+ .++.
T Consensus 205 vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~~--~~-------------------------~~~~~q----~~~~ 253 (351)
T PRK14807 205 LIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKSP--YN-------------------------INSLSQ----VIAL 253 (351)
T ss_pred EEEEecchHhcccchhceeeeecCHHHHHHHHHccCC--CC-------------------------cCHHHH----HHHH
Confidence 5888999999985456799999888877766432211 00 011111 1222
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHH
Q 037063 418 KGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLA 497 (588)
Q Consensus 418 ~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l 497 (588)
..| ....+++..++.+..++++.+.|.++ +++.++. ..++.+-+.+.+ ...+.+.|
T Consensus 254 ~~l---~~~~~~~~~~~~~~~r~~l~~~l~~~---------~g~~~~~-----~~~~~~~i~~~~-------~~~~~~~l 309 (351)
T PRK14807 254 KVL---RTGVLKERVNYILNERERLIKELSKI---------PGIKVYP-----SKTNFILVKFKD-------ADYVYQGL 309 (351)
T ss_pred HHH---hHHHHHHHHHHHHHHHHHHHHHHHhC---------CCcEECc-----CCccEEEEEcCC-------HHHHHHHH
Confidence 333 22124555556666777788888763 4565542 234444444432 56677788
Q ss_pred HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 498 DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 498 ~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
.++||.|+.+... ..+.+++|+|++ +.++.++|++.|++++
T Consensus 310 ~~~gV~v~~~~~~-------------------------~~~~~~iRis~~---~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 310 LERGILVRDFSKV-------------------------EGLEGALRITVS---SCEANDYLINGLKELL 350 (351)
T ss_pred HHCCEEEEECCCC-------------------------CCCCCeEEEEcC---CHHHHHHHHHHHHHhh
Confidence 8889999753110 011128999987 6899999999998764
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.7e-21 Score=201.63 Aligned_cols=320 Identities=12% Similarity=0.085 Sum_probs=214.1
Q ss_pred CCeeeecCCCCCC-CCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGL-FSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRI 188 (588)
Q Consensus 110 ~~~vyLD~a~~gl-~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~i 188 (588)
++.++||.+..++ .|+.+++++.+.+.. . + .|+. .. ..++|+.|
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~--~-----------------------------~Y~~--~~-~~~Lr~ai 87 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSAAL-S--G-----------------------------RYDL--EL-EDDLRTLF 87 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHHHH-h--c-----------------------------CCCC--ch-HHHHHHHH
Confidence 5779999988764 577778877544311 0 0 0111 12 56899999
Q ss_pred HHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHH
Q 037063 189 MDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKL 268 (588)
Q Consensus 189 a~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l 268 (588)
++++|+++++ |++|+|+++++.+++.++ .++||+|++....+. .+ ...++..|++++.++.+ +++.++.+++
T Consensus 88 a~~~~v~~e~--I~it~Gs~~ai~~~~~~l-~~~gd~Vli~~P~y~-~~---~~~~~~~g~~~~~v~~~-~~~~~d~~~l 159 (370)
T PRK09105 88 AAQEGLPADH--VMAYAGSSEPLNYAVLAF-TSPTAGLVTADPTYE-AG---WRAADAQGAPVAKVPLR-ADGAHDVKAM 159 (370)
T ss_pred HHHhCcChhh--EEEcCChHHHHHHHHHHH-cCCCCEEEEeCCChH-HH---HHHHHHcCCeEEEecCC-CCCCCCHHHH
Confidence 9999998775 999999999999999999 889999775544433 12 44667889999999987 5677888888
Q ss_pred HHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH--cCcEEEEeCCCc-CCCCCCCCCCCCCCCc-EEEec
Q 037063 269 MKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE--KGWHVLLDATAL-GSKDMDTLGLSLFKPD-FLICS 343 (588)
Q Consensus 269 ~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~--~g~~vvvDaa~~-~~~d~~~l~l~~~~~D-~vv~S 343 (588)
++. . ++++++++++++||||..+|.++| ++++. +|+++|+|.+.. ........++.....+ +++.|
T Consensus 160 ~~~-~--------~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~S 230 (370)
T PRK09105 160 LAA-D--------PNAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRT 230 (370)
T ss_pred Hhc-C--------CCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEec
Confidence 765 3 568999999999999999999998 66543 489999999852 1101111222122245 55669
Q ss_pred cCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHH
Q 037063 344 FYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHA 423 (588)
Q Consensus 344 ~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l 423 (588)
++|.||.+..++|+++.++++++.+.... . .. .+... ..+...+|+.-
T Consensus 231 fSK~~g~~GlRiG~~v~~~~~i~~l~~~~-~--~~--------------------------~~~~~---~~aa~~~L~~~ 278 (370)
T PRK09105 231 FSKLYGMAGMRLGLAAARPDLLAKLARFG-H--NP--------------------------LPVPA---AAAGLASLRDP 278 (370)
T ss_pred ccHhhcCCccceeeeecCHHHHHHHHhcC-C--CC--------------------------cCHHH---HHHHHHHHhCH
Confidence 99999954445999999988887665431 1 00 01111 12223344321
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcE
Q 037063 424 DALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNIS 503 (588)
Q Consensus 424 ~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~ 503 (588)
.. ++...++.+..++++.+.|.++ +++++.+ .++++.+.+. .+...+.+.|.++||.
T Consensus 279 -~~-~~~~~~~~~~~r~~l~~~L~~~----------g~~~~~~-----~~~f~~~~~~------~~~~~l~~~L~~~gI~ 335 (370)
T PRK09105 279 -KL-VPQRRAENAAVREDTIAWLKKK----------GYKCTPS-----QANCFMVDVK------RPAKAVADAMAKQGVF 335 (370)
T ss_pred -HH-HHHHHHHHHHHHHHHHHHHHHC----------CCCcCCC-----CCcEEEEeCC------CCHHHHHHHHHHCCcE
Confidence 11 4666677888888899998874 2344332 3455544332 2355666666677999
Q ss_pred eccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 504 LSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 504 v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
++.+ +. ...+++|+|++ +.+++++|+++|++++
T Consensus 336 v~~~--~~-------------------------~~~~~~Ris~~---~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 336 IGRS--WP-------------------------IWPNWVRVTVG---SEEEMAAFRSAFAKVM 368 (370)
T ss_pred EecC--CC-------------------------CCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence 8433 10 11128999988 6899999999998765
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-21 Score=200.54 Aligned_cols=284 Identities=12% Similarity=0.158 Sum_probs=193.9
Q ss_pred HHHHHHHHHHhCCCCCCceEEE-ecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVF-TANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvf-t~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
.++|+.+++++|+++++ |++ |+|+++++.+++.++ +++||+|++...++. .....++..|++++.++.+ .+
T Consensus 72 ~~lr~~ia~~~~~~~~~--i~~~~~Ga~~~i~~~~~~~-~~~gd~vlv~~p~y~----~~~~~~~~~g~~~~~~~~~-~~ 143 (361)
T PRK00950 72 PELREALSKYTGVPVEN--IIVGGDGMDEVIDTLMRTF-IDPGDEVIIPTPTFS----YYEISAKAHGAKPVYAKRE-ED 143 (361)
T ss_pred HHHHHHHHHHhCCCHHH--EEEeCCCHHHHHHHHHHHh-cCCCCEEEEcCCChH----HHHHHHHHcCCEEEEeecC-CC
Confidence 68999999999998765 888 788899999999988 789999876655433 2234567789999999875 56
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcC--CCCCCCCCCCCCCC
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALG--SKDMDTLGLSLFKP 337 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~--~~d~~~l~l~~~~~ 337 (588)
+.++++++++.++ ++++++++++++|+||..+|+++| ++|+++|+++++|+++.. +.+...+ +.....
T Consensus 144 ~~~~~~~l~~~~~--------~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~-~~~~~~ 214 (361)
T PRK00950 144 FSLDVDSVLNAIT--------EKTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPL-ALEYDN 214 (361)
T ss_pred CCcCHHHHHHHhc--------cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhCccchHHH-HHhcCC
Confidence 6899999999887 678999999999999999999999 999999999999999642 1111111 111123
Q ss_pred cEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHH
Q 037063 338 DFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVEC 417 (588)
Q Consensus 338 D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~ 417 (588)
-+++.|+.|.+|.+..++|++++++++++.+...... + + .+ . .+..
T Consensus 215 vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~------------------------~---~-~~--~----~~~~ 260 (361)
T PRK00950 215 LIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAKTP------------------------F---S-LT--R----LSQA 260 (361)
T ss_pred EEEEEeehHhhcCchhhcchhcCCHHHHHHHHHhcCC------------------------C---C-CC--H----HHHH
Confidence 4677899999984334589999888777655432211 0 0 01 0 1111
Q ss_pred HHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHH
Q 037063 418 KGLDHADALG-LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKL 496 (588)
Q Consensus 418 ~aL~~l~~~G-~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~ 496 (588)
.++..+...+ +++..++.+.+++++.+.|. ++++ | ..+.++.+.+.. ++...+.+.
T Consensus 261 ~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~-------------~~~~-~----~~~~~i~~~~~~-----~~~~~~~~~ 317 (361)
T PRK00950 261 AAIAALSDKEYIEKSIEHGIKSREYLYNELP-------------FKVY-P----SEANFVLVDVTP-----MTAKEFCEE 317 (361)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC-------------eeEC-C----CcceEEEEECCC-----CCHHHHHHH
Confidence 2233332222 34455555555555544432 3333 2 234566666632 457777777
Q ss_pred HHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 497 ADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 497 l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
|.++||.++.|.... ..+.+.||+|++ +.+|++++++.|++++
T Consensus 318 l~~~gv~v~~~~~f~------------------------~~~~~~lRis~~---~~~~~~~l~~~L~~il 360 (361)
T PRK00950 318 LLKRGVIVRDCTSFR------------------------GLGDYYIRVSIG---TFEENERFLEILKEIV 360 (361)
T ss_pred HHHCCEEEeeCCccC------------------------CCCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence 778899998763210 012238999988 7899999999999875
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=196.33 Aligned_cols=345 Identities=13% Similarity=0.122 Sum_probs=240.7
Q ss_pred CCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHhCCCC
Q 037063 117 YIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMNISE 196 (588)
Q Consensus 117 ~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lga~~ 196 (588)
.+|-+.+|..|++++.+++.. +.+. +++...+++++. .-.++++++++.+.++|+++
T Consensus 9 ~aGPa~lp~~Vl~~~~~~~~~--~~~~----------g~si~eisHRs~----------~F~~i~~~~~~~Lr~Ll~~P- 65 (364)
T PRK12462 9 SGGPGALPDTVLEQVRQAVVE--LPET----------GLSVLGMSHRSS----------WFSSLLAQAEADLRDLLGIP- 65 (364)
T ss_pred cCCCcCCCHHHHHHHHHHHhc--cccc----------CccccccccccH----------HHHHHHHHHHHHHHHHhCCC-
Confidence 477778899999998766532 1110 222333444321 12789999999999999995
Q ss_pred CCceEEEec-CHHHHHHHHHHhCCCCCCCe-E-EEcCCCchhHHHHHHHHHHhcCCEEEEEeccCC---CCccCHHHHHH
Q 037063 197 DDYTLVFTA-NQSSAFKLLAESYPFYSNPR-L-LTVYDHENEAAALMIESSKKRGARVSSAEFAWP---NLRIHSGKLMK 270 (588)
Q Consensus 197 ~e~~vvft~-g~T~al~lv~~s~~~~~gd~-l-l~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~---~~~i~~e~l~~ 270 (588)
++|.|+|.+ |+|.++..+..++ +.+|++ + +....+.+ -.| .+.|++.| ++..+...+. ...++++++
T Consensus 66 ~~y~Vlfl~GggT~~~ea~~~Nl-l~~g~~~~~~~~tG~fg--~r~-~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~-- 138 (364)
T PRK12462 66 DEYGVVFLQGGSSLQFSMIPMNF-SRPGAAAPEYVTTGYWS--RKA-IGEASRVA-AMRVVWDGAASGYRTLPSLAEL-- 138 (364)
T ss_pred CCCeEEEEeccHHHHHHHHHHHc-CCCCCcEEEEEeCCHHH--HHH-HHHHHhcC-CceEecCcCCCCCCcCCCHHHh--
Confidence 557776665 5899999999999 889996 4 45566654 445 56777777 5655543211 122344443
Q ss_pred HHhhhccccCCCcceEEEEeCCCCCCCccCCHHHHHHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCCC
Q 037063 271 KIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGE 350 (588)
Q Consensus 271 ~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G~ 350 (588)
.+. ++.+.|.+++..+.||+.+| ++ .+.+++++++|+++.++ ..+++++++ |+++++.+|.+|
T Consensus 139 ~~~--------~d~~~v~~t~NETstGv~~~--~~--~~~~~~llvvD~sS~~~--s~pid~~~~--dvi~agsQKnlg- 201 (364)
T PRK12462 139 DWD--------ARAPFRHYVSNETVEGLQFP--DA--AGLPDSPLIADMSSDFM--SRPFDVEAY--GMVYAHAQKNLG- 201 (364)
T ss_pred ccC--------CCCcEEEEccCCCCceEecC--cc--cccCCCeEEEEcCchhh--CCCCChHHc--cEEEeeccccCC-
Confidence 122 46788999999999999998 32 23368999999998887 577888875 999999999999
Q ss_pred CCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHh--CH
Q 037063 351 NPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL--GL 428 (588)
Q Consensus 351 ~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~--G~ 428 (588)
|.|+++++++++++++..+... .+.++. ...+ ... -.-||+...+ +++..+|+++.+. |+
T Consensus 202 -P~Gltvvivs~~al~~~~~~~p---~~ldy~------~~~~-~~s----~~nTPpv~~i---y~l~~~l~~i~~e~GGl 263 (364)
T PRK12462 202 -PAGVTVAIIRRALLERVPDTLP---PMLDFR------THVE-HRS----NYNTPPVFAI---YVMALVLRWIRDEIGGV 263 (364)
T ss_pred -CCceEEEEECHHHHhhccccCC---chhhHH------HHHh-cCC----CCCCchHHHH---HHHHHHHHHHHHhccCH
Confidence 7899999999999877654321 111100 0000 000 1227777665 8999999999876 89
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc-cEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccc
Q 037063 429 ILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG-PSLAFNVFDWNGTRIDPALVQKLADRHNISLSCG 507 (588)
Q Consensus 429 ~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg-~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G 507 (588)
+.+.+|.+++++.+++.+.++ +++.. .+..+..|+ -.|+|.+.+.. + ...+.+.++++|+.-..|
T Consensus 264 ~~~~~r~~~ka~~ly~~id~~---------~~~~~-~~~~~~~RS~mnv~f~~~~~~---l-~~~f~~~a~~~gl~~lkG 329 (364)
T PRK12462 264 HAMRDINARKAAMLYATLDAL---------NEVID-CHAHRAARSTMNVAFRFRQPR---L-DTLFKEQSTEAGFCGLSG 329 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHhC---------CCccc-CCCChhhcCcceEEEEcCCHH---H-HHHHHHHHHHCCCccccC
Confidence 999999999999999999985 32221 122334565 57778876631 2 345677788899976555
Q ss_pred cccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 508 FLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 508 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+- ..| .+|+|+--..+.|+|++|++|+++|-++
T Consensus 330 hr--------------------------~vg--g~Ras~yna~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 330 HR--------------------------SIG--GIRASLYNAVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred Cc--------------------------ccC--ceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 21 133 7999999889999999999999998654
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-20 Score=198.44 Aligned_cols=295 Identities=14% Similarity=0.072 Sum_probs=197.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....+++++.++++++. ++ .++++++++++..++..+ +++||+|++...+|.... ..++..|++++.++.
T Consensus 83 ~~~~~~l~~~la~~~~~-~~---~i~~~~g~~~~~~~l~~~-~~~gd~V~~~~~~~~~~~----~~~~~~g~~~~~~~~- 152 (385)
T PRK05958 83 SPAHEALEEELAEWFGA-ER---ALLFSSGYAANLAVLTAL-AGKGDLIVSDKLNHASLI----DGARLSRARVRRYPH- 152 (385)
T ss_pred cHHHHHHHHHHHHHhCC-Cc---EEEECcHHHHHHHHHHHh-CCCCCEEEEeCccCHHHH----HHHHhcCCceEEeCC-
Confidence 45678999999999995 22 444455566666666777 899999765444333122 234557888888764
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC-CCC------C
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK-DMD------T 329 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~-d~~------~ 329 (588)
.|.+++++.++. ..+++.++++.++.|++|...|+++| ++|+++|+++|+|+++..+. ... .
T Consensus 153 -----~d~~~l~~~i~~-----~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~ 222 (385)
T PRK05958 153 -----NDVDALEALLAK-----WRAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAE 222 (385)
T ss_pred -----CCHHHHHHHHHh-----ccCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHh
Confidence 377899998872 11247888888999999999999999 99999999999999986431 100 0
Q ss_pred CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 330 LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 330 l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
.++.....++++.|++|++| +.| |+++.++++.+.+...... . .+ .. ..+..+
T Consensus 223 ~~~~~~~~~i~~~s~sK~~~--~~G-g~~~~~~~~~~~~~~~~~~--~--------------------~~-~~-~~~~~~ 275 (385)
T PRK05958 223 AGLAGEPDVILVGTLGKALG--SSG-AAVLGSETLIDYLINRARP--F--------------------IF-TT-ALPPAQ 275 (385)
T ss_pred hCCCCCCceEEEEechhhcc--cCC-cEEEcCHHHHHHHHHhCcc--c--------------------ee-cC-CCCHHH
Confidence 12322334588999999999 556 8888887766544321100 0 00 11 122222
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcC
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRID 489 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~ 489 (588)
. +++.++++.+... +.+.+++..+++++.+.|.++ | ++++. ..++++.|.+.+. .+
T Consensus 276 ~---aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~-------~---~~~~~-----~~~~~~~~~~~~~----~~ 331 (385)
T PRK05958 276 A---AAARAALRILRRE--PERRERLAALIARLRAGLRAL-------G---FQLMD-----SQSAIQPLIVGDN----ER 331 (385)
T ss_pred H---HHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-------C---CCcCC-----CCCCEEEEEeCCH----HH
Confidence 2 4555777777653 678889999999999999875 2 33332 2467888876531 23
Q ss_pred HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 490 PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 490 ~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
...+.+.|.++||.++.+.... . ..|..+||+|++.+++.+|++++++.|+++|
T Consensus 332 ~~~~~~~l~~~gI~v~~~~~~~----------------~-------~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 332 ALALAAALQEQGFWVGAIRPPT----------------V-------PAGTSRLRITLTAAHTEADIDRLLEALAEAL 385 (385)
T ss_pred HHHHHHHHHHCCceEecccCCC----------------C-------CCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence 4556777777899997531110 0 0122389999999999999999999998764
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-20 Score=204.21 Aligned_cols=308 Identities=12% Similarity=0.116 Sum_probs=204.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....+++++.||+++|.+ +.|+|++|.... ..++.++ +++||+|+++...|.... ..++..|++++.++.+
T Consensus 145 ~~~~~ele~~lA~~~g~~---~ai~~~~G~~an-~~~i~al-~~~Gd~Vi~d~~~h~s~~----~~~~~~Ga~v~~~~~~ 215 (489)
T PLN02483 145 TKLHRELEELVARFVGKP---AAIVFGMGYATN-STIIPAL-IGKGGLIISDSLNHNSIV----NGARGSGATIRVFQHN 215 (489)
T ss_pred cHHHHHHHHHHHHHhCCC---cEEEECCHHHHH-HHHHHHh-CCCCCEEEEcchhhHHHH----HHHHHcCCeEEEEeCC
Confidence 567889999999999963 358887765544 4666677 899999876655444233 3456789999998864
Q ss_pred CCCCccCHHHHHHHHhhhc----cccCCCc-ceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCC-----
Q 037063 258 WPNLRIHSGKLMKKIVGKR----KKKKKKK-RGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKD----- 326 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~----~~~~~~~-t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d----- 326 (588)
+.+++++.+.+.. .+...+. ..+|++.++.|++|.+.++++| ++|+++|+++++|+++..+..
T Consensus 216 ------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~ 289 (489)
T PLN02483 216 ------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGR 289 (489)
T ss_pred ------CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCC
Confidence 4677777665210 0000111 2477888889999999999999 999999999999999875410
Q ss_pred --CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 327 --MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 327 --~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
..-+++....+|+++.|++|.|| +.| |+++.++++++.+.....+. . ..++
T Consensus 290 g~~~~~~v~~~~~dI~~~SfSKs~g--~~G-G~i~~~~~li~~l~~~~~~~----------------------~--~~~~ 342 (489)
T PLN02483 290 GVCELLGVDPADVDIMMGTFTKSFG--SCG-GYIAGSKELIQYLKRTCPAH----------------------L--YATS 342 (489)
T ss_pred chHHhcCCCcccCcEEEEecchhcc--cCc-eEEEcCHHHHHHHHHhCccc----------------------c--ccCC
Confidence 11233333357999999999999 566 99999998888776433210 0 0111
Q ss_pred CCccchhhHHHHHHHHHHHHHh-C---HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEe
Q 037063 405 SSISGVSSKLVECKGLDHADAL-G---LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNV 480 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~~l~~~-G---~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~ 480 (588)
.+.... +++.++|+.+... | ..+..+++++.++++++.|+++ ++.++++ ..++++.+.+
T Consensus 343 ~~p~~~---~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~----------G~~v~~~----~~sp~~~l~l 405 (489)
T PLN02483 343 MSPPAV---QQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM----------GFEVLGD----NDSPVMPIML 405 (489)
T ss_pred cCHHHH---HHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC----------CCcccCC----CCCCEEEEEE
Confidence 121121 3445677766422 1 2334667888899999999885 3455554 2346666665
Q ss_pred ecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHH
Q 037063 481 FDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 481 ~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~ 560 (588)
... .....+.+.|.++||.+....++.. ..+.+.+|++++..+|.|||+++++
T Consensus 406 ~~~----~~~~~~~~~Ll~~GI~v~~~~fp~~-----------------------p~~~~~vRi~isa~~t~edId~~l~ 458 (489)
T PLN02483 406 YNP----AKIPAFSRECLKQNVAVVVVGFPAT-----------------------PLLLARARICISASHSREDLIKALE 458 (489)
T ss_pred CCH----HHHHHHHHHHHHCCcEEeeeCCCCC-----------------------CCCCceEEEEeCCCCCHHHHHHHHH
Confidence 431 1233455556678999874322210 0122389999999999999999999
Q ss_pred HHHHhhhhhhc
Q 037063 561 FVSRFLDADFV 571 (588)
Q Consensus 561 ~l~~~l~~~~~ 571 (588)
.|+++++...+
T Consensus 459 ~L~~~~~~~~~ 469 (489)
T PLN02483 459 VISEVGDLVGI 469 (489)
T ss_pred HHHHHHHHhCc
Confidence 99998765533
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-20 Score=197.61 Aligned_cols=304 Identities=12% Similarity=0.060 Sum_probs=198.9
Q ss_pred hHHHHHHHHHHHHHhCCCCC-CceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISED-DYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~-e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++.+.+++.+++++|++.+ +++|++|+|+++++.+++.++ +++||+|++....+... ...++..|++++.++.
T Consensus 68 ~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~~----~~~~~~~g~~~~~v~~ 142 (389)
T PRK05957 68 PPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAI-TDPGDEIILNTPYYFNH----EMAITMAGCQPILVPT 142 (389)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcCH----HHHHHhcCCEEEEeec
Confidence 57788999999999997533 345999999999999999988 89999977654333212 2234668999999998
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCc--C--CCC-C
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATAL--G--SKD-M 327 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~--~--~~d-~ 327 (588)
+ .++.++.++|++.++ +++++|++++++|+||..+| +++| ++|+++|+++++|.+.. . +.. .
T Consensus 143 ~-~~~~~d~~~l~~~i~--------~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~ 213 (389)
T PRK05957 143 D-DNYQLQPEAIEQAIT--------PKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHF 213 (389)
T ss_pred C-CCCCcCHHHHHHhcC--------cCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCcc
Confidence 7 667899999999987 68999999999999999999 6667 88999999999999832 1 110 1
Q ss_pred CCCCC-CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 328 DTLGL-SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 328 ~~l~l-~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
....+ +...-.+++.|+.|.+|.+...+|++++++++++.+....... ..+++.
T Consensus 214 ~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~ 268 (389)
T PRK05957 214 SPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKIQDTI-------------------------LICPPV 268 (389)
T ss_pred ChhhCCCccCcEEEEecchhhccCccceeEEEecCHHHHHHHHHHHhhc-------------------------ccCCCc
Confidence 11111 1122347888999999843334999999888877665432110 011122
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe-EEEeCCCCCCCccc-EEEEEeecCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPL-VRIYGPKVMFDRGP-SLAFNVFDWN 484 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~-v~i~~p~~~~~rg~-iv~f~~~~~~ 484 (588)
+.+. ++..+|+.-... +++..+++++.++.+.+.|+++ ++ +.++.| .++ .+-+.+..
T Consensus 269 ~~q~----~~~~~l~~~~~~-~~~~~~~~~~~r~~l~~~L~~~---------~~~~~~~~~-----~gg~~~~~~~~~-- 327 (389)
T PRK05957 269 VSQY----AALGALQVGKSY-CQQHLPEIAQVRQILLKSLGQL---------QDRCTLHPA-----NGAFYCFLKVNT-- 327 (389)
T ss_pred HHHH----HHHHHHhCChHH-HHHHHHHHHHHHHHHHHHHHhc---------CCCccccCC-----CeeEEEEEeCCC--
Confidence 2221 112233210000 3445555667777788888764 22 233322 333 33344432
Q ss_pred CCCcCHHHHH-HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 485 GTRIDPALVQ-KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 485 g~~i~~~~v~-~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
+ ++..++. ++++++||.+.+|..+.. .+.++||+|++.. +.+++.+.++.|.
T Consensus 328 ~--~~~~~~~~~l~~~~gv~v~pg~~f~~------------------------~~~~~iRis~~~~-~~~~l~~~~~~l~ 380 (389)
T PRK05957 328 D--LNDFELVKQLIREYRVAVIPGTTFGM------------------------KNGCYLRIAYGAL-QKATAKEGIERLV 380 (389)
T ss_pred C--CChHHHHHHHHHHCCEEEccchhhCC------------------------CCCCEEEEEEecC-CHHHHHHHHHHHH
Confidence 1 4455554 555679999999854420 1123899999865 5677777777777
Q ss_pred Hhhhh
Q 037063 564 RFLDA 568 (588)
Q Consensus 564 ~~l~~ 568 (588)
++++.
T Consensus 381 ~~~~~ 385 (389)
T PRK05957 381 QGLKT 385 (389)
T ss_pred HHHHh
Confidence 76654
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=198.73 Aligned_cols=326 Identities=14% Similarity=0.122 Sum_probs=222.6
Q ss_pred CCeeeecCCCCC-CCCHHHHHHhhhhcccC-cCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHH
Q 037063 110 NNYVCFDYIGHG-LFSYSQMHSCSSNVHSS-AASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKR 187 (588)
Q Consensus 110 ~~~vyLD~a~~g-l~~~~~~~~~~~~~~~~-~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ 187 (588)
.+.++||.+... +.|+.+++++.+.+... ... |+.. . ..++|+.
T Consensus 26 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------Y~~~-~--~~~lr~~ 71 (356)
T PRK04870 26 TGMVKLDAMENPYRLPAELRAELGERLAEVALNR-------------------------------YPDP-R--AAALKAA 71 (356)
T ss_pred CCceeCcCCCCCCCCCHHHHHHHHHHhhcccccc-------------------------------CCCC-C--HHHHHHH
Confidence 467889877666 45777888876544210 100 1110 1 2589999
Q ss_pred HHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHH
Q 037063 188 IMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGK 267 (588)
Q Consensus 188 ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~ 267 (588)
|++++|.+++ ..|++|+|+++++.+++..+ .++||+|++....+. .....++..|++++.++++ +++.+|+++
T Consensus 72 ia~~~~~~~~-~~I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~----~~~~~~~~~g~~~~~i~~~-~~~~~d~~~ 144 (356)
T PRK04870 72 LRAAMGVPAG-ADVLLGNGSDELIQLLALAC-AKPGATVLAPEPGFV----MYRMSAKLAGLEFVGVPLT-ADFTLDLPA 144 (356)
T ss_pred HHHHhCcCCC-CcEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHH----HHHHHHHHcCCEEEEecCC-CCCCCCHHH
Confidence 9999998754 25999999999999999988 799999876654432 2245678899999999997 667899999
Q ss_pred HHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCc--CCCCCCCCCCCCCCCcEEEecc
Q 037063 268 LMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATAL--GSKDMDTLGLSLFKPDFLICSF 344 (588)
Q Consensus 268 l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~--~~~d~~~l~l~~~~~D~vv~S~ 344 (588)
|++.+.. .++++|++++++||||..+|.+++ ++++..+.++|+|++.. ......+ .+....--+++.|+
T Consensus 145 l~~~~~~-------~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~vi~~~S~ 216 (356)
T PRK04870 145 MLAAIAE-------HRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLP-RLARFPNLLVMRTV 216 (356)
T ss_pred HHHHhhc-------CCCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHH-HHhhCCCEEEEecc
Confidence 9999862 478999999999999999999999 77776688999999842 2111111 11222235788999
Q ss_pred CccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHH
Q 037063 345 YKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHAD 424 (588)
Q Consensus 345 ~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~ 424 (588)
+| +|.+..++|+++.++++++.+......+ . ...+.+ .+...+++...
T Consensus 217 SK-~~~~GlRiG~~i~~~~~i~~~~~~~~~~--~-------------------------~~~~~q----~~a~~~l~~~~ 264 (356)
T PRK04870 217 SK-LGLAGLRLGYLAGHPAWIAELDKVRPPY--N-------------------------VNVLTQ----ATALFALEHVD 264 (356)
T ss_pred hh-hhhHHHhhhhhhCCHHHHHHHHHccCCC--c-------------------------CCHHHH----HHHHHHHhCHH
Confidence 99 7743334999999888877665433110 0 000111 12233443322
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEe
Q 037063 425 ALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISL 504 (588)
Q Consensus 425 ~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v 504 (588)
. +++..+++++.++++.+.|..+ +++++. | ..+..+.+.+. +...+.+.|.++||.|
T Consensus 265 ~--~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~-~----~~~~~~~~~~~-------~~~~~~~~l~~~gI~v 321 (356)
T PRK04870 265 V--LDAQAAQLRAERTRLAAALAAL---------PGVTVF-P----SAANFILVRVP-------DAAAVFDGLKTRGVLV 321 (356)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHhC---------CCcEEC-C----CCCeEEEEECC-------CHHHHHHHHHHCCEEE
Confidence 2 4667777788888888888874 455553 2 23556666554 2566778889999999
Q ss_pred ccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 505 SCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 505 ~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
+.|.... . .+.++||+|++ +.+|+++|+++|+++|
T Consensus 322 ~~~~~f~----------------~--------~~~~~iRis~~---~~~~~~~l~~al~~~~ 356 (356)
T PRK04870 322 KNLSGMH----------------P--------LLANCLRVTVG---TPEENAQFLAALKAAL 356 (356)
T ss_pred EECCCCC----------------C--------CCCCeEEEeCC---CHHHHHHHHHHHHHhC
Confidence 8763210 0 11238999988 7899999999998764
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.3e-21 Score=201.26 Aligned_cols=287 Identities=14% Similarity=0.125 Sum_probs=202.0
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNL 261 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~ 261 (588)
.++|+.|++++|+++++ |++|+|+++++.+++.++ +++||+|++....+. .+ ...++..|++++.++. .++
T Consensus 70 ~~lr~~ia~~~~~~~~~--i~~t~G~~~~l~~~~~~l-~~~gd~vl~~~p~y~-~~---~~~~~~~g~~~~~~~~--~~~ 140 (367)
T PRK02731 70 FELKAALAEKFGVDPER--IILGNGSDEILELLARAY-LGPGDEVIYSEHGFA-VY---PIAAQAVGAKPVEVPA--KDY 140 (367)
T ss_pred HHHHHHHHHHhCcCHHH--EEEcCCHHHHHHHHHHHh-cCCCCEEEEecCCHH-HH---HHHHHHcCCeEEEecc--cCC
Confidence 48999999999997655 999999999999999998 889999776543332 23 2345678999999987 356
Q ss_pred ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHc--CcEEEEeCCCcCCC--C--CCCCCC-C
Q 037063 262 RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEK--GWHVLLDATALGSK--D--MDTLGL-S 333 (588)
Q Consensus 262 ~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~--g~~vvvDaa~~~~~--d--~~~l~l-~ 333 (588)
.+++++++++++ +++++|++++++|+||..+|+++| ++++.. |+++++|++..... + ...+.. .
T Consensus 141 ~~~~~~l~~~~~--------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 212 (367)
T PRK02731 141 GHDLDAMLAAVT--------PRTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVA 212 (367)
T ss_pred CCCHHHHHHHhC--------CCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHh
Confidence 789999999887 678999999999999999999999 888764 89999999843210 0 111111 1
Q ss_pred CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhH
Q 037063 334 LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSK 413 (588)
Q Consensus 334 ~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~ 413 (588)
...-.+++.|+.|.||.++.++|++++++++++.+...... + . .+. +
T Consensus 213 ~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~~~~------------------------~-~---~~~--~--- 259 (367)
T PRK02731 213 KFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQP------------------------F-N---VNS--L--- 259 (367)
T ss_pred hcCCEEEEeeehHhhcCcccceeeeeCCHHHHHHHHHccCC------------------------C-C---CCH--H---
Confidence 11234677799999885345679999998887766533210 0 0 010 1
Q ss_pred HHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHH
Q 037063 414 LVECKGLDHADAL-GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPAL 492 (588)
Q Consensus 414 ~al~~aL~~l~~~-G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~ 492 (588)
+...+++.++.. .++++.++.+.+.+++.+.|+++ ++.++ | ..++++.+.+.+. .+...
T Consensus 260 -~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~-~----~~g~~~~i~~~~~----~~~~~ 319 (367)
T PRK02731 260 -ALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAEL----------GLEYI-P----SVGNFILVDFDDG----KDAAE 319 (367)
T ss_pred -HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----------CCccC-C----CCceEEEEECCCC----CCHHH
Confidence 111223333221 15677778888888898888874 23333 2 2467777776321 45677
Q ss_pred HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCC-ccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 493 VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSG-VSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 493 v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g-~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+.+.|.++||.++.|.. .+ .++||+|++ +.+|+++++++|++++++
T Consensus 320 ~~~~L~~~gI~v~~~~~---------------------------~~~~~~iRis~~---~~~e~~~l~~aL~~~~~~ 366 (367)
T PRK02731 320 AYQALLKRGVIVRPVAG---------------------------YGLPNALRITIG---TEEENRRFLAALKEFLAA 366 (367)
T ss_pred HHHHHHHCCEEEEeCCC---------------------------CCCCCeEEEecC---CHHHHHHHHHHHHHHHhc
Confidence 77778889999987632 11 128999987 789999999999998764
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=196.75 Aligned_cols=282 Identities=13% Similarity=0.096 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
..++|+.|++++++++++ |++|+|+++++.+++. +++++.++....+. . ....++..|++++.++.+ ++
T Consensus 60 ~~~lr~aia~~~~~~~~~--I~it~Ga~~al~~~~~---l~~~~viv~~P~y~---~--~~~~~~~~G~~i~~v~~~-~~ 128 (349)
T PRK07908 60 ERRARAAVAARHGRTPDE--VLLLAGAAEGFALLAR---LRPRRAAVVHPSFT---E--PEAALRAAGIPVHRVVLD-PP 128 (349)
T ss_pred hHHHHHHHHHHhCcChhh--EEECCCHHHHHHHHHh---cCCCeEEEeCCCCh---H--HHHHHHHcCCEEEeeccC-cc
Confidence 358999999999998765 9999999999999988 45655454432221 2 235667789999999987 44
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCc--CCCCCCCC-CCCCCC
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATAL--GSKDMDTL-GLSLFK 336 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~--~~~d~~~l-~l~~~~ 336 (588)
+.++.+++ . ++++++++++++||||..+|.++| ++|+ ++.++|+|++.. .+-...++ .+ ...
T Consensus 129 ~~~d~~~l----~--------~~~~~i~l~np~NPTG~~~~~~~l~~l~~-~~~~iIvDe~y~~~~~~~~~~l~~~-~~~ 194 (349)
T PRK07908 129 FRLDPAAV----P--------DDADLVVIGNPTNPTSVLHPAEQLLALRR-PGRILVVDEAFADAVPGEPESLAGD-DLP 194 (349)
T ss_pred cCcChhHh----c--------cCCCEEEEcCCCCCCCCCcCHHHHHHHHh-cCCEEEEECcchhhccCCccccccc-cCC
Confidence 66777643 4 568899999999999999999999 8886 578899999853 22111111 11 111
Q ss_pred CcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHH
Q 037063 337 PDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVE 416 (588)
Q Consensus 337 ~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al 416 (588)
..+++.|++|.+|.+..++|++++++++++.+.+....+ ..++. .. +++
T Consensus 195 ~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~~-------------------------~~~~~---~~---~a~ 243 (349)
T PRK07908 195 GVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGRAHW-------------------------PVGTL---QL---EAI 243 (349)
T ss_pred CEEEEeecccccCCccceeeeeecCHHHHHHHHhcCCCC-------------------------CccHH---HH---HHH
Confidence 235666999999843455799999988887765433210 01111 11 122
Q ss_pred HHHHH--HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHH
Q 037063 417 CKGLD--HADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQ 494 (588)
Q Consensus 417 ~~aL~--~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~ 494 (588)
...++ .... ++++.++.+..++++.+.|.++ +++++.| ..+..+.+.+.+ .+.+.
T Consensus 244 ~~~~~~~~~~~--~~~~~~~~~~~r~~l~~~L~~~----------~~~~~~p----~~g~~~~~~~~~-------~~~~~ 300 (349)
T PRK07908 244 AACCAPRAVAE--AAADAARLAADRAEMVAGLRAV----------GARVVDP----AAAPFVLVRVPD-------AELLR 300 (349)
T ss_pred HHHhcccchHH--HHHHHHHHHHHHHHHHHHHHhC----------CcEeccC----CCceEEEEECCc-------HHHHH
Confidence 22221 1111 4667788888888999998873 3566654 235666666543 46788
Q ss_pred HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 495 KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 495 ~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+.|.++||.++.|..... .+..+||+|++ +.+|+++|+++|++++.+
T Consensus 301 ~~l~~~gI~v~~g~~f~~------------------------~~~~~vRis~~---~~~~~~~l~~al~~~~~~ 347 (349)
T PRK07908 301 KRLRERGIAVRRGDTFPG------------------------LDPDYLRLAVR---PRAEVPVLVQALAEILKA 347 (349)
T ss_pred HHHHhCCEEEEECCCCCC------------------------CCCCeEEEEeC---CCccHHHHHHHHHHHHhc
Confidence 888999999998743210 12239999986 789999999999998754
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-20 Score=200.12 Aligned_cols=357 Identities=15% Similarity=0.109 Sum_probs=229.7
Q ss_pred CCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCc--hhHHHHHHHHHHHHHhCCC
Q 037063 118 IGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSE--ESELESKIRKRIMDFMNIS 195 (588)
Q Consensus 118 a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~~~~~~~~r~~ia~~lga~ 195 (588)
++-...|+.+++++...+... |+ .+.+.++. |++. -.++++-++++.+++|++.
T Consensus 41 asen~~s~~v~~a~~s~~~~k-y~----------------------~G~~g~r~-~~G~~~~d~lE~~~~~~~~~~f~~~ 96 (475)
T PLN03226 41 ASENFTSRAVMEALGSCLTNK-YS----------------------EGLPGARY-YGGNEYIDQIETLCQKRALEAFRLD 96 (475)
T ss_pred cCCccCCHHHHHHHhhHHhcc-cc----------------------CCCCCCcC-cCCChhHHHHHHHHHHHHHHHhCCC
Confidence 777889999999986555221 11 11122222 2222 2566667788899999997
Q ss_pred CCCceEEE---ecCHHHHHHHHHHhCCCCCCCeEEE-cC---CCchhHHHHHHHHHHhcCC--EEEE--EeccCCCCccC
Q 037063 196 EDDYTLVF---TANQSSAFKLLAESYPFYSNPRLLT-VY---DHENEAAALMIESSKKRGA--RVSS--AEFAWPNLRIH 264 (588)
Q Consensus 196 ~~e~~vvf---t~g~T~al~lv~~s~~~~~gd~ll~-~~---e~~s~~~~~~~~~a~~~G~--~v~~--v~~~~~~~~i~ 264 (588)
++. +.+ ..+++.|+..++.++ +++||+|+. +. .|.+ +.++..-.+..+. .+.. ..++..++.+|
T Consensus 97 ~~~--~~~nv~~~SG~~AN~av~~aL-~~pgD~Il~~d~~~gGhl~--H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD 171 (475)
T PLN03226 97 PEK--WGVNVQPLSGSPANFAVYTAL-LQPHDRIMGLDLPHGGHLS--HGYQTDGKKISATSIYFESMPYRLDESTGLID 171 (475)
T ss_pred cce--eEEecCcCchHHHHHHHHHHh-CCCCCEEEECCCCcCcchh--hhhhhcccccccceEEEEeeeeeecCCCCCcC
Confidence 654 434 367788888899999 899999875 32 2221 2221111111122 2222 23344678899
Q ss_pred HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC---CCCCCCCCCCCCcEE
Q 037063 265 SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK---DMDTLGLSLFKPDFL 340 (588)
Q Consensus 265 ~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~---d~~~l~l~~~~~D~v 340 (588)
.++|++++.+ .++++|++. .+ .+|...|+++| ++|+++|++++||++|.++. +..+..+ ..+|++
T Consensus 172 ~d~Le~~l~~-------~~pklIv~~-~S-~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~--~~~Div 240 (475)
T PLN03226 172 YDKLEKKAML-------FRPKLIIAG-AS-AYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPF--EYCDVV 240 (475)
T ss_pred HHHHHHHHhh-------cCCeEEEEe-cC-cCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCC--CCCeEE
Confidence 9999999872 356776663 33 48999999999 99999999999999988872 1111111 249999
Q ss_pred EeccCccC-CCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHH
Q 037063 341 ICSFYKIF-GENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKG 419 (588)
Q Consensus 341 v~S~~K~~-G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~a 419 (588)
++++||+| | |.| |+++++++.++.+.+.. + +...... .......+.| .|++++..+ +++..|
T Consensus 241 ~~t~hK~L~G--P~G-g~I~~~~~~~~~~~~g~-~--~~~d~~~------~i~~a~~~~~--~g~p~~~~i---aal~aA 303 (475)
T PLN03226 241 TTTTHKSLRG--PRG-GMIFFRKGPKPPKGQGE-G--AVYDYED------KINFAVFPGL--QGGPHNHTI---AALAVA 303 (475)
T ss_pred EecCcccccC--CCc-eEEEEchhhcccccCCC-c--cHHHHHH------HhccccCCcc--CCCchHHHH---HHHHHH
Confidence 99999977 6 888 88888887654433221 1 1101000 0000000123 455776665 888999
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHh
Q 037063 420 LDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADR 499 (588)
Q Consensus 420 L~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~ 499 (588)
|+++.+.|.+.+.+++..++++|.+.|.++ +++++++.. ...++.+.+... | ++...+.+.|++
T Consensus 304 l~~i~~~~~~~~~~~~~~na~~L~~~L~~~----------G~~l~~~~t---~~hi~lv~~~~~-g--i~~~~~~~~L~~ 367 (475)
T PLN03226 304 LKQAMTPEFKAYQKQVKANAAALANRLMSK----------GYKLVTGGT---DNHLVLWDLRPL-G--LTGSRVEKVLDL 367 (475)
T ss_pred HHHHhCcCHHHHHHHHHHHHHHHHHHHHhC----------CCEEEcCCC---CCCEEEEEccCC-C--CCHHHHHHHHHH
Confidence 999998899999999999999999999874 577776532 235555554321 1 678889999999
Q ss_pred CCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe----cCCCCCHHHHHHHHHHHHHhhhh
Q 037063 500 HNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA----LGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 500 ~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS----lg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.||.+-.+.. |+... ....+.||+. ...-.+++|++++.++|.+.|+.
T Consensus 368 ~~I~~nk~~~--p~~~~-------------------~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 368 AHITLNKNAV--PGDSS-------------------ALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred CCCEECCCCC--CCCcc-------------------cCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 9999865531 11000 0111256662 23445889999999999999984
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-20 Score=196.29 Aligned_cols=334 Identities=13% Similarity=0.089 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
...+++|+.+++++|++ + .++++|+|+|+.+++.++.+++||+|++ ...|++ . ...++..|+++++++++
T Consensus 29 ~~~~~le~~la~~~g~~---~-~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~-~----~~~~~~~G~~~~~~~~~ 99 (380)
T TIGR03588 29 PTVPAFEEALAEYVGAK---Y-AVAFNSATSALHIACLALGVGPGDRVWTTPITFVA-T----ANCALYCGAKVDFVDID 99 (380)
T ss_pred hhHHHHHHHHHHHHCCC---e-EEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHH-H----HHHHHHcCCEEEEEecC
Confidence 34578999999999994 3 4556689999999999988899999765 445543 2 34456789999999997
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC--CCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK--DMDTLGLSL 334 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~--d~~~l~l~~ 334 (588)
..++.+|++++++.|++ ...+++++|++.+ ++|...|+++| ++|+++|++||+|++|+.+. +..+++...
T Consensus 100 ~~~~~~d~~~l~~~i~~----~~~~~t~~v~~~~---~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~ 172 (380)
T TIGR03588 100 PDTGNIDEDALEKKLAA----AKGKLPKAIVPVD---FAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCR 172 (380)
T ss_pred CCcCCcCHHHHHHHhhc----ccCCCceEEEEeC---CCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCcc
Confidence 55678999999999972 1124688888655 58999999999 99999999999999998872 223333100
Q ss_pred CCCcEEEeccC--ccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC----Cc
Q 037063 335 FKPDFLICSFY--KIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES----SI 407 (588)
Q Consensus 335 ~~~D~vv~S~~--K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~----~~ 407 (588)
..|+.++|+| |+++. +. .|+++.+ +++.++++....++ ....... .......+ ..| +.++. .+
T Consensus 173 -~~d~~~~S~~~~K~~~~-~~-GG~v~~~~~~~~~~~~~~~~~g-~~~~~~~----~~~~~~~~-~~~-~~~~~g~n~~m 242 (380)
T TIGR03588 173 -YADATVFSFHPVKIITT-AE-GGAVTTNDEELAERMRLLRSHG-ITKDPLL----FEKQDEGP-WYY-EQQELGFNYRM 242 (380)
T ss_pred -ccceEEEecCCCCcccc-cC-ceEEEECCHHHHHHHHHHHHCC-CCCCccc----ccccccCc-cee-eeeccccccCc
Confidence 1399999999 88874 44 3555554 44555555432221 0000000 00000000 022 22221 11
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc-cEEEEEeecCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG-PSLAFNVFDWNGT 486 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg-~iv~f~~~~~~g~ 486 (588)
..+ . ...++..++. ++.+.++.+++++++.+.|.++ +.++++.+....... ....+.+....|
T Consensus 243 ~~l---~-aa~g~~qL~~--l~~~~~~r~~~~~~~~~~L~~~---------~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 306 (380)
T TIGR03588 243 TDI---Q-AALGLSQLKK--LDRFVAKRREIAARYDRLLKDL---------PYFTPLTIPLGSKSAWHLYPILLDQEFG- 306 (380)
T ss_pred cHH---H-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCC---------CCccCCCCCCCCEeEEEEEEEEECCcCC-
Confidence 221 1 1234445555 5888999999999999999875 555554432111111 122222322122
Q ss_pred CcCHHHHHHHHHhCCcEeccccccCcc---cccchH---HHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHH
Q 037063 487 RIDPALVQKLADRHNISLSCGFLQNIF---FSGEYE---QERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 487 ~i~~~~v~~~l~~~gI~v~~G~~c~~~---~~~~~~---~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~ 560 (588)
++.+.+.+.|.++||.++..+.+... +...+. -.....+. ...|++.+|...|.+||+++++
T Consensus 307 -~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~-----------~~~l~lP~~~~l~~~dv~~i~~ 374 (380)
T TIGR03588 307 -CTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFY-----------LAEISLPLHPALTLEQQQRVVE 374 (380)
T ss_pred -CCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHH-----------hceEEcCCCCCCCHHHHHHHHH
Confidence 56788999999999998866433110 000000 00011111 1289999999999999999999
Q ss_pred HHHHhh
Q 037063 561 FVSRFL 566 (588)
Q Consensus 561 ~l~~~l 566 (588)
.|+++|
T Consensus 375 ~l~~~~ 380 (380)
T TIGR03588 375 TLRKVL 380 (380)
T ss_pred HHHHhC
Confidence 999875
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-20 Score=197.34 Aligned_cols=300 Identities=10% Similarity=0.052 Sum_probs=202.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcC-CCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVY-DHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~-e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++.+++++.+++++|++ + .|++|+| ++++..++.++ +++||+|++.. .|++ .. ..++..|+++..++.
T Consensus 86 ~~l~~~l~~~la~~~g~~-~--~i~~tsG-~~a~~~~~~~l-~~~gd~vi~~~~~~~~-~~----~~~~~~~~~~~~~~~ 155 (397)
T PRK06939 86 QDLHKELEEKLAKFLGTE-D--AILYSSC-FDANGGLFETL-LGKEDAIISDALNHAS-II----DGVRLCKAKRYRYAN 155 (397)
T ss_pred cHHHHHHHHHHHHHhCCC-c--EEEEcCh-HHHHHHHHHHh-CCCCCEEEEEhhhhHH-HH----HHHHhcCCceEEeCC
Confidence 467789999999999974 3 4888887 77888888888 89999976544 4443 22 234556888776653
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC---C----CC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK---D----MD 328 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~---d----~~ 328 (588)
.|.+++++.+++. .....++++|+..++.|++|...++++| ++|+++|+++|+|+++..+. + ..
T Consensus 156 ------~d~~~l~~~i~~~--~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~ 227 (397)
T PRK06939 156 ------NDMADLEAQLKEA--KEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVE 227 (397)
T ss_pred ------CCHHHHHHHHHhh--hccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHH
Confidence 4788888888620 0011378899999999999999999999 99999999999999985431 1 01
Q ss_pred CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 329 TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
..++. ..+|++++|++|+++. + .+|++++++++++.+...... . . -.++.+..
T Consensus 228 ~~~~~-~~~~i~~~S~sK~~~g-~-r~G~v~~~~~~~~~l~~~~~~--~--------------------~--~~~~~~~~ 280 (397)
T PRK06939 228 HFGVM-DRVDIITGTLGKALGG-A-SGGYTAGRKEVIDWLRQRSRP--Y--------------------L--FSNSLAPA 280 (397)
T ss_pred HcCCC-CCCcEEEEECHHHhCc-c-CceEEEeCHHHHHHHHHhCcc--c--------------------c--ccCCCCHH
Confidence 11221 2479999999998852 5 469999998887766532110 0 0 01121111
Q ss_pred chhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 409 GVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
. .+++.++++++.. .+.+.++.+++++++++.|.++ | +++..+ .++++.+.+.+. .
T Consensus 281 ~---~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~-------~---~~~~~~-----~~~~~~~~~~~~----~ 336 (397)
T PRK06939 281 I---VAASIKVLELLEE--SDELRDRLWENARYFREGMTAA-------G---FTLGPG-----EHPIIPVMLGDA----K 336 (397)
T ss_pred H---HHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-------C---CCcCCC-----CCCEEEEEECCH----H
Confidence 1 1444566777654 2677888899999999999875 2 222222 345555444321 2
Q ss_pred CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 489 DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 489 ~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+...+.+.|.++||.+..+.+... ..+...||++++++++.+||+++++.|++++++
T Consensus 337 ~~~~~~~~L~~~gI~v~~~~~~~~-----------------------~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~ 393 (397)
T PRK06939 337 LAQEFADRLLEEGVYVIGFSFPVV-----------------------PKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKE 393 (397)
T ss_pred HHHHHHHHHHHCCceEeeeCCCCC-----------------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 345566666666999875432100 012238999999999999999999999998766
Q ss_pred h
Q 037063 569 D 569 (588)
Q Consensus 569 ~ 569 (588)
.
T Consensus 394 ~ 394 (397)
T PRK06939 394 L 394 (397)
T ss_pred h
Confidence 4
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-21 Score=201.03 Aligned_cols=282 Identities=10% Similarity=0.058 Sum_probs=191.1
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCC-CeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSN-PRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~g-d~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
.++|+.+++++|+++++ |++|+|+++++.+++.++ .++| |+|++....+. . + ...++..|++++.+|.+ .+
T Consensus 63 ~~Lr~aia~~~~~~~~~--I~it~Gs~~~i~~~~~~~-~~~g~d~vlv~~P~y~-~--y-~~~~~~~g~~v~~v~~~-~~ 134 (354)
T PRK04635 63 PELINAYSAYAGVAPEQ--ILTSRGADEAIELLIRAF-CEPGQDSIACFGPTYG-M--Y-AISAETFNVGVKALPLT-AD 134 (354)
T ss_pred HHHHHHHHHHhCcCHHH--EEEeCCHHHHHHHHHHHh-cCCCCCeEEEcCCChH-H--H-HHHHHHcCCEEEEEecC-CC
Confidence 58999999999998876 999999999999999999 7888 78776554432 1 2 34567889999999997 55
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH-cCcEEEEeCCCcCC-CCCCCCCC-CCCC
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE-KGWHVLLDATALGS-KDMDTLGL-SLFK 336 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~-~g~~vvvDaa~~~~-~d~~~l~l-~~~~ 336 (588)
+.++.+.++ .+ +++++|++++++||||..+|.+++ ++++. .+++||+|++..-- .+....++ ...+
T Consensus 135 ~~~~~~~l~-~~---------~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~ 204 (354)
T PRK04635 135 YQLPLDYIE-QL---------DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYP 204 (354)
T ss_pred CCCCHHHHH-hc---------cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCC
Confidence 678888776 22 478999999999999999999999 88776 37999999984221 00010111 1111
Q ss_pred CcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHH
Q 037063 337 PDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVE 416 (588)
Q Consensus 337 ~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al 416 (588)
-=+++.|++|+||.++.++|++++++++++.+....... + .+ . ...
T Consensus 205 ~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~~l~~~~~~~-~---------------------------~~--~----~~~ 250 (354)
T PRK04635 205 NLVVLRTLSKAFALAGARCGFTLANEELIEILMRVIAPY-P---------------------------VP--L----PVS 250 (354)
T ss_pred CEEEEechHHHhhhhHHHHhhhhCCHHHHHHHHhhcCCC-C---------------------------CC--H----HHH
Confidence 235788999999854455899999998887665332110 0 00 0 011
Q ss_pred HHHHHHHHHhCHHHHH---HHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHH
Q 037063 417 CKGLDHADALGLILIS---NRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALV 493 (588)
Q Consensus 417 ~~aL~~l~~~G~~~i~---~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v 493 (588)
..++..+...|.+.+. ++++..++++.+.|.++ ++++++.+ .+..+.+.+. +...+
T Consensus 251 ~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~---------~~~~~~~~-----~g~f~~~~~~-------~~~~~ 309 (354)
T PRK04635 251 EIATQALSEAGLARMKFQVLDLNAQGARLQAALSMY---------GGAKVLEG-----NGNYVLAKFD-------DVDAV 309 (354)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC---------CCceECCC-----CCcEEEEECC-------CHHHH
Confidence 2334444433444443 34455567888888874 34666543 2444444433 25667
Q ss_pred HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 494 QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 494 ~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
.+++.++||.++.+. .. .+.++||+|++ +.||+++|+++|++.
T Consensus 310 ~~~l~~~gv~v~~~~--~~------------------------~~~~~lRis~~---~~e~~~~l~~al~~~ 352 (354)
T PRK04635 310 FKALWDAGIVARAYK--DP------------------------RLANCIRFSFS---NRAETDKLIGLIRNQ 352 (354)
T ss_pred HHHHHHCCEEEEECC--CC------------------------CCCCeEEEEeC---CHHHHHHHHHHHHHh
Confidence 788889999997531 00 11128999976 899999999998764
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-21 Score=198.40 Aligned_cols=294 Identities=17% Similarity=0.119 Sum_probs=200.5
Q ss_pred HHHHHHHHHhCCC----CCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 183 KIRKRIMDFMNIS----EDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 183 ~~r~~ia~~lga~----~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
++++.++++++.. .....+++++|+|+++..++.++ .++|++|++....+.+. ...++..|.+++.++.+
T Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~-~~~g~~vl~~~~~~~~~----~~~~~~~~~~~~~i~~~- 113 (350)
T cd00609 40 ELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRAL-LNPGDEVLVPDPTYPGY----EAAARLAGAEVVPVPLD- 113 (350)
T ss_pred HHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHh-CCCCCEEEEcCCCchhH----HHHHHHCCCEEEEEecc-
Confidence 4555555555543 22345999999999999999999 78899976544433212 34567789999999997
Q ss_pred CCCccCH--HHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcCCCC--CCC-
Q 037063 259 PNLRIHS--GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALGSKD--MDT- 329 (588)
Q Consensus 259 ~~~~i~~--e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~~~d--~~~- 329 (588)
.++.++. +.++..+. +++++|++++++|+||...|++++ ++|+++|+++++|+++..... ...
T Consensus 114 ~~~~~~~~~~~~~~~~~--------~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~ 185 (350)
T cd00609 114 EEGGFLLDLELLEAAKT--------PKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPP 185 (350)
T ss_pred cccCCccCHHHHHhhcC--------ccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccc
Confidence 4444443 45554444 789999999999999999998775 589999999999999765310 010
Q ss_pred --CCCCCCCCcEEEeccCccCCCCCCceEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 330 --LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 330 --l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
........|+++.|++|++|.++.++|++++++ ++.+.++..... ..++++
T Consensus 186 ~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~--------------------------~~~~~~ 239 (350)
T cd00609 186 ALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPY--------------------------TTSGPS 239 (350)
T ss_pred cccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHh--------------------------cccCCC
Confidence 223345589999999998874356799999998 666655432210 112233
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGT 486 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~ 486 (588)
.... .++..+|+... .+++++.+++..+++++.+.|.++ +...+..+ ..+.++.+.+.+.
T Consensus 240 ~~~~---~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~~----~~g~~~~~~~~~~--- 299 (350)
T cd00609 240 TLSQ---AAAAAALDDGE-EHLEELRERYRRRRDALLEALKEL---------GPLVVVKP----SGGFFLWLDLPEG--- 299 (350)
T ss_pred hHHH---HHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhc---------CCccccCC----CccEEEEEecCCC---
Confidence 3332 34455555443 247888999999999999999985 22222111 3455555665542
Q ss_pred CcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 487 RIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 487 ~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
.....+.+++.++||.++.+..+.. .+..+||++++.. .|||++++++|+
T Consensus 300 -~~~~~~~~~l~~~gi~i~~~~~~~~------------------------~~~~~iRi~~~~~--~~~i~~~~~al~ 349 (350)
T cd00609 300 -DDEEFLERLLLEAGVVVRPGSAFGE------------------------GGEGFVRLSFATP--EEELEEALERLA 349 (350)
T ss_pred -ChHHHHHHHHHhCCEEEeccccccc------------------------CCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence 2466788899999999987643310 1223999999987 999999999975
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=197.78 Aligned_cols=300 Identities=13% Similarity=0.061 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCC-CCCeEEEcCC-CchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFY-SNPRLLTVYD-HENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~-~gd~ll~~~e-~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
..++|+.|+++++.+ . +++++++|+++.+++.++ .. +||+|++... |.+ .+.. ...++..|++++.++.+
T Consensus 42 ~~~l~~~la~~~~~~--~--~~~~~~Gs~a~~~~l~~~-~~~~gd~Vl~~~~~~~~-~~~~-~~~~~~~g~~~~~v~~~- 113 (353)
T PLN02721 42 ALRLEEEMAKIFGKE--A--ALFVPSGTMGNLISVLVH-CDVRGSEVILGDNSHIH-LYEN-GGISTLGGVHPRTVKNN- 113 (353)
T ss_pred HHHHHHHHHHHhCCc--e--eEEecCccHHHHHHHHHH-ccCCCCeEEEcCcccee-hhcc-cchhhhcCceeEecCCC-
Confidence 578999999999984 2 567777787766777766 44 8999775543 432 2211 01456789999999987
Q ss_pred CCCccCHHHHHHHHhhhccccCCCcceEEEEeCC-CCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcCCC-CCCCCCC
Q 037063 259 PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQ-SKVTGARYS---YMWM-SVAAEKGWHVLLDATALGSK-DMDTLGL 332 (588)
Q Consensus 259 ~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~-sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~~-d~~~l~l 332 (588)
+++.+|+++++++|++. .....+++++|+++++ +|++|..+| +++| ++|+++|+++++|+++.... .....+.
T Consensus 114 ~~~~~d~~~l~~~i~~~-~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~ 192 (353)
T PLN02721 114 EDGTMDLDAIEAAIRPK-GDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPV 192 (353)
T ss_pred cCCCcCHHHHHHHHHhc-cCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCH
Confidence 67789999999999721 0111147899999775 677999998 4577 88999999999999865431 0001111
Q ss_pred C--CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 333 S--LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 333 ~--~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
. ...+|+++.|+||+++. |.| |+++.++++++.+...... ..|+....+.
T Consensus 193 ~~~~~~~d~~~~s~sK~l~~-~~G-~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~ 244 (353)
T PLN02721 193 HRLVKAADSVSVCLSKGLGA-PVG-SVIVGSKSFIRKAKRLRKT--------------------------LGGGMRQVGV 244 (353)
T ss_pred HHHhhhCCEEEEecccccCC-cee-eEEecCHHHHHhHHHHHHh--------------------------cCCCeehhHH
Confidence 1 12489999999998884 544 4566677776654332110 0011111111
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEE-eCCCCCCCcccEEEEEeecCCCCCcC
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRI-YGPKVMFDRGPSLAFNVFDWNGTRID 489 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i-~~p~~~~~rg~iv~f~~~~~~g~~i~ 489 (588)
.+ ..++..++.. ++.+ ++...+++++.+.|.++ +++++ +.+ ..++++.+.+.... ..+
T Consensus 245 ---~~-~~~~~~l~~~-~~~~-~~~~~~~~~l~~~L~~~---------~~~~~~~~~----~~~~~~~~~~~~~~--~~~ 303 (353)
T PLN02721 245 ---LA-AAALVALQEN-VPKL-EDDHKKAKLLAEGLNQI---------KGLRVNVAA----VETNIVYFDITDGS--RIT 303 (353)
T ss_pred ---HH-HHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHhC---------CCcEEecCC----ccceEEEEEccCCc--ccc
Confidence 11 1222222221 2222 33356778899999874 44543 322 23567777765411 134
Q ss_pred HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 490 PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 490 ~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
...+.+.|.++||.++.+. . ..||++++++++.+|+++++++|+++++.
T Consensus 304 ~~~~~~~L~~~gi~v~~~~----------------------------~--~~lR~~~~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 304 AEKLCKSLEEHGVLLMPGN----------------------------S--SRIRVVTHHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred HHHHHHHHHhCCcEEecCC----------------------------C--ceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence 5677777789999998651 1 18999999999999999999999987753
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-21 Score=200.97 Aligned_cols=280 Identities=12% Similarity=0.093 Sum_probs=190.0
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCC-CeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSN-PRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~g-d~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
.++++.+++++|+++++ |++|+|+++++.+++.++ +++| ++|++....+. . ....++..|++++.++.+ ++
T Consensus 60 ~~l~~~~a~~~g~~~~~--I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~P~y~-~---y~~~~~~~G~~~~~v~~~-~~ 131 (351)
T PRK01688 60 KAVIENYAAYAGVKPEQ--VLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYG-M---YSVSAETIGVEIRTVPTL-DN 131 (351)
T ss_pred HHHHHHHHHHhCCCHHH--EEEcCCHHHHHHHHHHHh-cCCCCCEEEEcCCCHH-H---HHHHHHHcCCEEEEeecC-CC
Confidence 58999999999998876 999999999999999998 8887 77776544332 1 245667789999999987 56
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH--cCcEEEEeCCC--cCCC-CCCCCCCCC
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE--KGWHVLLDATA--LGSK-DMDTLGLSL 334 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~--~g~~vvvDaa~--~~~~-d~~~l~l~~ 334 (588)
+.+|.+++++++. ++++|++++++||||..++.+++ ++++. .+++||+|.+. +.+. .+..+ +..
T Consensus 132 ~~~d~~~l~~~~~---------~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~-~~~ 201 (351)
T PRK01688 132 WQLDLPAIADNLD---------GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGW-LAE 201 (351)
T ss_pred CCCCHHHHHHhcc---------CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHH-Hhh
Confidence 7889999987663 68999999999999999999998 66543 26789999983 2221 01111 122
Q ss_pred CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHH
Q 037063 335 FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKL 414 (588)
Q Consensus 335 ~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~ 414 (588)
++--+++.||+|.||.++.++|+++.++++++.+......+ . .+ ..
T Consensus 202 ~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l~~~~~~~--~--------------------------v~--~~---- 247 (351)
T PRK01688 202 YPHLVILRTLSKAFALAGLRCGFTLANEEVINLLLKVIAPY--P--------------------------LS--TP---- 247 (351)
T ss_pred CCCEEEEecchHhhcCHHHHHhHHhCCHHHHHHHHhccCCC--C--------------------------CC--HH----
Confidence 22347888999999954445799999988887665433110 0 00 00
Q ss_pred HHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHH
Q 037063 415 VECKGLDHADALG---LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPA 491 (588)
Q Consensus 415 al~~aL~~l~~~G---~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~ 491 (588)
+...|...+...+ +++..+++...++++.+.|.++ ++++.+.| ..+..+.+.+.+ .+
T Consensus 248 ~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~---------~~~~~~~p----s~~nfi~~~~~~-------~~ 307 (351)
T PRK01688 248 VADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEI---------PCVEQVFD----SETNYILARFTA-------SS 307 (351)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhC---------CCCCeECC----CCCcEEEEEcCC-------HH
Confidence 1112222332212 2334455556678888888874 44432333 234555555432 56
Q ss_pred HHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCc-cEEEEecCCCCCHHHHHHHHHHH
Q 037063 492 LVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGV-SVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 492 ~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~-~~vRvSlg~~~t~eDv~~li~~l 562 (588)
.+.+.|.++||.++.+..+ .|. +++|||+| +.+|+++|+++|
T Consensus 308 ~l~~~L~~~gi~vr~~~~~--------------------------~~~~~~iRis~~---~~~e~~~l~~al 350 (351)
T PRK01688 308 AVFKSLWDQGIILRDQNKQ--------------------------PGLSNCLRITIG---TREECQRVIDAL 350 (351)
T ss_pred HHHHHHHHCCeEEEECCCc--------------------------CCCCCeEEEeCC---CHHHHHHHHHhh
Confidence 6777777899999865221 111 28999999 789999999986
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-20 Score=198.67 Aligned_cols=166 Identities=13% Similarity=0.115 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+++++++++++|++ + +++|+|+++|+.+++.++ +++||+|++ ...|.+ .+..+...++..|+++++++.
T Consensus 60 ~p~~~~le~~la~l~g~~--~--~v~~ssG~~Ai~~al~al-~~~Gd~Vi~~~~~y~~-t~~~~~~~~~~~G~~v~~vd~ 133 (390)
T PRK08133 60 NPTVTMFQERLAALEGAE--A--CVATASGMAAILAVVMAL-LQAGDHVVSSRSLFGS-TVSLFEKIFARFGIETTFVDL 133 (390)
T ss_pred ChHHHHHHHHHHHHhCCC--c--EEEECCHHHHHHHHHHHH-hCCCCEEEEccCcchh-HHHHHHHHHHHcCcEEEEECC
Confidence 455789999999999984 3 788999999999999988 899999765 445554 444445566788999999976
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ +.++++++|+ ++|++|++.+++|++|...|+++| ++|+++|+++++|++...+....++. .
T Consensus 134 ~------d~~~l~~~i~--------~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~pl~---~ 196 (390)
T PRK08133 134 T------DLDAWRAAVR--------PNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPLK---L 196 (390)
T ss_pred C------CHHHHHHhcC--------cCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCchh---h
Confidence 4 6788998887 789999999999999999999999 99999999999999976663222322 2
Q ss_pred CCcEEEeccCccCCCCCCc--e-EEEEEeCcchhcc
Q 037063 336 KPDFLICSFYKIFGENPSG--F-GCLFVKKSSASVL 368 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G--~-G~L~v~~~~~~~l 368 (588)
++|+++.|++|++| +.| + |+++.+++.++++
T Consensus 197 g~Divv~S~sK~~~--g~g~~~GG~vv~~~~~~~~~ 230 (390)
T PRK08133 197 GADVVIHSATKYLD--GQGRVLGGAVVGSKELMEEV 230 (390)
T ss_pred CCcEEEeecceeec--CCcceEeEEEEcCHHHHHHH
Confidence 38999999999888 444 4 5666666655444
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-20 Score=199.39 Aligned_cols=342 Identities=12% Similarity=0.054 Sum_probs=225.6
Q ss_pred CCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCc--hhHHHHHHHHHHHHHhCCC
Q 037063 118 IGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSE--ESELESKIRKRIMDFMNIS 195 (588)
Q Consensus 118 a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~~~~~~~~r~~ia~~lga~ 195 (588)
++-..+|+.+++++...+.... + .+.+.. .+|++. -.+++.-+.++..++||++
T Consensus 56 asEN~~s~~v~~a~~s~l~nky-----a------------------eg~pg~-ryy~g~~~~d~ie~l~~~ra~~lf~a~ 111 (493)
T PRK13580 56 ASENYSSLAVQLAMGNLLTDKY-----A------------------EGTPGH-RFYAGCQNVDTVEWEAAEHAKELFGAE 111 (493)
T ss_pred cccccCCHHHHHHhcccccccC-----c------------------CCCCCc-cccCCCchHHHHHHHHHHHHHHHhCCC
Confidence 7778899999998755443221 1 111221 223333 2788888999999999996
Q ss_pred CCCceEEEecCHHHHHHHHHHhCCCCC-------------------------------CCeEEE-cC---CCchhHHHHH
Q 037063 196 EDDYTLVFTANQSSAFKLLAESYPFYS-------------------------------NPRLLT-VY---DHENEAAALM 240 (588)
Q Consensus 196 ~~e~~vvft~g~T~al~lv~~s~~~~~-------------------------------gd~ll~-~~---e~~s~~~~~~ 240 (588)
. .-|=--+++.|+..+..++ ++| ||+|+. +. +|-+ +.+.
T Consensus 112 ~---anvqp~Sg~~An~~v~~al-l~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlt--hg~~ 185 (493)
T PRK13580 112 H---AYVQPHSGADANLVAFWAI-LAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLT--HGFR 185 (493)
T ss_pred c---ccccCCCcHHHHHHHHHHH-hcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeee--cCcc
Confidence 3 3344456677777777777 655 688662 22 2211 1010
Q ss_pred HHHHHhcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeC
Q 037063 241 IESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDA 319 (588)
Q Consensus 241 ~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDa 319 (588)
..+ .....+++..+++..++.+|.+++++.+. +++++|++++.||. |...|+++| ++|+++|++++||+
T Consensus 186 ~n~-~~~~~~~~~y~vd~~~g~iD~d~l~~~~~--------~~~plvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~ 255 (493)
T PRK13580 186 PNI-SGKMFHQRSYGVDPDTGLLDYDEIAALAR--------EFKPLILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDM 255 (493)
T ss_pred cch-hhheeeeEecccCcccCccCHHHHHHHHh--------hcCCEEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEEC
Confidence 111 11234666667775678999999999998 78899999999999 558899999 99999999999999
Q ss_pred CCcCCC---CCCC--CCCCCCCCcEEEeccCccC-CCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccc
Q 037063 320 TALGSK---DMDT--LGLSLFKPDFLICSFYKIF-GENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELET 393 (588)
Q Consensus 320 a~~~~~---d~~~--l~l~~~~~D~vv~S~~K~~-G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~ 393 (588)
+|.+|. +... ++. ...+||+++|+||.| | |.| |++++++++++.+.... .
T Consensus 256 AH~~Gligg~~~~~~~~~-~~~~D~vtgT~hKaL~G--P~G-G~I~~~~~l~~~L~~a~-P------------------- 311 (493)
T PRK13580 256 AHFAGLVAGKVFTGDEDP-VPHADIVTTTTHKTLRG--PRG-GLVLAKKEYADAVDKGC-P------------------- 311 (493)
T ss_pred chhhceeccccchhhcCC-CCCCcEEEeCChhhccC--CCe-EEEEecHHHHHHHhhCC-C-------------------
Confidence 999872 1110 111 125899999999966 7 886 99999998877663111 0
Q ss_pred ccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc
Q 037063 394 LDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG 473 (588)
Q Consensus 394 ~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg 473 (588)
| -.|++..+.+ ++...++..+.+-+.....+++..++++|.+.|.++ | +.+.... ..+
T Consensus 312 -----~-i~gg~l~p~i---AA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~-------G---~~vv~gg---Tds 369 (493)
T PRK13580 312 -----L-VLGGPLPHVM---AAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKR-------G---ARLVTGG---TDN 369 (493)
T ss_pred -----c-ccCCCccHHH---HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhc-------C---CCccCCC---CCC
Confidence 0 1223333333 555566666654344668899999999999999985 3 3343221 246
Q ss_pred cEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC---
Q 037063 474 PSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT--- 550 (588)
Q Consensus 474 ~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~--- 550 (588)
+|+.+.+.+.+ +....+.+.|.+.||.+..- .-|..... ..-...||+++..++
T Consensus 370 hIV~V~lg~~~---~~g~~a~~~L~e~GI~vn~i--~~Ptvp~g------------------~~~~srLRIg~~A~ttrg 426 (493)
T PRK13580 370 HLVLIDVTSFG---LTGRQAESALLDAGIVTNRN--SIPSDPNG------------------AWYTSGIRLGTPALTTLG 426 (493)
T ss_pred CEEEEEeCCHH---HHHHHHHHHHHHCCeEEccc--cCCCCCCC------------------CCCCceEEeccchhhhcC
Confidence 89988886522 33446778899999987532 11110000 011238999998855
Q ss_pred -CHHHHHHHHHHHHHhhhh
Q 037063 551 -NFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 551 -t~eDv~~li~~l~~~l~~ 568 (588)
+++||++++++|.+.++.
T Consensus 427 ~teedi~~iad~l~~~l~~ 445 (493)
T PRK13580 427 MGSDEMDEVAELIVKVLSN 445 (493)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 599999999999998864
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-20 Score=202.73 Aligned_cols=262 Identities=15% Similarity=0.087 Sum_probs=180.4
Q ss_pred hHHHHHHHHHHHHHhCCC-----------CCCceEEEecCHHHHHHHHHHh---CCCC----------------------
Q 037063 178 SELESKIRKRIMDFMNIS-----------EDDYTLVFTANQSSAFKLLAES---YPFY---------------------- 221 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~-----------~~e~~vvft~g~T~al~lv~~s---~~~~---------------------- 221 (588)
.+++.++-++++++++.. ++...-+||+|+|+|+-..+.. ..+.
T Consensus 128 t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~ 207 (522)
T TIGR03799 128 TPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGY 207 (522)
T ss_pred HHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccC
Confidence 688889999999998532 2233479999999986543222 1011
Q ss_pred CCCeEE-EcCCCchhHHHHHHHHHHhcCC---EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEe--CCCCC
Q 037063 222 SNPRLL-TVYDHENEAAALMIESSKKRGA---RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFP--LQSKV 295 (588)
Q Consensus 222 ~gd~ll-~~~e~~s~~~~~~~~~a~~~G~---~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~--~~sn~ 295 (588)
++..|+ +..+|+| + .+.++..|. +++.||++ +++++|+++|+++|.+. ...+++++++. +.++.
T Consensus 208 ~~~~v~~S~~~H~S--~---~kaa~~lglg~~~v~~vp~d-~~g~~d~~~L~~~i~~~----~~~g~~~~~vvataGtt~ 277 (522)
T TIGR03799 208 DGLAILVSERGHYS--L---GKAADVLGIGRDNLIAIKTD-ANNRIDVDALRDKCAEL----AEQNIKPLAIVGVAGTTE 277 (522)
T ss_pred CceEEEECCCchHH--H---HHHHHHcCCCcccEEEEEeC-CCCcCCHHHHHHHHHHH----HHCCCCcEEEEEEecCcC
Confidence 122344 4566765 2 355666777 89999998 78999999999999731 11345555555 55779
Q ss_pred CCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCC-C--CCCC-CCCcEEEeccCccCCCCCCceEEEEEeCcc-hhccc
Q 037063 296 TGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDT-L--GLSL-FKPDFLICSFYKIFGENPSGFGCLFVKKSS-ASVLS 369 (588)
Q Consensus 296 tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~-l--~l~~-~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~-~~~l~ 369 (588)
||.+.|+++| ++|+++|++++||||+.++.-+.+ . .+.. .++|++++|+|||++. |.|+|+|++|+.. .+.+.
T Consensus 278 tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~-P~g~G~llvr~~~~~~~~~ 356 (522)
T TIGR03799 278 TGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYV-PMGAGMVLFKDPALMSAIE 356 (522)
T ss_pred CCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCc-CcccEEEEEeCHHHHHHhc
Confidence 9999999999 999999999999999876521111 0 0222 2599999999996654 9999999999753 34443
Q ss_pred CC--CCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 037063 370 GS--TSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALM 447 (588)
Q Consensus 370 ~~--~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~ 447 (588)
+. +....+.. ++ .+ ..+ + ||.+..+ ..+..+|+++...|++.+.++...|++++.+.|.
T Consensus 357 ~~~~Yl~~~~~~----------d~--~~-~~l-e-gsR~~~a----l~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~ 417 (522)
T TIGR03799 357 HHAEYILRKGSK----------DL--GS-HTL-E-GSRPGMA----MLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQ 417 (522)
T ss_pred cCcchhcCCCCC----------cc--cc-cee-e-cCcchHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 31 10000100 00 00 134 4 4444333 3577899999999999999999999999999998
Q ss_pred cccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeec
Q 037063 448 NLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFD 482 (588)
Q Consensus 448 ~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~ 482 (588)
+ .|.++++.+. ..++|+|++..
T Consensus 418 ~---------~~~~el~~~p----~l~iv~Fr~~p 439 (522)
T TIGR03799 418 Q---------QPDFELVTEP----ELCLLTYRYVP 439 (522)
T ss_pred h---------CCCeEEecCC----CccEEEEEEeC
Confidence 8 4789999863 46799999753
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-20 Score=193.19 Aligned_cols=286 Identities=13% Similarity=0.119 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
..++|+.+++++++++++ |++|+|+++++.+++.++ +++||+|++....+. .....+...|+++..++.+ +
T Consensus 66 ~~~lr~~ia~~~~~~~~~--i~~t~G~~~~l~~~~~~~-~~~gd~v~~~~p~y~----~~~~~~~~~g~~~~~~~~~--~ 136 (359)
T PRK03158 66 APELRTKVAKHLGVDEEQ--LLFGAGLDEVIQMISRAL-LNPGTNTVMAEPTFS----QYRHNAIIEGAEVREVPLK--D 136 (359)
T ss_pred HHHHHHHHHHHhCCCHHH--EEECCCHHHHHHHHHHHH-hCCCCEEEEcCCCHH----HHHHHHHHcCCeEEEEecC--C
Confidence 358999999999998765 999999999999999998 899999776544332 1234556789999999986 4
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH--cCcEEEEeCCCcC----CCCCCCCC-C
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE--KGWHVLLDATALG----SKDMDTLG-L 332 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~--~g~~vvvDaa~~~----~~d~~~l~-l 332 (588)
+.++.+++++.++ ++++++++++++||||..+|.++| ++++. +|+++|+|.+..- +.....+. +
T Consensus 137 ~~~d~~~l~~~~~--------~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 208 (359)
T PRK03158 137 GGHDLEAMLKAID--------EQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLL 208 (359)
T ss_pred CCcCHHHHHHhcC--------CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHH
Confidence 6789999988887 678999999999999999999998 87776 5999999998432 10001111 1
Q ss_pred CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhh
Q 037063 333 SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSS 412 (588)
Q Consensus 333 ~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~ 412 (588)
......+++.|+.|.||.+...+|++++++++++.+...... .++..+.+
T Consensus 209 ~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~~---------------------------~~~~~~~q--- 258 (359)
T PRK03158 209 EKYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIARPP---------------------------FNTTRIAQ--- 258 (359)
T ss_pred HhcCCEEEEEechHhhcCcchhhehhcCCHHHHHHHHHhcCC---------------------------CCCCHHHH---
Confidence 122356888999999984334469999988887766433210 00111111
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHH
Q 037063 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPAL 492 (588)
Q Consensus 413 ~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~ 492 (588)
.++..+|+.-.. ++.+.+..+..++.+.+.|.++ ++.++. ..+..+.+.+. .+...
T Consensus 259 -~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~-----~~g~~i~~~~~------~~~~~ 314 (359)
T PRK03158 259 -YAAIAALEDQAF--LKECVEKNAEGLEQYYAFCKEY----------GLFYYP-----SQTNFIFVDTG------RDANE 314 (359)
T ss_pred -HHHHHHhcCHHH--HHHHHHHHHHHHHHHHHHHHHC----------CCeeCC-----CcCcEEEEECC------CCHHH
Confidence 222334431111 3445555666677777777763 244432 22444444332 23556
Q ss_pred HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 493 VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 493 v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
+.+.|.++||.+++|.... ..++||+|++ +.+|+++++++|++++
T Consensus 315 ~~~~l~~~gv~v~~g~~f~--------------------------~~~~iRi~~~---~~~~~~~l~~al~~~~ 359 (359)
T PRK03158 315 LFEALLKKGYIVRSGAALG--------------------------FPTGVRITIG---LKEQNDKIIELLKELL 359 (359)
T ss_pred HHHHHHHCCeEEeeCCCCC--------------------------CCCeEEEecC---CHHHHHHHHHHHHHhC
Confidence 6666667899999874321 0128999987 8999999999998863
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-20 Score=195.59 Aligned_cols=162 Identities=19% Similarity=0.134 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....+.++++||++.|. + .+++|+|+++|+.+++.++ +++||+|++....+...+..+...+...|+++..++.
T Consensus 52 npt~~~Le~~lA~leg~--e--~ivvt~gg~~Ai~~~l~al-l~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~- 125 (388)
T PRK08861 52 NPNRGLLEQTLSELESG--K--GAVVTNCGTSALNLWVSAL-LGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ- 125 (388)
T ss_pred CchHHHHHHHHHHHhCC--C--eEEEECCHHHHHHHHHHHH-cCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC-
Confidence 34467899999999996 2 3999999999999999999 8999997765443332333333445567888888753
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFK 336 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~ 336 (588)
.+.++++++++ ++|++|++++++|+||.++|+++| ++|+++|++|++|.++..|....+++ .+
T Consensus 126 -----~d~e~l~~~i~--------~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl~---~G 189 (388)
T PRK08861 126 -----SDAAALDAALA--------KKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLE---LG 189 (388)
T ss_pred -----CCHHHHHHhcC--------cCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCcc---cC
Confidence 37788998887 789999999999999999999999 99999999999999988773234443 24
Q ss_pred CcEEEeccCccCCCCCCc--eEEEEEeC
Q 037063 337 PDFLICSFYKIFGENPSG--FGCLFVKK 362 (588)
Q Consensus 337 ~D~vv~S~~K~~G~~P~G--~G~L~v~~ 362 (588)
+|+++.|+||++|. |.+ .|+++.++
T Consensus 190 aDivv~S~tK~l~G-~~d~~gG~i~~~~ 216 (388)
T PRK08861 190 ADFVIHSTTKYING-HSDVIGGVLITKT 216 (388)
T ss_pred CCEEEeecceeccC-CCcceeEEEEecH
Confidence 99999999997773 544 46666654
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-20 Score=195.30 Aligned_cols=336 Identities=12% Similarity=0.076 Sum_probs=208.8
Q ss_pred CCeeeecCCCCC-CCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHG-LFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRI 188 (588)
Q Consensus 110 ~~~vyLD~a~~g-l~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~i 188 (588)
.+.++||.+..+ +.|..+++++.+.+...... |+. ..-..++|+.|
T Consensus 32 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~-------------------------------Y~~--~~g~~~lr~~i 78 (387)
T PRK08960 32 HDVIHLEIGEPDFTTAEPIVAAGQAALAAGHTR-------------------------------YTA--ARGLPALREAI 78 (387)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCc-------------------------------cCC--CCCCHHHHHHH
Confidence 578999999988 46888888876555321100 000 00124677777
Q ss_pred HHHhC------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccCC-C
Q 037063 189 MDFMN------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAWP-N 260 (588)
Q Consensus 189 a~~lg------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~-~ 260 (588)
+++++ +++++ |++|+|+++|+.+++.++ +++||+|++ ...|+. .. ..++..|++++.++++.+ +
T Consensus 79 a~~~~~~~g~~~~~~~--i~it~G~~~al~~~~~~~-~~~gd~vlv~~p~y~~-~~----~~~~~~g~~~~~v~~~~~~~ 150 (387)
T PRK08960 79 AGFYAQRYGVDVDPER--ILVTPGGSGALLLASSLL-VDPGKHWLLADPGYPC-NR----HFLRLVEGAAQLVPVGPDSR 150 (387)
T ss_pred HHHHHHHhCCCCChhh--EEEccCcHHHHHHHHHHh-cCCCCEEEEcCCCCcc-hH----HHHHhcCCeEEEEecCcccC
Confidence 77763 55554 999999999999999999 899999665 445543 22 334557999999998733 3
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCc-CCCC--CCCCCCC
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATAL-GSKD--MDTLGLS 333 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~-~~~d--~~~l~l~ 333 (588)
+.++.++++++++ ++++++++++++||||..+|.+++ ++|+++|+++++|.+.. ...+ ..++ +.
T Consensus 151 ~~~d~~~l~~~~~--------~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~-~~ 221 (387)
T PRK08960 151 YQLTPALVERHWN--------ADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASV-LE 221 (387)
T ss_pred CCCCHHHHHHHhC--------ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCh-hh
Confidence 4689999999887 678899999999999999998765 56899999999999732 1100 1111 11
Q ss_pred CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhH
Q 037063 334 LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSK 413 (588)
Q Consensus 334 ~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~ 413 (588)
...--+++.|++|.+|.+..++|++++++++++.+...... + ..++..+.+
T Consensus 222 ~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~------------------------~-~~~~s~~~q---- 272 (387)
T PRK08960 222 VDDDAFVLNSFSKYFGMTGWRLGWLVAPPAAVPELEKLAQN------------------------L-YISASTPAQ---- 272 (387)
T ss_pred ccCCEEEEeecccccCCcccEEEEEEcCHHHHHHHHHHHhh------------------------h-ccCCCHHHH----
Confidence 11123678899999984344599999998887765432211 0 011111111
Q ss_pred HHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE-EEEeecCCCCCcCHH
Q 037063 414 LVECKGLDH-ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL-AFNVFDWNGTRIDPA 491 (588)
Q Consensus 414 ~al~~aL~~-l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv-~f~~~~~~g~~i~~~ 491 (588)
.++..+|+. .... +++..+..+..++.+.+.|.++ | +.+... ..++.. -+.+.+. ..+..
T Consensus 273 ~a~~~~l~~~~~~~-l~~~~~~~~~~~~~l~~~L~~~-------~---~~~~~~----p~g~~f~~~~~~~~---~~~~~ 334 (387)
T PRK08960 273 HAALACFEPETLAI-LEARRAEFARRRDFLLPALREL-------G---FGIAVE----PQGAFYLYADISAF---GGDAF 334 (387)
T ss_pred HHHHHHhhcCcHHH-HHHHHHHHHHHHHHHHHHHHhc-------C---CcCCcC----CCeeEEEEEecccc---CCCHH
Confidence 122233321 1111 3445555566677777777763 1 222111 123333 3344321 13345
Q ss_pred HHH-HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 492 LVQ-KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 492 ~v~-~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
.+. ++++++||.+.+|..+... .+..++|++++. +.+++...++.|+++++
T Consensus 335 ~~~~~ll~~~gi~v~pg~~f~~~-----------------------~~~~~iRi~~~~--~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 335 AFCRHFLETEHVAFTPGLDFGRH-----------------------QAGQHVRFAYTQ--SLPRLQEAVERIARGLR 386 (387)
T ss_pred HHHHHHHHhCCEEEcCchHhCCC-----------------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 554 5567899999988544100 111389999985 56777777777776654
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=197.95 Aligned_cols=353 Identities=12% Similarity=0.102 Sum_probs=230.3
Q ss_pred CCeeeecCCCC---CC-CCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHH
Q 037063 110 NNYVCFDYIGH---GL-FSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIR 185 (588)
Q Consensus 110 ~~~vyLD~a~~---gl-~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r 185 (588)
.+.-|+|.++. ++ -++.+.++..+.+.. ++.- ++. ++..||. .+...+++
T Consensus 107 ~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~--~G~g-~~g---------------------~r~~yg~--~~~~~~Le 160 (481)
T PLN02822 107 NGKDVVNFASANYLGLIGNEKIKESCTSALEK--YGVG-SCG---------------------PRGFYGT--IDVHLDCE 160 (481)
T ss_pred CCceEEEeECCCcCCCCCCHHHHHHHHHHHHH--hCCC-Ccc---------------------cCccccC--HHHHHHHH
Confidence 35567777755 22 467777777666643 2211 111 1122333 57788999
Q ss_pred HHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCH
Q 037063 186 KRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHS 265 (588)
Q Consensus 186 ~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~ 265 (588)
++|+++++.+ + .|+|++|.+ ++..++.++ .++||.|+.+..+|..... .++..|+++++++.+ |.
T Consensus 161 e~La~~~~~~-~--~i~~s~G~~-a~~sai~a~-~~~gd~Ii~d~~~H~s~~~----~~~ls~~~~~~~~~n------d~ 225 (481)
T PLN02822 161 TKIAKFLGTP-D--SILYSYGLS-TIFSVIPAF-CKKGDIIVADEGVHWGIQN----GLYLSRSTIVYFKHN------DM 225 (481)
T ss_pred HHHHHHhCCC-C--EEEECCHHH-HHHHHHHHh-CCCCCEEEEeCCccHHHHH----HHHHcCCeEEEECCC------CH
Confidence 9999999974 3 599998877 567788888 8899998877666543322 234457888888764 45
Q ss_pred HHHHHHHhhhccc-cCCCcc-eEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC-C------CCCCCCCCC
Q 037063 266 GKLMKKIVGKRKK-KKKKKR-GLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK-D------MDTLGLSLF 335 (588)
Q Consensus 266 e~l~~~i~~~~~~-~~~~~t-~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~-d------~~~l~l~~~ 335 (588)
++++..+.+.+.. ..++++ ++|++..+++++|.+.|+++| ++|+++|+++++|.++..+. . ...+++...
T Consensus 226 ~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~ 305 (481)
T PLN02822 226 ESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIE 305 (481)
T ss_pred HHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCC
Confidence 6676666521000 011334 799999999999999999999 99999999999999987542 0 122344333
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHH
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLV 415 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~a 415 (588)
.+|+++.|+.|.+| +.| |+++.+++.++.++....+ . .| ....+++.. ++
T Consensus 306 ~~dii~~s~sKalg--~~G-G~i~g~~~ii~~~~~~~~~---~-------------------~f-sa~lPp~~~----~A 355 (481)
T PLN02822 306 KIDIITAAMGHALA--TEG-GFCTGSARVVDHQRLSSSG---Y-------------------VF-SASLPPYLA----SA 355 (481)
T ss_pred CCeEEEecchhhhh--hCC-eEEEcCHHHHHHHHhcCCc---e-------------------ee-ccccCHHHH----HH
Confidence 58999999999998 567 9999998887766532211 1 11 011122222 33
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc-C----H
Q 037063 416 ECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI-D----P 490 (588)
Q Consensus 416 l~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i-~----~ 490 (588)
..++|+.++.. +.+.++++++++++++.|.++ +++.+..+ ..++++.+.+.+..+... + .
T Consensus 356 a~~aL~~l~~~--~~~~~~l~~~~~~l~~~L~~~---------~g~~~~~~----~~spi~~l~l~~~~~~~~~~~~~~~ 420 (481)
T PLN02822 356 AITAIDVLEDN--PSVLAKLKENIALLHKGLSDI---------PGLSIGSN----TLSPIVFLHLEKSTGSAKEDLSLLE 420 (481)
T ss_pred HHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHhc---------CCcccCCC----CCCCEEEEEeCCCcccccchHHHHH
Confidence 34677766542 678889999999999999874 34555443 346788888754211100 1 1
Q ss_pred HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 491 ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 491 ~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
+.+.++++++||.+..+..-. + .. ..+.+.+|++++..+|.+||+++++.|++++.+.
T Consensus 421 ~~~~~Ll~e~GV~v~~~~~~~--~------------~~-------~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~ 478 (481)
T PLN02822 421 HIADRMLKEDSVLVVVSKRST--L------------DK-------CRLPVGIRLFVSAGHTESDILKASESLKRVAASV 478 (481)
T ss_pred HHHHHHHhcCCEEEEeeCCCC--c------------CC-------CCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 234556668899988653210 0 00 0112379999999999999999999999987653
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-20 Score=197.19 Aligned_cols=298 Identities=11% Similarity=0.040 Sum_probs=194.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhC-CCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY-PFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~-~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.+...++++++++++|. ++ .++|++| ++|...++..+ ..++++.|+.+..+|+..... ++..|+++..++.
T Consensus 90 ~~~~~~l~~~la~~~g~-~~--~~~~~sG-~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~----~~~~~~~~~~~~~ 161 (407)
T PRK09064 90 NHYHVELERELADLHGK-EA--ALVFTSG-YVSNDATLSTLAKLIPDCVIFSDELNHASMIEG----IRRSRCEKHIFRH 161 (407)
T ss_pred HHHHHHHHHHHHHHhCC-Cc--EEEECcH-HHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHH----HHHcCCcEEEECC
Confidence 46678999999999995 22 3555555 45544444443 234666666554444433333 2445777665543
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC---CC----C
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK---DM----D 328 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~---d~----~ 328 (588)
.|.++++++++ ....+++++|++++++|++|.+.|+++| ++|+++|+++++|+++..+. .- .
T Consensus 162 ------~d~~~le~~l~----~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~ 231 (407)
T PRK09064 162 ------NDVAHLEELLA----AADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAE 231 (407)
T ss_pred ------CCHHHHHHHHH----hccCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHH
Confidence 36788888886 1122468999999999999999999999 99999999999999987431 00 1
Q ss_pred CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 329 TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
..++. ..+|+++.+++|.|| +.| |+++.++++++.+.....+ . .| ..+.++.
T Consensus 232 ~~~~~-~~~div~~t~sKa~g--~~G-G~~~~~~~~~~~l~~~~~~---~-------------------~~-t~~~~~~- 283 (407)
T PRK09064 232 RDGLM-DRIDIIEGTLAKAFG--VMG-GYIAGSAALVDAVRSYAPG---F-------------------IF-TTSLPPA- 283 (407)
T ss_pred hcCCC-CCCeEEEEecchhhh--ccC-ceEecCHHHHHHHHHhCcc---c-------------------cc-cCcCCHH-
Confidence 11221 247999999999999 456 8888888777655432111 0 11 1112221
Q ss_pred chhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 409 GVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
. .++..++++++++. +...+++..+++++.+.|.++ | ++++. ..++++.+.+.+. .
T Consensus 284 ~---~~aa~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~-------g---~~~~~-----~~~~iv~i~~~~~----~ 339 (407)
T PRK09064 284 I---AAAALASIRHLKES--NEERERHQERAAKLKAALDAA-------G---IPVMP-----NESHIVPVMVGDP----E 339 (407)
T ss_pred H---HHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-------C---CCCCC-----CCCCEEEEEeCCH----H
Confidence 1 14455788887764 445678889999999999885 2 33333 2367777766431 1
Q ss_pred CHHHHHHH-HHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 489 DPALVQKL-ADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 489 ~~~~v~~~-l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
....+.+. ++++||.++.... +.. ..|...||+|++.++|.+|++++++.|+++++
T Consensus 340 ~~~~l~~~L~~~~gi~v~~~~~--p~~---------------------~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~ 396 (407)
T PRK09064 340 KCKKASDMLLEEHGIYVQPINY--PTV---------------------PRGTERLRITPTPFHTDEMIDHLVEALVEVWA 396 (407)
T ss_pred HHHHHHHHHHHhCCEEEeeECC--CCC---------------------CCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 23455554 4667999876311 000 02223899999999999999999999999876
Q ss_pred h
Q 037063 568 A 568 (588)
Q Consensus 568 ~ 568 (588)
+
T Consensus 397 ~ 397 (407)
T PRK09064 397 R 397 (407)
T ss_pred H
Confidence 4
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-20 Score=194.03 Aligned_cols=316 Identities=14% Similarity=0.126 Sum_probs=220.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCce-EEEecCHHHHHHHHHHhCCC-CCCCeEEEcCCCchhHHHHHHHHHHhcCC-EEEEE
Q 037063 178 SELESKIRKRIMDFMNISEDDYT-LVFTANQSSAFKLLAESYPF-YSNPRLLTVYDHENEAAALMIESSKKRGA-RVSSA 254 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~-vvft~g~T~al~lv~~s~~~-~~gd~ll~~~e~~s~~~~~~~~~a~~~G~-~v~~v 254 (588)
.+++.++++.+.++|+++ ++|. +++++++|.++..++.++ + ++|++++... .+ .-.|+.++|++.|+ ++..+
T Consensus 38 ~~i~~e~~~~L~~l~~~~-~~~~v~~l~GsGT~a~Eaa~~nl-~~~~g~~vLv~g-~F--G~r~~~eia~~~g~~~v~~l 112 (374)
T TIGR01365 38 KEKLAEAIKKTREMLGVP-ADYLIGIVPASDTGAVEMALWSM-LGCRGVDVLAWE-SF--GKGWVTDVTKQLKLPDVRVL 112 (374)
T ss_pred HHHHHHHHHHHHHHhCCC-CCcEEEEECCchHHHHHHHHHHc-CCCCCCeEEEEC-HH--HHHHHHHHHHhcCCCCcEEE
Confidence 688999999999999984 3454 566899999999999998 7 4788866543 44 34554589999999 58888
Q ss_pred eccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCC
Q 037063 255 EFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLS 333 (588)
Q Consensus 255 ~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~ 333 (588)
..+|. ..+++++++. . .. |+++|..+.||+.+|+++| +.. ++++++||++++++ ..+++++
T Consensus 113 ~~~~g-~~~~~~~ve~--~--------~~---v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g--~~~l~~d 174 (374)
T TIGR01365 113 EAEYG-KLPDLKKVDF--K--------ND---VVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAF--AQDLDYH 174 (374)
T ss_pred cCCCC-CCCCHHHcCC--C--------CC---EEEecCCCchheecccccccccc--CCCcEEEEccchhc--CCCCChh
Confidence 87743 3578887761 1 11 6799999999999999887 433 48999999998887 5666666
Q ss_pred CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCC--CCCCCceEeeecCCCcccccccccccccccCCCCCccchh
Q 037063 334 LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGS--TSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVS 411 (588)
Q Consensus 334 ~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~--~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~ 411 (588)
. +|++++|.+|.+|. |.|+++++++++++++.+.. ++....+...... . ..... .. ...|++.+.+.
T Consensus 175 ~--iDv~~tgsQK~L~~-ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~-~-~~~~~-----~~-~~~t~~TP~v~ 243 (374)
T TIGR01365 175 K--LDVVTFSWQKVLGG-EGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKG-G-KLNKK-----IF-EGSTINTPSML 243 (374)
T ss_pred H--CcEEEEechhccCC-CCceEEEEECHHHHHHHhhcCCCCCChhhhccccc-c-chhhh-----hh-cCCCCCChHHH
Confidence 4 99999999998886 89999999999998765421 1110001000000 0 00000 00 11244444443
Q ss_pred hHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc-EEEEEeecCCC----
Q 037063 412 SKLVECKGLDHADAL-GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP-SLAFNVFDWNG---- 485 (588)
Q Consensus 412 ~~~al~~aL~~l~~~-G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~-iv~f~~~~~~g---- 485 (588)
.+.++..+|+.+.+. |++++.+|.+.+++.+++.++++ | .+.++... +..+++ ++++.+.+..-
T Consensus 244 ~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~l-------g--~l~~~~~~-~~~rS~tvt~v~~~~~~~~~~~ 313 (374)
T TIGR01365 244 CVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKN-------N--WIHFLAET-PEIRSNTSVCLKVVDPAIDALD 313 (374)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHC-------C--CcccCCCC-hhhcCCCeEEEEeCCccccccc
Confidence 347777888888776 89999999999999999999997 2 24555431 124554 45566643210
Q ss_pred --CCcC-HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHH
Q 037063 486 --TRID-PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 486 --~~i~-~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l 562 (588)
-..+ ...+.+.+.++||.+..|.... .| ..+||+....-+.+||++++++|
T Consensus 314 ~~~~~~~~~~~~~~l~~~gi~i~~G~~~~-------------------------~~-~~fRIg~~G~i~~~di~~l~~~l 367 (374)
T TIGR01365 314 EDAQADFAKELISTLEKEGVAYDIGSYRD-------------------------AP-SGLRIWCGATVEKSDLECLCPWL 367 (374)
T ss_pred cchhhHHHHHHHHHHHHCCEEEecccccc-------------------------CC-CceEEecCCcCCHHHHHHHHHHH
Confidence 0011 4678888988999998773210 11 28999998888999999999997
Q ss_pred H
Q 037063 563 S 563 (588)
Q Consensus 563 ~ 563 (588)
.
T Consensus 368 ~ 368 (374)
T TIGR01365 368 D 368 (374)
T ss_pred H
Confidence 5
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.8e-20 Score=195.84 Aligned_cols=298 Identities=11% Similarity=0.045 Sum_probs=196.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.+...++++++++++|.+ + .++.+++++|+..++..+. ..+++.|+++..+|..... .++..|+++..++.
T Consensus 89 ~~~~~~Le~~la~~~g~~--~--~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~----~~~~~g~~~~~~~~ 160 (402)
T TIGR01821 89 NIPHVELEAELADLHGKE--S--ALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIE----GIRHSGAEKFIFRH 160 (402)
T ss_pred cHHHHHHHHHHHHHhCCC--e--EEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHH----HHHHcCCeEEEECC
Confidence 455679999999999963 2 5555666888777777652 2366667665433432332 23456887766543
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC--C-----CC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK--D-----MD 328 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~--d-----~~ 328 (588)
.|.++++++++. ...+++++|++.+++|++|.+.|+++| ++|+++|+++++|+++..+. . ..
T Consensus 161 ------~d~~~l~~~l~~----~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~ 230 (402)
T TIGR01821 161 ------NDVAHLEKLLQS----VDPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAE 230 (402)
T ss_pred ------CCHHHHHHHHHh----ccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccch
Confidence 267888888861 122368999999999999999999999 99999999999999987542 0 01
Q ss_pred CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 329 TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
..++. ..+|+++.++.|.|| ..| |+++.++++++.+.....+ . .| .++.+..
T Consensus 231 ~~~~~-~~~div~~t~sKa~g--~~G-G~i~~~~~~~~~l~~~~~~---~-------------------~~--t~~~~~~ 282 (402)
T TIGR01821 231 RDGLM-HRIDIIEGTLAKAFG--VVG-GYIAASRKLIDAIRSYAPG---F-------------------IF--TTSLPPA 282 (402)
T ss_pred hccCC-CCCeEEEEechhhhc--cCC-ceeecCHHHHHHHHHhCcC---c-------------------ee--cCcCCHH
Confidence 11111 237899999999999 345 7887787777665432111 0 11 1112222
Q ss_pred chhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 409 GVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
. .++..++|+.+.+. +.+.++...+++++.+.|+++ | ++++. ..++++.+.+.+. .
T Consensus 283 ~---~aaa~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~-------g---~~~~~-----~~~~i~~i~~~~~----~ 338 (402)
T TIGR01821 283 I---AAGATASIRHLKES--QDLRRAHQENVKRLKNLLEAL-------G---IPVIP-----NPSHIVPVIIGDA----A 338 (402)
T ss_pred H---HHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHc-------C---CCcCC-----CCCCEEEEEeCCH----H
Confidence 2 24555788877764 566777788999999999885 2 23333 2467777765431 1
Q ss_pred CHHHHHHH-HHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 489 DPALVQKL-ADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 489 ~~~~v~~~-l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
....+.+. ++++||.++...... . ..|...||+|++.++|.|||+++++.|+++++
T Consensus 339 ~a~~~~~~L~~~~Gi~v~~~~~p~----------------~-------~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~ 395 (402)
T TIGR01821 339 LCKKVSDLLLNKHGIYVQPINYPT----------------V-------PRGTERLRITPTPAHTDKMIDDLVEALLLVWD 395 (402)
T ss_pred HHHHHHHHHHhcCCEEEEeECCCC----------------C-------CCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 13345544 466799987642110 0 02223899999999999999999999999876
Q ss_pred h
Q 037063 568 A 568 (588)
Q Consensus 568 ~ 568 (588)
+
T Consensus 396 ~ 396 (402)
T TIGR01821 396 R 396 (402)
T ss_pred H
Confidence 4
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-20 Score=194.81 Aligned_cols=296 Identities=17% Similarity=0.183 Sum_probs=194.8
Q ss_pred HHHHHHHHHHhC-CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 182 SKIRKRIMDFMN-ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 182 ~~~r~~ia~~lg-a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
.++|+.|+++++ +++++ |++|+|+++|+.+++.++ +.+||+|++....+. .....++..|++++.++.+..+
T Consensus 65 ~~lr~~ia~~~~~~~~~~--vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~----~~~~~~~~~g~~v~~v~~~~~~ 137 (373)
T PRK07324 65 PEFKEAVASLYQNVKPEN--ILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQ----QLYDIPESLGAEVDYWQLKEEN 137 (373)
T ss_pred HHHHHHHHHHhcCCChhh--EEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCch----hHHHHHHHcCCEEEEEeccccc
Confidence 379999999885 66654 999999999999999999 899999876554432 2245667889999999987433
Q ss_pred -CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcC-CCC--CCCCCC
Q 037063 261 -LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALG-SKD--MDTLGL 332 (588)
Q Consensus 261 -~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~-~~d--~~~l~l 332 (588)
..+|.+++++++. +++++|++++++||||..+| +++| ++|+++|+++++|.+... ..+ ..++ .
T Consensus 138 ~~~~d~~~l~~~~~--------~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~-~ 208 (373)
T PRK07324 138 GWLPDLDELRRLVR--------PNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSI-A 208 (373)
T ss_pred CCCCCHHHHHHhCC--------CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCCh-h
Confidence 3578999988887 68999999999999999999 6667 889999999999998322 110 1111 1
Q ss_pred CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhh
Q 037063 333 SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSS 412 (588)
Q Consensus 333 ~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~ 412 (588)
+...-.+++.|++|.||++..++|+++.++++++.+...... .. .+...+.+
T Consensus 209 ~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~~~~~--~~-----------------------~~~~~~~q--- 260 (373)
T PRK07324 209 DLYEKGISTNSMSKTYSLPGIRVGWIAANEEVIDILRKYRDY--TM-----------------------ICAGVFDD--- 260 (373)
T ss_pred hccCCEEEEecchhhcCCccceeEEEecCHHHHHHHHHHhCc--EE-----------------------ecCChHHH---
Confidence 111234677899999985445689999988877766543311 00 00111111
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHH
Q 037063 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPAL 492 (588)
Q Consensus 413 ~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~ 492 (588)
.+...+|+..+.+ +++..+..+...+.+.+.|.+. +++.+..| .++...|...+.. ++...
T Consensus 261 -~~a~~~l~~~~~~-l~~~~~~~~~~~~~l~~~l~~~---------~~~~~~~p-----~gg~~~~i~~~~~---~~~~~ 321 (373)
T PRK07324 261 -MLASLALEHRDAI-LERNRKIVRTNLAILDEWVAKE---------PRVSYVKP-----KAVSTSFVKLDVD---MPSED 321 (373)
T ss_pred -HHHHHHHcCHHHH-HHHHHHHHHHHHHHHHHHHhcC---------CCceEECC-----CceEEEEEEeCCC---CCHHH
Confidence 1222344322222 3444444455556666666652 34555544 2333333322211 34444
Q ss_pred H-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 493 V-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 493 v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+ .+++++.||.+.+|.... ..+ +||+|++. +.+.+...++.|++++++
T Consensus 322 ~~~~ll~~~gv~v~pg~~F~------------------------~~~--~iRis~~~--~~~~l~~~l~rl~~~l~~ 370 (373)
T PRK07324 322 FCLKLLKETGVLLVPGNRFD------------------------LEG--HVRIGYCC--DTETLKKGLKKLSEFLRE 370 (373)
T ss_pred HHHHHHHhcCEEEECccccC------------------------CCC--eEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 4 566788999999884320 022 89999874 688899999999888764
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-19 Score=192.30 Aligned_cols=296 Identities=12% Similarity=0.063 Sum_probs=198.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
.++.+++++++++++|.+ ..|++|+| ++++.+++.++ +++||.|++...+|..... .++..|+++..++
T Consensus 77 ~~l~~~l~~~l~~~~g~~---~~i~~~sG-~~a~~~a~~~~-~~~gd~vi~~~~~~~~~~~----~~~~~g~~~~~~~-- 145 (385)
T TIGR01825 77 LRLHEELEEKLAKFKKTE---AALVFQSG-FNTNQGVLSAL-LRKGDIVLSDELNHASIID----GLRLTKATKKIYK-- 145 (385)
T ss_pred cHHHHHHHHHHHHHhCCC---cEEEECcH-HHHHHHHHHHh-CCCCCEEEEEccccHHHHH----HHHhcCCceEEeC--
Confidence 567889999999999973 24777777 55666777777 8999997755443332222 2234677776553
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-CC------CCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS-KD------MDT 329 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~-~d------~~~ 329 (588)
.+|.+++++.+.+ ...+++++|+++++.|+||.+.|+++| ++|+++|+++|+|+++..+ .+ ...
T Consensus 146 ----~~d~~~l~~~l~~----~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~ 217 (385)
T TIGR01825 146 ----HADMDDLDRVLRE----NPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHH 217 (385)
T ss_pred ----CCCHHHHHHHHHh----hccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhh
Confidence 3678889888862 222478999999999999999999999 9999999999999997543 11 011
Q ss_pred CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC-CCcc
Q 037063 330 LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE-SSIS 408 (588)
Q Consensus 330 l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT-~~~~ 408 (588)
+++. ...|+++.|++|.+| ..| |+++.+++.++.+...... + ..++ .+..
T Consensus 218 ~~~~-~~~~i~~~s~sK~~~--~~g-G~~~~~~~~~~~~~~~~~~------------------------~-~~~~~~~~~ 268 (385)
T TIGR01825 218 FGLE-DKVDIQVGTLSKAIG--VVG-GYAAGHKELIEYLKNRARP------------------------F-LFSTAQPPA 268 (385)
T ss_pred cCCC-cCCcEEEEeccHHhh--cCC-CEEecCHHHHHHHHHhCcc------------------------c-cccCCCCHH
Confidence 3333 347999999999998 445 8888887777665422100 0 1111 1111
Q ss_pred chhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 409 GVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
. .+++.++++.+.+. .++.++..++++++.+.|.++ | ++++.+ .++++.+.+... .
T Consensus 269 ~---~~a~~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~-------g---~~~~~~-----~~~~~~~~~~~~----~ 324 (385)
T TIGR01825 269 V---VAALAAAVDELQRS--PELMERLWDNTRFFKAGLGKL-------G---YDTGGS-----ETPITPVVIGDE----K 324 (385)
T ss_pred H---HHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-------C---CCCCCC-----CCCEEEEEECCH----H
Confidence 1 24556777766543 456777788899999999875 2 334433 245666654321 1
Q ss_pred CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 489 DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 489 ~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+...+.+.|.++||.++.+.+... ..|...||++++++++.||++++++.|++++++
T Consensus 325 ~~~~~~~~L~~~gi~v~~~~~~~~-----------------------~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 325 AAQEFSRRLFDEGIFAQSIVFPTV-----------------------PRGTARIRNIPTAEHTKDDLDQALDAYEKVGKE 381 (385)
T ss_pred HHHHHHHHHHHCCcEEcccCCCCC-----------------------CCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 244566666566999864432210 022238999999999999999999999998754
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-20 Score=195.96 Aligned_cols=169 Identities=14% Similarity=0.097 Sum_probs=133.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....+++++.+++++|++ + .++++|++.|+.+++.++ +++||+|++....+.....+....++..|++++.++.+
T Consensus 64 ~p~~~~le~~lA~l~g~~---~-~i~~~sG~~Al~~~l~~l-l~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~ 138 (403)
T PRK07503 64 NPTLALLEQRMASLEGGE---A-AVALASGMGAITATLWTL-LRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT 138 (403)
T ss_pred CchHHHHHHHHHHHhCCC---c-EEEEcCHHHHHHHHHHHH-cCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCC
Confidence 345678999999999985 2 466668889999999888 89999977654443334444455667789999998763
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFK 336 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~ 336 (588)
++++++++++ ++|++|++++++|++|...|+++| ++|+++|+++|+|+++..+....+++ +.
T Consensus 139 ------d~~~l~~~i~--------~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l~---~g 201 (403)
T PRK07503 139 ------DPAALKAAIS--------DKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLE---LG 201 (403)
T ss_pred ------CHHHHHHhcC--------ccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchh---hC
Confidence 6788999887 689999999999999999999999 99999999999999987763233332 34
Q ss_pred CcEEEeccCccCCCCCCc--eEEEEEeCcchhccc
Q 037063 337 PDFLICSFYKIFGENPSG--FGCLFVKKSSASVLS 369 (588)
Q Consensus 337 ~D~vv~S~~K~~G~~P~G--~G~L~v~~~~~~~l~ 369 (588)
+|+++.|++|++|. +.+ .|+++.+++++++++
T Consensus 202 ~Di~v~S~tK~l~g-~gd~~gG~v~~~~~l~~~l~ 235 (403)
T PRK07503 202 ADLVVHSATKYLGG-HGDITAGLVVGGKALADRIR 235 (403)
T ss_pred CCEEEccccccccC-CCceeEEEEEcCHHHHHHHH
Confidence 89999999998882 322 788887777766664
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-19 Score=191.00 Aligned_cols=305 Identities=12% Similarity=0.080 Sum_probs=195.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCC-ceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDD-YTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e-~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++.+.+.+.+++++|++.+. .+|++|+|+++++.+++.++ +++||+|++....+. .....++..|++++.+++
T Consensus 81 ~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l-~~~Gd~Vlv~~P~y~----~~~~~~~~~g~~v~~v~~ 155 (405)
T PRK06207 81 ADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAAT-VARGDKVAIVQPDYF----ANRKLVEFFEGEMVPVQL 155 (405)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCch----hHHHHHHHcCCEEEEEec
Confidence 455666667777777854332 35999999999999999999 899999775544332 123566778999999987
Q ss_pred cC----CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC----C
Q 037063 257 AW----PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG----S 324 (588)
Q Consensus 257 ~~----~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~----~ 324 (588)
+. .+..+++++|++++. +++++|++++++||||..++.++ | ++|+++|++||+|.+..- +
T Consensus 156 ~~~~~~~~~~~d~~~l~~~~~--------~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~ 227 (405)
T PRK06207 156 DYLSADKRAGLDLDQLEEAFK--------AGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDG 227 (405)
T ss_pred cccCcccCCCcCHHHHHHhhh--------hcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC
Confidence 52 246789999999987 67899999999999999999655 5 778999999999998332 1
Q ss_pred C---CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccccccccc
Q 037063 325 K---DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSK 401 (588)
Q Consensus 325 ~---d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e 401 (588)
. .+..++. ....-+++.|++|.||.+..++|+++.++++++.+....... .
T Consensus 228 ~~~~~~~~~~~-~~~~vi~i~SfSK~~~lpGlRiG~ii~~~~l~~~~~~~~~~~-------------------------~ 281 (405)
T PRK06207 228 TSYTHLRALPI-DPENVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQAIV-------------------------S 281 (405)
T ss_pred CCCCchhcCCC-CcCcEEEEecchhhccCcccceEEEEcCHHHHHHHHHHHhHh-------------------------c
Confidence 1 0111111 011237888999999854455999999888776664322100 0
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEee
Q 037063 402 FPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVF 481 (588)
Q Consensus 402 ~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~ 481 (588)
.++..+.+ .++..+|+.-... +++..++.++.++++.+.|.++ ++++++.| ..|..+-+.+.
T Consensus 282 ~~~~~~~q----~a~~~~l~~~~~~-~~~~~~~~~~~r~~l~~~L~~~---------~~~~~~~p----~gg~fl~~~l~ 343 (405)
T PRK06207 282 LRAAGYSQ----AVLRTWFSEPDGW-MKDRIARHQAIRDDLLRVLRGV---------EGVFVRAP----QAGSYLFPRLP 343 (405)
T ss_pred cCCCHHHH----HHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHhcC---------CCceecCC----CeeEEEEEeCc
Confidence 01111111 2223333210010 3444455566677777777663 34555433 12334444443
Q ss_pred cCCCCCcCHHHHHHHH-HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHH
Q 037063 482 DWNGTRIDPALVQKLA-DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 482 ~~~g~~i~~~~v~~~l-~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~ 560 (588)
.. .++...+.+.| +++||.+.+|.... . .+.+++|+|++. +.++++..++
T Consensus 344 ~~---~~~~~~~~~~l~~~~gV~v~pG~~F~----------------~--------~~~~~~Ris~~~--~~~~l~~al~ 394 (405)
T PRK06207 344 RL---AVSLHDFVKILRLQAGVIVTPGTEFS----------------P--------HTADSIRLNFSQ--DHAAAVAAAE 394 (405)
T ss_pred cc---CCCHHHHHHHHHHhcCEEEeCchHhC----------------C--------CCCCeEEEEecC--CHHHHHHHHH
Confidence 21 13455565555 57899999884321 0 112389999985 6789888888
Q ss_pred HHHHhhhh
Q 037063 561 FVSRFLDA 568 (588)
Q Consensus 561 ~l~~~l~~ 568 (588)
.|.+++++
T Consensus 395 rl~~~l~~ 402 (405)
T PRK06207 395 RIAQLIER 402 (405)
T ss_pred HHHHHHHH
Confidence 88887754
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=194.83 Aligned_cols=304 Identities=14% Similarity=0.099 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEEEcC-CCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLLTVY-DHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll~~~-e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
+...+++++|++++|.+ ..|+|++| ++|+..++..+. ..+|+.|+++. .|.+ .+ ..++..|+++..++.
T Consensus 91 ~~~~~Le~~la~~~g~~---~~i~~~sG-~~a~~~~i~~l~~~~~g~~vi~~~~~h~s-~~----~~~~~~g~~~~~~~~ 161 (410)
T PRK13392 91 HPHVLLERELADLHGKE---SALLFTSG-YVSNDAALSTLGKLLPGCVILSDALNHAS-MI----EGIRRSGAEKQVFRH 161 (410)
T ss_pred HHHHHHHHHHHHHhCCC---CEEEECcH-HHHHHHHHHHHhcCCCCCEEEEehhhhHH-HH----HHHHHcCCeEEEEeC
Confidence 34679999999999963 34777766 556555555442 34788776654 4443 22 234567888877654
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC-CCCC-----
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK-DMDT----- 329 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~-d~~~----- 329 (588)
+ +.+++++.+. ....+++++|++++++|+||.+.|+++| ++|+++|+++++|+++..+. ....
T Consensus 162 ~------d~~~l~~~l~----~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~ 231 (410)
T PRK13392 162 N------DLADLEEQLA----SVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAE 231 (410)
T ss_pred C------CHHHHHHHHH----hccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhh
Confidence 2 4566777665 2223578999999999999999999999 99999999999999987542 0111
Q ss_pred -CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 330 -LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 330 -l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
.++ ..++|+++.|++|.||. .| |++..++++++.++....+ . .| .+..+..
T Consensus 232 ~~~~-~~~~div~~tlsK~~g~--~G-G~~~~~~~~~~~l~~~~~~---~-------------------~~--s~~~~~~ 283 (410)
T PRK13392 232 RDGL-MDRIDMIQGTLAKAFGC--LG-GYIAASADLIDFVRSFAPG---F-------------------IF--TTALPPA 283 (410)
T ss_pred hccC-CCCCcEEEEEChHhhhc--cc-chhhcCHHHHHHHHHhCcc---h-------------------hc--cCcCCHH
Confidence 111 12478999999999994 35 7888887777655432211 0 00 0011111
Q ss_pred chhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 409 GVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
. .+++.++|+.+... ....+++...++++++.|.++ | ++++. ..++++.+.+.+. .
T Consensus 284 ~---~~a~~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~-------g---~~~~~-----~~~~~~~i~~~~~----~ 339 (410)
T PRK13392 284 V---AAGATAAIRHLKTS--QTERDAHQDRVAALKAKLNAN-------G---IPVMP-----SPSHIVPVMVGDP----T 339 (410)
T ss_pred H---HHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-------C---CCCCC-----CCCCEEEEEeCCH----H
Confidence 1 25566788877664 344567778888999999875 2 33332 2456665555321 1
Q ss_pred CHHHHHH-HHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 489 DPALVQK-LADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 489 ~~~~v~~-~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
....+.+ +++++||.++.+..-. . ..|...||+|++.++|.||++++++.|+++++
T Consensus 340 ~~~~~~~~L~~~~GI~v~~~~~p~--~---------------------~~~~~~lRis~~~~~t~edid~l~~aL~~~~~ 396 (410)
T PRK13392 340 LCKAISDRLMSEHGIYIQPINYPT--V---------------------PRGTERLRITPTPLHDDEDIDALVAALVAIWD 396 (410)
T ss_pred HHHHHHHHHHHhCCEEEeeeCCCC--C---------------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 2344555 4567899998642100 0 02334899999999999999999999999876
Q ss_pred hhhcccccccc
Q 037063 568 ADFVEKERWRY 578 (588)
Q Consensus 568 ~~~~~~~~~~~ 578 (588)
+.-+ ..||-
T Consensus 397 ~~~~--~~~~~ 405 (410)
T PRK13392 397 RLEL--PRWRE 405 (410)
T ss_pred HcCC--ccchh
Confidence 5322 45553
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-20 Score=196.82 Aligned_cols=298 Identities=14% Similarity=0.160 Sum_probs=196.2
Q ss_pred HHHHHHHHHh----C--CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 183 KIRKRIMDFM----N--ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 183 ~~r~~ia~~l----g--a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++|+.|++++ | ++++ .|++|+|+++|+.+++.++ +++||+|++....+... ...++..|++++.+++
T Consensus 74 ~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l-~~~g~~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~ 146 (391)
T PRK08361 74 ELREAIAEYYKKFYGVDVDVD--NVIVTAGAYEATYLAFESL-LEEGDEVIIPDPAFVCY----VEDAKIAEAKPIRIPL 146 (391)
T ss_pred HHHHHHHHHHHHHhCCCCCcc--cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccc----HHHHHHcCCEEEEEec
Confidence 5666777665 4 5554 4999999999999999998 89999977544433212 3455668999999998
Q ss_pred cCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcC----CCCC
Q 037063 257 AWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALG----SKDM 327 (588)
Q Consensus 257 ~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~----~~d~ 327 (588)
+.+ ++.+|++++++.++ ++++++++++++|+||..+| +++| ++|+++++++|+|.+..- +...
T Consensus 147 ~~~~~~~~d~~~l~~~i~--------~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~ 218 (391)
T PRK08361 147 REENEFQPDPDELLELIT--------KRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKH 218 (391)
T ss_pred CCccCCCCCHHHHHHhcc--------cccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCC
Confidence 733 35699999999987 67899999999999999999 6667 889999999999998321 1101
Q ss_pred CCC-CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 328 DTL-GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 328 ~~l-~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
.++ .+ ....++++.|++|.||.+..++|++++++++++.+....... -.+++.
T Consensus 219 ~~~~~~-~~~~~i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~ 272 (391)
T PRK08361 219 YPMIKY-APDNTILANSFSKTFAMTGWRLGFVIAPEQVIKDMIKLHAYI-------------------------IGNVAS 272 (391)
T ss_pred CCHhhc-CCCCEEEEecCchhcCCcHhhhhhhccCHHHHHHHHHHHhhh-------------------------ccCCCh
Confidence 111 11 123578999999999942223999999888776553221000 001111
Q ss_pred ccchhhHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEE-EeecCC
Q 037063 407 ISGVSSKLVECKGLDHADA-LGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAF-NVFDWN 484 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~-~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f-~~~~~~ 484 (588)
+.+ .++..+|+.-.. ..++++.++.++..+.+.+.|+++ ++++++.| .++...+ .+.+.
T Consensus 273 ~~q----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~---------~~~~~~~p-----~g~~~~~~~l~~~- 333 (391)
T PRK08361 273 FVQ----IAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEM---------PHIKVFEP-----KGAFYVFANIDET- 333 (391)
T ss_pred HHH----HHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhC---------CCCeecCC-----CEEEEEEEECCCC-
Confidence 111 122233321100 025677777788888888988874 45666654 3444333 44321
Q ss_pred CCCcCHHHHHH-HHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 485 GTRIDPALVQK-LADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 485 g~~i~~~~v~~-~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
.++...+.. +++++||.+.+|..+. . .+.++||++++. +.++++..++.|+
T Consensus 334 --~~~~~~l~~~l~~~~gv~v~pg~~f~----------------~--------~~~~~iRi~~~~--~~~~l~~al~~l~ 385 (391)
T PRK08361 334 --GMSSEDFAEWLLEKARVVVIPGTAFG----------------K--------AGEGYIRISYAT--SKEKLIEAMERME 385 (391)
T ss_pred --CCCHHHHHHHHHHhCCEEEcCchhhC----------------C--------CCCCEEEEEecC--CHHHHHHHHHHHH
Confidence 144555554 5567899999884321 0 122389999884 6788999999888
Q ss_pred Hhhhh
Q 037063 564 RFLDA 568 (588)
Q Consensus 564 ~~l~~ 568 (588)
+++++
T Consensus 386 ~~l~~ 390 (391)
T PRK08361 386 KALEE 390 (391)
T ss_pred HHHhc
Confidence 87753
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-20 Score=196.21 Aligned_cols=300 Identities=16% Similarity=0.133 Sum_probs=195.8
Q ss_pred HHHHHHHHHHh----C--CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 182 SKIRKRIMDFM----N--ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 182 ~~~r~~ia~~l----g--a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.++|+.|++++ | ++++ +|++|+|+++|+.+++.++ +++||+|++....+. .+ ...++..|++++.++
T Consensus 71 ~~lr~~ia~~~~~~~~~~~~~~--~i~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~y~-~~---~~~~~~~g~~~~~~~ 143 (393)
T PRK05764 71 PELREAIAAKLKRDNGLDYDPS--QVIVTTGAKQALYNAFMAL-LDPGDEVIIPAPYWV-SY---PEMVKLAGGVPVFVP 143 (393)
T ss_pred HHHHHHHHHHHHHHhCCCCCHH--HEEEeCCcHHHHHHHHHHh-cCCCCEEEecCCCCc-ch---HHHHHHcCCEEEEEe
Confidence 46677777765 3 4444 4999999999999999998 899999765544332 12 345667899999999
Q ss_pred ccCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCCCcCC----C-
Q 037063 256 FAWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYM---WM-SVAAEKGWHVLLDATALGS----K- 325 (588)
Q Consensus 256 ~~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa~~~~----~- 325 (588)
.+.. +..+|+++++++++ +++++|++++++|+||..+|.+ +| ++|+++|+++++|.+.... .
T Consensus 144 ~~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~ 215 (393)
T PRK05764 144 TGEENGFKLTVEQLEAAIT--------PKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAE 215 (393)
T ss_pred cCcccCCcCCHHHHHHhhC--------ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCC
Confidence 8732 35688999999987 6789999999999999999854 56 7899999999999884321 0
Q ss_pred --CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCC
Q 037063 326 --DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP 403 (588)
Q Consensus 326 --d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G 403 (588)
....+.......++++.|+.|.+|.+..++|+++.++++++.+....... ..+
T Consensus 216 ~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~~~~~~~~~~~~~~-------------------------~~~ 270 (393)
T PRK05764 216 FTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPKELIKAMSKLQSHS-------------------------TSN 270 (393)
T ss_pred cccHHHcCCCCcCCEEEEecCcccccCccceeEEEecCHHHHHHHHHHHhhc-------------------------ccC
Confidence 11122112234678999999999842234899998888777654322110 011
Q ss_pred CCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE-EEeec
Q 037063 404 ESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA-FNVFD 482 (588)
Q Consensus 404 T~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~-f~~~~ 482 (588)
+..+.+ .++..+|+.... -+++..++.....+.+.+.|.++ +++.++.| .++... +.+..
T Consensus 271 ~~~~~q----~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~---------~g~~~~~~-----~g~~~~~~~~~~ 331 (393)
T PRK05764 271 PTSIAQ----YAAVAALNGPQD-EVEEMRQAFEERRDLMVDGLNEI---------PGLECPKP-----EGAFYVFPNVSK 331 (393)
T ss_pred CChHHH----HHHHHHHcCChH-HHHHHHHHHHHHHHHHHHHHhhC---------CCCcccCC-----CcceEEEEeccc
Confidence 111211 222233331111 14556666677777888888763 45555543 344333 33432
Q ss_pred CCC-CCcCHHHH-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHH
Q 037063 483 WNG-TRIDPALV-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 483 ~~g-~~i~~~~v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~ 560 (588)
... ...+..++ ..+++++||.+++|..+. ..++||+|++. +.++++++++
T Consensus 332 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~--------------------------~~~~vRis~~~--~~~~~~~~i~ 383 (393)
T PRK05764 332 LLGKSITDSLEFAEALLEEAGVAVVPGIAFG--------------------------APGYVRLSYAT--SLEDLEEGLE 383 (393)
T ss_pred ccccccCCHHHHHHHHHHhCCEEEccccccC--------------------------CCCEEEEEecC--CHHHHHHHHH
Confidence 100 00123454 456678899999885441 01289999874 7999999999
Q ss_pred HHHHhhhh
Q 037063 561 FVSRFLDA 568 (588)
Q Consensus 561 ~l~~~l~~ 568 (588)
.|.++++.
T Consensus 384 ~l~~~~~~ 391 (393)
T PRK05764 384 RIERFLES 391 (393)
T ss_pred HHHHHHHh
Confidence 99988763
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-20 Score=194.49 Aligned_cols=167 Identities=10% Similarity=0.014 Sum_probs=131.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
..-.+.+.++|+++-|.. ..++++|+++|++.++.++ +++||+|++ ...|.. ....+.+.+++.|+++.+++.
T Consensus 61 nPt~~~le~~la~LEg~~----~a~~~~SGmaAi~~~~~~l-l~~GD~Vv~~~~~Yg~-t~~l~~~~l~~~Gi~v~~vd~ 134 (395)
T PRK08114 61 TLTHFSLQEAMCELEGGA----GCALYPCGAAAVANAILAF-VEQGDHVLMTGTAYEP-TQDFCSKILSKLGVTTTWFDP 134 (395)
T ss_pred ChhHHHHHHHHHHHhCCC----eEEEEhHHHHHHHHHHHHH-cCCCCEEEEeCCCcHH-HHHHHHHHHHhcCcEEEEECC
Confidence 344568889999998873 2667777999999999999 999999765 455554 444445667889999999875
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcC--cEEEEeCCCcCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKG--WHVLLDATALGSKDMDTLGLS 333 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g--~~vvvDaa~~~~~d~~~l~l~ 333 (588)
.+.++++++|+ ++|+||.+.+++|++|.+.|+++| ++||++| +.++||+++..|...+++
T Consensus 135 ------~d~~~l~~~l~--------~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl--- 197 (395)
T PRK08114 135 ------LIGADIAKLIQ--------PNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKAL--- 197 (395)
T ss_pred ------CCHHHHHHhcC--------CCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccCHH---
Confidence 26688999998 789999999999999999999999 9999984 999999999998433333
Q ss_pred CCCCcEEEeccCccCCCCC--CceEEEEEeCcchhcc
Q 037063 334 LFKPDFLICSFYKIFGENP--SGFGCLFVKKSSASVL 368 (588)
Q Consensus 334 ~~~~D~vv~S~~K~~G~~P--~G~G~L~v~~~~~~~l 368 (588)
.+++|+++.|.||+++. + .+.|+++.+++.++.+
T Consensus 198 ~~GaDivv~S~tKyl~G-hsdv~~G~v~~~~~~~~~l 233 (395)
T PRK08114 198 DFGIDISIQAGTKYLVG-HSDAMIGTAVANARCWEQL 233 (395)
T ss_pred HcCCcEEEEcCcccccC-CCcceeEEEEcCHHHHHHH
Confidence 34599999999996652 4 3678777776654444
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=193.49 Aligned_cols=307 Identities=15% Similarity=0.108 Sum_probs=194.7
Q ss_pred CchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEE
Q 037063 175 SEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSS 253 (588)
Q Consensus 175 ~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~ 253 (588)
+......+++++++++++|++ + .++++++++|+.+++.++ +++||+|++ ...|.+ ....+...++..|+++.+
T Consensus 60 r~~~p~~~~le~~lA~l~g~~---~-~i~~ssG~~Ai~~~l~al-l~~GD~Vi~~~~~y~~-~~~~~~~~~~~~Gi~v~~ 133 (398)
T PRK08249 60 RNTNPTVQAFEEKVRILEGAE---A-ATAFSTGMAAISNTLYTF-LKPGDRVVSIKDTYGG-TNKIFTEFLPRMGVDVTL 133 (398)
T ss_pred CCCChHHHHHHHHHHHHhCCC---e-EEEeCChHHHHHHHHHHh-cCCCCEEEEcCCchHH-HHHHHHHHHhhCCeEEEE
Confidence 334567789999999999974 2 566666688999999888 899999765 445544 333334556778999887
Q ss_pred EeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCC
Q 037063 254 AEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGL 332 (588)
Q Consensus 254 v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l 332 (588)
++. .|+++++++|+ ++|++|++.+++|+||.+.|+++| ++|+++|+++++|+++..+....++.
T Consensus 134 vd~------~d~e~l~~~i~--------~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~- 198 (398)
T PRK08249 134 CET------GDHEQIEAEIA--------KGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPLA- 198 (398)
T ss_pred cCC------CCHHHHHHhcC--------CCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCchh-
Confidence 753 47899999997 789999999999999999999999 99999999999999987764333332
Q ss_pred CCCCCcEEEeccCccCCCCCCc---eEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 333 SLFKPDFLICSFYKIFGENPSG---FGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 333 ~~~~~D~vv~S~~K~~G~~P~G---~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
..+|+++.|++|++| +.| .|+++.++++++++...... ..++.+...
T Consensus 199 --~~~Divv~S~sK~l~--g~~~~~gG~vv~~~~l~~~l~~~~~~--------------------------~g~~~s~~~ 248 (398)
T PRK08249 199 --LGADLVIHSATKFLS--GHADALGGVVCGSKELMEQVYHYREI--------------------------NGATMDPMS 248 (398)
T ss_pred --hCCCEEeccCceecC--CCCCceEEEEECCHHHHHHHHHHHHh--------------------------cCCCCCHHH
Confidence 348999999999887 323 36666666666555422110 000111111
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCC------------CCcccEE
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVM------------FDRGPSL 476 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~------------~~rg~iv 476 (588)
. +.+..+++.+ +...++..+.+.++.+.|.+. |.| +|+-|.-. ..-|+++
T Consensus 249 a---~l~l~~l~tL-----~~R~~~~~~na~~la~~L~~~---------p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~ 311 (398)
T PRK08249 249 A---YLILRGMKTL-----KLRVRQQQESAMALAKYLQTH---------PKVEAVYYPGLETHPNHEIAKAQMRGFGGIL 311 (398)
T ss_pred H---HHHHhCcchH-----HHHHHHHHHHHHHHHHHHHcC---------CCeeEEECCCCCCCccHHHHHhhCCCCCceE
Confidence 0 1122333333 333455566677777777763 333 35555211 1247899
Q ss_pred EEEeecCCCCCcCHHHHHHHHHhCCcE---eccccc----cCcccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecC
Q 037063 477 AFNVFDWNGTRIDPALVQKLADRHNIS---LSCGFL----QNIFFSGEYEQERVRVLETRSGTNETRSGV--SVVTAALG 547 (588)
Q Consensus 477 ~f~~~~~~g~~i~~~~v~~~l~~~gI~---v~~G~~----c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg 547 (588)
+|.+.+ +.+.+.+++++-.+. ++-|.. |++.....+. . ...-.. ..|+ +.||+|+|
T Consensus 312 sf~~~~------~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~-~-~~~~~~-------~~gi~~~liR~svG 376 (398)
T PRK08249 312 SFVLKG------GMDTVKRLLPKLRYAHRAANLGAVETIYGPARTTSHVE-N-TLEERA-------ALGIPEGLVRISVG 376 (398)
T ss_pred EEEEcC------CHHHHHHHHHhCCcceEccCCCCCCceeeCCccccccc-C-CHHHHH-------hcCCCCCeEEEEec
Confidence 999864 134456666665543 232321 1111110000 0 000011 1343 38999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhh
Q 037063 548 CLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 548 ~~~t~eDv~~li~~l~~~l~~ 568 (588)
. ||++.|++-|.+.|+.
T Consensus 377 l----E~~~dl~~dl~~al~~ 393 (398)
T PRK08249 377 I----EDTEDLIADLEQAFAH 393 (398)
T ss_pred c----CCHHHHHHHHHHHHHH
Confidence 7 8888888888887765
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-19 Score=190.37 Aligned_cols=331 Identities=9% Similarity=0.003 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....++++++++++|++ . +++|+|+|+|+.+++.++.+++||+|++ ...|.+ .. ..+...|++++.++++
T Consensus 33 ~~~~~le~~la~~~g~~--~--~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~-~~----~~~~~~G~~~v~vd~~ 103 (379)
T PRK11658 33 PKNQALEQAFCQLTGNQ--H--AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVS-TL----NMIVLLGATPVMVDVD 103 (379)
T ss_pred HhHHHHHHHHHHHhCCC--e--EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHH-HH----HHHHHcCCEEEEEecC
Confidence 44679999999999994 2 7889999999999999987899999765 445554 22 3345679999999998
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFK 336 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~ 336 (588)
..++.+|+++++++++ ++|++|+..| ++|...|+++| ++|+++|++|++|+++..+.......+..+.
T Consensus 104 ~~~~~~d~~~l~~~i~--------~~tkav~~~~---~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g 172 (379)
T PRK11658 104 RDTLMVTPEAIEAAIT--------PRTKAIIPVH---YAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARG 172 (379)
T ss_pred CCcCCcCHHHHHHhcc--------cCCeEEEEeC---CCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCC
Confidence 5556789999999998 6789887554 59999999999 9999999999999999876212211123334
Q ss_pred CcEEEeccCccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccc-cccccCCC-CCccchhhH
Q 037063 337 PDFLICSFYKIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDE-SSQSKFPE-SSISGVSSK 413 (588)
Q Consensus 337 ~D~vv~S~~K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~-~~f~e~GT-~~~~~~~~~ 413 (588)
.|++.++.+|.+.. +. .|+++.+ +++.++++.....| ...+... .......+. ..+ +.|+ ..+.
T Consensus 173 ~~~~Sf~~~K~l~~-g~-GG~v~~~~~~~~~~~~~~~~~G-~~~~~~~----~~~~~~~~~~~~~-~~G~n~~~~----- 239 (379)
T PRK11658 173 TAIFSFHAIKNITC-AE-GGLVVTDDDELADRLRSLKFHG-LGVDAFD----RQTQGRAPQAEVL-TPGYKYNLA----- 239 (379)
T ss_pred CEEEeCCCCCcCcc-cC-ceEEEECCHHHHHHHHHHHHcC-CCcchhh----hhcccCCCcceee-ccccccCcC-----
Confidence 66666666785542 32 3555544 46666666533221 1111000 000000000 012 3454 2232
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc-cEEEEEeecCCCCCcCHHH
Q 037063 414 LVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG-PSLAFNVFDWNGTRIDPAL 492 (588)
Q Consensus 414 ~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg-~iv~f~~~~~~g~~i~~~~ 492 (588)
.+.+|+...+..+++.+.++.+++++++.+.|+++ +...+..|....... .++.+.+.... ..++.+.
T Consensus 240 -~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~ 308 (379)
T PRK11658 240 -DINAAIALVQLAKLEALNARRREIAARYLQALADL---------PFQPLSLPAWPHQHAWHLFIIRVDEER-CGISRDA 308 (379)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CCccCcCCCCCCceeEEEEEEEECCcc-ccCCHHH
Confidence 34466665555568999999999999999999875 333333332211122 34555553210 1156788
Q ss_pred HHHHHHhCCcEeccccccCcccccc-hHH-------HHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 493 VQKLADRHNISLSCGFLQNIFFSGE-YEQ-------ERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 493 v~~~l~~~gI~v~~G~~c~~~~~~~-~~~-------~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
+.+.|.++||.++.. |.+-.... +.. .....+. ...|.+.+|...+.|||+++++.|++
T Consensus 309 ~~~~L~~~gI~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~-----------~~~l~lP~~~~l~~~~~~~i~~~i~~ 375 (379)
T PRK11658 309 LMEALKERGIGTGLH--FRAAHTQKYYRERFPTLSLPNTEWNS-----------ERICSLPLFPDMTDADVDRVITALQQ 375 (379)
T ss_pred HHHHHHHCCCCCccc--CcCcccChhhhccCCCCCChHHHHHH-----------hCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 888899999986643 32211110 000 0011111 12788889999999999999999998
Q ss_pred hh
Q 037063 565 FL 566 (588)
Q Consensus 565 ~l 566 (588)
++
T Consensus 376 ~~ 377 (379)
T PRK11658 376 IA 377 (379)
T ss_pred HH
Confidence 75
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-20 Score=198.23 Aligned_cols=306 Identities=13% Similarity=0.060 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCC
Q 037063 180 LESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWP 259 (588)
Q Consensus 180 ~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~ 259 (588)
..+++++.+++++|.+ + .++++|++.|+.+++.++ +++||+|++....+......+...++..|+++.+++.
T Consensus 62 t~~~Le~~lA~l~G~~--~--al~~~sG~~Ai~~~l~al-~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~--- 133 (386)
T PRK06767 62 TVKLFEERMAVLEGGE--E--ALAFGSGMAAISATLIGF-LKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDM--- 133 (386)
T ss_pred chHHHHHHHHHHhCCC--c--EEEECCHHHHHHHHHHHH-hCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCC---
Confidence 3578999999999973 2 566667778999999888 8999997765443332444444556667887777654
Q ss_pred CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCc
Q 037063 260 NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPD 338 (588)
Q Consensus 260 ~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D 338 (588)
.++++++++++ ++|++|++.+++|+||...|+++| ++|+++|++|++|+++..+....++. .++|
T Consensus 134 ---~d~~~l~~~i~--------~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl~---~g~D 199 (386)
T PRK06767 134 ---ETEADIENKIR--------PNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLE---LGCD 199 (386)
T ss_pred ---CCHHHHHHhhC--------cCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCCchh---cCCc
Confidence 26788998887 689999999999999999999999 99999999999999987653222322 3489
Q ss_pred EEEeccCccCCCCCCc--eEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC-CccchhhHHH
Q 037063 339 FLICSFYKIFGENPSG--FGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES-SISGVSSKLV 415 (588)
Q Consensus 339 ~vv~S~~K~~G~~P~G--~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~-~~~~~~~~~a 415 (588)
+++.|++|++|. +.+ .|+++.+++.++.+........| +.. ++.+ +.
T Consensus 200 iv~~S~sK~l~g-~g~~~gG~v~~~~~~i~~~~~~~~~~~g-------------------------~~~~~~~a----~l 249 (386)
T PRK06767 200 AVVHSATKYIGG-HGDVVAGVTICKTRALAEKIRPMRKDIG-------------------------GIMAPFDA----WL 249 (386)
T ss_pred EEEecCcceecC-CCCceeEEEEeChHHHHHHHHHHHHHhC-------------------------CCCCHHHH----HH
Confidence 999999998872 322 58899888876554221100000 001 1101 11
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEE-EeCCCC------CCCcccEEEEEeecCCCCCc
Q 037063 416 ECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVR-IYGPKV------MFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 416 l~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~-i~~p~~------~~~rg~iv~f~~~~~~g~~i 488 (588)
+..+|+. +....++.++++.++.+.|.+. |.|+ ++-|.. ....|++++|.+.+. ..
T Consensus 250 ~~~~L~t-----l~~r~~~~~~~a~~la~~L~~~---------p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~---~~ 312 (386)
T PRK06767 250 LLRGLKT-----LAVRMDRHCDNAEKIVSFLKNH---------DAVEGVWYPEGELASRQMKRGGGVISFSIKGG---KE 312 (386)
T ss_pred HHcCCCc-----HHHHHHHHHHHHHHHHHHHHcC---------CCccEEECCCcHHHHHhCCCCCceEEEEEcCC---HH
Confidence 1223322 2445566677788888888874 4554 443421 112478999998631 12
Q ss_pred CHHHHHHHHHhCCcEeccccccC----cccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCCCCCHHHHHHHHHHH
Q 037063 489 DPALVQKLADRHNISLSCGFLQN----IFFSGEYEQERVRVLETRSGTNETRSGV--SVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 489 ~~~~v~~~l~~~gI~v~~G~~c~----~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~~t~eDv~~li~~l 562 (588)
+...+.+.|+..+|.++-|..-+ |....... . ...-.. ..|+ +.||+|+|. ||++.|++-|
T Consensus 313 ~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~-~-~~~~~~-------~~gi~~~l~R~svGl----E~~~dl~~dl 379 (386)
T PRK06767 313 ETQAFINDLHFITIAVSLGDTETLIQHPATMTHAA-I-PAELRQ-------EMGIYDNLIRLSVGL----ESWEDIVSDL 379 (386)
T ss_pred HHHHHHHhCCccEEecCCCCcCccccCCCcccccc-C-CHHHHH-------hcCCCCCeEEEEecc----CCHHHHHHHH
Confidence 34455666666677777664322 21100000 0 000011 1333 389999997 8888888888
Q ss_pred HHhhh
Q 037063 563 SRFLD 567 (588)
Q Consensus 563 ~~~l~ 567 (588)
.+.|+
T Consensus 380 ~~al~ 384 (386)
T PRK06767 380 EQALK 384 (386)
T ss_pred HHHHh
Confidence 87765
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-20 Score=195.64 Aligned_cols=164 Identities=14% Similarity=0.056 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCC
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWP 259 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~ 259 (588)
...+|++|+++.+.. .+++++|+++|+.+++.++ +++||+|+ +...|.. ....+....++.|+++.+++.+
T Consensus 63 ~~~Le~~iA~le~~~----~~~~~~sG~~Ai~~~l~al-l~~GD~Vvv~~~~Y~~-t~~l~~~~l~~~Gi~v~~v~~~-- 134 (394)
T PRK09028 63 HFAFQAAIVELEGGA----GTALYPSGAAAISNALLSF-LKAGDHLLMVDSCYEP-TRDLCDKILKGFGIETTYYDPM-- 134 (394)
T ss_pred HHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEECCCcHH-HHHHHHHhhhhcceEEEEECCC--
Confidence 458999999998763 3899999999999999999 99999966 4555644 3333334556789999887643
Q ss_pred CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCc
Q 037063 260 NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPD 338 (588)
Q Consensus 260 ~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D 338 (588)
+.++++++++ ++|++|++++++|+||.+.|+++| ++||++|+++++|+++..|....+++ +++|
T Consensus 135 ----~~e~l~~~l~--------~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~Pl~---~GaD 199 (394)
T PRK09028 135 ----IGEGIRELIR--------PNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPFE---MGVD 199 (394)
T ss_pred ----CHHHHHHhcC--------cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccccCCccc---cCce
Confidence 4577888887 789999999999999999999999 99999999999999998885455554 3499
Q ss_pred EEEeccCccCCCCCCc--eEEEEEeCcchhcc
Q 037063 339 FLICSFYKIFGENPSG--FGCLFVKKSSASVL 368 (588)
Q Consensus 339 ~vv~S~~K~~G~~P~G--~G~L~v~~~~~~~l 368 (588)
+++.|.||+++. +.+ .|+++.+++.++.+
T Consensus 200 ivv~S~tK~l~G-h~d~~~G~~~~~~~~~~~l 230 (394)
T PRK09028 200 ISIQAATKYIVG-HSDVMLGTATANEKHWDQL 230 (394)
T ss_pred EEEEeCCeEecC-CCCEEEEEEECCHHHHHHH
Confidence 999999998762 322 56555555544444
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-20 Score=194.35 Aligned_cols=168 Identities=11% Similarity=0.038 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
......++++|+++.|++ + +++++|+++|+.+++.++ +++||+|+ +...|++ ....+...++..|+++..++.
T Consensus 49 nPt~~~lE~~lA~l~g~~--~--~~~~~sG~~Ai~~al~al-l~~GD~Vl~~~~~y~~-t~~~~~~~~~~~gi~v~~~d~ 122 (377)
T TIGR01324 49 TLTHFALQDAMCELEGGA--G--CYLYPSGLAAVTNSILAF-VKAGDHVLMVDSAYEP-TRYFCDIVLKRMGVDITYYDP 122 (377)
T ss_pred CccHHHHHHHHHHHhCCC--c--EEEECcHHHHHHHHHHHh-cCCCCEEEEcCCCcHH-HHHHHHHHHHhcCcEEEEECC
Confidence 344568999999999973 3 889999999999999999 99999976 4555654 333333455678999888764
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
. +.++++++++ ++|++|++.+++|++|.+.|+++| ++|+++|+++++|+++..|....++. +
T Consensus 123 ~------~~e~l~~~i~--------~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~pl~---~ 185 (377)
T TIGR01324 123 L------IGEDIATLIQ--------PNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPLE---H 185 (377)
T ss_pred C------CHHHHHHhcC--------CCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCccc---c
Confidence 3 2277888887 789999999999999999999999 99999999999999998884333332 4
Q ss_pred CCcEEEeccCccCCCCCCc--eEEEEEeCcchhccc
Q 037063 336 KPDFLICSFYKIFGENPSG--FGCLFVKKSSASVLS 369 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G--~G~L~v~~~~~~~l~ 369 (588)
++|+++.|++|++|. +.+ .|+++.+++.++++.
T Consensus 186 gaDivv~S~tK~l~G-~~d~~gG~v~~~~~~~~~l~ 220 (377)
T TIGR01324 186 GVDISIQAGTKYLVG-HSDIMIGTVVANARTWDQLR 220 (377)
T ss_pred CceEEEecCceeccC-CCCceEEEEEeCHHHHHHHH
Confidence 599999999998873 433 677888777665554
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=190.55 Aligned_cols=288 Identities=9% Similarity=0.037 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
..++|+.|++++++++++ |++|+|+++++.+++.++ .+|+.++....|. .....++..|++++.++++..+
T Consensus 57 ~~~lr~~ia~~~~~~~~~--i~it~Ga~~~l~~~~~~l--~~g~viv~~P~y~-----~~~~~~~~~g~~~~~v~~~~~~ 127 (356)
T PRK08056 57 YRHLHQALARHHQVPASW--ILAGNGETESIFAVVSGL--KPRRAMIVTPGFA-----EYRRALQQVGCEIRRYSLREAD 127 (356)
T ss_pred HHHHHHHHHHHhCcChhh--EEECCCHHHHHHHHHHHh--CCCCEEEeCCCcH-----HHHHHHHHcCCeEEEEeccccc
Confidence 469999999999998775 999999999999999876 5676555433332 1245667889999999986333
Q ss_pred C-ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCC--cCCCC--CCCCC
Q 037063 261 L-RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATA--LGSKD--MDTLG 331 (588)
Q Consensus 261 ~-~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~--~~~~d--~~~l~ 331 (588)
+ .++ +++++.+. +++++|++++++||||..++ +++| ++|+++|+++|+|.+- +..-. ..++
T Consensus 128 ~~~~~-~~~~~~~~--------~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~- 197 (356)
T PRK08056 128 GWQLT-DAILEALT--------PDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ- 197 (356)
T ss_pred CCCcc-HHHHHhcc--------CCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHH-
Confidence 2 334 45555555 68899999999999999999 5567 8899999999999982 22100 0011
Q ss_pred CCCCCCcEEEeccCccCCCCCCceEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 332 LSLFKPDFLICSFYKIFGENPSGFGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 332 l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
+...+.++++.|++|+||.+..++|+++..+ +.++.+...... + +.+..+.
T Consensus 198 ~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~~~--~--------------------------~~~~~~~ 249 (356)
T PRK08056 198 LADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQMP--W--------------------------SINAFAA 249 (356)
T ss_pred hccCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCC--C--------------------------chhHHHH
Confidence 2223367899999999995456799998853 454544422111 0 0111110
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCH
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDP 490 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~ 490 (588)
.+...+++. ... ...+.++.++.++++.+.|+++ +++.++.+ .+..+-+.+.. +.
T Consensus 250 ---~~a~~~l~~-~~~-~~~~~~~~~~~r~~l~~~L~~~---------~~~~~~~~-----~~~~~~~~~~~------~~ 304 (356)
T PRK08056 250 ---LAGEVILQD-RAY-QQATWQWLAEEGARFYQALCAL---------PLLTVWPG-----RANYLFLRCER------PD 304 (356)
T ss_pred ---HHHHHHhCC-HHH-HHHHHHHHHHHHHHHHHHHhcC---------CCcEEcCC-----CCcEEEEEcCC------Ch
Confidence 122223321 111 3455666677778888888764 45555432 34444444432 23
Q ss_pred HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 491 ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 491 ~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
..+.+.|.++||.++.|..... .+.++||||++ +.++.++|+++|+++++
T Consensus 305 ~~~~~~l~~~gI~v~~~~~f~~------------------------~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 305 IDLQRALLTQRILIRSCANYPG------------------------LDSRYYRVAIR---SAAENERLLAALRNVLT 354 (356)
T ss_pred HHHHHHHHHCCeEEEECCCCCC------------------------CCCCEEEEEEc---CHHHHHHHHHHHHHHHc
Confidence 4566666679999998743210 11238999987 78999999999998754
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=192.56 Aligned_cols=310 Identities=15% Similarity=0.162 Sum_probs=194.4
Q ss_pred cCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCC-CchhHHHHHHHHHHhcCCEE
Q 037063 173 YGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYD-HENEAAALMIESSKKRGARV 251 (588)
Q Consensus 173 ~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e-~~s~~~~~~~~~a~~~G~~v 251 (588)
|+.......+++++++++++|++ +.++|++| ++|+.+++.++ +++||+|++... +.. .+..+...++..|+++
T Consensus 39 y~r~~~p~~~~L~~~lA~l~g~~---~~v~~~sG-~~ai~~~l~al-~~~Gd~Vl~~~~~~~~-ty~~~~~~~~~~G~~v 112 (376)
T PRK06460 39 YSREANPTVLELTKKIVELENAE---MGVAFSSG-MGAISTTALAL-LKPGNSVLVHRDMFGR-SYRFFTDYLKNWGVNV 112 (376)
T ss_pred eeCCCCccHHHHHHHHHHHhCCC---cEEEeCCH-HHHHHHHHHHH-hCCCCEEEEecCCcCc-HHHHHHHHHHhhCcEE
Confidence 44444667789999999999995 34777555 68999999998 899999776433 333 2333356678889999
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCC
Q 037063 252 SSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTL 330 (588)
Q Consensus 252 ~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l 330 (588)
..++.+ +.+.+++.++ +++++|++++++||||.+.|+++| ++|+++|++|++|+++..+....++
T Consensus 113 ~~~~~~------~~~~l~~~~~--------~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~~~l 178 (376)
T PRK06460 113 DASNPG------SDNIIEKAKS--------KRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPL 178 (376)
T ss_pred EEECCC------CHHHHHHhcC--------CCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCccccCChh
Confidence 888754 1233444334 689999999999999999999999 9999999999999998776433333
Q ss_pred CCCCCCCcEEEeccCccCCCCCC--ceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 331 GLSLFKPDFLICSFYKIFGENPS--GFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~~G~~P~--G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
. ..+|+++.|++|++|. +. ..|+++.++++++.+....... |. +..+..
T Consensus 179 ~---~~~divv~S~sK~l~G-~~~~~~G~~~~~~~l~~~l~~~~~~~-g~------------------------~~~~~~ 229 (376)
T PRK06460 179 E---LGADIVVHSASKFLAG-HNDVIAGLAAGYGKLLNVIDQMRRTL-GT------------------------SLDPHA 229 (376)
T ss_pred h---cCCCEEEeecceeccC-CCCceEEEEecCHHHHHHHHHHHHhc-CC------------------------CCCHHH
Confidence 2 2489999999998871 32 2788888877766554221100 00 000001
Q ss_pred chhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCC------------CCCcccE
Q 037063 409 GVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKV------------MFDRGPS 475 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~------------~~~rg~i 475 (588)
+ ..+..+++.+ +...+++.+.++++.+.|++. |.| +|+-|.- ....|++
T Consensus 230 a----~~~l~~~~~l-----~~r~~~~~~n~~~l~~~L~~~---------p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~ 291 (376)
T PRK06460 230 A----YLTLRGIKTL-----KIRMDVINRNAEQIAEFLEGH---------PKVVKVYYPGLKSHVDYEIARRVLKGFGGV 291 (376)
T ss_pred H----HHHHhchhhH-----HHHHHHHHHHHHHHHHHHHcC---------CCccEEECCCCCCCccHHHHHhhCCCCceE
Confidence 1 1111334333 445556667777777777763 222 4554421 1134789
Q ss_pred EEEEeecCCCCCcCHHHHHHHHHhCCcEe---cccc----ccCcccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEec
Q 037063 476 LAFNVFDWNGTRIDPALVQKLADRHNISL---SCGF----LQNIFFSGEYEQERVRVLETRSGTNETRSGV--SVVTAAL 546 (588)
Q Consensus 476 v~f~~~~~~g~~i~~~~v~~~l~~~gI~v---~~G~----~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSl 546 (588)
++|.+.+ +.+.+.++++.-.+.. +-|. .++|.... ........ .. ..|+ +.||+|+
T Consensus 292 ~s~~~~~------~~~~~~~~~~~l~~~~~~~s~Gg~~sl~~~p~~~~-~~~~~~~~-~~-------~~gi~~~liR~sv 356 (376)
T PRK06460 292 LSFEVNG------GQESALKVMKSLKLIIPAQTLGGVNSVISHPATMS-HRTLSLEE-RK-------IVGITDSLLRLSV 356 (376)
T ss_pred EEEEEcC------cHHHHHHHHHhCCcceeccCCCCCceEEeCccccc-cccCCHHH-HH-------hcCCCCCeEEEEe
Confidence 9999864 1445667777654422 2221 11111000 00000000 01 1333 3899999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhh
Q 037063 547 GCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 547 g~~~t~eDv~~li~~l~~~l~~ 568 (588)
|. ||++.|++-|.+.|+.
T Consensus 357 Gl----E~~~dl~~dl~~al~~ 374 (376)
T PRK06460 357 GI----EDVNDLIEDLDRALST 374 (376)
T ss_pred cc----CCHHHHHHHHHHHHHh
Confidence 97 8899999988888765
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-19 Score=190.53 Aligned_cols=298 Identities=14% Similarity=0.052 Sum_probs=193.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.+..+++++++++++|.+ ..++|++|+ +|+..++..+. ..+|+.|+++..+|...... ++..|++++.++.
T Consensus 89 ~~~~~~le~~la~~~g~~---~~~~~~SG~-~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~----~~~~g~~~~~~~~ 160 (406)
T PRK13393 89 NHYHVLLEAELADLHGKE---AALLFTSGY-VSNWAALSTLGSRLPGCVILSDELNHASMIEG----IRHSRAEKRIFRH 160 (406)
T ss_pred hHHHHHHHHHHHHHhCCC---cEEEeCCcH-HHHHHHHHHhhcCCCCCEEEEccchhHHHHHH----HHHcCCeEEEeCC
Confidence 346789999999999973 346666655 57676666552 22677777654444323333 2446888777654
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC-C------CC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK-D------MD 328 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~-d------~~ 328 (588)
.|.+++++.+.. ...+++++|++++++|++|.+.|+++| ++|+++|+++++|++|..+. . ..
T Consensus 161 ------~d~~~l~~~l~~----~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~ 230 (406)
T PRK13393 161 ------NDPADLERKLSD----LDPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAE 230 (406)
T ss_pred ------CCHHHHHHHHHh----ccCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhh
Confidence 267788877751 112468999999999999999999999 99999999999999987542 0 01
Q ss_pred CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 329 TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
..++. .++|+++.++.|.+|. .| |+++.++++++.+.....+ . .| .++.+..
T Consensus 231 ~~~~~-~~~~i~~~tlsKa~g~--~G-G~~~~~~~~~~~l~~~~~~---~-------------------~~--t~~~~p~ 282 (406)
T PRK13393 231 REGLA-DRLTIIEGTLAKAFGV--MG-GYITGSAALCDFIRSFASG---F-------------------IF--TTSLPPA 282 (406)
T ss_pred hcCCC-CCCeEEEEeCchhhcc--cC-ceeeCCHHHHHHHHHhCcC---c-------------------ee--cCccCHH
Confidence 11221 2368888999999993 35 7777777766655432111 0 01 1122222
Q ss_pred chhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 409 GVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
.. +++.++|+++.+.+ ....+...+.+++++.|.++ |. .++. ..++++.+.+.+. .
T Consensus 283 ~~---aa~~aaL~~~~~~~--~~~~~~~~~~~~l~~~L~~~-------g~---~~~~-----~~~~i~~v~~~~~----~ 338 (406)
T PRK13393 283 VA---AGALASVRHLKASS--AERERHQDRVARLRARLDKA-------GI---PHLP-----NPSHIVPVMVGDP----V 338 (406)
T ss_pred HH---HHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHc-------CC---CcCC-----CCCCeEEEEeCCH----H
Confidence 22 45568888876643 22456678888999999875 22 2221 3467777755331 1
Q ss_pred CHHHHHHHH-HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 489 DPALVQKLA-DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 489 ~~~~v~~~l-~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
....+.+.| +++||.++.+..- .. ..|...||+|++.++|.|||+++++.|+++++
T Consensus 339 ~~~~l~~~L~~~~Gi~v~~~~~p--~~---------------------p~g~~~iRis~~~~~t~edid~l~~~l~~~~~ 395 (406)
T PRK13393 339 LCKQISDELLDRYGIYVQPINYP--TV---------------------PRGTERLRITPSPLHTDADIEHLVQALSEIWA 395 (406)
T ss_pred HHHHHHHHHHHhCCEEEEeECCC--CC---------------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 234555555 4579999864210 00 02334899999999999999999999999876
Q ss_pred h
Q 037063 568 A 568 (588)
Q Consensus 568 ~ 568 (588)
+
T Consensus 396 ~ 396 (406)
T PRK13393 396 R 396 (406)
T ss_pred h
Confidence 5
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=191.66 Aligned_cols=298 Identities=12% Similarity=0.019 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
....+++++|+++. . ++ .++++|+++|+.+++.++ +++||+|++..+.+..........+++.|++++.++.+
T Consensus 51 p~~~~Le~~lA~l~--~-~~--~v~~~sG~~Ai~~~l~al-l~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~- 123 (366)
T PRK07582 51 PTWRALEAALGELE--G-AE--ALVFPSGMAAITAVLRAL-LRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTA- 123 (366)
T ss_pred ccHHHHHHHHHHHc--C-CC--EEEECCHHHHHHHHHHHh-cCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCC-
Confidence 34568999999998 2 22 677777788999999998 89999977644333324443334556789999999875
Q ss_pred CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCC
Q 037063 259 PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKP 337 (588)
Q Consensus 259 ~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~ 337 (588)
+. .. .+. +++++|++..++|++|.+.|+++| ++|+++|++++||+++..+....+++ +.+
T Consensus 124 ~~-------~~-~~~--------~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~---~g~ 184 (366)
T PRK07582 124 GM-------AE-AAL--------AGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLE---LGA 184 (366)
T ss_pred Ch-------HH-Hhc--------cCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccccCchh---cCC
Confidence 21 11 233 578999999999999999999999 99999999999999975442233443 348
Q ss_pred cEEEeccCccCCCCCCc--eEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHH
Q 037063 338 DFLICSFYKIFGENPSG--FGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKL 414 (588)
Q Consensus 338 D~vv~S~~K~~G~~P~G--~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~ 414 (588)
|+++.|++|+++. +.| +|+++.+ +++++++...... ..++++.... .
T Consensus 185 Divv~S~sK~l~G-~~g~~~G~v~~~~~~l~~~l~~~~~~--------------------------~g~~~~~~~a---~ 234 (366)
T PRK07582 185 DLVVASDTKALTG-HSDLLLGYVAGRDPELMAAVERWRLL--------------------------AGAIPGPFEA---W 234 (366)
T ss_pred cEEEecccccccC-CCCeeEEEEEcCcHHHHHHHHHHHHH--------------------------hCCCCCHHHH---H
Confidence 9999999997752 556 5888875 4554444322100 0011111110 1
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCC---C---------CCcccEEEEEee
Q 037063 415 VECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKV---M---------FDRGPSLAFNVF 481 (588)
Q Consensus 415 al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~---~---------~~rg~iv~f~~~ 481 (588)
.+..+|+.+ +...++..+.+..+.+.|.+. |.| +++-|.- + ...|++++|.+.
T Consensus 235 l~~r~l~tl-----~~R~~~~~~na~~la~~L~~~---------p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~ 300 (366)
T PRK07582 235 LAHRSLGTL-----GLRFARQCANALAVAELLAGH---------PAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA 300 (366)
T ss_pred HHHhccccH-----HHHHHHHHHHHHHHHHHHHhC---------CCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC
Confidence 222344432 333445555666666666653 333 3443321 1 125889999985
Q ss_pred cCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHH
Q 037063 482 DWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAF 561 (588)
Q Consensus 482 ~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~ 561 (588)
+ .+.+.+++++.+|....- +.|........ ...... ....+.||+|+|+.+.++.|+.|.++
T Consensus 301 ~-------~~~~~~~~~~l~~~~~~~---s~G~~~sl~~~-~~~~~~-------~~~~~liR~svGlE~~~dli~dl~~a 362 (366)
T PRK07582 301 D-------AAAAERFVAASRLVVAAT---SFGGVHTSADR-RARWGD-------AVPEGFVRLSCGIEDTDDLVADLERA 362 (366)
T ss_pred C-------HHHHHHHHHhCCcceecc---cCCCccchhhh-HHHcCC-------CCCCCeEEEEeccCCHHHHHHHHHHH
Confidence 3 677888898888754321 11111111100 000000 01123899999997777777777777
Q ss_pred HHH
Q 037063 562 VSR 564 (588)
Q Consensus 562 l~~ 564 (588)
|++
T Consensus 363 l~~ 365 (366)
T PRK07582 363 LDA 365 (366)
T ss_pred Hhh
Confidence 653
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=194.72 Aligned_cols=304 Identities=13% Similarity=0.112 Sum_probs=194.4
Q ss_pred HHHHHHHHHHh----C--CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEE-
Q 037063 182 SKIRKRIMDFM----N--ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSA- 254 (588)
Q Consensus 182 ~~~r~~ia~~l----g--a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v- 254 (588)
.++|+.|++++ | ++++ +|++|+|+++|+.+++.++ +++||+|++....+... ...++..|++++.+
T Consensus 73 ~~lr~~ia~~~~~~~g~~~~~~--~i~it~G~~~al~~~~~~~-~~~gd~Vl~~~p~y~~~----~~~~~~~g~~~v~~~ 145 (398)
T PRK08363 73 PELREAIVKREKRKNGVDITPD--DVRVTAAVTEALQLIFGAL-LDPGDEILIPGPSYPPY----TGLVKFYGGVPVEYR 145 (398)
T ss_pred HHHHHHHHHHHHHhcCCCCChh--hEEEeCCHHHHHHHHHHHh-CCCCCEEEEcCCCCcch----HHHHHHcCCEEEEec
Confidence 36777777776 4 4554 4999999999999999999 89999977654433212 34556789888887
Q ss_pred eccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcC-CCC--C
Q 037063 255 EFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALG-SKD--M 327 (588)
Q Consensus 255 ~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~-~~d--~ 327 (588)
+.+..+..+|.+++++.+. ++++++++++++|+||..++ +++| ++|+++|+++|+|++... ..+ .
T Consensus 146 ~~~~~~~~~d~~~l~~~~~--------~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~ 217 (398)
T PRK08363 146 TIEEEGWQPDIDDIRKKIT--------EKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKH 217 (398)
T ss_pred cccccCCcCCHHHHHhhCC--------cceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcc
Confidence 4543344688999998887 67899999999999999999 5666 889999999999998321 100 0
Q ss_pred CC-CCCCCCCCcEEEeccCccCCCCCCceEEEEE--eCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 328 DT-LGLSLFKPDFLICSFYKIFGENPSGFGCLFV--KKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 328 ~~-l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v--~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
.. ..+.....-+++.||+|.|+.++.++|++++ ++++++.+....... .. . ..+.
T Consensus 218 ~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~-~~--------------------~-~~~~ 275 (398)
T PRK08363 218 VSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKL-AR--------------------I-RLCP 275 (398)
T ss_pred cCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHH-hc--------------------c-cccC
Confidence 01 1111111235678999987765677999998 555544433221000 00 0 0011
Q ss_pred CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEE-EeecC
Q 037063 405 SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAF-NVFDW 483 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f-~~~~~ 483 (588)
..+.+ .++..+|....+. ++++.++++..++++.+.|.++ ++++++.| .++++.+ .+.+.
T Consensus 276 s~~~q----~~~~~~l~~~~~~-l~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~p-----~g~~~~~~~l~~~ 336 (398)
T PRK08363 276 NTPAQ----FAAIAGLTGPMDY-LEEYMKKLKERRDYIYKRLNEI---------PGISTTKP-----QGAFYIFPRIEEG 336 (398)
T ss_pred ChHHH----HHHHHHHhCChHH-HHHHHHHHHHHHHHHHHHHhcC---------CCCEecCC-----CeEEEEEEEeccC
Confidence 11111 2222334321111 4556677777788888888763 45665543 4566665 34331
Q ss_pred CCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 484 NGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 484 ~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
. ..-+.+.+.+++.++||.++.|.... . .+..+||+|++ .+.+++++.++.|+
T Consensus 337 ~-~~~~~~~~~~~l~~~gV~v~~g~~f~----------------~--------~~~~~iRis~~--~~~~~l~~~l~~l~ 389 (398)
T PRK08363 337 P-WKDDKEFVLDVLHEAHVLFVHGSGFG----------------E--------YGAGHFRLVFL--PPVEILEEAMDRFE 389 (398)
T ss_pred C-CCCHHHHHHHHHHhCCEEEeCchhhC----------------C--------CCCCeEEEEec--CCHHHHHHHHHHHH
Confidence 0 00124456788899999998874321 0 12238999986 46899999999999
Q ss_pred Hhhhh
Q 037063 564 RFLDA 568 (588)
Q Consensus 564 ~~l~~ 568 (588)
+++.+
T Consensus 390 ~~~~~ 394 (398)
T PRK08363 390 EFMRE 394 (398)
T ss_pred HHHHH
Confidence 88765
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.9e-20 Score=195.71 Aligned_cols=162 Identities=14% Similarity=0.152 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+.+++++++++|++ +.|+|++|+ +|+.+++.++ +++||+|+ +..+|.++ ...+.+.+++.|+++++++
T Consensus 68 ~pt~~~le~~la~l~g~~---~~v~fsSG~-~Ai~~al~~l-l~~Gd~VI~~~~~y~~t-~~~~~~~l~~~Gi~v~~vd- 140 (437)
T PRK05613 68 NPTVEALENRIASLEGGV---HAVAFASGQ-AAETAAILNL-AGAGDHIVTSPRLYGGT-ETLFLVTLNRLGIEVTFVE- 140 (437)
T ss_pred ChHHHHHHHHHHHHhCCC---eEEEeCCHH-HHHHHHHHHh-cCCCCEEEECCCccHHH-HHHHHHHHHhcCeEEEEEC-
Confidence 566789999999999983 346666666 7888888888 89999966 56677764 3333456678899999997
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ + .|+++++++|+ ++|++|++.+.+|++|.+.|+++| ++|+++|++++||+++..|....++. +
T Consensus 141 ~-~---~d~e~l~~~l~--------~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~~~p~~---~ 205 (437)
T PRK05613 141 N-P---DDPESWQAAVQ--------PNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLE---L 205 (437)
T ss_pred C-C---CCHHHHHHhCC--------ccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccccChHH---h
Confidence 3 2 27889999988 789999999999999999999999 99999999999999988773333332 3
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEe
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVK 361 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~ 361 (588)
++|++++|+||++|....|+|.+++.
T Consensus 206 GaDivv~S~~K~l~G~gd~~gG~vv~ 231 (437)
T PRK05613 206 GADVVVASLTKFYTGNGSGLGGVLID 231 (437)
T ss_pred CCCEEEeeccceecCCCcceeEEEEe
Confidence 49999999999888212345776763
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=192.06 Aligned_cols=307 Identities=18% Similarity=0.096 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
...++++++|++++|++ + .++++|+++|+.+++.++ +++||+|++....+......+...+...|+++.+++.+
T Consensus 59 p~~~~le~~lA~l~g~~---~-av~~~sG~~Ai~~~l~al-~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~- 132 (391)
T TIGR01328 59 PTVSNLEGRIAFLEGTE---A-AVATSSGMGAIAATLLTI-LKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMA- 132 (391)
T ss_pred chHHHHHHHHHHHhCCC---c-EEEECCHHHHHHHHHHHH-hCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCC-
Confidence 44678999999999984 2 677888889999999888 89999977654433323333456667889999998764
Q ss_pred CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCC
Q 037063 259 PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKP 337 (588)
Q Consensus 259 ~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~ 337 (588)
++++++++++ ++|++|++.+++|++|...|+++| ++|+++|+++++|+++..+....+++ ..+
T Consensus 133 -----d~e~l~~~i~--------~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~~~~---~g~ 196 (391)
T TIGR01328 133 -----IPEEVKAHIK--------DNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPVA---LGV 196 (391)
T ss_pred -----CHHHHHHhhc--------cCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCCchh---cCC
Confidence 6788998887 789999999999999999999999 99999999999999987763223332 348
Q ss_pred cEEEeccCccCCCCCCc--eEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHH
Q 037063 338 DFLICSFYKIFGENPSG--FGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLV 415 (588)
Q Consensus 338 D~vv~S~~K~~G~~P~G--~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~a 415 (588)
|+++.|++|++|. +.+ .|+++.+++++++++...... ..| ..+... .+
T Consensus 197 Divv~S~sK~lgg-~g~~~gG~v~~~~~li~~l~~~~~~~-------------------------~~g-~~l~~~---~a 246 (391)
T TIGR01328 197 DVVVHSATKYIGG-HGDVVAGLICGKAELLQQIRMVGIKD-------------------------MTG-SVISPF---DA 246 (391)
T ss_pred CEEEccccccccC-CCCceEEEEEcCHHHHHHHHHHHHHh-------------------------CCC-CCCCcH---HH
Confidence 9999999999983 332 577777777766554211000 001 001111 01
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCC------------CCcccEEEEEeec
Q 037063 416 ECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVM------------FDRGPSLAFNVFD 482 (588)
Q Consensus 416 l~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~------------~~rg~iv~f~~~~ 482 (588)
..++..++. +....++..+.+..+.+.|++. |.| +++-|.-. ..-|++++|.+.+
T Consensus 247 -~l~l~~L~t--l~~r~~~~~~na~~la~~L~~~---------p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~ 314 (391)
T TIGR01328 247 -WLILRGLKT--LNIRMKRHSENAMKVAEYLKSH---------PAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKG 314 (391)
T ss_pred -HHHHhCcCc--HHHHHHHHHHHHHHHHHHHHhC---------CCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCC
Confidence 122332322 2444555666677777777763 333 33333211 1237899999863
Q ss_pred CCCCCcCHHHHHHHHHhCCcE---eccccc----cCcccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCCCCCHH
Q 037063 483 WNGTRIDPALVQKLADRHNIS---LSCGFL----QNIFFSGEYEQERVRVLETRSGTNETRSGV--SVVTAALGCLTNFE 553 (588)
Q Consensus 483 ~~g~~i~~~~v~~~l~~~gI~---v~~G~~----c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~~t~e 553 (588)
+.+.+.+++++-.+. .+-|.. |++.....+. ..... .. ..|+ +.||+|+|. |
T Consensus 315 ------~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~-~~~~~-~~-------~~gi~~~liR~svGl----E 375 (391)
T TIGR01328 315 ------GFAGAKKLLNNLKLIRLAVSLGDAETLIQHPASMTHAV-VPKEE-RE-------AAGITDGMIRLSVGL----E 375 (391)
T ss_pred ------CHHHHHHHHHhCCcceEecCCCCCcccCcCCCcccccc-CCHHH-HH-------hcCCCCCeEEEEeCc----C
Confidence 134556666665543 222321 2221111000 00000 00 1333 389999997 8
Q ss_pred HHHHHHHHHHHhhhh
Q 037063 554 DTYRLWAFVSRFLDA 568 (588)
Q Consensus 554 Dv~~li~~l~~~l~~ 568 (588)
|++.|++-|.+.|++
T Consensus 376 ~~~dl~~dl~~al~~ 390 (391)
T TIGR01328 376 DADDLIADLKQALDA 390 (391)
T ss_pred CHHHHHHHHHHHHhh
Confidence 899999988887753
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=195.06 Aligned_cols=291 Identities=14% Similarity=0.085 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
...+++++.+++++| ++ .+++++|+|+|+.+++.++ +++||+|++. ..|.+ .... ...++..|++++.++.+
T Consensus 32 ~~~~~l~~~~a~~~g--~~--~~~~~~~gt~a~~~~~~~l-~~~gd~v~~~~~~~~~-~~~~-~~~~~~~g~~~~~v~~~ 104 (338)
T cd06502 32 PTTAKLEARAAELFG--KE--AALFVPSGTAANQLALAAH-TQPGGSVICHETAHIY-TDEA-GAPEFLSGVKLLPVPGE 104 (338)
T ss_pred HHHHHHHHHHHHHhC--CC--eEEEecCchHHHHHHHHHh-cCCCCeEEEecCccee-eecC-CcHHHHcCceEEeecCC
Confidence 456799999999999 33 3999999999999999998 8999997654 44433 1111 11234479999999875
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCCCcCC----CCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYM---WM-SVAAEKGWHVLLDATALGS----KDMDT 329 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa~~~~----~d~~~ 329 (588)
++.+|.++|++++++. .....+++++|++++++|+ |..++.+ +| ++|+++|+++++|+++..+ ... .
T Consensus 105 --~~~~d~~~l~~~i~~~-~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~-~ 179 (338)
T cd06502 105 --NGKLTPEDLEAAIRPR-DDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGV-A 179 (338)
T ss_pred --CCcCCHHHHHHHhhcc-CCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC-C
Confidence 3679999999999721 0011137899999999996 6655654 46 8899999999999975221 001 1
Q ss_pred CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 330 LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 330 l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
+......+|+++.|+||+||. | |.++++.++++++.+.+.... ..++.+..+
T Consensus 180 ~~~~~~~~d~~~~s~sK~~~~-~-~g~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~ 231 (338)
T cd06502 180 LKTYKSGVDSVSFCLSKGGGA-P-VGAVVVGNRDFIARARRRRKQ--------------------------AGGGMRQSG 231 (338)
T ss_pred HHHHHhcCCEEEEeccccCCC-c-cceEEECCHHHHHHHHHHHHH--------------------------hCCChhhHH
Confidence 110113489999999999995 4 434556677777666533211 001111111
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcC
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRID 489 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~ 489 (588)
+ ....++..++.-+..++.++...+++++.+.|.++ | +.++. ..++++.+.+.. +
T Consensus 232 ~----~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~-------~---~~~~~-----~~~~~~~v~~~~--~---- 286 (338)
T cd06502 232 F----LAAAGLAALENDLWLRRLRHDHEMARRLAEALEEL-------G---GLESE-----VQTNIVLLDPVE--A---- 286 (338)
T ss_pred H----HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc-------C---CCccc-----ccCCeEEEecCC--c----
Confidence 1 11233333433345666788888899999999885 2 22222 245677666532 1
Q ss_pred HHHHHHHHH------hCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 490 PALVQKLAD------RHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 490 ~~~v~~~l~------~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
.....++++ ++||.++.. +...||++++++++.+|++++++.++
T Consensus 287 ~~~~~~l~~~l~~~~~~gi~~~~~------------------------------~~~~lRi~~~~~~~~~~i~~~~~~l~ 336 (338)
T cd06502 287 NAVFVELSKEAIERRGEGVLFYAW------------------------------GEGGVRFVTHWDTTEEDVDELLSALK 336 (338)
T ss_pred cHHHHHHHHHHHHhhhCCEEEEec------------------------------CCCeEEEEeecCCCHHHHHHHHHHHh
Confidence 122223332 468876532 01389999999999999999999986
Q ss_pred H
Q 037063 564 R 564 (588)
Q Consensus 564 ~ 564 (588)
+
T Consensus 337 ~ 337 (338)
T cd06502 337 A 337 (338)
T ss_pred c
Confidence 4
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-19 Score=191.99 Aligned_cols=303 Identities=10% Similarity=0.011 Sum_probs=192.3
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCC-CchhHHHHHHHHHHhcCCEE--EEEeccCCC
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYD-HENEAAALMIESSKKRGARV--SSAEFAWPN 260 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e-~~s~~~~~~~~~a~~~G~~v--~~v~~~~~~ 260 (588)
+++++++++|.+ +.++++++++.|+..++.++ +++||+|+++.. |.+....+.. . ...+..+ ..++++..+
T Consensus 79 ~~~~la~l~g~~---~alv~~~SG~~A~~~~l~al-~~~GD~Vl~~~~~~~~~~~~g~~-~-~~~~~~~~~~~~~~~~~~ 152 (416)
T PRK13034 79 AIERAKQLFGCD---YANVQPHSGSQANGAVYLAL-LKPGDTILGMSLSHGGHLTHGAK-V-SLSGKWYNAVQYGVDRLT 152 (416)
T ss_pred HHHHHHHHhCCC---ceEEecCCcHHHHHHHHHHh-cCCCCEEEEcCccceeeeecCCc-c-eeccceeeeEEccccccc
Confidence 666999999985 45677889999999999999 999999876544 4321111100 0 0012222 244444345
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCC-CCCCCCc
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLG-LSLFKPD 338 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~-l~~~~~D 338 (588)
+.+|++++++++.. .++++|++.+ ..+|...|+++| ++|+++|+++++|++|.++.-..... .....+|
T Consensus 153 ~~~d~~~le~~l~~-------~~~klVi~~~--~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~D 223 (416)
T PRK13034 153 GLIDYDEVEELAKE-------HKPKLIIAGF--SAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAH 223 (416)
T ss_pred CCcCHHHHHHHHhh-------cCCeEEEECC--CccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCce
Confidence 67899999998862 3578887754 347899999999 99999999999999988762111110 0112389
Q ss_pred EEEeccCccCCCCCCceEEEEEeCcch-hcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHH
Q 037063 339 FLICSFYKIFGENPSGFGCLFVKKSSA-SVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVEC 417 (588)
Q Consensus 339 ~vv~S~~K~~G~~P~G~G~L~v~~~~~-~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~ 417 (588)
++++|+||+++. |.| |+++.+++.+ +.++...+. ++. +++.... .+++.
T Consensus 224 i~~~s~~K~l~g-~~G-G~v~~~~~~~~~~~~~~~~~--~~~-----------------------~~~~~~~---~aa~~ 273 (416)
T PRK13034 224 VVTTTTHKTLRG-PRG-GMILTNDEEIAKKINSAVFP--GLQ-----------------------GGPLMHV---IAAKA 273 (416)
T ss_pred EEEEeCcccCCC-CCC-eEEEECcHHHHHHHHhhcCC--ccc-----------------------CCccHHH---HHHHH
Confidence 999999998842 666 6666665443 444443322 110 0111111 13434
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHH
Q 037063 418 KGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLA 497 (588)
Q Consensus 418 ~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l 497 (588)
.++..+...+.....+++..++++|+++|.++ ++++..+. ..++++.+.+.+.. .....+.+.|
T Consensus 274 ~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~----------G~~~~~~~---~~t~i~~v~~~~~~---~~~~~~~~~L 337 (416)
T PRK13034 274 VAFGEALQPEFKTYAKQVIANAQALAEVLKER----------GYDLVSGG---TDNHLLLVDLRPKG---LSGKDAEQAL 337 (416)
T ss_pred HHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc----------CCEeccCC---CCCcEEEEEcCCCC---CCHHHHHHHH
Confidence 44444332234567899999999999999875 34444331 23567666665422 4567787888
Q ss_pred HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCC----CCCHHHHHHHHHHHHHhhh
Q 037063 498 DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGC----LTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 498 ~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~----~~t~eDv~~li~~l~~~l~ 567 (588)
.+.||.+..-. -|+. ... ......||+|++. ..+++||+++++.|++.+.
T Consensus 338 ~~~GI~v~~~~--~p~~-----------~~~-------p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~ 391 (416)
T PRK13034 338 ERAGITVNKNT--VPGD-----------TES-------PFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLD 391 (416)
T ss_pred HhCCcEEeccC--CCCC-----------CcC-------CCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999886310 0000 000 0112279999998 4559999999999999876
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=190.76 Aligned_cols=167 Identities=17% Similarity=0.143 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcC-CCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVY-DHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~-e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+.++++|+++.|.+ + +++++|+++|+.+++.++ +++||+|++.. .|++ .+..+..+++..|+++..++.
T Consensus 51 ~pt~~~L~~~lA~l~g~~--~--~i~~~sg~~Ai~~~l~~l-~~~GD~Vl~~~~~y~~-~~~~~~~~~~~~gi~v~~vd~ 124 (386)
T PRK08045 51 NPTRDVVQRALAELEGGA--G--AVLTNTGMSAIHLVTTVF-LKPGDLLVAPHDCYGG-SYRLFDSLAKRGCYRVLFVDQ 124 (386)
T ss_pred CccHHHHHHHHHHHhCCC--e--EEEECCHHHHHHHHHHHH-cCCCCEEEEcCCCcHH-HHHHHHHHHhhCCeEEEEeCC
Confidence 345679999999999962 3 999999999999999998 89999977554 4543 333334555556667777642
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
.|.++++++++ +++++|++++++|+||.+.|+++| ++|+++|++|++|++...+....+++ +
T Consensus 125 ------~d~e~l~~~l~--------~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl~---~ 187 (386)
T PRK08045 125 ------GDEQALRAALA--------EKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLA---L 187 (386)
T ss_pred ------CCHHHHHHhcc--------cCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCchh---h
Confidence 47889998887 689999999999999999999999 99999999999999987763333443 3
Q ss_pred CCcEEEeccCccCCCCCCc--eEEEEEe-Ccchhcc
Q 037063 336 KPDFLICSFYKIFGENPSG--FGCLFVK-KSSASVL 368 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G--~G~L~v~-~~~~~~l 368 (588)
.+|+++.|++|+++. +.+ .|+++++ +++++++
T Consensus 188 gaDivv~S~tK~l~G-~~d~~~G~vi~~~~~~~~~l 222 (386)
T PRK08045 188 GADLVLHSCTKYLNG-HSDVVAGVVIAKDPDVVTEL 222 (386)
T ss_pred CCCEEEeecceeccC-CCCceeEEEEeCcHHHHHHH
Confidence 489999999997762 544 5777664 3444433
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-19 Score=188.91 Aligned_cols=308 Identities=12% Similarity=0.038 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCc-eEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDY-TLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~-~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++.+.+.+.+.+.+|.+.+.. +|++|+|+++|+.+++.++ +++||+|++....+... ...++..|++++.++++
T Consensus 67 ~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~-~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~~~~~ 141 (387)
T PRK08912 67 ELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLAL-VEPGDEVVLFQPLYDAY----LPLIRRAGGVPRLVRLE 141 (387)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchhh----HHHHHHcCCEEEEEecC
Confidence 333344444444445433323 5999999999999999998 88999977655443322 34567789999999987
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC----CCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG----SKDMDT 329 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~----~~d~~~ 329 (588)
..++.++.++|++.+. ++++++++++++||||..+|.++ | ++|+++++++|+|.+..- +....+
T Consensus 142 ~~~~~~~~~~l~~~~~--------~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 213 (387)
T PRK08912 142 PPHWRLPRAALAAAFS--------PRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIP 213 (387)
T ss_pred cccCcCCHHHHHHHhC--------ccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcC
Confidence 4467899999999887 67899999999999999999655 6 789999999999998421 100111
Q ss_pred C-CCCC-CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCc
Q 037063 330 L-GLSL-FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407 (588)
Q Consensus 330 l-~l~~-~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~ 407 (588)
+ .+.. ...++++.|++|.||.+..++|++++++++++.+....... ..+++..
T Consensus 214 ~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~l~~~~~~~-------------------------~~~~~~~ 268 (387)
T PRK08912 214 LMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPLLRVLAKAHQFL-------------------------TFTTPPN 268 (387)
T ss_pred hhhCCCccCceEEEeechhhccCcCceeEEEecCHHHHHHHHHHHhhc-------------------------cccCChH
Confidence 1 1111 23579999999999953445999999988876654322100 0011111
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTR 487 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~ 487 (588)
.+ .++..++...... ++++.++.+..++.+.+.|.++ +++++.+ ..+.++.+.+... +..
T Consensus 269 ~q----~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~----~g~~~l~~~l~~~-~~~ 328 (387)
T PRK08912 269 LQ----AAVAYGLGKPDDY-FEGMRADLARSRDRLAAGLRRI----------GFPVLPS----QGTYFLTVDLAPL-GLA 328 (387)
T ss_pred HH----HHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHhC----------CCcccCC----CcceEEEeccccc-CCC
Confidence 11 2222333211111 3556677777788888888874 2444433 1233444455431 111
Q ss_pred cCHHHHH-HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 488 IDPALVQ-KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 488 i~~~~v~-~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
.+...+. ++++++||.+.+|..... . ..+.+++|++++. ..++++..++.|++++
T Consensus 329 ~~~~~~~~~l~~~~gV~v~pg~~f~~---------------~-------~~~~~~iRl~~~~--~~~~l~~~l~rl~~~l 384 (387)
T PRK08912 329 EDDVAFCRRLVEEAGVAAIPVSAFYE---------------E-------DPVTSVVRFCFAK--RDATLDEAVERLAAAR 384 (387)
T ss_pred CCHHHHHHHHHhcCCEEEecchhhCC---------------C-------CCCCCEEEEEEeC--CHHHHHHHHHHHHHHH
Confidence 3344454 456788999988732210 0 0122399999985 5899999999988876
Q ss_pred hh
Q 037063 567 DA 568 (588)
Q Consensus 567 ~~ 568 (588)
+.
T Consensus 385 ~~ 386 (387)
T PRK08912 385 RR 386 (387)
T ss_pred hc
Confidence 53
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=194.13 Aligned_cols=162 Identities=16% Similarity=0.096 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+.++++|+++.|++ + .+++++++.|+.+++.++ +++||+|+ ....|.. .+..+...+++.|++++.++
T Consensus 68 ~p~~~~Le~~lA~l~g~~---~-av~~sSG~aAi~~al~al-l~~Gd~Vv~~~~~y~~-t~~~~~~~l~~~Gi~v~~vd- 140 (436)
T PRK07812 68 NPTQDVVEQRIAALEGGV---A-ALLLASGQAAETFAILNL-AGAGDHIVSSPRLYGG-TYNLFHYTLPKLGIEVSFVE- 140 (436)
T ss_pred CchHHHHHHHHHHHhCCC---e-EEEEccHHHHHHHHHHHH-hCCCCEEEEeCCcchH-HHHHHHHHhhcCeEEEEEEC-
Confidence 344668999999999984 2 677788899999999998 89999966 5556654 44444555677899998885
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ . .++++++++|+ ++|++|++.+++|++|.+.|+++| ++||++|++++||+++..|....++. +
T Consensus 141 d-~---~d~e~l~~ai~--------~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~---~ 205 (436)
T PRK07812 141 D-P---DDLDAWRAAVR--------PNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLE---H 205 (436)
T ss_pred C-C---CCHHHHHHhCC--------CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCchh---c
Confidence 3 2 27888988887 789999999999999999999999 99999999999999988774333332 4
Q ss_pred CCcEEEeccCccCCCCCCc--eEEEEEeCc
Q 037063 336 KPDFLICSFYKIFGENPSG--FGCLFVKKS 363 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G--~G~L~v~~~ 363 (588)
++|+++.|+||++| +.| +|.+++...
T Consensus 206 GaDivv~S~tK~lg--g~G~~i~G~vv~~~ 233 (436)
T PRK07812 206 GADIVVHSATKYLG--GHGTAIAGVIVDGG 233 (436)
T ss_pred CCCEEEEecccccC--CCCCeEEEEEEcCC
Confidence 59999999999888 444 788887544
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-19 Score=191.17 Aligned_cols=366 Identities=12% Similarity=0.047 Sum_probs=235.9
Q ss_pred CCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCch--hHHHHHHHHHHHHHhCCC
Q 037063 118 IGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEE--SELESKIRKRIMDFMNIS 195 (588)
Q Consensus 118 a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~--~~~~~~~r~~ia~~lga~ 195 (588)
++-...|+.+++++...+.... ..+.+.. .+|++.+ .+++.-+.++..++||++
T Consensus 155 ASEN~~S~av~~algS~ltnkY-----------------------aEG~pG~-Ryy~G~~~iD~iE~la~era~~lF~~~ 210 (586)
T PLN02271 155 ASENFVCRAVMEALGSHLTNKY-----------------------SEGMPGA-RYYTGNQYIDQIERLCCERALAAFGLD 210 (586)
T ss_pred cccccCCHHHHHHhcCcccccC-----------------------CCCCCCC-cCCCCChhHHHHHHHHHHHHHHHhCCc
Confidence 7778899999999754443211 1122222 2344432 678888899999999987
Q ss_pred CCCc-eEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHH----HHHHhcCCEEEEEe--ccCCCCccCHHH
Q 037063 196 EDDY-TLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMI----ESSKKRGARVSSAE--FAWPNLRIHSGK 267 (588)
Q Consensus 196 ~~e~-~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~----~~a~~~G~~v~~v~--~~~~~~~i~~e~ 267 (588)
.+++ .=|---+++.|+..+..++ ++|||+|+. +.+|......... ..+...|..+..++ ++.+++.+|.++
T Consensus 211 ~~~~gaNVQp~SGs~AN~aV~~AL-l~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~ 289 (586)
T PLN02271 211 SEKWGVNVQPYSCTSANFAVYTGL-LLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDK 289 (586)
T ss_pred ccccccceeeccHHHHHHHHHHHh-cCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHH
Confidence 6443 1233348888999999999 999999774 6655542222210 22344576666666 655678999999
Q ss_pred HHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCC---CCCCCcEEEec
Q 037063 268 LMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGL---SLFKPDFLICS 343 (588)
Q Consensus 268 l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l---~~~~~D~vv~S 343 (588)
|++.+.. .+++||++.+..++ ..+|+++| ++|+++|+++++|++|.+|. ...++ ....+|+++++
T Consensus 290 lek~a~~-------~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGL--Ia~g~~~sP~~~aDvvt~T 358 (586)
T PLN02271 290 LEEKALD-------FRPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGL--VAAKECVNPFDYCDIVTST 358 (586)
T ss_pred HHHHhhh-------cCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccc--cccCcCCCCCcCCcEEEeC
Confidence 9985442 78999999998887 78999999 99999999999999999872 21111 11248999999
Q ss_pred cCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcc-cccccccccccccCCCCCccchhhHHHHHHHHHH
Q 037063 344 FYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEI-IELETLDESSQSKFPESSISGVSSKLVECKGLDH 422 (588)
Q Consensus 344 ~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~-~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~ 422 (588)
+||+|.. |.| |+++++++....+++...++ +.....+ +. ..++..-.+.+ +.|+.+.. + +++..++++
T Consensus 359 THKtLrG-PrG-G~I~~r~~~~~~~~g~~gs~-s~~~~~~---d~~~kI~~aVfPgl-qgGphn~~-I---AalAvalke 427 (586)
T PLN02271 359 THKSLRG-PRG-GIIFYRKGPKLRKQGMLLSH-GDDNSHY---DFEEKINFAVFPSL-QGGPHNNH-I---AALAIALKQ 427 (586)
T ss_pred CcccCCC-CCc-eEEEecccccccccCCcccc-ccccccH---HHHHHhhcccCCcc-ccChhHHH-H---HHHHHHHHH
Confidence 9996642 999 88888877543333332221 1100000 00 00000001234 56665544 4 788899998
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCc
Q 037063 423 ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNI 502 (588)
Q Consensus 423 l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI 502 (588)
+.........+++...++.|.+.|.+. +++|++.. .....+.+.+... .++...+++.|++.||
T Consensus 428 a~~~efk~Ya~QVv~NAkaLA~~L~~~----------G~~vv~gg---TdnHlvLvDl~~~---g~~G~~ae~~Le~~~I 491 (586)
T PLN02271 428 VATPEYKAYMQQVKKNAQALASALLRR----------KCRLVTGG---TDNHLLLWDLTTL---GLTGKNYEKVCEMCHI 491 (586)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHC----------CCeEeeCC---CCcceeeecCccc---CCCHHHHHHHHHHcCe
Confidence 766555778888888889999998873 45555432 2346666666432 2678899999999999
Q ss_pred EeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC----CHHHHHHHHHHHHHhhh
Q 037063 503 SLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT----NFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 503 ~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~----t~eDv~~li~~l~~~l~ 567 (588)
.+---. + |+. . ...-.+.|||.....| .++|++.+.++|.+.++
T Consensus 492 ~~Nkn~-i-P~d--~-----------------~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 492 TLNKTA-I-FGD--N-----------------GTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred Eecccc-C-CCC--C-----------------CCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 863210 0 110 0 0011126888765444 46899999999998877
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=191.64 Aligned_cols=304 Identities=16% Similarity=0.079 Sum_probs=199.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+++++++++++|.+ + .++++++++|+.+++.++ +++||+|++. ..|++ ....+...++..|+++..++.
T Consensus 39 ~p~~~~le~~la~l~g~~--~--a~~~~sG~~Ai~~~l~~l-~~~gd~Vl~~~~~y~~-~~~~~~~~~~~~g~~~~~v~~ 112 (369)
T cd00614 39 NPTVDALEKKLAALEGGE--A--ALAFSSGMAAISTVLLAL-LKAGDHVVASDDLYGG-TYRLFERLLPKLGIEVTFVDP 112 (369)
T ss_pred ChhHHHHHHHHHHHHCCC--C--EEEEcCHHHHHHHHHHHH-cCCCCEEEECCCCcch-HHHHHHHHHhhcCeEEEEeCC
Confidence 566789999999999973 2 677788899999999998 8999997654 45554 444445566788999998876
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ ++++++++++ +++++|++.+++|++|.+.|+++| ++|+++|+++++|++...+....+++ +
T Consensus 113 ~------d~~~l~~~i~--------~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~~~~---~ 175 (369)
T cd00614 113 D------DPEALEAAIK--------PETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPLE---L 175 (369)
T ss_pred C------CHHHHHHhcC--------CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCChhh---h
Confidence 4 5788988887 689999999999999999999999 99999999999999987774223333 3
Q ss_pred CCcEEEeccCccCCCCCC--ceEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhh
Q 037063 336 KPDFLICSFYKIFGENPS--GFGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSS 412 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~--G~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~ 412 (588)
++|+++.|++|.+|. +. ..|+++.++ +++++++...... | ++.+ ..
T Consensus 176 g~Divv~S~tK~l~g-~~~~~gG~v~~~~~~l~~~l~~~~~~~-g-------------------------~~~~--p~-- 224 (369)
T cd00614 176 GADIVVHSATKYIGG-HSDVIAGVVVGSGEALIQRLRFLRLAL-G-------------------------TILS--PF-- 224 (369)
T ss_pred CCcEEEeccceeccC-CCCceEEEEEeCcHHHHHHHHHHHHhh-C-------------------------CCCC--HH--
Confidence 489999999998872 22 278888877 6666554322100 0 0111 11
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCC------------CCCcccEEEEE
Q 037063 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKV------------MFDRGPSLAFN 479 (588)
Q Consensus 413 ~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~------------~~~rg~iv~f~ 479 (588)
....++..++. ++...++..+.+.++.+.|.+. |.| +++-|.- ....|++++|.
T Consensus 225 --~a~~~l~~l~t--l~~r~~~~~~na~~la~~L~~~---------~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~ 291 (369)
T cd00614 225 --DAWLLLRGLKT--LPLRMERHSENALKVAEFLEKH---------PKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFE 291 (369)
T ss_pred --HHHHHHcCCCC--HHHHHHHHHHHHHHHHHHHHcC---------CCccEEECCCCCCCchHHHHHHhcCCCceEEEEE
Confidence 11122333322 3445566677777888888764 222 3333310 11347899999
Q ss_pred eecCCCCCcCHHHHHHHHHhCCcEe---cccc----ccCcccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCCCC
Q 037063 480 VFDWNGTRIDPALVQKLADRHNISL---SCGF----LQNIFFSGEYEQERVRVLETRSGTNETRSGV--SVVTAALGCLT 550 (588)
Q Consensus 480 ~~~~~g~~i~~~~v~~~l~~~gI~v---~~G~----~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~~ 550 (588)
+.+ +.+.+.+++++..+.- +-|. .|++....... ..... .. ..|+ +.||+|+|.
T Consensus 292 l~~------~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~-~~~~~-~~-------~~g~~~~liR~svGl-- 354 (369)
T cd00614 292 LKG------GLEAAKKFLNALKLFSLAVSLGGVESLVEHPASMTHSQ-LPPEE-RA-------AAGITPGLVRLSVGI-- 354 (369)
T ss_pred eCC------CHHHHHHHHHcCCcceEcccCCCCceeeeCCccccccc-CCHHH-HH-------hcCCCCCeEEEEeCc--
Confidence 863 2556677777766542 2221 11111111000 00000 01 1343 389999998
Q ss_pred CHHHHHHHHHHHHHhhh
Q 037063 551 NFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 551 t~eDv~~li~~l~~~l~ 567 (588)
||++.|++-|.+.|+
T Consensus 355 --E~~~dl~~dl~~al~ 369 (369)
T cd00614 355 --EDVEDLIADLEQALK 369 (369)
T ss_pred --CCHHHHHHHHHHhhC
Confidence 899999999887653
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-19 Score=188.93 Aligned_cols=165 Identities=10% Similarity=0.057 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
...+++++++++++|+++ .+.+++++.|+.+++.++ +++||+|++. ..|.+ ....+...++..|++++.++.
T Consensus 65 p~~~~Le~~lA~l~G~~~----~~~~~sG~~Ai~~~l~~~-l~~Gd~Vl~~~~~y~~-~~~~~~~~~~~~G~~v~~vd~- 137 (398)
T PRK07504 65 PTVDMFEKRMCALEGAED----ARATASGMAAVTAAILCQ-VKAGDHVVAARALFGS-CRYVVETLLPRYGIESTLVDG- 137 (398)
T ss_pred chHHHHHHHHHHHhCCCe----eeEecCHHHHHHHHHHHH-hCCCCEEEEcCCchhH-HHHHHHHHHhhcCeEEEEECC-
Confidence 345789999999999963 334678888988777776 8999997654 44544 222234556778999998852
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFK 336 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~ 336 (588)
+|+++++++|+ ++|++|++++++|++|.+.|+++| ++|+++|+++++|+++..+....++. .+
T Consensus 138 -----~d~e~l~~ai~--------~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~~---~g 201 (398)
T PRK07504 138 -----LDLDNWEKAVR--------PNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKPLE---LG 201 (398)
T ss_pred -----CCHHHHHHhcC--------cCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCCchh---hC
Confidence 58899999987 789999999999999999999999 99999999999999987663222332 24
Q ss_pred CcEEEeccCccCCCCCCceE-EEEEeCcchh
Q 037063 337 PDFLICSFYKIFGENPSGFG-CLFVKKSSAS 366 (588)
Q Consensus 337 ~D~vv~S~~K~~G~~P~G~G-~L~v~~~~~~ 366 (588)
+|+++.|++|++|.+..++| +++.+++.+.
T Consensus 202 aDivv~S~sK~l~g~g~~~GG~vv~~~~~i~ 232 (398)
T PRK07504 202 AHIVVYSATKHIDGQGRCLGGVVLSDKAWIE 232 (398)
T ss_pred CCEEEeeccccccCCccceEEEEEeCcHHHH
Confidence 89999999998873222354 5555565543
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=196.51 Aligned_cols=329 Identities=13% Similarity=0.092 Sum_probs=204.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCC-----ceEEEecCHHHHHHHHHHhCC--------CCCCCe--EEEcCCCchhHHHHHHH
Q 037063 178 SELESKIRKRIMDFMNISEDD-----YTLVFTANQSSAFKLLAESYP--------FYSNPR--LLTVYDHENEAAALMIE 242 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e-----~~vvft~g~T~al~lv~~s~~--------~~~gd~--ll~~~e~~s~~~~~~~~ 242 (588)
.+++.++-+++++++|.+++. -..+||+|+|+|+-..+.... +....+ |+++..-|. ++ .+
T Consensus 121 ~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~-Sv---~K 196 (490)
T PLN02880 121 TELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHS-AL---QK 196 (490)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchH-HH---HH
Confidence 688999999999999997531 247899999998644332211 111123 333433333 23 45
Q ss_pred HHHhcCC---EEEEEeccC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEE
Q 037063 243 SSKKRGA---RVSSAEFAW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLL 317 (588)
Q Consensus 243 ~a~~~G~---~v~~v~~~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvv 317 (588)
.|.-.|. .++.||.+. .++++|+++|+++|.+. +.....+-+|+.+..++.+|.+.|+++| ++|+++|++++|
T Consensus 197 aa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~--~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHV 274 (490)
T PLN02880 197 ACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTD--LSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHV 274 (490)
T ss_pred HHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHH--HHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEE
Confidence 6677787 478899873 36789999999999732 1223457889999999999999999999 999999999999
Q ss_pred eCCCcCCCC-CCCC--CCC-CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccc
Q 037063 318 DATALGSKD-MDTL--GLS-LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELET 393 (588)
Q Consensus 318 Daa~~~~~d-~~~l--~l~-~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~ 393 (588)
|||..++.- ...+ .+. ..++|++++++|||++. |.|+|++++|+... ......... ........ .
T Consensus 275 DaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~-P~~~g~llvr~~~~-l~~~~~~~~-~Yl~~~~~---~----- 343 (490)
T PLN02880 275 DAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLT-NFDCSLLWVKDRNA-LIQSLSTNP-EFLKNKAS---Q----- 343 (490)
T ss_pred ehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCC-CccEEEEEEeCHHH-HHHHHccCH-HHhcCccc---c-----
Confidence 999665410 1110 122 13599999999998886 99999999996321 111111110 00000000 0
Q ss_pred ccccccccCCCCCccchhhHH-HHHHHHHH---HHHhCHHHHHHHHH---HHHHHHHHHHHcccCCCCCCCCCeEEEeCC
Q 037063 394 LDESSQSKFPESSISGVSSKL-VECKGLDH---ADALGLILISNRAR---YLINWLANALMNLHHPHSETGIPLVRIYGP 466 (588)
Q Consensus 394 ~~~~~f~e~GT~~~~~~~~~~-al~~aL~~---l~~~G~~~i~~r~~---~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p 466 (588)
..++.++..+..-. --..+|+. ++.+|.+.+.++++ +|++++.+.|.+ .+.++++.|
T Consensus 344 -------~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~---------~~~~el~~~ 407 (490)
T PLN02880 344 -------ANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQ---------DSRFEVVTP 407 (490)
T ss_pred -------ccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc---------CCCEEEecC
Confidence 00111111000000 00023333 44567777777777 999999999987 367999886
Q ss_pred CCCCCcccEEEEEeecCCCCC-----cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccE
Q 037063 467 KVMFDRGPSLAFNVFDWNGTR-----IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSV 541 (588)
Q Consensus 467 ~~~~~rg~iv~f~~~~~~g~~-----i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~ 541 (588)
. ..++|+|.+....... +....++++.+...+.+.... ..|..+
T Consensus 408 ~----~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~---------------------------~~g~~~ 456 (490)
T PLN02880 408 R----IFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTV---------------------------LSGKYV 456 (490)
T ss_pred C----ceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEE---------------------------ECCEEE
Confidence 3 4689999987421100 111222333333455554321 144459
Q ss_pred EEEecCCCCC-HHHHHHHHHHHHHhhhhhh
Q 037063 542 VTAALGCLTN-FEDTYRLWAFVSRFLDADF 570 (588)
Q Consensus 542 vRvSlg~~~t-~eDv~~li~~l~~~l~~~~ 570 (588)
+|+|++.++| .+||+++++.|.+..++.+
T Consensus 457 lR~~~~n~~tt~~di~~~~~~i~~~~~~~~ 486 (490)
T PLN02880 457 LRFAVGAPLTEERHVTAAWKVLQDEASKLL 486 (490)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999975555 5999999999998766543
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=191.22 Aligned_cols=280 Identities=10% Similarity=0.078 Sum_probs=191.5
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNL 261 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~ 261 (588)
.++|+.|++++++++++ |++|+|+++++.+++.++ .++||+|++....+. .....++..|++++.++.+ ++
T Consensus 67 ~~Lr~aia~~~~~~~~~--I~vt~Gs~e~i~~~~~~l-~~~gd~vlv~~P~y~----~~~~~~~~~g~~v~~v~~~--~~ 137 (366)
T PRK01533 67 TTLRQTIANKLHVKMEQ--VLCGSGLDEVIQIISRAV-LKAGDNIVTAGATFP----QYRHHAIIEGCEVKEVALN--NG 137 (366)
T ss_pred HHHHHHHHHHhCCCcce--EEECCCHHHHHHHHHHHh-cCCCCEEEEcCCcHH----HHHHHHHHcCCEEEEeecC--CC
Confidence 47999999999998765 999999999999999999 899999776654432 2245567789999999985 45
Q ss_pred ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHH---HcCcEEEEeCCCc--CCC-C-CCCCC-C
Q 037063 262 RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAA---EKGWHVLLDATAL--GSK-D-MDTLG-L 332 (588)
Q Consensus 262 ~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~---~~g~~vvvDaa~~--~~~-d-~~~l~-l 332 (588)
.+|+++|+++++ ++++++++++++||||..+|.+++ ++++ +++ ++|+|.+.. ... + ...+. +
T Consensus 138 ~~d~~~l~~~~~--------~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~ 208 (366)
T PRK01533 138 VYDLDEISSVVD--------NDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLL 208 (366)
T ss_pred CcCHHHHHHHhC--------cCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHh
Confidence 699999999887 678999999999999999999987 5554 445 677898732 110 0 01111 1
Q ss_pred CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhh
Q 037063 333 SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSS 412 (588)
Q Consensus 333 ~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~ 412 (588)
...+--+++.||.|.||++...+|+++..+++++.+...... +. .+....
T Consensus 209 ~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~~~~~--~~--------------------------~~~~~q-- 258 (366)
T PRK01533 209 EKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRLP--FN--------------------------VSSLAQ-- 258 (366)
T ss_pred ccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHHhcCC--CC--------------------------cCHHHH--
Confidence 122245788899999986456699999988887766533211 00 111111
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHH
Q 037063 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPAL 492 (588)
Q Consensus 413 ~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~ 492 (588)
.++..+|+.- .. ++.+.+..++.++++.+.++.+ +++++. ..++.+-+.+.+ ...
T Consensus 259 -~aa~~~l~~~-~~-~~~~~~~~~~~r~~~~~~l~~~----------g~~~~~-----~~~nf~~~~~~~-------~~~ 313 (366)
T PRK01533 259 -KAATIAFGDD-EF-IEEIVRVNTEGLRQYESFCKEN----------EIPFYQ-----SQTNFIFLPVEN-------GGE 313 (366)
T ss_pred -HHHHHHhCCH-HH-HHHHHHHHHHHHHHHHHHHHhC----------CCccCC-----CcCcEEEEeCCC-------HHH
Confidence 2233444321 11 2444555555666666666654 234433 235555555532 456
Q ss_pred HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 493 VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 493 v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+.+.|.++||.|+. + .+ +||||+| +.+|.++|+++|+++++.
T Consensus 314 ~~~~l~~~GI~Vr~---~--------------------------~~--~iRis~~---~~~~~~~l~~al~~~~~~ 355 (366)
T PRK01533 314 IYEACAHAGFIIRP---F--------------------------PN--GVRITVG---TREQNEGVISVLQQHFEN 355 (366)
T ss_pred HHHHHHHCCcEEcc---C--------------------------CC--ceEEeCC---CHHHHHHHHHHHHHHHHh
Confidence 77888889999985 2 11 7999998 789999999999987543
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-19 Score=189.83 Aligned_cols=305 Identities=15% Similarity=0.102 Sum_probs=192.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....++++++|+++.|++ + .++++|+++|+.+++.++ +++||+|++. ..|.. ....+..+++..|.+++.++.
T Consensus 59 ~p~~~~Le~~lA~l~g~~---~-~v~~~sG~~Ai~~~l~al-l~pGD~Vvv~~p~Y~~-t~~~~~~~~~~~g~~v~~v~~ 132 (405)
T PRK08776 59 NPTRDLLGEALAELEGGA---G-GVITATGMGAINLVLNAL-LQPGDTLVVPHDAYGG-SWRLFNALAKKGHFALITADL 132 (405)
T ss_pred ChHHHHHHHHHHHHhCCC---c-eEEEcCHHHHHHHHHHHH-hCCCCEEEEccCCchH-HHHHHHHHHHhcCcEEEEECC
Confidence 445678999999999973 2 355666689999999999 9999997654 44443 333335556677888888764
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
.|.++|+++++ ++|++|++++++|+||.+.++++| ++|+++|++|++|+++..|....++. +
T Consensus 133 ------~d~~~l~~~i~--------~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl~---~ 195 (405)
T PRK08776 133 ------TDPRSLADALA--------QSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPLE---F 195 (405)
T ss_pred ------CCHHHHHHhcC--------cCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCccc---c
Confidence 36788988887 689999999999999999999999 99999999999999987763223332 3
Q ss_pred CCcEEEeccCccCCCCCCc--eEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhh
Q 037063 336 KPDFLICSFYKIFGENPSG--FGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSS 412 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G--~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~ 412 (588)
++|+++.|++|++|. +.+ .|++++++ ++.+++...... ...+.+....
T Consensus 196 gaDivv~S~tK~l~g-~~~~~~G~vv~~~~~l~~~l~~~~~~--------------------------~g~~~s~~~a-- 246 (405)
T PRK08776 196 GADLVLHSTTKYING-HSDVVGGAVVARDAELHQQLVWWANA--------------------------LGLTGSPFDA-- 246 (405)
T ss_pred cCCEEEecCceeecC-CCCceEEEEEeCCHHHHHHHHHHHHh--------------------------cCCCCCHHHH--
Confidence 489999999998863 444 57776654 343433211100 0001111111
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCC------------CCcccEEEEE
Q 037063 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVM------------FDRGPSLAFN 479 (588)
Q Consensus 413 ~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~------------~~rg~iv~f~ 479 (588)
..+..+++.+ +...++..+.+..+.+.|++. |.| +|+-|... ..-|++++|.
T Consensus 247 -~l~~~gl~tl-----~~r~~~~~~na~~la~~L~~~---------p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~ 311 (405)
T PRK08776 247 -FLTLRGLRTL-----DARLRVHQENADAIAALLDGH---------AAVNQVYYPGLASHPGHALAARQQKGFGAMLSFE 311 (405)
T ss_pred -HHHHhhhCcH-----HHHHHHHHHHHHHHHHHHHcC---------CCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEE
Confidence 2222444433 445566666667777777763 333 45555311 1246899999
Q ss_pred eecCCCCCcCHHHHHHHHHhCCc---Eecccc----ccCcccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCCCC
Q 037063 480 VFDWNGTRIDPALVQKLADRHNI---SLSCGF----LQNIFFSGEYEQERVRVLETRSGTNETRSGV--SVVTAALGCLT 550 (588)
Q Consensus 480 ~~~~~g~~i~~~~v~~~l~~~gI---~v~~G~----~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~~ 550 (588)
+.+ +.+.+.++++...+ ..+-|. .|++.....+. .... ... ..|+ +.||+|+|.
T Consensus 312 ~~~------~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~-~~~~-~~~-------~~gi~~~liR~svGl-- 374 (405)
T PRK08776 312 LEG------GEAAVRAFVDGLRYFTLAESLGGVESLIAHPASMTHAA-MTAE-ARA-------AAGISDGLLRLSVGI-- 374 (405)
T ss_pred EcC------CHHHHHHHHHhCCcceEccCCCCCceEEECCccccccc-CCHH-HHH-------hcCCCCCeEEEEeCc--
Confidence 864 14455666666554 223332 22221111110 0000 011 1343 389999997
Q ss_pred CHHHHHHHHHHHHHhhhh
Q 037063 551 NFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 551 t~eDv~~li~~l~~~l~~ 568 (588)
||++.|++-|.+.|++
T Consensus 375 --E~~~dli~dl~~al~~ 390 (405)
T PRK08776 375 --ESAEDLLIDLRAGLAR 390 (405)
T ss_pred --CCHHHHHHHHHHHHHH
Confidence 7788888777777765
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-18 Score=187.60 Aligned_cols=305 Identities=12% Similarity=0.090 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHhCC--CCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 179 ELESKIRKRIMDFMNI--SEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga--~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++.+.+.+.+.+..|. +++ .+|++|+|+++|+.+++.++ +++||+|++....+... ...++..|++++.+++
T Consensus 95 ~Lr~aia~~~~~~~g~~~~~~-~~I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~----~~~~~~~g~~~~~v~~ 168 (413)
T PLN00175 95 ELNSAIAERFKKDTGLVVDPE-KEVTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSY----EATLSMAGAKIKTVTL 168 (413)
T ss_pred HHHHHHHHHHHHHhCCCCCCC-CCEEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhH----HHHHHHcCCEEEEEEC
Confidence 3444444444444454 343 24999999999999999998 89999977655444322 3455678999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcCC-C--CCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALGS-K--DMDT 329 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~~-~--d~~~ 329 (588)
+.+++.++.++|++++. +++++|++++++||||..++.++ | ++|+++|++||+|.+...- . +..+
T Consensus 169 ~~~~~~~~~~~l~~~~~--------~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s 240 (413)
T PLN00175 169 RPPDFAVPEDELKAAFT--------SKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHIS 240 (413)
T ss_pred CcccCCCCHHHHHHhcC--------cCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccC
Confidence 74456789999999987 67999999999999999998665 5 7889999999999983221 0 0111
Q ss_pred -CCCCC-CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCc
Q 037063 330 -LGLSL-FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407 (588)
Q Consensus 330 -l~l~~-~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~ 407 (588)
..+.. ....+++.|+.|.||.+..++|++++++++++.+...... . ..+++.+
T Consensus 241 ~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~~l~~~~~~---~----------------------~~~~s~~ 295 (413)
T PLN00175 241 MASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSF---L----------------------TFATATP 295 (413)
T ss_pred hhhCCCCcCcEEEEecchhhccCcchheeeeEeCHHHHHHHHHHHhh---c----------------------cCCCCHH
Confidence 11111 2345888999999885456799999998887655432210 0 0111222
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE-EEeecCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA-FNVFDWNGT 486 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~-f~~~~~~g~ 486 (588)
.+ .++..+|+.-+.. ++++.++.+..++.+.+.|.++ ++.++.| .|+.+. +.+.. .+
T Consensus 296 ~Q----~a~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~p-----~g~~f~~~~~~~-~~- 353 (413)
T PLN00175 296 MQ----WAAVAALRAPESY-YEELKRDYSAKKDILVEGLKEV----------GFKVYPS-----SGTYFVMVDHTP-FG- 353 (413)
T ss_pred HH----HHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHHC----------CCeecCC-----CeeEEEEEeccc-cC-
Confidence 22 2333444321111 4666777777788888888874 2445433 344433 33321 11
Q ss_pred CcCHHH-HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 487 RIDPAL-VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 487 ~i~~~~-v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
..+... +..++++.||.+.+|..+.. . ...+...||++++. +.|+++..++.|+++
T Consensus 354 ~~~~~~~~~~ll~~~gV~v~pg~~F~~---------------~------~~~~~~~iRls~~~--~~e~l~~~~~rL~~~ 410 (413)
T PLN00175 354 FENDIAFCEYLIEEVGVAAIPPSVFYL---------------N------PEDGKNLVRFAFCK--DEETLRAAVERMKTK 410 (413)
T ss_pred CCCHHHHHHHHHHhCCEEEeCchHhCC---------------C------CCCCCCEEEEEEcC--CHHHHHHHHHHHHHH
Confidence 112334 45566788999988843210 0 00122389999984 789999999999887
Q ss_pred hh
Q 037063 566 LD 567 (588)
Q Consensus 566 l~ 567 (588)
++
T Consensus 411 ~~ 412 (413)
T PLN00175 411 LK 412 (413)
T ss_pred Hh
Confidence 65
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=193.49 Aligned_cols=304 Identities=16% Similarity=0.105 Sum_probs=197.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
...++++++++++++|++ +.++| ++++.|+.+++.++ +++||+|+ ....|+++ +..+...++..|+++++++.
T Consensus 62 ~p~~~~le~~lA~l~g~~---~av~~-~sG~~Ai~~al~al-~~~Gd~Vl~~~~~y~~t-~~~~~~~~~~~G~~v~~vd~ 135 (389)
T PRK05968 62 NPTVRAFEEMLAKLEGAE---DARGF-ASGMAAISSTVLSF-VEPGDRIVAVRHVYPDA-FRLFETILKRMGVEVDYVDG 135 (389)
T ss_pred ChhHHHHHHHHHHHhCCC---cEEEE-CCHHHHHHHHHHHH-hCCCCEEEEeCCCchHH-HHHHHHHHHHcCceEEEeCC
Confidence 455789999999999995 33555 66678999888888 89999966 45566553 33335667788999999875
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ +++++++++. +|++|++.+++|+++.+.|+++| ++|+++|++|++|+++..+....++. +
T Consensus 136 ~------d~~~l~~~i~---------~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p~~---~ 197 (389)
T PRK05968 136 R------DEEAVAKALP---------GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPIT---L 197 (389)
T ss_pred C------CHHHHHHhcc---------cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCchh---c
Confidence 3 6788887763 58999999999999999999999 99999999999999987763222332 3
Q ss_pred CCcEEEeccCccCCCCCCc--eEEEEEeCcchhcccCCC---CCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 336 KPDFLICSFYKIFGENPSG--FGCLFVKKSSASVLSGST---SSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G--~G~L~v~~~~~~~l~~~~---~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
++|+++.|++|+++. |.+ .|+++.+++++++++... .| +. ..++.+
T Consensus 198 g~Divv~S~tK~l~g-~~~~~gG~i~~~~~~~~~l~~~~~~~~g--~~-------------------------~~~~~A- 248 (389)
T PRK05968 198 GVDLVIHSASKYLGG-HSDTVAGVVAGSKEHIARINAEAYPYLG--AK-------------------------LSPFEA- 248 (389)
T ss_pred CCcEEEeeccccccC-CCCeEEEEEEECHHHHHHHHHHHHHhCC--CC-------------------------CChHHH-
Confidence 489999999998773 544 688888887776654321 11 00 001111
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCC-------CCcccEEEEEeec
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVM-------FDRGPSLAFNVFD 482 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~-------~~rg~iv~f~~~~ 482 (588)
+ .++..++. +....++..+.+.++.+.|+++ |.| .++.|.-. ...+++++|.+.+
T Consensus 249 ---~---~~l~~L~t--l~~r~~~~~~~a~~la~~L~~~---------p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~ 311 (389)
T PRK05968 249 ---W---LLLRGLRT--LPLRMKAHEASALEIARRLKAH---------PVVERVCHPALANHPPAGLSGTSGLFSFIFRE 311 (389)
T ss_pred ---H---HHHcccCc--HHHHHHHHHHHHHHHHHHHHhC---------CCccEEECCCCCCChHHhCCCCceEEEEEECC
Confidence 1 22333333 2444455555688888888873 555 34434211 1246799999863
Q ss_pred CCCCCcCHHHHHHHHHhCCcEeccccccCc---ccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCCCCCHHHHHH
Q 037063 483 WNGTRIDPALVQKLADRHNISLSCGFLQNI---FFSGEYEQERVRVLETRSGTNETRSGV--SVVTAALGCLTNFEDTYR 557 (588)
Q Consensus 483 ~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~---~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~~t~eDv~~ 557 (588)
| .+...+...|+..+|.++.|..|+. ...... .......... .|+ +.||+|+|+. |++.
T Consensus 312 --~--~~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~~-~~~~~~~~~~-------~gi~~~liR~SvGlE----~~~d 375 (389)
T PRK05968 312 --G--IDVRAFADALKLFRLGVSWGGHESLVVPAEVVLQ-QKAQPNSAAR-------FGVSPRSVRLHVGLE----GTEA 375 (389)
T ss_pred --H--HHHHHHHHhCCccEEecCCCCCCceeeeCccccc-ccCCHHHHHh-------cCCCCCeEEEEeccC----CHHH
Confidence 2 3455667777778888888887762 111000 0000111111 343 3999999985 4555
Q ss_pred HHHHHHHhhh
Q 037063 558 LWAFVSRFLD 567 (588)
Q Consensus 558 li~~l~~~l~ 567 (588)
|++-|++.|+
T Consensus 376 l~~dl~~al~ 385 (389)
T PRK05968 376 LWADLEQALA 385 (389)
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=192.41 Aligned_cols=294 Identities=13% Similarity=0.080 Sum_probs=190.0
Q ss_pred HHHHHHHHHhC------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 183 KIRKRIMDFMN------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 183 ~~r~~ia~~lg------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++|+.|+++++ ++++ .+|++|+|+++|+.+++.++ .++||+|++....+. +....++..|++++.+++
T Consensus 73 ~lr~aia~~~~~~~g~~~~~~-~~I~it~G~~~al~~~~~~~-~~~Gd~Vlv~~P~y~----~~~~~~~~~G~~~~~v~~ 146 (399)
T PRK07681 73 EFHEAVTEYYNNTHNVILNAD-KEVLLLMGSQDGLVHLPMVY-ANPGDIILVPDPGYT----AYETGIQMAGATSYYMPL 146 (399)
T ss_pred HHHHHHHHHHHHHhCCCCCCC-CeEEECCCcHHHHHHHHHHh-CCCCCEEEECCCCcc----chHHHHHhcCCEEEEEec
Confidence 56777777664 4441 35999999999999999999 899999776544332 224456778999999998
Q ss_pred cCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC----CCCC
Q 037063 257 AWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG----SKDM 327 (588)
Q Consensus 257 ~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~----~~d~ 327 (588)
+.. ...++.+++++.+. +++++|++++++||||..++.++ | ++|+++|++||+|.+..- +...
T Consensus 147 ~~~~~~~~d~~~l~~~~~--------~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~ 218 (399)
T PRK07681 147 KKENDFLPDLELIPEEIA--------DKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKP 218 (399)
T ss_pred CCCCCCcCCHHHHHHhcc--------ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCC
Confidence 733 24578999988886 67999999999999999999555 5 778999999999998431 1101
Q ss_pred CC-CCCC-CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 328 DT-LGLS-LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 328 ~~-l~l~-~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
.. +.+. .....+++.|++|.||.+..++|+++.++++++.+....... ..++.
T Consensus 219 ~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~~l~~~~~~~~~~~-------------------------~~~~s 273 (399)
T PRK07681 219 ISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVRALTQFKSNT-------------------------DYGVF 273 (399)
T ss_pred CChhhCCCCcccEEEEeecccccCCccceeEEEecCHHHHHHHHHHHhhc-------------------------ccCCC
Confidence 11 1111 112457888999999854455999999888877664322100 00111
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCC
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNG 485 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g 485 (588)
.+.+ .++..+|+.-... +++..++.+...+++.+.|.++ ++++..| ..|..+-+.+.+ +
T Consensus 274 ~~~q----~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~p----~~g~f~~~~l~~--~ 332 (399)
T PRK07681 274 LPIQ----KAACAALRNGAAF-CEKNRGIYQERRDTLVDGFRTF----------GWNVDKP----AGSMFVWAEIPK--G 332 (399)
T ss_pred HHHH----HHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHC----------CCcccCC----CeeeEEEEECCC--C
Confidence 1111 2222333221111 3445556666777788888763 2444333 123333334432 1
Q ss_pred CCcCHHHH-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 486 TRIDPALV-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 486 ~~i~~~~v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
++...+ ..+++++||.+++|..+. . .+.++||+|++ .+.++++++++.|++
T Consensus 333 --~~~~~~~~~l~~~~gv~v~pg~~f~----------------~--------~~~~~iRis~~--~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 333 --WTSLSFAYALMDRANVVVTPGHAFG----------------P--------HGEGFVRIALV--QDEEVLQQAVENIRN 384 (399)
T ss_pred --CCHHHHHHHHHHhCCEEEeCChhhC----------------c--------CCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 334444 555566999999885431 0 11238999998 478999999999876
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-19 Score=188.13 Aligned_cols=299 Identities=14% Similarity=0.131 Sum_probs=189.1
Q ss_pred HHHHHHHHHHh-----CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 182 SKIRKRIMDFM-----NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 182 ~~~r~~ia~~l-----ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++|+.+++++ +++++ +|++|+|+++|+.+++.++ +++||+|++...++.+.. ..++..|++++.++.
T Consensus 69 ~~lr~~ia~~~~~~~~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~v~~ 141 (397)
T PRK07568 69 PELREAFAKYYKKWGIDVEPD--EILITNGGSEAILFAMMAI-CDPGDEILVPEPFYANYN----GFATSAGVKIVPVTT 141 (397)
T ss_pred HHHHHHHHHHHHHhCCCCCcc--eEEEcCChHHHHHHHHHHh-cCCCCEEEEecCCCccHH----HHHHHcCCEEEEeec
Confidence 47888888887 45555 4999999999999999998 899999776555444332 345678999999998
Q ss_pred cCCCCc--cCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCH---HHH-HHHHHcCcEEEEeCCCcC----CCC
Q 037063 257 AWPNLR--IHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSY---MWM-SVAAEKGWHVLLDATALG----SKD 326 (588)
Q Consensus 257 ~~~~~~--i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl---~~I-~~a~~~g~~vvvDaa~~~----~~d 326 (588)
+.+++. .+.++|+++++ +++++|++++++|+||..++. ++| ++|+++|+++++|.+... +..
T Consensus 142 ~~~~g~~~~~~~~l~~~~~--------~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 213 (397)
T PRK07568 142 KIEEGFHLPSKEEIEKLIT--------PKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLK 213 (397)
T ss_pred CcccCCCCCCHHHHHHhcC--------ccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCC
Confidence 633332 25688888887 679999999999999999985 556 889999999999998321 110
Q ss_pred CCC-CCCCC-CCCcEEEeccCccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCC
Q 037063 327 MDT-LGLSL-FKPDFLICSFYKIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP 403 (588)
Q Consensus 327 ~~~-l~l~~-~~~D~vv~S~~K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G 403 (588)
... +.+.. ...-+++.|++|.||.+..++|+++.. +++++.+...... ..+
T Consensus 214 ~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~--------------------------~~~ 267 (397)
T PRK07568 214 YTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQA--------------------------RLS 267 (397)
T ss_pred ccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhhc--------------------------cCC
Confidence 111 12211 112377889999888545679999885 4555443211100 001
Q ss_pred CCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE-EEEeec
Q 037063 404 ESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL-AFNVFD 482 (588)
Q Consensus 404 T~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv-~f~~~~ 482 (588)
++.+.+ .++..+|+..+.. ++++.++.+..++.+.+.|.++ +++.+..| .|+.. -+.++.
T Consensus 268 ~s~~~q----~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~p-----~g~~~~~~~l~~ 328 (397)
T PRK07568 268 PPTLEQ----IGAAALLDTPESY-FDEVREEYKKRRDILYEELNKI---------PGVVCEKP-----KGAFYIIAKLPV 328 (397)
T ss_pred CCcHHH----HHHHHHhhCCHHH-HHHHHHHHHHHHHHHHHHHhcC---------CCceecCC-----CcceEEEEecCC
Confidence 111111 2333444321111 4556666677777888888763 34554433 34443 344432
Q ss_pred CCCCCcCHHHHHH-HHHh-----CCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHH
Q 037063 483 WNGTRIDPALVQK-LADR-----HNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTY 556 (588)
Q Consensus 483 ~~g~~i~~~~v~~-~l~~-----~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~ 556 (588)
.+...+.+ ++++ .||.+.+|.... .. ...+..+||+|++. +.++++
T Consensus 329 -----~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~----------------~~-----~~~~~~~iRls~~~--~~~~~~ 380 (397)
T PRK07568 329 -----DDAEDFAKWLLTDFNYNGETVMVAPASGFY----------------AT-----PGLGKNEIRIAYVL--NEEDLK 380 (397)
T ss_pred -----CCHHHHHHHHHhhcccccceEEEeCchHhc----------------CC-----CCCCCCeEEEEEeC--CHHHHH
Confidence 13445544 4443 689998874321 00 00122389999873 579999
Q ss_pred HHHHHHHHhhhh
Q 037063 557 RLWAFVSRFLDA 568 (588)
Q Consensus 557 ~li~~l~~~l~~ 568 (588)
+.++.|.+++++
T Consensus 381 ~~~~~l~~~l~~ 392 (397)
T PRK07568 381 RAMEILKEALEK 392 (397)
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-19 Score=187.60 Aligned_cols=300 Identities=16% Similarity=0.148 Sum_probs=194.5
Q ss_pred HHHHHHHHHHh----CC--CCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 182 SKIRKRIMDFM----NI--SEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 182 ~~~r~~ia~~l----ga--~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.++|+.+++++ |+ +++ .+|++|+|+++|+.+++.++ +++||+|+++...+.+. ...++..|++++.++
T Consensus 68 ~~lr~~ia~~l~~~~g~~~~~~-~~I~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~~----~~~~~~~g~~~~~~~ 141 (387)
T PRK07683 68 LELRKAACNFVKDKYDLHYSPE-SEIIVTIGASEAIDIAFRTI-LEPGTEVILPAPIYPGY----EPIIRLCGAKPVFID 141 (387)
T ss_pred HHHHHHHHHHHHHHhCCCCCCC-CcEEEeCChHHHHHHHHHHh-CCCCCEEEEcCCCccch----HHHHHHcCCEEEEee
Confidence 36677777766 43 444 14999999999999999998 89999987665544322 334466799999999
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCCCcCC---CCCC
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYM---WM-SVAAEKGWHVLLDATALGS---KDMD 328 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa~~~~---~d~~ 328 (588)
.+..+..++.+++++.+. ++++++++++++|+||..++.+ +| ++|+++|+++|+|.+...- ....
T Consensus 142 ~~~~~~~~~~~~l~~~~~--------~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~ 213 (387)
T PRK07683 142 TRSTGFRLTAEALENAIT--------EKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHT 213 (387)
T ss_pred cCcccCCCCHHHHHHhcC--------cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcC
Confidence 874445678889998887 6789999999999999999854 45 8899999999999984321 0011
Q ss_pred CC-CC-CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 329 TL-GL-SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 329 ~l-~l-~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
++ .+ +...-.+++.|+.|.+|.+..++|++++.+++++.+...... . -.++..
T Consensus 214 ~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~l~~~~~~~~~~---~----------------------~~~~~~ 268 (387)
T PRK07683 214 SIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSYLAKHILKVHQY---N----------------------VTCASS 268 (387)
T ss_pred ChhhccCCcCCeEEEeeccccccCccceeEEEEcCHHHHHHHHHHHHh---c----------------------cCCCCh
Confidence 11 11 111235888999999995456699999998877665432100 0 001111
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGT 486 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~ 486 (588)
+.+ .++...|+.-.. -++++.++.+..++++.+.|.++ ++.++.| .++.+.+......+
T Consensus 269 ~~q----~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~-----~~~~~~~~~~~~~~- 327 (387)
T PRK07683 269 ISQ----YAALEALTAGKD-DAKMMRHQYKKRRDYVYNRLISM----------GLDVEKP-----TGAFYLFPSIGHFT- 327 (387)
T ss_pred HHH----HHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHHHc----------CCcccCC-----CeeEEEEEecccCC-
Confidence 111 122223321111 14556666777778888888763 2333332 34544443221101
Q ss_pred CcCHHHH-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 487 RIDPALV-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 487 ~i~~~~v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
++...+ .+++.++||.+++|..+. . .+.+++||+++. +.+++...++.|.++
T Consensus 328 -~~~~~~~~~ll~~~gI~v~pg~~f~----------------~--------~~~~~~Ri~~~~--~~~~~~~al~~l~~~ 380 (387)
T PRK07683 328 -MSSFDFALDLVEEAGLAVVPGSAFS----------------E--------YGEGYVRLSYAY--SIETLKEGLDRLEAF 380 (387)
T ss_pred -CCHHHHHHHHHHhCCEEEcCchhhC----------------C--------CCCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 334444 467788999999884331 0 112389999985 688999999999888
Q ss_pred hhh
Q 037063 566 LDA 568 (588)
Q Consensus 566 l~~ 568 (588)
++.
T Consensus 381 l~~ 383 (387)
T PRK07683 381 LQQ 383 (387)
T ss_pred HHh
Confidence 764
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-19 Score=189.53 Aligned_cols=294 Identities=13% Similarity=0.046 Sum_probs=188.9
Q ss_pred HHHHHHHHHh----CCCCCC-ceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 183 KIRKRIMDFM----NISEDD-YTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 183 ~~r~~ia~~l----ga~~~e-~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++|+.|++++ |.+.+. ..|++|+|+++++.+++..+ +++||+|++....+... ...++..|++++.++.+
T Consensus 71 ~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~~----~~~~~~~G~~v~~v~~~ 145 (383)
T TIGR03540 71 AYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAF-VNPGDIVLVPDPGYPVY----RIGTLFAGGEPYEMPLK 145 (383)
T ss_pred HHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHh-CCCCCEEEEeCCCCcch----HHHHHhcCCEEEEEecC
Confidence 4556666554 553222 24999999999999999999 89999977654433212 34456789999999986
Q ss_pred CC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCH---HHH-HHHHHcCcEEEEeCCCcC----C---C
Q 037063 258 WP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSY---MWM-SVAAEKGWHVLLDATALG----S---K 325 (588)
Q Consensus 258 ~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl---~~I-~~a~~~g~~vvvDaa~~~----~---~ 325 (588)
.+ ...++.+++++.+. +++++|++++++||||..+|. ++| ++|+++|+++|+|.+..- + .
T Consensus 146 ~~~g~~~d~~~l~~~~~--------~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~ 217 (383)
T TIGR03540 146 EENGFLPDFDAIPEDIA--------KKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAP 217 (383)
T ss_pred cccCCccCHHHHHhhcc--------ccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCc
Confidence 33 24578999988887 678999999999999999995 556 789999999999998531 1 1
Q ss_pred CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 326 DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 326 d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
.+..++ ......+++.|+.|.||.+..++|+++.++++++.+....... ..++.
T Consensus 218 ~~~~~~-~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~-------------------------~~~~~ 271 (383)
T TIGR03540 218 SFLEVD-GAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVKTNV-------------------------DSGVF 271 (383)
T ss_pred CcccCC-CcccCEEEEEecccccCCccceeeEEeCCHHHHHHHHHHHHhc-------------------------ccCCC
Confidence 111221 0112457788999999843344999999888776554321100 01111
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCC
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNG 485 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g 485 (588)
.+.+ .++..+|+...+. ++.+.++.+..++.+.+.|+++ ++.++.|. .+..+.+.+++ +
T Consensus 272 ~~~q----~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~L~~~----------~~~~~~~~----~~~~~~~~l~~--~ 330 (383)
T TIGR03540 272 QAIQ----YAAIAALNGPQDV-VKEIRKIYQRRRDLLLEALKKI----------GIDVEKPK----ATFYVWVPVPE--G 330 (383)
T ss_pred hHHH----HHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHhC----------CCEecCCC----cceEEEEECCC--C
Confidence 1111 2223344322121 3555667777788888888873 35555441 23334444432 1
Q ss_pred CCcCHHHHH-HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 486 TRIDPALVQ-KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 486 ~~i~~~~v~-~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
++...+. ++++++||.+++|..+.. .+.++||+|++. +.+++.+.++.|++
T Consensus 331 --~~~~~~~~~ll~~~gi~v~~g~~f~~------------------------~~~~~~Ris~~~--~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 331 --YTSAEFAARLLEETGVVVTPGVGFGE------------------------YGEGYIRISLTV--PDERLEEAVARIKK 382 (383)
T ss_pred --CCHHHHHHHHHHHCCEEEecchhhCc------------------------cCCCeEEEEecC--CHHHHHHHHHHHhh
Confidence 4455555 456789999998855410 112389999973 56777777776654
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=190.17 Aligned_cols=284 Identities=11% Similarity=0.065 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
.+++|+.+++++++++++ |++|+|+++++.+++..+ +++||+|+++...+. .+ ...++..|++++.++.+ ++
T Consensus 59 ~~~lr~~ia~~~~~~~~~--I~~~~G~~~~l~~~~~~~-~~~gd~Vli~~p~y~-~~---~~~~~~~g~~~~~v~~~-~~ 130 (352)
T PRK03321 59 AVELRAALAEHLGVPPEH--VAVGCGSVALCQQLVQAT-AGPGDEVIFAWRSFE-AY---PILVQVAGATPVQVPLT-PD 130 (352)
T ss_pred HHHHHHHHHHHhCcCHHH--EEECCCHHHHHHHHHHHh-cCCCCEEEeCCCCHH-HH---HHHHHHcCCEEEEccCC-CC
Confidence 468999999999987655 999999999999999988 899999876543222 12 23456789999999987 46
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH--cCcEEEEeCCCcC--C--CCCCCCCC-
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE--KGWHVLLDATALG--S--KDMDTLGL- 332 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~--~g~~vvvDaa~~~--~--~d~~~l~l- 332 (588)
+.++++++++.++ +++++|++++++|+||..+|.++| ++|+. +|+++++|++... . .....+..
T Consensus 131 ~~~~~~~l~~~~~--------~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 202 (352)
T PRK03321 131 HTHDLDAMAAAIT--------DRTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELV 202 (352)
T ss_pred CCCCHHHHHHhhc--------cCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHH
Confidence 7789999999887 678999999999999999999999 88887 5999999998421 1 00011111
Q ss_pred CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhh
Q 037063 333 SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSS 412 (588)
Q Consensus 333 ~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~ 412 (588)
....--+++.|+.|.||.+..++|++++++++++.+...... + +.+....
T Consensus 203 ~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~~--~--------------------------~~s~~~q-- 252 (352)
T PRK03321 203 RDHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKVAVP--F--------------------------SVNSLAQ-- 252 (352)
T ss_pred hhCCCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHhcCC--C--------------------------CCCHHHH--
Confidence 111123667799999984334599999988887766543211 0 1111111
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHH
Q 037063 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPAL 492 (588)
Q Consensus 413 ~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~ 492 (588)
.++..+|+....+ .+..++....++.+.+.|.++ ++.+. + ..|..+-+.+.. +...
T Consensus 253 -~~a~~~l~~~~~~--~~~~~~~~~~r~~~~~~L~~~----------~~~~~-~----~~g~~i~i~l~~------~~~~ 308 (352)
T PRK03321 253 -AAAIASLAAEDEL--LERVDAVVAERDRVRAALRAA----------GWTVP-P----SQANFVWLPLGE------RTAD 308 (352)
T ss_pred -HHHHHHhcCHHHH--HHHHHHHHHHHHHHHHHHHHC----------CCccC-C----CCCCEEEEeCCC------CHHH
Confidence 1222344322221 222222333345566777653 22221 1 235554444421 3566
Q ss_pred HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 493 VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 493 v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
+.+.|.++||.++. + +...||++++ +.+++++++++|++++.
T Consensus 309 ~~~~l~~~gI~v~~---~---------------------------~~~~iRi~~~---~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 309 FAAAAAEAGVVVRP---F---------------------------AGEGVRVTIG---APEENDAFLRAARAWRA 350 (352)
T ss_pred HHHHHHHCCEEEEc---c---------------------------CCCcEEEeeC---CHHHHHHHHHHHHHHhc
Confidence 77778889999864 1 1116999975 89999999999988754
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=202.76 Aligned_cols=327 Identities=14% Similarity=0.050 Sum_probs=214.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCH-HHHH---HHHHHhCCCC---CCC-eE-EEcCCCchhHHHHHHHHHHhcC
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQ-SSAF---KLLAESYPFY---SNP-RL-LTVYDHENEAAALMIESSKKRG 248 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~-T~al---~lv~~s~~~~---~gd-~l-l~~~e~~s~~~~~~~~~a~~~G 248 (588)
.+++.+..+.+++++|.+. +-+-+|+ +.|- -++++.+.-. +++ ++ +....|++|... +...|
T Consensus 542 lq~i~elq~~l~eLtGmd~----~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpas-----a~~~G 612 (954)
T PRK12566 542 RAMIDELEAWLCAITGFDA----ICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPAS-----AQMAG 612 (954)
T ss_pred HHHHHHHHHHHHHHHCCCe----EeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHH-----HHHCC
Confidence 6788899999999999952 4555543 3333 2233333111 222 34 456778765432 45679
Q ss_pred CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCC
Q 037063 249 ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDM 327 (588)
Q Consensus 249 ~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~ 327 (588)
.+|+.++.+ ++|.+|.++|++++++ .++++.+|.++++++..+...|+++| ++||++|++|++|+++..+ .
T Consensus 613 ieVv~Vp~D-~~G~iDle~L~a~I~~-----~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a--~ 684 (954)
T PRK12566 613 MRVVIVECD-PDGNVDLDDLKAKAAA-----AGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNA--Q 684 (954)
T ss_pred CEEEEeccC-CCCCcCHHHHHHHhhc-----cCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhh--c
Confidence 999999998 7899999999999972 12578889999998888888889999 9999999999999998764 1
Q ss_pred CCCC-CCCCCCcEEEeccCccCCCCCCceEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 328 DTLG-LSLFKPDFLICSFYKIFGENPSGFGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 328 ~~l~-l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
..+. ...+++|++++++||+||. |.|.|..++.. ...+.|.+...+..+ +.. +.+ +- +.|+.
T Consensus 685 ~~l~~Pg~~GADi~~~s~HKtf~~-P~G~GGP~vG~iav~~~L~pfLp~~P~-~d~----------~G~---~~-r~ga~ 748 (954)
T PRK12566 685 VGLARPADIGADVSHMNLHKTFCI-PHGGGGPGMGPIGVRAHLAPFVANHPV-VPV----------EGP---DP-NNGAV 748 (954)
T ss_pred cCCCChhhcCCCEEEecCCcccCc-CccCCCCccchhhhhhhhhhhccCCCC-cCC----------CCC---CC-CCCce
Confidence 2222 1344599999999998886 99999999888 666666665543201 100 000 00 22444
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCC--CcccEEEEEee
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRA--RYLINWLANALMNLHHPHSETGIPLVRIYGPKVMF--DRGPSLAFNVF 481 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~--~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~--~rg~iv~f~~~ 481 (588)
+...+.....+..++.++..+|.+....+. ..+++|+.++|.+. . .+.. .+.... ....+..+.++
T Consensus 749 S~~~~gsa~~l~~A~~Yi~~lG~eLk~aa~~ailnAnYla~rL~~~--------~-~v~~-~~~~~~~~hEfii~~~~l~ 818 (954)
T PRK12566 749 SAAPWGSASILPISWMYIAMMGPQLADASEVAILSANYLANQLGGA--------F-PVLY-RGRNERVAHECILDLRPLK 818 (954)
T ss_pred eecccchHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHhHhh--------C-CCCc-CCCCCCeeeEEEEEccccc
Confidence 333332223356888999999977444444 56889999999762 1 1222 221100 11222222333
Q ss_pred cCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHH
Q 037063 482 DWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAF 561 (588)
Q Consensus 482 ~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~ 561 (588)
+..| ++..++.+.|.++||...+- .. .+.+.+||+++.+++.+|+|+|+++
T Consensus 819 ~~~g--~~~~dvakRL~d~Gihapt~-~f--------------------------Pv~~~LmIepTE~eskeEIDrf~eA 869 (954)
T PRK12566 819 AQTG--ISEEDVAKRLMDYGFHAPTM-SF--------------------------PVPGTLMVEPTESESKAELDRFVEA 869 (954)
T ss_pred cccC--CCHHHHHHHHHHCCcEEeEE-ee--------------------------ccCCEEEEEeeeeCCHHHHHHHHHH
Confidence 3222 55677877777999986541 10 1122899999999999999999999
Q ss_pred HHHhhhh-hhcccccc
Q 037063 562 VSRFLDA-DFVEKERW 576 (588)
Q Consensus 562 l~~~l~~-~~~~~~~~ 576 (588)
|.++.++ .-|+...|
T Consensus 870 L~~I~~e~~~v~~g~~ 885 (954)
T PRK12566 870 MLSIRAEIGKVQEGNW 885 (954)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9998766 34544444
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-19 Score=192.89 Aligned_cols=349 Identities=13% Similarity=0.065 Sum_probs=213.4
Q ss_pred eeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHh
Q 037063 113 VCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFM 192 (588)
Q Consensus 113 vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~l 192 (588)
+-+|.++..++|..+++++.+.+.. ..... ..|+.. .-..++|+.|++++
T Consensus 79 ~i~~~~~~~~~P~~~~~~~~~~~~~-~~~~~---------------------------~~Y~~~--~G~~~LR~aia~~~ 128 (481)
T PTZ00377 79 LLEDPSVSSLFPADVVARAKEYLNA-IGGGT---------------------------GAYTDS--AGYPFVRKAVAAFI 128 (481)
T ss_pred hhcCccccccCCHHHHHHHHHHHHh-CCCcc---------------------------cCcCcc--cCCHHHHHHHHHHH
Confidence 3457778889999999887543321 10000 001111 11236777777776
Q ss_pred C------CCCCCceEEEecCHHHHHHHHHHhCCC-CCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCC-CCccC
Q 037063 193 N------ISEDDYTLVFTANQSSAFKLLAESYPF-YSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWP-NLRIH 264 (588)
Q Consensus 193 g------a~~~e~~vvft~g~T~al~lv~~s~~~-~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~-~~~i~ 264 (588)
+ ++++ +|++|+|+++|+.+++.++ + ++||+|++....+..+ ...++..|++++.++++.. ++.++
T Consensus 129 ~~~~g~~~~~~--~I~it~Ga~~al~~~~~~l-~~~~gD~Vlv~~P~y~~y----~~~~~~~g~~~v~v~~~~~~~~~~d 201 (481)
T PTZ00377 129 ERRDGVPKDPS--DIFLTDGASSGIKLLLQLL-IGDPSDGVMIPIPQYPLY----SAAITLLGGKQVPYYLDEEKGWSLD 201 (481)
T ss_pred HHhcCCCCChh--hEEEcCCHHHHHHHHHHHh-ccCCCCEEEECCCCchhH----HHHHHHcCCEEEEEEeccccCCCCC
Confidence 4 4444 4999999999999999998 6 7999988765544322 3455678999999998743 34689
Q ss_pred HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCH---HHH-HHHHHcCcEEEEeCCCcC----C-CCCCCC-----
Q 037063 265 SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSY---MWM-SVAAEKGWHVLLDATALG----S-KDMDTL----- 330 (588)
Q Consensus 265 ~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl---~~I-~~a~~~g~~vvvDaa~~~----~-~d~~~l----- 330 (588)
+++|+++++.. +....+++++++.+++||||..++. ++| ++|+++|++||+|.+-.- + ....++
T Consensus 202 ~~~l~~~l~~~--~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~ 279 (481)
T PTZ00377 202 QEELEEAYEQA--VRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLL 279 (481)
T ss_pred HHHHHHHHHHH--HhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHH
Confidence 99999998720 0111278999999999999999995 456 789999999999998321 1 001111
Q ss_pred CCCCC---C-CcEEEeccCc-cCCCCCCceEEEEE---eCcchhcccCCCCCCCceEeeecCCCcccccccccccccccC
Q 037063 331 GLSLF---K-PDFLICSFYK-IFGENPSGFGCLFV---KKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKF 402 (588)
Q Consensus 331 ~l~~~---~-~D~vv~S~~K-~~G~~P~G~G~L~v---~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~ 402 (588)
++... . .-+++.|+.| ++|++..++|++++ .+++++.+...... ..
T Consensus 280 ~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~--------------------------~~ 333 (481)
T PTZ00377 280 ELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASI--------------------------NL 333 (481)
T ss_pred hhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhhe--------------------------ec
Confidence 11110 0 1256779999 46754567999987 66666655432210 00
Q ss_pred CCCCccchhhHHHHHHHHH-----------HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCC
Q 037063 403 PESSISGVSSKLVECKGLD-----------HADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFD 471 (588)
Q Consensus 403 GT~~~~~~~~~~al~~aL~-----------~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~ 471 (588)
++..+.+ .++..+|+ +... +.++.++.++.++.+.+.|.++ +++++..|
T Consensus 334 ~~~~~~Q----~a~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~rr~~l~~~L~~~---------~g~~~~~p----- 393 (481)
T PTZ00377 334 CSNVVGQ----LMTGLMCNPPREGDASYPLYKRE--RDAIFTSLKRRAELLTDELNKI---------EGVSCQPV----- 393 (481)
T ss_pred CCChHHH----HHHHHHhCCCCCCcccHHHHHHH--HHHHHHHHHHHHHHHHHHHhcC---------CCcEeecC-----
Confidence 1111111 22223332 1111 2344444566677778888763 56776654
Q ss_pred cccEEEE-EeecCCC-------CCc--CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccE
Q 037063 472 RGPSLAF-NVFDWNG-------TRI--DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSV 541 (588)
Q Consensus 472 rg~iv~f-~~~~~~g-------~~i--~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~ 541 (588)
.|+...| .+.-..+ ..+ +...+.++|.+.||.+.+|..... ..+..+
T Consensus 394 ~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~-----------------------~~~~~~ 450 (481)
T PTZ00377 394 EGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQ-----------------------KPGTYH 450 (481)
T ss_pred CeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCC-----------------------CCCCCE
Confidence 3555554 2321100 001 122356788899999998854310 012238
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhhhhhhcc
Q 037063 542 VTAALGCLTNFEDTYRLWAFVSRFLDADFVE 572 (588)
Q Consensus 542 vRvSlg~~~t~eDv~~li~~l~~~l~~~~~~ 572 (588)
+|+|++ .+.|++++.++.|++++.+ |+.
T Consensus 451 ~Rls~~--~~~e~l~~~l~rl~~~~~~-~~~ 478 (481)
T PTZ00377 451 FRITIL--PPEEQIEEMVKKIKEFHES-FMK 478 (481)
T ss_pred EEEEEC--CCHHHHHHHHHHHHHHHHH-HHH
Confidence 999987 6788999999999998774 443
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-19 Score=190.05 Aligned_cols=163 Identities=14% Similarity=0.047 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcC-CCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVY-DHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~-e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
...++++++++++.|.+ + .++++|++.|+..++.++ +++||+|++.. .|.. .+..+...++..|+++++++..
T Consensus 70 p~~~~le~~lA~l~g~~--~--al~~~sG~~Ai~~~l~al-l~~Gd~Vl~~~~~~~~-t~~~~~~~~~~~G~~v~~vd~~ 143 (403)
T PRK07810 70 PTVSMFEERLRLIEGAE--A--CFATASGMSAVFTALGAL-LGAGDRLVAARSLFGS-CFVVCNEILPRWGVETVFVDGE 143 (403)
T ss_pred chHHHHHHHHHHHhCCC--c--EEEECChHHHHHHHHHHH-hCCCCEEEEccCCcch-HHHHHHHHHHHcCcEEEEECCC
Confidence 34678999999999974 3 888899999999998888 89999977554 4444 3333456677889999998753
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFK 336 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~ 336 (588)
|+++++++|+ ++|++|++.+++|++|.+.|+++| ++|+++|++|++|+++..|....++. .+
T Consensus 144 ------d~~~l~~ai~--------~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~~---~g 206 (403)
T PRK07810 144 ------DLSQWEEALS--------VPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLP---LG 206 (403)
T ss_pred ------CHHHHHHhcC--------cCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCChhh---cC
Confidence 7889999998 789999999999999999999999 99999999999999988773333332 34
Q ss_pred CcEEEeccCccCCCCCCc---eEEEEEeCcchh
Q 037063 337 PDFLICSFYKIFGENPSG---FGCLFVKKSSAS 366 (588)
Q Consensus 337 ~D~vv~S~~K~~G~~P~G---~G~L~v~~~~~~ 366 (588)
+|+++.|++|+++ +.| .|+++.+++.+.
T Consensus 207 aDivv~S~tK~l~--g~g~~~gG~v~~~~~~~~ 237 (403)
T PRK07810 207 ADVVVYSGTKHID--GQGRVLGGAILGDREYID 237 (403)
T ss_pred CcEEEccCCceec--CCcCceeEEEEeChHHHH
Confidence 8999999999887 445 587887776543
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-19 Score=189.77 Aligned_cols=169 Identities=13% Similarity=0.089 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCC-CchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYD-HENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e-~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+++++++++++|++ + +++++|+++|+.+++.++ +++||+|++... |.+ .+..+...++..|+++..++.
T Consensus 53 ~p~~~~le~~la~l~g~~--~--~~~~~sG~~Ai~~al~al-~~~Gd~Vl~~~~~~~~-t~~~~~~~~~~~g~~v~~v~~ 126 (380)
T TIGR01325 53 NPTVAAFEERIAALEGAE--R--AVATATGMSAIQAALMTL-LQAGDHVVASRSLFGS-TVGFISEILPRFGIEVSFVDP 126 (380)
T ss_pred CchHHHHHHHHHHHhCCC--c--EEEECCHHHHHHHHHHHH-hCCCCEEEEecCCcch-HHHHHHHHHHHhCCEEEEECC
Confidence 344678999999999983 2 788999999999999988 899999775444 433 344445667788999999876
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ ++++++++++ +++++|++.+++|++|...|+++| ++|+++|++|++|+++..+....++. .
T Consensus 127 ~------d~~~l~~~i~--------~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~pl~---~ 189 (380)
T TIGR01325 127 T------DLNAWEAAVK--------PNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQPLK---L 189 (380)
T ss_pred C------CHHHHHHhcC--------CCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchh---h
Confidence 3 6788888887 689999999999999999999999 99999999999999976653223332 3
Q ss_pred CCcEEEeccCccCCCCCCce-EEEEEeCcchhccc
Q 037063 336 KPDFLICSFYKIFGENPSGF-GCLFVKKSSASVLS 369 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~-G~L~v~~~~~~~l~ 369 (588)
++|+++.|++|++|.+...+ |+++.+++.++.+.
T Consensus 190 g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~ 224 (380)
T TIGR01325 190 GADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVA 224 (380)
T ss_pred CCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHH
Confidence 48999999999887211123 67777777666554
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=192.33 Aligned_cols=166 Identities=13% Similarity=0.072 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
.-..+++++|+++.|.+ + +++++|+++|+.+++.++ +++||+|++. ..|.+ ....+...++..|+++++++..
T Consensus 64 p~~~~Le~~iA~~~g~~--~--~l~~~sG~~Ai~~al~~l-l~~Gd~Vl~~~~~y~~-~~~~~~~~~~~~G~~v~~vd~~ 137 (400)
T PRK06234 64 PTSTEVENKLALLEGGE--A--AVVAASGMGAISSSLWSA-LKAGDHVVASDTLYGC-TFALLNHGLTRYGVEVTFVDTS 137 (400)
T ss_pred ccHHHHHHHHHHHhCCC--c--EEEEcCHHHHHHHHHHHH-hCCCCEEEEecCccch-HHHHHHHHHhhCCeEEEEECCC
Confidence 34568999999999973 2 788899999999988888 8999997654 44544 3333345567789999998763
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHc--CcEEEEeCCCcCCCCCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEK--GWHVLLDATALGSKDMDTLGLSL 334 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~--g~~vvvDaa~~~~~d~~~l~l~~ 334 (588)
|+++++++++ ++|++|++.+++|+||.+.|+++| ++|+++ |++|++|++...+....+++
T Consensus 138 ------d~e~l~~~i~--------~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l~--- 200 (400)
T PRK06234 138 ------NLEEVRNALK--------ANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQ--- 200 (400)
T ss_pred ------CHHHHHHHhc--------cCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCchh---
Confidence 6889999997 689999999999999999999999 999997 99999999977763223332
Q ss_pred CCCcEEEeccCccCCCCCCc---eEEEEEeCcchhccc
Q 037063 335 FKPDFLICSFYKIFGENPSG---FGCLFVKKSSASVLS 369 (588)
Q Consensus 335 ~~~D~vv~S~~K~~G~~P~G---~G~L~v~~~~~~~l~ 369 (588)
.++|+++.|++|+++ ..| .|+++.++++++.++
T Consensus 201 ~g~Divv~S~sK~l~--g~g~~~gG~v~~~~~~~~~l~ 236 (400)
T PRK06234 201 LGADVVVHSATKYLN--GHGDVIAGFVVGKEEFINQVK 236 (400)
T ss_pred hCCcEEEeecccccc--CCCCceeEEEEecHHHHHHHH
Confidence 248999999999887 334 599999888776654
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=190.99 Aligned_cols=168 Identities=18% Similarity=0.149 Sum_probs=128.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....+++++.++++.|. ++ +++|+|+++|+.+++.++ +++||+|++....+...+..+..++...|+++..++.
T Consensus 50 ~p~~~~le~~lA~l~g~--~~--v~~~~gg~~Ai~~~l~al-l~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~- 123 (382)
T TIGR02080 50 NPTRDLLQQALAELEGG--AG--AVVTNTGMSAIHLVTTAL-LGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ- 123 (382)
T ss_pred CchHHHHHHHHHHHhCC--Cc--EEEEcCHHHHHHHHHHHH-cCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECC-
Confidence 34467899999999995 23 999999999999999999 9999997755443332343334555666788877642
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFK 336 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~ 336 (588)
.+.++++++++ +++++|++++++|+||...|+++| ++|+++|++|++|+++..+....++. ..
T Consensus 124 -----~d~~~l~~ai~--------~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl~---~g 187 (382)
T TIGR02080 124 -----GDEQALRAALA--------QKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLA---LG 187 (382)
T ss_pred -----CCHHHHHHhcC--------cCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCchh---hC
Confidence 36788999887 679999999999999999999999 99999999999999987763223332 23
Q ss_pred CcEEEeccCccCCCCCCc--eEEEEEeC-cchhcc
Q 037063 337 PDFLICSFYKIFGENPSG--FGCLFVKK-SSASVL 368 (588)
Q Consensus 337 ~D~vv~S~~K~~G~~P~G--~G~L~v~~-~~~~~l 368 (588)
+|+++.|++|+++. +.| .|++++++ +.++++
T Consensus 188 aDivv~S~sK~l~G-~~~~~~G~i~~~~~~~~~~l 221 (382)
T TIGR02080 188 ADLVLHSCTKYLNG-HSDVIAGAVIAKDPQVAEEL 221 (382)
T ss_pred CCEEEeecceeccC-CCCceeEEEEeCCHHHHHHH
Confidence 89999999997762 444 67777754 444444
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-19 Score=191.26 Aligned_cols=161 Identities=14% Similarity=0.134 Sum_probs=130.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+.+.+.|+++.|++ + .++++|+++|+.+++.++ +++||+|++. ..|+. .+..+...++..|+++++++.
T Consensus 63 ~p~~~~Le~~lA~leg~~--~--al~~~sG~~Ai~~al~~l-l~~GD~Vlv~~~~y~~-t~~~~~~~~~~~Gv~v~~vd~ 136 (431)
T PRK08248 63 NPTTDVFEKRIAALEGGI--G--ALAVSSGQAAITYSILNI-ASAGDEIVSSSSLYGG-TYNLFAHTLPKLGITVKFVDP 136 (431)
T ss_pred CchHHHHHHHHHHHhCCC--c--EEEECCHHHHHHHHHHHH-hCCCCEEEEccCchhh-HHHHHHHHHHhCCEEEEEECC
Confidence 344668999999999973 2 788999999999999888 8999997654 44544 344446677889999999976
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
. ++++++++|+ +++++|++.+++|+||.+.|+++| ++|+++|++||+|+++..|....++ .+
T Consensus 137 ~------d~e~l~~ai~--------~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl---~~ 199 (431)
T PRK08248 137 S------DPENFEAAIT--------DKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPI---EH 199 (431)
T ss_pred C------CHHHHHHhcC--------CCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChh---Hc
Confidence 3 7889999887 689999999999999999999999 9999999999999998776433333 34
Q ss_pred CCcEEEeccCccCCCCCCc--eEEEEEeCc
Q 037063 336 KPDFLICSFYKIFGENPSG--FGCLFVKKS 363 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G--~G~L~v~~~ 363 (588)
++|+++.|+||++| +.| +|.+++.+.
T Consensus 200 gaDivv~S~tK~lg--g~g~~~Gg~v~~~~ 227 (431)
T PRK08248 200 GADIVVHSATKFIG--GHGTSIGGVIVDSG 227 (431)
T ss_pred CCCEEEEcCccccC--CCCCceEEEEEeCC
Confidence 59999999999998 334 888887543
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-19 Score=189.91 Aligned_cols=309 Identities=17% Similarity=0.123 Sum_probs=206.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCC-ceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDD-YTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e-~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++.+.+.+.+.+..|.+-+. .+|+.|.|+++|+.+++.++ +.+||+|+++.++..++. ...+..|++++.+++
T Consensus 68 ~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~-~~pGDeVlip~P~Y~~y~----~~~~~~gg~~v~v~l 142 (393)
T COG0436 68 PELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLAL-LNPGDEVLIPDPGYPSYE----AAVKLAGGKPVPVPL 142 (393)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHh-cCCCCEEEEeCCCCcCHH----HHHHhcCCEEEEEeC
Confidence 345555555555555543222 34999999999999999999 999999776555544233 334557999999997
Q ss_pred cCC--CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCC--CcC--CC-
Q 037063 257 AWP--NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDAT--ALG--SK- 325 (588)
Q Consensus 257 ~~~--~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa--~~~--~~- 325 (588)
+.+ +..++.++|+++++ ++||+++++.++||||.+++-++ | ++|++||+++|.|.+ .+. +.
T Consensus 143 ~~~~~~f~~d~~~l~~~i~--------~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~ 214 (393)
T COG0436 143 DEEENGFKPDLEDLEAAIT--------PKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAE 214 (393)
T ss_pred CcCccCCcCCHHHHHhhcC--------ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCC
Confidence 532 67899999999998 79999999999999999999776 4 789999999999998 222 10
Q ss_pred CCCCCCCCCC-CCcEEEeccCccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCC
Q 037063 326 DMDTLGLSLF-KPDFLICSFYKIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP 403 (588)
Q Consensus 326 d~~~l~l~~~-~~D~vv~S~~K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G 403 (588)
....+.+... ..-+.+.|++|.+++..-++|++++. +++++.+...... . ..+
T Consensus 215 ~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~---~----------------------~~~ 269 (393)
T COG0436 215 HPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSY---L----------------------TSC 269 (393)
T ss_pred cCCHhhcCCCcceEEEEecccccccccccceeEeecChHHHHHHHHHHHHh---c----------------------ccC
Confidence 1111222211 12356679999888656679999999 6666554422100 0 122
Q ss_pred CCCccchhhHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeec
Q 037063 404 ESSISGVSSKLVECKGLDHADA-LGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFD 482 (588)
Q Consensus 404 T~~~~~~~~~~al~~aL~~l~~-~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~ 482 (588)
.+.+.+ .+...||+.-+. --++...+..++.++.+++.|.++ +++.+..+ ..|+...|.-..
T Consensus 270 ~~~~~Q----~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~---------~g~~~~~~----p~Ga~Y~~~~i~ 332 (393)
T COG0436 270 APTPAQ----YAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEI---------GGLSVVKP----PEGAFYLFPKIP 332 (393)
T ss_pred CCHHHH----HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhc---------CCeeeccC----CCeeEEEEeecC
Confidence 333333 334466664321 114555567778888999999874 55766653 235666654322
Q ss_pred CCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHH
Q 037063 483 WNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 483 ~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l 562 (588)
.. .-+.+...++|++.||.+.+|..- .. ..|.+.||+|+.. ..++++..++.+
T Consensus 333 ~~--~d~~~f~~~Ll~~~gV~v~PG~~F----------------g~-------~~g~~~vRis~~~--~~~~l~~a~~rl 385 (393)
T COG0436 333 EL--LDSEEFAKKLLEEAGVAVVPGSGF----------------GE-------PPGEGYVRLSLAT--SEETLEEALRRL 385 (393)
T ss_pred CC--CCHHHHHHHHHHhCCEEEeccccc----------------CC-------CCCCCeEEEEEec--CHHHHHHHHHHH
Confidence 11 122345678999999999998421 11 0244599999764 559999999999
Q ss_pred HHhhhh
Q 037063 563 SRFLDA 568 (588)
Q Consensus 563 ~~~l~~ 568 (588)
.++++.
T Consensus 386 ~~~~~~ 391 (393)
T COG0436 386 ARFLAE 391 (393)
T ss_pred HHHHHh
Confidence 998764
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-19 Score=173.16 Aligned_cols=384 Identities=14% Similarity=0.110 Sum_probs=265.7
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
++.+||=-.+-|++|+++.+.+..++... +.- .-| ++..+-.. + -..-+.+-..++
T Consensus 66 ~~~iYlcGNSLGLmPK~t~~~~~~eLDkW--ak~------------av~--gH~~GkvP-W-------~~~De~il~l~~ 121 (465)
T KOG3846|consen 66 KPVIYLCGNSLGLMPKSTRNSINAELDKW--AKC------------AVE--GHFKGKVP-W-------VSIDEPILPLLA 121 (465)
T ss_pred CCeEEEeccccccCchhhHhHHHHHHHHH--Hhh------------hhh--cccccccc-e-------eecchhhhhhhh
Confidence 67899999999999999988877666431 100 000 00000000 1 112246778889
Q ss_pred HHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCe---EE-EcCCCchhHHHHHHHHHHhcCCEEE----EEeccCCCC
Q 037063 190 DFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPR---LL-TVYDHENEAAALMIESSKKRGARVS----SAEFAWPNL 261 (588)
Q Consensus 190 ~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~---ll-~~~e~~s~~~~~~~~~a~~~G~~v~----~v~~~~~~~ 261 (588)
.+.|+.++| |....+-|..++.++-+| ++|..+ |+ -...++|..+ .+...++..|..+. .+.....+.
T Consensus 122 ~iVGA~e~E--vavmNsLTvNlh~Ll~sF-yKPTekR~KILlE~kaFPSDhY-AiesQ~~lhG~~~e~sm~~iePREGEe 197 (465)
T KOG3846|consen 122 PIVGAQENE--VAVMNSLTVNLHSLLISF-YKPTEKRFKILLEKKAFPSDHY-AIESQCKLHGISPENSMIQIEPREGEE 197 (465)
T ss_pred hhccCCchh--hhhHhhhhhHHHHHHHHh-cCCcchhhhhhhccCCCCchHH-HHHhhhhhcCCChHHheEEeccccccc
Confidence 999998776 999999999999999999 888654 54 3344555333 23455677776542 333332344
Q ss_pred ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEE
Q 037063 262 RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFL 340 (588)
Q Consensus 262 ~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~v 340 (588)
.+..+++...|.. ..+...+|+|+.++..||..+++..| ..-+..|++|-.|-|++++ -.++.|..|++||.
T Consensus 198 tlRteDILd~IEk-----ngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvg--NVpL~LHdWgVDFA 270 (465)
T KOG3846|consen 198 TLRTEDILDTIEK-----NGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVG--NVPLQLHDWGVDFA 270 (465)
T ss_pred chhHHHHHHHHHh-----cCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhc--CCceEEeecCCceE
Confidence 5778888888872 22568999999999999999999999 6666789999999999998 35677788889999
Q ss_pred EeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcc-cccccccccccccCCCCCccchhhHHHHHHH
Q 037063 341 ICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEI-IELETLDESSQSKFPESSISGVSSKLVECKG 419 (588)
Q Consensus 341 v~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~-~~~~~~~~~~f~e~GT~~~~~~~~~~al~~a 419 (588)
+-..||.+..++.|+|.++|..+......|...||.|--....+..++ ..+.+.. -.| +...|++... .++...
T Consensus 271 CWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa-~Gf-RiSNPpi~~v---~al~~S 345 (465)
T KOG3846|consen 271 CWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGA-LGF-RISNPPIIDV---VALRSS 345 (465)
T ss_pred EEeeecccccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccc-ccc-ccCCCcHhHH---HHHHhh
Confidence 999999665558899999999988776666655531211000000011 1111111 145 5556776664 888999
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCC--CCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHH
Q 037063 420 LDHADALGLILISNRARYLINWLANALMNLHHPHSET--GIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLA 497 (588)
Q Consensus 420 L~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~--g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l 497 (588)
|+..++..++++++|...|+.||..-++.....+.+- ..+.+.|+.|..-..||.-+++.+..+ ...|...|
T Consensus 346 Le~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp------~~~vfqeL 419 (465)
T KOG3846|consen 346 LELFAQFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSP------TPKVFQEL 419 (465)
T ss_pred HHHHHHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCC------chHHHHHH
Confidence 9999999999999999999998877776654322110 235678889877678888888776542 34566667
Q ss_pred HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec-CCCCCHHHHHHHHHHHHHhhhhh
Q 037063 498 DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL-GCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 498 ~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl-g~~~t~eDv~~li~~l~~~l~~~ 569 (588)
.++|+.... ....+||+.+ +.|||+.||++++.+|.+.+|..
T Consensus 420 ~krGv~~Dk------------------------------R~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~ 462 (465)
T KOG3846|consen 420 HKRGVIGDK------------------------------RRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKL 462 (465)
T ss_pred HHcCeeccc------------------------------cCCCceEeecchhhccHHHHHHHHHHHHHHHHHh
Confidence 777875321 1112899997 79999999999999999988763
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=201.69 Aligned_cols=322 Identities=14% Similarity=0.067 Sum_probs=209.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHH-----HHHHHHHHhCCCCCCC----eEE-EcCCCchhHHHHHHHHHHhc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQS-----SAFKLLAESYPFYSNP----RLL-TVYDHENEAAALMIESSKKR 247 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T-----~al~lv~~s~~~~~gd----~ll-~~~e~~s~~~~~~~~~a~~~ 247 (588)
.+++.++.+.+++++|.+ . +.++.|++ .++ ++++.+.+++|+ +|+ +...|.++. ..+...
T Consensus 541 l~~i~e~q~~l~eltG~d--~--~sl~~~~ga~ge~agL-~a~r~~~~~~G~~~r~~vlis~~aH~snp-----~sa~~~ 610 (954)
T PRK05367 541 RELIDQLEAWLAEITGYD--A--VSLQPNAGAQGEYAGL-LAIRAYHESRGEGHRDVCLIPSSAHGTNP-----ASAVMA 610 (954)
T ss_pred HHHHHHHHHHHHHHHCCC--C--EEECccHHHHHHHHHH-HHHHHHhhccCCCCCCEEEEEchhhhhhH-----HHHHHC
Confidence 688899999999999985 3 77888776 333 566666566776 344 566676532 234667
Q ss_pred CCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-C
Q 037063 248 GARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS-K 325 (588)
Q Consensus 248 G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~-~ 325 (588)
|.+|+.++++ .++.+|.++|+++++. ...++.+|+++++++..+...|+++| ++||++|++++||+++..+ .
T Consensus 611 G~~vv~v~~d-~~G~iD~~~L~~~i~~-----~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~ 684 (954)
T PRK05367 611 GMKVVVVACD-ENGNIDLDDLRAKAEE-----HADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQV 684 (954)
T ss_pred CCEEEEECCC-CCCCcCHHHHHHHHhc-----cCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhcc
Confidence 9999999998 6789999999999972 01357778888888764445899999 9999999999999998643 1
Q ss_pred CCCCCCCCCCCCcEEEeccCccCCC----CCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccc-
Q 037063 326 DMDTLGLSLFKPDFLICSFYKIFGE----NPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS- 400 (588)
Q Consensus 326 d~~~l~l~~~~~D~vv~S~~K~~G~----~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~- 400 (588)
.+.. ...+++|++++|+||+||. ++.|+|++++++.+. +...|+ .+. .. .++
T Consensus 685 ~l~~--pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~----p~lpg~--~v~--~~-------------~~~~ 741 (954)
T PRK05367 685 GLAR--PGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLA----PFLPGH--PVQ--IA-------------GGET 741 (954)
T ss_pred CCCC--hhhcCCCEEEecCcccCCCCcCCCCCceEEEeeccccc----ccCCCC--ccC--cC-------------CCCC
Confidence 1111 1134499999999998763 244577999986543 333331 100 00 000
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHH---HHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE
Q 037063 401 KFPESSISGVSSKLVECKGLDHADALGLILISNRAR---YLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA 477 (588)
Q Consensus 401 e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~---~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~ 477 (588)
..|+.....+.....+..+..++..+|.+.+.++.+ .+++|+.++|.+. . .+...+|.....+..++.
T Consensus 742 ~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~--------~-~~~~~~~~~~~~~e~i~~ 812 (954)
T PRK05367 742 GIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH--------Y-PVLYTGANGRVAHECILD 812 (954)
T ss_pred CcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh--------c-CccccCCCCCcccceEEE
Confidence 123333222211134445777888888665555554 9999999999873 1 222233322222334555
Q ss_pred EE-eecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHH
Q 037063 478 FN-VFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTY 556 (588)
Q Consensus 478 f~-~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~ 556 (588)
+. +....| +...++.+.|.++||...+-.+ ...+.+||++..+++.+|+|
T Consensus 813 ~~~~~~~~g--~~~~di~krL~d~G~~~~t~~~---------------------------pv~~~l~i~ptE~~s~~elD 863 (954)
T PRK05367 813 LRPLKESTG--ITVDDIAKRLIDYGFHAPTMSF---------------------------PVAGTLMVEPTESESKAELD 863 (954)
T ss_pred eecccccCC--CCHHHHHHHHHHCCCeEeecCC---------------------------ccCCEEEEEeeecCCHHHHH
Confidence 53 222222 4567888888999998765211 11228999999999999999
Q ss_pred HHHHHHHHhhhhh-hcccccc
Q 037063 557 RLWAFVSRFLDAD-FVEKERW 576 (588)
Q Consensus 557 ~li~~l~~~l~~~-~~~~~~~ 576 (588)
+|+++|..+.++- -|+...|
T Consensus 864 r~~~al~~i~~e~~~~~~~~~ 884 (954)
T PRK05367 864 RFCDAMIAIRAEIDEVEAGEW 884 (954)
T ss_pred HHHHHHHHHHHHHHHhhcCCC
Confidence 9999999887643 3344344
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-19 Score=190.47 Aligned_cols=298 Identities=13% Similarity=0.165 Sum_probs=195.3
Q ss_pred HHHHHHHHHh----CC--CCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 183 KIRKRIMDFM----NI--SEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 183 ~~r~~ia~~l----ga--~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++|+.+++++ |. +++ .+|++|+|+++|+.+++.++ +++||+|++....+..+ ...++..|++++.++.
T Consensus 61 ~lr~~ia~~~~~~~g~~~~~~-~~i~~t~G~~~al~~~~~~l-~~~gd~vl~~~p~y~~~----~~~~~~~g~~~~~~~~ 134 (378)
T PRK07682 61 ELRQEIAKYLKKRFAVSYDPN-DEIIVTVGASQALDVAMRAI-INPGDEVLIVEPSFVSY----APLVTLAGGVPVPVAT 134 (378)
T ss_pred HHHHHHHHHHHHHhCCCCCCC-CcEEEeCChHHHHHHHHHHh-CCCCCEEEEeCCCchhh----HHHHHHcCCEEEEeec
Confidence 5666666665 44 333 24999999999999999999 89999977554433212 3455667999999987
Q ss_pred cC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCCCcCC-C-----
Q 037063 257 AW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYM---WM-SVAAEKGWHVLLDATALGS-K----- 325 (588)
Q Consensus 257 ~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa~~~~-~----- 325 (588)
+. .++.++.++|++++. +++++++++.++||||..+|.+ +| ++|+++++++|+|.+.... .
T Consensus 135 ~~~~~~~~d~~~l~~~~~--------~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~ 206 (378)
T PRK07682 135 TLENEFKVQPAQIEAAIT--------AKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYT 206 (378)
T ss_pred CCccCCCCCHHHHHhhcC--------cccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCC
Confidence 53 245789999999887 6789999999999999999854 46 7899999999999984321 0
Q ss_pred CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 326 DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 326 d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
.+..+. ......+++.|++|.||.+..++|++++++++++.+....... ..+++
T Consensus 207 ~~~~~~-~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~~~~~-------------------------~~~~~ 260 (378)
T PRK07682 207 SFASIK-GMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQYS-------------------------MMCAP 260 (378)
T ss_pred Chhhcc-cccCCEEEEecCcccccChhhhhhhhhcCHHHHHHHHHHHHhh-------------------------ccCCC
Confidence 011111 1112468899999999853344999999998887665322100 00111
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCC
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNG 485 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g 485 (588)
.+.+ .++..+|+.-.. -++++.++.++.++++.+.|.++ ++++..| .++.+.+......+
T Consensus 261 ~~~q----~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~~----------~~~~~~p-----~g~~~~~~~~~~~~ 320 (378)
T PRK07682 261 TMAQ----FAALEALRAGND-DVIRMRDSYRKRRNFFVTSFNEI----------GLTCHVP-----GGAFYAFPSISSTG 320 (378)
T ss_pred HHHH----HHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHHHC----------CCccCCC-----CeeEEEEEeccCCC
Confidence 1111 222233332111 15667777788888889988874 2333333 34444443221111
Q ss_pred CCcCHHHHH-HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 486 TRIDPALVQ-KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 486 ~~i~~~~v~-~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
++...+. ++++++||.++.|..+.. .+.++||+|++. +.+++++.++.|++
T Consensus 321 --~~~~~~~~~ll~~~gv~v~pg~~f~~------------------------~~~~~iRis~~~--~~~~l~~~l~~l~~ 372 (378)
T PRK07682 321 --LSSEEFAEQLLLEEKVAVVPGSVFGE------------------------SGEGFIRCSYAT--SLEQLQEAMKRMKR 372 (378)
T ss_pred --CCHHHHHHHHHHhCCEEEcCchhhCc------------------------CCCCeEEEEeCC--CHHHHHHHHHHHHH
Confidence 3455555 455688999998854410 122399999884 68999999999998
Q ss_pred hhhh
Q 037063 565 FLDA 568 (588)
Q Consensus 565 ~l~~ 568 (588)
+++.
T Consensus 373 ~l~~ 376 (378)
T PRK07682 373 FVEN 376 (378)
T ss_pred HHhh
Confidence 8753
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-19 Score=188.67 Aligned_cols=165 Identities=15% Similarity=0.079 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcC-CCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVY-DHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~-e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
...++++++.+++++|.+ + +++++|+++|+.+++.++ +++||+|++.. .|.+ ...++.. ++..|+++..++.
T Consensus 52 np~~~~lE~~lA~l~g~~--~--~l~~~sG~~Ai~~~l~~l-l~~GD~Vlv~~~~y~~-~~~~~~~-~~~~g~~v~~~~~ 124 (385)
T PRK08574 52 NPTLRPLEEALAKLEGGV--D--ALAFNSGMAAISTLFFSL-LKAGDRVVLPMEAYGT-TLRLLKS-LEKFGVKVVLAYP 124 (385)
T ss_pred CccHHHHHHHHHHHhCCC--c--EEEeCCHHHHHHHHHHHH-hCCCCEEEEcCCCchh-HHHHHHH-hhccCcEEEEECC
Confidence 455678999999999973 2 667788899999999988 89999976544 4444 4444333 3667888887643
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCC-cceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKK-KRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSL 334 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~-~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~ 334 (588)
+.++++++++ + ++++|++++++|+||...|+++| ++|+++|++|++|+++..|....++.
T Consensus 125 -------d~~~l~~~i~--------~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~--- 186 (385)
T PRK08574 125 -------STEDIIEAIK--------EGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPLR--- 186 (385)
T ss_pred -------CHHHHHHhcC--------ccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChhh---
Confidence 4688988887 5 89999999999999999999999 99999999999999988774333332
Q ss_pred CCCcEEEeccCccCCCCCCc--eEEEEEe-Ccchhcc
Q 037063 335 FKPDFLICSFYKIFGENPSG--FGCLFVK-KSSASVL 368 (588)
Q Consensus 335 ~~~D~vv~S~~K~~G~~P~G--~G~L~v~-~~~~~~l 368 (588)
.++|+++.|++|+++. |.+ .|+++++ +++.+++
T Consensus 187 ~GaDivv~S~sK~l~g-~~d~~gG~vi~~~~~~~~~~ 222 (385)
T PRK08574 187 HGADFVVHSLTKYIAG-HNDVVGGVAVAWSGEFLEEL 222 (385)
T ss_pred hCCcEEEeeCceeecC-CCCceeEEEEECcHHHHHHH
Confidence 3489999999998862 433 3645654 4444444
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.84 E-value=7e-18 Score=184.41 Aligned_cols=397 Identities=10% Similarity=0.049 Sum_probs=243.2
Q ss_pred HHHhCCCCCCc--hhHHHHHhhhccCCCC-CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCccc
Q 037063 83 FTKVFPQYLQT--DQADRIRAQDYFHLSL-NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFD 159 (588)
Q Consensus 83 f~~~~p~y~~~--~~~~~iR~~~f~~l~~-~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~ 159 (588)
|....|+-++. ..++.+++.-.|.... ..--|+.|--++..+.+++-.+..... |++. ..|.
T Consensus 99 l~~~~P~~g~~~~~il~~~~~~i~p~~~~~~hP~f~a~~~~~~~~~~~lgd~l~sa~-----n~~~-----~~~~----- 163 (539)
T PLN02590 99 LPDSAPERPESLKELLDDVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNAGL-----SVVG-----FTWL----- 163 (539)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHhccCCcCCCCCeeEeccCCCcHHHHHHHHHHHhc-----cccc-----CCcc-----
Confidence 33344555542 3566666543444321 345688888888888888776543321 1100 0111
Q ss_pred ccccccccccccccCCchhHHHHHHHHHHHHHhCCCCC-----CceEEEecCHHHHHHHHHHhCC---CC----CC-Ce-
Q 037063 160 ICYRSVNLNSWLQYGSEESELESKIRKRIMDFMNISED-----DYTLVFTANQSSAFKLLAESYP---FY----SN-PR- 225 (588)
Q Consensus 160 ~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lga~~~-----e~~vvft~g~T~al~lv~~s~~---~~----~g-d~- 225 (588)
.++ ...+++.++-+++++++|.++. ...-+||+|+|+|+-.++.+.. .+ .+ .+
T Consensus 164 -----~sP--------a~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~ 230 (539)
T PLN02590 164 -----TSP--------AATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQL 230 (539)
T ss_pred -----cCc--------hhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCE
Confidence 011 1278999999999999999752 1348899999998644332211 11 11 12
Q ss_pred EE-EcCCCchhHHHHHHHHHHhcCC---EEEEEeccC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccC
Q 037063 226 LL-TVYDHENEAAALMIESSKKRGA---RVSSAEFAW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARY 300 (588)
Q Consensus 226 ll-~~~e~~s~~~~~~~~~a~~~G~---~v~~v~~~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~ 300 (588)
++ +...-|+ ++ .+.|+-.|. .++.||++. +++++|+++|+++|.++ +.....+-+|+.+..++.||.+-
T Consensus 231 vvy~S~~aH~-Sv---~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d--~~~g~~P~~VvaTaGTT~tGaiD 304 (539)
T PLN02590 231 VVYGSDQTHS-SF---RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHD--LAKGFIPFFICATVGTTSSAAVD 304 (539)
T ss_pred EEEecCCchH-HH---HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHH--HhcCCCcEEEEEEeCCCCCcccC
Confidence 33 3333333 23 456666776 588999874 35789999999999732 22234578899999999999999
Q ss_pred CHHHH-HHHHHcCcEEEEeCCCcCC----CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcc--hhccc--CC
Q 037063 301 SYMWM-SVAAEKGWHVLLDATALGS----KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSS--ASVLS--GS 371 (588)
Q Consensus 301 pl~~I-~~a~~~g~~vvvDaa~~~~----~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~--~~~l~--~~ 371 (588)
|+++| ++|+++|++++||||-... .....+.....++|.+++++|||++. |.++|++++|+.. .+.+. +.
T Consensus 305 pl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~-p~~cg~llvr~~~~l~~a~~~~~~ 383 (539)
T PLN02590 305 PLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFA-NQTCSPLWVKDRYSLIDALKTNPE 383 (539)
T ss_pred CHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCc-CcCEEEEEecCHHHHHHHhhcCHH
Confidence 99999 9999999999999984332 11122222234589999999999887 9999999999852 12221 11
Q ss_pred CCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccC
Q 037063 372 TSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHH 451 (588)
Q Consensus 372 ~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h 451 (588)
+.. ...+......+..++.. +.| ..+-+ ..+..+|+.+-..|+.++.++..+|++++.+.|++
T Consensus 384 YL~--~~~~~~~~~~d~~d~~i-------~ls-Rr~ra----LklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~--- 446 (539)
T PLN02590 384 YLE--FKVSKKDTVVNYKDWQI-------SLS-RRFRS----LKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQ--- 446 (539)
T ss_pred HhC--CcccccccCCCccccCC-------CCC-CchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 110 00000000000000100 111 11222 23446666666667888889999999999999988
Q ss_pred CCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCH----HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHh
Q 037063 452 PHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDP----ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLE 527 (588)
Q Consensus 452 ~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~----~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~ 527 (588)
.+.++++.| ..-++|+|.+.......... ..+.+.+.+.|...-+...
T Consensus 447 ------~~~fel~~~----~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~------------------ 498 (539)
T PLN02590 447 ------DPSFEVVTT----RYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTA------------------ 498 (539)
T ss_pred ------CCCeEEecC----CceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeE------------------
Confidence 377999886 34689999986421110001 1233334444544322211
Q ss_pred hhcCCCCCcCCccEEEEec-CCCCCHHHHHHHHHHHHHhhh
Q 037063 528 TRSGTNETRSGVSVVTAAL-GCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 528 ~~~~~~~~~~g~~~vRvSl-g~~~t~eDv~~li~~l~~~l~ 567 (588)
..|..++|+++ .+.++.+||+.+|+.|.+..+
T Consensus 499 --------~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~ 531 (539)
T PLN02590 499 --------LSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHAS 531 (539)
T ss_pred --------ECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 14555999998 588999999999999988643
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-19 Score=188.93 Aligned_cols=294 Identities=14% Similarity=0.089 Sum_probs=189.6
Q ss_pred HHHHHHHHHh----CCCCCCc-eEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 183 KIRKRIMDFM----NISEDDY-TLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 183 ~~r~~ia~~l----ga~~~e~-~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++|+.|++++ |.+-+.. .|++|+|+++|+.+++.++ +++||+|++....+... ...++..|++++.++++
T Consensus 77 ~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~-~~~gd~Vlv~~P~y~~~----~~~~~~~g~~~~~v~~~ 151 (394)
T PRK05942 77 SFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAY-VNPGDVVLVPSPAYPAH----FRGPLIAGAQIYPIILK 151 (394)
T ss_pred HHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHh-CCCCCEEEEcCCCCcch----HHHHHHcCCEEEEeecC
Confidence 5666666665 5432222 4889999999999999999 89999976544433212 23345679999999987
Q ss_pred CC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCCCcC----CCCCC
Q 037063 258 WP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYM---WM-SVAAEKGWHVLLDATALG----SKDMD 328 (588)
Q Consensus 258 ~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa~~~----~~d~~ 328 (588)
.. ++.++.+++++.+. ++++++++++++||||..++.+ +| ++|+++|++||+|.+..- +....
T Consensus 152 ~~~~~~~d~~~l~~~~~--------~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~ 223 (394)
T PRK05942 152 PENDWLIDLSSIPEEVA--------QQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPT 223 (394)
T ss_pred CccCCccCHHHHHHhcc--------ccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCC
Confidence 32 34689999998887 6899999999999999999954 56 789999999999998321 10011
Q ss_pred CC-CCCC-CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 329 TL-GLSL-FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 329 ~l-~l~~-~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
.+ .+.. ....+++.||.|.||.++.++|++++++++++.+....... ..++..
T Consensus 224 ~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~~~~~~~-------------------------~~~~~~ 278 (394)
T PRK05942 224 SLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLRTLKTNL-------------------------DYGIFS 278 (394)
T ss_pred ChhhCCCccccEEEEecchhccCChhhheeeeecCHHHHHHHHHHHhhc-------------------------ccCCCH
Confidence 11 1111 12357788999999854456999999988877665432110 001111
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE-EEEEeecCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS-LAFNVFDWNG 485 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i-v~f~~~~~~g 485 (588)
+.+ .++..+|+...+ .++++.++.++..+++.+.|.++ ++.++.| .+++ +-+.++. +
T Consensus 279 ~~q----~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~~----------~~~~~~~-----~~~~f~~~~~~~--~ 336 (394)
T PRK05942 279 ALQ----KAAETALQLPDS-YLQQVQERYRTRRDFLIQGLGEL----------GWNIPPT-----KATMYLWVPCPV--G 336 (394)
T ss_pred HHH----HHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHC----------CCeecCC-----CeeeEEEEECCC--C
Confidence 111 233455554333 25677788888888888888764 2444433 3453 3344432 1
Q ss_pred CCcCHHH-HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 486 TRIDPAL-VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 486 ~~i~~~~-v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
++... +.+++.++||.+..|.... . .+.++||++++ ++.+++.+.|++
T Consensus 337 --~~~~~~~~~~l~~~gV~v~~g~~f~----------------~--------~~~~~iRis~~-----~~~~~l~~~l~~ 385 (394)
T PRK05942 337 --MGSTDFALNVLQKTGVVVTPGNAFG----------------E--------GGEGYVRISLI-----ADCDRLGEALDR 385 (394)
T ss_pred --CCHHHHHHHHHHHCCEEEeCChhhC----------------c--------CCCCeEEEEec-----CCHHHHHHHHHH
Confidence 33444 4567888999998873220 0 12239999996 245667777666
Q ss_pred hhh
Q 037063 565 FLD 567 (588)
Q Consensus 565 ~l~ 567 (588)
+.+
T Consensus 386 l~~ 388 (394)
T PRK05942 386 LKQ 388 (394)
T ss_pred HHH
Confidence 543
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.8e-19 Score=184.19 Aligned_cols=289 Identities=16% Similarity=0.161 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHhC-CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCC
Q 037063 181 ESKIRKRIMDFMN-ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWP 259 (588)
Q Consensus 181 ~~~~r~~ia~~lg-a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~ 259 (588)
..++++.++++++ .+++. |+.+.|+++.|.++++.+ ..+||++++....++ .+ ...++..|++++.++.+ +
T Consensus 59 ~~~l~~a~a~~~~~~~~~~--V~~gnGsde~i~~l~~~~-~~~gd~vl~~~Ptf~-~Y---~~~a~~~g~~~~~v~~~-~ 130 (356)
T COG0079 59 YRELRAALAEYYGVVDPEN--VLVGNGSDELIELLVRAF-VEPGDTVLIPEPTFS-MY---EIAAQLAGAEVVKVPLK-E 130 (356)
T ss_pred HHHHHHHHHHHhCCCCcce--EEEcCChHHHHHHHHHHh-hcCCCEEEEcCCChH-HH---HHHHHhcCCeEEEeccc-c
Confidence 4589999999999 66554 999999999999999999 899999876655544 23 34567789999999997 4
Q ss_pred CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHc--CcEEEEeCC--CcCCCCCCCCCCCC
Q 037063 260 NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEK--GWHVLLDAT--ALGSKDMDTLGLSL 334 (588)
Q Consensus 260 ~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~--g~~vvvDaa--~~~~~d~~~l~l~~ 334 (588)
..+|.+.+.+.+. +++++|.+++++||||..++.++| +++... +.+||||.| .+.+ ...+.+-.
T Consensus 131 -~~~d~~~~~~~~~--------~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~--~~~~~l~~ 199 (356)
T COG0079 131 -FRLDLDAILAAIR--------DKTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSP--ESSLELLK 199 (356)
T ss_pred -cccCHHHHHHhhh--------cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCC--chhhhhcc
Confidence 8899999999998 689999999999999999999999 666543 889999998 5555 22222222
Q ss_pred CCC-cEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhH
Q 037063 335 FKP-DFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSK 413 (588)
Q Consensus 335 ~~~-D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~ 413 (588)
.+. =+++-||.|.||.+..++|+++.++++++.|......+ . .+.++ .
T Consensus 200 ~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr~p~--~--------------------------v~~~a---~ 248 (356)
T COG0079 200 YPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRPPF--N--------------------------VSSPA---L 248 (356)
T ss_pred CCCCEEEEEecHHhhhcchhceeeccCCHHHHHHHHHhcCCC--C--------------------------CCHHH---H
Confidence 223 36777999999987778999999999988776544221 0 11111 1
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHH
Q 037063 414 LVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALV 493 (588)
Q Consensus 414 ~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v 493 (588)
++..++|+.-+. ++...+++...+.++.+.|+++ +...++. ..++.+.+.+.+ + - ...+
T Consensus 249 ~aa~aal~~~~~--~~~~~~~~~~~r~rl~~~l~~~---------~~~~v~p-----S~aNFvlv~~~~--~--~-~~~l 307 (356)
T COG0079 249 AAAIAALRDADY--LEESVERIREERERLYAALKAL---------GLFGVFP-----SQANFVLVRVPD--A--E-AAAL 307 (356)
T ss_pred HHHHHHcccHHH--HHHHHHHHHHHHHHHHHHHHhC---------CCCeecC-----CCCcEEEEECCC--c--c-HHHH
Confidence 233344443332 5777888888999999999986 2122432 235666666554 1 2 4567
Q ss_pred HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 494 QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 494 ~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.+.|.++||.+|.... . + .+..++|||+| |.|+.++|+++|++++..
T Consensus 308 ~~~L~~~giivR~~~~-~-~-----------------------~~~~~lRitvg---t~een~~ll~AL~~~~~~ 354 (356)
T COG0079 308 AEALLKKGILVRDCSS-V-G-----------------------LLPGYLRITVG---TPEENDRLLAALREVLKG 354 (356)
T ss_pred HHHHHHCCEEEEeCCC-C-C-----------------------CCCCeEEEEeC---CHHHHHHHHHHHHHHHhc
Confidence 8888888999995311 0 0 11229999999 889999999999998764
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-18 Score=183.95 Aligned_cols=286 Identities=16% Similarity=0.184 Sum_probs=190.4
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCc
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLR 262 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~ 262 (588)
++|+.|++++|+++++ |++|+|+++++.+++.++ +++||+|++....+. .....++..|++++.++.+ +++.
T Consensus 75 ~lr~~ia~~~~~~~~~--i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~----~~~~~~~~~g~~~~~v~~~-~~~~ 146 (371)
T PRK05166 75 ALREAIAARTGVPADR--IILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFP----LHEDYPTMMGARVERVTVT-PDLG 146 (371)
T ss_pred HHHHHHHHHhCcCHHH--EEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChH----HHHHHHHHcCCeEEEeecC-CCCC
Confidence 7999999999997665 999999999999999998 899999775543322 2245667789999999987 5678
Q ss_pred cCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH--cCcEEEEeCCCc--CC-CC-CCCCC-CC-
Q 037063 263 IHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE--KGWHVLLDATAL--GS-KD-MDTLG-LS- 333 (588)
Q Consensus 263 i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~--~g~~vvvDaa~~--~~-~d-~~~l~-l~- 333 (588)
++.+++++.++ +++++|++++++||||..+|.+++ ++++. .++++|+|.+.. .. .+ ...+. +.
T Consensus 147 ~~~~~l~~~~~--------~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 218 (371)
T PRK05166 147 FDLDALCAAVA--------RAPRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKA 218 (371)
T ss_pred CCHHHHHHhhh--------cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhh
Confidence 99999999887 678999999999999999999988 66654 478999999832 21 00 01111 11
Q ss_pred CCCCcEEEeccCccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhh
Q 037063 334 LFKPDFLICSFYKIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSS 412 (588)
Q Consensus 334 ~~~~D~vv~S~~K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~ 412 (588)
....-+++.||.|.||.+..++|++++. +++++.+...... . ++..+.+
T Consensus 219 ~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~~--~-------------------------~~~~~~q--- 268 (371)
T PRK05166 219 RGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRTP--F-------------------------NVNGAAQ--- 268 (371)
T ss_pred cCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhccC--C-------------------------CCCHHHH---
Confidence 1112478899999998545669998874 4555544322111 0 0111111
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHH
Q 037063 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPAL 492 (588)
Q Consensus 413 ~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~ 492 (588)
.++..++..- .. +++..+..+..++++.+.|++. ++++. | ..|..+-+.+. .+...
T Consensus 269 -~~~~~~l~~~-~~-~~~~~~~~~~~r~~l~~~L~~~----------g~~~~-p----~~g~fl~~~~~------~~~~~ 324 (371)
T PRK05166 269 -AAALAALDDE-EH-LAKGVALALAERERLKKELAEM----------GYRIA-P----SRANFLFFDAR------RPASA 324 (371)
T ss_pred -HHHHHHhcCH-HH-HHHHHHHHHHHHHHHHHHHHHC----------cCeeC-C----CcCCEEEEeCC------CCHHH
Confidence 1222333211 11 4555566666677788888873 23332 2 23444444432 23456
Q ss_pred HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 493 VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 493 v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
+.+.|.++||.++.|... ...++||++++ +.++.++|++.|++++.
T Consensus 325 l~~~l~~~gi~v~p~~~~--------------------------~~~~~iRi~~~---~~~~~~~l~~~l~~i~~ 370 (371)
T PRK05166 325 VAEALLRQGVIVKPWKQP--------------------------GFETFIRVSIG---SPEENDHFVAALDKVLE 370 (371)
T ss_pred HHHHHHHCCeEEecCCCC--------------------------CCCCeEEEEcC---CHHHHHHHHHHHHHHhh
Confidence 667776789999886310 11238999988 67889999999988653
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.6e-19 Score=185.61 Aligned_cols=290 Identities=13% Similarity=0.103 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCC-CeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC-
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSN-PRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW- 258 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~g-d~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~- 258 (588)
..++|+.|++++|+++++ |++|+|+++++.+++.++ ..+| ++|++....++ .....++..|++++.++.+.
T Consensus 61 ~~~lr~~ia~~~~~~~~~--I~~t~G~~~~l~~~~~~~-~~~g~~~vlv~~p~y~----~~~~~~~~~g~~~~~v~~~~~ 133 (364)
T PRK04781 61 PPGLRSALAALYGCAPEQ--LLIGRGSDEAIDLLVRAL-CVPGRDAVLVTPPVFG----MYAVCARLQNAPLVEVPLVDG 133 (364)
T ss_pred HHHHHHHHHHHhCcChHH--EEEeCCHHHHHHHHHHHh-cCCCCCeEEEcCCChH----HHHHHHHHcCCEEEEEecCCC
Confidence 368999999999998765 999999999999999998 7888 67776555443 22345577899999999842
Q ss_pred CC-CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH--cCcEEEEeCCC--cCCCCCCCCCC
Q 037063 259 PN-LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE--KGWHVLLDATA--LGSKDMDTLGL 332 (588)
Q Consensus 259 ~~-~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~--~g~~vvvDaa~--~~~~d~~~l~l 332 (588)
.+ ..++.+++.+.+.. +++++|++++++||||..+|.+++ ++++. ++++||+|.+- +.. +...+.+
T Consensus 134 ~~~~~~d~~~l~~~~~~-------~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~-~~~~~~~ 205 (364)
T PRK04781 134 ADGFHADVPAIVAAALA-------SNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSD-VPSAVGL 205 (364)
T ss_pred ccCCCcCHHHHHHHHhc-------cCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcC-CcchHHH
Confidence 22 34688887655431 679999999999999999999998 76654 47899999983 221 0111111
Q ss_pred -CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchh
Q 037063 333 -SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVS 411 (588)
Q Consensus 333 -~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~ 411 (588)
.....-+++.||.|.||.+..++|+++.++++++.+....... + .+ .+
T Consensus 206 ~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~~~~-~---------------------------~~--~~- 254 (364)
T PRK04781 206 LARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRCQAPY-P---------------------------VP--TP- 254 (364)
T ss_pred HhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHhccCCC-C---------------------------CC--HH-
Confidence 1122347788999999964567999999988887665433110 0 00 00
Q ss_pred hHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 412 SKLVECKGLDHADALG---LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 412 ~~~al~~aL~~l~~~G---~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
+...++..+..-. ..+..++.++.++.+.+.|+++ +++..+.| ..|..+-+.+.+
T Consensus 255 ---~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~---------~~~~~~~p----~~g~f~~~~~~~------ 312 (364)
T PRK04781 255 ---CAALAEQALSAPALAVTARRVAEVRAERERLHAALAQL---------PGVRRVYP----SQGNFLLVRFDD------ 312 (364)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC---------CCCCeECC----CCCcEEEEEcCC------
Confidence 1112222222211 1223334556667788888764 34422223 235555555432
Q ss_pred CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 489 DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 489 ~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
...+.+.+.++||.|+.|.... ....+|||+++ +.++.++|+++|+++..
T Consensus 313 -~~~~~~~l~~~gI~v~~~~~~~-------------------------~~~~~~Ris~~---~~~~~~~l~~al~~~~~ 362 (364)
T PRK04781 313 -AEAAFQALLAAGVVVRDQRAAP-------------------------RLSDALRITLG---TPEQNDRVLAALQRTQA 362 (364)
T ss_pred -HHHHHHHHHHCCeEEeeCCCCC-------------------------CCCCeEEEeCC---CHHHHHHHHHHHHHHHh
Confidence 4667778889999999873210 01128999988 68999999999988643
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.4e-19 Score=188.07 Aligned_cols=294 Identities=12% Similarity=0.042 Sum_probs=187.8
Q ss_pred HHHHHHHHHh----CCCCCCc-eEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 183 KIRKRIMDFM----NISEDDY-TLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 183 ~~r~~ia~~l----ga~~~e~-~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++|+.|++++ |.+.+.. .|++|+|+++|+.+++..+ +++||+|++....+. +....++..|++++.++.+
T Consensus 73 ~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~-~~~gd~Vl~~~P~y~----~~~~~~~~~g~~~~~v~~~ 147 (385)
T PRK09276 73 EFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAF-VNPGDVVLVPDPGYP----VYKIGTIFAGGEPYFMPLK 147 (385)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHh-CCCCCEEEEcCCCCc----ChHHHHHHcCCEEEEEecC
Confidence 5666666665 5432222 4999999999999999999 899999776544332 1234556789999999986
Q ss_pred CC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC----CCCCC
Q 037063 258 WP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG----SKDMD 328 (588)
Q Consensus 258 ~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~----~~d~~ 328 (588)
.+ ...++++++++.+. +++++|++++++||||..+|.++ | ++|+++|++||+|.+..- +....
T Consensus 148 ~~~g~~~d~~~l~~~~~--------~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~ 219 (385)
T PRK09276 148 EENGFLPDLDAIPEDVA--------KKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPP 219 (385)
T ss_pred CCCCCcCCHHHHHHhcc--------ccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCC
Confidence 33 34578899988876 67899999999999999999754 5 778999999999998432 10011
Q ss_pred CC-CCCC-CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 329 TL-GLSL-FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 329 ~l-~l~~-~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
.+ .+.. ....+++.|+.|.||.+..++|+++.++++++.+...... . ..+...
T Consensus 220 ~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~l~~~~~~~~~~----~---------------------~~~~~~ 274 (385)
T PRK09276 220 SFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNADLIAGLGKVKSN----V---------------------DSGVFQ 274 (385)
T ss_pred ChhccCCCcCCEEEEecchhhcCCcchhheeeeCCHHHHHHHHHHHhh----c---------------------cCCCCH
Confidence 11 1111 1245788999999984334499999988887766432210 0 000111
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE-EEEEeecCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS-LAFNVFDWNG 485 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i-v~f~~~~~~g 485 (588)
..+ .++..+|+..... ++++.++.+..++++.+.|+++ +++++.| .+++ +.+.+.+ +
T Consensus 275 ~~q----~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~~----------~~~~~~~-----~~~~~~~v~~~~--~ 332 (385)
T PRK09276 275 AIQ----EAGIAALNGPQEV-VEELRKIYQERRDILVEGLRKL----------GLEVEPP-----KATFYVWAPVPK--G 332 (385)
T ss_pred HHH----HHHHHHHcCcHHH-HHHHHHHHHHHHHHHHHHHHhC----------CCcccCC-----CcceEEEEECCC--C
Confidence 111 2223344321121 4666777777788888888874 3444443 2343 3344432 1
Q ss_pred CCcCHHHHH-HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 486 TRIDPALVQ-KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 486 ~~i~~~~v~-~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
++...+. ++++++||.++.|..+.. .+.++||+|++. +.+++...++.|.+
T Consensus 333 --~~~~~l~~~ll~~~gi~v~~g~~f~~------------------------~~~~~~Ris~~~--~~~~l~~~l~~l~~ 384 (385)
T PRK09276 333 --YTSAEFATLLLDKAGVVVTPGNGFGE------------------------YGEGYFRIALTV--PDERIEEAVERIKK 384 (385)
T ss_pred --CCHHHHHHHHHHhCCEEECCchhhCC------------------------CCCCeEEEEeCC--CHHHHHHHHHHHhh
Confidence 4455554 556778999998854310 122389999973 66777766666543
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-18 Score=182.09 Aligned_cols=303 Identities=8% Similarity=0.052 Sum_probs=195.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCC-ceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDD-YTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e-~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++.+.+++.+++++|++.+. .+|++|+|+++|+.+++.++ +.+||+|++....+..+ ...++..|++++.+++
T Consensus 69 ~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~ 143 (384)
T PRK12414 69 AALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISAL-VHPGDEVIYFEPSFDSY----APIVRLQGATPVAIKL 143 (384)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHh-cCCCCEEEEeCCCccch----HHHHHHcCCEEEEEec
Confidence 466778888888888875221 24999999999999999999 89999976544333322 2344567999999998
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC----CCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG----SKDMD 328 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~----~~d~~ 328 (588)
+..++.+|.++|+++++ +++++|++++++||||..++.++ | ++|+++|+++++|++..- +....
T Consensus 144 ~~~~~~~d~~~l~~~l~--------~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~ 215 (384)
T PRK12414 144 SPEDFRVNWDEVAAAIT--------PRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHH 215 (384)
T ss_pred CccccccCHHHHHhhcC--------cccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCcc
Confidence 75566789999999887 67999999999999999987554 5 778999999999998321 11111
Q ss_pred CC-CCCC-CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 329 TL-GLSL-FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 329 ~l-~l~~-~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
++ .+.. ..--+++.|++|.||.+..++|++++.+++++.+...... . ..++..
T Consensus 216 ~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~~~~---~----------------------~~~~s~ 270 (384)
T PRK12414 216 SMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQF---M----------------------VFSADT 270 (384)
T ss_pred CcccCcCccCcEEEEecccccccCccceEEEEecCHHHHHHHHHHHhh---e----------------------ecCCCc
Confidence 11 1111 1124889999999985456689999998887765433210 0 001111
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEE-EeecCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAF-NVFDWNG 485 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f-~~~~~~g 485 (588)
+.+ .++...|+.-. ...++.+..++.++.+.+.|.++ +++++.| .|+++.+ .+....+
T Consensus 271 ~~q----~a~~~~l~~~~--~~~~~~~~~~~~r~~l~~~L~~~----------g~~~~~~-----~gg~~~~~~~~~~~~ 329 (384)
T PRK12414 271 PMQ----HAFAEALAEPA--SYLGLGAFYQRKRDLLARELAGS----------RFELLPS-----EGSFFMLARFRHFSD 329 (384)
T ss_pred HHH----HHHHHHhcCCh--HHHHHHHHHHHHHHHHHHHHHhC----------CCeecCC-----CcceEEEEcccccCC
Confidence 111 22223332100 12345556666777788888763 2444432 3555544 3332111
Q ss_pred CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 486 TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 486 ~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
..+.+.+.+++.+.||.+.+|..+.. . ..+.++||+|++. +.|+++..++.|.+
T Consensus 330 -~~~~~~~~~~l~~~gV~v~pg~~f~~---------------~-------~~~~~~iRis~~~--~~~~~~~~~~rl~~ 383 (384)
T PRK12414 330 -ESDSDFVLRLIRDARVATIPLSAFYT---------------D-------GTDTGLIRLSFSK--DDATLVEGARRLCS 383 (384)
T ss_pred -CCHHHHHHHHHHhCCEEEecchhhcC---------------C-------CCCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence 12345556788899999998843310 0 0112389999984 67888888877754
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-19 Score=187.09 Aligned_cols=161 Identities=11% Similarity=0.124 Sum_probs=124.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....++++++|+++.|+. +.|+|++ +++|+..++.++ +++||+|++ ...|++ ....+ ..+++.|+++++++.
T Consensus 46 ~p~~~~lE~~la~leg~~---~~v~~ss-G~~Ai~~~l~al-l~~Gd~Vv~~~~~y~~-t~~~~-~~l~~~G~~v~~v~~ 118 (397)
T PRK05939 46 TPTTAALEAKITKMEGGV---GTVCFAT-GMAAIAAVFLTL-LRAGDHLVSSQFLFGN-TNSLF-GTLRGLGVEVTMVDA 118 (397)
T ss_pred CHHHHHHHHHHHHHhCCC---eEEEeCC-HHHHHHHHHHHH-cCCCCEEEECCCcccc-HHHHH-HHHHhcCCEEEEECC
Confidence 456789999999999985 3455555 589999999988 999999765 444554 22222 345778999999876
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
. +.++++++++ ++|++|++.+++|++|.+.|+++| ++||++|+++++|+++..|....++ ..
T Consensus 119 ~------d~e~l~~~l~--------~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~~---~~ 181 (397)
T PRK05939 119 T------DVQNVAAAIR--------PNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLFRPK---DV 181 (397)
T ss_pred C------CHHHHHHhCC--------CCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccccccCcc---cc
Confidence 3 6789999987 789999999999999999999999 9999999999999998776322222 23
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEeC
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVKK 362 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~~ 362 (588)
++|+++.|++|++|.+...+|++++.+
T Consensus 182 gaDivv~S~sK~~~g~g~~igg~v~~~ 208 (397)
T PRK05939 182 GASLVINSLSKYIAGHGNALGGAVTDT 208 (397)
T ss_pred CCEEEEecCeecccCCCCeEEEEEecC
Confidence 499999999998873223356666643
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-18 Score=185.31 Aligned_cols=160 Identities=13% Similarity=0.140 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
.....+++.|+++.|.+ . .++++++++|+.+++.++ +++||+|++ ...|+++ ...+...++..|++++.++.+
T Consensus 63 p~~~~le~~lA~l~g~~--~--al~~~SG~~Ai~~al~al-l~pGd~VIv~~~~y~~t-~~~~~~~~~~~G~~v~~vd~~ 136 (427)
T PRK05994 63 PTNAVLEERVAALEGGT--A--ALAVASGHAAQFLVFHTL-LQPGDEFIAARKLYGGS-INQFGHAFKSFGWQVRWADAD 136 (427)
T ss_pred ccHHHHHHHHHHHhCCC--c--EEEEcCHHHHHHHHHHHH-hCCCCEEEEecCcchhH-HHHHHHHHHhcCcEEEEECCC
Confidence 34568999999999984 2 788899999999999998 899999664 5566653 333345567889999998753
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFK 336 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~ 336 (588)
+.++++++|+ ++|++|++++++|++|.+.|+++| ++|+++|+++++|+++..|....+++ ++
T Consensus 137 ------d~~~l~~ai~--------~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~pl~---~g 199 (427)
T PRK05994 137 ------DPASFERAIT--------PRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRPIE---HG 199 (427)
T ss_pred ------CHHHHHHhcC--------cCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccCCccc---cC
Confidence 6788999887 789999999999999999999999 99999999999999998874344443 45
Q ss_pred CcEEEeccCccCCCCCCc-eEEEEEeC
Q 037063 337 PDFLICSFYKIFGENPSG-FGCLFVKK 362 (588)
Q Consensus 337 ~D~vv~S~~K~~G~~P~G-~G~L~v~~ 362 (588)
+|+++.|+||++|. +.| +|.+++..
T Consensus 200 aDivv~S~tK~lgg-~~~~~gG~v~~~ 225 (427)
T PRK05994 200 ADIVVHSLTKFLGG-HGNSMGGIIVDG 225 (427)
T ss_pred CcEEEEcCccccCC-CCCcEEEEEEeC
Confidence 99999999998882 333 77777753
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-18 Score=178.47 Aligned_cols=319 Identities=13% Similarity=0.112 Sum_probs=217.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
+..+.+..+.+++++|+. ..+.++|+|.|+.+++.++.+.+||+|+ ++..+.+ .. +..-..|+++++|++
T Consensus 33 G~~v~~FE~~~ae~~G~k----~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvA-Ta----n~i~~~Ga~PVFvDi 103 (374)
T COG0399 33 GPFVRRFEQAFAEYLGVK----YAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVA-TA----NAVLLVGAKPVFVDI 103 (374)
T ss_pred ChHHHHHHHHHHHHhCCC----eEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHH-HH----HHHHHcCCeEEEEec
Confidence 456778999999999995 2899999999999999988899999966 4555554 22 233457999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-----CCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS-----KDMDTL 330 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~-----~d~~~l 330 (588)
|..++.||++.|+++|+ ++||.|+..|. -|...+++.| ++|+++|++||.|+||+.| +.+..+
T Consensus 104 d~~T~nid~~~ie~aIt--------~~tKAIipVhl---~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~ 172 (374)
T COG0399 104 DPDTLNIDPDLIEAAIT--------PRTKAIIPVHL---AGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSF 172 (374)
T ss_pred CCcccCCCHHHHHHHcc--------cCCeEEEEehh---ccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccc
Confidence 98889999999999999 77999999987 8999999999 9999999999999999887 223444
Q ss_pred CCCCCCCcEEEeccC--ccCCCCCCceEEEEEeCc-chhcccCCCCCCCceEeeecCCCcccccccccccccccCC-CCC
Q 037063 331 GLSLFKPDFLICSFY--KIFGENPSGFGCLFVKKS-SASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP-ESS 406 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~--K~~G~~P~G~G~L~v~~~-~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G-T~~ 406 (588)
| |+.++||| |.++. . ..|+++.+++ +.++++..... |....... .+ .+.+.| ...
T Consensus 173 G------d~~~fSF~~~K~itt-g-EGGav~tnd~ela~k~~~lr~h--G~~~~~~~-----~y------~~~~~G~N~r 231 (374)
T COG0399 173 G------DIGAFSFHATKNLTT-G-EGGAVVTNDEELAEKARSLRNH--GLSRDAVF-----KY------LHEELGYNYR 231 (374)
T ss_pred c------ceEEEEecCCCCccc-c-CceEEEeCCHHHHHHHHHHHHh--CcCCCccc-----cc------eeeecccccC
Confidence 4 89999998 77763 1 3577777764 44455443322 22100000 00 011334 233
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc-ccEEEEEeecCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR-GPSLAFNVFDWNG 485 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r-g~iv~f~~~~~~g 485 (588)
+..+ ....++..|+. ++.+.++.+.+++++.+.|+++ +.+.+-.+...... -......+...
T Consensus 232 m~~i----qAAigl~QL~~--l~~~~~~R~~~a~~Y~~~l~~~---------~~~~~p~~~~~~~~~~~~~~i~~~~~-- 294 (374)
T COG0399 232 LTEI----QAAIGLAQLER--LDEINERRREIAQIYAEALKGL---------PGITLPPEPDGAVHAWHLYTILVDEE-- 294 (374)
T ss_pred HHHH----HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC---------CCccccCCCCCceeeeeeeEEEecCC--
Confidence 3333 12356666766 5889999999999999999985 34333222211111 12333333332
Q ss_pred CCcCHHHHHHHHHhCCcEeccccccCcccccc-hHH---------HHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHH
Q 037063 486 TRIDPALVQKLADRHNISLSCGFLQNIFFSGE-YEQ---------ERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDT 555 (588)
Q Consensus 486 ~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~-~~~---------~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv 555 (588)
.++.+.+...|++.||. ++..+-|-...+ |.. ..+.. .....+++-++...+.+|+
T Consensus 295 -~~~R~~l~~~L~~~gi~--~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~-----------~~~r~l~LP~~p~l~~~~~ 360 (374)
T COG0399 295 -GISRDALMESLKEAGVG--AVVYFRPLHLQPAYRQLGYFPEGDLPNAED-----------LSERILSLPLHPNLSEEDV 360 (374)
T ss_pred -CCCHHHHHHHHHhCCCC--ceEEeeccccchhhhcccccccCCCchHHH-----------HhhCeEEccCCCCCCHHHH
Confidence 36688899999999887 323333211110 000 00111 1122899999999999999
Q ss_pred HHHHHHHHHhhhh
Q 037063 556 YRLWAFVSRFLDA 568 (588)
Q Consensus 556 ~~li~~l~~~l~~ 568 (588)
+++++.|++++..
T Consensus 361 ~~V~~~l~~~~~~ 373 (374)
T COG0399 361 DRVIEALKEVLGS 373 (374)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998753
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-19 Score=185.40 Aligned_cols=292 Identities=12% Similarity=0.043 Sum_probs=187.3
Q ss_pred HHHHHHHHHh----CCCCCCc-eEEEecCHHHHHHHHHHhCCCCCC---CeEEEcCCCchhHHHHHHHHHHhcCCEEEEE
Q 037063 183 KIRKRIMDFM----NISEDDY-TLVFTANQSSAFKLLAESYPFYSN---PRLLTVYDHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 183 ~~r~~ia~~l----ga~~~e~-~vvft~g~T~al~lv~~s~~~~~g---d~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
++|+.|++++ |++.+.. .|++|+|+++|+.+++..+ .++| |+|+++...+. +....++..|++++.+
T Consensus 40 ~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~-~~~g~~~d~Vl~~~p~y~----~~~~~~~~~g~~~~~v 114 (350)
T TIGR03537 40 ALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVF-IDPEEDRRRVIFGTPGYP----VYERGALFAGGEPTAV 114 (350)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHH-cCCCCCCceEEEcCCCCc----chHHHHHhcCCEEEEc
Confidence 4555555554 7433322 5999999999999999988 7777 57776544332 2244567789999999
Q ss_pred eccC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcC---CCC
Q 037063 255 EFAW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALG---SKD 326 (588)
Q Consensus 255 ~~~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~---~~d 326 (588)
+.+. .+..+|++++++++. ++++++++++++||||..+| +++| ++|+++|+++|+|.+..- +..
T Consensus 115 ~~~~~~~~~~d~~~l~~~~~--------~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~ 186 (350)
T TIGR03537 115 KLKKEDGFLLRLEKVEKSIL--------EETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEP 186 (350)
T ss_pred ccCcccCCccCHHHHHHhhh--------hccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCC
Confidence 9863 234589999999987 67899999999999999999 5566 889999999999998532 110
Q ss_pred CCCC-CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 327 MDTL-GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 327 ~~~l-~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
...+ .+ .....+++.|++|.+|.+..++|+++.++++++.+...... + ..+++
T Consensus 187 ~~~~~~~-~~~~~i~~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~------------------------~-~~~~~ 240 (350)
T TIGR03537 187 PHSALEV-GIENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRAN------------------------F-GVASP 240 (350)
T ss_pred CCchhhc-CcCCEEEEeecccccCCccccceeeecCHHHHHHHHHHHHh------------------------h-ccCCC
Confidence 1111 11 11134778899999985334589998877776655532211 0 01111
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE-EEEEeecCC
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS-LAFNVFDWN 484 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i-v~f~~~~~~ 484 (588)
++.+ .++..++.. .. -+.++.++++...+.+.+.|.++ ++++..| .++. +-+.+++.
T Consensus 241 ~~~q----~~~~~~l~~-~~-~~~~~r~~l~~~~~~~~~~l~~~----------g~~~~~~-----~g~~~~~~~~~~~- 298 (350)
T TIGR03537 241 DFVQ----AAAKAAWSD-DN-HVLERRKIFKRKRDLFIEFFNKV----------GLEYLYP-----DATFYLWVKVPSG- 298 (350)
T ss_pred HHHH----HHHHHHhCC-cH-HHHHHHHHHHHHHHHHHHHHHHC----------CCcccCC-----CeEEEEEEECCCC-
Confidence 1111 222233331 11 13556677777778888888763 2444432 2343 33444431
Q ss_pred CCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 485 GTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 485 g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
++...+.+.|.++||.+..|..... .+..++|+|++ .+.+++++.++.+++
T Consensus 299 ---~~~~~l~~~L~~~gv~v~~g~~f~~------------------------~~~~~~Ri~~~--~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 299 ---IDAKDYALRLLENGIVVAPGENFGS------------------------GEEGYVRVALV--PTLEECEEALRLWER 349 (350)
T ss_pred ---CCHHHHHHHHHHCCEEEcCchhhCC------------------------CCCCEEEEEec--CCHHHHHHHHHHHhc
Confidence 3566777777778999998754310 11238999985 578888888877664
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-17 Score=177.62 Aligned_cols=301 Identities=11% Similarity=0.071 Sum_probs=208.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 177 ESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 177 ~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
..+++.++-+.+++++|.+++++.-++|+|+|+|+-..+.... ..+...++.+.+-|. ++ .+.++-.|.+++.||
T Consensus 131 s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~-Sv---~KAa~llgi~~~~Vp 206 (470)
T PLN02263 131 SRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHY-SV---FKAARMYRMECVKVD 206 (470)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccH-HH---HHHHHhcCCcceEec
Confidence 4789999999999999998766678999999999766544432 112224555544443 23 466777899999999
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCc-----EEEEeCCCcC---CC-
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGW-----HVLLDATALG---SK- 325 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~-----~vvvDaa~~~---~~- 325 (588)
.+ +++++|.++|+++|.++ ..++-+|+.+..++++|.+-|+++| ++|+++|+ +++||||-.+ |.
T Consensus 207 ~d-~~g~mD~~aL~~aI~~d-----~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~ 280 (470)
T PLN02263 207 TL-VSGEIDCADFKAKLLAN-----KDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFV 280 (470)
T ss_pred cC-CCCcCcHHHHHHHHHhC-----CCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhc
Confidence 98 88999999999999731 1347788899999999999999999 99999997 9999999332 31
Q ss_pred -CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccC--CCCCCCceEeeecCCCcccccccccccccccC
Q 037063 326 -DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSG--STSSVSTIMGIEPSFSEIIELETLDESSQSKF 402 (588)
Q Consensus 326 -d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~--~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~ 402 (588)
....+++.. ++|.+++++|||++. |.++|++++|+...+.+.. .+.. . .+. - -.
T Consensus 281 ~~~~~~df~~-~vDSIsvD~HK~l~~-P~~cgvll~R~~~~~~~~~~~~Yl~---~-------~d~---------t--i~ 337 (470)
T PLN02263 281 KRAPKVTFKK-PIGSVSVSGHKFVGC-PMPCGVQITRMEHINVLSSNVEYLA---S-------RDA---------T--IM 337 (470)
T ss_pred ccccccCCCc-CccEEEECCccccCC-CcCEEEEEEehhhHhhhccChHhhC---C-------CCC---------C--cC
Confidence 123355543 499999999999887 9999999999865443321 1111 0 000 0 13
Q ss_pred CCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeec
Q 037063 403 PESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFD 482 (588)
Q Consensus 403 GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~ 482 (588)
|+.+.... +.+...|..+-..|+.++.++...+++++.+.|.++ ++.++.. +...+|+|..+.
T Consensus 338 gSR~g~~a---l~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~----------g~~~~~~----p~s~~V~f~~p~ 400 (470)
T PLN02263 338 GSRNGHAP---IFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA----------GISAMLN----ELSSTVVFERPK 400 (470)
T ss_pred CCCCcHHH---HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEeC----CCceEEEEecCc
Confidence 34443221 345566776666678888888899999999999984 2333332 346788887443
Q ss_pred CCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHH
Q 037063 483 WNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 483 ~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l 562 (588)
.+. ..+|..+.+- .. .+++.+..-.+.+.|+.|++.|
T Consensus 401 -------~~~-----~~~gW~L~~~-----------------------------~~--~~Hivvmphv~~~~id~fi~DL 437 (470)
T PLN02263 401 -------DEE-----FVRRWQLACQ-----------------------------GN--IAHVVVMPSVTIEKLDYFLKEL 437 (470)
T ss_pred -------hHH-----hhcceEEccC-----------------------------CC--cEEEEEcCCCCHHHHHHHHHHH
Confidence 111 1246655420 11 4666666656889999999999
Q ss_pred HHhhhhhh
Q 037063 563 SRFLDADF 570 (588)
Q Consensus 563 ~~~l~~~~ 570 (588)
++.....|
T Consensus 438 ~~~~~~~~ 445 (470)
T PLN02263 438 VEKRSTWY 445 (470)
T ss_pred HHHHhhhh
Confidence 98776554
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-18 Score=183.54 Aligned_cols=301 Identities=13% Similarity=0.080 Sum_probs=185.8
Q ss_pred HHHHHHHHHHh----CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcC-CCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 182 SKIRKRIMDFM----NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVY-DHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 182 ~~~r~~ia~~l----ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~-e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++|+.+++++ |+..+.++|++|+|+++|+.+++.++ +++||+|++.. .|+. . ...++..|++++.++.
T Consensus 70 ~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~-~----~~~~~~~g~~~~~~~~ 143 (388)
T PRK07337 70 APLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLAL-VERGDEVLMPDPSYPC-N----RHFVAAAEGRPVLVPS 143 (388)
T ss_pred HHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHh-cCCCCEEEEeCCCchh-h----HHHHHHcCCEEEEeec
Confidence 36677777765 54222234999999999999999999 89999976544 4443 2 2344567999999998
Q ss_pred cC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCc-CCCCCCCC
Q 037063 257 AW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATAL-GSKDMDTL 330 (588)
Q Consensus 257 ~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~-~~~d~~~l 330 (588)
+. .++.++.+++++.+. +++++|++++++||||..++.++ | ++|+++|+++|+|.+-. +..+-...
T Consensus 144 ~~~~~~~~~~~~l~~~~~--------~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 215 (388)
T PRK07337 144 GPAERFQLTAADVEAAWG--------ERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPV 215 (388)
T ss_pred CCccCCcCCHHHHHhhcC--------ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCc
Confidence 63 245799999999887 68899999999999999998654 5 77899999999998732 21110111
Q ss_pred CCCCCCCcE-EEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 331 GLSLFKPDF-LICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 331 ~l~~~~~D~-vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
.......++ ++.|++|.||.+..++|++++++++++.+....... ..++..+.+
T Consensus 216 ~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~~~~l~~~l~~~~~~~-------------------------~~~~s~~~q 270 (388)
T PRK07337 216 SALSLGDDVITINSFSKYFNMTGWRLGWLVVPEALVGTFEKLAQNL-------------------------FICASALAQ 270 (388)
T ss_pred ChhhccCCEEEEEechhhcCCchhheeeeecCHHHHHHHHHHHHHh-------------------------ccCCChHHH
Confidence 111112344 567999999853445999999988776664332110 001111111
Q ss_pred hhhHHHHHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEE-eCCCCCCCcccEEEEEeecCC-C
Q 037063 410 VSSKLVECKGLDH--ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRI-YGPKVMFDRGPSLAFNVFDWN-G 485 (588)
Q Consensus 410 ~~~~~al~~aL~~--l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i-~~p~~~~~rg~iv~f~~~~~~-g 485 (588)
.++..+++. ++. +.+..++.++.++.+.+.|+++ | +.+ ..| ..|..+-+.+.... .
T Consensus 271 ----~~~~~~l~~~~~~~--~~~~~~~~~~~r~~~~~~L~~~-------~---~~~~~~p----~~g~f~~~~~~~~~~~ 330 (388)
T PRK07337 271 ----HAALACFEPDTLAI--YERRRAEFKRRRDFIVPALESL-------G---FKVPVMP----DGAFYVYADCRGVAHP 330 (388)
T ss_pred ----HHHHHHhccCchHH--HHHHHHHHHHHHHHHHHHHHhc-------C---CccccCC----CeeEEEEEecccccCC
Confidence 122223321 111 2444555566667777777763 1 221 122 12333334443210 0
Q ss_pred CCcCHHHH-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 486 TRIDPALV-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 486 ~~i~~~~v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
..++..++ .++++++||.+.+|..+. . ..+.+++|++++. +.+++...++.|.+
T Consensus 331 ~~~~~~~~~~~ll~~~gv~v~pg~~f~----------------~-------~~~~~~~Ri~~~~--~~~~l~~~l~rl~~ 385 (388)
T PRK07337 331 AAGDSAALTQAMLHDAGVVLVPGRDFG----------------P-------HAPRDYIRLSYAT--SMSRLEEAVARLGK 385 (388)
T ss_pred CCCCHHHHHHHHHHhCCEEEeCchhhC----------------C-------CCCCCEEEEEecC--CHHHHHHHHHHHHH
Confidence 11344554 466788999999885431 0 0112399999985 57888888887776
Q ss_pred hh
Q 037063 565 FL 566 (588)
Q Consensus 565 ~l 566 (588)
++
T Consensus 386 ~l 387 (388)
T PRK07337 386 LF 387 (388)
T ss_pred Hh
Confidence 54
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-18 Score=186.16 Aligned_cols=303 Identities=14% Similarity=0.107 Sum_probs=191.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+.+.++++++.|.+ + +++++++++|+.++.. + +++||+|++. ..|++ ....+.....+.|++++.++.
T Consensus 132 npt~~aLE~~lA~leg~e---~-ai~~~SG~aAi~~il~-l-l~~GD~VI~~~~~y~~-t~~ll~~~l~~~G~~v~~vd~ 204 (464)
T PLN02509 132 NPTRDALESLLAKLDKAD---R-AFCFTSGMAALSAVTH-L-IKNGEEIVAGDDVYGG-SDRLLSQVVPRSGVVVKRVNT 204 (464)
T ss_pred CHHHHHHHHHHHHHhCCC---E-EEEeCcHHHHHHHHHH-H-hCCCCEEEEcCCchhh-HHHHHHHHHHHCCeEEEEeCC
Confidence 456789999999999863 2 5555667888877664 5 7899997754 44443 333334556778999998864
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
.+.++++++|+ ++|++|++.+++|++|.+.|+++| ++|+++|++|++|+++..|....+++ .
T Consensus 205 ------~d~e~l~~ai~--------~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl~---~ 267 (464)
T PLN02509 205 ------TNLDEVAAAIG--------PQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLE---L 267 (464)
T ss_pred ------CCHHHHHHhCC--------cCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCChhh---c
Confidence 26788988887 789999999999999999999999 99999999999999988874333333 3
Q ss_pred CCcEEEeccCccCCCCCCc--eEEEEEeCcch-hcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhh
Q 037063 336 KPDFLICSFYKIFGENPSG--FGCLFVKKSSA-SVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSS 412 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G--~G~L~v~~~~~-~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~ 412 (588)
++|++++|++|+++. +.+ .|+++++++.+ +.+...... .|+ .+...
T Consensus 268 gaDivv~S~tK~l~G-~gdv~gG~v~~~~~~l~~~~~~~~~~---------------------------~g~-~l~p~-- 316 (464)
T PLN02509 268 GADIVMHSATKFIAG-HSDVMAGVLAVKGEKLAKEVYFLQNS---------------------------EGS-GLAPF-- 316 (464)
T ss_pred CCcEEEecCcccccC-CCccceeEEEeccHHHHHHHHHHHHh---------------------------cCC-CcCHH--
Confidence 489999999997773 444 68888766532 222211100 010 00111
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCC---C---------CCcccEEEEE
Q 037063 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKV---M---------FDRGPSLAFN 479 (588)
Q Consensus 413 ~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~---~---------~~rg~iv~f~ 479 (588)
....++..++. ++...++..+.+.++.+.|++. |.| +|+-|.- + ..-|++++|.
T Consensus 317 --~A~l~lr~L~t--L~~R~~r~~~nA~~la~~L~~~---------p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~ 383 (464)
T PLN02509 317 --DCWLCLRGIKT--MALRIEKQQENARKIAMYLSSH---------PRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFI 383 (464)
T ss_pred --HHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHhcC---------CCccEEECCCCCCCccHHHHHHhCCCCceEEEEE
Confidence 11133333333 2555666677778888888763 444 4554421 0 1237899998
Q ss_pred eecCCCCCcCHHHHHHHHHhCCc---Eecccccc----CcccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCCCC
Q 037063 480 VFDWNGTRIDPALVQKLADRHNI---SLSCGFLQ----NIFFSGEYEQERVRVLETRSGTNETRSGV--SVVTAALGCLT 550 (588)
Q Consensus 480 ~~~~~g~~i~~~~v~~~l~~~gI---~v~~G~~c----~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~~ 550 (588)
+.+ .+...++++...+ .++-|... ++...... ..... ... ..|+ +.||+|+|.
T Consensus 384 ~~~-------~~~~~~f~~~l~l~~~a~slG~~~SLi~~p~~~sh~-~~~~~-~~~-------~~Gi~~~liRlSvGl-- 445 (464)
T PLN02509 384 TGS-------VALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHA-SIPAE-VRE-------ARGLTEDLVRISAGI-- 445 (464)
T ss_pred eCC-------HHHHHHHHHcCCcceEcccCCCCCceeeCCcccccc-cCCHH-HHH-------hcCCCCCeEEEEecc--
Confidence 732 3445566665442 23333211 11100000 00000 011 1333 389999997
Q ss_pred CHHHHHHHHHHHHHhhhh
Q 037063 551 NFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 551 t~eDv~~li~~l~~~l~~ 568 (588)
||++.|++-|.+.|+.
T Consensus 446 --E~~~DLi~Dl~~Al~~ 461 (464)
T PLN02509 446 --EDVDDLISDLDIAFRT 461 (464)
T ss_pred --CCHHHHHHHHHHHHcc
Confidence 8999999998888765
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.6e-19 Score=187.69 Aligned_cols=300 Identities=14% Similarity=0.107 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....+++++|+++.|.+ +.+++ +|+++|+.+++.++ +++||+|++. ..|.+ .+..+...++..|+++..++.
T Consensus 61 p~~~~Le~~lA~~~g~~---~~i~~-~sG~~Ai~~~l~al-l~~Gd~Vl~~~~~y~~-t~~~~~~~~~~~gi~~~~~d~- 133 (388)
T PRK07811 61 PTRTALEEQLAALEGGA---YGRAF-SSGMAATDCLLRAV-LRPGDHIVIPNDAYGG-TFRLIDKVFTRWGVEYTPVDL- 133 (388)
T ss_pred ccHHHHHHHHHHHhCCC---ceEEe-CCHHHHHHHHHHHH-hCCCCEEEEcCCCchH-HHHHHHHhCcCCCeEEEEeCC-
Confidence 34679999999999995 33555 56689999999999 8999997654 44543 333334445567888888765
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFK 336 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~ 336 (588)
.|+++++++++ ++|++|+++.++|++|...|+++| ++|+++|++||+|++...+....++. ..
T Consensus 134 -----~d~e~l~~~i~--------~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~~---~g 197 (388)
T PRK07811 134 -----SDLDAVRAAIT--------PRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPLA---LG 197 (388)
T ss_pred -----CCHHHHHHhcC--------cCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCchh---hC
Confidence 37899999887 689999999999999999999999 99999999999999987763223332 24
Q ss_pred CcEEEeccCccCCCCCCc--eEEEEEeCc-chhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhH
Q 037063 337 PDFLICSFYKIFGENPSG--FGCLFVKKS-SASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSK 413 (588)
Q Consensus 337 ~D~vv~S~~K~~G~~P~G--~G~L~v~~~-~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~ 413 (588)
+|++++|++|++|. |.+ .|+++++++ +.+++....... |. +.+. .
T Consensus 198 aDivv~S~sK~l~g-~~~~~gG~vv~~~~~l~~~~~~~~~~~-g~-------------------------~~s~--~--- 245 (388)
T PRK07811 198 ADVVVHSTTKYIGG-HSDVVGGALVTNDEELDEAFAFLQNGA-GA-------------------------VPGP--F--- 245 (388)
T ss_pred CcEEEecCceeecC-CCCcEEEEEEECCHHHHHHHHHHHHhc-CC-------------------------CCCH--H---
Confidence 89999999998883 443 588888654 434343221110 10 0000 0
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCC------------CCcccEEEEEe
Q 037063 414 LVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVM------------FDRGPSLAFNV 480 (588)
Q Consensus 414 ~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~------------~~rg~iv~f~~ 480 (588)
.+ ..++..++. ++...++..+.+..+.+.|++. |.| +++-|.-. ..-|++++|.+
T Consensus 246 ~a-~l~~~~L~t--l~~R~~~~~~na~~la~~L~~~---------p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~ 313 (388)
T PRK07811 246 DA-YLTLRGLKT--LAVRMDRHSENAEAVAEFLAGH---------PEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRL 313 (388)
T ss_pred HH-HHHHhccCc--HHHHHHHHHHHHHHHHHHHHhC---------CCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEe
Confidence 01 122222322 3444455566677777777763 333 34444321 12478999999
Q ss_pred ecCCCCCcCHHHHHHHHHhCCc---Eeccccc----cCcccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCCCCC
Q 037063 481 FDWNGTRIDPALVQKLADRHNI---SLSCGFL----QNIFFSGEYEQERVRVLETRSGTNETRSGV--SVVTAALGCLTN 551 (588)
Q Consensus 481 ~~~~g~~i~~~~v~~~l~~~gI---~v~~G~~----c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~~t 551 (588)
.+ +.+.+.+++++-.+ ..+-|.. |++.....+. +. ....|+ +.||+|+|.
T Consensus 314 ~~------~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~------~~------~~~~gi~~~liR~svGl--- 372 (388)
T PRK07811 314 AG------GEEAARDFCARTKVFTLAESLGGVESLIEHPSAMTHAS------TA------GSQLEVPDDLVRLSVGI--- 372 (388)
T ss_pred CC------CHHHHHHHHHhCCcceeeccCCCCcceEeCCcccCccc------CC------HhhcCCCCCEEEEEeCC---
Confidence 64 14445666666544 2333321 1111100000 00 001233 389999997
Q ss_pred HHHHHHHHHHHHHhhh
Q 037063 552 FEDTYRLWAFVSRFLD 567 (588)
Q Consensus 552 ~eDv~~li~~l~~~l~ 567 (588)
||++.|++-|.+.|+
T Consensus 373 -E~~~dl~~dl~~al~ 387 (388)
T PRK07811 373 -EDVADLLADLEQALG 387 (388)
T ss_pred -CCHHHHHHHHHHHhh
Confidence 788888888877665
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=186.54 Aligned_cols=169 Identities=15% Similarity=0.110 Sum_probs=129.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHH-HHhcCCEEEEEe
Q 037063 177 ESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIES-SKKRGARVSSAE 255 (588)
Q Consensus 177 ~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~-a~~~G~~v~~v~ 255 (588)
.....+++++++++++|+. .+++++|+++|+.+++.++ +++||+|++....+......+... ++..|+++++++
T Consensus 74 ~~Pt~~~LE~~lA~l~g~~----~~l~~~sG~~Ai~~al~al-~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d 148 (418)
T PLN02242 74 FNPTVLNLGRQMAALEGTE----AAYCTASGMSAISSVLLQL-CSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVD 148 (418)
T ss_pred CChhHHHHHHHHHHHhCCC----eEEEEccHHHHHHHHHHHH-hCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcC
Confidence 3566789999999999984 2678999999999999999 899999876554333232222222 244788888776
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCC-cceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCC
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKK-KRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLS 333 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~-~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~ 333 (588)
.. |+++++++|+ + ++++|++.+++|+||.+.|+++| ++|+++|++||+|.++. +.....+.
T Consensus 149 ~~------d~e~l~~~i~--------~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~-~~~~~~~~-- 211 (418)
T PLN02242 149 IT------DLEAVKKAVV--------PGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFA-PMVLSPAR-- 211 (418)
T ss_pred CC------CHHHHHHhcC--------cCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCC-ccCCCHHH--
Confidence 53 7889999887 5 59999999999999999999999 99999999999999974 32122222
Q ss_pred CCCCcEEEeccCccCCCCCCc---eEEEEEeCcchhcccC
Q 037063 334 LFKPDFLICSFYKIFGENPSG---FGCLFVKKSSASVLSG 370 (588)
Q Consensus 334 ~~~~D~vv~S~~K~~G~~P~G---~G~L~v~~~~~~~l~~ 370 (588)
+.+|+++.|++|.+| +.| .|+++.++++++.+..
T Consensus 212 -~g~divv~S~SK~l~--g~g~~~gG~iv~~~~li~~l~~ 248 (418)
T PLN02242 212 -LGADVVVHSISKFIS--GGADIIAGAVCGPAELVNSMMD 248 (418)
T ss_pred -cCCcEEEEeCccccC--CCCCceEEEEEcCHHHHHHHHH
Confidence 238999999999887 334 5888888877766553
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-18 Score=183.60 Aligned_cols=301 Identities=13% Similarity=0.035 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
++.+.+.+.+.+..|...+..+|++|+|+++|+.+++.++ .++||+|++....+.+. ...++..|++++.++.+.
T Consensus 71 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~ 145 (386)
T PRK07550 71 ELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNH----KMWLDMLGIRPVYLPCDE 145 (386)
T ss_pred HHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcch----HHHHHhcCCEEEEEecCC
Confidence 4444555555555454333345999999999999999999 79999987665544322 234567899999999873
Q ss_pred -CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCCCcC--C--CCCCC
Q 037063 259 -PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYM---WM-SVAAEKGWHVLLDATALG--S--KDMDT 329 (588)
Q Consensus 259 -~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa~~~--~--~d~~~ 329 (588)
.++.++.++++++++ +++++|++.+++||||..+|.+ +| ++|+++|++||+|.+... . .....
T Consensus 146 ~~~~~~~~~~l~~~~~--------~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~ 217 (386)
T PRK07550 146 GPGLLPDPAAAEALIT--------PRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHD 217 (386)
T ss_pred CcCCCCCHHHHHHHhc--------ccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcc
Confidence 245579999999997 6788988999999999999954 56 889999999999998321 1 00011
Q ss_pred C-CC-CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCc
Q 037063 330 L-GL-SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407 (588)
Q Consensus 330 l-~l-~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~ 407 (588)
+ .. +...-.+++.|++|.+|.+..++|+++.+++.++.+....... ..+.+.+
T Consensus 218 ~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~-------------------------~~~~s~~ 272 (386)
T PRK07550 218 LFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFMDTV-------------------------AICAPRI 272 (386)
T ss_pred hhhCCCccccEEEEecchhhccCcccceEeeecCHHHHHHHHHHHhhc-------------------------ccCCCcH
Confidence 1 10 0111246788999988843456999999888776554332110 0011111
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE-EEEeecCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL-AFNVFDWNGT 486 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv-~f~~~~~~g~ 486 (588)
.+ .++..+++.+++. +++..++..+.++++++.|.+. +++.+. + .++.+ -+.+... +
T Consensus 273 ~q----~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~-~-----~g~~~~~~~~~~~-~- 330 (386)
T PRK07550 273 GQ----IAVAWGLPNLADW-RAGNRAEIARRRDAFRAVFARL---------PGWELL-A-----SGAYFAYVRHPFP-D- 330 (386)
T ss_pred HH----HHHHHHhccHHHH-HHHHHHHHHHHHHHHHHHHHhC---------CCceeC-C-----CceEEEEecCCCC-C-
Confidence 11 2333444433332 3455566677777888888763 233332 1 23333 3333320 1
Q ss_pred CcCHHHHH-HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 487 RIDPALVQ-KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 487 ~i~~~~v~-~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
++..++. ++++++||.|.+|.... . .+..+||+|++.. +.++++.+++.|.+|
T Consensus 331 -~~~~~l~~~l~~~~gv~v~pg~~f~----------------~--------~~~~~iRis~~~~-~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 331 -RPSREVARRLAKEAGILCLPGTMFG----------------P--------GQEGYLRLAFANA-DVAGIGELVERLRAF 384 (386)
T ss_pred -CCHHHHHHHHHHhcCEEEeCchhhC----------------C--------CCCCEEEEEeecC-CHHHHHHHHHHHHhh
Confidence 4455554 45678999999884321 0 1123899999753 589999999999876
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-18 Score=190.89 Aligned_cols=298 Identities=15% Similarity=0.104 Sum_probs=190.6
Q ss_pred HHHHHHHHHHh------CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 182 SKIRKRIMDFM------NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 182 ~~~r~~ia~~l------ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.++|+.|++++ ++++++ |++|+|+++++.+++.++ +++||+|+++...+. .+ ...++..|++++.++
T Consensus 188 ~~lReaia~~~~~~~~~~~~~~~--I~it~G~~eal~~~~~~l-~~~Gd~Vli~~P~y~-~y---~~~~~~~g~~~v~~~ 260 (517)
T PRK13355 188 FSARKAIMQYAQLKGLPNVDVDD--IYTGNGVSELINLSMSAL-LDDGDEVLIPSPDYP-LW---TACVNLAGGTAVHYR 260 (517)
T ss_pred HHHHHHHHHHHHhcCCCCCChhH--EEEeCcHHHHHHHHHHHh-CCCCCEEEEcCCCCc-CH---HHHHHHCCCEEEEee
Confidence 47889999988 677665 999999999999999999 899999775544332 22 345567899999998
Q ss_pred ccCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCc--C--CCC
Q 037063 256 FAWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATAL--G--SKD 326 (588)
Q Consensus 256 ~~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~--~--~~d 326 (588)
.+.. ++.+|+++|+++++ ++++++++++++||||..++ +++| ++|+++|++||+|.+-. . +..
T Consensus 261 ~~~~~~~~~d~~~l~~~~~--------~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~ 332 (517)
T PRK13355 261 CDEQSEWYPDIDDIRSKIT--------SRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLE 332 (517)
T ss_pred cCcccCCCCCHHHHHHhcC--------cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCC
Confidence 8633 45789999999887 78999999999999999999 5556 88999999999999832 1 110
Q ss_pred CCCCCCCCCCCc---EEEeccCccCCCCCCceEEEEEe--Ccchh----cccCCCCCCCceEeeecCCCccccccccccc
Q 037063 327 MDTLGLSLFKPD---FLICSFYKIFGENPSGFGCLFVK--KSSAS----VLSGSTSSVSTIMGIEPSFSEIIELETLDES 397 (588)
Q Consensus 327 ~~~l~l~~~~~D---~vv~S~~K~~G~~P~G~G~L~v~--~~~~~----~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~ 397 (588)
..++ .....| +++.|+.|.++.+..++|++++. +++++ .+.....-
T Consensus 333 ~~s~--~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~~----------------------- 387 (517)
T PRK13355 333 HTSI--ASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLANM----------------------- 387 (517)
T ss_pred cccH--HHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHHHhcC-----------------------
Confidence 1111 011123 33479999888544569999965 33222 11100000
Q ss_pred ccccCCCCCccchhhHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 398 SQSKFPESSISGVSSKLVECKGLDH---ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 398 ~f~e~GT~~~~~~~~~~al~~aL~~---l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
..+...+.+ .++..+|+. +... +... ++..+.++++.+.|.++ ++++++.| .|+
T Consensus 388 ---~~~~~~~~q----~a~~~aL~~~~~~~~~-~~~~-~~~~~~r~~l~~~L~~~---------~g~~~~~p-----~g~ 444 (517)
T PRK13355 388 ---RLCSNVPAQ----SIVQTALGGHQSVKDY-LVPG-GRVYEQRELVYNALNAI---------PGISAVKP-----KAA 444 (517)
T ss_pred ---cCCcChHHH----HHHHHHhcCCccHHHH-HHHH-HHHHHHHHHHHHHHhcC---------CCcccCCC-----Cee
Confidence 001111111 223344421 1111 1221 23334467788888764 55666543 466
Q ss_pred EEEE-EeecCC-CCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCH
Q 037063 475 SLAF-NVFDWN-GTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNF 552 (588)
Q Consensus 475 iv~f-~~~~~~-g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~ 552 (588)
++.| .+.... +..-+.+.+.++|.++||.+..|..+.. .+.++||+|+. .+.
T Consensus 445 fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~------------------------~~~~~~Ris~~--~~~ 498 (517)
T PRK13355 445 FYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNW------------------------DKPDHFRVVYL--PRL 498 (517)
T ss_pred eEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCC------------------------CCcCEEEEEeC--CCH
Confidence 6655 343210 0001234567889999999998854310 12239999984 688
Q ss_pred HHHHHHHHHHHHhhhh
Q 037063 553 EDTYRLWAFVSRFLDA 568 (588)
Q Consensus 553 eDv~~li~~l~~~l~~ 568 (588)
++++..++.|.++++.
T Consensus 499 ~~l~~a~~rl~~~~~~ 514 (517)
T PRK13355 499 EDLEDAMDRLADFFSY 514 (517)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988763
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=186.33 Aligned_cols=299 Identities=12% Similarity=0.050 Sum_probs=189.8
Q ss_pred HHHHHHHHHHhC------------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCC
Q 037063 182 SKIRKRIMDFMN------------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGA 249 (588)
Q Consensus 182 ~~~r~~ia~~lg------------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~ 249 (588)
.++|+.|+++++ ++++ +|++|+|+++|+.+++.++ .++||+|++....+... ...++..|+
T Consensus 78 ~~Lr~aia~~~~~~~~~~~~~~~~~~~~--~i~it~G~~~al~~~~~~~-~~~gd~vlv~~P~y~~~----~~~~~~~g~ 150 (412)
T PTZ00433 78 PEAREAVATYWRNSFVHKESLKSTIKKD--NVVLCSGVSHAILMALTAL-CDEGDNILVPAPGFPHY----ETVCKAYGI 150 (412)
T ss_pred HHHHHHHHHHHHhhccccccccCCCChh--hEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCcccH----HHHHHHcCC
Confidence 367888888775 4454 4999999999999999999 89999977654433312 345677899
Q ss_pred EEEEEeccC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC-
Q 037063 250 RVSSAEFAW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG- 323 (588)
Q Consensus 250 ~v~~v~~~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~- 323 (588)
+++.++.+. .++.+++++|++.+. +++++|++++++||||..++.++ | ++|+++|++||+|.+..-
T Consensus 151 ~~~~i~~~~~~~~~~d~~~l~~~~~--------~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~ 222 (412)
T PTZ00433 151 EMRFYNCRPEKDWEADLDEIRRLVD--------DRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGM 222 (412)
T ss_pred EEEEEecCccccCcCCHHHHHHHhc--------cCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 999999863 245789999998887 67899999999999999998655 5 778999999999998431
Q ss_pred ---CCCCCC-CCCCCCCCcEEEeccCccCCCCCCceEEEEEe------CcchhcccCCCCCCCceEeeecCCCccccccc
Q 037063 324 ---SKDMDT-LGLSLFKPDFLICSFYKIFGENPSGFGCLFVK------KSSASVLSGSTSSVSTIMGIEPSFSEIIELET 393 (588)
Q Consensus 324 ---~~d~~~-l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~------~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~ 393 (588)
+..... ..+.....-+++.||.|.||.+..++|++++. +++++.+......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~------------------- 283 (412)
T PTZ00433 223 VFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGML------------------- 283 (412)
T ss_pred ccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhc-------------------
Confidence 100011 11211112367889999987656779999972 2233333221100
Q ss_pred ccccccccCCCCCccchhhHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc
Q 037063 394 LDESSQSKFPESSISGVSSKLVECKGLDH-ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR 472 (588)
Q Consensus 394 ~~~~~f~e~GT~~~~~~~~~~al~~aL~~-l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r 472 (588)
..+++.+.+ .++..++.. .+.. ++++.++++...+++.+.|.++ .++.++.| .
T Consensus 284 -------~~~~~~~~q----~a~~~~l~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~---------~~~~~~~p-----~ 337 (412)
T PTZ00433 284 -------VCGPCSVVQ----AALGEALLNTPQEH-LEQIVAKLEEGAMVLYNHIGEC---------IGLSPTMP-----R 337 (412)
T ss_pred -------cCCCChHHH----HHHHHHHhcCcHHH-HHHHHHHHHHHHHHHHHHHhcC---------CCCcccCC-----C
Confidence 001111111 222233321 1111 4666667777777788887763 23443333 3
Q ss_pred cc-EEEEEeecCC-CCCcCHHH-HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC
Q 037063 473 GP-SLAFNVFDWN-GTRIDPAL-VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL 549 (588)
Q Consensus 473 g~-iv~f~~~~~~-g~~i~~~~-v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~ 549 (588)
++ .+-+.+.... ....+... +.++++++||.++.|..+. .. +++|++++.
T Consensus 338 gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~------------------------~~--~~iRis~~~- 390 (412)
T PTZ00433 338 GSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFH------------------------MP--GFTRLTISR- 390 (412)
T ss_pred eeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccC------------------------CC--CeEEEEecC-
Confidence 33 3333443210 00112334 4555667899999874331 01 289999985
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q 037063 550 TNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 550 ~t~eDv~~li~~l~~~l~~ 568 (588)
..+++++.++.|.++++.
T Consensus 391 -~~e~l~~al~~l~~~~~~ 408 (412)
T PTZ00433 391 -PVEVLREAVERIKAFCER 408 (412)
T ss_pred -CHHHHHHHHHHHHHHHHH
Confidence 488899999999887753
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-18 Score=185.33 Aligned_cols=300 Identities=14% Similarity=0.055 Sum_probs=189.7
Q ss_pred HHHHHHHHHHhC-----CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 182 SKIRKRIMDFMN-----ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 182 ~~~r~~ia~~lg-----a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++|+.|+++++ +++++ |++|+|+++|+.+++.++ .++||+|++....+. .....++..|++++.+++
T Consensus 76 ~~lr~aia~~~~~~~~~~~~~~--i~~t~G~~~al~~~~~~l-~~~gd~v~i~~P~y~----~~~~~~~~~g~~v~~~~~ 148 (401)
T TIGR01264 76 LSAREAIASYYHNPDGPIEADD--VVLCSGCSHAIEMCIAAL-ANAGQNILVPRPGFP----LYETLAESMGIEVKLYNL 148 (401)
T ss_pred HHHHHHHHHHHhhcCCCCCHHH--EEECcChHHHHHHHHHHh-CCCCCEEEEeCCCCh----hHHHHHHHcCCEEEEeec
Confidence 468888888887 55554 999999999999999999 789999765544332 124566788999999988
Q ss_pred cCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCc--C--CCCC
Q 037063 257 AWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATAL--G--SKDM 327 (588)
Q Consensus 257 ~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~--~--~~d~ 327 (588)
+.. ++.+++++|++.++ ++++++++++++||||..++.++ | ++|+++|++||+|.+.. . +...
T Consensus 149 ~~~~~~~~d~~~l~~~~~--------~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~ 220 (401)
T TIGR01264 149 LPDKSWEIDLKQLESLID--------EKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATF 220 (401)
T ss_pred CCccCCCCCHHHHHHHhc--------cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCccc
Confidence 532 46799999998887 57899999999999999998554 5 77899999999999832 1 1111
Q ss_pred CCC-CCCCCCCcEEEeccCccCCCCCCceEEEEEeCc------chhcccCCCCCCCceEeeecCCCcccccccccccccc
Q 037063 328 DTL-GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKS------SASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS 400 (588)
Q Consensus 328 ~~l-~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~------~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~ 400 (588)
.++ .+.....-+++.||.|.||.+..++|++++.+. .++.+......
T Consensus 221 ~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~-------------------------- 274 (401)
T TIGR01264 221 EPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQR-------------------------- 274 (401)
T ss_pred ccHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHHhhc--------------------------
Confidence 111 111111136788999988865567999998742 22222111000
Q ss_pred cCCCCCccchhhHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEE
Q 037063 401 KFPESSISGVSSKLVECKGLDH-ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFN 479 (588)
Q Consensus 401 e~GT~~~~~~~~~~al~~aL~~-l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~ 479 (588)
..+...+.+ .++..+|+. .+.. +++..++.+..++++.+.|.++ +++.+..| ..|..+-+.
T Consensus 275 ~~~~~~~~q----~a~~~~l~~~~~~~-l~~~~~~~~~~r~~l~~~L~~~---------~~~~~~~p----~~g~f~~~~ 336 (401)
T TIGR01264 275 ILGPCTIVQ----GALPSILLRTPQEY-FDGTLSVLESNAMLCYGALAAV---------PGLRPVMP----SGAMYMMVG 336 (401)
T ss_pred cCCCCcHHH----HHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHhC---------CCCcccCC----CeeeEEEEE
Confidence 001111111 222333321 1111 4555666666677788888764 33443333 223344444
Q ss_pred eecC-CCCCcCHHHH-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHH
Q 037063 480 VFDW-NGTRIDPALV-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYR 557 (588)
Q Consensus 480 ~~~~-~g~~i~~~~v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~ 557 (588)
+... .....+...+ .++++++||.++.|.... ..+ ++|+|++. ..++++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~------------------------~~~--~iRis~~~--~~~~l~~ 388 (401)
T TIGR01264 337 IEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFE------------------------YPG--FFRVVLTV--PVVMMEE 388 (401)
T ss_pred ecccccCCCCCHHHHHHHHHHhCCEEEeCchhcC------------------------CCC--eEEEEEcC--CHHHHHH
Confidence 4321 0011233444 555678999998874320 022 89999984 5799999
Q ss_pred HHHHHHHhhhh
Q 037063 558 LWAFVSRFLDA 568 (588)
Q Consensus 558 li~~l~~~l~~ 568 (588)
.++.|.+++++
T Consensus 389 ~l~rl~~~~~~ 399 (401)
T TIGR01264 389 ACSRIQEFCER 399 (401)
T ss_pred HHHHHHHHHhc
Confidence 99999888764
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=184.37 Aligned_cols=166 Identities=13% Similarity=0.021 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+.++++|+.+-+.. . .++++++++|+..++.++ +++||+|++ ...|++ ....+...+++.|+++.+++.
T Consensus 63 nPt~~~Le~~la~le~~~---~-~v~~sSG~aAi~~~l~al-l~~GD~Vlv~~~~Y~~-~~~l~~~~l~~~Gi~v~~vd~ 136 (395)
T PRK05967 63 TPTTDALCKAIDALEGSA---G-TILVPSGLAAVTVPFLGF-LSPGDHALIVDSVYYP-TRHFCDTMLKRLGVEVEYYDP 136 (395)
T ss_pred ChHHHHHHHHHHHHhCCC---C-EEEECcHHHHHHHHHHHh-cCCCCEEEEccCCcHH-HHHHHHHHHHhcCeEEEEeCC
Confidence 455678899999887653 2 456666899999999999 999999765 445554 444445677889999999865
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ +.++++++++ ++|++|++.+++|++|.+.|+++| ++|+++|+++++|++...|....+++ +
T Consensus 137 ~------~~e~l~~al~--------~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~pl~---~ 199 (395)
T PRK05967 137 E------IGAGIAKLMR--------PNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLD---F 199 (395)
T ss_pred C------CHHHHHHhcC--------cCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCceecChhH---c
Confidence 3 3477888887 789999999999999999999999 99999999999999988885445544 3
Q ss_pred CCcEEEeccCccCCCCCCc---eEEEEEeCcchhcc
Q 037063 336 KPDFLICSFYKIFGENPSG---FGCLFVKKSSASVL 368 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G---~G~L~v~~~~~~~l 368 (588)
++|+++.|..|+++ +.| .|++..+++.++++
T Consensus 200 GaDivv~S~tKy~~--Gh~d~~~G~v~~~~~~~~~l 233 (395)
T PRK05967 200 GVDISIHAATKYPS--GHSDILLGTVSANEKCWPQL 233 (395)
T ss_pred CCCEEEEecccccC--CCCCeeEEEEEcCHHHHHHH
Confidence 49999999999876 223 67666565544444
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-18 Score=183.16 Aligned_cols=160 Identities=16% Similarity=0.065 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+.++++++++.|++ + .++++|++.|+.+++. + +++||+|++ ...|++ ....+...++..|+++++++.
T Consensus 49 ~p~~~~Le~~la~l~g~~---~-al~~~SG~~Al~~~l~-~-l~pGd~Vi~~~~~y~~-t~~~~~~~~~~~gi~v~~vd~ 121 (380)
T PRK06176 49 NPTRFALEELIADLEGGV---K-GFAFASGLAGIHAVFS-L-FQSGDHVLLGDDVYGG-TFRLFDKVLVKNGLSCTIIDT 121 (380)
T ss_pred ChhHHHHHHHHHHHhCCC---C-EEEECCHHHHHHHHHH-H-cCCCCEEEEcCCChhH-HHHHHHHHHHhcCeEEEEcCC
Confidence 455679999999999974 2 4555666789987775 5 689999765 445654 344445667888999998865
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
. ++++++++++ +++++|++.+++|++|...|+++| ++|+++|+++++|+++..+....+++ +
T Consensus 122 ~------d~e~l~~ai~--------~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p~~---~ 184 (380)
T PRK06176 122 S------DLSQIKKAIK--------PNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLL---L 184 (380)
T ss_pred C------CHHHHHHhcC--------cCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccCCccc---c
Confidence 2 7889998887 789999999999999999999999 99999999999999987663223332 3
Q ss_pred CCcEEEeccCccCCCCCCc--eEEEEEeC
Q 037063 336 KPDFLICSFYKIFGENPSG--FGCLFVKK 362 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G--~G~L~v~~ 362 (588)
.+|++++|++|++|. |.. .|+++.++
T Consensus 185 gaDivv~S~tK~l~g-~~d~~gG~vv~~~ 212 (380)
T PRK06176 185 GADIVVHSGTKYLGG-HSDVVAGLVTTNN 212 (380)
T ss_pred CCCEEEecCceeccC-CccceeeEEEecH
Confidence 599999999998873 432 56666654
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-18 Score=181.96 Aligned_cols=301 Identities=16% Similarity=0.091 Sum_probs=188.2
Q ss_pred HHHHHHHHHHh------CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEE
Q 037063 182 SKIRKRIMDFM------NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 182 ~~~r~~ia~~l------ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
.++|+.+++++ ++++++ |++|+|+++++.+++.++ +++||+|++. ..|+. . ...++..|++++.+
T Consensus 75 ~~lr~~ia~~~~~~~~~~~~~~~--i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~p~y~~-~----~~~~~~~g~~~v~~ 146 (404)
T PRK09265 75 FSARKAIMQYYQQKGIPDVDVDD--IYIGNGVSELIVMAMQAL-LNNGDEVLVPAPDYPL-W----TAAVSLSGGKPVHY 146 (404)
T ss_pred HHHHHHHHHHHhccCCCCCCccc--EEEeCChHHHHHHHHHHh-CCCCCEEEEeCCCCcC-h----HHHHHHcCCEEEEE
Confidence 37888898887 677765 999999999999999998 8999996654 44442 2 34456679999888
Q ss_pred eccCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcC----CC
Q 037063 255 EFAWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALG----SK 325 (588)
Q Consensus 255 ~~~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~----~~ 325 (588)
+.+.. ++.++.+++++.+. +++++|++++++||||..+| +++| ++|+++|+++|+|.+..- +.
T Consensus 147 ~~~~~~~~~~d~~~l~~~~~--------~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~ 218 (404)
T PRK09265 147 LCDEEAGWFPDLDDIRSKIT--------PRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGA 218 (404)
T ss_pred ecccccCCCCCHHHHHHhcc--------ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCC
Confidence 87632 45689999999887 67999999999999999999 6667 889999999999988321 10
Q ss_pred CCCCC-CCCCCCCcEEEeccCccCCCCCCceEEEEEe--Ccc----hhcccCCCCCCCceEeeecCCCcccccccccccc
Q 037063 326 DMDTL-GLSLFKPDFLICSFYKIFGENPSGFGCLFVK--KSS----ASVLSGSTSSVSTIMGIEPSFSEIIELETLDESS 398 (588)
Q Consensus 326 d~~~l-~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~--~~~----~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~ 398 (588)
...++ .+.....-+++.|+.|.+|.+...+|+++.. +.. ++.+......
T Consensus 219 ~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~------------------------ 274 (404)
T PRK09265 219 VHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDMLASM------------------------ 274 (404)
T ss_pred CcCCHHHcCCCceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHHHhcc------------------------
Confidence 01111 1111001245679999997544568999974 222 2212100000
Q ss_pred cccCCCCCccchhhHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE
Q 037063 399 QSKFPESSISGVSSKLVECKGLDHADALG-LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA 477 (588)
Q Consensus 399 f~e~GT~~~~~~~~~~al~~aL~~l~~~G-~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~ 477 (588)
..++..+.+ .++..+|...+... +.+..++..+.++++.+.|+++ +++++..| .++...
T Consensus 275 --~~~~~~~~q----~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~---------~~~~~~~p-----~~g~~l 334 (404)
T PRK09265 275 --RLCANVPAQ----HAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAI---------PGVSCVKP-----KGALYA 334 (404)
T ss_pred --ccCCCcHHH----HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC---------CCCcccCC-----CcceEE
Confidence 001111111 22334442111110 1111234555567777777663 34555443 344444
Q ss_pred E-EeecCC-CCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHH
Q 037063 478 F-NVFDWN-GTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDT 555 (588)
Q Consensus 478 f-~~~~~~-g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv 555 (588)
| .+.+.. +..-+.+.+.+++.++||.+..|..+.. .+..++|++++ .+.|++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~------------------------~~~~~~Ri~~~--~~~e~l 388 (404)
T PRK09265 335 FPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNW------------------------PEPDHFRIVTL--PRVDDL 388 (404)
T ss_pred EEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCC------------------------CCCCeEEEEeC--CCHHHH
Confidence 3 443210 1111234577889999999988843310 11228999985 688999
Q ss_pred HHHHHHHHHhhhh
Q 037063 556 YRLWAFVSRFLDA 568 (588)
Q Consensus 556 ~~li~~l~~~l~~ 568 (588)
+..++.|+++++.
T Consensus 389 ~~~l~rl~~~l~~ 401 (404)
T PRK09265 389 EEAIGRIGRFLSG 401 (404)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-18 Score=183.07 Aligned_cols=295 Identities=16% Similarity=0.173 Sum_probs=189.7
Q ss_pred HHHHHHHHHh----C--CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 183 KIRKRIMDFM----N--ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 183 ~~r~~ia~~l----g--a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++|+.|++++ | ++++ +|++|+|+++|+.+++.++ +++||+|++....+... ...++..|++++.++.
T Consensus 70 ~lr~~ia~~~~~~~~~~~~~~--~i~it~G~~~al~~~~~~~-~~~gd~vlv~~p~y~~~----~~~~~~~g~~~~~~~~ 142 (384)
T PRK06348 70 ELIEEIIKYYSKNYDLSFKRN--EIMATVGACHGMYLALQSI-LDPGDEVIIHEPYFTPY----KDQIEMVGGKPIILET 142 (384)
T ss_pred HHHHHHHHHHHHHhCCCCChh--hEEEcCChHHHHHHHHHHh-cCCCCEEEEeCCCCcch----HHHHHHcCCEEEEecC
Confidence 4666666665 3 5554 4999999999999999999 89999977655544322 3455667999998886
Q ss_pred cC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC---CCCCC
Q 037063 257 AW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG---SKDMD 328 (588)
Q Consensus 257 ~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~---~~d~~ 328 (588)
.. .+..+++++|++++. +++++|+++.++||||..++.++ | ++|+++|+++|+|.+..- .....
T Consensus 143 ~~~~~~~~d~~~l~~~~~--------~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~ 214 (384)
T PRK06348 143 YEEDGFQINVKKLEALIT--------SKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFV 214 (384)
T ss_pred CcCcCCcCCHHHHHHhhC--------cCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCcc
Confidence 42 334589999999887 67899999999999999999665 5 778999999999998321 10011
Q ss_pred CC-CCCC-CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 329 TL-GLSL-FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 329 ~l-~l~~-~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
++ .+.. ....+++.|+.|.+|.+..++|++++++++++.+....... ..+.+.
T Consensus 215 ~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~~~~~~~~~~-------------------------~~~~~~ 269 (384)
T PRK06348 215 PMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYIIETAKIINEGI-------------------------CFSAPT 269 (384)
T ss_pred chhhcCCCcCcEEEEecchhccCCccccceeeecCHHHHHHHHHHHHhc-------------------------cCCCCH
Confidence 11 1111 12457888999998854567999999887766554322110 000111
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE-EEeecCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA-FNVFDWNG 485 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~-f~~~~~~g 485 (588)
+.+ .++..+|+..++. ++++.+..+..++++.+.|..+ ++++++.| .++++. +.+++. +
T Consensus 270 ~~q----~~~~~~l~~~~~~-~~~~~~~~~~r~~~~~~~L~~~---------~~~~~~~p-----~gg~~~~~~~~~~-~ 329 (384)
T PRK06348 270 ISQ----RAAIYALKHRDTI-VPLIKEEFQKRLEYAYKRIESI---------PNLSLHPP-----KGSIYAFINIKKT-G 329 (384)
T ss_pred HHH----HHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHhcC---------CCceeccC-----CeeEEEEEecccC-C
Confidence 111 2233444332222 3455556666677777877763 44555543 345443 344321 1
Q ss_pred CCcCHHHHHH-HHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 486 TRIDPALVQK-LADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 486 ~~i~~~~v~~-~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
++...+.. ++++.||.+.+|.... . .+..+||+|++ .+.++++..++.|++
T Consensus 330 --~~~~~l~~~l~~~~gv~v~pg~~f~----------------~--------~~~~~iRi~~~--~~~~~l~~al~~l~~ 381 (384)
T PRK06348 330 --LSSVEFCEKLLKEAHVLVIPGKAFG----------------E--------SGEGYIRLACT--VGIEVLEEAFNRIEK 381 (384)
T ss_pred --CCHHHHHHHHHHhCCEEEcCchhhc----------------c--------CCCCeEEEEec--CCHHHHHHHHHHHHh
Confidence 34555554 5577899999884331 0 12238999986 477888888887765
Q ss_pred h
Q 037063 565 F 565 (588)
Q Consensus 565 ~ 565 (588)
+
T Consensus 382 ~ 382 (384)
T PRK06348 382 M 382 (384)
T ss_pred h
Confidence 3
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-18 Score=181.76 Aligned_cols=167 Identities=13% Similarity=0.067 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.....++++.++++.|++ + .+++++++.++.++. .+ +++||+|++ ...|.+ .+..+.+.++..|++++.++.
T Consensus 49 ~p~~~~Le~~lA~l~g~~---~-~~~~~sG~aai~~~~-~~-l~~Gd~Viv~~~~y~~-~~~~~~~~~~~~G~~v~~v~~ 121 (377)
T PRK07671 49 NPTRAALEELIAVLEGGH---A-GFAFGSGMAAITAVM-ML-FSSGDHVILTDDVYGG-TYRVMTKVLNRFGIEHTFVDT 121 (377)
T ss_pred ChHHHHHHHHHHHHhCCC---c-eEEeCCHHHHHHHHH-HH-hCCCCEEEECCCccch-HHHHHHHHHhcCCeEEEEECC
Confidence 556789999999999984 2 345666677887765 45 789999764 444543 333335566778999999874
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
.|.++++++|+ ++|++|++++++|++|...|+++| ++|+++|+++++|++...+....+++ +
T Consensus 122 ------~d~~~l~~ai~--------~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~p~~---~ 184 (377)
T PRK07671 122 ------SNLEEVEEAIR--------PNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPIS---L 184 (377)
T ss_pred ------CCHHHHHHhcC--------CCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCChhh---h
Confidence 27889999987 789999999999999999999999 99999999999999976653223332 3
Q ss_pred CCcEEEeccCccCCCCCCc--eEEEEEeC-cchhccc
Q 037063 336 KPDFLICSFYKIFGENPSG--FGCLFVKK-SSASVLS 369 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G--~G~L~v~~-~~~~~l~ 369 (588)
++|+++.|++|++|. |.+ .|++++++ ++++++.
T Consensus 185 g~Divv~S~sK~l~G-~~~~~~G~~v~~~~~l~~~~~ 220 (377)
T PRK07671 185 GADIVLHSATKYLGG-HSDVVAGLVVVNSPELAEDLH 220 (377)
T ss_pred CCeEEEecCcccccC-CccceeEEEEeCcHHHHHHHH
Confidence 489999999998873 543 46666654 4444443
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-18 Score=183.12 Aligned_cols=301 Identities=11% Similarity=0.049 Sum_probs=192.2
Q ss_pred HHHHHHHHHHhC------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 182 SKIRKRIMDFMN------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 182 ~~~r~~ia~~lg------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.++|+.|+++++ ++++ +|++|+|+++|+.+++..+ .++||+|+++...+.. + ...+...|++++.++
T Consensus 97 ~~lr~aia~~~~~~~~~~~~~~--~v~it~G~~~al~l~~~~l-~~~Gd~Vlv~~P~y~~-y---~~~~~~~g~~~~~~~ 169 (430)
T PLN00145 97 LPARRAIAEYLSRDLPYELSTD--DIYLTAGCAQAIEIIMSVL-AQPGANILLPRPGYPL-Y---EARAVFSGLEVRHFD 169 (430)
T ss_pred HHHHHHHHHHHhhccCCCCChh--hEEEeCCHHHHHHHHHHHh-cCCCCEEEEcCCCCcc-H---HHHHHHcCCEEEEee
Confidence 478888888874 3444 4999999999999999999 7999997765444331 2 234566799999998
Q ss_pred ccC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCH---HHH-HHHHHcCcEEEEeCCCc--C--CCC
Q 037063 256 FAW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSY---MWM-SVAAEKGWHVLLDATAL--G--SKD 326 (588)
Q Consensus 256 ~~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl---~~I-~~a~~~g~~vvvDaa~~--~--~~d 326 (588)
+.. .++.+|.++|+++++ ++++++++++++||||..+|. ++| ++|+++|++||+|.+-. . ...
T Consensus 170 ~~~~~~~~~d~~~l~~~~~--------~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~ 241 (430)
T PLN00145 170 LLPERGWEVDLEGVEALAD--------ENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKP 241 (430)
T ss_pred CCcccCCcCCHHHHHHHhC--------cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCC
Confidence 742 346799999999887 789999999999999999994 456 77999999999999832 1 111
Q ss_pred CCCC-CCCCCCCcEEEeccCccCCCCCCceEEEEEe--Ccchhc------ccCCCCCCCceEeeecCCCccccccccccc
Q 037063 327 MDTL-GLSLFKPDFLICSFYKIFGENPSGFGCLFVK--KSSASV------LSGSTSSVSTIMGIEPSFSEIIELETLDES 397 (588)
Q Consensus 327 ~~~l-~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~--~~~~~~------l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~ 397 (588)
..++ .++....-+++.|+.|.|+.+..++|++++. +.+++. ++... . .
T Consensus 242 ~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~-~---~------------------- 298 (430)
T PLN00145 242 FVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYL-N---I------------------- 298 (430)
T ss_pred ccchhhhcccCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHh-c---c-------------------
Confidence 1111 1122224578889999887656779999984 233221 11100 0 0
Q ss_pred ccccCCCCCccchhhHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE
Q 037063 398 SQSKFPESSISGVSSKLVECKGLDH-ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL 476 (588)
Q Consensus 398 ~f~e~GT~~~~~~~~~~al~~aL~~-l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv 476 (588)
..+++.+.+ .++..+|+. .+.. +++..++.+..++.+++.|+.+ +++..... ..|+..
T Consensus 299 ---~~~~~~~~Q----~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~---------~g~~~~~~----P~ga~y 357 (430)
T PLN00145 299 ---STDPATFVQ----GAIPQIIANTKEEF-FTKTLGLLKETADICYEKIKEI---------KCITCPHK----PEGSMF 357 (430)
T ss_pred ---cCCCCHHHH----HHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHHHHhcC---------CCCCCCcC----CCeeeE
Confidence 011112222 223334432 1111 4566667777788888888763 34433211 234443
Q ss_pred EE-EeecC--CCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHH
Q 037063 477 AF-NVFDW--NGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFE 553 (588)
Q Consensus 477 ~f-~~~~~--~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~e 553 (588)
.+ .+... .+...+.+.+.+++++.||.+.+|.... ..+++|||++. ..+
T Consensus 358 ~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg--------------------------~~~~lRis~~~--~~~ 409 (430)
T PLN00145 358 VMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALG--------------------------MKNWLRITFAI--DPP 409 (430)
T ss_pred EEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccC--------------------------CCCeEEEEeCC--CHH
Confidence 33 33211 1111123455688889999999885320 11299999983 788
Q ss_pred HHHHHHHHHHHhhhhh
Q 037063 554 DTYRLWAFVSRFLDAD 569 (588)
Q Consensus 554 Dv~~li~~l~~~l~~~ 569 (588)
+++..++.|++|+...
T Consensus 410 ~l~~al~rl~~~~~~~ 425 (430)
T PLN00145 410 SLEDGLERLKSFCLRH 425 (430)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8999998888887654
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-18 Score=184.80 Aligned_cols=307 Identities=14% Similarity=0.091 Sum_probs=193.2
Q ss_pred HHHHHHHHHHhC------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 182 SKIRKRIMDFMN------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 182 ~~~r~~ia~~lg------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.++|+.||++++ +++++ |++|+|+++|+.+++.++ +++||+|++....+. .+ ...++..|++++.++
T Consensus 111 ~~lR~aiA~~~~~~~~~~~~~~~--I~it~G~~~al~~~~~~l-~~pGd~Vlv~~P~y~-~y---~~~~~~~g~~~~~~~ 183 (462)
T PLN02187 111 LPARRAVADYMNRDLPHKLTPED--IFLTAGCNQGIEIVFESL-ARPNANILLPRPGFP-HY---DARAAYSGLEVRKFD 183 (462)
T ss_pred HHHHHHHHHHHHHhcCCCCCccc--EEEeCCHHHHHHHHHHHh-cCCCCEEEEeCCCCc-cH---HHHHHHcCCEEEEEe
Confidence 468888888873 56554 999999999999999999 899999775544333 12 345577899999998
Q ss_pred ccC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC----CCC
Q 037063 256 FAW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG----SKD 326 (588)
Q Consensus 256 ~~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~----~~d 326 (588)
+.. .+..+|.++|+++++ ++++++++++++||||..++.++ | ++|+++|++||+|.+..- +..
T Consensus 184 l~~~~~~~~d~~~l~~~~~--------~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~ 255 (462)
T PLN02187 184 LLPEKEWEIDLEGIEAIAD--------ENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNP 255 (462)
T ss_pred CccccCCccCHHHHHHhcC--------CCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCC
Confidence 842 356799999998887 68999999999999999999554 5 778999999999998321 110
Q ss_pred CCCC-CCCCCCCcEEEeccCccCCCCCCceEEEEEeC-c-c---hhcccCCCCCCCceEeeecCCCcccccccccccccc
Q 037063 327 MDTL-GLSLFKPDFLICSFYKIFGENPSGFGCLFVKK-S-S---ASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS 400 (588)
Q Consensus 327 ~~~l-~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~-~-~---~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~ 400 (588)
..++ .+.....-+++.|+.|.|+.+..++|++++.+ + . ++.+....... +.
T Consensus 256 ~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~-~~---------------------- 312 (462)
T PLN02187 256 FVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNL-DV---------------------- 312 (462)
T ss_pred ceeHHHhccCCcEEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhc-cc----------------------
Confidence 1111 11111124677899999887667799999843 2 2 12222111000 00
Q ss_pred cCCCCCccchhhHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE-EEE
Q 037063 401 KFPESSISGVSSKLVECKGLDH-ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS-LAF 478 (588)
Q Consensus 401 e~GT~~~~~~~~~~al~~aL~~-l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i-v~f 478 (588)
-.+...+.+ .++..+|+. .... ++++.+.+++.++++.+.|.++ +.+..+.. ..++. +.+
T Consensus 313 ~~~~s~~~Q----~a~~~~L~~~~~~~-l~~~~~~l~~~r~~l~~~L~~~---------~~~~~~~~----P~gg~fl~~ 374 (462)
T PLN02187 313 TPDPATIIQ----AALPAILEKADKNF-FAKKNKILKHNVDLVCDRLKDI---------PCVVCPKK----PESCTYLLT 374 (462)
T ss_pred cCCCCHHHH----HHHHHHHhcCcHHH-HHHHHHHHHHHHHHHHHHHhhC---------CCCcCCCC----CCEeEEEEe
Confidence 001111111 233344432 1111 4556666677777888888764 22211111 22333 333
Q ss_pred EeecCCCCCc-CH-HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHH
Q 037063 479 NVFDWNGTRI-DP-ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTY 556 (588)
Q Consensus 479 ~~~~~~g~~i-~~-~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~ 556 (588)
.+.......+ +. +.+.+++.++||.+++|.... ..++|||+++. ..+.++
T Consensus 375 ~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg--------------------------~~~~iRis~~~--~~e~l~ 426 (462)
T PLN02187 375 KLELSLMDNIKDDIDFCVKLAREENLVFLPGDALG--------------------------LKNWMRITIGV--EAHMLE 426 (462)
T ss_pred ecChhhCCCCCCHHHHHHHHHhhCCEEEECccccC--------------------------CCCeEEEEeCC--CHHHHH
Confidence 3421100002 23 445778899999999884320 11289999984 688889
Q ss_pred HHHHHHHHhhhhhhcc
Q 037063 557 RLWAFVSRFLDADFVE 572 (588)
Q Consensus 557 ~li~~l~~~l~~~~~~ 572 (588)
..++.|.++++.....
T Consensus 427 ~al~rL~~~l~~~~~~ 442 (462)
T PLN02187 427 DALERLKGFCTRHAKK 442 (462)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 9999999888765543
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-18 Score=182.12 Aligned_cols=302 Identities=12% Similarity=0.025 Sum_probs=189.5
Q ss_pred HHHHHHHHHHhCCC----CCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 182 SKIRKRIMDFMNIS----EDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 182 ~~~r~~ia~~lga~----~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
.++|+.|+++++.. -+..+|++|+|+|+|+.+++.++ .++||+|++....+. . + ...++..|++++.++++
T Consensus 76 ~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l-~~~gd~Vlv~~p~y~-~--~-~~~~~~~g~~~~~~~~~ 150 (403)
T TIGR01265 76 LAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEAL-ANPGANILVPRPGFP-L--Y-DTRAAFSGLEVRLYDLL 150 (403)
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHh-CCCCCEEEEeCCCch-h--H-HHHHHHcCCEEEEecCC
Confidence 47888899988741 12234999999999999999999 689999765443322 1 1 34567789999999875
Q ss_pred C-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcC---C-CCCC
Q 037063 258 W-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALG---S-KDMD 328 (588)
Q Consensus 258 ~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~---~-~d~~ 328 (588)
. .++.+|.+++++++. ++++++++++++|+||..+| +++| ++|+++|+++|+|++..- . ....
T Consensus 151 ~~~~~~~d~~~l~~~~~--------~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~ 222 (403)
T TIGR01265 151 PEKDWEIDLDGLEALAD--------EKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFI 222 (403)
T ss_pred cccCCccCHHHHHHHhC--------cCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCcc
Confidence 3 346789999999887 67899999999999999998 5566 889999999999998321 1 0011
Q ss_pred C-CCCCCCCCcEEEeccCccCCCCCCceEEEEEeC--cc-----hhcccCCCCCCCceEeeecCCCcccccccccccccc
Q 037063 329 T-LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKK--SS-----ASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS 400 (588)
Q Consensus 329 ~-l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~--~~-----~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~ 400 (588)
+ ..+.....-+++.|+.|.|+.+..++|++++.+ +. ++.+......
T Consensus 223 ~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~-------------------------- 276 (403)
T TIGR01265 223 PMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQR-------------------------- 276 (403)
T ss_pred chhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhhh--------------------------
Confidence 1 111111123677799998876456799999853 22 2212111000
Q ss_pred cCCCCCccchhhHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEE
Q 037063 401 KFPESSISGVSSKLVECKGLDH-ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFN 479 (588)
Q Consensus 401 e~GT~~~~~~~~~~al~~aL~~-l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~ 479 (588)
..+...+.+ .++..+|+. .... +++..+++++.++++.+.|..+ +++++..| ..|..+-+.
T Consensus 277 ~~~~~~~~q----~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~p----~~g~f~~~~ 338 (403)
T TIGR01265 277 ILGPATIVQ----GALPDILENTPQEF-FDGKISVLKSNAELCYEELKDI---------PGLVCPKP----EGAMYLMVK 338 (403)
T ss_pred hcCCChHHH----HHHHHHHHhChHHH-HHHHHHHHHHHHHHHHHHHhcC---------CCceecCC----CceeEEEEe
Confidence 001111111 233344432 1111 4555566666677788877763 34554433 223444444
Q ss_pred eecCC-CCCcCHHHH-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHH
Q 037063 480 VFDWN-GTRIDPALV-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYR 557 (588)
Q Consensus 480 ~~~~~-g~~i~~~~v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~ 557 (588)
++... ....+...+ .+++++.||.+..|..+. .. ++||+|++. ..+.+++
T Consensus 339 ~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~------------------------~~--~~iRis~~~--~~~~l~~ 390 (403)
T TIGR01265 339 LELELFPEIKDDVDFCEKLVREESVICLPGSAFG------------------------LP--NWVRITITV--PESMLEE 390 (403)
T ss_pred ccccccCCCCCHHHHHHHHHHhCCEEEeCccccC------------------------CC--CeEEEEecC--CHHHHHH
Confidence 43210 001234455 555788999999884331 01 289999984 5788888
Q ss_pred HHHHHHHhhhh
Q 037063 558 LWAFVSRFLDA 568 (588)
Q Consensus 558 li~~l~~~l~~ 568 (588)
.++.|.+++++
T Consensus 391 ~l~~l~~~~~~ 401 (403)
T TIGR01265 391 ACSRIKEFCER 401 (403)
T ss_pred HHHHHHHHHHh
Confidence 88888887754
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.2e-18 Score=180.35 Aligned_cols=302 Identities=13% Similarity=0.152 Sum_probs=190.2
Q ss_pred HHHHHHHHHh----CCCCC-CceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 183 KIRKRIMDFM----NISED-DYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 183 ~~r~~ia~~l----ga~~~-e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++|+.+++++ ++..+ +.+|++|+|+++|+.+++.++ +.+||+|++....+... ...++..|++++.++.+
T Consensus 71 ~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~-~~~gd~vl~~~p~y~~~----~~~~~~~g~~~~~~~~~ 145 (391)
T PRK07309 71 ELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAI-LEPGDKVLLPAPAYPGY----EPIVNLVGAEIVEIDTT 145 (391)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcch----HHHHHHcCCEEEEEecC
Confidence 5555555554 44221 235999999999999999998 89999977654433322 34556789999999986
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCH---HHH-HHHHHcCcEEEEeCCCcC----CCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSY---MWM-SVAAEKGWHVLLDATALG----SKDMDT 329 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl---~~I-~~a~~~g~~vvvDaa~~~----~~d~~~ 329 (588)
..+..++.++|+++++. ..++++++++++++||||..++. ++| ++|+++|+++|+|.+..- +....+
T Consensus 146 ~~~~~~d~~~l~~~~~~-----~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~ 220 (391)
T PRK07309 146 ENDFVLTPEMLEKAILE-----QGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVS 220 (391)
T ss_pred CcCCcCCHHHHHHHhhc-----cCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCC
Confidence 33457899999999861 11368999999999999999984 445 788999999999998432 100111
Q ss_pred C-CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 330 L-GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 330 l-~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
+ .+ ...--+++.|++|.||.+..++|+++.++++++.+...... . ..++..+.
T Consensus 221 ~~~~-~~~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~~~~---~----------------------~~~~~~~~ 274 (391)
T PRK07309 221 IAEY-LPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQY---L----------------------VTAATTMA 274 (391)
T ss_pred HHHh-ccCCEEEEecChhhccCccceeEEEEeCHHHHHHHHHHHhh---c----------------------ccCCChHH
Confidence 1 01 11134788899999985445699999998887765432100 0 00111111
Q ss_pred chhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE-EEeecCCCCC
Q 037063 409 GVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA-FNVFDWNGTR 487 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~-f~~~~~~g~~ 487 (588)
+ .++...|+.-... .....++.+..++++.+.|.++ +++++.| .++... +.+++ +..
T Consensus 275 q----~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~p-----~gg~~~~~~l~~--~~~ 332 (391)
T PRK07309 275 Q----FAAVEALTNGKDD-ALPMKKEYIKRRDYIIEKMTDL----------GFKIIKP-----DGAFYIFAKIPA--GYN 332 (391)
T ss_pred H----HHHHHHHhCChhH-HHHHHHHHHHHHHHHHHHHHHC----------CCeecCC-----CeeEEEEEECCC--CCC
Confidence 1 2222333321010 2334455566677788888763 3444443 234333 34432 111
Q ss_pred cCHHHHH-HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 488 IDPALVQ-KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 488 i~~~~v~-~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
.+...+. +++.++||.+.+|.... . .+..++|++++. +.++++..++.|++++
T Consensus 333 ~~~~~~~~~l~~~~gv~v~pg~~f~----------------~--------~~~~~iRi~~~~--~~~~l~~~i~~l~~~~ 386 (391)
T PRK07309 333 QDSFKFLQDFARKKAVAFIPGAAFG----------------P--------YGEGYVRLSYAA--SMETIKEAMKRLKEYM 386 (391)
T ss_pred CCHHHHHHHHHHhCCEEEeCchhhC----------------C--------CCCCEEEEEecC--CHHHHHHHHHHHHHHH
Confidence 2344444 67788999998874321 0 122399999874 6889999999999887
Q ss_pred hh
Q 037063 567 DA 568 (588)
Q Consensus 567 ~~ 568 (588)
++
T Consensus 387 ~~ 388 (391)
T PRK07309 387 EE 388 (391)
T ss_pred Hh
Confidence 54
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-18 Score=180.86 Aligned_cols=289 Identities=10% Similarity=0.056 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
..++|+.|++++++++++ |++|+|+++++.+++..+ +++||.|++....+... ...++..|++++.+|++ .+
T Consensus 69 ~~~Lr~~ia~~~~~~~~~--I~it~G~~~~l~~~~~~~-~~~gd~vlv~~p~y~~~----~~~~~~~g~~~~~vp~~-~~ 140 (369)
T PRK08153 69 NHDLRHALAAHHGVAPEN--IMVGEGIDGLLGLIVRLY-VEPGDPVVTSLGAYPTF----NYHVAGFGGRLVTVPYR-DD 140 (369)
T ss_pred cHHHHHHHHHHhCCCHHH--EEEcCCHHHHHHHHHHHh-cCCCCEEEECCCcchHH----HHHHHHcCCeEEEeeCC-CC
Confidence 358999999999998765 999999999999999998 88999987655433212 23345679999999985 33
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH--cCcEEEEeCCCc--CCC-CCCCCCCCC
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE--KGWHVLLDATAL--GSK-DMDTLGLSL 334 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~--~g~~vvvDaa~~--~~~-d~~~l~l~~ 334 (588)
.++.+++.+.+.. .++++++++.++||||..+|.+++ ++++. +|++||+|.+.. ... ....+. ..
T Consensus 141 -~~~~~~l~~~~~~-------~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~-~~ 211 (369)
T PRK08153 141 -REDLDALLDAARR-------ENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPID-TD 211 (369)
T ss_pred -CCCHHHHHHHhcc-------cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhh-hc
Confidence 4788888766541 578999999999999999999998 66654 389999999832 110 011221 11
Q ss_pred CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHH
Q 037063 335 FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKL 414 (588)
Q Consensus 335 ~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~ 414 (588)
.+.-+++.||.|.+|.+...+|+++.++++++.+....... + .+... .+
T Consensus 212 ~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~~~~~-~---------------------------~s~~~---q~ 260 (369)
T PRK08153 212 DPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRNHF-G---------------------------MNRIA---QA 260 (369)
T ss_pred CCCEEEEecchHhccCcchheeeeecCHHHHHHHHHhhcCC-C---------------------------CCHHH---HH
Confidence 22347788999999854456899999888776554322110 0 11111 12
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHH
Q 037063 415 VECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQ 494 (588)
Q Consensus 415 al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~ 494 (588)
++..+|+. ... ++.+.++.+..++++.+.|+.+ ++.++ | ..+.++.+.+.. + ......+.
T Consensus 261 ~~~~~l~~-~~~-~~~~~~~~~~~r~~~~~~L~~~----------g~~~~-p----~~~~f~~~~~~~-~--~~~a~~l~ 320 (369)
T PRK08153 261 AALAALKD-QAY-LAEVVGKIAAARDRIAAIARAN----------GLTPL-P----SATNFVAIDCGR-D--GAFARAVL 320 (369)
T ss_pred HHHHHhcC-HHH-HHHHHHHHHHHHHHHHHHHHHC----------CCccC-C----CcCcEEEEECCC-C--cccHHHHH
Confidence 33344431 111 4556667777778888877763 22322 2 234555444431 1 12355677
Q ss_pred HHHHhCCcEec-cccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 495 KLADRHNISLS-CGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 495 ~~l~~~gI~v~-~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
+.|.++||.++ +|. . .+..++|+|++ +.+|+++++++|++++.
T Consensus 321 ~~l~~~Gi~v~~p~~-~--------------------------~~~~~iRis~~---~~~~~~~~~~al~~~~~ 364 (369)
T PRK08153 321 DGLIARDIFVRMPGV-A--------------------------PLDRCIRVSCG---PDEELDLFAEALPEALE 364 (369)
T ss_pred HHHHHCCeEEeeCCC-C--------------------------CCCCeEEEecC---CHHHHHHHHHHHHHHHH
Confidence 77778899996 331 0 11238999987 78999999999998765
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-17 Score=174.21 Aligned_cols=329 Identities=12% Similarity=0.032 Sum_probs=205.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+++.+.+++++|++ .+++|+|+|+|+.+++.++.+++||+|+ ....|++ . ...+...|++++.+++
T Consensus 30 g~~~~~~e~~la~~~g~~----~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~-~----~~~~~~~G~~~v~vd~ 100 (376)
T TIGR02379 30 GPFSRRCETWLENRTGTK----KALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVS-T----ANAFVLRGAKIVFVDI 100 (376)
T ss_pred cHHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHH-H----HHHHHHcCCEEEEEec
Confidence 356778899999999884 3999999999999999988789999966 4556654 2 2233567999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC--CCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS--KDMDTLGLS 333 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~--~d~~~l~l~ 333 (588)
+..++.+|+++++++++ +++++|+.. +++|...|+++| ++|+++|++||+|+++..+ .+..+++-
T Consensus 101 d~~~~~~d~~~le~~i~--------~~tk~Iip~---~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~- 168 (376)
T TIGR02379 101 RPDTMNIDETLIESAIT--------HRTKAIVPV---HYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGS- 168 (376)
T ss_pred CCCcCCCCHHHHHHhcC--------cCceEEEEe---CCCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccCC-
Confidence 85556799999999988 688998754 569999999999 9999999999999998775 22223331
Q ss_pred CCCCcEEEeccCc--cCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC-ccc
Q 037063 334 LFKPDFLICSFYK--IFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS-ISG 409 (588)
Q Consensus 334 ~~~~D~vv~S~~K--~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~-~~~ 409 (588)
-.|+.++|||+ .+..++. .|+++.+ +++.++++.....| ....... . .... ...+...|+.. +..
T Consensus 169 --~~~~~~fSf~~~K~l~~g~~-gG~v~~~~~~~~~~~~~~~~~g-~~~~~~~--~---~~~~--~~~~~~~g~n~~~~~ 237 (376)
T TIGR02379 169 --IGHLGTFSFHETKNYTSGGE-GGALLINDQAFIERAEIIREKG-TNRSQFF--R---GEVD--KYTWRDIGSSYLPSE 237 (376)
T ss_pred --CCCEEEEeCCCCCcCcccCC-ceEEEECCHHHHHHHHHHHHhC-CCCcccc--c---cCCC--cceeeeecccCCccH
Confidence 13889999986 3442133 4776666 56667776554321 1100000 0 0000 00111223221 222
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc--cEEEEEeecCCCCC
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG--PSLAFNVFDWNGTR 487 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg--~iv~f~~~~~~g~~ 487 (588)
+ . ...++..++. ++.+.++.++++++..+.|..+.+. .++++..... .... ..+.+.+.. +
T Consensus 238 ~---~-Aa~g~~qL~~--l~~~~~~r~~~~~~y~~~L~~~~~~------~~~~~~~~~~-~~~~~~~~~~i~~~~--~-- 300 (376)
T TIGR02379 238 L---Q-AAYLWAQLEQ--ADRINQDRLATWQLYQDALKPLEEK------GIIELPSIPN-GCQHNAHMFYIKLKD--E-- 300 (376)
T ss_pred H---H-HHHHHHHHHH--hHHHHHHHHHHHHHHHHHhccCCcC------CeeeCCCCCC-CCeeeeEEEEEEECC--c--
Confidence 2 1 2244555555 4777788888888899988775211 1122211111 1111 233333322 1
Q ss_pred cCHHHHHHHHHhCCcEeccccccCccccc--ch-----HHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHH
Q 037063 488 IDPALVQKLADRHNISLSCGFLQNIFFSG--EY-----EQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 488 i~~~~v~~~l~~~gI~v~~G~~c~~~~~~--~~-----~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~ 560 (588)
.+.+.+.+.|.++||..+.+....+.... .+ .......+. ...|.+-++...+.+||+++++
T Consensus 301 ~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~-----------~~~l~LP~~~~l~~~~~~~i~~ 369 (376)
T TIGR02379 301 DDRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKES-----------ERLVRLPLYYGLSKEDQARVIQ 369 (376)
T ss_pred CCHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHH-----------hceEEccCCCCCCHHHHHHHHH
Confidence 35788999999999988754321110000 00 000011111 1279999999999999999999
Q ss_pred HHHHhh
Q 037063 561 FVSRFL 566 (588)
Q Consensus 561 ~l~~~l 566 (588)
.|++++
T Consensus 370 ~i~~~~ 375 (376)
T TIGR02379 370 TICDYL 375 (376)
T ss_pred HHHHHh
Confidence 999864
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=177.83 Aligned_cols=324 Identities=14% Similarity=0.078 Sum_probs=198.9
Q ss_pred cCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEE
Q 037063 173 YGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 173 ~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
||. .....++++++|+++|.+ ..++|++|.++.+ .++.++ +++||+|+++...|...... +...+++++
T Consensus 39 yg~--~~~~~~LE~~lA~~~g~e---~al~~~sG~~a~~-~~i~~l-~~~GD~Vl~~~~~h~s~~~~----~~l~~~~~~ 107 (392)
T PLN03227 39 YGT--IDAHLELEQCMAEFLGTE---SAILYSDGASTTS-STVAAF-AKRGDLLVVDRGVNEALLVG----VSLSRANVR 107 (392)
T ss_pred cCC--hHHHHHHHHHHHHHhCCC---cEEEecCcHHHHH-HHHHHh-CCCCCEEEEeccccHHHHHH----HHHcCCeEE
Confidence 454 347889999999999984 3588888888877 555557 89999977655444323332 233467777
Q ss_pred EEeccCCCCccCHHHHHHHHhhhcc------ccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC
Q 037063 253 SAEFAWPNLRIHSGKLMKKIVGKRK------KKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK 325 (588)
Q Consensus 253 ~v~~~~~~~~i~~e~l~~~i~~~~~------~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~ 325 (588)
.++.. |.+++++.+..-+. ....+++++|++..+.|++|.+.|+++| ++|+++|+++++|.++..+.
T Consensus 108 ~~~~~------d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~ 181 (392)
T PLN03227 108 WFRHN------DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGT 181 (392)
T ss_pred EeCCC------CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccc
Confidence 76653 34555554431000 0012478999999999999999999999 99999999999999987552
Q ss_pred CC-------CCCCCC-CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccccc
Q 037063 326 DM-------DTLGLS-LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDES 397 (588)
Q Consensus 326 d~-------~~l~l~-~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~ 397 (588)
.- ..+++. ..++|+++.|++|.+| |.| |++..++++++.++....+ .
T Consensus 182 ~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g--~~g-g~v~~~~~~~~~~~~~~~~---~------------------- 236 (392)
T PLN03227 182 LGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG--SVG-GMTVGSEEVVDHQRLSGSG---Y------------------- 236 (392)
T ss_pred cCCCCCcHHHHcCCCCCCCceEEEeechhhhh--ccC-cEEecCHHHHHHHHHhCcC---c-------------------
Confidence 10 112221 1246999999999888 553 6777787776554422111 0
Q ss_pred ccccCCC-CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE
Q 037063 398 SQSKFPE-SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL 476 (588)
Q Consensus 398 ~f~e~GT-~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv 476 (588)
.| .+. +++.. ++...+++.+.+ .+.+.++.+.+.+++++.|++..++. +..++-.........++|+
T Consensus 237 ~~--~~~~~p~~~----~aa~~al~~~~~--~~~~~~~l~~~~~~l~~~L~~~~~~~----~~~~rg~~~~~~~~~~~i~ 304 (392)
T PLN03227 237 CF--SASAPPFLA----KADATATAGELA--GPQLLNRLHDSIANLYSTLTNSSHPY----ALKLRNRLVITSDPISPII 304 (392)
T ss_pred cc--cCCCCHHHH----HHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCcc----ccccccccccCCCCCCCEE
Confidence 11 111 12122 222345544333 25677888899999999998642221 0011100000012357888
Q ss_pred EEEeecCCCCC-c----CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCC
Q 037063 477 AFNVFDWNGTR-I----DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTN 551 (588)
Q Consensus 477 ~f~~~~~~g~~-i----~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t 551 (588)
.+.+.+..... . ....+.+.+.++||.+.....+. . .. .. ......||++++..+|
T Consensus 305 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~-~--~~---------~~-------~~P~~~iR~~~~~~~t 365 (392)
T PLN03227 305 YLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHV-K--KF---------LQ-------LVPPPCLRVVANASHT 365 (392)
T ss_pred EEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEeccccc-C--Cc---------CC-------CCCCceEEEEecCCCC
Confidence 88885421000 0 01356677778899886311110 0 00 00 0111289999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 037063 552 FEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 552 ~eDv~~li~~l~~~l~~~ 569 (588)
.|||+++++.|++.+++-
T Consensus 366 ~eei~~~~~~l~~~~~~~ 383 (392)
T PLN03227 366 REDIDKLLTVLGEAVEAI 383 (392)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988663
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=176.68 Aligned_cols=287 Identities=16% Similarity=0.144 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCC-
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWP- 259 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~- 259 (588)
..++|+.|++++++++++ |++|+|+++++.+++.++ .+ ++|++....+. .....++..|++++.++.+.+
T Consensus 56 ~~~lr~~ia~~~~~~~~~--i~it~Ga~~~l~~~~~~~--~~-~~v~i~~P~y~----~~~~~~~~~g~~~~~~~~~~~~ 126 (354)
T PRK06358 56 YLELRKRIASFEQLDLEN--VILGNGATELIFNIVKVT--KP-KKVLILAPTFA----EYERALKAFDAEIEYAELTEET 126 (354)
T ss_pred HHHHHHHHHHHhCCChhh--EEECCCHHHHHHHHHHHh--CC-CcEEEecCChH----HHHHHHHHcCCeeEEEeCcccc
Confidence 368999999999998776 999999999999999986 34 46555444332 124456778999999998632
Q ss_pred CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCc--C--CCCCCCCC
Q 037063 260 NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATAL--G--SKDMDTLG 331 (588)
Q Consensus 260 ~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~--~--~~d~~~l~ 331 (588)
...+| +++.+.+. .+++++++++++||||..++.++ | ++|+++|+++|+|.+-. . +.....+.
T Consensus 127 ~~~~d-~~~~~~~~--------~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~ 197 (354)
T PRK06358 127 NFAAN-EIVLEEIK--------EEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMIN 197 (354)
T ss_pred CCCcc-HHHHHhhc--------cCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHH
Confidence 23577 66666665 56899999999999999999555 5 77889999999999832 1 10001111
Q ss_pred -CCCCCCcEEEeccCccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 332 -LSLFKPDFLICSFYKIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 332 -l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
++...--+++.|+.|.||++..++|++++. +.+++.+...... +. .+...
T Consensus 198 ~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~~--~~--------------------------~~~~~ 249 (354)
T PRK06358 198 YLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREP--WS--------------------------INTFA 249 (354)
T ss_pred hccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCC--Cc--------------------------chHHH
Confidence 112223377889999999656779999885 4555544332211 00 01000
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcC
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRID 489 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~ 489 (588)
..+...+|+.-.. +++..++.+..++++.+.|+++ +++.++.| .++.+-+.+.+
T Consensus 250 ---q~~~~~~l~~~~~--~~~~~~~~~~~r~~l~~~L~~~---------~~~~~~~~-----~g~f~~~~~~~------- 303 (354)
T PRK06358 250 ---DLAGQTLLDDKEY--IKKTIQWIKEEKDFLYNGLSEF---------KGIKVYKP-----SVNFIFFKLEK------- 303 (354)
T ss_pred ---HHHHHHHhccHHH--HHHHHHHHHHHHHHHHHHHhcC---------CCcEEcCC-----cceEEEEEcCc-------
Confidence 0222344421111 3555566677778888888764 45666543 34555455443
Q ss_pred HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 490 PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 490 ~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
...+.+.|.++||.++.|.... . .+..+||+|++ +.++.++|+++|.+++
T Consensus 304 ~~~~~~~l~~~gI~v~~~~~f~----------------~--------~~~~~iRls~~---~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 304 PIDLRKELLKKGILIRSCSNYR----------------G--------LDENYYRVAVK---SREDNKKLLKALEVIL 353 (354)
T ss_pred hHHHHHHHHHCCeEEEECCCCC----------------C--------CCCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence 3556666777899999874320 0 12238999987 7899999999998865
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-17 Score=178.89 Aligned_cols=161 Identities=12% Similarity=0.107 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
...++++++|+++.|.+ . .++++++++|+.+++.++ +++||+|++ ...|+. .+..+.......|+++.+++.
T Consensus 58 pt~~~Le~~lA~l~g~~--~--~l~~ssG~~Ai~~al~al-~~~Gd~Vl~~~~~Y~~-t~~~~~~~l~~~gi~v~~~d~- 130 (425)
T PRK06084 58 PTNDVLEQRVAALEGGV--G--ALAVASGMAAITYAIQTI-AEAGDNIVSVAKLYGG-TYNLLAHTLPRIGIETRFAAH- 130 (425)
T ss_pred chHHHHHHHHHHHhCCC--c--eeEehhHHHHHHHHHHHH-hCCCCEEEEeCCCcch-HHHHHHHhcccceeEEEEECC-
Confidence 34568999999999963 2 667888889999999998 899999764 455554 233333333446888877754
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFK 336 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~ 336 (588)
.|+++++++|+ +++++|++++++|++|...|+++| ++|+++|++||+|+++..|....++. +.
T Consensus 131 -----~d~e~le~ai~--------~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p~~---~g 194 (425)
T PRK06084 131 -----DDIAALEALID--------ERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRPFE---HG 194 (425)
T ss_pred -----CCHHHHHHHhc--------cCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCChhh---cC
Confidence 37899999998 689999999999999999999999 99999999999999988774333332 34
Q ss_pred CcEEEeccCccCCCCCCceEEEEEeC
Q 037063 337 PDFLICSFYKIFGENPSGFGCLFVKK 362 (588)
Q Consensus 337 ~D~vv~S~~K~~G~~P~G~G~L~v~~ 362 (588)
+|+++.|++|++|.+...+|.+++.+
T Consensus 195 aDivv~S~tK~l~G~g~~~gG~v~~~ 220 (425)
T PRK06084 195 ADIVVHSLTKYIGGHGTSIGGIVVDS 220 (425)
T ss_pred CCEEEECchhcccccccceeEEEEeC
Confidence 99999999998873223456666643
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-18 Score=180.22 Aligned_cols=296 Identities=14% Similarity=0.118 Sum_probs=185.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.....+++++|+++.|.+ .++.++|+++|+.+++. + +++||+|++. ..|.. ...++.......+.++.+
T Consensus 53 ~p~~~~le~~lA~leg~~----~~v~~~sG~aAi~~~l~-~-l~~GD~VI~~~~~yg~-~~~~~~~~~~~~~~~~~~--- 122 (364)
T PRK07269 53 NPTRAKLEETLAAIESAD----YALATSSGMSAIVLAFS-V-FPVGSKVVAVRDLYGG-SFRWFNQQEKEGRFHFTY--- 122 (364)
T ss_pred CccHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHH-H-hCCCCEEEEecCCcCc-hHHHHHHHHhcCcEEEEe---
Confidence 344678999999999863 38999999999999885 4 6899996644 44443 444443333332332222
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
..|+++++++|+ ++|++|++.+++|++|...|+++| ++|+++|+++++|++...|....+++ .
T Consensus 123 -----~~d~~~l~~~i~--------~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~pl~---~ 186 (364)
T PRK07269 123 -----ANTEEELIAAIE--------EDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIE---L 186 (364)
T ss_pred -----cCCHHHHHHhcC--------cCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchh---h
Confidence 247889999998 789999999999999999999999 99999999999999976663334443 3
Q ss_pred CCcEEEeccCccCCCCCCc--eEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhh
Q 037063 336 KPDFLICSFYKIFGENPSG--FGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSS 412 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G--~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~ 412 (588)
.+|+++.|++|++|. +.. .|+++.++ ++.+++...... .| ...+...
T Consensus 187 gaDivv~S~tK~l~g-~~d~~gG~v~~~~~~l~~~~~~~~~~-~G-------------------------~~~s~~~--- 236 (364)
T PRK07269 187 GADIVLHSATKYLSG-HNDVLAGVVVTNDLELYEKLFYNLNT-TG-------------------------AVLSPFD--- 236 (364)
T ss_pred CCcEEEecCceeccC-CCcccceEEEeCcHHHHHHHHHHHHH-hC-------------------------CCCCHHH---
Confidence 499999999998872 332 56667654 444444311100 01 0111111
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCCCCcccEEEEEeecCCCCCcCHH
Q 037063 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVMFDRGPSLAFNVFDWNGTRIDPA 491 (588)
Q Consensus 413 ~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~ 491 (588)
...++..++. ++...++.++.+.++.+.|++. |.| +++-| ..|++++|.+.+ .+
T Consensus 237 ---a~l~~~~L~t--L~~r~~~~~~na~~~a~~L~~~---------p~v~~v~yp----g~gg~~sf~~~~-------~~ 291 (364)
T PRK07269 237 ---SYLLMRGLKT--LSLRMERSTANAQEVVAFLKKS---------PAVKEVLYT----GKGGMISFKVAD-------ET 291 (364)
T ss_pred ---HHHHHcCCCc--HHHHHHHHHHHHHHHHHHHHhC---------CCccEEeCC----CcCcEEEEEECC-------HH
Confidence 1122222332 4556666677777777777762 433 45545 358999999853 34
Q ss_pred HHHHHHHhCCc---Eecccc----ccCcccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCCCCCHHHHHHHHHHH
Q 037063 492 LVQKLADRHNI---SLSCGF----LQNIFFSGEYEQERVRVLETRSGTNETRSGV--SVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 492 ~v~~~l~~~gI---~v~~G~----~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~~t~eDv~~li~~l 562 (588)
.+.++++...+ ..+-|. .++|.....+. ........ .|+ +.||+|+|. ||++.|++-|
T Consensus 292 ~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~--~~~~~r~~-------~Gi~~~liRlsvGl----E~~~dli~dl 358 (364)
T PRK07269 292 RIPHILNSLKVFTFAESLGGVESLITYPTTQTHAD--IPAEVRHS-------YGLTDDLLRLSIGI----EDARDLIADL 358 (364)
T ss_pred HHHHHHHhCCcceEccCCCCcCeEeeCCccccccc--CCHHHHHh-------cCCCCCeEEEEecc----CCHHHHHHHH
Confidence 44555554333 233332 22232211110 00011111 333 389999997 8899999888
Q ss_pred HHhhh
Q 037063 563 SRFLD 567 (588)
Q Consensus 563 ~~~l~ 567 (588)
.+.|+
T Consensus 359 ~~al~ 363 (364)
T PRK07269 359 KQALE 363 (364)
T ss_pred HHHhc
Confidence 87664
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-18 Score=181.75 Aligned_cols=303 Identities=11% Similarity=0.035 Sum_probs=191.0
Q ss_pred HHHHHHHHHHhC------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 182 SKIRKRIMDFMN------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 182 ~~~r~~ia~~lg------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.++|+.++++++ ++++ +|++|+|+++|+.+++.++ +++||+|++....+. .+ ...++..|++++.++
T Consensus 76 ~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~-~~---~~~~~~~g~~~~~i~ 148 (409)
T PLN02656 76 PQARRAIAEYLSRDLPYKLSLD--DVFITSGCTQAIDVALSML-ARPGANILLPRPGFP-IY---ELCAAFRHLEVRYVD 148 (409)
T ss_pred HHHHHHHHHHHHHhcCCCCCcc--cEEEeCChHHHHHHHHHHH-hCCCCeEEEeCCCCC-cH---HHHHHHcCCEEEEEe
Confidence 367777777763 4444 4999999999999999998 799999765443332 12 234456799999999
Q ss_pred ccCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCc--C--CCC
Q 037063 256 FAWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATAL--G--SKD 326 (588)
Q Consensus 256 ~~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~--~--~~d 326 (588)
++.+ ++.+|.++++++++ ++++++++++++|+||..++.++ | ++|+++|++||+|++.. . +..
T Consensus 149 ~~~~~~~~~d~~~l~~~~~--------~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~ 220 (409)
T PLN02656 149 LLPEKGWEVDLDAVEALAD--------QNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNP 220 (409)
T ss_pred CCCcCCCCCCHHHHHHHhc--------cCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCC
Confidence 8533 35689999999887 67899999999999999997554 5 78899999999999832 1 111
Q ss_pred CCCC-CCCCCCCcEEEeccCccCCCCCCceEEEEEeC--------cchhcccCCCCCCCceEeeecCCCccccccccccc
Q 037063 327 MDTL-GLSLFKPDFLICSFYKIFGENPSGFGCLFVKK--------SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDES 397 (588)
Q Consensus 327 ~~~l-~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~--------~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~ 397 (588)
..++ .+.....-+++.||.|.|+.+..++|+++..+ ++++.+......
T Consensus 221 ~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~----------------------- 277 (409)
T PLN02656 221 FVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDI----------------------- 277 (409)
T ss_pred cccHHHhcccCcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHhh-----------------------
Confidence 1111 11111234678899998776567799999852 344433221100
Q ss_pred ccccCCCCCccchhhHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE
Q 037063 398 SQSKFPESSISGVSSKLVECKGLDH-ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL 476 (588)
Q Consensus 398 ~f~e~GT~~~~~~~~~~al~~aL~~-l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv 476 (588)
..+...+.+ .++..+|+. -+.. +++..++.++.++++.+.|..+ +.+....+ ..|+..
T Consensus 278 ---~~~~s~~~q----~a~~~~l~~~~~~~-~~~~~~~~~~~r~~~~~~L~~~---------~~~~~~~~----p~gg~~ 336 (409)
T PLN02656 278 ---LGGPATFIQ----AAVPTILEQTDESF-FKKTINILKQSSDICCDRIKEI---------PCITCPHK----PEGSMA 336 (409)
T ss_pred ---hcCCCHHHH----HHHHHHHhcCcHHH-HHHHHHHHHHHHHHHHHHHhhC---------CCCcCCcC----CCeEEE
Confidence 001111111 233344431 0111 4556666777778888888764 22211111 234443
Q ss_pred EE-EeecC-CCCCcCH-HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHH
Q 037063 477 AF-NVFDW-NGTRIDP-ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFE 553 (588)
Q Consensus 477 ~f-~~~~~-~g~~i~~-~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~e 553 (588)
.+ .+... .....+. +.+.+++.+.||.+.+|..+. ..+++|++++. +.|
T Consensus 337 ~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg--------------------------~~~~iRi~~~~--~~e 388 (409)
T PLN02656 337 VMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVG--------------------------LKNWLRITFAA--DPS 388 (409)
T ss_pred EEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcC--------------------------CCCeEEEEeCC--CHH
Confidence 33 33210 0000123 346788889999999884431 11289999994 789
Q ss_pred HHHHHHHHHHHhhhhhhc
Q 037063 554 DTYRLWAFVSRFLDADFV 571 (588)
Q Consensus 554 Dv~~li~~l~~~l~~~~~ 571 (588)
+++..++.|++++...+.
T Consensus 389 ~l~eal~rl~~~~~~~~~ 406 (409)
T PLN02656 389 SLEEALGRIKSFYLRHSK 406 (409)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999888776553
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-18 Score=181.28 Aligned_cols=298 Identities=11% Similarity=0.013 Sum_probs=190.3
Q ss_pred HHHHHHHHHh----C--CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 183 KIRKRIMDFM----N--ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 183 ~~r~~ia~~l----g--a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++|+.|++++ | ++++ ..|++|+|+++|+.+++..+ ..+||+|++....+..+ ...++..|++++.+++
T Consensus 72 ~lr~aia~~~~~~~g~~~~~~-~~I~it~Gs~~al~~~~~~l-~~~gd~Vlv~~P~y~~~----~~~~~~~g~~~~~v~~ 145 (388)
T PRK07366 72 DFREAAAQWYEQRFGLAVDPE-TEVLPLIGSQEGTAHLPLAV-LNPGDFALLLDPGYPSH----AGGVYLAGGQIYPMPL 145 (388)
T ss_pred HHHHHHHHHHHHhhCCcCCCc-CeEEECCCcHHHHHHHHHHh-CCCCCEEEEcCCCCcch----HHHHHhcCCEEEEEEC
Confidence 5677777766 5 4444 14999999999999999998 88999977655543322 3455678999999999
Q ss_pred cCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCC--cC--CCC-
Q 037063 257 AWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATA--LG--SKD- 326 (588)
Q Consensus 257 ~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~--~~--~~d- 326 (588)
+.+ ...++.+++++.+. +++++|+++.++||||..++.+++ ++|+++|++||+|.+- +. +..
T Consensus 146 ~~~~~~~~d~~~l~~~~~--------~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~ 217 (388)
T PRK07366 146 RAENDFLPVFADIPTEVL--------AQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVE 217 (388)
T ss_pred CCccCCCCCHHHHHHhhc--------ccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCC
Confidence 732 24567788877776 578999999999999999998875 5789999999999972 11 110
Q ss_pred CCC-CCCCCC-CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 327 MDT-LGLSLF-KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 327 ~~~-l~l~~~-~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
... ..+... ..-+++.||.|.||.+..++|+++.++++++.+....... ..++
T Consensus 218 ~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~li~~l~~~~~~~-------------------------~~~~ 272 (388)
T PRK07366 218 PPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQLIQALRQVKAVV-------------------------DFNQ 272 (388)
T ss_pred CCChhhCCCCcccEEEEeecccccCCcchhheehcCCHHHHHHHHHHHhhc-------------------------ccCC
Confidence 111 122111 1236778999999865677999999888877665332110 0011
Q ss_pred CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCC
Q 037063 405 SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWN 484 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~ 484 (588)
.+... .++..++..-++. ++++.++.+..++++.+.|.++ ++.+..| ..|..+-+.+++.-
T Consensus 273 ~~~~~----~~a~~~l~~~~~~-l~~~~~~~~~~r~~l~~~L~~~----------~~~~~~p----~~g~f~~~~~~~~~ 333 (388)
T PRK07366 273 YRGIL----NGAIAALTGPQAT-VQQTVQIFRQRRDAFINALHQI----------GWPVPLP----EATMYVWAKLPEPW 333 (388)
T ss_pred CHHHH----HHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHC----------CCcccCC----CeeEEEEEECCccc
Confidence 11011 1222333211121 4566677777778888888764 2333222 12334444443210
Q ss_pred CCCcCHHHH-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 485 GTRIDPALV-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 485 g~~i~~~~v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
..+...+ .++++++||.++.|..+. . .+.++||+|++. +.++++..++.|+
T Consensus 334 --~~~~~~~~~~l~~~~gv~v~pg~~f~----------------~--------~~~~~iRi~~~~--~~~~l~~~l~rl~ 385 (388)
T PRK07366 334 --QGNSVEFCTQLVAQTGVAASPGSGFG----------------K--------SGEGYVRFALVH--DPDILEEAVERIA 385 (388)
T ss_pred --CCCHHHHHHHHHHhCCEEEeCchHhC----------------c--------CCCCeEEEEecC--CHHHHHHHHHHHH
Confidence 0123444 566688999999884321 0 112389999873 6899999999988
Q ss_pred Hhh
Q 037063 564 RFL 566 (588)
Q Consensus 564 ~~l 566 (588)
++|
T Consensus 386 ~~l 388 (388)
T PRK07366 386 AFL 388 (388)
T ss_pred HhC
Confidence 764
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=175.11 Aligned_cols=283 Identities=13% Similarity=0.068 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
..++|+.|+++++.+++. |++|+|+++++.+++. + +++|+.|+. ...+. .....++..|++++.+|++ +
T Consensus 42 ~~~lr~~ia~~~~~~~~~--I~it~Gs~~~l~~~~~-~-~~~~~vv~~-~P~y~----~y~~~~~~~G~~v~~vp~~-~- 110 (332)
T PRK06425 42 YTDIEDQIKIYTQGLKIK--VLIGPGLTHFIYRLLS-Y-INVGNIIIV-EPNFN----EYKGYAFTHGIRISALPFN-L- 110 (332)
T ss_pred HHHHHHHHHHHhCCCcce--EEECCCHHHHHHHHHH-H-hCCCcEEEe-CCChH----HHHHHHHHcCCeEEEEeCC-c-
Confidence 468999999999998776 9999999999999997 4 567654444 33222 2256678889999999986 2
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCC--cCCCCCCC-CCC-
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATA--LGSKDMDT-LGL- 332 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~--~~~~d~~~-l~l- 332 (588)
..++.+. +.. .++++|++++++||||..++.+++ +.|+++|++||+|.+- +......+ ..+
T Consensus 111 ~~~~~~~----l~~-------~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~ 179 (332)
T PRK06425 111 INNNPEI----LNN-------YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLN 179 (332)
T ss_pred ccCcHHH----Hhh-------cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHh
Confidence 2334333 321 468899999999999999997764 5678899999999982 22100001 111
Q ss_pred CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhh
Q 037063 333 SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSS 412 (588)
Q Consensus 333 ~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~ 412 (588)
...+--+++.||.|.+|++..++|+++.++++++.+...... +. .+....
T Consensus 180 ~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~~~~--~~--------------------------~~~~~~-- 229 (332)
T PRK06425 180 RSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMKISRKITEP--WS--------------------------VCDPAI-- 229 (332)
T ss_pred ccCCCEEEEeecHHhcCCchhhheeeecCHHHHHHHHHcCCC--Cc--------------------------cCHHHH--
Confidence 112234677899999996456699999998887766543211 00 000000
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHH
Q 037063 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPAL 492 (588)
Q Consensus 413 ~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~ 492 (588)
.++. ..+ .+.. +++..+..++.++++.+.|.++ +++++.+ ..|..+.+.+++ ...
T Consensus 230 -~~l~-~~~-~~~~-~~~~~~~~~~~r~~l~~~L~~~----------g~~~~~~----~~g~f~~~~~~~-------~~~ 284 (332)
T PRK06425 230 -DFIR-SID-LDYV-AKHSLDIMENERSYLINNLEAM----------GFRAAGD----PSANFITFMIPD-------AHD 284 (332)
T ss_pred -HHHH-Hhh-hHHH-HHHHHHHHHHHHHHHHHHHHHC----------CCEECCC----CCceEEEEEcCC-------HHH
Confidence 1111 111 1111 2455666677778888888874 3455433 235555555532 456
Q ss_pred HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 493 VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 493 v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
+.+.|.++||.++.|.... ..|.++||+|++ +.+|.++|+++|+++++
T Consensus 285 ~~~~l~~~gi~v~~~~~f~------------------------~~~~~~iRis~~---~~~~~~~l~~al~~~~~ 332 (332)
T PRK06425 285 FYSYLLKNGILVRLLDDYE------------------------CLGEQYIRIAIR---RRSFNIKLVNALRNFLN 332 (332)
T ss_pred HHHHHHHCCeEEEECCCCC------------------------CCCCCEEEEEeC---CHHHHHHHHHHHHHHhC
Confidence 6666667899999874320 012239999998 78999999999998763
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.3e-18 Score=178.42 Aligned_cols=287 Identities=12% Similarity=0.104 Sum_probs=192.0
Q ss_pred HHHHHHHHHHh------CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 182 SKIRKRIMDFM------NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 182 ~~~r~~ia~~l------ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.++|+.|++++ ++++++ |++|+|+++++.+++..+ .++||+|++....+.. ....++..|++++.++
T Consensus 68 ~~lr~aia~~~~~~~~~~~~~~~--I~it~G~~~~l~~~~~~~-~~~gd~v~v~~P~y~~----~~~~~~~~g~~~~~~~ 140 (368)
T PRK03317 68 VALRADLAAYLTAQTGVGLTVEN--VWAANGSNEILQQLLQAF-GGPGRTALGFVPSYSM----HPIIARGTHTEWVEGP 140 (368)
T ss_pred HHHHHHHHHHhhhhccCCCChhh--EEECCCHHHHHHHHHHHh-cCCCCEEEEeCCChHH----HHHHHHhcCCeeEEcc
Confidence 47888888888 455554 999999999999999999 7999997765444331 2345567889888887
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-CC--CCCCC
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS-KD--MDTLG 331 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~-~d--~~~l~ 331 (588)
.+ ++..+|.+++++++.. .++++++++.++||||..+|.+++ ++++..++++|+|.+...- .+ ...+.
T Consensus 141 ~~-~~~~~d~~~l~~~~~~-------~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~ 212 (368)
T PRK03317 141 RA-ADFTLDVDAAVAAIAE-------HRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALT 212 (368)
T ss_pred cC-CCCCCCHHHHHHHHhc-------cCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHH
Confidence 65 5567899999999862 467899999999999999999999 8998889999999985421 00 11111
Q ss_pred C-CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 332 L-SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 332 l-~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
+ ...+-.+++.|+.|.+|.+...+|+++.++++++.+...... . +...+.+
T Consensus 213 ~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~~~~--~-------------------------~~s~~~~- 264 (368)
T PRK03317 213 LLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVRLP--Y-------------------------HLSAVTQ- 264 (368)
T ss_pred HHHhCCCEEEEEechhhhccchhhhhhhhCCHHHHHHHHhcCCC--C-------------------------CCCHHHH-
Confidence 1 111223567799999985344589999988887766532211 0 0011111
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCH
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDP 490 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~ 490 (588)
+++..+|+..+. +.+..+++...++++.+.|.++ ++.++.+ .++++.|.-.. +.
T Consensus 265 ---~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~-----~~~~~~~~~~~------~~ 318 (368)
T PRK03317 265 ---AAARAALRHADE--LLASVAALRAERDRVVAWLREL----------GLRVAPS-----DANFVLFGRFA------DR 318 (368)
T ss_pred ---HHHHHHhhCHHH--HHHHHHHHHHHHHHHHHHHHHC----------CCEeCCC-----CCcEEEEeccC------CH
Confidence 233455544332 2333344566666777777763 3444432 34554442111 35
Q ss_pred HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 491 ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 491 ~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
..+.+.+.++||.++.... .+ ++|++++ +.++++++++.|+++++.+
T Consensus 319 ~~~~~~l~~~Gv~v~~~~~---------------------------~~--~iRi~~~---~~~~~~~~~~~l~~~~~~~ 365 (368)
T PRK03317 319 HAVWQGLLDRGVLIRDVGI---------------------------PG--WLRVTIG---TPEENDAFLAALAEVLATE 365 (368)
T ss_pred HHHHHHHHHCCEEEEeCCC---------------------------CC--eEEEecC---CHHHHHHHHHHHHHHHHHh
Confidence 6677778889999874200 12 8999987 7899999999999887653
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=178.07 Aligned_cols=292 Identities=15% Similarity=0.155 Sum_probs=186.7
Q ss_pred HHHHHHHHHHhC------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 182 SKIRKRIMDFMN------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 182 ~~~r~~ia~~lg------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.++|+.|+++++ +++++ |++|+|+++++++++.++ +++||+|++....+.. + ...++..|++++.++
T Consensus 76 ~~lr~~ia~~l~~~~~~~~~~~~--i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~---~-~~~~~~~g~~v~~v~ 148 (394)
T PRK06836 76 PEVREAIAESLNRRFGTPLTADH--IVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVE---Y-RFYVDNHGGKLVVVP 148 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCcCc--EEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCcc---H-HHHHHHcCCEEEEEe
Confidence 467777777764 45554 999999999999999998 8999997755443321 2 345577899999999
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHH------cCcEEEEeCCCc-C-
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAE------KGWHVLLDATAL-G- 323 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~------~g~~vvvDaa~~-~- 323 (588)
.+..++.+|.++++++++ +++++|++++++|+||..+|.+++ ++|++ +|+++|+|.+.. +
T Consensus 149 ~~~~~~~~d~~~l~~~~~--------~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~ 220 (394)
T PRK06836 149 TDTDTFQPDLDALEAAIT--------PKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIV 220 (394)
T ss_pred cCCccCcCCHHHHHhhcC--------cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccc
Confidence 974446799999999997 679999999999999999997775 56788 899999999832 1
Q ss_pred --CCCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhc--ccCCC-CCCCceEeeecCCCcccccccccccc
Q 037063 324 --SKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASV--LSGST-SSVSTIMGIEPSFSEIIELETLDESS 398 (588)
Q Consensus 324 --~~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~--l~~~~-~g~~g~v~~~~~~~~~~~~~~~~~~~ 398 (588)
+.....+ ++...-.+++.|++|.||.+..++|++++.++..+. +.... ... ... .
T Consensus 221 ~~~~~~~~~-~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~-~~~------------------~ 280 (394)
T PRK06836 221 YDGAEVPYI-FKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALVFAN-RIL------------------G 280 (394)
T ss_pred cCCCCCCCh-HHccCcEEEEecchhhccCcceeeEEEecCHHHhhhHHHHHHHHHHh-hcc------------------c
Confidence 1001111 122224688899999998534569999998765321 11000 000 000 0
Q ss_pred cccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEE
Q 037063 399 QSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAF 478 (588)
Q Consensus 399 f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f 478 (588)
...++++.+ .++... +.. +. ..++.+...+.+.+.|.++ ++++..| .++...+
T Consensus 281 --~~~~~~~~q----~~~~~~---l~~-~~--~~~~~~~~r~~l~~~L~~~----------g~~~~~~-----~gg~~~~ 333 (394)
T PRK06836 281 --FVNAPALMQ----RVVAKC---LDA-TV--DVSIYKRNRDLLYDGLTEL----------GFECVKP-----QGAFYLF 333 (394)
T ss_pred --cccCCHHHH----HHHHHH---hCC-hH--HHHHHHHHHHHHHHHHHhC----------CCEeecC-----CceEEEE
Confidence 000111111 111122 211 11 1233444556666777653 2444433 3444433
Q ss_pred -EeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHH
Q 037063 479 -NVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYR 557 (588)
Q Consensus 479 -~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~ 557 (588)
.++. .+...+...|.++||.+++|..+. . .+ +||++++ .+.++++.
T Consensus 334 ~~~~~-----~~~~~~~~~l~~~gv~v~~g~~f~----------------~--------~~--~iRi~~~--~~~~~~~~ 380 (394)
T PRK06836 334 PKSPE-----EDDVAFCEKAKKHNLLLVPGSGFG----------------C--------PG--YFRLSYC--VDTETIER 380 (394)
T ss_pred EeCCC-----CCHHHHHHHHHhCCEEEECchhcC----------------C--------CC--eEEEEec--CCHHHHHH
Confidence 3332 245667778888999999874331 0 12 8999998 37899999
Q ss_pred HHHHHHHhhhh
Q 037063 558 LWAFVSRFLDA 568 (588)
Q Consensus 558 li~~l~~~l~~ 568 (588)
.++.|+++++.
T Consensus 381 ~i~~l~~~l~~ 391 (394)
T PRK06836 381 SLPAFEKLAKE 391 (394)
T ss_pred HHHHHHHHHHH
Confidence 99999988753
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-17 Score=173.13 Aligned_cols=318 Identities=15% Similarity=0.100 Sum_probs=205.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
+..+++..+.+++++|+. .++.++|+|.|+.+++.++.+++||+|+ ..+.+++ . .......|++++++++
T Consensus 24 g~~~~~fE~~~a~~~g~~----~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~-~----~~ai~~~G~~pv~~Di 94 (363)
T PF01041_consen 24 GPYVEEFEKEFAEYFGVK----YAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPA-T----ASAILWAGAEPVFVDI 94 (363)
T ss_dssp SHHHHHHHHHHHHHHTSS----EEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-TH-H----HHHHHHTT-EEEEE-B
T ss_pred CHHHHHHHHHHHHHhCCC----eEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchH-H----HHHHHHhccEEEEEec
Confidence 467789999999999974 3999999999999999999999999965 5666664 2 2334567999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCC--CCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDM--DTLGLS 333 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~--~~l~l~ 333 (588)
+..++.+|+++++++|+ ++|+.|++.|. -|...++++| ++|+++|+.||.|++|+.+... ..+|
T Consensus 95 ~~~~~~id~~~~~~~i~--------~~t~ai~~~h~---~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G-- 161 (363)
T PF01041_consen 95 DPETLNIDPEALEKAIT--------PKTKAILVVHL---FGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVG-- 161 (363)
T ss_dssp ETTTSSB-HHHHHHHHH--------TTEEEEEEE-G---GGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETT--
T ss_pred cCCcCCcCHHHHHHHhc--------cCccEEEEecC---CCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEecc--
Confidence 98899999999999999 88999999987 8999999999 9999999999999999997211 1222
Q ss_pred CCCCcEEEeccC--ccCCCCCCceEEEEEeCcc-hhcccCCCCCCCceEeeecCCCcccccccccccccc-c--CC-CCC
Q 037063 334 LFKPDFLICSFY--KIFGENPSGFGCLFVKKSS-ASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS-K--FP-ESS 406 (588)
Q Consensus 334 ~~~~D~vv~S~~--K~~G~~P~G~G~L~v~~~~-~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~-e--~G-T~~ 406 (588)
.+ -|+.++||| |.+.. . ..|+++++++. .++++..... |.... .. .++. + .| ...
T Consensus 162 ~~-gd~~~fSf~~~K~i~~-g-eGG~v~~~~~~~~~~~~~~~~~--g~~~~-~~------------~~~~~~~~~g~n~r 223 (363)
T PF01041_consen 162 SF-GDIAIFSFHPTKIITT-G-EGGAVVTNDPELAERARALRNH--GRSRD-AF------------RRYRHELPPGYNFR 223 (363)
T ss_dssp SS-SSEEEEESSTTSSS-S-S-S-EEEEESTHHHHHHHHHHTBT--TEETS-EC------------STTEESSSS--B-B
T ss_pred CC-CCceEecCCCCCCCcC-C-CCeeEEecHHHHHHHhhhhhcc--CcCcc-cc------------ccccccccCCcccc
Confidence 11 399999997 77653 2 35888888754 3445433222 21100 00 0110 0 11 112
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc--EEEEEeecCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP--SLAFNVFDWN 484 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~--iv~f~~~~~~ 484 (588)
+..+ ....++..+++ ++.+.++.+++++++.+.|.++ +++..........+.. .+.+.+.+..
T Consensus 224 m~~~----~AAigl~QL~~--L~~~~~~R~~~a~~y~~~L~~~---------~~~~~~~~~~~~~~~~~~~f~i~~~~~~ 288 (363)
T PF01041_consen 224 MSEL----QAAIGLAQLKR--LDEIIARRRENAQRYREALAGI---------PGIKPPPIPDGAERSSYYRFPIRLPDEA 288 (363)
T ss_dssp -BHH----HHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHTTG---------TTEEEEGCGTTTEEBCESSEEEEETCCG
T ss_pred cHHH----HHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcC---------CCcccccccccccccccccccccccccc
Confidence 2222 22345666666 4888888899999999999985 5665544322111122 3444444421
Q ss_pred CCCcCHHHHHHHHHhCCcEeccccc--cC--cccccch-----HHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHH
Q 037063 485 GTRIDPALVQKLADRHNISLSCGFL--QN--IFFSGEY-----EQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDT 555 (588)
Q Consensus 485 g~~i~~~~v~~~l~~~gI~v~~G~~--c~--~~~~~~~-----~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv 555 (588)
. .+.+.+.+.|.+.||.++.... .+ +.+.... .-..+..+.++ .+.+.++...+.+||
T Consensus 289 ~--~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r-----------~l~LP~~~~lt~edv 355 (363)
T PF01041_consen 289 L--ADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQR-----------LLSLPIHPRLTEEDV 355 (363)
T ss_dssp C--STHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHH-----------EEEEEHSTTSCHHHH
T ss_pred c--chHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhC-----------eEECcCCCCCCHHHH
Confidence 1 3578899999999999887641 11 1111100 00122223332 899999999999999
Q ss_pred HHHHHHHH
Q 037063 556 YRLWAFVS 563 (588)
Q Consensus 556 ~~li~~l~ 563 (588)
+++++.|+
T Consensus 356 ~~I~~~ir 363 (363)
T PF01041_consen 356 DYIAEAIR 363 (363)
T ss_dssp HHHHHHHH
T ss_pred HHHhhccC
Confidence 99999875
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=174.58 Aligned_cols=304 Identities=16% Similarity=0.118 Sum_probs=213.0
Q ss_pred cccccCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcC
Q 037063 169 SWLQYGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRG 248 (588)
Q Consensus 169 s~~~~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G 248 (588)
++...|. .++..++.+.+|+|+|.+ ..++|++|-...+.++ .++ .+++|-|+++...|++.+.+ ++..+
T Consensus 76 sR~i~G~--~~~h~~LE~~lA~f~g~e---~al~f~SGy~AN~~~i-~~l-~~~~dli~~D~lnHASiidG----~rls~ 144 (388)
T COG0156 76 SRLISGT--SDLHVELEEELADFLGAE---AALLFSSGFVANLGLL-SAL-LKKGDLIFSDELNHASIIDG----IRLSR 144 (388)
T ss_pred cCcccCC--cHHHHHHHHHHHHHhCCC---cEEEEcccchhHHHHH-HHh-cCCCcEEEEechhhhhHHHH----HHhCC
Confidence 3444454 578889999999999995 3599999988765544 566 67788888887777655444 45568
Q ss_pred CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC--
Q 037063 249 ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK-- 325 (588)
Q Consensus 249 ~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~-- 325 (588)
++++.... .|+++|+++|.+.+ .... +.++|++..+.++.|.+.|+.+| ++++++|++++||.++++|+
T Consensus 145 a~~~~f~H------nD~~~Le~~l~~~~-~~~~-~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G 216 (388)
T COG0156 145 AEVRRFKH------NDLDHLEALLEEAR-ENGA-RRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLG 216 (388)
T ss_pred CcEEEecC------CCHHHHHHHHHhhh-ccCC-CceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccC
Confidence 88887765 37899999997310 1112 58999999999999999999999 99999999999999998862
Q ss_pred -----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccc
Q 037063 326 -----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS 400 (588)
Q Consensus 326 -----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~ 400 (588)
-++.+++....+|+++.++.|.|| -.| |++.....+++.|.....+ . .|
T Consensus 217 ~~GrG~~e~~g~~~~~vdi~~gTlsKAlG--s~G-g~v~g~~~~~d~L~~~ar~---~-------------------if- 270 (388)
T COG0156 217 PNGRGLAEHFGLEPEEVDIIVGTLGKALG--SSG-GYIAGSAALIDYLRNRARP---F-------------------IF- 270 (388)
T ss_pred CCCccHHHHhCCCCccceEEEEEchhhhc--ccC-ceeeCcHHHHHHHHHhCCc---e-------------------ec-
Confidence 123455555557999999999999 333 7777777777655433211 0 22
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEe
Q 037063 401 KFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNV 480 (588)
Q Consensus 401 e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~ 480 (588)
..+-|+.. .++...+|+.+.+. ....++++.+..+++..++.+ ++.+ .+ ...+|+.+.+
T Consensus 271 StalpP~~----aaa~~~al~~l~~~--~~~r~~L~~~~~~~~~~~~~~----------~~~~-~~----s~s~I~pv~~ 329 (388)
T COG0156 271 STALPPAV----AAAALAALRILEEG--PERRERLQELAAFFRSLLKAL----------GLVL-LP----SESPIIPVIL 329 (388)
T ss_pred cCCCCHHH----HHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHhc----------CCcc-CC----CCCCeeeeEe
Confidence 11112222 24666888888764 677888889999988666553 1211 22 3468988888
Q ss_pred ecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHH
Q 037063 481 FDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 481 ~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~ 560 (588)
.+.. ....+...+.+.||.+..... |- . ..|...+|+++...+|.+||+++++
T Consensus 330 gd~~----~a~~~s~~l~~~Gi~v~~i~~--PT-------------V--------p~gtarlRi~lta~ht~~~I~~l~~ 382 (388)
T COG0156 330 GDEE----RALEASRALLEEGIYVSAIRP--PT-------------V--------PKGTARLRITLTAAHTEEDIDRLAE 382 (388)
T ss_pred CCHH----HHHHHHHHHHHCCeeEeeecC--CC-------------C--------CCCcceEEEEecCCCCHHHHHHHHH
Confidence 7632 133444445555999875422 10 0 1344589999999999999999999
Q ss_pred HHHHh
Q 037063 561 FVSRF 565 (588)
Q Consensus 561 ~l~~~ 565 (588)
++.+.
T Consensus 383 ~l~~~ 387 (388)
T COG0156 383 ALSEV 387 (388)
T ss_pred HHHhh
Confidence 98764
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-18 Score=183.27 Aligned_cols=168 Identities=11% Similarity=0.027 Sum_probs=131.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
...++++++++++++|++ .+++++|+|+|+.+++.++ +++||+|++ ...|.. ....+...++..|+++++++.
T Consensus 64 ~pt~~~Le~~lA~l~g~~----~~l~~~sgt~Ai~~~l~al-~~~GD~Vl~~~~~y~~-~~~~~~~~~~~~Gi~v~~vd~ 137 (394)
T PRK07050 64 TPTSLALAQRLAEIEGGR----HALLQPSGLAAISLVYFGL-VKAGDDVLIPDNAYGP-NRDHGEWLARDFGITVRFYDP 137 (394)
T ss_pred CHHHHHHHHHHHHHhCCC----eEEEeccHHHHHHHHHHHH-hCCCCEEEEecCCccc-HHHHHHHHHHhcCeEEEEECC
Confidence 445679999999999973 3999999999999999999 899999765 445544 333334566788999998864
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
. +.++++++|+ ++|++|++.+++|++|...++++| ++|+++|++|++|+++..|....++.+
T Consensus 138 ~------~~~~l~~~i~--------~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~--- 200 (394)
T PRK07050 138 L------IGAGIADLIQ--------PNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEH--- 200 (394)
T ss_pred C------CHHHHHHhcC--------CCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccccCHHHc---
Confidence 3 3467888887 789999999999999999999999 999999999999999888743444432
Q ss_pred CCcEEEeccCccCCCCCCc--eEEEEEeC-cchhccc
Q 037063 336 KPDFLICSFYKIFGENPSG--FGCLFVKK-SSASVLS 369 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G--~G~L~v~~-~~~~~l~ 369 (588)
++|+++.|++|+++. ..+ .|++++++ +++++++
T Consensus 201 GaDi~v~S~tK~~~g-~~~~~gG~v~~~~~~~~~~~~ 236 (394)
T PRK07050 201 GVDISVQALTKYQSG-GSDVLMGATITADAELHAKLK 236 (394)
T ss_pred CCeEEEEECCceecC-CCCeeEEEEEECCHHHHHHHH
Confidence 389999999997762 223 56666654 4545443
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-17 Score=179.01 Aligned_cols=294 Identities=15% Similarity=0.049 Sum_probs=192.9
Q ss_pred HHHHHHHHHHhCC--CCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCC
Q 037063 182 SKIRKRIMDFMNI--SEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWP 259 (588)
Q Consensus 182 ~~~r~~ia~~lga--~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~ 259 (588)
.++|+.++++++. .++ .+|++|+|+++|+.+++.++ .++||.|++....+.. ....++..|++++.++++ +
T Consensus 124 ~~lr~~ia~~~~~~~~~~-~~Iiit~G~~~al~~~~~~l-~~pgd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~-~ 196 (431)
T PRK15481 124 PELHAWAARWLRDDCPVA-FEIDLTSGAIDAIERLLCAH-LLPGDSVAVEDPCFLS----SINMLRYAGFSASPVSVD-A 196 (431)
T ss_pred HHHHHHHHHHHhhccCCc-CeEEEecCcHHHHHHHHHHh-CCCCCEEEEeCCCcHH----HHHHHHHcCCeEEeeccC-C
Confidence 3688888888763 322 35999999999999999999 8999998776655432 245667789999999996 4
Q ss_pred CCccCHHHHHHHHhhhccccCCCcceEEEEe-CCCCCCCccCCHH---HH-HHHHHc-CcEEEEeCCCc--CCCC-CCCC
Q 037063 260 NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFP-LQSKVTGARYSYM---WM-SVAAEK-GWHVLLDATAL--GSKD-MDTL 330 (588)
Q Consensus 260 ~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~-~~sn~tG~~~pl~---~I-~~a~~~-g~~vvvDaa~~--~~~d-~~~l 330 (588)
++ ++.++|+++++ ++++++++. .++||||..++.+ +| ++|+++ +++||+|.+.. .... ...+
T Consensus 197 ~g-~~~~~l~~~~~--------~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~ 267 (431)
T PRK15481 197 EG-MQPEKLERALA--------QGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVI 267 (431)
T ss_pred CC-CCHHHHHHHHh--------cCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCC
Confidence 44 89999999987 567777765 9999999999997 56 889999 99999999732 1100 1112
Q ss_pred CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 331 GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
.. ..+--+++.||+|.|| +..++|+++.++++++.+....... ..+++.+.+
T Consensus 268 ~~-~~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~~~~~~~~~~~~-------------------------~~~~s~~~q- 319 (431)
T PRK15481 268 PQ-TTQRWALIRSVSKALG-PDLRLAFVASDSATSARLRLRLNSG-------------------------TQWVSHLLQ- 319 (431)
T ss_pred cC-CCCCEEEEeeeccccC-CCceeEEEeCCHHHHHHHHHHHhcc-------------------------ccCCCHHHH-
Confidence 11 1223588899999999 4678999999888776664221100 000111111
Q ss_pred hhHHHHHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 411 SSKLVECKGLDH--ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 411 ~~~~al~~aL~~--l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
.++..+|+. +.+. +++..+..+...+++.+.|.++ ++++..| ..|..+-+.+.+
T Consensus 320 ---~a~~~~l~~~~~~~~-l~~~~~~~~~~r~~~~~~L~~~----------~~~~~~p----~gg~f~~~~l~~------ 375 (431)
T PRK15481 320 ---DLVYACLTDPEYQAR-LAQARLFYAQRRQKLARALQQY----------GIAIPSP----GDGLNLWLPLDT------ 375 (431)
T ss_pred ---HHHHHHHhCccHHHH-HHHHHHHHHHHHHHHHHHHHHc----------CCccccC----CCeEEEEEECCC------
Confidence 222333321 0110 3455666667777777877763 2232222 123333334432
Q ss_pred CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 489 DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 489 ~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
+...+.+.|.++||.+..|..+... .+..++|+|++.. +.++++++++.|++.++
T Consensus 376 ~~~~~~~~l~~~gV~v~pg~~f~~~-----------------------~~~~~iRis~~~~-~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 376 DSQATALTLAKSGWLVREGEAFGVS-----------------------APSHGLRITLSTL-NDAEINRLAADLHQALN 430 (431)
T ss_pred CHHHHHHHHHHCCcEEecCCccccC-----------------------CCCCeEEEEcCCC-ChHHHHHHHHHHHHHhc
Confidence 2455666677899999988543100 1112899999875 47999999999988764
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-17 Score=176.70 Aligned_cols=305 Identities=12% Similarity=0.037 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHhCCCCCC-ceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDD-YTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e-~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++.+.+.+.+.+.+|.+.+. ..|++|+|+++|+.+++.++ .++||+|++....+... ...++..|++++.++.+
T Consensus 65 ~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~-~~~gd~vli~~p~y~~~----~~~~~~~g~~~~~~~~~ 139 (387)
T PRK07777 65 ELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGL-VEPGDEVLLIEPYYDSY----AAVIAMAGAHRVPVPLV 139 (387)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchhh----HHHHHHCCCEEEEeecC
Confidence 34444444444456765322 24999999999999999998 78999976544433212 34456679999999886
Q ss_pred CC--CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCCCcC----CCCC
Q 037063 258 WP--NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYM---WM-SVAAEKGWHVLLDATALG----SKDM 327 (588)
Q Consensus 258 ~~--~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa~~~----~~d~ 327 (588)
.. ++.+|+++|++++. +++++|++++++|+||..++.+ +| ++|+++|+++|+|.+... +...
T Consensus 140 ~~~~~~~~d~~~l~~~~~--------~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~ 211 (387)
T PRK07777 140 PDGRGFALDLDALRAAVT--------PRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARH 211 (387)
T ss_pred CccCCCcCCHHHHHHhcC--------cccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCc
Confidence 32 34589999999887 6789999999999999999844 46 889999999999998432 1000
Q ss_pred CCCC-CC-CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 328 DTLG-LS-LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 328 ~~l~-l~-~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
.++. +. ....++++.|++|.||.+..++|++++++++++.+....... . + ...
T Consensus 212 ~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~~~~~~~~~-~---------------------~---~~~ 266 (387)
T PRK07777 212 LPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAPLIAAVRAAKQYL-T---------------------Y---VGG 266 (387)
T ss_pred ccHhhCCCCcCcEEEEeechhhccCcCceeEEEecCHHHHHHHHHHHhhc-c---------------------c---CCC
Confidence 1111 11 123578999999999853445899999888776554322100 0 0 001
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEE-EeecCC
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAF-NVFDWN 484 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f-~~~~~~ 484 (588)
...+ .++..+++..++. ++.+.+++++.++++.+.|.++ +++++.| .++.+.+ .+...
T Consensus 267 ~~~q----~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~~----------~~~~~~~-----~g~~~~~~~~~~~- 325 (387)
T PRK07777 267 APFQ----PAVAHALDHEDAW-VAALRDSLQAKRDRLAAGLAEA----------GFEVHDS-----AGTYFLCADPRPL- 325 (387)
T ss_pred CHHH----HHHHHHHhCCcHH-HHHHHHHHHHHHHHHHHHHHhC----------CCCccCC-----CcceEEEeccccc-
Confidence 1111 1222333321121 4556677777888888888774 2444433 2443333 43321
Q ss_pred CCCcCHHHHHHHH-HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 485 GTRIDPALVQKLA-DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 485 g~~i~~~~v~~~l-~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
+. .+...+.+.| +++||.|.+|...... . ..+...||+|++. ..++++..++.|+
T Consensus 326 ~~-~~~~~~~~~l~~~~gv~v~pg~~f~~~--------------~-------~~~~~~~Ri~~~~--~~~~l~~~l~~l~ 381 (387)
T PRK07777 326 GY-DDGTEFCRALPERVGVAAIPMSVFYDP--------------A-------DAWNHLVRFAFCK--RDDTLDEAIRRLR 381 (387)
T ss_pred CC-CCHHHHHHHHHHhCCEEEeCchHhCCC--------------C-------cCCCCeEEEEecC--CHHHHHHHHHHHH
Confidence 11 2345555544 6789999988432100 0 0122389999974 6899999999888
Q ss_pred Hhh
Q 037063 564 RFL 566 (588)
Q Consensus 564 ~~l 566 (588)
++.
T Consensus 382 ~~~ 384 (387)
T PRK07777 382 ALR 384 (387)
T ss_pred HHh
Confidence 764
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=176.88 Aligned_cols=289 Identities=15% Similarity=0.149 Sum_probs=188.0
Q ss_pred HHHHHHHHHHhC--------CCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEEEcCCCchhHHHHHHHHHHhcCCEEE
Q 037063 182 SKIRKRIMDFMN--------ISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLLTVYDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 182 ~~~r~~ia~~lg--------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll~~~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
.++|+.|+++++ +++++ |++|+|+++++.+++.++ ..+|+ +|++....+. .....++..|++++
T Consensus 69 ~~Lr~aia~~~~~~~~~~~~v~~~~--I~it~Ga~~al~~~~~~~-~~~g~~~Vlv~~P~y~----~~~~~~~~~g~~~~ 141 (374)
T PRK02610 69 EALKQAIAEYVNESAAGSSQITPAN--ISVGNGSDELIRSLLIAT-CLGGEGSILVAEPTFS----MYGILAQTLGIPVV 141 (374)
T ss_pred HHHHHHHHHHhCccccccCCCCHHH--EEEcCChHHHHHHHHHHH-cCCCCCeEEEcCCChH----HHHHHHHHcCCEEE
Confidence 478899999987 66554 999999999999877776 55675 6776555433 22456678899999
Q ss_pred EEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHH-HcCcEEEEeCCCc--CCCC-C
Q 037063 253 SAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAA-EKGWHVLLDATAL--GSKD-M 327 (588)
Q Consensus 253 ~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~-~~g~~vvvDaa~~--~~~d-~ 327 (588)
.++.+..+..+++++|++++.+ ...+++++|+++.++||||..++.+++ ++++ .+++++|+|.+-. .... +
T Consensus 142 ~~~~~~~~~~~d~~~l~~~~~~----~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~ 217 (374)
T PRK02610 142 RVGRDPETFEIDLAAAQSAIEQ----TQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLV 217 (374)
T ss_pred EecCCcccCCCCHHHHHHHHHh----hcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccchH
Confidence 9998633567999999998861 111478999999999999999999998 4432 2489999999832 1100 1
Q ss_pred CCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCc
Q 037063 328 DTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407 (588)
Q Consensus 328 ~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~ 407 (588)
.. +...+--+++.||.|.||.+..++|+++.++++++.+......+ + ++.+
T Consensus 218 ~~--~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~~~~-~--------------------------~~~~ 268 (374)
T PRK02610 218 GE--LAQHPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVRLPY-N--------------------------LPSF 268 (374)
T ss_pred HH--HhcCCCEEEEEecchhccCcccceeeeecCHHHHHHHHHhcCCC-C--------------------------CCHH
Confidence 11 11111236788999999865677999999888877664332110 0 0111
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTR 487 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~ 487 (588)
.+ .+...+++..+.. ++.+.+.. +.++.+.+.|+++ +++.++ | ..+..+-+.+.+ +
T Consensus 269 ~q----~a~~~~l~~~~~~-~~~~~~~~-~~r~~l~~~L~~~---------~~~~~~-p----~~g~f~~~~l~~--~-- 324 (374)
T PRK02610 269 SQ----LAAQLALEHRQEL-LAAIPEIL-QERDRLYQALQEL---------PQLRVW-P----SAANFLYLRLSQ--D-- 324 (374)
T ss_pred HH----HHHHHHhcCHHHH-HHHHHHHH-HHHHHHHHHHHhC---------CCcEeC-C----CcceEEEEeCCC--C--
Confidence 11 2223444432221 22233222 2355666777653 345543 3 234444444432 1
Q ss_pred cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 488 IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 488 i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
++...+.+.|.++||.++.+ .+ .||+|++ +.++++++++.|+++++
T Consensus 325 ~~~~~~~~~l~~~gi~v~~~-----------------------------~~--~lRls~~---~~~~~~~~l~~l~~~l~ 370 (374)
T PRK02610 325 AALAALHQALKAQGTLVRHT-----------------------------GG--GLRITIG---TPEENQRTLERLQAALT 370 (374)
T ss_pred CCHHHHHHHHHHCCEEEEeC-----------------------------CC--eEEEeCC---CHHHHHHHHHHHHHHHh
Confidence 45677777788899998642 12 8999987 46889999999998875
Q ss_pred h
Q 037063 568 A 568 (588)
Q Consensus 568 ~ 568 (588)
+
T Consensus 371 ~ 371 (374)
T PRK02610 371 Q 371 (374)
T ss_pred h
Confidence 4
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-19 Score=181.20 Aligned_cols=224 Identities=12% Similarity=-0.002 Sum_probs=164.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcC-CCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVY-DHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~-e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
...++++++.+|+++|++ +.+++|+|+|+|+..++.++ +++||+|++.. .|.+ .+.. +...|+++++++.
T Consensus 58 ~g~i~~~~~~~A~~~ga~---~~~~~~~Gst~a~~~~l~al-~~~gd~Vlv~~~~h~s-~~~~----~~~~g~~~~~v~~ 128 (294)
T cd00615 58 TGPIKEAQELAARAFGAK---HTFFLVNGTSSSNKAVILAV-CGPGDKILIDRNCHKS-VING----LVLSGAVPVYLKP 128 (294)
T ss_pred ChHHHHHHHHHHHHhCCC---CEEEEcCcHHHHHHHHHHHc-CCCCCEEEEeCCchHH-HHHH----HHHCCCEEEEecC
Confidence 456889999999999985 34666999999999999999 89999977654 4544 3322 3457999999987
Q ss_pred cCCC-----CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC---CC
Q 037063 257 AWPN-----LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK---DM 327 (588)
Q Consensus 257 ~~~~-----~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~---d~ 327 (588)
++.. +.++++++++++++ .+++++|+++++ |++|..+|+++| ++|+++|++++||+++.... ..
T Consensus 129 ~~~~~~~~~~~i~~~~l~~~l~~------~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~ 201 (294)
T cd00615 129 ERNPYYGIAGGIPPETFKKALIE------HPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPI 201 (294)
T ss_pred ccCcccCcCCCCCHHHHHHHHHh------CCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcc
Confidence 5332 36899999999972 146899999986 789999999999 99999999999999976421 01
Q ss_pred CCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchh--cccCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 328 DTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSAS--VLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 328 ~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~--~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
.+......++|+++.|+||+++. +++.|+++++++... ++.... ..| +.+++
T Consensus 202 ~~~~~~~~~~div~~S~hK~l~g-~~~~~~l~~~~~~~~~~~~~~~~------------------------~~~-~ttsp 255 (294)
T cd00615 202 LPSSAAMAGADIVVQSTHKTLPA-LTQGSMIHVKGDLVNPDRVNEAL------------------------NLH-QSTSP 255 (294)
T ss_pred cCcchhhcCCcEEEEchhcccch-HhHHHHHHhCCCcCCHHHHHHHH------------------------HHH-CCCCc
Confidence 12222234599999999998763 777888888775321 111000 033 56677
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALM 447 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~ 447 (588)
++..+ +++..+++++...|.+ ..++..+++++++++|.
T Consensus 256 s~~~~---asl~~a~~~~~~~g~~-~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 256 SYLIL---ASLDVARAMMALEGKE-LVEELIELALYARQEIN 293 (294)
T ss_pred HHHHH---HHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHh
Confidence 77765 7888999988777744 56777888888888765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=179.13 Aligned_cols=306 Identities=13% Similarity=0.063 Sum_probs=192.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
.++.+.+.+.+.+.+|.+-+..+|++|+|+++|+.+++.++ +++||.|+++...+..+.. .....|++++.++.+
T Consensus 73 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~-~~~gd~vl~~~p~y~~y~~----~~~~~~~~~~~v~~~ 147 (402)
T PRK06107 73 PALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMAT-LEAGDEVIIPAPYWVSYPD----MVLANDGTPVIVACP 147 (402)
T ss_pred HHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHh-cCCCCEEEEecCCCcCHHH----HHHHcCCEEEEecCC
Confidence 35666777777777777433345999999999999999988 8999997765443322222 224457788888875
Q ss_pred C-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHc-CcEEEEeCCCcC----C---
Q 037063 258 W-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEK-GWHVLLDATALG----S--- 324 (588)
Q Consensus 258 ~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~-g~~vvvDaa~~~----~--- 324 (588)
. .++.++.+++++++. ++++++++++++|+||..+|.+++ ++|+++ |+++|+|.+-.- +
T Consensus 148 ~~~~~~~~~~~l~~~~~--------~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~ 219 (402)
T PRK06107 148 EEQGFKLTPEALEAAIT--------PRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPT 219 (402)
T ss_pred cccCCCCCHHHHHhhcC--------cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCC
Confidence 2 234688899998887 678999999999999999998664 668887 999999987321 1
Q ss_pred CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 325 KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 325 ~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
..+..++-.....-+++.|++|.||.+..++|+++.++++++.+....... ..+.
T Consensus 220 ~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~-------------------------~~~~ 274 (402)
T PRK06107 220 PHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINKLQSQS-------------------------SSCP 274 (402)
T ss_pred CCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCHHHHHHHHHHHHhc-------------------------ccCC
Confidence 011111101111357788999998843455799999888877665432110 0011
Q ss_pred CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEE-Eeec-
Q 037063 405 SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAF-NVFD- 482 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f-~~~~- 482 (588)
..+.+ +++..+|+.-... ++...++.++.++.+++.|.++ +++.+..| .++...+ .+..
T Consensus 275 s~~~q----~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~L~~~---------~g~~~~~p-----~gg~~~~~~~~~~ 335 (402)
T PRK06107 275 SSISQ----AAAAAALNGDQSF-VTESVAVYKQRRDYALALLNAI---------PGLSCLVP-----DGAFYLYVNCAGL 335 (402)
T ss_pred ChHHH----HHHHHHhcCChHH-HHHHHHHHHHHHHHHHHHHhcC---------CCCcccCC-----CcceEEeeecccc
Confidence 11111 2223333210111 3455556666677777877663 34554433 2444333 2311
Q ss_pred -----CCCCC-cCH-HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHH
Q 037063 483 -----WNGTR-IDP-ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDT 555 (588)
Q Consensus 483 -----~~g~~-i~~-~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv 555 (588)
..+.. .+. +.+.++++++||.+.+|.... .. ++||+|++. +.|++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg------------------------~~--~~iRis~~~--~~e~l 387 (402)
T PRK06107 336 IGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYG------------------------LS--PYFRLSIAT--SLETL 387 (402)
T ss_pred cccccccccCCCCHHHHHHHHHHhCCEEEeCccccC------------------------CC--CeEEEEeCC--CHHHH
Confidence 11111 133 345678889999999884321 01 289999984 79999
Q ss_pred HHHHHHHHHhhhh
Q 037063 556 YRLWAFVSRFLDA 568 (588)
Q Consensus 556 ~~li~~l~~~l~~ 568 (588)
++.++.|.+++++
T Consensus 388 ~~~l~~l~~~l~~ 400 (402)
T PRK06107 388 EEACARIERAVAA 400 (402)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.7e-18 Score=179.07 Aligned_cols=303 Identities=12% Similarity=0.077 Sum_probs=195.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCC-ceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDD-YTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e-~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++.+.+.+.+.++++.+.+. .+|++|+|+++|+.+++.++ +.+||+|+.....+... ...++..|++++.++.
T Consensus 70 ~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~-~~~gd~Vli~~p~y~~~----~~~~~~~g~~~~~~~~ 144 (386)
T PRK09082 70 AALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILAL-VRPGDEVIVFDPSYDSY----APAIELAGGRAVRVAL 144 (386)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHH-cCCCCEEEEeCCCchhh----HHHHHHcCCEEEEEec
Confidence 456677777887888876433 25999999999999999998 89999977655444323 3344567999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC----CC-CC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG----SK-DM 327 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~----~~-d~ 327 (588)
+..++.+|++++++++. +++++|++++++|+||..++.++ | ++|+++|+++|+|.+..- +. ..
T Consensus 145 ~~~~~~~d~~~l~~~~~--------~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~ 216 (386)
T PRK09082 145 QPPDFRVDWQRFAAAIS--------PRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHA 216 (386)
T ss_pred CcccccCCHHHHHHhcC--------ccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCC
Confidence 74567899999999987 67899999999999999987554 5 889999999999998421 10 01
Q ss_pred CCCCCC-CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 328 DTLGLS-LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 328 ~~l~l~-~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
.-..+. .....+++.|++|.+|.+..++|+++.++++++.+....... ..+.+.
T Consensus 217 s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~~~~~~~~~~-------------------------~~~~~~ 271 (386)
T PRK09082 217 SVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAALSAEFRKVHQYN-------------------------TFTVNT 271 (386)
T ss_pred ChhhCcCccCcEEEEeechhhccchhhhhhhhhCCHHHHHHHHHHHhhh-------------------------cCCCCh
Confidence 111111 123568889999999853445899999888776654432100 001111
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE-EEEEeecCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS-LAFNVFDWNG 485 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i-v~f~~~~~~g 485 (588)
+.+ .++...++...+. ++++.+..++.++++.+.|.++ +++++.+ .|+. +-+.+++..+
T Consensus 272 ~~q----~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~L~~~----------~~~~~~~-----~g~~~~~~~~~~~~~ 331 (386)
T PRK09082 272 PAQ----LALADYLRAEPEH-YLELPAFYQAKRDRFRAALANS----------RFKLLPC-----EGTYFQLVDYSAISD 331 (386)
T ss_pred HHH----HHHHHHHhCChHH-HHHHHHHHHHHHHHHHHHHHhC----------CCcccCC-----CeeEEEEEeccccCC
Confidence 111 1222333211111 3445566667777788888763 2444322 3443 3345543111
Q ss_pred CCcCHHHHHH-HHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 486 TRIDPALVQK-LADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 486 ~~i~~~~v~~-~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
++..++.+ +++++||.+.+|.... .. ..+.+++|+|++. +.++++..++.|++
T Consensus 332 --~~~~~~~~~l~~~~~v~v~pg~~f~----------------~~------~~~~~~~Ri~~~~--~~~~l~~~~~rl~~ 385 (386)
T PRK09082 332 --LDDVEFCQWLTREHGVAAIPLSVFY----------------AD------PFPHRLVRLCFAK--QEETLDAAAERLCQ 385 (386)
T ss_pred --CCHHHHHHHHHHhCCEEEeCcHHhC----------------CC------CCCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence 34555544 5688999998874210 00 0222389999985 67888888887764
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=177.31 Aligned_cols=299 Identities=17% Similarity=0.142 Sum_probs=187.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....++++++++++.|++. .++++|+++|+.++. ++ +++||+|++ ...|++ ....+...++..|++++.++.
T Consensus 51 ~pt~~~le~~la~l~g~~~----~~~~~sG~~ai~~~~-~l-l~~Gd~Vl~~~~~y~~-t~~~~~~~~~~~G~~v~~vd~ 123 (366)
T PRK08247 51 NPTRGVLEQAIADLEGGDQ----GFACSSGMAAIQLVM-SL-FRSGDELIVSSDLYGG-TYRLFEEHWKKWNVRFVYVNT 123 (366)
T ss_pred CchHHHHHHHHHHHhCCCc----EEEEcCHHHHHHHHH-HH-hCCCCEEEEecCCcCc-HHHHHHHHhhccCceEEEECC
Confidence 3456799999999999952 466777889999876 45 789999664 445554 333335566778999998875
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
. |+++++++++ ++|++|.+..++||+|...++++| ++|+++|+++|+|.+...+....++. .
T Consensus 124 ~------d~~~l~~~i~--------~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~~---~ 186 (366)
T PRK08247 124 A------SLKAIEQAIT--------PNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLE---E 186 (366)
T ss_pred C------CHHHHHHhcc--------cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCchh---c
Confidence 2 7889999887 689999999999999999999999 99999999999999976663223332 3
Q ss_pred CCcEEEeccCccCCCCCCc--eEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhh
Q 037063 336 KPDFLICSFYKIFGENPSG--FGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSS 412 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G--~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~ 412 (588)
++|+++.|++|+++. +.+ .|+++.+ +++.+.+....... +. ...++.+
T Consensus 187 g~di~i~S~sK~~~g-~~d~~~G~iv~~~~~l~~~~~~~~~~~-g~------------------------~~s~~~a--- 237 (366)
T PRK08247 187 GADIVIHSATKYLGG-HNDVLAGLVVAKGQELCERLAYYQNAA-GA------------------------VLSPFDS--- 237 (366)
T ss_pred CCcEEEeecceeccC-CCceeeeEEecChHHHHHHHHHHHHhc-CC------------------------CCChHHH---
Confidence 489999999998872 333 5666665 34444443221110 00 0001111
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEE-EeCCCCCCCcccEEEEEeecCCCCCcCHH
Q 037063 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVR-IYGPKVMFDRGPSLAFNVFDWNGTRIDPA 491 (588)
Q Consensus 413 ~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~-i~~p~~~~~rg~iv~f~~~~~~g~~i~~~ 491 (588)
..+..+++. +....++.++.++.+.+.|++. |.+. ++.| ..|++++|.+.+ .+
T Consensus 238 -~l~~~~l~t-----l~~r~~~~~~~a~~l~~~L~~~---------p~v~~v~~P----~~gg~~sf~~~~-------~~ 291 (366)
T PRK08247 238 -WLLIRGMKT-----LALRMRQHEENAKAIAAFLNEQ---------PGVTDVLYP----GRGGMLSFRLQD-------EE 291 (366)
T ss_pred -HHHHhccCc-----HHHHHHHHHHHHHHHHHHHHhC---------CCeeEEecC----CcCcEEEEEECC-------HH
Confidence 112234432 2334445567777777778763 5554 4444 258899997643 33
Q ss_pred HHHHHHHhCCc---Eecccc----ccCcccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCCCCCHHHHHHHHHHH
Q 037063 492 LVQKLADRHNI---SLSCGF----LQNIFFSGEYEQERVRVLETRSGTNETRSGV--SVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 492 ~v~~~l~~~gI---~v~~G~----~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~~t~eDv~~li~~l 562 (588)
...++++...+ ..+-|. .+.|+....+. ........ .|+ +.||+|.|. ||++.+++-|
T Consensus 292 ~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~--~~~~~r~~-------~gi~~~~~R~svGl----E~~~dl~~dl 358 (366)
T PRK08247 292 WVNPFLKSLKLITFAESLGGVESFITYPATQTHAD--IPEEIRIA-------NGVCNRLLRFSVGI----ENVEDLIADL 358 (366)
T ss_pred HHHHHHHcCCcceEccCCCCCceEEECCccccccc--CCHHHHHh-------cCCCCCeEEEEecc----CCHHHHHHHH
Confidence 34455553322 222221 22222111110 00111111 333 389999997 8888888888
Q ss_pred HHhhhh
Q 037063 563 SRFLDA 568 (588)
Q Consensus 563 ~~~l~~ 568 (588)
.+.|++
T Consensus 359 ~~al~~ 364 (366)
T PRK08247 359 KQAFKQ 364 (366)
T ss_pred HHHHhh
Confidence 887764
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-17 Score=178.11 Aligned_cols=297 Identities=13% Similarity=0.078 Sum_probs=192.3
Q ss_pred HHHHHHHHHh----C---CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 183 KIRKRIMDFM----N---ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 183 ~~r~~ia~~l----g---a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
++|+.|++++ | ++++ .+|++|+|+++++.+++..+ +++||+|++....+... ...++..|++++.++
T Consensus 85 ~lr~aia~~~~~~~g~~~~~~~-~~I~it~Gs~~al~~~~~~~-~~~gd~Vlv~~P~y~~~----~~~~~~~g~~v~~v~ 158 (410)
T PRK06290 85 EFKEAAARYMEKVFGVKDIDPV-TEVIHSIGSKPALAMLPSCF-INPGDVTLMTVPGYPVT----GTHTKYYGGEVYNLP 158 (410)
T ss_pred HHHHHHHHHHHHHcCCCcCCCc-ceEEEccCHHHHHHHHHHHh-CCCCCEEEEeCCCCccH----HHHHHHcCCEEEEEe
Confidence 5666666664 5 4443 24999999999999999999 89999977654443312 345677899999999
Q ss_pred ccCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC----C--
Q 037063 256 FAWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG----S-- 324 (588)
Q Consensus 256 ~~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~----~-- 324 (588)
++.+ +..++.+++++.+. +++++|+++.++||||..+|.++ | ++|+++|++||+|.+..- +
T Consensus 159 ~~~~~~~~~d~~~l~~~~~--------~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~ 230 (410)
T PRK06290 159 LLEENNFLPDLDSIPKDIK--------EKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKP 230 (410)
T ss_pred cCCCcCCcCCHHHHHHhhc--------ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCC
Confidence 9732 35578999988887 67899999999999999999765 4 678999999999998322 1
Q ss_pred CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 325 KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 325 ~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
..+..+. .....++++.|+.|.+|.+..++|+++..+++++.+....... ..++
T Consensus 231 ~s~~~~~-~~~~~~I~i~SfSK~~g~~GlRiG~ii~~~~l~~~l~~~~~~~-------------------------~~~~ 284 (410)
T PRK06290 231 LSFLSVP-GAKEVGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFATVKDNN-------------------------DSGQ 284 (410)
T ss_pred cChhcCC-CccccEEEEeechhhcCCchhheEeEEeCHHHHHHHHHHHhcc-------------------------ccCC
Confidence 1111111 1123578999999998854456999999888776554322110 0111
Q ss_pred CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEE-EeecC
Q 037063 405 SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAF-NVFDW 483 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f-~~~~~ 483 (588)
..+.+ .++..+|+.- +. ++++.++.+..++++.+.|.++ ++.++.| .|+++.+ .+++.
T Consensus 285 ~~~~q----~aa~~~l~~~-~~-~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~p-----~g~f~l~v~lp~~ 343 (410)
T PRK06290 285 FIAIQ----KAGIYALDHP-EI-TEKIREKYSRRLDKLVKILNEV----------GFKAEMP-----GGTFYLYVKAPKG 343 (410)
T ss_pred cHHHH----HHHHHHhhCc-HH-HHHHHHHHHHHHHHHHHHHHhC----------CCeecCC-----CeeeEEEEECCCc
Confidence 11111 2223344321 11 4566777777788888888874 2444432 3455544 44321
Q ss_pred C--CC-CcCHHHHHH-HHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecC-CCCCHHHHHHH
Q 037063 484 N--GT-RIDPALVQK-LADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALG-CLTNFEDTYRL 558 (588)
Q Consensus 484 ~--g~-~i~~~~v~~-~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg-~~~t~eDv~~l 558 (588)
. +. ..+...+.. ++++.+|.+.+|..+ . +++||+++ .-.+.|+.+++
T Consensus 344 ~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~--------------------------~--~~lRi~~~~~~~~~~~~~~~ 395 (410)
T PRK06290 344 TKSGIKFENAEEFSQYLIKEKLISTVPWDDA--------------------------G--HFLRFSVTFEAKDEEEEDRI 395 (410)
T ss_pred cccCCCCCCHHHHHHHHHHhCCEEEECCccc--------------------------c--CeEEEEEEcccccccchhHH
Confidence 0 00 023555555 445555555444211 1 28999996 45588999999
Q ss_pred HHHHHHhhhh
Q 037063 559 WAFVSRFLDA 568 (588)
Q Consensus 559 i~~l~~~l~~ 568 (588)
+++|++.|..
T Consensus 396 ~~~l~~~~~~ 405 (410)
T PRK06290 396 LEEIKRRLSD 405 (410)
T ss_pred HHHHHHHHhh
Confidence 9999988765
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.2e-17 Score=173.73 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=130.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....++++++|++++|.+ + .++++++++|+..++.++ +++||+|+ ....|+. ....+...++..|++++.++.
T Consensus 56 ~p~~~~le~~lA~l~g~~--~--~v~~~sG~~Ai~~al~~l-~~~Gd~Vl~~~~~y~~-t~~~~~~~~~~~G~~v~~v~~ 129 (418)
T TIGR01326 56 NPTTDVLEQRIAALEGGV--A--ALAVASGQAAITYAILNL-AQAGDNIVSSSYLYGG-TYNLFKHTLKRLGIEVRFVDP 129 (418)
T ss_pred ChhHHHHHHHHHHHhCCC--e--EEEEccHHHHHHHHHHHH-hCCCCEEEEECCCcHH-HHHHHHHHHHHcCcEEEEECC
Confidence 344579999999999973 2 899999999999999888 89999966 4555554 333345667788999999875
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ |+++++++|+ +++++|++.+++|++|.+.|+++| ++|+++|+++|+|+++..+....++. .
T Consensus 130 ~------d~~~l~~~l~--------~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~~~~l~---~ 192 (418)
T TIGR01326 130 D------DPEEFEKAID--------ENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCRPID---H 192 (418)
T ss_pred C------CHHHHHHhcC--------cCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhcCCchh---c
Confidence 3 7889999887 689999999999999999999999 99999999999999987663233332 3
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEeCc
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVKKS 363 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~~~ 363 (588)
.+|+++.|++|++|.+...+|+++++++
T Consensus 193 g~Divv~S~sK~l~g~G~~lGg~v~~~~ 220 (418)
T TIGR01326 193 GADIVVHSATKYIGGHGTAIGGVIVDGG 220 (418)
T ss_pred CCeEEEECccccccCCccceEEEEEecc
Confidence 4899999999988832233888888654
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-17 Score=176.04 Aligned_cols=301 Identities=17% Similarity=0.092 Sum_probs=194.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....+++.++++++.|++ + .+.+++++.|+.+++.++ +++||+|++...++...+.++...+...|+++++++++
T Consensus 63 ~P~~~~lE~~la~leg~~---~-av~~sSG~aAi~~al~al-l~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~ 137 (384)
T PRK06434 63 NPTVQAFEEKYAVLENAE---H-ALSFSSGMGAITSAILSL-IKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTD 137 (384)
T ss_pred ChhHHHHHHHHHHHhCCC---c-EEEeCCHHHHHHHHHHHH-hCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCC
Confidence 456678899999999984 3 677778889999999999 99999987666655556767667788899999999886
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFK 336 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~ 336 (588)
+. +.+. ++ .+++++|++.+++|+++...|+++| ++||++| ++||+++..|....+++ ..
T Consensus 138 -~~-----~~~~--l~-------~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~pl~---~g 197 (384)
T PRK06434 138 -RL-----NSLD--FD-------PSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQNPLD---LG 197 (384)
T ss_pred -Ch-----hhee--ec-------CCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcccCCchh---cC
Confidence 21 1222 33 1478999999999999999999999 9999998 57799987775445555 34
Q ss_pred CcEEEeccCccCCCCCCc--eEEEEEeCc-chhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhH
Q 037063 337 PDFLICSFYKIFGENPSG--FGCLFVKKS-SASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSK 413 (588)
Q Consensus 337 ~D~vv~S~~K~~G~~P~G--~G~L~v~~~-~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~ 413 (588)
+|++++|.+|+++. +.+ .|+++.+++ +.+++...... .|. ..+ .+
T Consensus 198 aDivv~S~tK~i~G-~~d~~gG~vv~~~~~~~~~~~~~~~~-~G~-------------------------~~~--~~--- 245 (384)
T PRK06434 198 ADVVIHSATKYISG-HSDVVMGVAGTNNKSIFNNLVERRKT-LGS-------------------------NPD--PI--- 245 (384)
T ss_pred CCEEEeecccccCC-CCCceEEEEecCcHHHHHHHHHHHHh-cCC-------------------------CCC--HH---
Confidence 99999999998863 443 566656443 33333311100 010 000 01
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCC------CCCcccEEEEEeecCCCC
Q 037063 414 LVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKV------MFDRGPSLAFNVFDWNGT 486 (588)
Q Consensus 414 ~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~------~~~rg~iv~f~~~~~~g~ 486 (588)
.+ ..++..++. ++.+.+|..+.+..+.+.|... |.| +|+-|.- ...-|++++|.+.+
T Consensus 246 ~A-~l~~~gL~t--L~~R~~r~~~~a~~~a~~L~~~---------p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~---- 309 (384)
T PRK06434 246 QA-YLALRGLKT--LGLRMEKHNKNGMELARFLRDS---------KKISNVYYPDTEIGKKVLRGFGGMLSFELRS---- 309 (384)
T ss_pred HH-HHHHhCCCc--HHHHHHHHHHHHHHHHHHHHcC---------CCccEEECCChHHHHHhcCCCCceEEEEECC----
Confidence 11 122333333 4666777788888888888863 444 4555531 11347899999864
Q ss_pred CcCHHHHHHHHHhCCcE---ecccc----ccCcccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCCCCCHHHHHH
Q 037063 487 RIDPALVQKLADRHNIS---LSCGF----LQNIFFSGEYEQERVRVLETRSGTNETRSGV--SVVTAALGCLTNFEDTYR 557 (588)
Q Consensus 487 ~i~~~~v~~~l~~~gI~---v~~G~----~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~~t~eDv~~ 557 (588)
.+.+.+++++..+. ++-|. .|+|.....+. ..... .. ..|+ +.||+|+|. ||++.
T Consensus 310 ---~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~-~~~e~-~~-------~~gi~~~liRlsvGl----Ed~~d 373 (384)
T PRK06434 310 ---MEDVHKFIRNLEIPMVAASLGGVESLITLPVETSHSS-LSPEE-RE-------RLGISDNLVRFSIGI----EDIDD 373 (384)
T ss_pred ---HHHHHHHHHhCCcceEccCCCCCCeeeECCCcccccc-CCHHH-HH-------hcCCCcCeEEEEeCc----CCHHH
Confidence 44556677665542 33332 12221111000 00000 01 1343 389999997 88999
Q ss_pred HHHHHHHhhh
Q 037063 558 LWAFVSRFLD 567 (588)
Q Consensus 558 li~~l~~~l~ 567 (588)
|++-|.+.|+
T Consensus 374 Li~dl~~Al~ 383 (384)
T PRK06434 374 LIKDIENALS 383 (384)
T ss_pred HHHHHHHHhc
Confidence 9988888775
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-17 Score=176.51 Aligned_cols=309 Identities=13% Similarity=0.099 Sum_probs=188.5
Q ss_pred HHHHHHHHHh----CCCCCCc-eEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 183 KIRKRIMDFM----NISEDDY-TLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 183 ~~r~~ia~~l----ga~~~e~-~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++|+.|++++ |.+.+.. .|++|+|+++|+.+++..+ .++||.|++....+.. ....++..|++++.++++
T Consensus 75 ~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~ 149 (403)
T PRK08636 75 KLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAI-TNPGDVAIVPDPAYPI----HSQAFILAGGNVHKMPLE 149 (403)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHh-CCCCCEEEEcCCCCcc----hHHHHHhcCCEEEEEecc
Confidence 4555555554 6433323 4999999999999999999 8999998765544331 234566789999999885
Q ss_pred C-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCc--C--CCCCC
Q 037063 258 W-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATAL--G--SKDMD 328 (588)
Q Consensus 258 ~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~--~--~~d~~ 328 (588)
. .+..+|.+++.+.+.+. .+....+++++++++++||||..++.++ | ++|+++++++|+|.+-. . +....
T Consensus 150 ~~~~~~~d~~~l~~~l~~~-~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~ 228 (403)
T PRK08636 150 YNEDFELDEDQFFENLEKA-LRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTP 228 (403)
T ss_pred ccccCccChhhhhhHHHHH-HhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCC
Confidence 3 33578887654443310 0011257899999999999999999877 4 77899999999999822 1 11011
Q ss_pred C-CCCCCC-CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 329 T-LGLSLF-KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 329 ~-l~l~~~-~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
+ ..+... ..-+++.|+.|.||.+..++|+++.++++++.+...... . ..++..
T Consensus 229 ~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~~li~~~~~~~~~----~---------------------~~~~~~ 283 (403)
T PRK08636 229 SILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNKKLVGALKKIKSW----L---------------------DYGMFT 283 (403)
T ss_pred ChhcCCCccccEEEEEecccccCCccceeeeeeCCHHHHHHHHHHHHH----h---------------------cccCCh
Confidence 1 111111 123457899999986567799999888877665432210 0 011122
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGT 486 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~ 486 (588)
+.+. ++..+++..... ++++.+..+...+.+.+.|... ++.+..| ..|..+-+.+++.. .
T Consensus 284 ~~q~----~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~----------~~~~~~p----~~g~~~~~~l~~~~-~ 343 (403)
T PRK08636 284 PIQV----AATIALDGDQSC-VEEIRETYRKRRDVLIESFANA----------GWELQKP----RASMFVWAKIPEPA-R 343 (403)
T ss_pred HHHH----HHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHC----------CCcccCC----CcceEEEEECCCcc-C
Confidence 2221 111233211111 4555566666667777777763 2333332 12334444443210 0
Q ss_pred CcCHHHH-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 487 RIDPALV-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 487 ~i~~~~v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
.++...+ .+++++.||.+.+|.... . .+.+++||+++ .+.+++++.++.|+++
T Consensus 344 ~~~~~~l~~~ll~~~gV~v~pg~~f~----------------~--------~~~~~iRi~~~--~~~~~l~~~~~rl~~~ 397 (403)
T PRK08636 344 HLGSLEFSKQLLTEAKVAVSPGIGFG----------------E--------YGDEYVRIALI--ENENRIRQAARNIKKF 397 (403)
T ss_pred CCCHHHHHHHHHHhCCEEEecchhhC----------------c--------CCCCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 1233444 466778999999884331 0 12239999997 5789999999999988
Q ss_pred hhh
Q 037063 566 LDA 568 (588)
Q Consensus 566 l~~ 568 (588)
++.
T Consensus 398 l~~ 400 (403)
T PRK08636 398 LKE 400 (403)
T ss_pred HHh
Confidence 865
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8e-17 Score=171.26 Aligned_cols=330 Identities=12% Similarity=0.042 Sum_probs=205.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+++.+.+++++|++ .+++|+|+|+|+.+++..+.+++||+|+++ ..|++ . ...++..|++++.+++
T Consensus 30 ~~~~~~~e~~la~~~g~~----~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~-~----~~~~~~~G~~~v~~d~ 100 (375)
T PRK11706 30 GGFTRRCQQWLEQRFGSA----KVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVS-T----ANAFVLRGAKIVFVDI 100 (375)
T ss_pred CHHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHH-H----HHHHHHcCCEEEEEec
Confidence 356678889999999983 399999999999998887768999997754 44443 2 3345668999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC--CCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK--DMDTLGLS 333 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~--d~~~l~l~ 333 (588)
+..++.+|+++++++++ +++++|++.| ++|...++++| ++|+++|++||+|+++..+. +-.+++
T Consensus 101 d~~~~~~d~~~le~~i~--------~~tk~i~~~~---~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g-- 167 (375)
T PRK11706 101 RPDTMNIDETLIEAAIT--------PKTRAIVPVH---YAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALG-- 167 (375)
T ss_pred CCCcCCcCHHHHHHhcC--------CCCeEEEEeC---CCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeee--
Confidence 85556789999999998 6789888764 59999999999 99999999999999987762 112222
Q ss_pred CCCCcEEEeccC--ccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 334 LFKPDFLICSFY--KIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 334 ~~~~D~vv~S~~--K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
. -.|+-++||| |.++. +.| |+++++ +++.++++..... |......... . .... .+...|+.....-
T Consensus 168 ~-~~~~~~~Sf~~~K~l~~-g~g-G~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~----~-~~~~-~~~~~g~~~~~~~ 236 (375)
T PRK11706 168 T-IGHIGCFSFHETKNYTA-GEG-GALLINDPALIERAEIIREK--GTNRSQFFRG----Q-VDKY-TWVDIGSSYLPSE 236 (375)
T ss_pred c-CcCEEEEeCCCCccccc-cCC-eEEEECCHHHHHHHHHHHHc--CCCcchhhcc----C-CCcc-eeeecccccCcCH
Confidence 1 1488999999 98873 233 555554 4555555443322 1100000000 0 0000 0102344333221
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeC-CCCCCCcccEEEEEeecCCCCCcC
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYG-PKVMFDRGPSLAFNVFDWNGTRID 489 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~-p~~~~~rg~iv~f~~~~~~g~~i~ 489 (588)
.....++..++. ++.+.++.+++.+++.+.|.++.. ...+++.. +........++.+.+.+ + .+
T Consensus 237 ---~~aa~~~~ql~~--l~~~~~~R~~~~~~~~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~ 301 (375)
T PRK11706 237 ---LQAAYLWAQLEA--ADRINQRRLALWQRYYDALAPLAE------AGRIELPSIPDDCKHNAHMFYIKLRD--L--ED 301 (375)
T ss_pred ---HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCc------CCeeecCCCCCCCceeeEEEEEEECC--c--CC
Confidence 122244555555 578888888999999999987521 01233221 11101112233344432 1 35
Q ss_pred HHHHHHHHHhCCcEeccccccC---cccccc----hHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHH
Q 037063 490 PALVQKLADRHNISLSCGFLQN---IFFSGE----YEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 490 ~~~v~~~l~~~gI~v~~G~~c~---~~~~~~----~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l 562 (588)
.+.+.+.|.++||.++.+.... +.+... ..-.....+.. ..|.+.++..-+.+|++++++.|
T Consensus 302 r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~-----------~~l~lP~~~~l~~~~~~~i~~~i 370 (375)
T PRK11706 302 RSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESE-----------RLLRLPLFYNLTDVEQRTVIDTI 370 (375)
T ss_pred HHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHh-----------CcEeccCCCCCCHHHHHHHHHHH
Confidence 7888999999999987543111 100000 00000111111 27888889888999999999999
Q ss_pred HHhh
Q 037063 563 SRFL 566 (588)
Q Consensus 563 ~~~l 566 (588)
++++
T Consensus 371 ~~~~ 374 (375)
T PRK11706 371 LEFF 374 (375)
T ss_pred HHHh
Confidence 9875
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-17 Score=174.69 Aligned_cols=283 Identities=13% Similarity=0.114 Sum_probs=182.8
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCC-C
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWP-N 260 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~-~ 260 (588)
.++|+.|++++++++++ |++|+|+++++.+++.++ +++||+|++....+. .+ ...++..|++++.++++.. +
T Consensus 68 ~~lr~~ia~~~~~~~~~--I~it~G~~~al~~~~~~~-~~~gd~V~v~~P~y~-~~---~~~~~~~g~~~~~~~l~~~~~ 140 (357)
T PRK14809 68 ADLTAALADRWDVSPEQ--VWLANGGDGALDYLARAM-LDPGDTVLVPDPGFA-YY---GMSARYHHGEVREYPVSKADD 140 (357)
T ss_pred HHHHHHHHHHhCCCcce--EEECCCHHHHHHHHHHHh-cCCCCEEEEeCCChH-HH---HHHHHHcCCeEEEEecccCcC
Confidence 48999999999998765 999999999999999999 899999776554432 12 2244567999999988632 3
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHc--CcEEEEeCCCcC-CCCCCCCC-CCCC
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEK--GWHVLLDATALG-SKDMDTLG-LSLF 335 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~--g~~vvvDaa~~~-~~d~~~l~-l~~~ 335 (588)
..++.+++++.+. +++++++++++||||..+|.+++ ++++.. ++++|+|.+..- ..+...+. +...
T Consensus 141 ~~~~~~~~~~~~~---------~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~ 211 (357)
T PRK14809 141 FEQTADTVLDAYD---------GERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEER 211 (357)
T ss_pred CCcCHHHHHHhhc---------CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhC
Confidence 4456666655432 57899999999999999999998 766643 789999998321 10011111 1111
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHH
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLV 415 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~a 415 (588)
.--+++.||.|.||.+..++|+++.++++++.+...... . +...+.. .+
T Consensus 212 ~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~--~-------------------------~~~~~~~----~~ 260 (357)
T PRK14809 212 DDVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARVNTP--F-------------------------AASELAC----RA 260 (357)
T ss_pred CCEEEEecchhHhcCcchhheeeecCHHHHHHHHHhCCC--C-------------------------CCCHHHH----HH
Confidence 123678899999985445699999998887766533211 0 0001111 11
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHH
Q 037063 416 ECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQK 495 (588)
Q Consensus 416 l~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~ 495 (588)
...+|+. ... +++..+..+...+++.+.|... .+ | ..|..+.+.+. +...+.+
T Consensus 261 a~~~l~~-~~~-~~~~~~~~~~~r~~l~~~L~~~-------------~~-~----~~g~f~~~~~~-------~~~~~~~ 313 (357)
T PRK14809 261 GLAALDD-DEH-VERTVETARWAREYIREELDAP-------------TW-E----SAGNFVLAEVG-------DASAVAE 313 (357)
T ss_pred HHHHhCC-HHH-HHHHHHHHHHHHHHHHHHhcCc-------------cC-C----CCCCEEEEECC-------CHHHHHH
Confidence 2233321 111 3344444455555565555431 11 1 23445544442 2456777
Q ss_pred HHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 496 LADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 496 ~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
.|.++||.++.|..+. .. ++||+|++ +.++++++++.|+++++
T Consensus 314 ~l~~~gv~v~~g~~f~------------------------~~--~~iRls~~---~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 314 AAQERGVIVRDCTSFG------------------------LP--ECIRITCG---TREETERAVEVLNEVLA 356 (357)
T ss_pred HHHHCCEEEEECccCC------------------------CC--CeEEEecC---CHHHHHHHHHHHHHHhc
Confidence 7888999999884321 01 28999976 57999999999998875
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-17 Score=172.64 Aligned_cols=206 Identities=14% Similarity=0.152 Sum_probs=146.5
Q ss_pred CeeeecCCCCC-CCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 111 NYVCFDYIGHG-LFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 111 ~~vyLD~a~~g-l~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
+.++||++... ..|..+++++.+.+...... .|.. .-..++|+.|+
T Consensus 19 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~Y~~---~g~~~lr~~ia 65 (337)
T PRK03967 19 YRIWLDKNENPFDLPEELKEEIFEELKRVPFN------------------------------RYPH---ITSDPLREAIA 65 (337)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHhhcCccc------------------------------cCCC---CCHHHHHHHHH
Confidence 56899988877 45677777765544210000 0110 01358999999
Q ss_pred HHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHH
Q 037063 190 DFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLM 269 (588)
Q Consensus 190 ~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~ 269 (588)
+++|+++++ |++|+|+++++.+++..+ +||+|++....+. .+ ...++..|++++.++.+ .++.++.++++
T Consensus 66 ~~~~~~~~~--I~~t~G~~~~l~~~~~~~---~gd~V~v~~P~y~-~~---~~~~~~~g~~~~~v~~~-~~~~~d~~~l~ 135 (337)
T PRK03967 66 EFYGLDAEN--IAVGNGSDELISYLVKLF---EGKHIVITPPTFG-MY---SFYAKLNGIPVIDVPLK-EDFTIDGERIA 135 (337)
T ss_pred HHhCcCcce--EEEcCCHHHHHHHHHHHh---CCCeEEEeCCChH-HH---HHHHHHcCCeEEEeecC-CCCCcCHHHHH
Confidence 999998765 999999999999998876 5899776554433 12 34557789999999987 55678998888
Q ss_pred HHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCc--CCCCCCCCCCCCCCCcEEEeccCc
Q 037063 270 KKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATAL--GSKDMDTLGLSLFKPDFLICSFYK 346 (588)
Q Consensus 270 ~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~--~~~d~~~l~l~~~~~D~vv~S~~K 346 (588)
+.+ ++++++++++++||||..+|.++| ++++ +|+++|+|.+.. .+.....+ ++...--+++.|+.|
T Consensus 136 ~~~---------~~~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~-~~~~~~vi~l~S~SK 204 (337)
T PRK03967 136 EKA---------KNASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFSGKSLIGL-IDEYPNLILLRTFSK 204 (337)
T ss_pred Hhc---------cCCCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhcccchHHH-HhhCCCEEEEecchH
Confidence 754 367889999999999999999999 7774 799999999843 22111111 111112367789999
Q ss_pred cCCCCCCceEEEEEeCcchhcccC
Q 037063 347 IFGENPSGFGCLFVKKSSASVLSG 370 (588)
Q Consensus 347 ~~G~~P~G~G~L~v~~~~~~~l~~ 370 (588)
.||.+..++|++++++++++.+..
T Consensus 205 ~~~l~GlRiG~iv~~~~~i~~~~~ 228 (337)
T PRK03967 205 AFGLAGIRAGYAIANEEIIDALYR 228 (337)
T ss_pred hhcchhhhheeeecCHHHHHHHHh
Confidence 998545679999998887776653
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-16 Score=172.79 Aligned_cols=214 Identities=17% Similarity=0.205 Sum_probs=153.9
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
.+.+|+++.|.+++|+.+++++.+.+.. +.|.+ | ++. .| +..+.++.+++.++
T Consensus 85 tg~v~~tNlg~s~l~~~v~eav~~~~~~--~~~le-------------~-------~l~----~g-~~g~r~~~~e~~lA 137 (464)
T PRK04311 85 TGVVLHTNLGRALLSEAAIEAVTEAARG--YSNLE-------------Y-------DLA----TG-KRGSRDRALAALLC 137 (464)
T ss_pred CccEEeccCCCCCCCHHHHHHHHHHHhc--ccccc-------------c-------chh----hc-ccchHHHHHHHHHH
Confidence 4778999999999999999998655421 21210 0 010 01 12456789999999
Q ss_pred HHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCch--hHHHHHHHHHHhcCCEEEEEeccCCCCccCHH
Q 037063 190 DFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHEN--EAAALMIESSKKRGARVSSAEFAWPNLRIHSG 266 (588)
Q Consensus 190 ~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s--~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e 266 (588)
+++|++ + .++++|++.|+.+++.+ +.+||+|++. .++.. .+.. +...++..|+++++++.+ ...+++
T Consensus 138 ~l~Gae--~--a~vv~sgtaAl~l~l~~--l~~GdeVIvs~~e~~~~ggs~~-i~~~~~~~G~~l~~v~~~---~~t~~~ 207 (464)
T PRK04311 138 ALTGAE--D--ALVVNNNAAAVLLALNA--LAAGKEVIVSRGELVEIGGAFR-IPDVMRQAGARLVEVGTT---NRTHLR 207 (464)
T ss_pred HHhCCC--e--EEEECCHHHHHHHHHHH--hCCCCEEEEcchhhhhcCcchh-hHHHHHHCCcEEEEECCC---CCCCHH
Confidence 999984 2 67788888999998866 5789996654 44542 1222 234557789999998764 346789
Q ss_pred HHHHHHhhhccccCCCcceEEEEeCCCCC--CC--ccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCC------CCCC---
Q 037063 267 KLMKKIVGKRKKKKKKKRGLFVFPLQSKV--TG--ARYSYMWM-SVAAEKGWHVLLDATALGSKDMD------TLGL--- 332 (588)
Q Consensus 267 ~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~--tG--~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~------~l~l--- 332 (588)
+++++|+ ++|++|.+.|.+|+ +| ...|+++| ++||++|+++++|+++..-.+.. ...+
T Consensus 208 dle~aI~--------~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~ 279 (464)
T PRK04311 208 DYEQAIN--------ENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQEL 279 (464)
T ss_pred HHHHhcC--------ccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhH
Confidence 9999998 78999999999997 45 57899999 99999999999999531100010 1111
Q ss_pred CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccC
Q 037063 333 SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSG 370 (588)
Q Consensus 333 ~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~ 370 (588)
-..++|++++|+||++|. | ..|+++++++++++++.
T Consensus 280 l~~GaDiv~fSg~K~LgG-p-~~G~i~g~~~li~~l~~ 315 (464)
T PRK04311 280 LAAGVDLVTFSGDKLLGG-P-QAGIIVGKKELIARLKK 315 (464)
T ss_pred HhcCCcEEEecCcccccC-C-ceEEEEEcHHHHHHHhh
Confidence 124599999999998873 6 58999999998887763
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-16 Score=172.45 Aligned_cols=214 Identities=15% Similarity=0.185 Sum_probs=152.6
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
.+.+|+++.|.+++|+.+++++.+.+.. ++|.+ | ++.. | .....++.+++.++
T Consensus 80 tg~v~~tNlg~s~l~~~vieAv~~~~~~--y~~l~-------------~-------~l~~----g-~~g~r~~~le~~lA 132 (454)
T TIGR00474 80 TGVVLHTNLGRAPLAEEAIEAVTDAARG--YSNLE-------------Y-------DLET----G-KRGSRYSHVEGLLC 132 (454)
T ss_pred CCcEEeccCCCCCCCHHHHHHHHHHHhc--ccchh-------------c-------cccc----c-ccchHHHHHHHHHH
Confidence 4679999999999999999998766532 22220 0 0100 1 11455789999999
Q ss_pred HHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCch--hHHHHHHHHHHhcCCEEEEEeccCCCCccCHH
Q 037063 190 DFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHEN--EAAALMIESSKKRGARVSSAEFAWPNLRIHSG 266 (588)
Q Consensus 190 ~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s--~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e 266 (588)
+++|++. .++++|++.|+.+++.+ +.+||+|++. .+|.. .+.. +...++..|+++++++.+ ...+.+
T Consensus 133 ~l~gae~----alvv~sg~aAi~l~l~~--l~~GdeVIvs~~e~v~~ggs~~-i~~~~~~~G~~~~~v~~~---~~~~l~ 202 (454)
T TIGR00474 133 ELTGAED----ALVVNNNAAAVLLALNT--LAKGKEVIVSRGELVEIGGSFR-IPDVMEQSGAKLVEVGTT---NRTHLK 202 (454)
T ss_pred HHhCCCc----EEEECCHHHHHHHHHHH--hCCcCEEEECCChhhhhcchhh-HHHHHHHcCCEEEEeCCC---CCCCHH
Confidence 9999952 44567788899988865 6899997654 44421 1111 124456789999998764 245789
Q ss_pred HHHHHHhhhccccCCCcceEEEEeCCCCCC--C--ccCCHHHH-HHHHHcCcEEEEeCCCcCCCC-------CCCC--CC
Q 037063 267 KLMKKIVGKRKKKKKKKRGLFVFPLQSKVT--G--ARYSYMWM-SVAAEKGWHVLLDATALGSKD-------MDTL--GL 332 (588)
Q Consensus 267 ~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~t--G--~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d-------~~~l--~l 332 (588)
+++++|+ ++|++|++.|.+|++ | ...|+++| ++||++|+++++|++...-.+ ..+. +.
T Consensus 203 dle~aI~--------~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~ 274 (454)
T TIGR00474 203 DYEDAIT--------ENTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEV 274 (454)
T ss_pred HHHHhcC--------cCCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccH
Confidence 9999998 789999999999984 6 58899999 999999999999986211000 1111 22
Q ss_pred CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccC
Q 037063 333 SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSG 370 (588)
Q Consensus 333 ~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~ 370 (588)
...++|++++|+||++|. | ..|+++++++.++.++.
T Consensus 275 ~~~GaDiv~fSg~K~LgG-p-~~G~i~g~~~~i~~l~~ 310 (454)
T TIGR00474 275 IAAGVDLVTFSGDKLLGG-P-QAGIIVGKKELIERLKK 310 (454)
T ss_pred hHcCCCEEEecCccccCC-C-eEEEEEECHHHHHhhhh
Confidence 234599999999998873 6 47999999988876654
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-17 Score=176.68 Aligned_cols=278 Identities=16% Similarity=0.122 Sum_probs=196.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--CC---------CCC--eEEEcCCCchhHHHHHHHHH
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--FY---------SNP--RLLTVYDHENEAAALMIESS 244 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--~~---------~gd--~ll~~~e~~s~~~~~~~~~a 244 (588)
..+++++-..+++++|.+ ++..-.||+|+|+|+-+.+.+.. +. +++ +|+++...|. + + .+.+
T Consensus 100 ~~~E~~~v~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~-s--~-~Kaa 174 (460)
T COG0076 100 AELEERVVNMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHF-S--F-EKAA 174 (460)
T ss_pred HHHHHHHHHHHHHHhCCC-CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchh-H--H-HHHH
Confidence 788999999999999997 55679999999999876555432 10 111 4776665553 1 2 6778
Q ss_pred HhcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceE--EEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCC
Q 037063 245 KKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGL--FVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATA 321 (588)
Q Consensus 245 ~~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~L--v~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~ 321 (588)
+..|.+++.++.+..+.++|+++|+++|+ +.+.. |+.+..++.+|.+-|+++| ++|+++++++|||||-
T Consensus 175 ~~lG~~~~~v~~~~~~~~id~~~l~~~i~--------~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~ 246 (460)
T COG0076 175 RYLGLGLRRVPTVPTDYRIDVDALEEAID--------ENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAF 246 (460)
T ss_pred HHhCCCceeEEeccCccccCHHHHHHHHH--------hhccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccc
Confidence 88999999999984479999999999999 44544 8889999999999999999 9999999999999993
Q ss_pred cC---CC-CC-CCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCc-chhcc---cCCCCCCCceEeeecCCCcccccc
Q 037063 322 LG---SK-DM-DTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKS-SASVL---SGSTSSVSTIMGIEPSFSEIIELE 392 (588)
Q Consensus 322 ~~---~~-d~-~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~-~~~~l---~~~~~g~~g~v~~~~~~~~~~~~~ 392 (588)
.+ |. +. ..++....++|.+++++||++.. |.|+|++++|++ ...+. ..++.++ +.. +
T Consensus 247 GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~a-P~~~G~il~rd~e~l~~~~~~~~~yl~~-~~~---~--------- 312 (460)
T COG0076 247 GGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLA-PIGCGVVLFRDEEALRRILIFADYYLPG-GGI---P--------- 312 (460)
T ss_pred cceeecccCccchhhcCCCCceEEEECcccccCC-CCCceEEEEECHHHhhhhhhcccccCCC-CCc---C---------
Confidence 33 31 11 22244455699999999997775 999999999997 33322 1222221 110 0
Q ss_pred cccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc
Q 037063 393 TLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR 472 (588)
Q Consensus 393 ~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r 472 (588)
-+...||.+-.. .++....+..+-.-|+.++.++..++++++.++|.++ +.+++..+ ..
T Consensus 313 -----~~ti~~sr~~~~---~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~---------~~~e~~~~----p~ 371 (460)
T COG0076 313 -----NFTILGSRPGRQ---ALALYANLRRLGREGYRKLLDRTLELARYLAEELEKL---------GDFELVNE----PE 371 (460)
T ss_pred -----ceeEeeccchHH---HHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhC---------CCcEeecC----Cc
Confidence 010122222222 2455566777655578999999999999999999995 55788775 35
Q ss_pred ccEEEEEeecCCCCCcCHHHHHHHHHhCCcEecc
Q 037063 473 GPSLAFNVFDWNGTRIDPALVQKLADRHNISLSC 506 (588)
Q Consensus 473 g~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~ 506 (588)
.++|+|..++... ........+++.|..+..
T Consensus 372 l~~V~fr~~~~~~---~~~~~~~~~~~~gw~v~~ 402 (460)
T COG0076 372 LPIVAFRLKDDED---TLADLSERLDRRGWQVPA 402 (460)
T ss_pred cceEEEEcCCccc---chhchHHHHHhcCceeec
Confidence 7999999965321 123344556667777653
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.1e-17 Score=173.47 Aligned_cols=337 Identities=13% Similarity=0.123 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhC--------CCCCCCeEEE-cCCCchhHHHHHHHHHHhcCC
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY--------PFYSNPRLLT-VYDHENEAAALMIESSKKRGA 249 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~--------~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~ 249 (588)
....+.++.+++++|++ .+++++|+|+|+.+++.++ .+++||+|++ ...|.+ .. ..+...|+
T Consensus 63 ~~~~~fe~~lA~~~g~~----~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a-~~----~~v~~~G~ 133 (438)
T PRK15407 63 RFNDAFEKKLAEFLGVR----YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPT-TV----NPIIQNGL 133 (438)
T ss_pred hhHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHH-HH----HHHHHcCC
Confidence 34678999999999984 2899999999999988876 5789999664 555654 22 23345799
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCC
Q 037063 250 RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMD 328 (588)
Q Consensus 250 ~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~ 328 (588)
+++.++++..++.+|+++++++++ ++|++|++++. .|...++++| ++|+++|++||+|++|+.+....
T Consensus 134 ~pv~vdvd~~~~~id~~~le~~i~--------~~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~ 202 (438)
T PRK15407 134 VPVFVDVELPTYNIDASLLEAAVS--------PKTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYD 202 (438)
T ss_pred EEEEEecCCCcCCcCHHHHHHHcC--------cCCeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhcC
Confidence 999999975677899999999998 78999999885 7899999999 99999999999999998872112
Q ss_pred CCCCCCCCCcEEEeccC--ccCCCCCCceEEEEEeCcchh-cccCCCCCCCceEee-ecCCC-----ccc----cccccc
Q 037063 329 TLGLSLFKPDFLICSFY--KIFGENPSGFGCLFVKKSSAS-VLSGSTSSVSTIMGI-EPSFS-----EII----ELETLD 395 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~--K~~G~~P~G~G~L~v~~~~~~-~l~~~~~g~~g~v~~-~~~~~-----~~~----~~~~~~ 395 (588)
.-.+..+ -|+.++||| |.+.. ..| |+++++++.+. +++..... |.... .+... ... .+....
T Consensus 203 g~~~G~~-gd~~~fSf~~~k~~~~-geG-G~l~t~d~~l~~~~~~~~~~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (438)
T PRK15407 203 GRMTGTF-GDIATLSFYPAHHITM-GEG-GAVFTNDPLLKKIIESFRDW--GRDCWCAPGCDNTCGKRFGWQLGELPFGY 277 (438)
T ss_pred Ceeeecc-CceEEEeCCCCCCccc-cCc-eEEEECCHHHHHHHHHHHHh--Ccccccccccccccccccccccccccccc
Confidence 1111122 399999998 43432 234 89999886553 33222111 11000 00000 000 000000
Q ss_pred cccc--ccCCC-CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe-EEEeCCCCCCC
Q 037063 396 ESSQ--SKFPE-SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPL-VRIYGPKVMFD 471 (588)
Q Consensus 396 ~~~f--~e~GT-~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~-v~i~~p~~~~~ 471 (588)
...+ .+.|. ..+..+ ....++..++. ++.+.++.+++++++.+.|..+ ++ +.+..+.. ..
T Consensus 278 ~~~~~~~~~G~n~rmsel----~AAig~~qL~~--l~~~~~~R~~~a~~y~~~L~~~---------~~~~~~~~~~~-~~ 341 (438)
T PRK15407 278 DHKYTYSHLGYNLKITDM----QAAIGLAQLEK--LPGFIEARKANFAYLKEGLASL---------EDFLILPEATP-NS 341 (438)
T ss_pred cccccccccccccCccHH----HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccC---------CCccccCcCCC-CC
Confidence 0001 12332 222222 22356677777 4888888899999999999874 32 22211111 11
Q ss_pred cccEEEEEeecCCCCCcCHHHHHHHHHhCCcEecccc--ccC--cccccc-h----HHHHHHHHhhhcCCCCCcCCccEE
Q 037063 472 RGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGF--LQN--IFFSGE-Y----EQERVRVLETRSGTNETRSGVSVV 542 (588)
Q Consensus 472 rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~--~c~--~~~~~~-~----~~~~~~~l~~~~~~~~~~~g~~~v 542 (588)
......|.+.-.++..++.+.+.+.|.++||..+... .|+ +.+... + .-.....+. ...|
T Consensus 342 ~~~~~~~~i~~~~~~~~~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~-----------~~~l 410 (438)
T PRK15407 342 DPSWFGFPITVKEDAGFTRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIM-----------NDTF 410 (438)
T ss_pred eeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHH-----------hCeE
Confidence 2222233332111122567889999999999876532 111 111000 0 000011111 1268
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 543 TAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 543 RvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
-+-++..-|.+||+++++.|++++.
T Consensus 411 ~LP~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 411 WIGVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHh
Confidence 8888888899999999999999875
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-17 Score=174.45 Aligned_cols=293 Identities=11% Similarity=0.037 Sum_probs=184.6
Q ss_pred HHHHHHHHHHh----C--CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 182 SKIRKRIMDFM----N--ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 182 ~~~r~~ia~~l----g--a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.++|+.|++++ | ++++ .+|++|+|+++++.+++..+ +++||+|++....+... ...++..|++++.++
T Consensus 73 ~~lr~aia~~~~~~~g~~~~~~-~~i~it~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~~----~~~~~~~g~~~~~i~ 146 (389)
T PRK08068 73 PFLKEAAADFYKREYGVTLDPE-TEVAILFGGKAGLVELPQCL-MNPGDTILVPDPGYPDY----LSGVALARAQFETMP 146 (389)
T ss_pred HHHHHHHHHHHHHHhCCCCCCC-ccEEEcCCcHHHHHHHHHHh-CCCCCEEEEcCCCCcch----HHHHHhcCCEEEEee
Confidence 36677777765 5 4444 14999999999999999998 79999977654443322 334567899999999
Q ss_pred ccCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcC-CCC---
Q 037063 256 FAWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALG-SKD--- 326 (588)
Q Consensus 256 ~~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~-~~d--- 326 (588)
.+.+ +..+|.+++++.+. +++++|+++.++||||..+|.+++ ++|++++++||+|.+..- ..+
T Consensus 147 ~~~~~~~~~d~~~l~~~~~--------~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~ 218 (389)
T PRK08068 147 LIAENNFLPDYTKIPEEVA--------EKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQK 218 (389)
T ss_pred cccccCCCCCHHHHHHhcc--------ccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCC
Confidence 8733 34578899998886 578999999999999999998764 678999999999998421 111
Q ss_pred CCC-CCCC-CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 327 MDT-LGLS-LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 327 ~~~-l~l~-~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
..+ +.+. .....+++.|+.|.||.+..++|+++.++++++.+...... + ..++
T Consensus 219 ~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~l~~~~~~------------------------~-~~~~ 273 (389)
T PRK08068 219 PVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNESVIEAINLLQDH------------------------L-FVSL 273 (389)
T ss_pred CcChhhCCCccCCEEEEecchhccCCccceeEeEecCHHHHHHHHHHHhh------------------------c-cCCC
Confidence 101 1111 12245788999999985455699999988887766432211 0 0111
Q ss_pred CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE-EEEEeecC
Q 037063 405 SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS-LAFNVFDW 483 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i-v~f~~~~~ 483 (588)
++..+ .++..++..-.+. ++...++.+..++++.+.|.++ ++.++.| .++. +-+.+.+.
T Consensus 274 ~~~~q----~~~~~~l~~~~~~-~~~~~~~~~~~r~~~~~~L~~~----------g~~~~~~-----~g~~~~~v~~~~~ 333 (389)
T PRK08068 274 FGAIQ----DAAIEALLSDQSC-VAELVARYESRRNAFISACREI----------GWEVDAP-----KGSFFAWMPVPKG 333 (389)
T ss_pred ChHHH----HHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHC----------CCcccCC-----CeeEEEEEECCCC
Confidence 11111 1112222110111 4556666777777888888764 2333322 3444 33444431
Q ss_pred CCCCcCHHHHHHHHH-hCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHH
Q 037063 484 NGTRIDPALVQKLAD-RHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 484 ~g~~i~~~~v~~~l~-~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l 562 (588)
++...+.+.+. ++||.++.|.... . .+.++||++++. ..+.+...++.|
T Consensus 334 ----~~~~~~~~~l~~~~gi~v~pg~~f~----------------~--------~~~~~iRi~~~~--~~~~l~~al~~l 383 (389)
T PRK08068 334 ----YTSEQFADLLLEKAHVAVAPGNGFG----------------E--------HGEGYVRVGLLT--DEERLREAVERI 383 (389)
T ss_pred ----CCHHHHHHHHHHhCCEEEecchHhC----------------c--------cCCCeEEEEEcC--CHHHHHHHHHHH
Confidence 35666666554 5799999874321 0 122389999973 445555555444
Q ss_pred H
Q 037063 563 S 563 (588)
Q Consensus 563 ~ 563 (588)
+
T Consensus 384 ~ 384 (389)
T PRK08068 384 G 384 (389)
T ss_pred H
Confidence 4
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-17 Score=175.24 Aligned_cols=302 Identities=13% Similarity=0.083 Sum_probs=186.0
Q ss_pred HHHHHHHHHh------CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 183 KIRKRIMDFM------NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 183 ~~r~~ia~~l------ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++|+.|++++ +++++ .|++|+|+++|+.+++.++ .++||+|++....+... ...++..|++++.++.
T Consensus 78 ~lr~aia~~~~~~~g~~~~~~--~I~it~G~~~al~~~~~~l-~~~gd~v~v~~P~y~~~----~~~~~~~g~~~~~~~~ 150 (409)
T PLN00143 78 PARRAIADYLSNDLPYQLSPD--DVYLTLGCKHAAEIIIKVL-ARPEANILLPRPGFPDV----ETYAIFHHLEIRHFDL 150 (409)
T ss_pred HHHHHHHHHHHhhcCCCCCHh--hEEEecChHHHHHHHHHHH-cCCCCEEEEcCCCCcCH----HHHHHHcCCEEEEEec
Confidence 5777777776 34554 4999999999999999999 89999977655443312 3455678999999987
Q ss_pred cC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC----CCCC
Q 037063 257 AW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG----SKDM 327 (588)
Q Consensus 257 ~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~----~~d~ 327 (588)
+. .+..+|.++|++++. ++++++++++++||||..++.++ | ++|+++++++|+|.+..- +...
T Consensus 151 ~~~~~~~~d~~~l~~~~~--------~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~ 222 (409)
T PLN00143 151 LPEKGWEVDLDAVEAIAD--------ENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPF 222 (409)
T ss_pred cCCCCCcCCHHHHHHhcc--------cCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCC
Confidence 42 345689999998887 67899999999999999999665 4 778999999999998321 1101
Q ss_pred CCCC-CCCCCCcEEEeccCccCCCCCCceEEEEEe-C-cchhcc---cCCCCCCCceEeeecCCCccccccccccccccc
Q 037063 328 DTLG-LSLFKPDFLICSFYKIFGENPSGFGCLFVK-K-SSASVL---SGSTSSVSTIMGIEPSFSEIIELETLDESSQSK 401 (588)
Q Consensus 328 ~~l~-l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~-~-~~~~~l---~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e 401 (588)
.++. +.....-+++.|+.|.|+.+..++|++++. + .+++.+ ....... .. .
T Consensus 223 ~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~-~~----------------------~ 279 (409)
T PLN00143 223 VPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKAL-NP----------------------A 279 (409)
T ss_pred cchhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHH-hc----------------------c
Confidence 1111 111112378889999988656779999984 3 232211 0000000 00 0
Q ss_pred CCCCCccchhhHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE-EEEE
Q 037063 402 FPESSISGVSSKLVECKGLDH-ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS-LAFN 479 (588)
Q Consensus 402 ~GT~~~~~~~~~~al~~aL~~-l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i-v~f~ 479 (588)
.....+.+ .++..+|+. .... +++..++++...+++.+.|.++ +...+.. ...|+. +-+.
T Consensus 280 ~~~~~~~q----~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~---------~~~~~~~----~p~gg~f~w~~ 341 (409)
T PLN00143 280 PFPPTFIQ----AAIPEILEKTTEDF-FSKTINILRAALAFCYDKLKEI---------PCIMCPQ----KAEGAFFALVK 341 (409)
T ss_pred CCCCchHH----HHHHHHHhcChHHH-HHHHHHHHHHHHHHHHHHHhcC---------CCCCCCC----CCCeeEEEEEe
Confidence 00111111 223333321 0111 3555566666667777777664 2221111 123443 3334
Q ss_pred eecC--CCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHH
Q 037063 480 VFDW--NGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYR 557 (588)
Q Consensus 480 ~~~~--~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~ 557 (588)
+... .+..-+.+.+.+++.+.||.+.+|..+. .. +++|++++ .+.++++.
T Consensus 342 l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~------------------------~~--~~iRi~~~--~~~~~l~~ 393 (409)
T PLN00143 342 LNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVG------------------------LK--NWLRITFA--VEQSSLED 393 (409)
T ss_pred cchhhcCCCCCHHHHHHHHHHhCCEEEeCccccC------------------------CC--CeEEEEEc--CCHHHHHH
Confidence 4321 0100123445678889999999884320 02 28999998 36899999
Q ss_pred HHHHHHHhhhh
Q 037063 558 LWAFVSRFLDA 568 (588)
Q Consensus 558 li~~l~~~l~~ 568 (588)
.++.|+++++.
T Consensus 394 al~rl~~~l~~ 404 (409)
T PLN00143 394 GLGRLKSFCGR 404 (409)
T ss_pred HHHHHHHHHHH
Confidence 99999888764
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-17 Score=173.10 Aligned_cols=306 Identities=17% Similarity=0.137 Sum_probs=192.3
Q ss_pred cCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEE
Q 037063 173 YGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 173 ~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
|++......+.++++|+++-|+. .++.++++..|+..++.++ +++||+|+.....+......+.....+.|+++.
T Consensus 49 Y~R~gnPt~~~le~~la~Le~g~----~a~~~~SGmaAi~~~l~~l-l~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~ 123 (386)
T PF01053_consen 49 YSRYGNPTVRALEQRLAALEGGE----DALLFSSGMAAISAALLAL-LKPGDHIVASDDLYGGTYRLLEELLPRFGVEVT 123 (386)
T ss_dssp BTTTC-HHHHHHHHHHHHHHT-S----EEEEESSHHHHHHHHHHHH-S-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEE
T ss_pred eeccccccHHHHHHHHHHhhccc----ceeeccchHHHHHHHHHhh-cccCCceEecCCccCcchhhhhhhhcccCcEEE
Confidence 45555677789999999999983 3777899999999999999 899999765444333366666777788999999
Q ss_pred EEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcC-cEEEEeCCCcCCCCCCCC
Q 037063 253 SAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKG-WHVLLDATALGSKDMDTL 330 (588)
Q Consensus 253 ~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g-~~vvvDaa~~~~~d~~~l 330 (588)
+++.. +.++|+++++ ++|++|.+..++||+..+.|++.| ++||++| ++++||.+-..|....++
T Consensus 124 ~~d~~------d~~~l~~~l~--------~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~pL 189 (386)
T PF01053_consen 124 FVDPT------DLEALEAALR--------PNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQNPL 189 (386)
T ss_dssp EESTT------SHHHHHHHHC--------TTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC-GG
T ss_pred EeCch------hHHHHHhhcc--------ccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceeeeccC
Confidence 98763 7899999998 799999999999999999999999 9999999 999999997777555555
Q ss_pred CCCCCCCcEEEeccCccCCCCCCc---eEEEEEeC--cchhcccCCC--CCCCceEeeecCCCcccccccccccccccCC
Q 037063 331 GLSLFKPDFLICSFYKIFGENPSG---FGCLFVKK--SSASVLSGST--SSVSTIMGIEPSFSEIIELETLDESSQSKFP 403 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~~G~~P~G---~G~L~v~~--~~~~~l~~~~--~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G 403 (588)
.+ ++|+++.|..|+++ +.| .|+++++. +..++++... .| ..
T Consensus 190 ~~---GaDivv~S~TKyl~--Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G--~~------------------------- 237 (386)
T PF01053_consen 190 EL---GADIVVHSATKYLS--GHSDVMGGAVVVNGSSELYDRLREFRRLLG--AT------------------------- 237 (386)
T ss_dssp GG---T-SEEEEETTTTTT--TSSSE-EEEEEESSHHHHHHHHHHHHHHHT---B-------------------------
T ss_pred cC---CceEEEeecccccc--CCcceeeEEEEECchhhhhhhhcchhhhcC--cc-------------------------
Confidence 53 39999999999887 345 67777766 4444443211 11 11
Q ss_pred CCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCC------------CC
Q 037063 404 ESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKV------------MF 470 (588)
Q Consensus 404 T~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~------------~~ 470 (588)
.+.... ..+..+|+.+ ....++..+.+..+.+.|.+ .|.| +|+-|.- ..
T Consensus 238 -~~p~da---~ll~rgl~Tl-----~~R~~~~~~nA~~lA~~L~~---------hp~V~~V~yPgl~s~p~~~~~~~~~~ 299 (386)
T PF01053_consen 238 -LSPFDA---WLLLRGLRTL-----PLRMERQNENAEALAEFLEE---------HPKVKRVYYPGLPSHPQHELAKRQMS 299 (386)
T ss_dssp ---HHHH---HHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHT---------STTEEEEEETTSTTSTTHHHHHHHCS
T ss_pred -chHHHH---HHHhcCCCcH-----HHHHHHHHHHHHHHHHHHHh---------CCCCCeEEEcccccccceeeeeeccc
Confidence 111000 1223444433 33344444555556666665 2445 4665521 11
Q ss_pred CcccEEEEEeecCCCCCcCHHHHHHHHHhCCcE---eccccc----cCccccc-chHHHHHHHHhhhcCCCCCcCCc--c
Q 037063 471 DRGPSLAFNVFDWNGTRIDPALVQKLADRHNIS---LSCGFL----QNIFFSG-EYEQERVRVLETRSGTNETRSGV--S 540 (588)
Q Consensus 471 ~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~---v~~G~~----c~~~~~~-~~~~~~~~~l~~~~~~~~~~~g~--~ 540 (588)
..|++++|.+.+. .+.+.+++++..+. .+-|.. |.+.... .... ..... ..|+ +
T Consensus 300 g~ggl~sf~l~~~------~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~--~e~~~--------~~Gi~~~ 363 (386)
T PF01053_consen 300 GGGGLLSFELKGG------EEAARRFLDALKLFSIAPSLGGVESLISHPASTSHRSLS--PEERA--------EAGISDG 363 (386)
T ss_dssp SCTSEEEEEESSH------HHHHHHHHHH-SSSEESSS-SSSS-EEEETTCTTTTTSC--HHHHH--------HTTS-TT
T ss_pred ccCceeEEEeccc------hhhhHhHHhhhhhHhhhhhcCCcccccccccchhhccCC--hhhhh--------ccCCCCC
Confidence 3457999999871 24677777776654 222321 1121111 1100 00011 1344 3
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 541 VVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 541 ~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
.||+|+|. ||++.|++-|++.|+
T Consensus 364 liRlSvGl----Ed~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 364 LIRLSVGL----EDPDDLIADLEQALE 386 (386)
T ss_dssp EEEEE--S----S-HHHHHHHHHHHHH
T ss_pred eeEEEecc----CCHHHHHHHHHHhcC
Confidence 99999997 899999998887664
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-17 Score=174.27 Aligned_cols=304 Identities=13% Similarity=0.056 Sum_probs=190.3
Q ss_pred HHHHHHHHHh----CC--CCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 183 KIRKRIMDFM----NI--SEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 183 ~~r~~ia~~l----ga--~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++|+.|++++ |. +++ ..|++|+|+++++.+++..+ +++||+|++....+.... ..++..|++++.++.
T Consensus 71 ~lr~aia~~~~~~~g~~~~~~-~~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~ 144 (395)
T PRK08175 71 RLRRAISRWYQDRYDVDIDPE-SEAIVTIGSKEGLAHLMLAT-LDHGDTVLVPNPSYPIHI----YGAVIAGAQVRSVPL 144 (395)
T ss_pred HHHHHHHHHHHHHhCCCCCCC-CcEEEccCcHHHHHHHHHHh-CCCCCEEEEcCCCCcchH----HHHHHcCCeEEEEec
Confidence 5556666554 44 333 14999999999999999998 899999776544332122 223567999999998
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCCCcC----CCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYM---WM-SVAAEKGWHVLLDATALG----SKDMD 328 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa~~~----~~d~~ 328 (588)
+. ++ ...++++++++. ..++++++++++++||||..++.+ +| ++|+++|+++|+|.+..- +....
T Consensus 145 ~~-~~-~~~~~l~~~l~~-----~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~ 217 (395)
T PRK08175 145 VE-GV-DFFNELERAIRE-----SYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAP 217 (395)
T ss_pred cc-CC-CcHHHHHHHHhh-----ccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCc
Confidence 73 22 347888887761 124789999999999999999995 46 889999999999998321 11011
Q ss_pred CC-CCCC-CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 329 TL-GLSL-FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 329 ~l-~l~~-~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
.+ .+.. ....+++.|+.|.||.+..++|+++.++++++.+...... + ..++..
T Consensus 218 ~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~~~~~~~~~------------------------~-~~~~~~ 272 (395)
T PRK08175 218 SIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSY------------------------H-DYGTFT 272 (395)
T ss_pred chhcCCCcccCEEEEeeccccccCcchhheeeeCCHHHHHHHHHHHhh------------------------c-ccCCCc
Confidence 11 1111 1134677999999985445689999888877765432210 0 011111
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGT 486 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~ 486 (588)
..+ .+...+|+..... ++.+.++.+..++++.+.|+.+ ++.+..| ..|..+-+.+.+.- .
T Consensus 273 ~~q----~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~L~~~----------~~~~~~p----~~g~~i~i~l~~~~-~ 332 (395)
T PRK08175 273 PLQ----VAAIAALEGDQQC-VRDIAEQYKRRRDVLVKGLHEA----------GWMVEMP----KASMYVWAKIPEPY-A 332 (395)
T ss_pred HHH----HHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHc----------CCcccCC----CEEEEEEEECCccc-C
Confidence 111 1222334321111 4556666677778888888874 2333332 23455556655310 0
Q ss_pred CcCHHHHH-HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 487 RIDPALVQ-KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 487 ~i~~~~v~-~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
.++...+. +++++.||.|.+|.... . .+...+|+++. .+.+.+...++.|+++
T Consensus 333 ~~~~~~~~~~l~~~~gv~v~p~~~f~----------------~--------~~~~~lRis~~--~~~~~~~~al~~l~~~ 386 (395)
T PRK08175 333 AMGSLEFAKKLLNEAKVCVSPGIGFG----------------D--------YGDTHVRFALI--ENRDRIRQAIRGIKAM 386 (395)
T ss_pred CCCHHHHHHHHHHhCCEEEeCchhhC----------------c--------CCCCeEEEEeC--CCHHHHHHHHHHHHHH
Confidence 12345554 56678999998874321 0 12238999986 4789999999999988
Q ss_pred hhhhh
Q 037063 566 LDADF 570 (588)
Q Consensus 566 l~~~~ 570 (588)
+.+..
T Consensus 387 l~~~~ 391 (395)
T PRK08175 387 FRADG 391 (395)
T ss_pred HHhcC
Confidence 87543
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-17 Score=173.10 Aligned_cols=161 Identities=14% Similarity=0.077 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcC-CCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVY-DHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~-e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
...++.+.+.++++.|.. + .+.++|+++|+.+++.++ +++||+|+++. .|.+ ....+....++.|+++.+++.
T Consensus 60 nPtv~~lE~~la~leg~~---~-av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~-T~~~~~~~l~~~Gi~v~~vd~ 133 (432)
T PRK06702 60 NPTLAAFEQKLAELEGGV---G-AVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGG-TFNLFGVSLRKLGIDVTFFNP 133 (432)
T ss_pred CcHHHHHHHHHHHHhCCC---c-EEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHH-HHHHHHHHHHHCCCEEEEECC
Confidence 345678999999999984 2 778999999999999998 89999977554 4443 333334446788999999865
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
.+|+++++++|+ ++|++|++.+++|+++.+.|+++| ++|+++|+++++|++-..|....++. .
T Consensus 134 -----~~d~~~l~~~I~--------~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~~~pl~---~ 197 (432)
T PRK06702 134 -----NLTADEIVALAN--------DKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFE---H 197 (432)
T ss_pred -----CCCHHHHHHhCC--------cCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchhhCChhh---c
Confidence 268899999998 789999999999999999999999 99999999999999976664344333 2
Q ss_pred CCcEEEeccCccCCCCCCceEEEEE
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFV 360 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v 360 (588)
++|+++.|..|++|.+..++|.+++
T Consensus 198 GADIvv~S~TKy~~Ghsd~l~G~v~ 222 (432)
T PRK06702 198 GANIIVHSTTKYIDGHASSLGGIVI 222 (432)
T ss_pred CCCEEEEccccccCCCcceeceEEE
Confidence 3999999999977633455666665
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=172.36 Aligned_cols=271 Identities=14% Similarity=0.091 Sum_probs=179.8
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
.++|+.+++++|+++++ |++|+|+++++.+++.. +.+| +|++ ...|+. + ...++..|.+++.++
T Consensus 50 ~~lr~~la~~~~~~~~~--i~~t~G~~~~i~~~~~~--l~~g-~vl~~~p~y~~--~---~~~~~~~g~~~~~~~----- 114 (330)
T TIGR01140 50 DELRAAAAAYYGLPAAS--VLPVNGAQEAIYLLPRL--LAPG-RVLVLAPTYSE--Y---ARAWRAAGHEVVELP----- 114 (330)
T ss_pred HHHHHHHHHHhCCChhh--EEECCCHHHHHHHHHHH--hCCC-eEEEeCCCcHH--H---HHHHHHcCCEEEEeC-----
Confidence 68999999999997665 99999999999998766 4577 5554 334432 2 345677899998876
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCc--CCC-CCCCCCCC
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATAL--GSK-DMDTLGLS 333 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~--~~~-d~~~l~l~ 333 (588)
|++++++.+. ++++|++++++|+||..+|.++ | ++|+++|++||+|.+.. .+. ++..+ ..
T Consensus 115 ---d~~~l~~~~~---------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~ 181 (330)
T TIGR01140 115 ---DLDRLPAALE---------ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQ-AA 181 (330)
T ss_pred ---CHHHHHhhcc---------cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhH-hc
Confidence 5688887774 3678999999999999999665 5 67789999999999953 221 11111 11
Q ss_pred CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhH
Q 037063 334 LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSK 413 (588)
Q Consensus 334 ~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~ 413 (588)
....++++.|++|.||.+..++|+++++++.++.+...... . +.+..
T Consensus 182 ~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~~~~--~--------------------------~~s~~----- 228 (330)
T TIGR01140 182 RFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLARLREALGP--W--------------------------TVNGP----- 228 (330)
T ss_pred cCCCEEEEEecchhhcCchhhhhheeCCHHHHHHHHhcCCC--C--------------------------CchHH-----
Confidence 22357899999999995335579999998887766543311 0 01111
Q ss_pred HHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHH
Q 037063 414 LVECKGLDHADALG-LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPAL 492 (588)
Q Consensus 414 ~al~~aL~~l~~~G-~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~ 492 (588)
+...+.+.++..+ .+.+.++++.+.+++.+.|+++ +.+++.+ ..+..+.+.+.+ ..+
T Consensus 229 -~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~-----~~~~f~~~~~~~-------~~~ 286 (330)
T TIGR01140 229 -ARAAGRAALADTAWQAATRARLAAERARLAALLARL---------GGLEVVG-----GTALFLLVRTPD-------AAA 286 (330)
T ss_pred -HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhC---------CCceECC-----CCCeEEEEEcCC-------HHH
Confidence 1123333333322 3566788888999999999875 3344432 123333333322 455
Q ss_pred HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHH
Q 037063 493 VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 493 v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l 562 (588)
+.+.|.++||.+.+|.... . .+.++||++++. ..++ ++|+.+|
T Consensus 287 l~~~l~~~gi~v~pg~~f~----------------~--------~~~~~iRi~~~~--~~~~-~~~~~~l 329 (330)
T TIGR01140 287 LHEALARRGILIRDFDNFP----------------G--------LDPRYLRFALPT--DEEN-DRLEEAL 329 (330)
T ss_pred HHHHHHHCCEEEEECCCCC----------------C--------CCCCEEEEEecC--HHHH-HHHHHhh
Confidence 6666667899999885420 0 122389999873 3355 8888765
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-17 Score=174.60 Aligned_cols=298 Identities=13% Similarity=0.052 Sum_probs=185.5
Q ss_pred HHHHHHHHHh----C----CCCCCceEEEecCHHHHHHHHHHhCCCCCCCe--EEEcCCCchhHHHHHHHHHHhcCCEEE
Q 037063 183 KIRKRIMDFM----N----ISEDDYTLVFTANQSSAFKLLAESYPFYSNPR--LLTVYDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 183 ~~r~~ia~~l----g----a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~--ll~~~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
++|+.|++++ | ++++ ..|++|+|+++|+.+++..+ +++||+ |+++...+.. + ...++..|++++
T Consensus 68 ~lr~aia~~~~~~~~~~~~~~~~-~~i~it~Ga~~al~~~~~~l-~~~gd~~~vlv~~P~y~~-~---~~~~~~~g~~~~ 141 (393)
T TIGR03538 68 ELRQAIARWLERRFDLPTGVDPE-RHVLPVNGTREALFAFAQAV-INPGQAPLVVMPNPFYQI-Y---EGAALLAGAEPY 141 (393)
T ss_pred HHHHHHHHHHHHhhCCcccCCCC-ceEEECCCcHHHHHHHHHHH-cCCCCcceEEecCCCCcc-h---HHHHHhcCCeEE
Confidence 6777777776 3 4443 24999999999999999998 899986 6665544331 2 345677899999
Q ss_pred EEeccCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC-CCC
Q 037063 253 SAEFAWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG-SKD 326 (588)
Q Consensus 253 ~v~~~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~-~~d 326 (588)
.++++.. +..+|.+++++++. +++++|+++.++||||..++.++ | ++|+++|++||+|.+-.- -.+
T Consensus 142 ~v~~~~~~~~~~d~~~l~~~~~--------~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~ 213 (393)
T TIGR03538 142 FLNCTAENGFLPDFDAVPESVW--------RRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFD 213 (393)
T ss_pred EeeccccCCCCCCHHHHHHHHh--------hcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccC
Confidence 9998633 24578999998887 57899999999999999999655 5 778999999999998321 100
Q ss_pred ----CC-------CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccc
Q 037063 327 ----MD-------TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLD 395 (588)
Q Consensus 327 ----~~-------~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~ 395 (588)
.. .++.....--+++.|+.|.||.+..++|+++..+++++.+.......
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~~~~~~~~~~~-------------------- 273 (393)
T TIGR03538 214 EGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYRTYH-------------------- 273 (393)
T ss_pred CCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecCHHHHHHHHHHHHhh--------------------
Confidence 00 01110111237889999987755567999998887776554322100
Q ss_pred ccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE
Q 037063 396 ESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS 475 (588)
Q Consensus 396 ~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i 475 (588)
..+.+.+.+ .++..++.. ++ -+++..++.++..+++.+.|.++ +.+..| ..|..
T Consensus 274 -----~~~~~~~~q----~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~L~~~-----------~~~~~p----~gg~f 327 (393)
T TIGR03538 274 -----GCAMPIPTQ----LASIAAWND-EQ-HVRENRALYREKFAAVLEILGQV-----------LDLELP----DAGFY 327 (393)
T ss_pred -----ccCcCHHHH----HHHHHHhcC-hH-HHHHHHHHHHHHHHHHHHHHHhh-----------CcccCC----CeeEE
Confidence 000111111 121223321 11 14555566666666777777652 112222 12333
Q ss_pred EEEEeecCCCCCcCHHHHH-HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHH
Q 037063 476 LAFNVFDWNGTRIDPALVQ-KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFED 554 (588)
Q Consensus 476 v~f~~~~~~g~~i~~~~v~-~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eD 554 (588)
+-+.++ .+...+. ++++++||.+.+|....... . ....+.++||+|++. +.++
T Consensus 328 ~~~~~~------~~~~~~~~~l~~~~gV~v~pg~~f~~~~-------------~-----~~~~~~~~~Ris~~~--~~~~ 381 (393)
T TIGR03538 328 LWPKVP------GDDEAFARALYEEENVTVLPGRFLAREA-------------E-----GVNPGEGRVRIALVA--PLEE 381 (393)
T ss_pred EEEECC------CCHHHHHHHHHHHCCEEEeCCccccccc-------------c-----CCCCCCCEEEEEecC--CHHH
Confidence 334443 1234444 55678999999886431000 0 001223499999875 6899
Q ss_pred HHHHHHHHHHhh
Q 037063 555 TYRLWAFVSRFL 566 (588)
Q Consensus 555 v~~li~~l~~~l 566 (588)
++..++.|++|+
T Consensus 382 l~~~l~~l~~~~ 393 (393)
T TIGR03538 382 CVEAAERIRSFI 393 (393)
T ss_pred HHHHHHHHHHhC
Confidence 999998888764
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.4e-17 Score=173.71 Aligned_cols=173 Identities=13% Similarity=0.102 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
...+++.||++.|.+ + +++++|+++|+.+++.++ +++||+|++....+......+...++..|++++.++..
T Consensus 85 ~~~Le~~lA~leg~~--~--~iv~~sG~~Ai~~~l~al-~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~--- 156 (427)
T PRK07049 85 SEIVEDRLAVYEGAE--S--AALFSSGMSAIATTLLAF-VRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADG--- 156 (427)
T ss_pred HHHHHHHHHHHhCCC--c--EEEEccHHHHHHHHHHHH-hCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCC---
Confidence 358999999999863 3 788888889999999998 89999977665544434433345567789987666521
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH------cCcEEEEeCCCcCCCCCCCCCCC
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE------KGWHVLLDATALGSKDMDTLGLS 333 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~------~g~~vvvDaa~~~~~d~~~l~l~ 333 (588)
.+.+++++.|.+ ....+++++|.+..++||||.++|+++| ++++. ++++|++|.+-..+....++.
T Consensus 157 --~d~~~l~~~l~~---~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl~-- 229 (427)
T PRK07049 157 --LSEAAIGAAAEA---AAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLE-- 229 (427)
T ss_pred --CCHHHHHHHHHh---hccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCccc--
Confidence 467788877752 1112579999999999999999999999 88887 799999999844443223332
Q ss_pred CCCCcEEEeccCccCC-CCCCceEEEEEeCcchhccc
Q 037063 334 LFKPDFLICSFYKIFG-ENPSGFGCLFVKKSSASVLS 369 (588)
Q Consensus 334 ~~~~D~vv~S~~K~~G-~~P~G~G~L~v~~~~~~~l~ 369 (588)
..+|+++.|+.|.+| .+...+|+++.++++++.+.
T Consensus 230 -~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~ 265 (427)
T PRK07049 230 -HGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVR 265 (427)
T ss_pred -cCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHH
Confidence 348999999999887 22345899888877766554
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.6e-17 Score=171.01 Aligned_cols=289 Identities=10% Similarity=0.055 Sum_probs=184.4
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNL 261 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~ 261 (588)
.++|+.|++++++++++ |++|+|+++++.+++..+ .+|++|++....+. .....++..|++++.++.+..++
T Consensus 60 ~~Lr~aia~~~~v~~~~--I~it~G~~~~i~~~~~~l--~~g~~vlv~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~ 131 (360)
T PRK07392 60 RELRLALAQHHQLPPEW--ILPGNGAAELLTWAGREL--AQLRAVYLITPAFG----DYRRALRAFGATVKELPLPLDQP 131 (360)
T ss_pred HHHHHHHHHHhCcChhh--EEECCCHHHHHHHHHHHh--CCCCeEEEECCCcH----HHHHHHHHcCCeEEEEecccccC
Confidence 48999999999998776 999999999999999886 36788766554433 22456677899999999873222
Q ss_pred c----cCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCc--CCCC-CCC-CC-
Q 037063 262 R----IHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATAL--GSKD-MDT-LG- 331 (588)
Q Consensus 262 ~----i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~--~~~d-~~~-l~- 331 (588)
. .+.+++++.. +++++++++.++||||..++.++| ++++++++ +|+|.+.. .... ..+ +.
T Consensus 132 ~~~~~~~~~~~~~~~---------~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~ 201 (360)
T PRK07392 132 SPGLTLRLQTLPPQL---------TPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPC 201 (360)
T ss_pred CcccccCHHHHHHhc---------cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHH
Confidence 1 2344443321 468999999999999999999999 99999986 66699832 1100 001 11
Q ss_pred CCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchh
Q 037063 332 LSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVS 411 (588)
Q Consensus 332 l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~ 411 (588)
+....--+++.|+.|.||++..++|++++.++.++.+...... +. +..+.+
T Consensus 202 ~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~~~~~~~--~~-------------------------~s~~~q-- 252 (360)
T PRK07392 202 LAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRWQQWRDP--WP-------------------------VNGLAA-- 252 (360)
T ss_pred hhcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHHHhhCCC--CC-------------------------CCHHHH--
Confidence 1112223788899999986567799999988877665432211 00 111111
Q ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHH
Q 037063 412 SKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPA 491 (588)
Q Consensus 412 ~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~ 491 (588)
.++..+|+.- .. .+.+.++.+..++.+.+.|+++ +++.++. ..+..+.+.+.. +..
T Consensus 253 --~~~~~~l~~~-~~-~~~~~~~~~~~r~~l~~~L~~~---------~~~~~~~-----~~~~fl~~~~~~------~~~ 308 (360)
T PRK07392 253 --AAAIAALADR-DF-QQQTWAWLPPAREALFQGLASL---------PGLTPLP-----SAANFLLVQSQG------SAL 308 (360)
T ss_pred --HHHHHHhccH-HH-HHHHHHHHHHHHHHHHHHHHhC---------CCcEECC-----CCCCEEEEEcCC------CHH
Confidence 2233344321 11 2334455666677788888764 4555532 223444333321 244
Q ss_pred HH-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 492 LV-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 492 ~v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
++ .+++++.||.|+.|..... .+.++||++++ +.++.++|.++|.+++..
T Consensus 309 ~l~~~ll~~~gv~v~pg~~f~~------------------------~~~~~iRi~~~---~~~~~~~l~~al~~~~~~ 359 (360)
T PRK07392 309 QLQEKLLQQHRILIRDCLSFPE------------------------LGDRYFRVAVR---TEAENQRLLEALAAILAN 359 (360)
T ss_pred HHHHHHHhhCCEEEEeCCCCCC------------------------CCCCEEEEEeC---CHHHHHHHHHHHHHHhhc
Confidence 45 4567889999998843210 12239999988 467778888888887653
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-17 Score=178.22 Aligned_cols=305 Identities=13% Similarity=0.109 Sum_probs=187.2
Q ss_pred HHHHHHHHHhC--------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHH-hcCCEEEE
Q 037063 183 KIRKRIMDFMN--------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSK-KRGARVSS 253 (588)
Q Consensus 183 ~~r~~ia~~lg--------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~-~~G~~v~~ 253 (588)
++|+.||++++ +++++ |++|+|+++|+.+++.++ .+|||.|+++..++.... ..++ +.|++++.
T Consensus 98 ~LR~aiA~~l~~~~g~~v~v~pe~--Ivit~Ga~~al~~l~~~l-~~pGD~Vlv~~P~Y~~~~----~~~~~~~G~~vv~ 170 (496)
T PLN02376 98 KFRQAIAHFMGKARGGKVTFDPER--VVMSGGATGANETIMFCL-ADPGDVFLIPSPYYAAFD----RDLRWRTGVEIIP 170 (496)
T ss_pred HHHHHHHHHHHHHhCCCCcCChhh--EEEccchHHHHHHHHHHh-CCCCCEEEECCCCccchH----HHHHhhCCCEEEE
Confidence 56777777664 56655 999999999999999999 899999887766554222 2233 57999999
Q ss_pred EeccC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcC----C
Q 037063 254 AEFAW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALG----S 324 (588)
Q Consensus 254 v~~~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~----~ 324 (588)
++++. .+..++.+++++++... .....++++|++++++||||..+|.+++ ++|+++|++||+|.+... +
T Consensus 171 v~~~~~~~~~~~~~~le~a~~~a--~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~ 248 (496)
T PLN02376 171 VPCSSSDNFKLTVDAADWAYKKA--QESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAG 248 (496)
T ss_pred EeCCCCccCcCCHHHHHHHHHHH--HhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCC
Confidence 99863 34578999998776410 1112578999999999999999998774 678899999999998432 1
Q ss_pred CCCCC---C----CCCCCCCc--EEEeccCccCCCCCCceEEEEEeCcch-hcccCCCCCCCceEeeecCCCcccccccc
Q 037063 325 KDMDT---L----GLSLFKPD--FLICSFYKIFGENPSGFGCLFVKKSSA-SVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 325 ~d~~~---l----~l~~~~~D--~vv~S~~K~~G~~P~G~G~L~v~~~~~-~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
....+ + +.....+| .++.|++|.||.+..++|+++..++.+ +.++..... +.
T Consensus 249 ~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~~~--~~---------------- 310 (496)
T PLN02376 249 GDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSF--GL---------------- 310 (496)
T ss_pred CCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHhhc--CC----------------
Confidence 11111 1 11111124 346899999986567799999865433 322211100 00
Q ss_pred cccccccCCCCCccchhhHHHHHHHHH---HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCC
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLD---HADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFD 471 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~---~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~ 471 (588)
.+.+.+ .++...|+ ++++. +.+..++.+...+.+.+.|.+. +++++.+
T Consensus 311 ---------vs~~~Q----~a~~~~L~d~~~~~~~-l~~~r~~l~~r~~~l~~~L~~~----------gi~~~~~----- 361 (496)
T PLN02376 311 ---------VSSQTQ----LMLASMLSDDQFVDNF-LMESSRRLGIRHKVFTTGIKKA----------DIACLTS----- 361 (496)
T ss_pred ---------CCHHHH----HHHHHHhCChhHHHHH-HHHHHHHHHHHHHHHHHHHHHC----------CCcccCC-----
Confidence 111111 12222222 12221 3444556666667777777763 2333322
Q ss_pred cccE-EEEEeecC-CC-CCc-CHHH-HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec
Q 037063 472 RGPS-LAFNVFDW-NG-TRI-DPAL-VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL 546 (588)
Q Consensus 472 rg~i-v~f~~~~~-~g-~~i-~~~~-v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl 546 (588)
.++. +-+.+... .. ... +... ..+++++.||.+.+|..+.. .+.+++|+++
T Consensus 362 ~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~------------------------~~~g~~Ri~f 417 (496)
T PLN02376 362 NAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRC------------------------TEPGWFRICF 417 (496)
T ss_pred CceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCC------------------------CCCCEEEEEe
Confidence 2433 33344321 10 111 1123 34556678999999865420 1123999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhh
Q 037063 547 GCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 547 g~~~t~eDv~~li~~l~~~l~~ 568 (588)
+.. +.++++..++.|++++.+
T Consensus 418 a~~-~~~~l~~al~rl~~~l~~ 438 (496)
T PLN02376 418 ANM-DDDTLHVALGRIQDFVSK 438 (496)
T ss_pred eCC-CHHHHHHHHHHHHHHHHH
Confidence 853 468899889888888753
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.2e-17 Score=172.92 Aligned_cols=344 Identities=11% Similarity=0.057 Sum_probs=218.4
Q ss_pred CCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|+|..+ .|.-++.+.+++.+.+.... ..+ ..+ + ..+...+
T Consensus 34 dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~--------------------~~~-------~--~~~~~~~ 83 (413)
T cd00610 34 DGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLT-HFS--------------------LGF-------F--YNEPAVE 83 (413)
T ss_pred CCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCc-Ccc--------------------Ccc-------c--CCHHHHH
Confidence 5678899876 44567788888766653210 000 000 0 1466789
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEE-EcCCCchhHHHHHHHHHHh---------cCCEEE
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLL-TVYDHENEAAALMIESSKK---------RGARVS 252 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll-~~~e~~s~~~~~~~~~a~~---------~G~~v~ 252 (588)
+.+.++++++.+.+ .|+|++|+++|+..++..+. +.++++|+ ....||.....+ ...... .+..+.
T Consensus 84 l~~~l~~~~~~~~~--~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (413)
T cd00610 84 LAELLLALTPEGLD--KVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGA-LSLTGSKKYRGGFGPLLPGVL 160 (413)
T ss_pred HHHHHHHhCCCCCC--EEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHH-HHhcCCccccccCCCCCCCcE
Confidence 99999999997544 49999999999999888652 35677755 555677633333 222111 123455
Q ss_pred EEeccCC-----CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCc
Q 037063 253 SAEFAWP-----NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATAL 322 (588)
Q Consensus 253 ~v~~~~~-----~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~ 322 (588)
.+|.+.+ +...++++|++.++. ...++++|++..+++++|...| +++| ++|+++|+++++|.++.
T Consensus 161 ~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~ 235 (413)
T cd00610 161 HVPYPYRYRPPAELADDLEALEEALEE-----HPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQT 235 (413)
T ss_pred EeCCCccccchhhHHHHHHHHHHHHhc-----CCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 6665411 123377888888871 1136789999999999999998 8889 99999999999999965
Q ss_pred C-CCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcc--cCCCCCCCceEeeecCCCccccccccccc
Q 037063 323 G-SKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVL--SGSTSSVSTIMGIEPSFSEIIELETLDES 397 (588)
Q Consensus 323 ~-~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l--~~~~~g~~g~v~~~~~~~~~~~~~~~~~~ 397 (588)
. +.. ...++.....+|++ ++.|.+|. +.++|+++.++++++.+ .....
T Consensus 236 g~g~~g~~~~~~~~~~~~d~~--t~sK~l~~-g~~~g~~~~~~~~~~~~~~~~~~~------------------------ 288 (413)
T cd00610 236 GFGRTGKMFAFEHFGVEPDIV--TLGKGLGG-GLPLGAVLGREEIMDAFPAGPGLH------------------------ 288 (413)
T ss_pred CCCcCcchhhHhhcCCCCCeE--EEcccccC-ccccEEEEEcHHHHHhhccCCCCC------------------------
Confidence 3 110 00111112247865 45598884 46699999998887765 11110
Q ss_pred ccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE
Q 037063 398 SQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA 477 (588)
Q Consensus 398 ~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~ 477 (588)
.+|.....+ ..++..++|+.+++ +.+.++++.+.+++.+.|+.+... .+.+.-. ...|+++.
T Consensus 289 ----~~t~~~~~~-~~~a~~a~l~~l~~---~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~~-----~~~g~~~~ 350 (413)
T cd00610 289 ----GGTFGGNPL-ACAAALAVLEVLEE---EGLLENAAELGEYLRERLRELAEK-----HPLVGDV-----RGRGLMIG 350 (413)
T ss_pred ----CCCCCcCHH-HHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhh-----CCcEEEe-----ecCceEEE
Confidence 111111111 12455567777765 467788889999999988875210 0111111 13578888
Q ss_pred EEeecCCCC----CcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHH
Q 037063 478 FNVFDWNGT----RIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFE 553 (588)
Q Consensus 478 f~~~~~~g~----~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~e 553 (588)
+.+.+..+. ......+.+.|.++||.+.++. ...+|+++++.+|.+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~------------------------------~~~lR~~~~~~~t~~ 400 (413)
T cd00610 351 IELVKDRATKPPDKELAAKIIKAALERGLLLRPSG------------------------------GNVIRLLPPLIITEE 400 (413)
T ss_pred EEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC------------------------------CCEEEEECCCcCCHH
Confidence 887652110 0224556677778899987651 128999999999999
Q ss_pred HHHHHHHHHHHhh
Q 037063 554 DTYRLWAFVSRFL 566 (588)
Q Consensus 554 Dv~~li~~l~~~l 566 (588)
||+++++.|.+.|
T Consensus 401 ~i~~~~~~l~~~l 413 (413)
T cd00610 401 EIDEGLDALDEAL 413 (413)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998754
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-16 Score=170.14 Aligned_cols=289 Identities=13% Similarity=0.097 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCe-EE-EcCCCchhHHHHHHHHHH---------hcCC
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPR-LL-TVYDHENEAAALMIESSK---------KRGA 249 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~-ll-~~~e~~s~~~~~~~~~a~---------~~G~ 249 (588)
..++.++++++++.+ +...|+|++|+++|+..++... ..+|++ ++ ....||...... ..... ..+.
T Consensus 87 ~~~la~~l~~~~~~~-~~~~v~~~~sgsea~~~al~~~-~~~g~~~ii~~~~~yhg~~~~~-~~~~~~~~~~~~~~~~~~ 163 (398)
T PRK03244 87 QIALAERLVELLGAP-EGGRVFFCNSGAEANEAAFKLA-RLTGRTKIVAAEGGFHGRTMGA-LALTGQPAKRAPFEPLPG 163 (398)
T ss_pred HHHHHHHHHHhCCCC-CCCEEEEeCchHHHHHHHHHHH-HHHCCCeEEEECCCcCCccHHH-HhccCCcccccCCCCCCC
Confidence 358888999998853 1135999999999999998865 335643 54 445666533222 11110 0011
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCcC-
Q 037063 250 RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATALG- 323 (588)
Q Consensus 250 ~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~~- 323 (588)
.+..+|. .|.+++++.+. +++++|++..++|++|.+.| +++| ++|+++|+++|+|.++..
T Consensus 164 ~~~~~~~------~d~~~l~~~~~--------~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~ 229 (398)
T PRK03244 164 GVEHVPY------GDVDALAAAVD--------DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGI 229 (398)
T ss_pred CceEeCC------CCHHHHHHhhc--------CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 2233332 26788888886 67899999999999999998 8889 999999999999999642
Q ss_pred CCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccccccccc
Q 037063 324 SKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSK 401 (588)
Q Consensus 324 ~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e 401 (588)
+.. .-.+......+|++ ++.|.+|. +..+|++++++++++.+.....+ . .|
T Consensus 230 gr~g~~~~~~~~~~~pDi~--t~sK~l~~-G~~ig~~~~~~~~~~~~~~~~~~--~--------------------t~-- 282 (398)
T PRK03244 230 GRTGAWFAHQHDGVTPDVV--TLAKGLGG-GLPIGACLAFGPAADLLTPGLHG--S--------------------TF-- 282 (398)
T ss_pred cccchHHhhhhhCCCCCEE--EEchhhhC-CcccEEEEEcHHHHhhccCCCCc--C--------------------CC--
Confidence 210 01111223348876 55798873 45699999999877665432211 0 01
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEee
Q 037063 402 FPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVF 481 (588)
Q Consensus 402 ~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~ 481 (588)
+ .+... .++..++|+.+.+ +.+.++++++.+++++.|.++.| +.+.-+. .+|.++.+.+.
T Consensus 283 -~-~~~~~---~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~-------~~~~~v~-----g~g~~~~i~~~ 342 (398)
T PRK03244 283 -G-GNPVA---CAAALAVLDTIAS---EGLLENAERLGEQLRAGIEALGH-------PLVDHVR-----GRGLLLGIVLT 342 (398)
T ss_pred -C-CCHHH---HHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhcCC-------CceeeEe-----eccEEEEEEEe
Confidence 0 11111 1333455554443 56788999999999999998733 2221111 24667777664
Q ss_pred cCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHH
Q 037063 482 DWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAF 561 (588)
Q Consensus 482 ~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~ 561 (588)
.. ....+.+.+.++||.++.. +..+||++++...+.+||+++++.
T Consensus 343 ~~-----~~~~~~~~l~~~Gv~~~~~------------------------------~~~~iR~~p~~~~t~~~i~~~~~~ 387 (398)
T PRK03244 343 AP-----VAKAVEAAAREAGFLVNAV------------------------------APDVIRLAPPLIITDAQVDAFVAA 387 (398)
T ss_pred cc-----HHHHHHHHHHHCCeEEeec------------------------------CCCEEEEECCCcCCHHHHHHHHHH
Confidence 31 2456777777889998642 112899999999999999999999
Q ss_pred HHHhhhh
Q 037063 562 VSRFLDA 568 (588)
Q Consensus 562 l~~~l~~ 568 (588)
|.+.++.
T Consensus 388 l~~~l~~ 394 (398)
T PRK03244 388 LPAILDA 394 (398)
T ss_pred HHHHHHh
Confidence 9998754
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-16 Score=167.03 Aligned_cols=270 Identities=15% Similarity=0.171 Sum_probs=181.4
Q ss_pred HHHHHHHHHHhC---CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 182 SKIRKRIMDFMN---ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 182 ~~~r~~ia~~lg---a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
.++|+.|+++++ +++++ |++|+|+++++.+++.++ ++|++....+ ......++..|++++.++.+
T Consensus 59 ~~Lr~aia~~~~~~~~~~~~--i~it~Ga~~~i~~~~~~~-----d~v~v~~P~y----~~~~~~~~~~g~~~~~v~~~- 126 (335)
T PRK14808 59 EELIEKILSYLDTDFLSKNN--VSVGNGADEIIYVMMLMF-----DRSVFFPPTY----SCYRIFAKAVGAKFLEVPLT- 126 (335)
T ss_pred HHHHHHHHHHhCCCCCCcce--EEEcCCHHHHHHHHHHHh-----CcEEECCCCH----HHHHHHHHHcCCeEEEecCC-
Confidence 589999999998 76665 999999999999999987 5666554433 23356778889999999987
Q ss_pred CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCC--cCCCCCCCCCCCCC
Q 037063 259 PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATA--LGSKDMDTLGLSLF 335 (588)
Q Consensus 259 ~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~--~~~~d~~~l~l~~~ 335 (588)
+++.++... + .+++++++++++||||..++.+++ +++ +++++||+|.+- +.+....++ +...
T Consensus 127 ~~~~~~~~~----~---------~~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~-~~~~ 191 (335)
T PRK14808 127 KDLRIPEVN----V---------GEGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDL-LKKY 191 (335)
T ss_pred CcCCCChhH----c---------cCCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHH-HHhC
Confidence 455443221 2 246899999999999999999999 777 689999999982 222111110 1111
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHH
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLV 415 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~a 415 (588)
.--+++.|+.|.||.+..++|+++.++++++.+....... + ...+.+ .+
T Consensus 192 ~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~~~~-~--------------------------~~~~~q----~a 240 (335)
T PRK14808 192 ENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVRLPF-N--------------------------VSYVSQ----MF 240 (335)
T ss_pred CCEEEEEechhhccCcccceEEEEeCHHHHHHHHHhcCCC-C--------------------------CCHHHH----HH
Confidence 2347888999999954566999999988877664332110 0 011111 22
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHH
Q 037063 416 ECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQK 495 (588)
Q Consensus 416 l~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~ 495 (588)
...+++..+. +++..++....++++.+.|.++ +++++.+ .|+++-+.+.+ .+...+.+
T Consensus 241 ~~~~l~~~~~--~~~~~~~~~~~r~~l~~~L~~~----------g~~~~~~-----~g~f~~~~l~~-----~~~~~~~~ 298 (335)
T PRK14808 241 AKVALDHREI--FEERTKFIVEERERMKSALREM----------GYRITDS-----RGNFVFIFMEK-----EEKERLLE 298 (335)
T ss_pred HHHHHhCHHH--HHHHHHHHHHHHHHHHHHHHHC----------CCEECCC-----CCeEEEEeCCC-----ccHHHHHH
Confidence 2344443222 2333444455567777888764 3455432 46666666653 23567888
Q ss_pred HHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 496 LADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 496 ~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
.|.++||.|+. | . ..||||++ +.++.++++++|++|
T Consensus 299 ~l~~~Gi~V~~---~--------------------------~--~~~Risi~---~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 299 HLRAKNIAVRS---F--------------------------R--EGVRITIG---KREENDMILKELEVF 334 (335)
T ss_pred HHHHCCeEEEE---C--------------------------C--CCeEEecC---CHHHHHHHHHHHHhh
Confidence 88899999983 1 1 17999988 689999999999876
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-16 Score=172.33 Aligned_cols=301 Identities=12% Similarity=0.047 Sum_probs=183.7
Q ss_pred HHHHHHHHHh----CC--CCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 183 KIRKRIMDFM----NI--SEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 183 ~~r~~ia~~l----ga--~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++|+.+++++ |. +++ .+|++|+|+++|+.+++.++ +.+||+|++....+... ...++..|++++.++.
T Consensus 72 ~lr~aia~~~~~~~g~~~~~~-~~I~it~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~----~~~~~~~g~~v~~v~~ 145 (405)
T PRK09148 72 GLRRAQAAYYARRFGVKLNPD-TQVVATLGSKEGFANMAQAI-TAPGDVILCPNPSYPIH----AFGFIMAGGVIRSVPA 145 (405)
T ss_pred HHHHHHHHHHHHHhCCCCCCC-CcEEEcCChHHHHHHHHHHh-cCCCCEEEEcCCCCccc----HHHHHhcCCEEEEEeC
Confidence 5666666665 54 443 14999999999999999999 89999977554433312 2344567999999998
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC----CCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG----SKDMD 328 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~----~~d~~ 328 (588)
+. ++. ..+++++++.. ..+++++++++.++||||..+|.++ | ++|+++|++||+|.+..- +....
T Consensus 146 ~~-~~~-~~~~l~~~~~~-----~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~ 218 (405)
T PRK09148 146 EP-DEE-FFPALERAVRH-----SIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPP 218 (405)
T ss_pred CC-CCC-CccCHHHHHhh-----ccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCC
Confidence 63 221 24556655541 1157899999999999999999865 5 789999999999998321 10011
Q ss_pred CC-CCCC-CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 329 TL-GLSL-FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 329 ~l-~l~~-~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
.+ .+.. ....+++.|++|.+|.+..++|+++.++++++.+....... ..+...
T Consensus 219 s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~~~~i~~l~~~~~~~-------------------------~~~~~~ 273 (405)
T PRK09148 219 SVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNERLIAALTRVKSYL-------------------------DYGAFT 273 (405)
T ss_pred ChhhCCCccCcEEEEeccccccCCcchheeeeeCCHHHHHHHHHHHHHh-------------------------ccCCCh
Confidence 11 1111 11345689999999854456999999888877664322100 001111
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE-EEEEeecCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS-LAFNVFDWNG 485 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i-v~f~~~~~~g 485 (588)
+.+ .++...|+.-+.. ++...++++..++++.+.|.++ ++.+..| .++. +-+.+++.-
T Consensus 274 ~~q----~~~~~~L~~~~~~-~~~~~~~~~~~r~~l~~~L~~~----------~~~~~~p-----~~g~f~~~~l~~~~- 332 (405)
T PRK09148 274 PIQ----VAATAALNGPQDC-IAEMRELYKKRRDVLVESFGRA----------GWDIPPP-----AASMFAWAPIPEAF- 332 (405)
T ss_pred HHH----HHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHc----------CCccCCC-----CeeEEEEEECCCcc-
Confidence 111 1222333211111 4555666677777888888764 2233222 2343 333443210
Q ss_pred CCcCHHHH-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 486 TRIDPALV-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 486 ~~i~~~~v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
..++...+ ..++++.||.+..|.... . .+.+++||+++ .+.+++...++.|.+
T Consensus 333 ~~~~~~~~~~~ll~~~gV~v~pg~~f~----------------~--------~~~~~~Ri~~~--~~~~~l~~al~~l~~ 386 (405)
T PRK09148 333 RHLGSLEFSKLLVEKADVAVAPGVGFG----------------E--------HGDGYVRIALV--ENEQRIRQAARNIKR 386 (405)
T ss_pred CCCCHHHHHHHHHHhCCEEEeCchhhC----------------C--------CCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 01233444 456678999999884321 0 11238999987 467888888888887
Q ss_pred hhhh
Q 037063 565 FLDA 568 (588)
Q Consensus 565 ~l~~ 568 (588)
+++.
T Consensus 387 ~l~~ 390 (405)
T PRK09148 387 FLSS 390 (405)
T ss_pred HHHH
Confidence 7753
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-16 Score=171.26 Aligned_cols=299 Identities=13% Similarity=0.043 Sum_probs=184.7
Q ss_pred HHHHHHHHHh----CC---CCCCceEEEecCHHHHHHHHHHhCCCCC---CCeEEEcCCCchhHHHHHHHHHHhcCCEEE
Q 037063 183 KIRKRIMDFM----NI---SEDDYTLVFTANQSSAFKLLAESYPFYS---NPRLLTVYDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 183 ~~r~~ia~~l----ga---~~~e~~vvft~g~T~al~lv~~s~~~~~---gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
++|+.|++++ |. +++ ..|++|+|+++|+.+++.++ .++ ||+|++....+. .....++..|++++
T Consensus 69 ~lr~~ia~~~~~~~g~~~~~~~-~~i~it~G~~~al~~~~~~l-~~~~~~gd~vlv~~P~y~----~~~~~~~~~g~~~~ 142 (396)
T PRK09147 69 ALREAIAAWLERRYGLPALDPA-TQVLPVNGSREALFAFAQTV-IDRDGPGPLVVCPNPFYQ----IYEGAALLAGAEPY 142 (396)
T ss_pred HHHHHHHHHHHHHhCCCcCCcc-ceEEECCChHHHHHHHHHHH-cCCCCCCCEEEEcCCCcc----chHHHHHhcCCEEE
Confidence 4566666554 64 443 25999999999999999999 788 888776655443 12345567899999
Q ss_pred EEeccCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcCC-CC
Q 037063 253 SAEFAWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALGS-KD 326 (588)
Q Consensus 253 ~v~~~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~~-~d 326 (588)
.+|++.+ +..+|++++++.+. +++++++++.++||||..++.+++ ++|++++++||+|.+..-- .+
T Consensus 143 ~vp~~~~~~~~~d~~~l~~~~~--------~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~ 214 (396)
T PRK09147 143 FLNCDPANNFAPDFDAVPAEVW--------ARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFD 214 (396)
T ss_pred EeccCccccCccCHHHHHHHHh--------hccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccC
Confidence 9998633 24689999988876 578999999999999999987774 6788999999999983210 00
Q ss_pred -----CC------CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccc
Q 037063 327 -----MD------TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLD 395 (588)
Q Consensus 327 -----~~------~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~ 395 (588)
.. .++.....--+++.|+.|.||.+..++|+++.++++++.+....... +
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~~~~~~~~~~~-~------------------ 275 (396)
T PRK09147 215 EAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALLKKFLLYRTYH-G------------------ 275 (396)
T ss_pred CCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCHHHHHHHHHHhhhc-c------------------
Confidence 00 11111111237889999988764567999999888776554321100 0
Q ss_pred ccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE
Q 037063 396 ESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS 475 (588)
Q Consensus 396 ~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i 475 (588)
.+...+.+ .+...++.. .. -+.+..++.++.++.+.+.|.+. +.+..| ..|..
T Consensus 276 ------~~~~~~~q----~a~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~L~~~-----------~~~~~p----~~g~f 328 (396)
T PRK09147 276 ------CAMPPAVQ----AASIAAWND-EA-HVRENRALYREKFDAVTPILAPV-----------LDVQLP----DAGFY 328 (396)
T ss_pred ------cCCCHHHH----HHHHHHhcc-hh-HHHHHHHHHHHHHHHHHHHHHHh-----------cCCCCC----CeeEE
Confidence 00011111 121223321 11 13445555566666666666652 222222 22333
Q ss_pred EEEEeecCCCCCcCHHHH-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHH
Q 037063 476 LAFNVFDWNGTRIDPALV-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFED 554 (588)
Q Consensus 476 v~f~~~~~~g~~i~~~~v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eD 554 (588)
+-+.+. .+...+ .++++++||.+.+|....... . ....+.++||++++. +.++
T Consensus 329 ~~~~~~------~~~~~~~~~ll~~~gv~v~pg~~f~~~~-------------~-----~~~~~~~~iRi~~~~--~~~~ 382 (396)
T PRK09147 329 LWAKVP------GDDTEFARRLYADYNVTVLPGSYLAREA-------------H-----GVNPGAGRVRIALVA--PLAE 382 (396)
T ss_pred EEEECC------CCHHHHHHHHHHhCCEEEeCCccccccc-------------c-----CCCCCCCeEEEEecC--CHHH
Confidence 334443 123444 566678899999885321000 0 001223489999884 5788
Q ss_pred HHHHHHHHHHhhh
Q 037063 555 TYRLWAFVSRFLD 567 (588)
Q Consensus 555 v~~li~~l~~~l~ 567 (588)
++..++.|+++++
T Consensus 383 l~~~l~rl~~~~~ 395 (396)
T PRK09147 383 CVEAAERIVDFCR 395 (396)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888764
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=5e-16 Score=166.70 Aligned_cols=291 Identities=10% Similarity=0.053 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--------CCCC-Ce-EEEcCCCchhHHHHHHHHH----
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--------FYSN-PR-LLTVYDHENEAAALMIESS---- 244 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--------~~~g-d~-ll~~~e~~s~~~~~~~~~a---- 244 (588)
+...++.++++++++.+ .++|++++|+|+.+++..+. ..+| ++ |+....||......+ ...
T Consensus 83 ~~~~~l~~~l~~~~~~~----~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~-~~~~~~~ 157 (401)
T PRK00854 83 DQLAPLYEELAALTGSH----KVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIV-GFSTDPD 157 (401)
T ss_pred HHHHHHHHHHHhhCCCC----EEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHH-hccCCcc
Confidence 45678888999998862 39999999999988887661 1234 45 446666776333221 110
Q ss_pred -----HhcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcE
Q 037063 245 -----KKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWH 314 (588)
Q Consensus 245 -----~~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~ 314 (588)
......+..++. .|.++|++.|. +++++|++.++.|++|.+.| +++| ++|+++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~------~d~~~le~~i~--------~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~ 223 (401)
T PRK00854 158 ARGGFGPFTPGFRVVPF------GDAEALEAAIT--------PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVT 223 (401)
T ss_pred ccccCCCCCCCeEEeCC------CCHHHHHHHhC--------CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 001123444433 36789999987 68999999999999999998 8889 999999999
Q ss_pred EEEeCCCc-CCCCCCCC--CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccc
Q 037063 315 VLLDATAL-GSKDMDTL--GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIEL 391 (588)
Q Consensus 315 vvvDaa~~-~~~d~~~l--~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~ 391 (588)
+|+|+++. ++..-..+ ......+|+++++ |.++.+-..+|+++.++++++.+.....+ .
T Consensus 224 lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~ig~v~~~~~~~~~l~~~~~~--~-------------- 285 (401)
T PRK00854 224 LILDEIQTGLGRTGKLLAEEHEGIEADVTLIG--KALSGGFYPVSAVLSNSEVLGVLKPGQHG--S-------------- 285 (401)
T ss_pred EEEechhhCCCCCchHhHHhhcCCCCCEEEec--ccccCCccCeEEEEEcHHHHhcccCCCCC--C--------------
Confidence 99999976 43211001 1112347988875 97662112378999999887766532211 0
Q ss_pred ccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCC
Q 037063 392 ETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFD 471 (588)
Q Consensus 392 ~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~ 471 (588)
..+..++. .++..++|+.+.+ +.+.++.+.+.+++.+.|.++. .+.+.-. ..
T Consensus 286 ---------t~~~~~~~----~aa~~a~L~~l~~---~~~~~~~~~~~~~l~~~L~~~~-------~~~~~~~-----~g 337 (401)
T PRK00854 286 ---------TFGGNPLA----CAVARAALKVLTE---EGMIENAAEMGAYFLEGLRSIR-------SNIVREV-----RG 337 (401)
T ss_pred ---------CCCcCHHH----HHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHhhc-------cCceEEE-----ec
Confidence 00111111 2445567776654 3356788888899999998862 1111101 13
Q ss_pred cccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCC
Q 037063 472 RGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTN 551 (588)
Q Consensus 472 rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t 551 (588)
.|.++.+.+.+.. .....+.+.|.++||.++.. +...||+++++.++
T Consensus 338 ~g~~~~i~~~~~~---~~~~~~~~~L~~~GV~v~~~------------------------------~~~~lR~~p~~~~t 384 (401)
T PRK00854 338 RGLMLAVELEPEA---GGARQYCEALKERGLLAKDT------------------------------HDHTIRLAPPLVIT 384 (401)
T ss_pred cceEEEEEEecCc---hhHHHHHHHHHHCCeEEecC------------------------------CCCEEEEeCCcccC
Confidence 4677777664321 23456777777789987531 11289999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 037063 552 FEDTYRLWAFVSRFLD 567 (588)
Q Consensus 552 ~eDv~~li~~l~~~l~ 567 (588)
.+||+++++.|++++.
T Consensus 385 ~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 385 REQVDWALEQIAKVLA 400 (401)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998763
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-16 Score=173.72 Aligned_cols=307 Identities=14% Similarity=0.095 Sum_probs=193.5
Q ss_pred HHHHHHHHHhC--------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHH-hcCCEEEE
Q 037063 183 KIRKRIMDFMN--------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSK-KRGARVSS 253 (588)
Q Consensus 183 ~~r~~ia~~lg--------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~-~~G~~v~~ 253 (588)
++|+.|+++++ +++++ |++|+|+++++.+++.++ .++||.|++...++..+. ..+. ..|++++.
T Consensus 90 ~LR~aiA~~l~~~~~~~~~v~~~~--Iiit~Ga~~al~~l~~~l-~~pGd~Vlv~~P~Y~~~~----~~~~~~~g~~~v~ 162 (468)
T PLN02450 90 AFKNALAEFMSEIRGNKVTFDPNK--LVLTAGATSANETLMFCL-AEPGDAFLLPTPYYPGFD----RDLKWRTGVEIVP 162 (468)
T ss_pred HHHHHHHHHHHHhhCCCCCcChHH--eEEccChHHHHHHHHHHh-CCCCCEEEECCCCCCchH----HHHhhcCCcEEEE
Confidence 57777777774 45554 999999999999999999 899999887666554222 2223 47999999
Q ss_pred EeccC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcC----C
Q 037063 254 AEFAW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALG----S 324 (588)
Q Consensus 254 v~~~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~----~ 324 (588)
++.+. .+..++.+++++++.+. .+...+++++++++++||||..+|.+.+ +.|+++|++||+|.+-.. +
T Consensus 163 v~~~~~~~~~~~~~~le~~~~~~--~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~ 240 (468)
T PLN02450 163 IHCSSSNGFQITESALEEAYQQA--QKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDS 240 (468)
T ss_pred EecCCccCCcCCHHHHHHHHHHH--HhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCC
Confidence 99853 34567889999888621 1122478999999999999999998874 678899999999998331 1
Q ss_pred CCCCC-CC---------CCCCCCcEEEeccCccCCCCCCceEEEEEeCcc-hhcccCCCCCCCceEeeecCCCccccccc
Q 037063 325 KDMDT-LG---------LSLFKPDFLICSFYKIFGENPSGFGCLFVKKSS-ASVLSGSTSSVSTIMGIEPSFSEIIELET 393 (588)
Q Consensus 325 ~d~~~-l~---------l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~-~~~l~~~~~g~~g~v~~~~~~~~~~~~~~ 393 (588)
....+ +. .....--+++.|+.|.||.+..++|+++..++. ++.+...... +
T Consensus 241 ~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~~--~---------------- 302 (468)
T PLN02450 241 PGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSF--G---------------- 302 (468)
T ss_pred CCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHhhc--C----------------
Confidence 01101 11 011122368889999888656789999997653 3322211100 0
Q ss_pred ccccccccCCCCCccchhhHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCC
Q 037063 394 LDESSQSKFPESSISGVSSKLVECKGLDH---ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMF 470 (588)
Q Consensus 394 ~~~~~f~e~GT~~~~~~~~~~al~~aL~~---l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~ 470 (588)
..+.+.+ .++...|+. .+.. ++...+++++..+.+.+.|.++ ++.++.|
T Consensus 303 ---------~~s~~~Q----~a~~~~L~~~~~~~~~-l~~~~~~l~~rr~~l~~~L~~~----------gi~~~~~---- 354 (468)
T PLN02450 303 ---------LVSSQTQ----YLLSALLSDKKFTKNY-LEENQKRLKQRQKKLVSGLEAA----------GIKCLKS---- 354 (468)
T ss_pred ---------CCCHHHH----HHHHHHhCCchhHHHH-HHHHHHHHHHHHHHHHHHHHHc----------CCcccCC----
Confidence 0111111 222333321 1111 3445566666777777888764 2333322
Q ss_pred Cccc-EEEEEeecC-CCCCcC--HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec
Q 037063 471 DRGP-SLAFNVFDW-NGTRID--PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL 546 (588)
Q Consensus 471 ~rg~-iv~f~~~~~-~g~~i~--~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl 546 (588)
.++ .+-+.+... +...+. .+.+.+++++.||.+.+|..+.. .+.+++|+++
T Consensus 355 -~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~------------------------~~~g~~Rl~f 409 (468)
T PLN02450 355 -NAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHC------------------------TEPGWFRVCF 409 (468)
T ss_pred -CceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCC------------------------CCCCEEEEEe
Confidence 344 333444321 111111 12355667889999999865421 1123999998
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhh
Q 037063 547 GCLTNFEDTYRLWAFVSRFLDADF 570 (588)
Q Consensus 547 g~~~t~eDv~~li~~l~~~l~~~~ 570 (588)
+. .+.++++..++.|++++...-
T Consensus 410 ~~-~~~~~l~~~l~ri~~~l~~~~ 432 (468)
T PLN02450 410 AN-MSEETLDLAMKRLKSFVESDS 432 (468)
T ss_pred cC-CCHHHHHHHHHHHHHHHHhcc
Confidence 86 357999999999999887765
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-16 Score=170.05 Aligned_cols=305 Identities=16% Similarity=0.093 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
++.+.+.++++.-.|+..+..+|++|+|+++|+.+++..+ ++|||.|++....+ ..+....+..|+++..||+|
T Consensus 136 ~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l-~~pGd~v~vE~PtY----~~~~~~~~~~g~~~~~vp~d- 209 (459)
T COG1167 136 ELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLL-LDPGDTVLVEDPTY----PGALQALEALGARVIPVPVD- 209 (459)
T ss_pred HHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHh-CCCCCEEEEcCCCc----HHHHHHHHHcCCcEEecCCC-
Confidence 4444444444434455444346999999999999999999 89999987654432 23466778899999999997
Q ss_pred CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC------C-CCC
Q 037063 259 PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG------S-KDM 327 (588)
Q Consensus 259 ~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~------~-~d~ 327 (588)
.+ .+++|+|++.+.+. +..-++++|..+||||..++++. | ++|+++++++|.|..-.- | ..+
T Consensus 210 ~~-G~~~e~le~~~~~~------~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l 282 (459)
T COG1167 210 ED-GIDPEALEEALAQW------KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPL 282 (459)
T ss_pred CC-CCCHHHHHHHHhhc------CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCCh
Confidence 44 48999999999731 24567888999999999999987 5 899999999999997211 1 111
Q ss_pred CCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCc
Q 037063 328 DTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407 (588)
Q Consensus 328 ~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~ 407 (588)
..++ ...--+++.||+|.+.. ..++|++++.+++++.+....... ..+++.+
T Consensus 283 ~~ld--~~~rViy~gSFSK~l~P-glRlG~vv~p~~~~~~~~~~k~~~-------------------------~~~~s~~ 334 (459)
T COG1167 283 KALD--APGRVIYLGSFSKTLAP-GLRLGYVVAPPELIEKLLRLKQAA-------------------------DLGPSSL 334 (459)
T ss_pred HhhC--CCCCEEEEeeehhhccc-ccceeeeeCCHHHHHHHHHHHHHh-------------------------cCCCChH
Confidence 2222 22345899999998873 578999999998877665432110 1112222
Q ss_pred cchhhHHHHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeec
Q 037063 408 SGVSSKLVECKGLDHADALG-----LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFD 482 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G-----~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~ 482 (588)
.+. ....++. .| +.++.+..+.-.+.+.+.|.+. .-+.+++..|. .|-.+-+.+++
T Consensus 335 ~Q~-------~la~~l~-~G~~~~hl~~lR~~y~~rr~~l~~~L~~~-------~~~~~~~~~p~----gG~flwl~l~~ 395 (459)
T COG1167 335 SQA-------ALAAFLL-SGHYDRHLRRLRREYARRRDALLEALAEY-------LPELATWTRPE----GGLFLWLELPE 395 (459)
T ss_pred HHH-------HHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCCeeeecCC----ceEEEEEEcCC
Confidence 221 1112232 22 3445555556667777777764 11256665542 23344445544
Q ss_pred CCCCCcCHHHHHHHHHhCCcEecc-ccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHH
Q 037063 483 WNGTRIDPALVQKLADRHNISLSC-GFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAF 561 (588)
Q Consensus 483 ~~g~~i~~~~v~~~l~~~gI~v~~-G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~ 561 (588)
. ++...+...+.++||.+.+ |...... ......+|++++..+ .|++++.+..
T Consensus 396 ~----~~~~~l~~~a~~~gv~i~~~g~~f~~~----------------------~~~~~~~Rl~~s~~~-~e~i~~gi~~ 448 (459)
T COG1167 396 G----IDARELLAAALEKGVVVTPLGSAFSAD----------------------GDPRNGLRLSFSSPS-EEEIEEGIKR 448 (459)
T ss_pred C----CCHHHHHHHHHHCCCEEEcCCccccCC----------------------CCCCCeEEEEcCCCC-HHHHHHHHHH
Confidence 2 6677888888889999887 6443110 012238999998765 7999999999
Q ss_pred HHHhhhhhh
Q 037063 562 VSRFLDADF 570 (588)
Q Consensus 562 l~~~l~~~~ 570 (588)
|.+.+...+
T Consensus 449 l~~~~~~~~ 457 (459)
T COG1167 449 LAALLREAA 457 (459)
T ss_pred HHHHHHHHh
Confidence 888776543
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-17 Score=172.23 Aligned_cols=297 Identities=17% Similarity=0.126 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHhC------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEE
Q 037063 181 ESKIRKRIMDFMN------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 181 ~~~~r~~ia~~lg------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
..++|+.|+++++ .+++ ..|++++|+.+++.++...+..++|+.|+++...+... .+.++..|++++.+
T Consensus 46 ~~~lr~~ia~~~~~~~~~~~~~~-~~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~----~~~~~~~g~~~~~~ 120 (363)
T PF00155_consen 46 YPELREAIADFLGRRYGVPVDPE-ANILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSY----IEAARLLGAEVIPV 120 (363)
T ss_dssp HHHHHHHHHHHHHHHHTHHTTGG-EGEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHH----HHHHHHTTSEEEEE
T ss_pred hHHHHHHHHHHhhhccCcccccc-eEEEEecccccchhhhhhcccccccccceecCCccccc----cccccccCceeeec
Confidence 4689999999998 6554 24999999999999888876456889877665554422 45667789999999
Q ss_pred eccC-CCCccCHHHHHHHHhhhccccCCC-cceEEEEeCCCCCCCccCCHHHH-HH---HHHcCcEEEEeCCCcCCCCCC
Q 037063 255 EFAW-PNLRIHSGKLMKKIVGKRKKKKKK-KRGLFVFPLQSKVTGARYSYMWM-SV---AAEKGWHVLLDATALGSKDMD 328 (588)
Q Consensus 255 ~~~~-~~~~i~~e~l~~~i~~~~~~~~~~-~t~Lv~~~~~sn~tG~~~pl~~I-~~---a~~~g~~vvvDaa~~~~~d~~ 328 (588)
+++. .++.+|+++|++.+++. ..+. ++++|+++.++||||..+|.+++ ++ |+++|+++++|.+...-..-.
T Consensus 121 ~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~ 197 (363)
T PF00155_consen 121 PLDSENDFHLDPEALEEALDEL---PSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGD 197 (363)
T ss_dssp EEEETTTTEETHHHHHHHHHTS---HTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSS
T ss_pred cccccccccccccccccccccc---cccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCC
Confidence 9752 46779999999999820 1111 57999999999999999999987 55 999999999999955421010
Q ss_pred ------CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccC
Q 037063 329 ------TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKF 402 (588)
Q Consensus 329 ------~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~ 402 (588)
...+......+++.|+.|.||.+..++|++++.+++++.+......+ .
T Consensus 198 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~~~~~~--------------------------~ 251 (363)
T PF00155_consen 198 PDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPPELIERLRRFQRSG--------------------------L 251 (363)
T ss_dssp SHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEHHHHHHHHHHHHHT--------------------------T
T ss_pred CccCcccccccccccceeeeeccccccccccccccccchhhhhhhhhhccccc--------------------------c
Confidence 11112221258889999999953345999999888877665332110 0
Q ss_pred CCCCccchhhHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEe
Q 037063 403 PESSISGVSSKLVECKGLDHADAL--GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNV 480 (588)
Q Consensus 403 GT~~~~~~~~~~al~~aL~~l~~~--G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~ 480 (588)
+ ++..+ .++...+...... -++++.++++..++++.+.|.+. ++.++.+ .++++.+..
T Consensus 252 ~-~~~~~----~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----------~~~~~~~-----~~~~~~~~~ 311 (363)
T PF00155_consen 252 S-SSPMQ----AAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI----------GITVLPP-----EAGFFLWVR 311 (363)
T ss_dssp S-SHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------TSEEEHH-----SBSSEEEEE
T ss_pred c-cchhh----HHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh----------hhheeec-----cCccEEEEE
Confidence 0 11111 1222333322210 14777888888888999999874 4556553 256666654
Q ss_pred ecCCCCCcCHHHH-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHH
Q 037063 481 FDWNGTRIDPALV-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLW 559 (588)
Q Consensus 481 ~~~~g~~i~~~~v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li 559 (588)
.+. .+...+ ++++++.||.+.+|.... . .++||+++ ...+.|++++++
T Consensus 312 ~~~----~~~~~l~~~L~~~~gi~v~pg~~~~-------------------------~-~~~iRi~~-a~~~~e~~~~~~ 360 (363)
T PF00155_consen 312 LDP----NDAEELAQELLEEYGILVRPGSYFG-------------------------V-PGYIRISL-ASHSEEDLEEAL 360 (363)
T ss_dssp ESH----HHHHHHHHHHHHHHTEEEEEGGGGT-------------------------S-TTEEEEEG-GCSCHHHHHHHH
T ss_pred ccc----chHHHHHHHHHHhCCEEEEecCCCC-------------------------C-CCEEEEEe-ccCCHHHHHHHH
Confidence 431 123344 455555699999884421 1 22899999 667999999999
Q ss_pred HHH
Q 037063 560 AFV 562 (588)
Q Consensus 560 ~~l 562 (588)
+.|
T Consensus 361 ~~l 363 (363)
T PF00155_consen 361 ERL 363 (363)
T ss_dssp HHH
T ss_pred hhC
Confidence 875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-16 Score=170.92 Aligned_cols=308 Identities=15% Similarity=0.118 Sum_probs=189.1
Q ss_pred HHHHHHHHHHhC--------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEE
Q 037063 182 SKIRKRIMDFMN--------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSS 253 (588)
Q Consensus 182 ~~~r~~ia~~lg--------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~ 253 (588)
.++|+.||++++ ++++ .|++|+|+++|+.+++.++ ..+||.|+++..++..... .+..+.|++++.
T Consensus 98 ~~LR~aiA~~l~~~~~~~~~v~p~--~Ivit~G~t~al~~l~~~l-~~pGD~Vlv~~P~Y~~f~~---~~~~~~g~~vv~ 171 (447)
T PLN02607 98 KSFRQAMASFMEQIRGGKARFDPD--RIVLTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDR---DLRWRTGVKIVP 171 (447)
T ss_pred HHHHHHHHHHHHHhcCCCCCcCHH--HeEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCCcchHH---HHHhcCCcEEEE
Confidence 367777777764 4444 5999999999999999998 7999998876665542322 222357999999
Q ss_pred EeccCCC-CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcCC----
Q 037063 254 AEFAWPN-LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALGS---- 324 (588)
Q Consensus 254 v~~~~~~-~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~~---- 324 (588)
++++..+ ..++.+++++++.+. +....+++++++++++||||..+|.+. | +.|+++|+++|+|.+-...
T Consensus 172 v~~~~~~~f~~~~~~le~a~~~a--~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~ 249 (447)
T PLN02607 172 IHCDSSNNFQVTPQALEAAYQEA--EAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSA 249 (447)
T ss_pred EeCCCCCCCcCCHHHHHHHHHHH--HHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCC
Confidence 9886332 458999999998731 122357899999999999999999665 4 7899999999999984321
Q ss_pred CCCCC-------CCCCC-CCCcEEEeccCccCCCCCCceEEEEEeC-cchhcccCCCCCCCceEeeecCCCccccccccc
Q 037063 325 KDMDT-------LGLSL-FKPDFLICSFYKIFGENPSGFGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLD 395 (588)
Q Consensus 325 ~d~~~-------l~l~~-~~~D~vv~S~~K~~G~~P~G~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~ 395 (588)
.+..+ ++... ..--.++.|+.|.||.+..++|+++..+ +++..+...... .
T Consensus 250 ~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~~--~------------------ 309 (447)
T PLN02607 250 SEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--T------------------ 309 (447)
T ss_pred CCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHhhc--C------------------
Confidence 00111 11000 0112567899999986567799999843 443433221100 0
Q ss_pred ccccccCCCCCccchhhHHHHHHHHH---HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc
Q 037063 396 ESSQSKFPESSISGVSSKLVECKGLD---HADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR 472 (588)
Q Consensus 396 ~~~f~e~GT~~~~~~~~~~al~~aL~---~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r 472 (588)
+.+++.+ .++...|+ +.++. +....++++...+.+.+.|+++ |+ .++.+ ..
T Consensus 310 -------~~s~~~q----~~~~~~L~d~~~~~~~-l~~~r~~l~~~~~~~~~~L~~~-------gi---~~~~~----~a 363 (447)
T PLN02607 310 -------LVSSQTQ----HLLASMLSDEEFTENY-IRTNRERLRKRYEMIVQGLRRA-------GI---ECLKG----NA 363 (447)
T ss_pred -------CCCHHHH----HHHHHHhCCchhHHHH-HHHHHHHHHHHHHHHHHHHHhC-------CC---CcccC----Ce
Confidence 0111111 11222222 12221 3455666666667777777764 22 22222 12
Q ss_pred ccEEEEEeecCCCC-CcCH-HH-HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC
Q 037063 473 GPSLAFNVFDWNGT-RIDP-AL-VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL 549 (588)
Q Consensus 473 g~iv~f~~~~~~g~-~i~~-~~-v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~ 549 (588)
|..+-+++...-.. .... .. ..+++++.||.|.+|..|.. ...+++|++++..
T Consensus 364 g~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~------------------------~~~g~fRi~fa~~ 419 (447)
T PLN02607 364 GLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHC------------------------SEPGWFRVCFANM 419 (447)
T ss_pred eEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCC------------------------CCCCEEEEEeccC
Confidence 33444444321000 0111 23 34677788999999865521 1123999998753
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q 037063 550 TNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 550 ~t~eDv~~li~~l~~~l~~ 568 (588)
+.++++..++.|.+++++
T Consensus 420 -~~~~l~~gl~Ri~~~l~~ 437 (447)
T PLN02607 420 -SEDTLEVALKRIHRFMDR 437 (447)
T ss_pred -CHHHHHHHHHHHHHHHHH
Confidence 578999999999888754
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.5e-16 Score=165.83 Aligned_cols=295 Identities=11% Similarity=0.034 Sum_probs=196.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhC------------C-CCCCCeEEEcCCCchhHHHHHHHHH
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY------------P-FYSNPRLLTVYDHENEAAALMIESS 244 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~------------~-~~~gd~ll~~~e~~s~~~~~~~~~a 244 (588)
..+.+++.+.||+++|.+ ..++|.+|....+-++ .++ + ...++.|+.+...|+.++.++ +++
T Consensus 146 ~~~h~~LE~~LA~f~g~e---~all~sSGy~AN~~~i-~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~-~ls 220 (476)
T PLN02955 146 TTYHRLLESSLADLKKKE---DCLVCPTGFAANMAAM-VAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGV-RLA 220 (476)
T ss_pred hHHHHHHHHHHHHHHCCC---cEEEECChHHHHHHHH-HHHhhccccccccccccCCCCcEEEEeccchHHHHHHH-Hhc
Confidence 567789999999999984 3466666665544433 332 0 123445777777776566664 444
Q ss_pred Hhc-CCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCc
Q 037063 245 KKR-GARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATAL 322 (588)
Q Consensus 245 ~~~-G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~ 322 (588)
+.+ ++++..++.+ |+++|+++|+. .. .+.++|++..+.++.|.+.|+++| ++++++|+.++||.++.
T Consensus 221 ~~~~~a~~~~f~HN------D~~~Le~~L~~----~~-~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~ 289 (476)
T PLN02955 221 ERQGNVEVFVYRHC------DMYHLNSLLSS----CK-MKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHG 289 (476)
T ss_pred cccCCceEEEeCCC------CHHHHHHHHHh----CC-CCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEccccc
Confidence 444 5777777654 78999999972 11 345799999999999999999999 99999999999999987
Q ss_pred CCCC-------CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccc
Q 037063 323 GSKD-------MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLD 395 (588)
Q Consensus 323 ~~~d-------~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~ 395 (588)
.+.- ...+++. ..+|++++++.|.||. . .|++..+++.++.++..... .
T Consensus 290 ~Gv~G~~G~G~~e~~g~~-~di~ii~~TLsKA~G~--~-GGfi~gs~~~~~~l~~~~~~---~----------------- 345 (476)
T PLN02955 290 TFVCGENGGGVAEEFNCE-ADVDLCVGTLSKAAGC--H-GGFIACSKKWKQLIQSRGRS---F----------------- 345 (476)
T ss_pred CceecCCCCcHHHHhCCC-CCCcEEEEeCccchhc--c-CceeecHHHHHHHHHHhCCC---C-----------------
Confidence 6420 1223332 3489999999999983 2 47888888777766532211 0
Q ss_pred ccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE
Q 037063 396 ESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS 475 (588)
Q Consensus 396 ~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i 475 (588)
.| +|...+.. .++..++++.+.+. +...+++..+.+++++. + |.+ ..++|
T Consensus 346 --if---Stalpp~~--aaa~laal~l~~~~--~~~r~~L~~n~~~fr~~---~-------G~~-----------~~sPI 395 (476)
T PLN02955 346 --IF---STAIPVPM--AAAAYAAVVVARKE--KWRRKAIWERVKEFKAL---S-------GVD-----------ISSPI 395 (476)
T ss_pred --ee---cccccHHH--HHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHh---c-------CCC-----------CCCCE
Confidence 12 11111111 24555777777542 34566677777777662 1 222 12688
Q ss_pred EEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHH
Q 037063 476 LAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDT 555 (588)
Q Consensus 476 v~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv 555 (588)
+.+.+.+.. ....+.+.|.++||.+..... |. . ..|...+|+++...+|.|||
T Consensus 396 ~pI~ig~~~----~a~~~~~~L~~~Gi~v~~i~y--Pt-------------V--------P~g~~rLRi~lsA~Ht~edI 448 (476)
T PLN02955 396 ISLVVGNQE----KALKASRYLLKSGFHVMAIRP--PT-------------V--------PPNSCRLRVTLSAAHTTEDV 448 (476)
T ss_pred EEEEeCCHH----HHHHHHHHHHHCCCEEEEECC--CC-------------C--------CCCCceEEEeeCCCCCHHHH
Confidence 888876531 234467788888999865321 10 0 13344899999999999999
Q ss_pred HHHHHHHHHhhhhh
Q 037063 556 YRLWAFVSRFLDAD 569 (588)
Q Consensus 556 ~~li~~l~~~l~~~ 569 (588)
+++++.|.+..|..
T Consensus 449 d~lv~~L~~~~~~~ 462 (476)
T PLN02955 449 KKLITALSSCLDFD 462 (476)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999886653
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.2e-17 Score=168.38 Aligned_cols=289 Identities=12% Similarity=0.069 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhc-CCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKR-GARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~-G~~v~~v~~~ 257 (588)
....++++.|++++|+++ ++++.|+++++.+++.++ +.+||+|++....|...+.. ..+... +++++.++++
T Consensus 34 ~~~~~L~~~la~~~g~~~----~~v~~~g~~a~~~~l~~~-~~~gd~vi~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 106 (333)
T PRK10534 34 PTVNALQDYAAELSGKEA----ALFLPTGTQANLVALLSH-CERGEEYIVGQAAHNYLYEA--GGAAVLGSIQPQPIDAA 106 (333)
T ss_pred HHHHHHHHHHHHHhCCCe----EEEeCchHHHHHHHHHHh-cCCCCeeEEechhhhhHhcC--CchHHhcCceEEeecCC
Confidence 456799999999999852 568888888877777777 78999977654433212211 101222 4677888776
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcCC-C---CCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALGS-K---DMDT 329 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~~-~---d~~~ 329 (588)
.++.+|+++|+++++.. .....++++|+++++ +||..+|.++| ++|+++|++|++|++.... . ....
T Consensus 107 -~~~~~d~~~l~~~i~~~--~~~~~~~~lv~l~np--~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~ 181 (333)
T PRK10534 107 -ADGTLPLDKVAAKIKPD--DIHFARTRLLSLENT--HNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCEL 181 (333)
T ss_pred -CCCCCCHHHHHHhhccc--CcCcccceEEEEecC--CCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCH
Confidence 67789999999988610 000116889999854 46999999886 4688899999999974321 0 0010
Q ss_pred CCCCCCCCcEEEeccCccCCCCCCceE-EEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 330 LGLSLFKPDFLICSFYKIFGENPSGFG-CLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 330 l~l~~~~~D~vv~S~~K~~G~~P~G~G-~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
..+. ...|.++.|++|.+|. + +| +++..+++++.+......+ .+..+..
T Consensus 182 ~~~~-~~~~~~~~s~SK~~~~-~--~G~~~~~~~~~i~~~~~~~~~~--------------------------~~~~~~~ 231 (333)
T PRK10534 182 KEIT-QYCDSFTICLSKGLGT-P--VGSLLVGNRDYIKRARRWRKMT--------------------------GGGMRQA 231 (333)
T ss_pred HHHH-hcCCEEEEEeEcCCCC-c--ccceEEcCHHHHHHHHHHHHHh--------------------------CCchhhH
Confidence 0111 1247677799999885 4 56 5767788777664322100 0000111
Q ss_pred chhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 409 GVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
+. +...++..++.. .+.+ ++....++++.+.|.++ +++++.| .++++.+.+.+ .
T Consensus 232 ~~----~~a~~~~~l~~~-~~~~-~~~~~~r~~l~~~L~~~----------g~~~~~~-----~~nfv~~~~~~-----~ 285 (333)
T PRK10534 232 GI----LAAAGLYALKHN-VARL-QEDHDNAAWLAEQLREA----------GADVMRQ-----DTNMLFVRVGE-----E 285 (333)
T ss_pred HH----HHHHHHHHHHhh-HHHH-HHHHHHHHHHHHHHHhC----------CCccCCC-----CceEEEEECCc-----h
Confidence 11 111233323221 1222 23444678899999885 3444432 35666666542 1
Q ss_pred CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 489 DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 489 ~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
+...+.++|.++||.++.| . .+|++.++-.|.|+++++++.|++|+.
T Consensus 286 ~~~~~~~~l~~~gi~v~~~-----------------------------~---~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 286 QAAALGEYMRERNVLINAS-----------------------------P---IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred hHHHHHHHHHHcCeeecCC-----------------------------c---eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 3567788999999998754 1 467777666689999999999998764
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.7e-16 Score=165.35 Aligned_cols=338 Identities=10% Similarity=0.067 Sum_probs=194.1
Q ss_pred CCeeeecCCCCCCC----CHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHH
Q 037063 110 NNYVCFDYIGHGLF----SYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIR 185 (588)
Q Consensus 110 ~~~vyLD~a~~gl~----~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r 185 (588)
++..|||.++.+.+ .+.+++++.+.+.. +++.++. .+.. ....+..++++
T Consensus 44 ~g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~--~g~~~~~---------------------~~~~---~~~~~~~~~l~ 97 (402)
T PRK07505 44 DGHTFVNFVSCSYLGLDTHPAIIEGAVDALKR--TGSLHLS---------------------SSRT---RVRSQILKDLE 97 (402)
T ss_pred CCceEEEeecCCccCCCCCHHHHHHHHHHHHH--hCCCCCC---------------------ccch---hhhhHHHHHHH
Confidence 67889999887766 67788888766642 2211110 0000 01256788999
Q ss_pred HHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC---CCCCCe-E-EEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 186 KRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP---FYSNPR-L-LTVYDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 186 ~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~---~~~gd~-l-l~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
++|+++++. + .+++++| ++|...++.... +.+|+. + +....+|. ++....... +.+.+++.+|..
T Consensus 98 ~~la~~~~~--~--~~~~~sG-~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~-s~~~~~~~~-~~~~~v~~~~~~--- 167 (402)
T PRK07505 98 EALSELFGA--S--VLTFTSC-SAAHLGILPLLASGHLTGGVPPHMVFDKNAHA-SLNILKGIC-ADETEVETIDHN--- 167 (402)
T ss_pred HHHHHHhCC--C--EEEECCh-HHHHHHHHHHHHhcccCCCCCCEEEEchhhhH-hHHhhhhhh-hcCCeEEEeCCC---
Confidence 999999987 2 2556655 555554443210 233443 4 44444444 322212222 246777777653
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcC---C-C----CCCCCC
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALG---S-K----DMDTLG 331 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~---~-~----d~~~l~ 331 (588)
|.++++++++ ++++++++..+.|++|.+.|+++| ++|+++|+++|+|+++.. + . ....++
T Consensus 168 ---d~~~l~~~~~--------~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~ 236 (402)
T PRK07505 168 ---DLDALEDICK--------TNKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELD 236 (402)
T ss_pred ---CHHHHHHHHh--------cCCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcC
Confidence 7889999887 567888899999999999999999 999999999999999743 1 0 011222
Q ss_pred CCCCCCcEEEeccCccCCCCCCceEEEEE-eCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 332 LSLFKPDFLICSFYKIFGENPSGFGCLFV-KKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 332 l~~~~~D~vv~S~~K~~G~~P~G~G~L~v-~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
.......+++.|+.|.+|. .| |++++ +++.++.+.....+ . . -.|+++..+.
T Consensus 237 ~~~~d~~i~~~s~sK~~~~--~G-g~~~~~~~~~~~~~~~~~~~--~--------------------t--~~~~~~~~a~ 289 (402)
T PRK07505 237 YRLNERTIIAASLGKAFGA--SG-GVIMLGDAEQIELILRYAGP--L--------------------A--FSQSLNVAAL 289 (402)
T ss_pred CCCCCCeEEEEechhhhhc--cC-eEEEeCCHHHHHHHHHhCCC--c--------------------e--eCCCCCHHHH
Confidence 2111234677799998883 34 77665 44555555432111 0 0 1223333332
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCH
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDP 490 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~ 490 (588)
++..++++.+.+..+.+..+++++..+.+...+.. + .. .....+..+.+.+. ...
T Consensus 290 ---aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------~------~~--g~~~~i~~~~~~~~----~~~ 344 (402)
T PRK07505 290 ---GAILASAEIHLSEELDQLQQKLQNNIALFDSLIPT----------E------QS--GSFLPIRLIYIGDE----DTA 344 (402)
T ss_pred ---HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHh----------c------CC--CCCCCEEEEEeCCH----HHH
Confidence 44556666544333333333333333322221111 0 00 01122333333220 124
Q ss_pred HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 491 ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 491 ~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
..+.+.|.++||.++.... +.. ..+..+||++++...|.||++++++.|++++++.
T Consensus 345 ~~~~~~l~~~Gi~v~~~~~--p~~---------------------~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~~ 400 (402)
T PRK07505 345 IKAAKQLLDRGFYTSPVFF--PVV---------------------AKGRAGLRIMFRASHTNDEIKRLCSLLKEILDEG 400 (402)
T ss_pred HHHHHHHHHCCCeEeeecC--CCC---------------------CCCCceEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 5566767788999986411 000 0122389999999999999999999999987653
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-16 Score=168.67 Aligned_cols=316 Identities=13% Similarity=0.042 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCC-
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWP- 259 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~- 259 (588)
+.++|+.|+++++.+ . |++|.|+|+|+.+++.++ +++|| |+....|+.+.... .+..|++++.++++..
T Consensus 80 ~~~Lreaia~~~~~~--~--vv~t~ggt~A~~~~~~al-l~pGD-Vii~~p~~~~~~~~----i~~~G~~~v~v~~~~~~ 149 (460)
T PRK13238 80 YYRLEDAVKDIFGYP--Y--TIPTHQGRAAEQILFPVL-IKKGD-VVPSNYHFDTTRAH----IELNGATAVDLVIDEAL 149 (460)
T ss_pred HHHHHHHHHHHhCCC--c--EEECCCHHHHHHHHHHHh-CCCCC-EEccCCcccchHHH----HHHcCCEEEEEeccccc
Confidence 458999999999973 2 999999999999999999 99999 77666665533332 3457999999998521
Q ss_pred --------CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCC-ccCCHH---HH-HHHHHcCcEEEEeCCCcCC--
Q 037063 260 --------NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTG-ARYSYM---WM-SVAAEKGWHVLLDATALGS-- 324 (588)
Q Consensus 260 --------~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG-~~~pl~---~I-~~a~~~g~~vvvDaa~~~~-- 324 (588)
.+.+|.++|++.|+. ...+++++|++++++|++| ..++.+ +| ++|+++|++||+|+++...
T Consensus 150 ~~~~~~~f~g~id~e~Le~~i~~----~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a 225 (460)
T PRK13238 150 DTGSRHPFKGNFDLEKLEALIEE----VGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENA 225 (460)
T ss_pred cccccccccCCcCHHHHHHHHhh----cCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhh
Confidence 245999999999972 1124799999999999998 888765 57 8899999999999987541
Q ss_pred --CC-----CCCCCCC------CCCCcEEEeccCccCCCCCCceEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccc
Q 037063 325 --KD-----MDTLGLS------LFKPDFLICSFYKIFGENPSGFGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIE 390 (588)
Q Consensus 325 --~d-----~~~l~l~------~~~~D~vv~S~~K~~G~~P~G~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~ 390 (588)
.. .....+. ..-.|++++|++|.+.. |.| |+++.++ +++++++......-|.+
T Consensus 226 ~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~-~~G-G~i~~~d~~l~~~~~~~~~~~~g~~----------- 292 (460)
T PRK13238 226 YFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMV-NIG-GLLCFRDEDLFTECRTLCILYEGFP----------- 292 (460)
T ss_pred hhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCC-cce-eEEEcChHHHHHHhhhcccccCCcc-----------
Confidence 00 0111110 01279999999995442 776 8888884 66666654431100100
Q ss_pred cccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCC
Q 037063 391 LETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMF 470 (588)
Q Consensus 391 ~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~ 470 (588)
..|..+... .+|+..+|+.... .+.+..+.+ -+++|.+.|.+. | +.+..|
T Consensus 293 ----------t~~g~~~~~---~~Ala~~l~e~~~--~~~~~~~~~-~~~~l~~~L~~~-------G---~~~~~p---- 342 (460)
T PRK13238 293 ----------TYGGLAGRD---MEALAVGLYEGMD--EDYLAYRIG-QVEYLGEGLEEA-------G---VPIQTP---- 342 (460)
T ss_pred ----------cccCcHHHH---HHHHHhhHHHhhC--hHHHHHHHH-HHHHHHHHHHHC-------C---CCeEcc----
Confidence 111111111 1455555543212 123333333 357888888874 3 445554
Q ss_pred CcccEEEEEeecC----CCCCc-CHHHHHHHHHhCCcEecccc-ccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEE
Q 037063 471 DRGPSLAFNVFDW----NGTRI-DPALVQKLADRHNISLSCGF-LQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTA 544 (588)
Q Consensus 471 ~rg~iv~f~~~~~----~g~~i-~~~~v~~~l~~~gI~v~~G~-~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRv 544 (588)
..|..+-.++... .++.. +.....+++.+.||.+-.+. ++.+.-... . .........||+
T Consensus 343 ~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~---------~-----~~~~~~~~~~Rl 408 (460)
T PRK13238 343 AGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKT---------G-----EQLPAPAELLRL 408 (460)
T ss_pred CCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCC---------c-----cccCCccceEEE
Confidence 2233333344321 11112 34456788899999876542 332110000 0 000011348999
Q ss_pred ecCC-CCCHHHHHHHHHHHHHhhh
Q 037063 545 ALGC-LTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 545 Slg~-~~t~eDv~~li~~l~~~l~ 567 (588)
++.- .-|.++++.+++.|+++.+
T Consensus 409 a~~rr~~~~~~~~~~~~~l~~~~~ 432 (460)
T PRK13238 409 AIPRRVYTQSHMDYVAEALKAVKE 432 (460)
T ss_pred ecccccCCHHHHHHHHHHHHHHHH
Confidence 9862 2288999999999998763
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-15 Score=154.26 Aligned_cols=333 Identities=15% Similarity=0.124 Sum_probs=227.5
Q ss_pred CCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHhCCCCCCceE
Q 037063 122 LFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMNISEDDYTL 201 (588)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lga~~~e~~v 201 (588)
+.|+.+++++.+.+....+|-| ....++.+.+.....+-.+....+..|
T Consensus 38 ~~pp~i~~Al~~rvdhGvfGY~-------------------------------~~~~~~~~ai~~w~~~r~~~~i~~e~i 86 (388)
T COG1168 38 PTPPEIIEALRERVDHGVFGYP-------------------------------YGSDELYAAIAHWFKQRHQWEIKPEWI 86 (388)
T ss_pred CCCHHHHHHHHHHHhcCCCCCC-------------------------------CCCHHHHHHHHHHHHHhcCCCCCcceE
Confidence 3467888888777755555443 112568889999999988876666679
Q ss_pred EEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCc--cCHHHHHHHHhhhcccc
Q 037063 202 VFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLR--IHSGKLMKKIVGKRKKK 279 (588)
Q Consensus 202 vft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~--i~~e~l~~~i~~~~~~~ 279 (588)
+|+++.--++.++++.| -++||.|++..+.+. + +.+..+..|-++...|+..++++ ||.++|++.+..
T Consensus 87 ~~~p~VVpgi~~~I~~~-T~~gd~Vvi~tPvY~---P-F~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~----- 156 (388)
T COG1168 87 VFVPGVVPGISLAIRAL-TKPGDGVVIQTPVYP---P-FYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVD----- 156 (388)
T ss_pred EEcCcchHhHHHHHHHh-CcCCCeeEecCCCch---H-HHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhc-----
Confidence 99999999999999999 899999775544321 2 24455778999999998755554 699999999983
Q ss_pred CCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC----C-CCCCCCCCCCCC--CcEEEeccCccC
Q 037063 280 KKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG----S-KDMDTLGLSLFK--PDFLICSFYKIF 348 (588)
Q Consensus 280 ~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~----~-~d~~~l~l~~~~--~D~vv~S~~K~~ 348 (588)
.+++++++++++||+|.+..-++ | ++|++||+.||.|..+.= + .......++..- .-+.+.|..|-|
T Consensus 157 --~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtF 234 (388)
T COG1168 157 --ERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTF 234 (388)
T ss_pred --CCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccc
Confidence 56899999999999999999777 4 889999999999998432 2 111111233221 335667889988
Q ss_pred CCCCCceEEEEEeCcch-hc-ccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHh
Q 037063 349 GENPSGFGCLFVKKSSA-SV-LSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL 426 (588)
Q Consensus 349 G~~P~G~G~L~v~~~~~-~~-l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~ 426 (588)
+.+...++.+++.++.. .+ ++..... -.+.+|..++ .|..+|.+.=..+
T Consensus 235 NlaGL~~a~~Ii~n~~lr~~~~~~l~~~--------------------------~~~~~n~lg~---~A~~aAY~~G~~W 285 (388)
T COG1168 235 NLAGLKCAYIIISNRELRAKFLKRLKRN--------------------------GLHGPSALGI---IATEAAYNQGEPW 285 (388)
T ss_pred cchhhhheeEEecCHHHHHHHHHHHHHh--------------------------cCCCCchHHH---HHHHHHHHhchHH
Confidence 86555577778777653 11 1111100 1223455554 3444555443333
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHH-HHHHHhCCcEec
Q 037063 427 GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALV-QKLADRHNISLS 505 (588)
Q Consensus 427 G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v-~~~l~~~gI~v~ 505 (588)
++++.++++...+++.+.|.+. .|++++..|. |.-+.+. |.....++.+.+ ..++++.+|.+.
T Consensus 286 -Ld~L~~yl~~N~~~~~~~l~~~--------~P~v~v~~p~-----gTYL~WL--D~r~l~l~d~~l~~~ll~~akVal~ 349 (388)
T COG1168 286 -LDELLEYLKDNRDYVADFLNKH--------LPGVKVTEPQ-----GTYLAWL--DCRELGLDDSELAEFLLEEAKVALS 349 (388)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhh--------CCCcEEecCC-----Cceeeee--eccccCCChHHHHHHHHHhhcEecc
Confidence 7888999999999999999985 7999998764 3333332 111222554454 557788999998
Q ss_pred cccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 506 CGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 506 ~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.|.-- . ..|.+.+|+-++ .+.+-++..++.|++.++.
T Consensus 350 ~G~~F----------------G--------~~g~gf~RlN~a--cpr~~L~eal~ri~~al~~ 386 (388)
T COG1168 350 PGSTF----------------G--------EEGSGFVRLNFA--CPRAILEEALERLKRALKK 386 (388)
T ss_pred CCCcc----------------C--------cCCCceEEEecC--CCHHHHHHHHHHHHHHHhc
Confidence 88321 1 144559999865 4777788888777766654
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-15 Score=163.71 Aligned_cols=326 Identities=10% Similarity=0.121 Sum_probs=204.6
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+. |--.+.+++++.+.+......+ ... ..+...
T Consensus 37 ~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~----------------------~~~---------~~~~~~ 85 (396)
T PRK04073 37 PEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTS----------------------RAF---------HSDQLG 85 (396)
T ss_pred CCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccccc----------------------ccc---------CCHHHH
Confidence 368889998533 4466788888766653211100 000 123445
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--------CCCC-CeEE-EcCCCchhHHHHHHHHHHhcC----
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--------FYSN-PRLL-TVYDHENEAAALMIESSKKRG---- 248 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--------~~~g-d~ll-~~~e~~s~~~~~~~~~a~~~G---- 248 (588)
++.++++++.+. + .++|++++|+|+..++.... .++| ++|+ +...||...... ..+....+
T Consensus 86 ~l~~~l~~~~~~--~--~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~-~~~~~~~~~~~~ 160 (396)
T PRK04073 86 PWYEKVAKLTGK--D--MVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAA-VSLSSEEEYKRG 160 (396)
T ss_pred HHHHHHHhcCCC--C--eEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHH-HhhcCCcccccC
Confidence 778888888764 2 49999999999887766431 1144 4455 556677633322 22211100
Q ss_pred -----CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEe
Q 037063 249 -----ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLD 318 (588)
Q Consensus 249 -----~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvD 318 (588)
..+..++.. |.+++++.++ +++++|++..++|++|.+.| +++| ++|+++|+++|+|
T Consensus 161 ~~~~~~~~~~~~~~------d~~~l~~~i~--------~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~D 226 (396)
T PRK04073 161 FGPMLPGIKKIPYG------DLEALKAAIT--------PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIAD 226 (396)
T ss_pred CCCCCCCceEeCCC------CHHHHHHhcc--------cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 012233321 6788888887 67899999999999999998 7788 9999999999999
Q ss_pred CCCc-CCCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccc
Q 037063 319 ATAL-GSKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLD 395 (588)
Q Consensus 319 aa~~-~~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~ 395 (588)
.++. ++.. ....+.....+|+++ +.|.+|.+...+|++++++++++.+.....+ .
T Consensus 227 Ev~~g~g~~g~~~~~~~~~~~pdi~~--~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~--~------------------ 284 (396)
T PRK04073 227 EIQTGLGRTGKLFACDWDNVTPDMYI--LGKALGGGVFPISCVAANRDILGVFTPGSHG--S------------------ 284 (396)
T ss_pred cchhCCCcCcHHHHhhhcCCCCCEEE--ecccccCCCCcceEEEEcHHHHhhhcCCCCC--C------------------
Confidence 9966 3211 111122233488776 4698874224489999999887766432211 0
Q ss_pred ccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE
Q 037063 396 ESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS 475 (588)
Q Consensus 396 ~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i 475 (588)
..+..+ .. .++..++|+.+.+ +.+.++.+.+.+++.+.|.++.+ +.+..+ ..+|.+
T Consensus 285 -----t~~~~~-~~---~aaa~aaL~~~~~---~~l~~~~~~~~~~l~~~L~~l~~-------~~i~~~-----~~~g~~ 340 (396)
T PRK04073 285 -----TFGGNP-LA---CAVSIAALEVLEE---EKLPERSLELGEYFKEQLKEIDN-------PMIKEV-----RGRGLF 340 (396)
T ss_pred -----CCCCCH-HH---HHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHhhcC-------Ccccce-----ecceEE
Confidence 001111 11 1344467776654 34667888889999999988622 222111 134666
Q ss_pred EEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHH
Q 037063 476 LAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDT 555 (588)
Q Consensus 476 v~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv 555 (588)
+.+.+.. +...+.+.|.++||.+... +..+||+++++..|.|||
T Consensus 341 ~~~~~~~------~~~~~~~~l~~~Gv~~~~~------------------------------~~~~iRi~p~l~~t~e~i 384 (396)
T PRK04073 341 IGVELNE------PARPYCEALKEEGLLCKET------------------------------HETVIRFAPPLVITKEEL 384 (396)
T ss_pred EEEEecc------hHHHHHHHHHHCCeEEecC------------------------------CCCEEEEECCcccCHHHH
Confidence 6666542 2455666677789987531 112899999999999999
Q ss_pred HHHHHHHHHhh
Q 037063 556 YRLWAFVSRFL 566 (588)
Q Consensus 556 ~~li~~l~~~l 566 (588)
+++++.|++++
T Consensus 385 ~~~~~~l~~~l 395 (396)
T PRK04073 385 DWAFEKIKAVL 395 (396)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-15 Score=151.83 Aligned_cols=166 Identities=11% Similarity=0.066 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+.+.++|+.+=|-- .-+.++++..|+.+++..+ .++||+|++. .-|.. .+..+....++.|++|++++.
T Consensus 61 NPT~~vlE~RiAaLEGG~----aa~a~aSG~AA~~~ai~~l-a~aGD~iVss~~LYGG-T~~lf~~tl~~~Gi~v~fvd~ 134 (426)
T COG2873 61 NPTTDVLEERIAALEGGV----AALAVASGQAAITYAILNL-AGAGDNIVSSSKLYGG-TYNLFSHTLKRLGIEVRFVDP 134 (426)
T ss_pred CchHHHHHHHHHHhhcch----hhhhhccchHHHHHHHHHh-ccCCCeeEeeccccCc-hHHHHHHHHHhcCcEEEEeCC
Confidence 344567889999987652 2677889999999999999 8999998754 44443 666667777999999999986
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ +++.++++|+ ++||+|.+....||-+.+.|++.| ++||++|++++||.+-..|.-+.+++ +
T Consensus 135 ~------d~~~~~~aI~--------~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~rP~~---h 197 (426)
T COG2873 135 D------DPENFEAAID--------ENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIE---H 197 (426)
T ss_pred C------CHHHHHHHhC--------cccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcceecchhh---c
Confidence 5 6899999999 899999999999999999999999 99999999999999977764345554 4
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEeCcchh
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVKKSSAS 366 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~ 366 (588)
++|+++-|..|+.|.....+|.++|.....+
T Consensus 198 GADIVvHS~TK~igGhGt~iGG~iVD~G~FD 228 (426)
T COG2873 198 GADIVVHSATKYIGGHGTAIGGVIVDGGKFD 228 (426)
T ss_pred CCCEEEEeecccccCCccccceEEEeCCccc
Confidence 4999999999988755666888888766544
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-15 Score=159.55 Aligned_cols=272 Identities=14% Similarity=0.107 Sum_probs=177.6
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNL 261 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~ 261 (588)
.++|+.|+++++. ++ |++|+|+++|+.+++. +.+||+|++....+. .....++..|++++.++.+
T Consensus 52 ~~Lr~~ia~~~~~--~~--I~it~Gs~~al~~~~~---~~~gd~v~v~~P~y~----~~~~~~~~~g~~~~~v~~~---- 116 (330)
T PRK05664 52 DGLEAAARAYYGA--PQ--LLPVAGSQAAIQALPR---LRAPGRVGVLSPCYA----EHAHAWRRAGHQVRELDEA---- 116 (330)
T ss_pred HHHHHHHHHHhCC--CC--EEECcCHHHHHHHHHH---ccCCCEEEEcCCChH----HHHHHHHHcCCeEEEechh----
Confidence 5789999999996 33 9999999999999864 468999776655433 2245677889999988753
Q ss_pred ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcCCCCCCC-CCCCCCC
Q 037063 262 RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALGSKDMDT-LGLSLFK 336 (588)
Q Consensus 262 ~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~~~d~~~-l~l~~~~ 336 (588)
++++.++ ++++++++.++||||..++.+++ +.|+++|++||+|.+-.-.....+ ..+....
T Consensus 117 -----~~~~~~~---------~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~ 182 (330)
T PRK05664 117 -----EVEAALD---------SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRP 182 (330)
T ss_pred -----hHhhhhc---------CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCC
Confidence 4555543 56788999999999999998876 456789999999998422110011 1222211
Q ss_pred CcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHH
Q 037063 337 PDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVE 416 (588)
Q Consensus 337 ~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al 416 (588)
--+++.||+|.+|.+..++|+++..+++++.+...... +. ...+.. .+.
T Consensus 183 ~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~~~~~~~--~~-------------------------~~~~~~----~~~ 231 (330)
T PRK05664 183 GLIVLRSFGKFFGLAGARLGFVLAEPALLRALAELLGP--WT-------------------------VSGPTR----WLA 231 (330)
T ss_pred CEEEEeeccccccCCCcceEEEEeCHHHHHHHHHhcCC--CC-------------------------CCHHHH----HHH
Confidence 23788899999986456799999988887766533211 00 000111 223
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHH
Q 037063 417 CKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKL 496 (588)
Q Consensus 417 ~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~ 496 (588)
..+|+.... .+...+++...++++.+.|+++ | ++ +.. .....+-+.+. +...+.+.
T Consensus 232 ~~~L~~~~~--~~~~~~~~~~~r~~l~~~L~~~-------~---~~---~~~--~~~~f~~~~~~-------~~~~~~~~ 287 (330)
T PRK05664 232 QAALADTPW--QRRQRERLLAASQRLAALLRRH-------G---LT---PAG--GCALFQWVRTE-------DAAALHEF 287 (330)
T ss_pred HHHHhChHH--HHHHHHHHHHHHHHHHHHHHHC-------C---Cc---ccC--CcceEEEEecC-------CHHHHHHH
Confidence 344432211 3455666777778888888874 2 21 110 01112222221 35677788
Q ss_pred HHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 497 ADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 497 l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
|.++||.|+. +.. . ++||+|++. +.+|+++|.+.|+++.++
T Consensus 288 l~~~gi~v~~--f~~-------------------------~--~~iRis~~~--~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 288 LARRGILTRL--FEQ-------------------------P--ASLRFGLPA--DEADWARLDQALLAYRKE 328 (330)
T ss_pred HHHCCeEEEE--CCC-------------------------C--CeEEEECCC--CHHHHHHHHHHHHHHHhh
Confidence 8889999963 110 1 289999885 678999999999987553
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-15 Score=169.02 Aligned_cols=324 Identities=14% Similarity=0.051 Sum_probs=196.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHH---HHHHhCCCCC----CCeEE-EcCCCchhHHHHHHHHHHhcCC
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFK---LLAESYPFYS----NPRLL-TVYDHENEAAALMIESSKKRGA 249 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~---lv~~s~~~~~----gd~ll-~~~e~~s~~~~~~~~~a~~~G~ 249 (588)
.+++.+..+.++++.|.+. .-++.++++.|-- ++++.+.-.. .++++ ...-|.++ + ..++..|.
T Consensus 529 lq~i~elq~~l~eltGmd~---~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtn--P---asa~~~G~ 600 (939)
T TIGR00461 529 QELIAQLEKWLCSITGFDA---ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTN--P---ASAAMAGM 600 (939)
T ss_pred HHHHHHHHHHHHHHHCCCC---cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcC--H---HHHHHCCC
Confidence 6889999999999999972 1333344443322 2344431111 12344 45556442 2 23566799
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC-HHHH-HHHHHcCcEEEEeCCCcCCC-C
Q 037063 250 RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS-YMWM-SVAAEKGWHVLLDATALGSK-D 326 (588)
Q Consensus 250 ~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p-l~~I-~~a~~~g~~vvvDaa~~~~~-d 326 (588)
+|+.|+.+ ++|.+|+++|++++++ ...++++|++++++| +|.+.| +++| ++||++|..+++|+++..+. -
T Consensus 601 ~Vv~V~~d-~~G~iDle~L~~~i~~-----~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~ 673 (939)
T TIGR00461 601 QVVPVNCD-QDGNIDLVDLKNKAEQ-----HGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVG 673 (939)
T ss_pred EEEEeccC-CCCCcCHHHHHHHHhh-----cCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCC
Confidence 99999998 8899999999999971 124799999999999 799988 9999 99999999999999986641 0
Q ss_pred CCCCCCCCCCCcEEEeccCccCC----CCCCceEEEEEeCcchhcccCCCCCC-CceEeeecCCCccccccccccccccc
Q 037063 327 MDTLGLSLFKPDFLICSFYKIFG----ENPSGFGCLFVKKSSASVLSGSTSSV-STIMGIEPSFSEIIELETLDESSQSK 401 (588)
Q Consensus 327 ~~~l~l~~~~~D~vv~S~~K~~G----~~P~G~G~L~v~~~~~~~l~~~~~g~-~g~v~~~~~~~~~~~~~~~~~~~f~e 401 (588)
+. ....+++|++++|.||.|| .+|.|+|++.+|+.+... ..|+ .+.. .. ...+.. .
T Consensus 674 l~--~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~----lPg~~v~~t--~d-------~~greq----~ 734 (939)
T TIGR00461 674 LT--SPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPF----LPKHDVVSM--IT-------GIGGSK----S 734 (939)
T ss_pred CC--CccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhh----cCCCccccc--cc-------CCCCcc----c
Confidence 11 1123449999999999554 225567999999875433 3332 1110 00 000000 0
Q ss_pred CC-CCC--ccchhhHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE
Q 037063 402 FP-ESS--ISGVSSKLVECKGLDHADALG---LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS 475 (588)
Q Consensus 402 ~G-T~~--~~~~~~~~al~~aL~~l~~~G---~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i 475 (588)
.| +.+ +-+. ..+..+.-++..+| +.++.+....+++|+.++|++. .++..+......-.-
T Consensus 735 Iga~s~~~~g~a---~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~-----------~~~l~~~~~~~~~hE 800 (939)
T TIGR00461 735 IGSVSAAPYGSA---SILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDH-----------YPILFVGTLKHVAHE 800 (939)
T ss_pred cccccccccCcH---HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcc-----------CcccccCCCCceeEE
Confidence 11 222 1111 12224444555555 6777888888999999999872 122222110001112
Q ss_pred EEEEeecC-CCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHH
Q 037063 476 LAFNVFDW-NGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFED 554 (588)
Q Consensus 476 v~f~~~~~-~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eD 554 (588)
+.|.+... +...+...++.+.|.++||+-.+- .-| ..|.-.||++ --++.+|
T Consensus 801 fv~~~~~~~~~~g~~~~dIakrL~d~G~hapt~--~~p-----------------------v~g~lmiepT--E~eskee 853 (939)
T TIGR00461 801 CILDLRPLKAKTGIEAIDVAKRLQDYGFHAPTL--SFP-----------------------VPGTLMVEPT--ESESLEE 853 (939)
T ss_pred EEEeccchhhhcCCCHHHHHHHHHhCCeecccc--CCc-----------------------cCCeEEEEee--ccCCHHH
Confidence 33333310 111256788888888899975431 100 0231266666 4789999
Q ss_pred HHHHHHHHHHhhhhh-hcccccc
Q 037063 555 TYRLWAFVSRFLDAD-FVEKERW 576 (588)
Q Consensus 555 v~~li~~l~~~l~~~-~~~~~~~ 576 (588)
||+|++++.++.++- -|+...|
T Consensus 854 lD~f~~al~~I~~e~~~~~~g~~ 876 (939)
T TIGR00461 854 LDRFCDAMIAIKEEINALVAGQP 876 (939)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999998875533 3343344
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-15 Score=169.01 Aligned_cols=313 Identities=14% Similarity=0.103 Sum_probs=192.1
Q ss_pred HHHHHHHHHHh----CCCCCCceEEEecCHHHHHHHHHHhCCC-CCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 182 SKIRKRIMDFM----NISEDDYTLVFTANQSSAFKLLAESYPF-YSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 182 ~~~r~~ia~~l----ga~~~e~~vvft~g~T~al~lv~~s~~~-~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++|+.|++++ |.+.+..+|++|+|+++|+.+++..+ . .+||.|++....+..+ ...++..|++++.+++
T Consensus 171 ~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l-~~~~gd~Vli~~P~Y~~y----~~~~~~~g~~~v~~~l 245 (534)
T PLN02231 171 KGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSEKDGILCPIPQYPLY----SASIALHGGTLVPYYL 245 (534)
T ss_pred HHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHh-ccCCCCEEEEeCCCChhH----HHHHHHcCCEEEEEec
Confidence 46777777776 43333345999999999999999998 6 4799987665544322 3345668999999998
Q ss_pred cCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCc-C---C-C-
Q 037063 257 AWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATAL-G---S-K- 325 (588)
Q Consensus 257 ~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~-~---~-~- 325 (588)
+.+ ++.+|.++|+++++.. +....+++++++++++||||..++.+++ ++|+++|++||.|.+-. . + .
T Consensus 246 ~~~~~~~~d~~~Le~~l~~~--~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~ 323 (534)
T PLN02231 246 DEATGWGLEISELKKQLEDA--RSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKK 323 (534)
T ss_pred CcccCCCCCHHHHHHHHHHH--hhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC
Confidence 733 3579999999999721 1111268999999999999999998774 77899999999999821 1 1 0
Q ss_pred --CCCCC----CCCCCCC-cEEEeccCc-cCCCCCCceEEEEE---eCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 326 --DMDTL----GLSLFKP-DFLICSFYK-IFGENPSGFGCLFV---KKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 326 --d~~~l----~l~~~~~-D~vv~S~~K-~~G~~P~G~G~L~v---~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
.+..+ +...... =+++.|+.| ++|.+..++|++.+ .+++++.+.....-
T Consensus 324 ~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~~-------------------- 383 (534)
T PLN02231 324 FHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASV-------------------- 383 (534)
T ss_pred cccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHhh--------------------
Confidence 01111 1110011 245669999 55754567999987 45565544322100
Q ss_pred cccccccCCCCCccchhhHHHHHHHH----------H-HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEE
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGL----------D-HADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRI 463 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL----------~-~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i 463 (588)
..++....+ .+...++ + ++++ .+.+.+..++.++++.+.|.++ +++.+
T Consensus 384 ------~~~s~~~~Q----~~~~~~l~~p~~~~~~y~~~~~~--~~~i~~~~~~r~~~l~~~L~~~---------~gi~~ 442 (534)
T PLN02231 384 ------NLCSNISGQ----ILASLVMSPPKPGDESYESYMAE--KDGILSSLARRAKTLEDALNSL---------EGVTC 442 (534)
T ss_pred ------hcCCChHHH----HHHHHHhCCCCCCcchHHHHHHH--HHHHHHHHHHHHHHHHHHHhcC---------CCcee
Confidence 000011111 1111222 1 1111 2445667777788888888874 55666
Q ss_pred eCCCCCCCcccEEEE-EeecCCCC-------CcCHH-H-HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCC
Q 037063 464 YGPKVMFDRGPSLAF-NVFDWNGT-------RIDPA-L-VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTN 533 (588)
Q Consensus 464 ~~p~~~~~rg~iv~f-~~~~~~g~-------~i~~~-~-v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~ 533 (588)
..| .|+++.| .+.-..+. ...++ . ..+++++.||.+.+|..+. .
T Consensus 443 ~~p-----~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg----------------~----- 496 (534)
T PLN02231 443 NKA-----EGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFG----------------Q----- 496 (534)
T ss_pred cCC-----CeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccC----------------C-----
Confidence 543 4676666 22110000 00112 2 3567788999999885431 0
Q ss_pred CCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhhhccc
Q 037063 534 ETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDADFVEK 573 (588)
Q Consensus 534 ~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~~~~~ 573 (588)
..|...+|+++ ..+.|+++..++.|.+|+++ |++|
T Consensus 497 --~~g~~~~Rit~--~~~~e~l~eal~RL~~~~~~-~~~~ 531 (534)
T PLN02231 497 --VPGTWHFRCTI--LPQEDKIPAIVSRLTEFHKS-FMDE 531 (534)
T ss_pred --CCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHH-HHHH
Confidence 02223799997 46889988888888887665 4543
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-15 Score=164.64 Aligned_cols=302 Identities=13% Similarity=0.054 Sum_probs=184.4
Q ss_pred HHHHHHHHHh----C--CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 183 KIRKRIMDFM----N--ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 183 ~~r~~ia~~l----g--a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++|+.|++++ | ++++ +|++|+|+++|+.+++. + +.+||+|++....+.. +.. ......|++++.+++
T Consensus 77 ~LReaia~~~~~~~g~~~~~~--~I~it~G~~~al~~~~~-l-~~~Gd~Vlv~~P~Y~~-~~~--~~~~~~g~~~v~v~~ 149 (433)
T PRK06855 77 ETREFLAELNNKRGGAQITPD--DIIFFNGLGDAIAKIYG-L-LRREARVIGPSPAYST-HSS--AEAAHAGYPPVTYRL 149 (433)
T ss_pred HHHHHHHHHHHhccCCCCCHh--HEEEcCcHHHHHHHHHH-h-cCCCCeEEEeCCCCch-HHH--HHHHhcCCeEEEEec
Confidence 6677777765 4 4454 49999999999999985 6 7899997765444332 211 112345888888888
Q ss_pred cCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCC--cC--CCCC
Q 037063 257 AWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATA--LG--SKDM 327 (588)
Q Consensus 257 ~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~--~~--~~d~ 327 (588)
+.. +..+++++|++++.. .++++++++++++||||..++.+++ ++|+++|++||.|.+. +. +...
T Consensus 150 ~~~~~~~~d~~~l~~~~~~------~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~ 223 (433)
T PRK06855 150 DPENNWYPDLDDLENKVKY------NPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKT 223 (433)
T ss_pred ccccCCCCCHHHHHHHHhc------CCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Confidence 632 346899999999861 1357899999999999999998774 6789999999999983 21 1101
Q ss_pred CCC-CCCCCCCcEEEeccCccCCCCCCceEEEEEeC----c----chhcccCCCCCCCceEeeecCCCcccccccccccc
Q 037063 328 DTL-GLSLFKPDFLICSFYKIFGENPSGFGCLFVKK----S----SASVLSGSTSSVSTIMGIEPSFSEIIELETLDESS 398 (588)
Q Consensus 328 ~~l-~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~----~----~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~ 398 (588)
.++ .+.....-+++.|+.|.|+.+...+|++++.. . .++.+......
T Consensus 224 ~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~~------------------------ 279 (433)
T PRK06855 224 VPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKMI------------------------ 279 (433)
T ss_pred CCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhcc------------------------
Confidence 111 11111123788999998875457799999842 1 11111111000
Q ss_pred cccCCCCCccchhhHHHHHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE
Q 037063 399 QSKFPESSISGVSSKLVECKGLDH--ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL 476 (588)
Q Consensus 399 f~e~GT~~~~~~~~~~al~~aL~~--l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv 476 (588)
..+++.+.+ .++..+|+. .++. +++..+..++..+++.+.|.++ +++.+..| .|+..
T Consensus 280 --~~~~~~~~Q----~a~~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~~L~~~---------~~~~~~~p-----~gg~~ 338 (433)
T PRK06855 280 --EVCSTTLPQ----MAIPRIMSHPEYKNY-LKERNKRYEKRSNIAYEKLKDV---------PGLKVNRT-----NGAFY 338 (433)
T ss_pred --ccCCChHHH----HHHHHhhcCCcHHHH-HHHHHHHHHHHHHHHHHHHhcC---------CCeeccCC-----CeeEE
Confidence 111222222 222333321 1111 3455666666677777887663 44554433 35544
Q ss_pred EE-EeecCC-----CCC-------------------cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcC
Q 037063 477 AF-NVFDWN-----GTR-------------------IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSG 531 (588)
Q Consensus 477 ~f-~~~~~~-----g~~-------------------i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~ 531 (588)
.+ .+++.- +.. -+.+.+..++.+.||.+.+|....
T Consensus 339 ~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~-------------------- 398 (433)
T PRK06855 339 MTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFC-------------------- 398 (433)
T ss_pred EeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCC--------------------
Confidence 44 333210 000 022334567888999999885431
Q ss_pred CCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 532 TNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 532 ~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.....||+|++.. +.|+++..++.|++++++
T Consensus 399 -----~~~~~~Rls~~~~-~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 399 -----TELNGFRVTLLER-DEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred -----CCCCceEEEECCC-cHHHHHHHHHHHHHHHHH
Confidence 0011599999864 689999999999998865
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-16 Score=163.84 Aligned_cols=282 Identities=13% Similarity=-0.016 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHhC---CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 179 ELESKIRKRIMDFMN---ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 179 ~~~~~~r~~ia~~lg---a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
++.+.+.+.+.+..| ++++ +|++|+|+++++.+++..+..++||+|+++...+. .+ ...++..|++++.++
T Consensus 60 ~lr~~ia~~~~~~~~~~~~~~~--~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~-~~---~~~~~~~g~~~~~v~ 133 (357)
T TIGR03539 60 ELREAIVDWLERRRGVPGLDPT--AVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYP-TY---EVGALLAGATPVAAD 133 (357)
T ss_pred HHHHHHHHHHHHhcCCCCCCcC--eEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcH-HH---HHHHHhcCCEEeccC
Confidence 344444444444434 5454 59999999999999888765689999876554433 22 233466799887763
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC-C---CCC
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG-S---KDM 327 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~-~---~d~ 327 (588)
+.+ .+. ..++++|++++++||||..+|.++ | ++|+++|+++|+|.+... . ..+
T Consensus 134 --------~~~----~l~-------~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 194 (357)
T TIGR03539 134 --------DPT----ELD-------PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPV 194 (357)
T ss_pred --------Chh----hcC-------ccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCc
Confidence 112 222 157899999999999999999665 5 788999999999998431 1 101
Q ss_pred CCCCCC----CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCC
Q 037063 328 DTLGLS----LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP 403 (588)
Q Consensus 328 ~~l~l~----~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G 403 (588)
..++.. ...-.+++.|++|.||.+...+|+++.++++++.+....... + .+
T Consensus 195 ~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~~~~~~~~~~~~~~-~------------------------~~ 249 (357)
T TIGR03539 195 SILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLTVRKHA-G------------------------LM 249 (357)
T ss_pred cceecccCCCccccEEEEeccccccCCCceeEEEEecCHHHHHHHHHHHhhc-c------------------------cC
Confidence 111110 112347888999988753455899998887776554221100 0 00
Q ss_pred CCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecC
Q 037063 404 ESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDW 483 (588)
Q Consensus 404 T~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~ 483 (588)
+..+.+ .++..+|+.-. .++.+.++.+..++++.+.|.+. ++.+..| .++++.+....
T Consensus 250 ~~~~~q----~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~L~~~----------g~~~~~p-----~~~~~~~~~~~- 307 (357)
T TIGR03539 250 VPAPVQ----AAMVAALGDDG--HVAEQKARYAARRAQLKPALEKA----------GFRIDHS-----EAGLYLWATRG- 307 (357)
T ss_pred CCHHHH----HHHHHHcCCHH--HHHHHHHHHHHHHHHHHHHHHHc----------CCCCcCC-----CccEEEEEECC-
Confidence 111111 22334443211 13555666667777888888763 2333322 35554444322
Q ss_pred CCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHH
Q 037063 484 NGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 484 ~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l 562 (588)
.+...+.+.|.++||.+.+|.... . .+..+||+|++. +.|+++++++.|
T Consensus 308 ----~~~~~~~~~l~~~gV~v~pg~~f~----------------~--------~~~~~iRis~~~--~~~~i~~~~~~l 356 (357)
T TIGR03539 308 ----EDAWDTVDRLAELGILVAPGDFYG----------------P--------AGSQHVRVALTA--TDERIAAAVARL 356 (357)
T ss_pred ----CCHHHHHHHHHhCCEEECCccccC----------------C--------CCCCeEEEEecC--CHHHHHHHHHhh
Confidence 134566777888999999874210 0 122389999875 678888888765
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.9e-17 Score=149.68 Aligned_cols=164 Identities=16% Similarity=0.162 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCC
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWP 259 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~ 259 (588)
++++++.++++++.+++ .+++++|+|+|+.+++.++ .+++++|+ ....|++ ..| ..++..|++++.++.+ .
T Consensus 2 ~~~~~~~l~~~~~~~~~--~~~~~~~~t~a~~~~~~~~-~~~~~~v~~~~~~~~~--~~~--~~~~~~g~~~~~v~~~-~ 73 (170)
T cd01494 2 LEELEEKLARLLQPGND--KAVFVPSGTGANEAALLAL-LGPGDEVIVDANGHGS--RYW--VAAELAGAKPVPVPVD-D 73 (170)
T ss_pred HHHHHHHHHHHcCCCCC--cEEEeCCcHHHHHHHHHHh-CCCCCEEEEeecccce--ehh--hHHHhcCCEEEEeccC-C
Confidence 36899999999985443 4999999999999999998 57788855 5566665 222 3557789999999986 3
Q ss_pred CCccCH--HHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC-CCCCCCCCCC
Q 037063 260 NLRIHS--GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK-DMDTLGLSLF 335 (588)
Q Consensus 260 ~~~i~~--e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~-d~~~l~l~~~ 335 (588)
++..+. +++++.. ..++++++++++++|++|...|+++| ++|+++|+++++|+++..+. ....++....
T Consensus 74 ~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 146 (170)
T cd01494 74 AGYGGLDVAILEELK-------AKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEG 146 (170)
T ss_pred CCccchhhhhhhhcc-------ccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccc
Confidence 332222 2333322 23689999999999999999999999 99999999999999987752 1111234455
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEe
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVK 361 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~ 361 (588)
++|+++.|+||++| +.|.|++++|
T Consensus 147 ~~d~~~~s~~K~~~--~~~~G~l~~~ 170 (170)
T cd01494 147 GADVVTFSLHKNLG--GEGGGVVIVK 170 (170)
T ss_pred cCCEEEEEcccccC--CCceEEEEeC
Confidence 69999999999999 5699999986
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=160.10 Aligned_cols=294 Identities=15% Similarity=0.096 Sum_probs=195.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcC-CEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRG-ARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G-~~v~~v~~ 256 (588)
++...++.++++++++. . .++|++++|.|..+++.+. .+||..++....-|.+... ....+..+ +....+.
T Consensus 34 D~~~~~~e~~~ae~~g~--~--a~~Fv~sGT~aN~lal~~~-~~~~~~vi~~~~aHi~~~E--~Ga~~~~~~~~~~~~~- 105 (342)
T COG2008 34 DPTTNALEQRIAELFGK--E--AALFVPSGTQANQLALAAH-CQPGESVICHETAHIYTDE--CGAPEFFGGGQKLPIV- 105 (342)
T ss_pred CHHHHHHHHHHHHHhCC--c--eEEEecCccHHHHHHHHHh-cCCCCeEEEeccccceecc--cCcHHHHcCCceeccC-
Confidence 67788999999999998 3 3999999999999999998 7999998876665532221 11112222 2222222
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcC------CCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALG------SKD 326 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~------~~d 326 (588)
+.++|.+++++|+..|.. .......+.++++..+.+.-|+++|+++| +.||++|+++++|++-+. +++
T Consensus 106 ~g~~Gklt~e~v~~~i~~--~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~ 183 (342)
T COG2008 106 PGADGKLTPEDVEAAIRP--DDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVA 183 (342)
T ss_pred CCCCCCcCHHHHHHhhcC--CCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCC
Confidence 227899999999999872 11234567777777777788999999985 679999999999998222 222
Q ss_pred CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCC--CCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 327 MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGS--TSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 327 ~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~--~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
..++. -.+|.+.++++|-.|. | +-.+|+.+.+++++++.. ..|+ ++- .. +|
T Consensus 184 ~~~~~---~~~D~v~~~~tK~g~~-~-~gAiv~gn~~~~~~a~~~rK~~Gg-l~~---------------k~-r~----- 236 (342)
T COG2008 184 LKTIK---SYVDSVSFCLTKGGGA-P-VGAIVFGNRDFAKRARRWRKRAGG-LMR---------------KA-RF----- 236 (342)
T ss_pred HHHHH---hhCCEEEEecccCCcc-e-eeeEEEcCHHHHHHHHHHHHHhcc-cHh---------------hh-hH-----
Confidence 22221 2399999999997773 4 457777888887765432 1221 220 00 23
Q ss_pred CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCC
Q 037063 405 SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWN 484 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~ 484 (588)
.+ ..++-+++.--+.....|...++++|.+.|.+ .+++++..| ...++|-+.++..
T Consensus 237 ---------la-A~~~~~l~~~~~~~~~~Han~mA~~La~~~~~---------~~G~~~~~~----~~tN~vf~~l~~~- 292 (342)
T COG2008 237 ---------LA-AQGLYALEDDVWRLAADHANAMAARLAEGLEA---------KPGVKLAFP----VETNMVFVRLPES- 292 (342)
T ss_pred ---------HH-HHHHHHHhccHHHHHHHHHHHHHHHHHHhhhh---------cCCceeccC----CcccEEEEECChH-
Confidence 11 13344444322566778888899999999986 378888876 2456766666541
Q ss_pred CCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCc-cEEEEecCCCCCHHHHHHHHHHHH
Q 037063 485 GTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGV-SVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 485 g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~-~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
. ...+...|+..-.|-.- .+. ..||+-.++.++.|||+++++.++
T Consensus 293 -------~-i~~l~~~~~~~~~~~~~--------------------------~~~~~~vRfvts~a~~~edv~~~~~~~~ 338 (342)
T COG2008 293 -------A-IEALRLAGALFYRGVLI--------------------------GAHGEIVRFVTSWATSEEDVDELVAAIK 338 (342)
T ss_pred -------H-HHHHHhhchhheeeeec--------------------------cCCCceEEEEeeccCCHHHHHHHHHHHH
Confidence 1 23344444433222100 111 379999999999999999999998
Q ss_pred Hhh
Q 037063 564 RFL 566 (588)
Q Consensus 564 ~~l 566 (588)
+++
T Consensus 339 ~~~ 341 (342)
T COG2008 339 ALL 341 (342)
T ss_pred Hhh
Confidence 864
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=159.97 Aligned_cols=282 Identities=14% Similarity=0.030 Sum_probs=178.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc---CCCchhHHHHHHHHHHhcCCEEEEE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV---YDHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~---~e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
.++.+++++.+|+++|+++++ +++++|+++|+..++.++ .++||+|++. ...|+ .+...++..|+++...
T Consensus 53 ~~~~~~Le~~lA~~~g~~~e~--ilv~~gg~~a~~~~~~al-~~~gd~Vli~~~d~p~~~----s~~~~~~l~ga~~~~~ 125 (346)
T TIGR03576 53 AIFEEKVQELGREHLGGPEEK--ILVFNRTSSAILATILAL-EPPGRKVVHYLPEKPAHP----SIPRSCKLAGAEYFES 125 (346)
T ss_pred HHHHHHHHHHHHHHcCCCcce--EEEECCHHHHHHHHHHHh-CCCCCEEEECCCCCCCch----hHHHHHHHcCCEEecc
Confidence 477889999999999997665 999999999999999999 8999997643 23443 2344556678876322
Q ss_pred eccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccC---CHHHH-HHHHHcCcEEEEeCCCcCCCC-C-C
Q 037063 255 EFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARY---SYMWM-SVAAEKGWHVLLDATALGSKD-M-D 328 (588)
Q Consensus 255 ~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~---pl~~I-~~a~~~g~~vvvDaa~~~~~d-~-~ 328 (588)
.+.++++. . +++++|+++. ++++|.++ |+++| ++|+++|++|++|.++..+.. . .
T Consensus 126 --------~~l~~l~~--~--------~~~~lIiitg-~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~ 186 (346)
T TIGR03576 126 --------DELSELKK--I--------DGTSLVVITG-STMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYG 186 (346)
T ss_pred --------CCHHHHhh--C--------cCceEEEEEC-CCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCC
Confidence 13344321 1 4578888876 58899995 67777 889999999999999776420 0 1
Q ss_pred CCCCCCCCCcEEEeccCccC-CCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCc
Q 037063 329 TLGLSLFKPDFLICSFYKIF-GENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~-G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~ 407 (588)
.-......+|+++.|++|.+ | +. +|+++.++++++.+....... .| |.+.
T Consensus 187 ~~~~~~~~~divv~s~SKalaG--~r-~G~v~~~~~li~~l~~~~~~~----------------------~~----s~~~ 237 (346)
T TIGR03576 187 QPPALDLGADLVVTSTDKLMDG--PR-GGLLAGRKELVDKIKSVGEQF----------------------GL----EAQA 237 (346)
T ss_pred CCCHHHcCCcEEEeccchhccc--cc-eEEEEeCHHHHHHHHHhhcCc----------------------cc----CccH
Confidence 10011234799999999966 5 44 699999998887765433110 01 1111
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTR 487 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~ 487 (588)
+. .++..++|+.+ ..+.+.++.+...+.+.+.+.++ .++ + ..++.+-+.+...
T Consensus 238 ~~---~~aa~~aL~~~---~~~~~~~~l~~r~~~~~~~l~~~------------~~~-~----~~~~f~~~~~~~~---- 290 (346)
T TIGR03576 238 PL---LAAVVRALEEF---ELSRIRDAFKRKEEVYLRLFDKL------------NVE-R----TPTGFVIKGVEEE---- 290 (346)
T ss_pred HH---HHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHhC------------CCC-c----CCCeEEEEeCCCC----
Confidence 11 13444566542 23445555566666666655543 122 1 1223333333220
Q ss_pred cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC-CHHHHHHHHHHHHHhh
Q 037063 488 IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT-NFEDTYRLWAFVSRFL 566 (588)
Q Consensus 488 i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~-t~eDv~~li~~l~~~l 566 (588)
-+.+.+.++|.++||.+++|..- . ...++||+|++... +..+.++++++|++-|
T Consensus 291 ~~~~~~~~ll~~~gV~v~~~~~f----------------~---------~~~~~vRis~~~~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 291 KLIEIGLDLLRNYGIITITAVGM----------------P---------GASKTLRFDLAAKDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred CHHHHHHHHHHhCCEEEeCCccc----------------C---------CCCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence 12356789999999999976210 0 01129999988321 1127999999998765
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-15 Score=159.86 Aligned_cols=306 Identities=16% Similarity=0.106 Sum_probs=189.1
Q ss_pred eeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHH
Q 037063 112 YVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDF 191 (588)
Q Consensus 112 ~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~ 191 (588)
.-|+.+-.+++.+..++-.+...... .|.. .|+ ..+ ...+++.++-+.++++
T Consensus 40 P~~~~~~~~~~~~~~i~~~~l~~~~n---~n~~-------~~~----------~~P--------~~~~~E~~vi~~l~~l 91 (373)
T PF00282_consen 40 PRFFGFVPGGPSPASILADLLASALN---QNGF-------TWE----------ASP--------AATEIEREVIRWLADL 91 (373)
T ss_dssp TTBESSSHT--CHHHHHHHHHHHHHT----BTT-------STT----------TSH--------HHHHHHHHHHHHHHHH
T ss_pred hhHhhhccCCccHHHHHHHHHHhhhc---cccc-------ccc----------ccc--------ccccchHHHHHHHHHH
Confidence 45788888888888777765433321 1110 011 011 1278999999999999
Q ss_pred hCCCCC-----CceEEEecCHHHHHHHHHHhCC-----------CCCCCe--EEEcC-CCchhHHHHHHHHHHhcCCEEE
Q 037063 192 MNISED-----DYTLVFTANQSSAFKLLAESYP-----------FYSNPR--LLTVY-DHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 192 lga~~~-----e~~vvft~g~T~al~lv~~s~~-----------~~~gd~--ll~~~-e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
+|.+.+ +-.-+||+|+|+++-..+.+.. .....+ |++.. .|+| + .+.|.-.|..++
T Consensus 92 ~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S--~---~Kaa~~lGlg~~ 166 (373)
T PF00282_consen 92 FGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYS--I---EKAARILGLGVR 166 (373)
T ss_dssp TTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-TH--H---HHHHHHTTSEEE
T ss_pred hCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccH--H---HHhcceeeeEEE
Confidence 999722 2458999999999754433221 110223 44443 4543 2 567788899999
Q ss_pred EEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC----CCC
Q 037063 253 SAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS----KDM 327 (588)
Q Consensus 253 ~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~----~d~ 327 (588)
.||++ +++++|.++|+++|.+. ......+-+|+.+..++.+|.+-|+++| ++|++++++++||||-... ...
T Consensus 167 ~I~~~-~~~~md~~~L~~~l~~~--~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~ 243 (373)
T PF00282_consen 167 KIPTD-EDGRMDIEALEKALEKD--IANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSPEY 243 (373)
T ss_dssp EE-BB-TTSSB-HHHHHHHHHHH--HHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTT
T ss_pred EecCC-cchhhhHHHhhhhhccc--ccccccceeeeccCCCcccccccCHHHHhhhccccceeeeecccccccccccccc
Confidence 99999 78999999999999731 1111234579999999999999999999 9999999999999984441 223
Q ss_pred CCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcch-h-cc--cCCCCCCCceEeeecCCCcccccccccccccccCC
Q 037063 328 DTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSA-S-VL--SGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP 403 (588)
Q Consensus 328 ~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~-~-~l--~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G 403 (588)
..+.....++|.+.+++|||++. |.++|++++|++.. . .+ .+.+.+. .. ... ....+.. -+.-.|
T Consensus 244 ~~~~~gi~~adSit~d~HK~l~~-P~~~~~~l~r~~~~l~~~~~~~~~Yl~~--~~---~~~--~~~~~~~---~~tl~~ 312 (373)
T PF00282_consen 244 RHLLFGIERADSITIDPHKWLGV-PYGCGVLLVRDKSDLRDAFSINADYLGN--DD---RES--DESYDYG---DYTLQG 312 (373)
T ss_dssp GGGGTTGGGESEEEEETTTTTS--SSS-EEEEESSGGGHHGGGEEEETCTT---S----SSS---GGGCEE---EGSSSS
T ss_pred cccccccccccccccchhhhhcC-CccceeEEeecccchHHHhccChhhhcc--cc---ccc--ccccccc---cccccc
Confidence 33333345599999999999987 99999999998643 2 11 1112110 00 000 0000000 000011
Q ss_pred CCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEee
Q 037063 404 ESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVF 481 (588)
Q Consensus 404 T~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~ 481 (588)
+..+.. ..+...++.+-..|+.++.++..++++++.+.|++. +.+++..+ ...++|+|.++
T Consensus 313 SR~~~a----lk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~---------~~~el~~~----~~~~~vcFr~k 373 (373)
T PF00282_consen 313 SRRFRA----LKLWATLKSLGREGYRERIRRCIELARYLADRLRKD---------PRFELVNE----PDLNIVCFRYK 373 (373)
T ss_dssp SGHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---------TTEEESST----TSSSEEEEEES
T ss_pred cccchH----HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC---------CCEEEEcC----CCceEEEEEeC
Confidence 111111 234456666655678888888899999999999984 66898875 45789999863
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=161.68 Aligned_cols=279 Identities=13% Similarity=0.006 Sum_probs=172.5
Q ss_pred HHHHHHHHHh----C---CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 183 KIRKRIMDFM----N---ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 183 ~~r~~ia~~l----g---a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
++|+.|++++ | ++++ +|++|+|+++++.+++..+.+++||+|+++...+... ...++..|+++..++
T Consensus 66 ~lr~~ia~~l~~~~~~~~~~~~--~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~----~~~~~~~g~~~~~~~ 139 (364)
T PRK07865 66 ELREAIVGWLARRRGVTGLDPA--AVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTY----EVGARLAGATVVRAD 139 (364)
T ss_pred HHHHHHHHHHHHHcCCCCCCcc--cEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccH----HHHHHhcCCEEEecC
Confidence 4556666655 5 4455 4999999999999988877568999987655443322 334566799888764
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC-CC---CC
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG-SK---DM 327 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~-~~---d~ 327 (588)
. .++ +.. .++++|+++.++||||..++.++ | ++|+++|+++|+|.+..- .. .+
T Consensus 140 ~--------~~~----l~~-------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 200 (364)
T PRK07865 140 S--------LTE----LGP-------QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPV 200 (364)
T ss_pred C--------hhh----CCc-------ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCC
Confidence 1 122 220 46899999999999999999765 4 678999999999998432 10 01
Q ss_pred CCCCC---C-CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCC
Q 037063 328 DTLGL---S-LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP 403 (588)
Q Consensus 328 ~~l~l---~-~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G 403 (588)
..+.. . ...-.+++.|++|.||.+..++|+++.++++++.+....... + ..
T Consensus 201 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~~~~~~~~~~~~-~------------------------~~ 255 (364)
T PRK07865 201 SILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAELLEVRKHA-G------------------------MM 255 (364)
T ss_pred ccccccccCCccceEEEEeechhccCCCceeeEEEecCHHHHHHHHHHHHhc-C------------------------CC
Confidence 11110 0 112348899999999754456999998888776554322100 0 00
Q ss_pred CCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecC
Q 037063 404 ESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDW 483 (588)
Q Consensus 404 T~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~ 483 (588)
++.+.+ .++..+|+.-.. +++..++.+..++++.+.|.++ ++.+..| .+++..+.-.+
T Consensus 256 ~~~~~q----~~~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~-----~~~~~~~~~~~- 313 (364)
T PRK07865 256 VPAPVQ----AAMVAALGDDAH--VREQRERYARRRAVLRPALEAA----------GFRVDHS-----EAGLYLWATRG- 313 (364)
T ss_pred cCHHHH----HHHHHHhCCHHH--HHHHHHHHHHHHHHHHHHHHHc----------CCcccCC-----CccEEEEEeCC-
Confidence 111111 223334432111 3555666677777888888763 2334332 34443332222
Q ss_pred CCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 484 NGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 484 ~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
.+...+.+.|.++||.+.+|.... . .+..++|++++. +.|+++++++.|+
T Consensus 314 ----~~~~~~~~~l~~~gv~v~pg~~f~----------------~--------~~~~~iRi~~~~--~~~~~~~~~~~l~ 363 (364)
T PRK07865 314 ----EDCWDTVAWLAERGILVAPGDFYG----------------P--------AGAQHVRVALTA--TDERIAAAVERLA 363 (364)
T ss_pred ----CCHHHHHHHHHHCCEEEeCccccC----------------c--------CCCCEEEEEecC--CHHHHHHHHHHhh
Confidence 234566777888999998874221 0 112389999874 6899999988764
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-15 Score=159.48 Aligned_cols=289 Identities=10% Similarity=0.072 Sum_probs=182.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--CC----CCCeEEE-cCCCchhHHHHHHHHHHhcCCE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--FY----SNPRLLT-VYDHENEAAALMIESSKKRGAR 250 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--~~----~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~ 250 (588)
.+...++.+++++++|.+ .++++.|+++|+.+++..+. .. ++++|++ ...||. ...+.. . .++.
T Consensus 68 ~~~~~~l~~~la~~~g~~----~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~-~~~~~~-~---~~~~ 138 (379)
T TIGR00707 68 TEPQEELAEKLVEHSGAD----RVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHG-RTMGAL-S---ATGQ 138 (379)
T ss_pred CHHHHHHHHHHHhhCCCC----EEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCC-ccHHHH-H---hcCC
Confidence 356779999999999974 49999999999998877541 11 3678664 444443 221211 1 1211
Q ss_pred EE----EEeccCCCCc----cCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCcc-CC---HHHH-HHHHHcCcEEEE
Q 037063 251 VS----SAEFAWPNLR----IHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGAR-YS---YMWM-SVAAEKGWHVLL 317 (588)
Q Consensus 251 v~----~v~~~~~~~~----i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~-~p---l~~I-~~a~~~g~~vvv 317 (588)
.. ..+.. .+.. -|++++++.++ +++++|++...++++|.. .+ +++| ++|+++|+++++
T Consensus 139 ~~~~~~~~~~~-~~~~~~~~~d~~~l~~~~~--------~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~ 209 (379)
T TIGR00707 139 PKYQKGFEPLV-PGFSYAPYNDIESLKKAID--------DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIF 209 (379)
T ss_pred hhhhccCCCCC-CCceeeCCCCHHHHHHHhh--------hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 11 11111 1111 17889998887 578999999888888875 34 6677 899999999999
Q ss_pred eCCCc-CCCCC--CCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 318 DATAL-GSKDM--DTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 318 Daa~~-~~~d~--~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
|+++. ++.+- ..+......+|++ ++.|.+| ++.++|+++.++++++.+.....+.
T Consensus 210 De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~riG~~~~~~~~~~~~~~~~~~~------------------- 267 (379)
T TIGR00707 210 DEVQTGIGRTGKFFAYEHYGIEPDII--TLAKGLG-GGVPIGATLAKEEVAEAFTPGDHGS------------------- 267 (379)
T ss_pred eccccCCCccchhhhHHhcCCCCCEE--EEccccc-CCcccEEEEEcHHHHhhhcCCCCCC-------------------
Confidence 99965 32110 1111112236765 5789888 3567999999988877665432110
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
.| + .+... .++..++|+.+.. ..+.++.++++++++++|.++... ..+ .+ . ...|.
T Consensus 268 ---~~---~-~~~~~---~~aa~aaL~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~------~~~---~~-~-~~~g~ 323 (379)
T TIGR00707 268 ---TF---G-GNPLA---CAAALAVLEVIEK---ERLLENVKEKGDYFKERLEELGKN------YPN---KE-V-RGKGL 323 (379)
T ss_pred ---CC---C-CCHHH---HHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHhh------CCC---Cc-c-ccCce
Confidence 01 1 11112 2455567776653 346677888888888888764110 011 11 1 12355
Q ss_pred EEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHH
Q 037063 475 SLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFED 554 (588)
Q Consensus 475 iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eD 554 (588)
++.+.+.+ +...+.+.|.++||.++++. ...||+++++..+.||
T Consensus 324 ~~~~~~~~------~~~~~~~~l~~~Gv~v~~~~------------------------------~~~lRi~~~~~~t~~~ 367 (379)
T TIGR00707 324 MLGIELEA------PCKDIVKKALEKGLLVNCAG------------------------------PKVLRFLPPLIITKEE 367 (379)
T ss_pred EEEEEecC------cHHHHHHHHHHCCcEEeeCC------------------------------CCEEEEECCCcCCHHH
Confidence 66666543 24667777888999987531 1289999999999999
Q ss_pred HHHHHHHHHHhh
Q 037063 555 TYRLWAFVSRFL 566 (588)
Q Consensus 555 v~~li~~l~~~l 566 (588)
++++++.|++.+
T Consensus 368 i~~~~~~l~~~~ 379 (379)
T TIGR00707 368 IDEAVSALEEAI 379 (379)
T ss_pred HHHHHHHHHHhC
Confidence 999999998753
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-15 Score=156.99 Aligned_cols=271 Identities=12% Similarity=0.018 Sum_probs=174.8
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNL 261 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~ 261 (588)
.++|+.|++++|+++. .+|++|+|+++++.++.. + +++|+ +++....++ .....++..|++++.++.+.
T Consensus 56 ~~L~~~ia~~~~~~~~-~~I~i~~Gs~e~i~~l~~-~-~~~g~-v~v~~P~y~----~y~~~~~~~g~~~~~v~~~~--- 124 (339)
T PRK06959 56 DGLAACAARYYGAPDA-AHVLPVAGSQAAIRALPA-L-LPRGR-VGIAPLAYS----EYAPAFARHGHRVVPLDEAA--- 124 (339)
T ss_pred HHHHHHHHHHhCCCCc-ccEEECcCHHHHHHHHHH-h-cCCCe-EEEcCCCcH----HHHHHHHHCCCEEEeecccc---
Confidence 6899999999999631 249999999999998765 4 57776 554443332 22455677899999887641
Q ss_pred ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HH---HHHcCcEEEEeCCCc--CC-CCCCCCCCCC
Q 037063 262 RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SV---AAEKGWHVLLDATAL--GS-KDMDTLGLSL 334 (588)
Q Consensus 262 ~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~---a~~~g~~vvvDaa~~--~~-~d~~~l~l~~ 334 (588)
..+. ..+++++++.++||||..++.+++ ++ +++++.++|+|.+-. .+ ..+..+ ..
T Consensus 125 --------~~~~--------~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~--~~ 186 (339)
T PRK06959 125 --------DTLP--------AALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAH--TD 186 (339)
T ss_pred --------hhcc--------ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhc--cC
Confidence 1222 345789999999999999999987 55 456789999999832 22 111111 11
Q ss_pred CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHH
Q 037063 335 FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKL 414 (588)
Q Consensus 335 ~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~ 414 (588)
.+--+++.||.|.||.+..++|+++.++++++.+...... +.+ ..+.+ .
T Consensus 187 ~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li~~l~~~~~~--~~v-------------------------s~~~q----~ 235 (339)
T PRK06959 187 RPGLVVLRSVGKFFGLAGVRAGFVLAAPALLAALRDALGA--WTV-------------------------SGPAR----H 235 (339)
T ss_pred CCCEEEEecChhhcCCcchheEEEecCHHHHHHHHHhcCC--CCC-------------------------cHHHH----H
Confidence 1123788899999996556799999998888776543311 000 00111 2
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHH
Q 037063 415 VECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQ 494 (588)
Q Consensus 415 al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~ 494 (588)
++..+|+.-. . .+...+++++.++++.+.|+++ | ++++. .+..+-+.+. +...+.
T Consensus 236 a~~~~L~~~~-~-~~~~~~~~~~~r~~l~~~L~~~-------g---~~~~~------~~~f~~~~~~-------~~~~l~ 290 (339)
T PRK06959 236 AVRAAFADAA-W-QAAMRERLAADGARLAALLRAH-------G---FAVHA------TPLFSWTDDP-------RAAALH 290 (339)
T ss_pred HHHHHhCcHH-H-HHHHHHHHHHHHHHHHHHHHHC-------C---CCccC------cceEEEEeCC-------CHHHHH
Confidence 3334443211 1 3556677777788888888875 2 22221 1222222221 255677
Q ss_pred HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 495 KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 495 ~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+.|.++||.|+. |. ..+ +||||++ .+.+|+++|+++|+++++.
T Consensus 291 ~~l~~~GI~vr~---~~------------------------~~~--~lRisi~--~~~~e~~~l~~al~~~~~~ 333 (339)
T PRK06959 291 AALARRGIWTRY---FA------------------------PPP--SVRFGLP--ADEAEWQRLEDALAECVPT 333 (339)
T ss_pred HHHHhCCeEEEE---CC------------------------CCC--eEEEECC--CCHHHHHHHHHHHHHHHHH
Confidence 788889999973 21 022 8999973 2778999999999987654
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-16 Score=151.62 Aligned_cols=295 Identities=12% Similarity=0.097 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHH-HHHHHhcCCEEEEEeccCC
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALM-IESSKKRGARVSSAEFAWP 259 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~-~~~a~~~G~~v~~v~~~~~ 259 (588)
..++.+++|+++|-. .-.|++++|.+..+.+..---++|.+|+..+..| ++.|- -.++.-.|+.++.+... +
T Consensus 58 t~rLE~~vA~l~GKE----AgLFv~SGTmgNllaIm~Hc~~rg~eii~gd~~H--I~~~E~gg~s~l~gv~~~tv~~e-~ 130 (384)
T KOG1368|consen 58 TNRLEQRVAELFGKE----AGLFVPSGTMGNLLAIMVHCHQRGSEIIVGDRAH--IHRYEQGGISQLAGVHVRTVKNE-N 130 (384)
T ss_pred HHHHHHHHHHHhCcc----ceeeecccccccHHHHHHHhcCCCceEEeccchh--eeehhccChhhhccceeEeeeeC-C
Confidence 458899999999974 2788888888877777766467899987765555 34331 13344568888888876 8
Q ss_pred CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCC-ccCCHHHH----HHHHHcCcEEEEeCCCcC------CCCCC
Q 037063 260 NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTG-ARYSYMWM----SVAAEKGWHVLLDATALG------SKDMD 328 (588)
Q Consensus 260 ~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG-~~~pl~~I----~~a~~~g~~vvvDaa~~~------~~d~~ 328 (588)
++.+++++|+++|.-.+.....+.|+||++....|.+| ..+|++|+ ++|+++|+.++.|+|-.. ++.++
T Consensus 131 dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk 210 (384)
T KOG1368|consen 131 DGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVK 210 (384)
T ss_pred CCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHH
Confidence 89999999999997211122346899999999999888 99999996 789999999999998221 22234
Q ss_pred CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcc---cCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 329 TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVL---SGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l---~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
.+. .-+|.+...++|-+|. |-| .+++.+++++++. ++...| |+ | +.|-
T Consensus 211 ~i~---~~fDSVsiCLSKglgA-PVG-SViVG~k~FI~kA~~~RKalGG--Gm-------------------R--QsGv- 261 (384)
T KOG1368|consen 211 KIC---SAFDSVSICLSKGLGA-PVG-SVIVGSKDFIDKARHFRKALGG--GM-------------------R--QSGV- 261 (384)
T ss_pred HHH---HhhhhhhhhhhccCCC-Ccc-cEEEccHHHHHHHHHHHHHhcC--ch-------------------h--HHHH-
Confidence 432 1278899999998886 876 6777888888754 344444 33 1 1111
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCC
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNG 485 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g 485 (588)
.. ++...+|+.-..+ +..-.++...|++++. ++ +.+++.-|. ....++.+++....
T Consensus 262 --La----aaaLval~~~~~~-L~~dHk~A~~lAe~~~----~~---------~~i~v~v~a---~etNiv~~~l~q~~- 317 (384)
T KOG1368|consen 262 --LA----AAALVALDENVPL-LRADHKRAKELAEYIN----TP---------EEIRVEVPA---VETNIVNMVLCQAR- 317 (384)
T ss_pred --HH----HHHHHHhhcchHH-HHHHHHHHHHHHHHhc----cc---------cceeeecch---hhcceeeeeccccc-
Confidence 11 1112344432221 3444555555555544 42 446665542 35678888775543
Q ss_pred CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHH-HH
Q 037063 486 TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFV-SR 564 (588)
Q Consensus 486 ~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l-~~ 564 (588)
++++++.+.++++||.+-.|.. ..+|+.||+--|.++|+.++..+ ++
T Consensus 318 --~~~~~l~~~~~k~gi~lm~~~s------------------------------~r~Rivlh~Qvt~~~ve~~~~~~~k~ 365 (384)
T KOG1368|consen 318 --LTAEELCKFLEKNGILLMGGAS------------------------------RRIRIVLHHQVTDEDVEYVKSVLSKK 365 (384)
T ss_pred --CCHHHHHHHHHHCCeEEeeccc------------------------------cceEEEEEEecCHHHHHHHHHHHHHH
Confidence 8899999999999998865521 16999999999999999999999 44
Q ss_pred hhh
Q 037063 565 FLD 567 (588)
Q Consensus 565 ~l~ 567 (588)
|+.
T Consensus 366 ~~~ 368 (384)
T KOG1368|consen 366 FLK 368 (384)
T ss_pred HHh
Confidence 443
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-14 Score=154.97 Aligned_cols=176 Identities=14% Similarity=0.049 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCC-CCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPF-YSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~-~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++.+.+.+.+.+..|.+-+...|++|+|+++++.+++..+-+ ++||.|++....+... ...++..|++++.++.+
T Consensus 64 ~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~----~~~~~~~g~~v~~v~~~ 139 (374)
T PRK05839 64 SLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIY----EGAAIASRAKVLLMPLT 139 (374)
T ss_pred HHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhh----HHHHHhcCCEEEEeecc
Confidence 444445555555556332233599999999999998887633 4788887765544322 34456789999999986
Q ss_pred CC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCc--CC-CCCCC
Q 037063 258 WP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATAL--GS-KDMDT 329 (588)
Q Consensus 258 ~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~--~~-~d~~~ 329 (588)
.. ...++.++. .+ +++++|++++++||||..++.+++ ++|+++|+++|+|.+-. .. .....
T Consensus 140 ~~~~~~~d~~~~--~~---------~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s 208 (374)
T PRK05839 140 KENDFTPSLNEK--EL---------QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPS 208 (374)
T ss_pred cccCCcCCcchh--hh---------ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCC
Confidence 22 233443322 22 358999999999999999998875 66889999999999822 11 00111
Q ss_pred -CC------CCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhccc
Q 037063 330 -LG------LSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLS 369 (588)
Q Consensus 330 -l~------l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~ 369 (588)
+. ...+.--+++.|+.|.||.+..++|+++.++++++.+.
T Consensus 209 ~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~~~~~~~ 255 (374)
T PRK05839 209 LLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDASILKKYK 255 (374)
T ss_pred HhhhhcccCccccCcEEEEeccccccCCccceeEEEecCHHHHHHHH
Confidence 11 11112347888999988865677999999887776554
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-15 Score=162.32 Aligned_cols=297 Identities=15% Similarity=0.055 Sum_probs=172.7
Q ss_pred HHHHHHHHHHh---CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCC---------
Q 037063 182 SKIRKRIMDFM---NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGA--------- 249 (588)
Q Consensus 182 ~~~r~~ia~~l---ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~--------- 249 (588)
.++|+.|++++ ++++++ |++|+|+++++.++. .+ +.+||+|++....+..+ ...++..|+
T Consensus 78 ~~lr~aia~~~~~~~~~~d~--I~it~Ga~~al~~l~-~l-~~~gd~Vlv~~P~y~~~----~~~~~~~g~~~~~~~~~~ 149 (402)
T TIGR03542 78 PFLREAIAENDYRGRIDPEE--IFISDGAKCDVFRLQ-SL-FGSDNTVAVQDPVYPAY----VDSNVMAGRAGVLDDDGR 149 (402)
T ss_pred HHHHHHHHHHHHhcCCCHHH--EEECCCcHHHHHHHH-Hh-cCCCCEEEEeCCCCcch----HHHHHHcCCccccccccc
Confidence 47888888876 677665 999999999999875 45 57899977654443312 445567788
Q ss_pred --EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC
Q 037063 250 --RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG 323 (588)
Q Consensus 250 --~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~ 323 (588)
+++.++.+ ++..+..+ +. . ..++++|++++++||||..++.++ | ++|+++|+++|+|.+..-
T Consensus 150 ~~~~~~v~~~-~~~~~~~~-~~---~-------~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~ 217 (402)
T TIGR03542 150 YSKITYLPCT-KENNFIPD-LP---E-------EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSA 217 (402)
T ss_pred cceEEEeecc-hhhCCCCC-cc---c-------cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhh
Confidence 88888875 22112221 11 1 146899999999999999999554 5 788999999999998321
Q ss_pred --CCC--CCCC-CCCCC-CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccccc
Q 037063 324 --SKD--MDTL-GLSLF-KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDES 397 (588)
Q Consensus 324 --~~d--~~~l-~l~~~-~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~ 397 (588)
.-+ ...+ .+... ..-+++.|+.|.||.+..++|++++.++++......... .. . ...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~~l~~~~~~~~~~--~~------------~-~~~-- 280 (402)
T TIGR03542 218 FISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVPKELTYADGHSVIQ--DW------------E-RRQ-- 280 (402)
T ss_pred hccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEEEEecHHHhhcchhhHHH--HH------------H-HHh--
Confidence 100 0111 11111 123668899999986556799999988765111000000 00 0 000
Q ss_pred ccccCCCCCccchhhHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 398 SQSKFPESSISGVSSKLVECKGLDHADALG---LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 398 ~f~e~GT~~~~~~~~~~al~~aL~~l~~~G---~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
.....+...+.+ . .+...+...+ +.+..++.+..++++.+.|.+. +++++.+ ..+.
T Consensus 281 ~~~~~~~s~~~q----~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~----------~~~~~~~----~~~~ 339 (402)
T TIGR03542 281 CTKFNGASYPVQ----R---AAEAAYAGEGLQPILEAISYYMENARILRKALEAA----------GFKVYGG----EHAP 339 (402)
T ss_pred hhcccCCCHHHH----H---HHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc----------CceecCC----Ccee
Confidence 000001111111 1 1222222111 2233344555566777777763 2444433 1234
Q ss_pred EEEEEeecCCCCCcCHHHH-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHH
Q 037063 475 SLAFNVFDWNGTRIDPALV-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFE 553 (588)
Q Consensus 475 iv~f~~~~~~g~~i~~~~v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~e 553 (588)
.+-+.+++ .++...+ ..++++.||.++.|.... . .+.+++|+|++ .+.+
T Consensus 340 f~~v~l~~----~~~~~~l~~~l~~~~gv~v~pg~~f~----------------~--------~~~~~iRis~~--~~~~ 389 (402)
T TIGR03542 340 YLWVKTPE----GISSWDFFDFLLYQYHVVGTPGSGFG----------------P--------SGEGFVRFSAF--GKRE 389 (402)
T ss_pred EEEEECCC----CCCHHHHHHHHHHhCCEEEeCchhhC----------------C--------CCCCEEEEEec--CCHH
Confidence 44455443 1445454 455667899999874321 0 12239999964 3789
Q ss_pred HHHHHHHHHHHhh
Q 037063 554 DTYRLWAFVSRFL 566 (588)
Q Consensus 554 Dv~~li~~l~~~l 566 (588)
++.+.++.|++.|
T Consensus 390 ~l~~~l~~l~~~~ 402 (402)
T TIGR03542 390 NIVEACERIKEAL 402 (402)
T ss_pred HHHHHHHHHHhhC
Confidence 9999998887653
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-15 Score=152.84 Aligned_cols=342 Identities=14% Similarity=0.103 Sum_probs=230.0
Q ss_pred CCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCch--hHHHHHHHHHHHHHhCCC
Q 037063 118 IGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEE--SELESKIRKRIMDFMNIS 195 (588)
Q Consensus 118 a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~--~~~~~~~r~~ia~~lga~ 195 (588)
|+-...|..|++++...+... |..+.+. +.+||+.+ .+++.-+.++..++||++
T Consensus 33 ASEN~~S~aV~~A~gS~ltnK-----------------------YAEGyPg-kRyYgGce~VD~vE~laierak~LFga~ 88 (413)
T COG0112 33 ASENFTSPAVMEAQGSDLTNK-----------------------YAEGYPG-KRYYGGCEYVDEVEELAIERAKKLFGAE 88 (413)
T ss_pred eccccCCHHHHHHHhhhhhhc-----------------------cccCCCC-ccccCCCeeHHHHHHHHHHHHHHHhCCC
Confidence 666788999999976555322 1122223 34566664 788888999999999996
Q ss_pred CCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchh-HHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHHHHh
Q 037063 196 EDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENE-AAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMKKIV 273 (588)
Q Consensus 196 ~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~-~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i~ 273 (588)
|.=|=--+++.|...+..++ ++|||+|+ .+..|..- ++..-..+.... .+++..+++.+++.||.|++++.+.
T Consensus 89 ---~anVQPhSGs~AN~av~~Al-l~pGDtimgm~l~~GGHltHg~~v~~sG~~-~~~v~Y~vd~et~~IDyD~~~k~a~ 163 (413)
T COG0112 89 ---YANVQPHSGSQANQAVYLAL-LQPGDTIMGLDLSHGGHLTHGSPVNFSGKL-FNVVSYGVDPETGLIDYDEVEKLAK 163 (413)
T ss_pred ---ccccCCCCchHHHHHHHHHH-cCCCCeEecccCCCCCcccCCCCCCcccee-EEeEecccccccCccCHHHHHHHHH
Confidence 33344456677778888888 99999976 22222110 111001222222 5677778887779999999999988
Q ss_pred hhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-----CCCCCCCCCCCCCcEEEeccCc-
Q 037063 274 GKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS-----KDMDTLGLSLFKPDFLICSFYK- 346 (588)
Q Consensus 274 ~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~-----~d~~~l~l~~~~~D~vv~S~~K- 346 (588)
+ .+++|++.-.. ..-..+|++++ ++|.+.|+++++|.||..| .-.+++.. +|++.+|.||
T Consensus 164 e-------~kPK~ii~G~S--aY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~----AdvVTtTTHKT 230 (413)
T COG0112 164 E-------VKPKLIIAGGS--AYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH----ADVVTTTTHKT 230 (413)
T ss_pred H-------hCCCEEEECcc--ccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc----cceEeCCcccC
Confidence 4 67888877532 34577899999 9999999999999998775 22355542 8999999999
Q ss_pred cCCCCCCceEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHH
Q 037063 347 IFGENPSGFGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADA 425 (588)
Q Consensus 347 ~~G~~P~G~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~ 425 (588)
+.| |.| |+++.++ ++.+++....+.| . .|.|...-+ ++...|+....+
T Consensus 231 lrG--PrG-G~Il~~~eel~kkin~aVFPg--~-----------------------qggpl~Hvi---AakaVa~~Eal~ 279 (413)
T COG0112 231 LRG--PRG-GIILTNDEELAKKINSAVFPG--L-----------------------QGGPLMHVI---AAKAVAFKEALE 279 (413)
T ss_pred CCC--CCc-eEEEeccHHHHHHhhhhcCCc--c-----------------------CCChHHHHH---HHHHHHHHHHcC
Confidence 667 876 8888886 6777777655442 1 122333333 676677777777
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEec
Q 037063 426 LGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLS 505 (588)
Q Consensus 426 ~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~ 505 (588)
-+.+...+++...++.|.+.|.+. ++++++-. .....+...+.+. | ++...+.+.|.+.||.+-
T Consensus 280 p~fk~Ya~qVv~NAkaLAe~l~~~----------G~~vvsGg---TdnHl~lVDl~~~-~--~~Gk~ae~~L~~~~It~N 343 (413)
T COG0112 280 PEFKEYAKQVVKNAKALAEALKER----------GFKVVSGG---TDNHLVLVDLRSK-G--LTGKKAEAALERAGITVN 343 (413)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc----------CCeEecCC---ccceEEEEEcccC-C--CCHHHHHHHHHHcCEeec
Confidence 778888999999999999999984 46666532 3456777776632 2 678889999999999863
Q ss_pred cccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC----CHHHHHHHHHHHHHhhhh
Q 037063 506 CGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT----NFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 506 ~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~----t~eDv~~li~~l~~~l~~ 568 (588)
--.. |+-.. +.+-...|||..--.| .++|+..+.+.|.+.|+.
T Consensus 344 KN~i--P~D~~------------------~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 344 KNAI--PFDPE------------------SPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG 390 (413)
T ss_pred cCCC--CCCCC------------------CCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence 2100 11000 0011125777654333 467999999999988875
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-15 Score=163.12 Aligned_cols=303 Identities=13% Similarity=0.087 Sum_probs=172.6
Q ss_pred HHHHHHHHHh----C--CCCCCceEEEecCHHHHHHHHHHhCCCC-----CCCeEEE--cCCCchhHHHHHHHHHHhcC-
Q 037063 183 KIRKRIMDFM----N--ISEDDYTLVFTANQSSAFKLLAESYPFY-----SNPRLLT--VYDHENEAAALMIESSKKRG- 248 (588)
Q Consensus 183 ~~r~~ia~~l----g--a~~~e~~vvft~g~T~al~lv~~s~~~~-----~gd~ll~--~~e~~s~~~~~~~~~a~~~G- 248 (588)
++|+.|++++ | ++++ +|++|+|+++|+.+++..+ .+ +||+|++ ...|+. +. ..+...|
T Consensus 78 ~LR~aia~~~~~~~g~~v~~~--~I~it~Ga~~al~~~~~~l-~~~~~~~~gd~v~i~~~P~y~~-y~----~~~~~~~~ 149 (416)
T PRK09440 78 ELIEALAALLNERYGWNISPQ--NIALTNGSQSAFFYLFNLF-AGRRADGSLKKILFPLAPEYIG-YA----DAGLEEDL 149 (416)
T ss_pred HHHHHHHHHHHHHhCCCCChh--hEEEccChHHHHHHHHHHH-hccccCCCCCeEEEecCCCchh-hH----HHhhccCc
Confidence 5666666665 4 5555 4999999999999999988 53 5888765 334442 21 1122112
Q ss_pred ---CEEEEEeccCC--CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeC
Q 037063 249 ---ARVSSAEFAWP--NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDA 319 (588)
Q Consensus 249 ---~~v~~v~~~~~--~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDa 319 (588)
.....++++.+ ...+++++|+ +. .++++++++.++||||..++.++ | ++|++++++||+|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~d~~~l~--~~--------~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De 219 (416)
T PRK09440 150 FVSYRPNIELLPEGQFKYHVDFEHLH--ID--------EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDN 219 (416)
T ss_pred eeecccccccccccccccCCCHHHcc--cC--------CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeC
Confidence 22223333311 2357888886 34 57899999999999999999766 4 67889999999999
Q ss_pred CCcCCCC-CCCCCCC--CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccc
Q 037063 320 TALGSKD-MDTLGLS--LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDE 396 (588)
Q Consensus 320 a~~~~~d-~~~l~l~--~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~ 396 (588)
+...... ..-.+.. ...--+++.|++|. +.+..++|+++..+++++.+.......
T Consensus 220 ~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~-~~pGlRiG~~i~~~~l~~~~~~~~~~~--------------------- 277 (416)
T PRK09440 220 AYGPPFPGIIFSEATPLWNPNIILCMSLSKL-GLPGVRCGIVIADEEIIEALSNMNGII--------------------- 277 (416)
T ss_pred CccccCCCcchhhcCccccCCeEEEeccccc-CCCcceEEEEeCCHHHHHHHHHHHHHh---------------------
Confidence 9643210 1000110 01123678899995 654567999999888776654322110
Q ss_pred cccccCCCCCccchhhHHHHHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC--eEEEeCCCCCCCc
Q 037063 397 SSQSKFPESSISGVSSKLVECKGLDH--ADALGLILISNRARYLINWLANALMNLHHPHSETGIP--LVRIYGPKVMFDR 472 (588)
Q Consensus 397 ~~f~e~GT~~~~~~~~~~al~~aL~~--l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~--~v~i~~p~~~~~r 472 (588)
..+++.+.+ .++..+|+. +.+.-.+.+.++.++..+.+++.|.+. .+ .+.+..| .
T Consensus 278 ----~~~~s~~~q----~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~--------l~~~~~~~~~p-----~ 336 (416)
T PRK09440 278 ----SLAPGRLGP----AIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRY--------LPDEPCLIHKP-----E 336 (416)
T ss_pred ----ccCCCcHHH----HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cccCCeEEecC-----C
Confidence 011111222 222233321 100000112333344445555555442 11 2444433 2
Q ss_pred ccEEE-EEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCC
Q 037063 473 GPSLA-FNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTN 551 (588)
Q Consensus 473 g~iv~-f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t 551 (588)
++... +.+.+. .++...+.+.+.++||.++.|..+.++.... ...+..+||+|++. +
T Consensus 337 gg~fiw~~~~~~---~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~-----------------~~~~~~~iRis~~~--~ 394 (416)
T PRK09440 337 GAIFLWLWFKDL---PITTEELYQRLKARGVLVVPGHYFFPGLDED-----------------WPHAHQCIRMNYVQ--D 394 (416)
T ss_pred CceEEEEECCCC---CCCHHHHHHHHHHCCEEEechHhhCCCCccc-----------------cCCcCceEEEEecC--C
Confidence 33333 334321 1345667777888999999885432110000 00012389999873 7
Q ss_pred HHHHHHHHHHHHHhhhh
Q 037063 552 FEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 552 ~eDv~~li~~l~~~l~~ 568 (588)
.++++.+++.|+++++.
T Consensus 395 ~~~l~~~i~~l~~~~~~ 411 (416)
T PRK09440 395 DEEIEKGIAILAEEVEK 411 (416)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999988765
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-14 Score=164.95 Aligned_cols=303 Identities=14% Similarity=0.104 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHhCCCCCC-ceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDD-YTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e-~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
+..+.+++++++..|++.+. ..|++|+|+++++.+++.++ .++||+|++....+..+ ...++..|++++.+|.+
T Consensus 734 dlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aL-l~pGD~VLVp~PtY~~Y----~~~a~~~Ga~vv~Vpl~ 808 (1082)
T PLN02672 734 DPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCC-VQEGGTLCFPAGSNGTY----VSAAKFLKANFRRIPTK 808 (1082)
T ss_pred HHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHH-cCCCCEEEEeCCChHHH----HHHHHHcCCEEEEEecc
Confidence 45678999999998987642 36999999999999999999 89999988766544322 34567789999999986
Q ss_pred C-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCC-CCCCccCCHHHH----HHHHHcCcEEEEeCCCc-CCCCCCC-
Q 037063 258 W-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQS-KVTGARYSYMWM----SVAAEKGWHVLLDATAL-GSKDMDT- 329 (588)
Q Consensus 258 ~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~s-n~tG~~~pl~~I----~~a~~~g~~vvvDaa~~-~~~d~~~- 329 (588)
. .+..+|.++|++++.. .++++++++.++ ||||..++.+++ ++|+++|++||+|.+.. +-.+-..
T Consensus 809 ~e~gf~lD~d~Le~al~~-------~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~ 881 (1082)
T PLN02672 809 SSDGFKLTAKTLASTLET-------VKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGW 881 (1082)
T ss_pred cccCCCCCHHHHHHHhcc-------CCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCC
Confidence 3 2467888999999861 134578888886 999999998875 67889999999999853 1111000
Q ss_pred --CCCC----CC----C--CcEEEeccCccCCCCCCceEEEEEeCc-chhcccCCCCCCCceEeeecCCCcccccccccc
Q 037063 330 --LGLS----LF----K--PDFLICSFYKIFGENPSGFGCLFVKKS-SASVLSGSTSSVSTIMGIEPSFSEIIELETLDE 396 (588)
Q Consensus 330 --l~l~----~~----~--~D~vv~S~~K~~G~~P~G~G~L~v~~~-~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~ 396 (588)
..+. .. + .-+++.|+.|.++.+...+|+++..++ +++.+.....-. +
T Consensus 882 s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s-~------------------- 941 (1082)
T PLN02672 882 GGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLS-R------------------- 941 (1082)
T ss_pred cccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhc-C-------------------
Confidence 0110 00 0 125677999988765566999999765 666654321000 0
Q ss_pred cccccCCCCCccchhhHHHHHHHHHHHH-Hh-----CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCC
Q 037063 397 SSQSKFPESSISGVSSKLVECKGLDHAD-AL-----GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMF 470 (588)
Q Consensus 397 ~~f~e~GT~~~~~~~~~~al~~aL~~l~-~~-----G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~ 470 (588)
. .+... .++..++..+. +- .+....+.++..++++.+.|.++ +++++.|
T Consensus 942 -----~--~~~~q----~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~----------Gi~v~~P---- 996 (1082)
T PLN02672 942 -----P--HSTLK----YTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEAC----------GWDVLEP---- 996 (1082)
T ss_pred -----C--CcHHH----HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCeEecC----
Confidence 0 00011 11122222111 00 13455556677778888888874 2444433
Q ss_pred CcccEEEEEee-cC----------C---CCCcCHHHHH-HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCC
Q 037063 471 DRGPSLAFNVF-DW----------N---GTRIDPALVQ-KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNET 535 (588)
Q Consensus 471 ~rg~iv~f~~~-~~----------~---g~~i~~~~v~-~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~ 535 (588)
.|+++.+.-. .. + +..++...+. .++++.||.+.+|..+.
T Consensus 997 -eGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG------------------------ 1051 (1082)
T PLN02672 997 -QGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTG------------------------ 1051 (1082)
T ss_pred -CcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccC------------------------
Confidence 3555554321 10 0 0123455554 55566799999884320
Q ss_pred cCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 536 RSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 536 ~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
.. +++|++++. +.+++++.++.|++|++
T Consensus 1052 ~~--g~~RIsfa~--~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1052 IP--GYCRFSFAL--EDSEFDRALKAIARFKE 1079 (1082)
T ss_pred CC--CeEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 02 289999984 78899999999999875
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.3e-15 Score=157.20 Aligned_cols=334 Identities=9% Similarity=0.074 Sum_probs=206.0
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|||..+. |.-.+.+++++.+.+......+ ... ..+..++
T Consensus 29 dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~---------------------------~~~----~~~~~~~ 77 (400)
T PTZ00125 29 EGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTS---------------------------RAF----YNDVLGL 77 (400)
T ss_pred CCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhccccc---------------------------ccc----cCHHHHH
Confidence 57789998753 3357788888866653211100 000 0346788
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--------C-CCCCeEE-EcCCCchhHHHHHHHHHHhcCC----
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--------F-YSNPRLL-TVYDHENEAAALMIESSKKRGA---- 249 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--------~-~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~---- 249 (588)
+++.++++++.+ .++|++++|+|+..++.... + ..+++|+ ....+|......+ ........
T Consensus 78 ~~~~l~~~~~~~----~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~-~~~~~~~~~~~~ 152 (400)
T PTZ00125 78 AEKYITDLFGYD----KVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGAC-SASTDPKCYNNF 152 (400)
T ss_pred HHHHHHhCCCCC----EEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHH-hhcCCcchhccC
Confidence 999999988762 48999999999887777541 1 1234554 6667776333322 11110000
Q ss_pred -----EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeC
Q 037063 250 -----RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDA 319 (588)
Q Consensus 250 -----~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDa 319 (588)
.+..++. .|+++|++.+.. +++++|++..++|++|.+.| +++| ++|+++|+++|+|.
T Consensus 153 ~~~~~~~~~~~~------~d~~~le~~l~~-------~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~De 219 (400)
T PTZ00125 153 GPFVPGFELVDY------NDVEALEKLLQD-------PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDE 219 (400)
T ss_pred CCCCCCceEeCC------CCHHHHHHHhCC-------CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 1111111 278899988851 57899999999999999998 8899 99999999999999
Q ss_pred CCc-CCCCCC--CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccc
Q 037063 320 TAL-GSKDMD--TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDE 396 (588)
Q Consensus 320 a~~-~~~d~~--~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~ 396 (588)
++. ++..-. ........+|++++| |.++.+..++|++++++++++.+.....+ .+
T Consensus 220 v~~g~g~~G~~~~~~~~~~~pd~~~~s--K~l~~g~~~ig~v~~~~~~~~~~~~~~~~--~t------------------ 277 (400)
T PTZ00125 220 IQTGLGRTGKLLAHDHEGVKPDIVLLG--KALSGGLYPISAVLANDDVMLVIKPGEHG--ST------------------ 277 (400)
T ss_pred cccCCCccchhhHHHhcCCCCCEEEEc--ccccCCCcCcEEEEEcHHHHhhccCCCCC--CC------------------
Confidence 964 321100 111222348988765 97763223689999999887766543211 00
Q ss_pred cccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE
Q 037063 397 SSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL 476 (588)
Q Consensus 397 ~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv 476 (588)
| .++ ++. .++..++|+.+.+.+ +.++.+.+.+++++.|.++... .+.+.... ..|.++
T Consensus 278 --~--~~~-~~~----~~aa~~~l~~i~~~~---~~~~~~~~~~~l~~~l~~l~~~-----~~~~~~~~-----~~g~~~ 335 (400)
T PTZ00125 278 --Y--GGN-PLA----CAVAVEALEVLKEEK---LAENAQRLGEVFRDGLKELLKK-----SPWVKEIR-----GKGLLN 335 (400)
T ss_pred --C--CcC-HHH----HHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHhc-----CCCeEEEe-----cccEEE
Confidence 0 111 111 144456777776533 4566667777777777764110 12222111 245666
Q ss_pred EEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHH
Q 037063 477 AFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTY 556 (588)
Q Consensus 477 ~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~ 556 (588)
.+.+...++ .....+.+.|.++||.+.++. ...||+++++..+.+||+
T Consensus 336 ~v~~~~~~~--~~~~~~~~~l~~~Gv~v~~~~------------------------------~~~lRi~~~~~~~~~~i~ 383 (400)
T PTZ00125 336 AIVFDHSDG--VNAWDLCLKLKENGLLAKPTH------------------------------DNIIRFAPPLVITKEQLD 383 (400)
T ss_pred EEEEccCcc--hHHHHHHHHHHHCCeEEeecC------------------------------CCEEEEECCccCCHHHHH
Confidence 666643211 234556666667899886431 128999999999999999
Q ss_pred HHHHHHHHhhhh
Q 037063 557 RLWAFVSRFLDA 568 (588)
Q Consensus 557 ~li~~l~~~l~~ 568 (588)
++++.|.+++++
T Consensus 384 ~~l~~l~~~l~~ 395 (400)
T PTZ00125 384 QALEIIKKVLKS 395 (400)
T ss_pred HHHHHHHHHHHH
Confidence 999999998865
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-15 Score=148.70 Aligned_cols=304 Identities=16% Similarity=0.152 Sum_probs=198.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEec-CHHHHHHHHHHhCCCCCCCe--EEEcCCCch-hHHHHHHHHHHhcCCE--E
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTA-NQSSAFKLLAESYPFYSNPR--LLTVYDHEN-EAAALMIESSKKRGAR--V 251 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~-g~T~al~lv~~s~~~~~gd~--ll~~~e~~s-~~~~~~~~~a~~~G~~--v 251 (588)
..+++++++.+.++++++ ++|.|.|.+ |+|..+.++..++ +..... +.+ .+.+ .+..| |++.+.. +
T Consensus 49 ~~v~~~a~~~lreLl~iP-d~Y~VlflqGGat~qf~~~p~nL-l~~~~~~yv~~--g~Ws~~a~~e----A~~~~~~~~~ 120 (365)
T COG1932 49 KNVLEEAEKDLRELLNIP-DDYKVLFLQGGATGQFAMAPMNL-LGKRGTDYVDT--GAWSEFAIKE----AKKVGKQPKL 120 (365)
T ss_pred HHHHHHHHHHHHHHhCCC-CCceEEEEcCccHHHHHHHHHhh-hcccCceeEee--eehhHhHHHH----HHHhcccccc
Confidence 678899999999999995 679999986 5588999999888 544332 332 2222 13333 3444432 2
Q ss_pred EEEecc-CCCCcc-CHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCH-HHHHHHHHcCcEEEEeCCCcCCCCCC
Q 037063 252 SSAEFA-WPNLRI-HSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSY-MWMSVAAEKGWHVLLDATALGSKDMD 328 (588)
Q Consensus 252 ~~v~~~-~~~~~i-~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl-~~I~~a~~~g~~vvvDaa~~~~~d~~ 328 (588)
..+... .+.+.+ +++.+. +. ++...|.+++..+.+|+.+|- .++ .. +.++++|+++.+. ..
T Consensus 121 ~~~~~~~~~~~~iP~~~~~~--~~--------~~~ayv~~~~NeTi~Gv~v~~~p~~--~~--~~~~v~D~SS~il--sr 184 (365)
T COG1932 121 IDARIEEAGYGSIPDLSKWD--FS--------DNDAYVHFCWNETISGVEVPELPDI--GS--DGLLVADASSAIL--SR 184 (365)
T ss_pred cccceeccCccCCCChhhcc--cC--------CCccEEEEecCCcccceEccCCCCC--CC--CceEEEecccHHh--cC
Confidence 221111 012222 222211 22 346679999999999999982 122 11 1789999998775 45
Q ss_pred CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 329 TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
++|+++ .|++.++.+|-+| |.|++++++|++++++++..... .+... ... .+ ...|.|.+
T Consensus 185 ~iDvsk--~dviyagaQKnlG--paGltvvIvr~~~l~r~~~~~~P--~if~y------------~~~-~~-~~s~yNTP 244 (365)
T COG1932 185 PIDVSK--YDVIYAGAQKNLG--PAGLTVVIVRPDLLERAESYTLP--SIFDY------------LTH-AD-NGSMYNTP 244 (365)
T ss_pred CCChhH--cceEEEehhhccC--ccceEEEEEcHHHHhcccccCCc--hHhhc------------hhh-hc-cCCccCCc
Confidence 667665 7899999999999 89999999999999888655211 11000 000 12 23344444
Q ss_pred chhhHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc-cEEEEEeecCCCC
Q 037063 409 GVSSKLVECKGLDHADALG-LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG-PSLAFNVFDWNGT 486 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G-~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg-~iv~f~~~~~~g~ 486 (588)
....++.+...++++.+.| ++.+.+|.+.-++.|++.+.+- +..+-.- .+..|+ -.|+|.+.+.+
T Consensus 245 ptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s---------~fy~~~v--~~~~RS~mnV~f~~~~~~-- 311 (365)
T COG1932 245 PTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKS---------DFYRNLV--AKANRSRMNVTFTLVDAE-- 311 (365)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC---------Ccccccc--chhhccceeEEEEcCcHH--
Confidence 4433477778999998875 9999999999999999999873 2222111 113454 57778877533
Q ss_pred CcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 487 RIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 487 ~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
++.. +.+.+++.|...-.|.- ..| .+|+|++-.-..|||+.|+++++.|.
T Consensus 312 -ld~~-fv~eae~~gl~~lkGhr--------------------------~vg--GmRasiynA~~~e~veaL~~fm~~f~ 361 (365)
T COG1932 312 -LDKG-FVAEAEAAGLIYLKGHR--------------------------SVG--GLRASIYNAVPLEDVEALTDFMDWFE 361 (365)
T ss_pred -HHHH-HHHHHHHcCCceecccc--------------------------CCC--ceeeeeecCCCHHHHHHHHHHHHHHH
Confidence 4433 44556666776555511 133 69999999899999999999999986
Q ss_pred hh
Q 037063 567 DA 568 (588)
Q Consensus 567 ~~ 568 (588)
+.
T Consensus 362 ~~ 363 (365)
T COG1932 362 ET 363 (365)
T ss_pred Hh
Confidence 54
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.7e-15 Score=160.41 Aligned_cols=302 Identities=14% Similarity=0.064 Sum_probs=175.0
Q ss_pred HHHHHHHHHHh------CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCE-----
Q 037063 182 SKIRKRIMDFM------NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGAR----- 250 (588)
Q Consensus 182 ~~~r~~ia~~l------ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~----- 250 (588)
.++|+.|++++ ++++++ |++|+|+++++.++. .+ +.+||+|++....+... ...++..|++
T Consensus 79 ~~LR~aia~~~~~~~g~~~~~~~--I~it~Ga~~al~~l~-~~-~~~gd~V~v~~P~Y~~~----~~~~~~~g~~~~~~~ 150 (409)
T PRK07590 79 DFLREKIAENDYQARGCDISADE--IFISDGAKCDTGNIL-DI-FGPDNTIAVTDPVYPVY----VDTNVMAGRTGEANE 150 (409)
T ss_pred HHHHHHHHHHHHHhcCCcCChhh--EEECCCHHHHHHHHH-Hh-cCCCCEEEEeCCCCcch----HHHHHHcCCcccccc
Confidence 36777777765 566654 999999999999875 45 67999977654443312 3455667876
Q ss_pred ------EEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCC
Q 037063 251 ------VSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDAT 320 (588)
Q Consensus 251 ------v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa 320 (588)
++.++++ +++.+..+ +. .+++++|+++.++||||..++.+++ ++|+++|+++|+|.+
T Consensus 151 ~~~~~~~~~v~~~-~~~~~~~d-----~~-------~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~ 217 (409)
T PRK07590 151 DGRYSGIVYLPCT-AENNFVPE-----LP-------EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAA 217 (409)
T ss_pred cccccceeEeecc-cccCCccc-----Cc-------ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEcc
Confidence 8888876 22222221 11 1578999999999999999998874 668899999999997
Q ss_pred Cc--CC--CCCCCC-CCCCC-CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 321 AL--GS--KDMDTL-GLSLF-KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 321 ~~--~~--~d~~~l-~l~~~-~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
.. .. ....++ .+... ..-+++.||.|.+|.+..++|++++.+++++.+.....- .... .+...
T Consensus 218 Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~~li~~~~~~~~~--~~~~---------~~~~~ 286 (409)
T PRK07590 218 YEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPKELKGKTSDGEGV--SLNS---------LWNRR 286 (409)
T ss_pred chhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcCHHHhhhccccchh--hhHH---------HHHHH
Confidence 32 11 001111 11111 123667899999986466799999988776532110000 0000 00000
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDH-ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG 473 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~-l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg 473 (588)
. .....+.+.+.+ .++..+++. .... ++++.++.++.++++.+.|.++ +++++.| ..+
T Consensus 287 ~--~~~~~~~s~~~q----~a~~~~l~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~----------~~~~~~~----~g~ 345 (409)
T PRK07590 287 Q--STKFNGVSYIVQ----RAAEAVYSPEGKAQ-IKELIDYYMENAKIIREGLESA----------GFEVYGG----VNA 345 (409)
T ss_pred H--hhcccCcCHHHH----HHHHHHhcCCcHHH-HHHHHHHHHHHHHHHHHHHHhc----------CCceecC----Ccc
Confidence 0 000011111222 222233321 0111 3445566666677788888763 2444433 123
Q ss_pred cEEEEEeecCCCCCcCHHHH-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCH
Q 037063 474 PSLAFNVFDWNGTRIDPALV-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNF 552 (588)
Q Consensus 474 ~iv~f~~~~~~g~~i~~~~v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~ 552 (588)
..+-+.+.+. ++...+ .+++++.||.+.+|..+. . .+.+++|+++ ..+.
T Consensus 346 ~f~wi~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~----------------~--------~~~~~iRi~~--~~~~ 395 (409)
T PRK07590 346 PYIWVKTPDG----MSSWDFFDKLLQEANVVGTPGSGFG----------------P--------SGEGYFRLSA--FGSR 395 (409)
T ss_pred eEEEEECCCC----CCHHHHHHHHHHHCCEEEeChhHhC----------------C--------CCCCEEEEEc--cCCH
Confidence 3444444431 344444 456678899998874321 0 2223899995 4578
Q ss_pred HHHHHHHHHHHHhh
Q 037063 553 EDTYRLWAFVSRFL 566 (588)
Q Consensus 553 eDv~~li~~l~~~l 566 (588)
++++..++.|++.|
T Consensus 396 ~~l~~~l~rl~~~~ 409 (409)
T PRK07590 396 ENVLEAMERIKKAL 409 (409)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999887653
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.9e-15 Score=152.57 Aligned_cols=304 Identities=16% Similarity=0.153 Sum_probs=193.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCC-CchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYD-HENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e-~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+.+.++++.+-|.. ..+.++++..|+..+..++ +++||+|+...+ |.. .+..+..+.++.|+++.+++.
T Consensus 62 nPT~~~lE~~~a~LEg~~----~~~afsSGmaAI~~~~l~l-l~~GD~vl~~~~~YG~-t~~~~~~~l~~~gi~~~~~d~ 135 (396)
T COG0626 62 NPTRDALEEALAELEGGE----DAFAFSSGMAAISTALLAL-LKAGDHVLLPDDLYGG-TYRLFEKILQKFGVEVTFVDP 135 (396)
T ss_pred CccHHHHHHHHHHhhCCC----cEEEecCcHHHHHHHHHHh-cCCCCEEEecCCccch-HHHHHHHHHHhcCeEEEEECC
Confidence 334557888888888773 2777788889999988899 999999776555 544 555667778889999998875
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
. +.+++++++.. ++|++|.+..++||+-.+.|+..| ++|+++|+.++||.+-+.|....+|.+.
T Consensus 136 ~------~~~~~~~~~~~-------~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~G-- 200 (396)
T COG0626 136 G------DDEALEAAIKE-------PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQRPLELG-- 200 (396)
T ss_pred C------ChHHHHHHhcc-------cCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccccChhhcC--
Confidence 3 44566766651 589999999999999999999999 9999999999999998888555666532
Q ss_pred CCcEEEeccCccCCCCCCc-eEEEEEeCcch-hcccCCC---CCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 336 KPDFLICSFYKIFGENPSG-FGCLFVKKSSA-SVLSGST---SSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G-~G~L~v~~~~~-~~l~~~~---~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
+|+++-|..|.+|.+--= .|.++.+++.+ +.+.... .| +..+ ++-+
T Consensus 201 -aDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G--~~l~-------------------------p~dA- 251 (396)
T COG0626 201 -ADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTG--AVLS-------------------------PFDA- 251 (396)
T ss_pred -CCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcC--CCCC-------------------------HHHH-
Confidence 999999999988721111 45444455443 3331111 11 1110 1111
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCC------------CCCcccEEEE
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKV------------MFDRGPSLAF 478 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~------------~~~rg~iv~f 478 (588)
.-+.++|+-+.-. |++..+....+++||.+ || ...+||-|.- ....|++++|
T Consensus 252 ---~l~lRGlkTL~~R-m~~~~~nA~~IA~~L~~------~p------~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf 315 (396)
T COG0626 252 ---WLLLRGLRTLALR-MERHNENALKIAEFLAD------HP------KVKKVYYPGLPSHPGHELAKRQMTGYGGLFSF 315 (396)
T ss_pred ---HHHHhccchHHHH-HHHHHHHHHHHHHHHhc------CC------CeEEEECCCCCCCCcHHHHHHhcCCCceEEEE
Confidence 1233555544322 45555555556665554 21 2335666531 1126789999
Q ss_pred EeecCCCCCcCHHHHHHHHHhCCcEe---cccccc----Cccc-ccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCC
Q 037063 479 NVFDWNGTRIDPALVQKLADRHNISL---SCGFLQ----NIFF-SGEYEQERVRVLETRSGTNETRSGV--SVVTAALGC 548 (588)
Q Consensus 479 ~~~~~~g~~i~~~~v~~~l~~~gI~v---~~G~~c----~~~~-~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~ 548 (588)
.+.+ .+.+.++++.-.+.. +-|..- +|.. ...... ..... ..|+ +.||+|.|.
T Consensus 316 ~l~~-------~~~~~~f~~~L~l~~~a~SlGgveSLi~~pa~~th~~~~---~~~r~-------~~Gi~~~LvRlSVGl 378 (396)
T COG0626 316 ELKN-------EEAAKKFLDSLKLFKLAESLGGVESLISHPATMTHASIP---LEERA-------KAGITDGLVRLSVGL 378 (396)
T ss_pred EeCC-------hHHHHHHHHhCCccEEeccCCCcccccccccccCcccCC---HhHHH-------hcCCCCCeEEEEecC
Confidence 9986 155667776655432 333211 1100 000000 00001 1333 399999997
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 037063 549 LTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 549 ~~t~eDv~~li~~l~~~l~~ 568 (588)
||++.|++-|++.|+.
T Consensus 379 ----Ed~eDLi~Dl~~Al~~ 394 (396)
T COG0626 379 ----EDVEDLIADLEQALAK 394 (396)
T ss_pred ----CCHHHHHHHHHHHHHh
Confidence 8888899888887764
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-14 Score=144.99 Aligned_cols=311 Identities=14% Similarity=0.056 Sum_probs=202.7
Q ss_pred HHHHHHHHHHhCCCCC----CceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 182 SKIRKRIMDFMNISED----DYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~----e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
..+|+.||++++-+.+ ..+|++|+|+++|+.++++++ -+||.+||.+...+. .+ ...|...|.+|+..++-
T Consensus 106 ~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~L-A~p~aNILlPrPGfp-~Y---~~~a~~~~lEVR~ydlL 180 (447)
T KOG0259|consen 106 LPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSL-ANPGANILLPRPGFP-LY---DTRAIYSGLEVRYYDLL 180 (447)
T ss_pred HHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHh-cCCCCceecCCCCCc-hH---HHhhhhcCceeEeeccc
Confidence 4899999999774321 134999999999999999999 799999887766543 22 34567789999999874
Q ss_pred -CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCC--CcC--C---C
Q 037063 258 -WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYM---WM-SVAAEKGWHVLLDAT--ALG--S---K 325 (588)
Q Consensus 258 -~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa--~~~--~---~ 325 (588)
..+++||.+.++.+++ ++|..+++.+++||+|..++.+ +| +.|+++|+.||-|.. +.+ + +
T Consensus 181 Pe~~weIDL~~veal~D--------ENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfv 252 (447)
T KOG0259|consen 181 PEKDWEIDLDGVEALAD--------ENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFV 252 (447)
T ss_pred CcccceechHHHHHhhc--------cCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCcc
Confidence 2567899999999999 8999999999999999999855 46 789999999999987 222 1 1
Q ss_pred CCCCCCCCCCCCcEEEeccCc-cCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 326 DMDTLGLSLFKPDFLICSFYK-IFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 326 d~~~l~l~~~~~D~vv~S~~K-~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
.|..+ +..-|-+...+..| |+=. .-++|++.+.+..- .++....- .+.... ++. -.|-
T Consensus 253 pmg~f--ssiVPVitlggisKrW~VP-GWRlGWi~~hD~~g-vf~~~~~~-q~~~~~---------~~~-------~~~p 311 (447)
T KOG0259|consen 253 PMGKF--SSIVPVITLGGISKRWIVP-GWRLGWIALHDPRG-VFRDTKVV-QGIKNF---------LDI-------IPGP 311 (447)
T ss_pred chhhc--cccCceEeecccccccccC-CceeeeEEEecccc-cccchHHH-HHHHHH---------Hhc-------cCCc
Confidence 13333 22225566678899 7652 45799999887431 11111100 011000 000 1111
Q ss_pred CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE-EEe--e
Q 037063 405 SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA-FNV--F 481 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~-f~~--~ 481 (588)
..+.+ +|+..-|+--.+.=.+....-++..++..++.|++ +|.+..+-. +.|.+.. +.+ .
T Consensus 312 ~TiiQ----~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~---------IP~l~cp~k----Peg~mylmv~l~~s 374 (447)
T KOG0259|consen 312 ATIIQ----GALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKD---------IPCLTCPVK----PEGCMYLMVKLNLS 374 (447)
T ss_pred cHhHH----HHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhc---------CCCcccCcC----CCcceEEEeccchh
Confidence 11111 22222222221111455666667778888999998 466653221 2233222 221 1
Q ss_pred cCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCcc-EEEEecCCCCCHHHHHHHHH
Q 037063 482 DWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVS-VVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 482 ~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~-~vRvSlg~~~t~eDv~~li~ 560 (588)
--..-.-+.+..++++++..+.+-+|.. .|.+ ++|++++. ..+.++...+
T Consensus 375 ~~~~~~dD~dFc~kL~~Eesv~~LPG~a---------------------------f~~~nw~Ri~i~~--~~~~leea~~ 425 (447)
T KOG0259|consen 375 LFPDIEDDVDFCQKLAREESVICLPGQA---------------------------FGLKNWLRIVITV--EEEMLEEAFS 425 (447)
T ss_pred hhccccccHHHHHHHhhhcceEEecccc---------------------------ccCCCeEEEEEcc--ChHHHHHHHH
Confidence 0000112456688999999999888732 3333 99999775 6789999999
Q ss_pred HHHHhhhhhhcc
Q 037063 561 FVSRFLDADFVE 572 (588)
Q Consensus 561 ~l~~~l~~~~~~ 572 (588)
.|+.|.+..+.+
T Consensus 426 Rik~Fc~RH~~~ 437 (447)
T KOG0259|consen 426 RIKEFCDRHSKE 437 (447)
T ss_pred HHHHHHHhhhhc
Confidence 999999998844
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-14 Score=153.92 Aligned_cols=151 Identities=14% Similarity=0.072 Sum_probs=108.9
Q ss_pred eEEEecCHHHHHHHHHHh-----CCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCC-C-----CccCHHHH
Q 037063 200 TLVFTANQSSAFKLLAES-----YPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWP-N-----LRIHSGKL 268 (588)
Q Consensus 200 ~vvft~g~T~al~lv~~s-----~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~-~-----~~i~~e~l 268 (588)
+|++|.|+++|+.+++.+ + +.|||+|++....+..+. .+..+ ...|++++.++.+.. . +.++.+++
T Consensus 157 ~V~it~Gat~al~~~~~~l~~~~l-l~pGD~Vlv~~P~y~~y~-~~~~l-~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l 233 (521)
T TIGR03801 157 DLFAVEGGTAAMCYIFDSLKANEL-LKKGDKIALMTPIFTPYL-EIPEL-PRYDFEVVRIKADEMTEDGTHTWQYPDKEL 233 (521)
T ss_pred eEEEeCCHHHHHHHHHHHHhHhhc-CCCCCEEEEeCCCcHHHH-HHHHH-hcCCcEEEEeecccccccccccCCCCHHHH
Confidence 699999999999998877 5 789999876655543222 21122 234788888887522 1 56899999
Q ss_pred HHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHc--CcEEEEeCCCc--CCCCCCCCCCCCCC-CcE
Q 037063 269 MKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEK--GWHVLLDATAL--GSKDMDTLGLSLFK-PDF 339 (588)
Q Consensus 269 ~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~--g~~vvvDaa~~--~~~d~~~l~l~~~~-~D~ 339 (588)
+++++ +++++|++..++||||..++.++ | ++|+++ +++||+|.+-. .. +..++ ++..+ --+
T Consensus 234 ~~~~~--------~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~-~~~sl-~~~~~~~vI 303 (521)
T TIGR03801 234 EKLRD--------PSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD-DFRSL-FAELPYNTI 303 (521)
T ss_pred HHhcC--------CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc-cccch-hhhCCCCEE
Confidence 98776 78999999999999999999665 4 668876 99999999832 22 11111 11111 247
Q ss_pred EEeccCccCCCCCCceEEEEEeCc
Q 037063 340 LICSFYKIFGENPSGFGCLFVKKS 363 (588)
Q Consensus 340 vv~S~~K~~G~~P~G~G~L~v~~~ 363 (588)
++.|+.|.||++...+|++++.++
T Consensus 304 ~v~SfSK~fg~~G~RlG~i~~~~~ 327 (521)
T TIGR03801 304 GVYSFSKYFGATGWRLGTIALHKD 327 (521)
T ss_pred EEEcchhhccCchhhhhhhhcCch
Confidence 888999999865566999999865
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-13 Score=141.39 Aligned_cols=149 Identities=13% Similarity=0.142 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNL 261 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~ 261 (588)
..+|+.+++++|. + |++|+|+++|+.+++..+ .+||+|++....+. .....++..|++++.++
T Consensus 43 ~~l~~~ia~~~~~---~--I~vt~G~~~al~~~~~~~--~~gd~vlv~~P~y~----~~~~~~~~~g~~~~~~~------ 105 (311)
T PRK08354 43 EWLEEEFSKLFGE---P--IVITAGITEALYLIGILA--LRDRKVIIPRHTYG----EYERVARFFAARIIKGP------ 105 (311)
T ss_pred HHHHHHHHHHHCC---C--EEECCCHHHHHHHHHHhh--CCCCeEEEeCCCcH----HHHHHHHHcCCEEeecC------
Confidence 4688999999984 3 999999999999888654 48999876655443 22456677899997653
Q ss_pred ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcC-CCCCCCCCCCCCC
Q 037063 262 RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALG-SKDMDTLGLSLFK 336 (588)
Q Consensus 262 ~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~-~~d~~~l~l~~~~ 336 (588)
++.+.|++.++ ++++++++.++||||..++.+++ +.|+++|+++|+|.+-.- ..+-.... ..
T Consensus 106 -~d~~~l~~~~~---------~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~---~~ 172 (311)
T PRK08354 106 -NDPEKLEELVE---------RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPE---GE 172 (311)
T ss_pred -CCHHHHHHhhc---------CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccccC---CC
Confidence 46778877765 36789999999999999998775 567889999999998422 11111111 22
Q ss_pred CcEEEeccCccCCCCCCceEEEEE
Q 037063 337 PDFLICSFYKIFGENPSGFGCLFV 360 (588)
Q Consensus 337 ~D~vv~S~~K~~G~~P~G~G~L~v 360 (588)
--+++.|+.|.||++..++|+++.
T Consensus 173 ~vi~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 173 NIIKLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred cEEEEeccHhhcCCccceeeeeee
Confidence 457889999999864566899987
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-14 Score=162.06 Aligned_cols=305 Identities=16% Similarity=0.114 Sum_probs=206.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCC--CeEE-EcCCCchhHHHHHHHHHHhcCCEEEEE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSN--PRLL-TVYDHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~g--d~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
-+.+-+.+..|+++.|.+..+ .-+..++|++.++++.++..+.+ ++|+ ....||. ...-++..++..|.+|+.+
T Consensus 108 Le~l~e~Qt~i~eLtGm~~aN--aSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~-~~~v~~t~a~~~g~~v~~~ 184 (939)
T TIGR00461 108 LEALLNFQTVVSDLTGLPVAN--ASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQ-TKSVLHTRAKPFGIEVIVV 184 (939)
T ss_pred HHHHHHHHHHHHHHHCCChhh--hhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcc-hHHHHHHHHHhcCcEEEEE
Confidence 566778999999999998655 77888999988888877644333 5665 5666766 3434466778899999987
Q ss_pred eccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC---CCCCCC
Q 037063 255 EFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS---KDMDTL 330 (588)
Q Consensus 255 ~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~---~d~~~l 330 (588)
+. ++|+..+ ++..++ ....|..|.+.++++| +++|++|.++++++-...- +...++
T Consensus 185 ~~---------~~l~~~~----------~~~~v~-~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~ 244 (939)
T TIGR00461 185 DC---------SDIKKAV----------DVFGCL-LQYPATDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHY 244 (939)
T ss_pred cH---------HHHhhcC----------CEEEEE-EECCCCCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHc
Confidence 43 3444332 244443 4455789999999999 9999999999997653331 234455
Q ss_pred CCCCCCCcEEEeccCccC---CCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcc-ccccccc-ccccccCCCC
Q 037063 331 GLSLFKPDFLICSFYKIF---GENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEI-IELETLD-ESSQSKFPES 405 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~~---G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~-~~~~~~~-~~~f~e~GT~ 405 (588)
| +|+++.+.++|- |++..+.|++.+++++...++....| .+.+. ...+.+ ..++.+. +-|. |-+|.
T Consensus 245 G-----aDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG--~s~D~-~G~~~~~l~LqtReqhIrR-ekAtS 315 (939)
T TIGR00461 245 G-----ADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVG--VSKDA-LGNTALRLALQTREQHIRR-DKATS 315 (939)
T ss_pred C-----CcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCcee--EEecC-CCCccceeecccccccccc-cccCc
Confidence 5 999988888731 12234599999999988888776655 12111 000000 1122222 1255 78899
Q ss_pred CccchhhHHHHHHH--HHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecC
Q 037063 406 SISGVSSKLVECKG--LDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDW 483 (588)
Q Consensus 406 ~~~~~~~~~al~~a--L~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~ 483 (588)
|+.....+.++.++ +.++-..|+.+|.+|+..++.+|.++|.++ ++++..+. --..+.+.+..
T Consensus 316 NICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~----------G~~~~~~~----fF~~~~v~~~~- 380 (939)
T TIGR00461 316 NICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEND----------PHELINKT----WFDTLTVKVGN- 380 (939)
T ss_pred chhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC----------CCcccCCC----ccceEEEEeCC-
Confidence 98876444444445 344555579999999999999999999884 45554431 11234444422
Q ss_pred CCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 484 NGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 484 ~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
.+.+.+.+.|.++||.++.. ..+ .|++|++-++|.+||+.|++.+.
T Consensus 381 ----~~~~~i~~~~~~~gi~l~~~----------------------------~~~--~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 381 ----GISSELLKAAEEFNINLRAV----------------------------DTT--TVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred ----CCHHHHHHHHHHCCCeeeec----------------------------CCC--EEEEEeecCCCHHHHHHHHHHhc
Confidence 23677878888899997642 012 79999999999999999999985
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.7e-15 Score=154.95 Aligned_cols=301 Identities=14% Similarity=0.080 Sum_probs=181.0
Q ss_pred CCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCch--hHHHHHHHHHHHHHhCCC
Q 037063 118 IGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEE--SELESKIRKRIMDFMNIS 195 (588)
Q Consensus 118 a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~--~~~~~~~r~~ia~~lga~ 195 (588)
++-...|+.+++.+...+.... -.+.+. ...|++.+ .+++.-+.++++++||++
T Consensus 27 aSEN~~Sp~v~~al~S~l~nky-----------------------aeg~pg-~ryy~G~~~id~iE~la~~ra~~lF~~~ 82 (399)
T PF00464_consen 27 ASENYMSPAVREALGSDLTNKY-----------------------AEGYPG-KRYYGGCEYIDEIEELAIERAKELFGAE 82 (399)
T ss_dssp TT-----HHHHHHHTSGGGGS------------------------TTEETT-EESSSSTHHHHHHHHHHHHHHHHHHT-S
T ss_pred CcccccCHHHHHHhCCcceeec-----------------------cccCCC-cccccCcchhhHHHHHHHHHHHHHhCCC
Confidence 6677888899888754442211 111222 22344432 677778999999999998
Q ss_pred CCCce-EEEecCHHHHHHHHHHhCCCCCCCeEEE-cC---CCchhHHHHHHHH----HHhcCCEEEEEeccCCCCccCHH
Q 037063 196 EDDYT-LVFTANQSSAFKLLAESYPFYSNPRLLT-VY---DHENEAAALMIES----SKKRGARVSSAEFAWPNLRIHSG 266 (588)
Q Consensus 196 ~~e~~-vvft~g~T~al~lv~~s~~~~~gd~ll~-~~---e~~s~~~~~~~~~----a~~~G~~v~~v~~~~~~~~i~~e 266 (588)
++++- -|=.-|++.|...+..++ ++|||+|+. +. .|-+ +...... +.....++...++++.++.||.+
T Consensus 83 ~~~w~anvqp~SGs~An~av~~aL-l~pGD~Im~l~l~~GGHls--hg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d 159 (399)
T PF00464_consen 83 PKEWYANVQPHSGSQANLAVYMAL-LKPGDTIMGLSLPHGGHLS--HGSSVNFKKISASGLYFESVPYPVDPDTGLIDYD 159 (399)
T ss_dssp TTTEEEE---SSHHHHHHHHHHHH-T-TT-EEEEEEGGGT--GG--GT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HH
T ss_pred cccceEEeecCCchHHHHHHHHHH-HhhcCcEEecChhhccccc--ccccccccccccccceEEEEeeeeecCCCeECHH
Confidence 76643 344458889999999999 899999763 22 2221 1111111 11234678888888788999999
Q ss_pred HHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-----CCCCCCCCCCCCCcEE
Q 037063 267 KLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS-----KDMDTLGLSLFKPDFL 340 (588)
Q Consensus 267 ~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~-----~d~~~l~l~~~~~D~v 340 (588)
++++.+.+ .+++||++...+ .-..+|++++ ++|++.|+++++|++|.++ .-..++. .+|++
T Consensus 160 ~l~~~a~~-------~kPklIi~G~S~--y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~----~ADvv 226 (399)
T PF00464_consen 160 ELEKLAKE-------HKPKLIICGASS--YPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFP----YADVV 226 (399)
T ss_dssp HHHHHHHH-------H--SEEEEE-SS--TSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCC----TSSEE
T ss_pred HHHHHHhh-------cCCCEEEECchh--ccCccCHHHHHHHHHhcCcEEEecccccccceehheecCccc----cceEE
Confidence 99999984 578999998655 4466889999 9999999999999998775 2235554 28999
Q ss_pred EeccCc-cCCCCCCceEEEEEeCcc--------------hhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 341 ICSFYK-IFGENPSGFGCLFVKKSS--------------ASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 341 v~S~~K-~~G~~P~G~G~L~v~~~~--------------~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
.+|.|| +.| |.| |+++.++.. .+++....+.+ -.|.+
T Consensus 227 t~sThKtl~G--Prg-giI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~-------------------------~qg~~ 278 (399)
T PF00464_consen 227 TGSTHKTLRG--PRG-GIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPG-------------------------LQGGP 278 (399)
T ss_dssp EEESSGGG-S--SS--EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTT-------------------------T-SS-
T ss_pred Eeeccccccc--cCc-eEEEEcCCccccCCcccccHHHHHHHhccccCCC-------------------------cccCc
Confidence 999999 566 876 888888432 22222111110 12233
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCC
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNG 485 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g 485 (588)
.... ++++..+|..+.+.......+++...++.|.+.|.+. +++|.+.. .....|.+.+....
T Consensus 279 h~~~---iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~----------G~~v~~gg---Td~H~vlvd~~~~~- 341 (399)
T PF00464_consen 279 HMHR---IAALAVALKEALSPEFKEYAKQVVKNAKALAEALQER----------GFKVVTGG---TDNHQVLVDLRSFG- 341 (399)
T ss_dssp -HHH---HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----------T-EEGGGS----SSSEEEEEGGGGT-
T ss_pred chhH---HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhC----------CcEEEECC---CCCCeEEEEecccc-
Confidence 3333 3677777776544335778888889999999999884 57776532 34577777775422
Q ss_pred CCcCHHHHHHHHHhCCcEec
Q 037063 486 TRIDPALVQKLADRHNISLS 505 (588)
Q Consensus 486 ~~i~~~~v~~~l~~~gI~v~ 505 (588)
++...+.+.|++.||.+-
T Consensus 342 --~~g~~a~~~Le~~gI~vn 359 (399)
T PF00464_consen 342 --IDGKEAEKALEEAGIIVN 359 (399)
T ss_dssp --S-HHHHHHHHHHTTEE-E
T ss_pred --cchHHHHHHHHhcCeeec
Confidence 678889999999999874
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-14 Score=150.16 Aligned_cols=317 Identities=14% Similarity=0.077 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCC-
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWP- 259 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~- 259 (588)
..++|+.|++++|.+ .+++|.|+|+|+.+++.++ .+|||+|+. ..|.. .. .......|++++.++++..
T Consensus 55 ~~~Leeaia~~~g~~----~vv~t~~Gt~Al~la~~al-~~pGD~V~~-~~~f~-~~---~~~i~~~Ga~pv~v~i~~~~ 124 (431)
T cd00617 55 FYDLEDAVQDLFGFK----HIIPTHQGRGAENILFSIL-LKPGRTVPS-NMHFD-TT---RGHIEANGAVPVDLVIDEAH 124 (431)
T ss_pred HHHHHHHHHHHHCCC----eEEEcCCHHHHHHHHHHHh-CCCCCEEcc-CCccc-ch---HHHHHhCCCEeEEEeccccc
Confidence 358999999999984 3999999999999999998 899998753 33332 11 2233567999999998632
Q ss_pred --------CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCC-CccCCHHH---H-HHHHHcCcEEEEeCCCcCC--
Q 037063 260 --------NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVT-GARYSYMW---M-SVAAEKGWHVLLDATALGS-- 324 (588)
Q Consensus 260 --------~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~t-G~~~pl~~---I-~~a~~~g~~vvvDaa~~~~-- 324 (588)
.+.+|+++|+++|++ ....++++|+++.++|++ |..++++. | ++|+++|++||.|++++..
T Consensus 125 ~~~~~~pf~gniD~e~Le~~I~~----~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na 200 (431)
T cd00617 125 DAQELIPFKGNIDVAKLEKLIDE----VGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENA 200 (431)
T ss_pred ccccccCCCCCcCHHHHHHHhCc----ccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhh
Confidence 245999999999982 112458999999999998 99998764 5 8899999999999996541
Q ss_pred ---------CCCCCCC---CC-CCCCcEEEeccCccCCCCCCceEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccc
Q 037063 325 ---------KDMDTLG---LS-LFKPDFLICSFYKIFGENPSGFGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIE 390 (588)
Q Consensus 325 ---------~d~~~l~---l~-~~~~D~vv~S~~K~~G~~P~G~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~ 390 (588)
..-.++. .. ..-.|.+.+|++|-++. |. .|+++.++ +++++++.......+
T Consensus 201 ~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~-~~-GG~i~~~d~~l~~~~~~~~~~~~~------------- 265 (431)
T cd00617 201 YFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLV-NI-GGFLALRDDELYEEARQRVVLYEG------------- 265 (431)
T ss_pred hhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCC-cc-ceEEEeCcHHHHHHHHHhccccCC-------------
Confidence 0001110 00 01279999999995553 54 36888887 477766532110000
Q ss_pred cccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCC
Q 037063 391 LETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMF 470 (588)
Q Consensus 391 ~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~ 470 (588)
|-..|..+... ++++..||+.... .+.+.+++. .+++|.+.|.+. |+ .+..|
T Consensus 266 --------~~~~gG~~~r~---~~A~A~gL~e~~~--~~~l~~~~~-~r~~l~~~L~~~-------G~---~v~~P---- 317 (431)
T cd00617 266 --------FVTYGGMAGRD---MEALAQGLREAVE--EDYLRHRVE-QVRYLGDRLDEA-------GV---PIVEP---- 317 (431)
T ss_pred --------ccccccccHHH---HHHHHHHHHhccc--HHHHHHHHH-HHHHHHHHHHHC-------CC---CccCC----
Confidence 00112222222 2444446654211 234444444 348888888875 33 34333
Q ss_pred CcccEEEEEeecC----CCCCcCHHH-HHHHHHhCCcEe-ccccccCcccccchHHHHHHHHhhhcCCCCC-cCCccEEE
Q 037063 471 DRGPSLAFNVFDW----NGTRIDPAL-VQKLADRHNISL-SCGFLQNIFFSGEYEQERVRVLETRSGTNET-RSGVSVVT 543 (588)
Q Consensus 471 ~rg~iv~f~~~~~----~g~~i~~~~-v~~~l~~~gI~v-~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~-~~g~~~vR 543 (588)
..+..+-+.+... .++..+... ..+++.+.||.+ -.|.+..+...+. +.. ......||
T Consensus 318 ~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~---------------~~~~~~~~~~~r 382 (431)
T cd00617 318 AGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNT---------------GENKYPELELVR 382 (431)
T ss_pred CcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCC---------------CcccCCccceeE
Confidence 2233444444321 111123433 458889999984 4454322110000 000 01124899
Q ss_pred EecC-CCCCHHHHHHHHHHHHHhhhhh
Q 037063 544 AALG-CLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 544 vSlg-~~~t~eDv~~li~~l~~~l~~~ 569 (588)
+.+. ..-|.++++.+++.|.+.++.-
T Consensus 383 l~~prr~~t~~~~~~~~~~~~~~~~~~ 409 (431)
T cd00617 383 LAIPRRVYTQDHMDYVAAAVIALYERR 409 (431)
T ss_pred EeccccccCHHHHHHHHHHHHHHHhhH
Confidence 9985 2347899999999999987664
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-14 Score=153.54 Aligned_cols=290 Identities=12% Similarity=0.083 Sum_probs=181.5
Q ss_pred HHHHHHHHHhC------CCCCCceEE--EecCHHHHHHHHHH---hCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEE
Q 037063 183 KIRKRIMDFMN------ISEDDYTLV--FTANQSSAFKLLAE---SYPFYSNPRLLTVYDHENEAAALMIESSKKRGARV 251 (588)
Q Consensus 183 ~~r~~ia~~lg------a~~~e~~vv--ft~g~T~al~lv~~---s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v 251 (588)
++|+.|++++. ++++ +|+ .|.|+++|+.++.. .+ +++||+|++....+. .....++..|+++
T Consensus 76 ~lR~aia~~~~~~~~~~~~~~--~v~~~~t~G~~~al~~~~~~l~~~-~~~Gd~Vlv~~P~y~----~~~~~~~~~G~~~ 148 (404)
T PTZ00376 76 SFIEAAQKLLFGEASYALAEK--RIATVQALSGTGALRLGFEFLKRF-LPAGTTVYVSNPTWP----NHVNIFKSAGLNV 148 (404)
T ss_pred HHHHHHHHHhcCCCccccccC--eEEEeeccCcchHHHHHHHHHHHh-cCCCCEEEEcCCCch----hHHHHHHHcCCce
Confidence 77888888652 3444 477 48999999988764 56 789999876665543 2245667889999
Q ss_pred EEEeccC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCC--cCC
Q 037063 252 SSAEFAW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATA--LGS 324 (588)
Q Consensus 252 ~~v~~~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~--~~~ 324 (588)
+.++... .+..+|.+.+++.+.+ . .+++++++++.++||||..++.+++ ++|+++|+++|+|.+- +..
T Consensus 149 ~~v~l~~~~~~~~d~~~l~~~~~~----~-~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~ 223 (404)
T PTZ00376 149 KEYRYYDPKTKGLDFDGMLEDLRT----A-PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFAS 223 (404)
T ss_pred eeccccCcccCCcCHHHHHHHHHh----C-CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccC
Confidence 9999832 3467899999998861 1 1457889999999999999998874 6788999999999982 221
Q ss_pred CC----CCCC-CCCCCC-CcEEEeccCccCCCCCCceEEEE---EeCcchhccc----CCCCCCCceEeeecCCCccccc
Q 037063 325 KD----MDTL-GLSLFK-PDFLICSFYKIFGENPSGFGCLF---VKKSSASVLS----GSTSSVSTIMGIEPSFSEIIEL 391 (588)
Q Consensus 325 ~d----~~~l-~l~~~~-~D~vv~S~~K~~G~~P~G~G~L~---v~~~~~~~l~----~~~~g~~g~v~~~~~~~~~~~~ 391 (588)
-. ...+ .+.... --+++.||.|.||.+..++|+++ .+++.++.+. ......
T Consensus 224 ~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~---------------- 287 (404)
T PTZ00376 224 GDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPM---------------- 287 (404)
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhh----------------
Confidence 00 0000 111111 23788899999995456799984 3444333221 111000
Q ss_pred ccccccccccCCCCCccchhhHHHHHHHHHHH---HHh--CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC-eEEEeC
Q 037063 392 ETLDESSQSKFPESSISGVSSKLVECKGLDHA---DAL--GLILISNRARYLINWLANALMNLHHPHSETGIP-LVRIYG 465 (588)
Q Consensus 392 ~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l---~~~--G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~-~v~i~~ 465 (588)
..+.+.+.+ .++..+|+.- +.. -+..+.++.++.++++.+.|.++ +.+ .+.++.
T Consensus 288 ---------~~~~~~~~q----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-------~~~~~~~~~~ 347 (404)
T PTZ00376 288 ---------YSSPPIHGA----RIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKAL-------GSPGDWEHII 347 (404)
T ss_pred ---------cCCCchHHH----HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCcccccc
Confidence 000111111 2222333211 110 03445567778888888888875 122 233322
Q ss_pred CCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe
Q 037063 466 PKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA 545 (588)
Q Consensus 466 p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS 545 (588)
..|++..+. . ++.+.+.+++++.||.+.+| . |||
T Consensus 348 -----p~gg~f~~~--~-----~~~~~~~~L~~~~~v~v~p~---------------------------------~-Ris 381 (404)
T PTZ00376 348 -----NQIGMFSFT--G-----LTKEQVERLIEKYHIYLLDN---------------------------------G-RIS 381 (404)
T ss_pred -----cCceEEEec--C-----CCHHHHHHHHHhCCEeecCC---------------------------------C-eEE
Confidence 245554442 2 33566677888889987532 2 899
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q 037063 546 LGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 546 lg~~~t~eDv~~li~~l~~~l~ 567 (588)
++. -+.++++++++.|++++.
T Consensus 382 ~~~-~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 382 VAG-LTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred Eec-cCHHhHHHHHHHHHHHHh
Confidence 863 478999999999999875
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.2e-14 Score=149.90 Aligned_cols=331 Identities=13% Similarity=0.109 Sum_probs=198.7
Q ss_pred CCCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
.++..|+|..+ .|.-.+.+.+++.+.+.. .... .+. + ..+...
T Consensus 28 ~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~-~~~~----------------------~~~-----~---~~~~~~ 76 (389)
T PRK01278 28 EDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEK-LWHV----------------------SNL-----Y---RIPEQE 76 (389)
T ss_pred CCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHh-cCcc----------------------ccc-----c---CChHHH
Confidence 36788999866 467677888887666532 1100 000 0 023455
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhC---CCCCCC----eEE-EcCCCchhHHHHHHHHHHhcCCEEEE-
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY---PFYSNP----RLL-TVYDHENEAAALMIESSKKRGARVSS- 253 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~---~~~~gd----~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~- 253 (588)
++.++++++.+. + .|+|++|+++|+..++... ...+|+ +|+ ....||.....++ . ..|.....
T Consensus 77 ~la~~l~~~~~~--~--~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~-~---~~~~~~~~~ 148 (389)
T PRK01278 77 RLAERLVENSFA--D--KVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATI-A---AGGQEKYLE 148 (389)
T ss_pred HHHHHHHhhCCC--C--EEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHH-h---ccCChhhcc
Confidence 777888887643 2 4999999999999886654 234555 555 5666776333332 1 11221111
Q ss_pred --EeccCCCC----ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCcc-CC---HHHH-HHHHHcCcEEEEeCCCc
Q 037063 254 --AEFAWPNL----RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGAR-YS---YMWM-SVAAEKGWHVLLDATAL 322 (588)
Q Consensus 254 --v~~~~~~~----~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~-~p---l~~I-~~a~~~g~~vvvDaa~~ 322 (588)
.+.. ++. ..|++++++.++ +++++|++..+++++|.. +| +++| ++|+++|+++|+|.++.
T Consensus 149 ~~~~~~-~~~~~~~~~d~~~l~~~l~--------~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~ 219 (389)
T PRK01278 149 GFGPLV-PGFDQVPFGDIEALKAAIT--------PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQC 219 (389)
T ss_pred cCCCCC-CCceEeCCCCHHHHHHhhC--------CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 0110 111 147889999887 679999999999999944 44 5557 89999999999999865
Q ss_pred C-CCCCC--CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccccccc
Q 037063 323 G-SKDMD--TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQ 399 (588)
Q Consensus 323 ~-~~d~~--~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f 399 (588)
. +..-. ........+|+ .++.|.++. ...+|+++.+++.++.+.....+ .
T Consensus 220 g~g~~g~~~~~~~~~~~pdi--~t~sK~l~~-G~~ig~~~~~~~~~~~~~~~~~~--~---------------------- 272 (389)
T PRK01278 220 GMGRTGKLFAHEWAGVTPDI--MAVAKGIGG-GFPLGACLATEEAAKGMTPGTHG--S---------------------- 272 (389)
T ss_pred CCCcCCcceeecccCCCCCE--EEEehhccC-CcceEEEEEcHHHHhccCCCCCC--C----------------------
Confidence 2 21101 11111223775 467897772 23499999998877655432211 0
Q ss_pred ccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC-eEEEeCCCCCCCcccEEEE
Q 037063 400 SKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIP-LVRIYGPKVMFDRGPSLAF 478 (588)
Q Consensus 400 ~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~-~v~i~~p~~~~~rg~iv~f 478 (588)
..+ .+... .++..++|+.+++ +...++.+.+.+++.++|+.+... .+ .+... ...|.++.+
T Consensus 273 -t~~-~~~~~---~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~l~~l~~~-----~~~~~~~v-----~g~G~~~~i 334 (389)
T PRK01278 273 -TYG-GNPLA---MAVGNAVLDVILA---PGFLDNVQRMGLYLKQKLEGLVDR-----FPDVIEEV-----RGKGLLLGL 334 (389)
T ss_pred -CCC-ccHHH---HHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHhh-----CCCceeeE-----ecccEEEEE
Confidence 001 11111 1344466776644 345667777777777777765211 12 11111 123455555
Q ss_pred EeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHH
Q 037063 479 NVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRL 558 (588)
Q Consensus 479 ~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~l 558 (588)
.+.. +...+.+.|.++||.+.++. ...||+++.+..+.+||+++
T Consensus 335 ~~~~------~~~~~~~~l~~~GV~~~p~~------------------------------~~~lR~~p~~~~~~~~i~~~ 378 (389)
T PRK01278 335 KCVV------PNRDLVQALRDEGLLTVGAG------------------------------DNVVRLLPPLIITEEEIDEA 378 (389)
T ss_pred EEec------CHHHHHHHHHHCCeEEeecC------------------------------CCEEEEeCCcccCHHHHHHH
Confidence 4432 24566666666799876541 12899999988999999999
Q ss_pred HHHHHHhhhh
Q 037063 559 WAFVSRFLDA 568 (588)
Q Consensus 559 i~~l~~~l~~ 568 (588)
++.|++++++
T Consensus 379 l~~l~~~l~~ 388 (389)
T PRK01278 379 LERLERAAES 388 (389)
T ss_pred HHHHHHHHHh
Confidence 9999988754
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-14 Score=154.36 Aligned_cols=150 Identities=13% Similarity=0.142 Sum_probs=107.3
Q ss_pred ceEEEecCHHHHHHHHHHh-----CCCCCCCeEEEcCCCchhHHHHHHHHHHhc--CCEEEEEeccC-CCCccCHHHHHH
Q 037063 199 YTLVFTANQSSAFKLLAES-----YPFYSNPRLLTVYDHENEAAALMIESSKKR--GARVSSAEFAW-PNLRIHSGKLMK 270 (588)
Q Consensus 199 ~~vvft~g~T~al~lv~~s-----~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~--G~~v~~v~~~~-~~~~i~~e~l~~ 270 (588)
.+|++|+|+++|+..++.+ + +++||+|++....+..+ ...++.. |++++.++.+. .+..++.++|++
T Consensus 162 ~~I~vT~Ga~~al~~~~~aL~~~~l-l~pGD~Vlv~~P~y~~Y----~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~ 236 (527)
T PRK09275 162 FDLFAVEGGTAAMCYIFDSLKENGL-LKAGDKIALMTPIFTPY----LEIPELPRYDLEVVHINADEENEWQYPDSELEK 236 (527)
T ss_pred CeEEEeCCHHHHHHHHHHHHhhhhc-CCCCCEEEEeCCChHHH----HHHHHHcCCCeEEEEeecCcccCCCCCHHHHHh
Confidence 4699999999999988876 5 89999988766655422 2233334 55666666542 236789999998
Q ss_pred HHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHH--cCcEEEEeCCC--cCCCCCCCCCCCCC-CCcEEE
Q 037063 271 KIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAE--KGWHVLLDATA--LGSKDMDTLGLSLF-KPDFLI 341 (588)
Q Consensus 271 ~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~--~g~~vvvDaa~--~~~~d~~~l~l~~~-~~D~vv 341 (588)
+++ +++++|++..++||||..++.++ | ++|++ ++++||+|.+- +.+ ...++ ++.. .--+++
T Consensus 237 ~~~--------~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~-~~~s~-~~~~~~~~I~v 306 (527)
T PRK09275 237 LRD--------PSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD-DFRSL-FAVLPYNTILV 306 (527)
T ss_pred hcC--------CCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc-cccCH-HHhCCCCEEEE
Confidence 887 78999999999999999999666 4 66754 59999999982 222 11111 0111 134788
Q ss_pred eccCccCCCCCCceEEEEEeCc
Q 037063 342 CSFYKIFGENPSGFGCLFVKKS 363 (588)
Q Consensus 342 ~S~~K~~G~~P~G~G~L~v~~~ 363 (588)
.|+.|.||++.-++|+++.+++
T Consensus 307 ~SfSK~f~mtG~RlG~i~~~~~ 328 (527)
T PRK09275 307 YSFSKYFGATGWRLGVIALHED 328 (527)
T ss_pred eehhhhccCcHhHHhhhhcCch
Confidence 8999999864556899999886
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.2e-14 Score=148.84 Aligned_cols=292 Identities=13% Similarity=0.126 Sum_probs=177.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCC-------CeEE-EcCCCchhHHHHHHHHHHhcCC
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSN-------PRLL-TVYDHENEAAALMIESSKKRGA 249 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~g-------d~ll-~~~e~~s~~~~~~~~~a~~~G~ 249 (588)
.+...++.++++++.+. + .++||+|+++|+.+++... ...+ ++++ ....||...... .. ..+.
T Consensus 80 ~~~~~~la~~l~~~~~~--~--~v~~~~gg~eA~~~al~~a-~~~~~~~~~~~~~ii~~~~~yhg~~~~~-~~---~~~~ 150 (396)
T PRK02627 80 IEPQEELAEKLVELSGM--D--KVFFCNSGAEANEAAIKLA-RKYGHKKGIEKPEIITAENSFHGRTLAT-LS---ATGQ 150 (396)
T ss_pred CHHHHHHHHHHHhhcCC--C--EEEECCCcHHHHHHHHHHH-HHHhcccCCCCCeEEEECCCcCcccHHH-HH---hcCC
Confidence 35566888888888765 3 4999999999999988854 2211 4554 455555311111 11 1121
Q ss_pred EEE---EEeccCCCC----ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCc-cCC---HHHH-HHHHHcCcEEEE
Q 037063 250 RVS---SAEFAWPNL----RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGA-RYS---YMWM-SVAAEKGWHVLL 317 (588)
Q Consensus 250 ~v~---~v~~~~~~~----~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~-~~p---l~~I-~~a~~~g~~vvv 317 (588)
... ..+.. ++. ..|.+++++++. +++++|++..++|++|. .+| +++| ++|+++|+++|+
T Consensus 151 ~~~~~~~~~~~-~~~~~~~~~d~~~l~~~i~--------~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~ 221 (396)
T PRK02627 151 PKYQEGFEPLV-EGFIYVPFNDIEALKAAIT--------DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLIL 221 (396)
T ss_pred ccccccCCCCC-CCceEeCCCCHHHHHHhcC--------CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 111 11111 100 117889998886 68999999999999994 444 5667 899999999999
Q ss_pred eCCCc-CCCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 318 DATAL-GSKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 318 Daa~~-~~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
|.++. ++.. ...+......+|++ ++.|.+|. ...+|++++++++++.+...... .
T Consensus 222 DE~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~~~~-G~rig~~~~~~~~~~~~~~~~~~--~----------------- 279 (396)
T PRK02627 222 DEVQTGMGRTGKLFAYQHYGIEPDIM--TLAKGLGG-GVPIGAVLAKEKVADVFTPGDHG--S----------------- 279 (396)
T ss_pred echhcCCCccCceeeehhcCCCCCEE--EEcchhhC-CcccEEEEEcHHHHhccCCCCCC--C-----------------
Confidence 99965 2211 11111112237754 57798873 45699999998877666432211 0
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
..+. +... .++..++|+.+.. +.+.++.+.+.+++.+.|.++... .+.+... ...|.
T Consensus 280 ------t~~~-~~~~---~~aa~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~-----~~~g~ 336 (396)
T PRK02627 280 ------TFGG-NPLA---CAAALAVIEIIEE---EGLLENAAEVGEYLRAKLRELLEK-----YPGIKEV-----RGLGL 336 (396)
T ss_pred ------CCCC-CHHH---HHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHh-----CCCeeee-----ccCcE
Confidence 0011 1111 1344456665544 345667777777777777664210 1222111 12355
Q ss_pred EEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHH
Q 037063 475 SLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFED 554 (588)
Q Consensus 475 iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eD 554 (588)
++.+.+ + .+...+.+.+.++||.+.++. . .+||+++++..+.+|
T Consensus 337 ~~~i~~-~-----~~~~~~~~~l~~~Gv~v~~~~----------------------------~--~~lRi~~~~~~~~~~ 380 (396)
T PRK02627 337 MIGIEL-D-----RPAAEIVKKALEKGLLINVTG----------------------------D--NVLRLLPPLIISKEE 380 (396)
T ss_pred EEEEEe-c-----CcHHHHHHHHHHCCeEEeecC----------------------------C--CEEEEECCcccCHHH
Confidence 666665 2 235566666666799987541 1 279999998999999
Q ss_pred HHHHHHHHHHhhhh
Q 037063 555 TYRLWAFVSRFLDA 568 (588)
Q Consensus 555 v~~li~~l~~~l~~ 568 (588)
++++++.|+++++.
T Consensus 381 i~~~~~~l~~~l~~ 394 (396)
T PRK02627 381 IDEAVDRLEEVLKE 394 (396)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998753
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5e-14 Score=150.98 Aligned_cols=291 Identities=14% Similarity=0.118 Sum_probs=179.0
Q ss_pred HHHHHHHHHhC------CCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 183 KIRKRIMDFMN------ISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 183 ~~r~~ia~~lg------a~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
++|+.|++++. +++++-.|++|+|+++|+.+++..+. +++||+|++....+..+ ...++..|++++.++
T Consensus 73 ~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~----~~~~~~~g~~~v~v~ 148 (396)
T PRK09257 73 AYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNH----RAIFEAAGLEVKTYP 148 (396)
T ss_pred HHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccH----HHHHHHcCCcEEEEe
Confidence 67777777752 23433123999999999999987653 47999987766554322 445677899999999
Q ss_pred c-cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCc-CCCC---
Q 037063 256 F-AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATAL-GSKD--- 326 (588)
Q Consensus 256 ~-~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~-~~~d--- 326 (588)
. +.+++.++.+++++.+.. ..+++.+++++.++||||..++.+++ ++|+++|+++|+|.+-. +..+
T Consensus 149 ~~~~~~~~~d~~~l~~~~~~-----~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~ 223 (396)
T PRK09257 149 YYDAATKGLDFDAMLADLSQ-----APAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEE 223 (396)
T ss_pred ccccccCccCHHHHHHHHHh-----CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHH
Confidence 7 323467999999998862 11346888889999999999998874 67889999999999822 1111
Q ss_pred -CCCC-CCC-CCCCcEEEeccCccCCCCCCceEEEEE--eC-cch----hcccCCCCCCCceEeeecCCCcccccccccc
Q 037063 327 -MDTL-GLS-LFKPDFLICSFYKIFGENPSGFGCLFV--KK-SSA----SVLSGSTSSVSTIMGIEPSFSEIIELETLDE 396 (588)
Q Consensus 327 -~~~l-~l~-~~~~D~vv~S~~K~~G~~P~G~G~L~v--~~-~~~----~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~ 396 (588)
...+ .+. ....-+++.||.|.||.+..++|++++ .. +.+ ..+.......
T Consensus 224 ~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 282 (396)
T PRK09257 224 DAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTN--------------------- 282 (396)
T ss_pred HHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhh---------------------
Confidence 0010 001 111237788999999843456899884 22 222 2221111000
Q ss_pred cccccCCCCCccchhhHHHHHHHHHH------HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC-eEEEeCCCCC
Q 037063 397 SSQSKFPESSISGVSSKLVECKGLDH------ADALGLILISNRARYLINWLANALMNLHHPHSETGIP-LVRIYGPKVM 469 (588)
Q Consensus 397 ~~f~e~GT~~~~~~~~~~al~~aL~~------l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~-~v~i~~p~~~ 469 (588)
..+.+.+.+ .++...|.. +++. ++++.++.++.++.+.+.|.++ +.+ .+.+..
T Consensus 283 ----~~~~~~~~q----~~~~~~l~~~~~~~~~~~~-~~~~r~~~~~rr~~l~~~L~~~-------~~~~~~~~~~---- 342 (396)
T PRK09257 283 ----YSNPPAHGA----AIVATILNDPELRAEWEAE-LEEMRERIKAMRQLLVEALKAK-------GPSRDFDFIA---- 342 (396)
T ss_pred ----cCCCcHHHH----HHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc-------CCCCCccccc----
Confidence 000111111 122222221 1111 4556777777888888888875 111 243332
Q ss_pred CCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC
Q 037063 470 FDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL 549 (588)
Q Consensus 470 ~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~ 549 (588)
..|++..+. . ++.+.+.+++.+.||.+.+ . . |++++.
T Consensus 343 -p~gg~~~w~--~-----l~~~~~~~l~~~~~V~~~p------------------------------~---~-ri~~~~- 379 (396)
T PRK09257 343 -RQRGMFSYS--G-----LTPEQVDRLREEFGVYAVG------------------------------S---G-RINVAG- 379 (396)
T ss_pred -ccceEEEec--C-----CCHHHHHHHHHcCCEEEcC------------------------------C---C-eEEEee-
Confidence 235544332 2 3456778888999997642 1 2 888753
Q ss_pred CCHHHHHHHHHHHHHhh
Q 037063 550 TNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 550 ~t~eDv~~li~~l~~~l 566 (588)
-+.++|+.+++.|++.|
T Consensus 380 ~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 380 LNESNIDYVAEAIAAVL 396 (396)
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 47899999999988653
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-14 Score=146.28 Aligned_cols=168 Identities=15% Similarity=0.116 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCC
Q 037063 180 LESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWP 259 (588)
Q Consensus 180 ~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~ 259 (588)
....+.+.|+++-|+. + ++..+++..|+..+...+ ..+|++++...+-+......+.++..+.|+++.+++.+
T Consensus 78 t~~~le~~iaal~ga~---~-~l~fsSGmaA~~~al~~L-~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~-- 150 (409)
T KOG0053|consen 78 TRDVLESGIAALEGAA---H-ALLFSSGMAAITVALLHL-LPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD-- 150 (409)
T ss_pred chHHHHHHHHHHhCCc---e-EEEecccHHHHHHHHHHh-cCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechh--
Confidence 3457888999999985 2 556666666667777777 68899976433433446667788888999999998875
Q ss_pred CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCc
Q 037063 260 NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPD 338 (588)
Q Consensus 260 ~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D 338 (588)
+.+++++.+. +++++|.+..++||+....|+++| ++||++|+.|+||.+-..|...+++.+. +|
T Consensus 151 ----~~~~~~~~i~--------~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lG---AD 215 (409)
T KOG0053|consen 151 ----DLKKILKAIK--------ENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQDPLPLG---AD 215 (409)
T ss_pred ----hHHHHHHhhc--------cCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccccChhhcC---CC
Confidence 5678888887 789999999999999999999999 9999999999999997777555555432 99
Q ss_pred EEEeccCccCCCCC-CceEEEEEe-Ccchhccc
Q 037063 339 FLICSFYKIFGENP-SGFGCLFVK-KSSASVLS 369 (588)
Q Consensus 339 ~vv~S~~K~~G~~P-~G~G~L~v~-~~~~~~l~ 369 (588)
+++-|..|++|.+- .=.|.+.++ .+..++++
T Consensus 216 IV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~ 248 (409)
T KOG0053|consen 216 IVVHSATKYIGGHSDVIGGSVVLNSEELASRLK 248 (409)
T ss_pred EEEEeeeeeecCCcceeeeEEecCcHHHHHHHH
Confidence 99999999888211 115666665 34444443
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.9e-14 Score=149.71 Aligned_cols=322 Identities=13% Similarity=0.098 Sum_probs=191.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHH-HHHHHHHHhCCCC--CCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQS-SAFKLLAESYPFY--SNPRLL-TVYDHENEAAALMIESSKKRGARVSS 253 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T-~al~lv~~s~~~~--~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~ 253 (588)
..+..++.+.+++++|++.- ...++++++| .++.+++.++..+ +|++|+ ....|.+ . .+.+...|+++++
T Consensus 104 ~~l~~~~e~~~~~~~G~~~~-~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S-~----~kAi~~~G~~pv~ 177 (444)
T TIGR03531 104 YKLTNKLVKDFLKLLGLRSI-KSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKS-C----IKAISTAGFEPRV 177 (444)
T ss_pred HHHHHHHHHHHHHHcCCCCC-CEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHH-H----HHHHHHcCCeEEE
Confidence 67888999999999999643 2488889999 6888888887643 578866 4445443 3 3445667999999
Q ss_pred Eec--cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCC-CCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC-CCC
Q 037063 254 AEF--AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQS-KVTGARYSYMWM-SVAAEKGWHVLLDATALGSK-DMD 328 (588)
Q Consensus 254 v~~--~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~s-n~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~-d~~ 328 (588)
++. +.+++.+|+++|+++|+. ...++.++++..++ ...|...|+++| ++|+++|+++|+|+|+.... ...
T Consensus 178 Vd~~~d~~~~~iD~e~Le~aIt~-----~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~ 252 (444)
T TIGR03531 178 IETVLDGDELTTDVEDIERAIEE-----IGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYM 252 (444)
T ss_pred eeeeecCcCCCcCHHHHHHHHHh-----ccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhh
Confidence 994 446788999999999982 01145555555443 445689999999 99999999999999977641 111
Q ss_pred CC---CCCCCCCcEEEeccCccCCCCCCceEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 329 TL---GLSLFKPDFLICSFYKIFGENPSGFGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 329 ~l---~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
.+ +...-++|++++|+||++.. |.+.|++++++ ++++.+...+.+. ..++
T Consensus 253 ~~~~~g~~~Grad~vv~s~hK~l~~-pg~Gg~I~~~d~el~~~i~~~y~g~-------------------------~~~s 306 (444)
T TIGR03531 253 ELINKAIKVGRVDAVVSSTDKNFMV-PVGGAIIYSFDENFIQEISKSYPGR-------------------------ASAS 306 (444)
T ss_pred hhhhccccccCCCeEEEeCccCCCC-CCCEEEEEECCHHHHHHHHHhccCC-------------------------CCCh
Confidence 11 11111379999999998875 77777777854 4545554433221 0000
Q ss_pred CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeC-CCCCCCcccEEEEEeecC
Q 037063 405 SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYG-PKVMFDRGPSLAFNVFDW 483 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~-p~~~~~rg~iv~f~~~~~ 483 (588)
+ . ..+...+..+..-|++++.++..++++++.+.|.++.-.. +.+++. |.. +- -+++.+...
T Consensus 307 ~---~----~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~------~~~~~~~~~n--~i--s~~~~~~~~ 369 (444)
T TIGR03531 307 P---S----LDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLAERH------GERLLDTPEN--PI--SSAMTLSTL 369 (444)
T ss_pred H---H----HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------CcEeecCCCC--ce--eEEEecccc
Confidence 0 0 1111222222223577788888889999999998863221 234432 211 11 122333321
Q ss_pred CCCCcCHHHHHHHHHhCCcE----eccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHH
Q 037063 484 NGTRIDPALVQKLADRHNIS----LSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLW 559 (588)
Q Consensus 484 ~g~~i~~~~v~~~l~~~gI~----v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li 559 (588)
.+ -+...+-..|-..+|. |..|..-..+.... ..+.. .....-.+++.+....-.+.+|||.|+
T Consensus 370 ~~--~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~~~~~------~~~~~----~~~~~~~~y~~~~~~~g~~~~~~~~~~ 437 (444)
T TIGR03531 370 KG--KDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGCEF------KGYGS----HTSNYPCPYITAAAAIGMTKEDVDTFV 437 (444)
T ss_pred cc--cCHHHHHHHHHhCCCCCceeecCCCceEECCEEe------ecccc----cccCCCchhHHHHHHhCCcHHHHHHHH
Confidence 11 2356666666666663 22221000000000 00000 000011236777766777999999999
Q ss_pred HHHHHh
Q 037063 560 AFVSRF 565 (588)
Q Consensus 560 ~~l~~~ 565 (588)
+.|.+.
T Consensus 438 ~~l~~~ 443 (444)
T TIGR03531 438 SRLEKS 443 (444)
T ss_pred HHHhhc
Confidence 997764
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-13 Score=146.96 Aligned_cols=172 Identities=12% Similarity=0.048 Sum_probs=115.2
Q ss_pred HHHHHHHHHHhC-----CCCCC-ceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 182 SKIRKRIMDFMN-----ISEDD-YTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 182 ~~~r~~ia~~lg-----a~~~e-~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.++|+.+++++. .++++ .+|++|+|+++++.+++..+ .++||+|++....+.+... .++...|++++.++
T Consensus 47 ~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~---~~~~~~g~~vv~v~ 122 (388)
T PRK08637 47 PELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLF-VDQGDTVLLPDHNWGNYKL---TFNTRRGAEIVTYP 122 (388)
T ss_pred HHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHh-cCCCCEEEEcCCCCccHHH---HHHHhcCCEEEEec
Confidence 367777777652 33221 35899999999999999998 7999998776655442321 12234799999999
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHH-----cCcEEEEeCCCc--C-
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAE-----KGWHVLLDATAL--G- 323 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~-----~g~~vvvDaa~~--~- 323 (588)
...+++.++.+++++.++ ....+.+.+++++.++||||..++.+++ ++|++ +++++|+|.+-. .
T Consensus 123 ~~~~~~~~d~~~l~~~~~----~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~ 198 (388)
T PRK08637 123 IFDEDGGFDTDALKEALQ----AAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFY 198 (388)
T ss_pred ccCCCCcCCHHHHHHHHH----hhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhccc
Confidence 832445689999998876 1112456789999999999999998875 44554 899999999832 1
Q ss_pred -CCCCCCC--CC-CCC-CCc-EEEeccCccCCCCCCceEEEEEe
Q 037063 324 -SKDMDTL--GL-SLF-KPD-FLICSFYKIFGENPSGFGCLFVK 361 (588)
Q Consensus 324 -~~d~~~l--~l-~~~-~~D-~vv~S~~K~~G~~P~G~G~L~v~ 361 (588)
+....++ .+ +.. ++- +++.|+.|.|+.+...+|++++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~ 242 (388)
T PRK08637 199 EDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFG 242 (388)
T ss_pred CCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEc
Confidence 1111111 01 111 121 22349999777555679999875
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=153.16 Aligned_cols=280 Identities=13% Similarity=0.075 Sum_probs=178.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
...+.++++..|+.+|++ .+...|.|+|.++..++.++ .++||+|+++...|-+.+..+ ...|+++++++..
T Consensus 65 ~G~I~eAe~~aA~~fGAd---~t~flvnGsT~g~~a~i~a~-~~~gd~VLv~RN~HkSv~~al----il~ga~Pvyi~p~ 136 (417)
T PF01276_consen 65 EGIIKEAEELAARAFGAD---KTFFLVNGSTSGNQAMIMAL-CRPGDKVLVDRNCHKSVYNAL----ILSGAIPVYIPPE 136 (417)
T ss_dssp BTHHHHHHHHHHHHHTES---EEEEESSHHHHHHHHHHHHH-TTTTCEEEEETT--HHHHHHH----HHHTEEEEEEEEE
T ss_pred ccHHHHHHHHHHHhcCCC---eEEEEecCchHHHHHHHHHh-cCCCCEEEEcCCcHHHHHHHH----HHcCCeEEEecCC
Confidence 457789999999999996 45888899999999999999 899999998888776565553 3459999999875
Q ss_pred CCC----CccCH-----HHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcC--CC
Q 037063 258 WPN----LRIHS-----GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALG--SK 325 (588)
Q Consensus 258 ~~~----~~i~~-----e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~--~~ 325 (588)
... +.+++ ++|+++|++. ...+..++|++++++ ..|..+++++| ++|+++|++|+||+|+.. +.
T Consensus 137 ~~~~gi~~~i~~~~~~~~~i~~~l~~~---p~~k~~~~vvlt~PT-Y~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F 212 (417)
T PF01276_consen 137 DNEYGIIGGISPDEFNEEDIEEALKEH---PDAKAPRLVVLTSPT-YYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGF 212 (417)
T ss_dssp E-TTS-BEEB-GGGGSHHHHHHHHHHC---TTCHCESEEEEESS--TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGC
T ss_pred ccccCCccCCChhhhhHHHHHHHHHhC---ccccCceEEEEeCCC-CCeEEECHHHHHHHhcccCCEEEEEccccccccC
Confidence 221 23566 8999999831 111125668888764 59999999999 999999999999999554 21
Q ss_pred CCCCCCCCCCCCc-------EEEeccCccCCCCCCceEEEEEeCcc-h--hcccCCCCCCCceEeeecCCCccccccccc
Q 037063 326 DMDTLGLSLFKPD-------FLICSFYKIFGENPSGFGCLFVKKSS-A--SVLSGSTSSVSTIMGIEPSFSEIIELETLD 395 (588)
Q Consensus 326 d~~~l~l~~~~~D-------~vv~S~~K~~G~~P~G~G~L~v~~~~-~--~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~ 395 (588)
...+.+-...++| +++-|.||.++. -+-.++|.++.+. + ++++..+ .
T Consensus 213 ~~lp~~a~~~gad~~~~~~~~vvqS~HKtL~a-ltQts~lh~~~~~~v~~~~~~~~l----~------------------ 269 (417)
T PF01276_consen 213 HPLPRSALALGADRPNDPGIIVVQSTHKTLPA-LTQTSMLHVKGDRIVDHERVNEAL----S------------------ 269 (417)
T ss_dssp SGGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS--TT-EEEEEETCCCTTHHHHHHHH----H------------------
T ss_pred CCCccchhhccCccccccceeeeechhhcccc-cccceEEEecCCCcccHHHHHHHH----H------------------
Confidence 1001111123378 999999997774 6788999999875 3 2222111 0
Q ss_pred ccccccCCCCCccchhhHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc--
Q 037063 396 ESSQSKFPESSISGVSSKLVECKGLDHA-DALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR-- 472 (588)
Q Consensus 396 ~~~f~e~GT~~~~~~~~~~al~~aL~~l-~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r-- 472 (588)
.| ...+|+++- ++++..|.+++ ...| +++.++...++..++++|.+++ ..+.+++.+|+.-...
T Consensus 270 --~~-~TTSPSY~l---mASlD~a~~~m~~~~G-~~l~~~~i~~a~~~R~~i~~~~------~~~~~~~~~~~~v~~~~~ 336 (417)
T PF01276_consen 270 --MH-QTTSPSYPL---MASLDVARAQMEEEEG-RELLEEAIELAEEFRKKINRLN------DIWGFKVLGPEDVGGEGC 336 (417)
T ss_dssp --HH-S-SS--HHH---HHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHC------CT-SSEESS-SEECTCCG
T ss_pred --HH-cCCChHHHH---HHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhcC------CCceEecCCccccCCccc
Confidence 12 333455544 47777888887 4445 5566777778888888885432 2456777766421111
Q ss_pred -----------------------ccEEEEEeec--CCC----CCcCHHHHHHHHHhCCcEec
Q 037063 473 -----------------------GPSLAFNVFD--WNG----TRIDPALVQKLADRHNISLS 505 (588)
Q Consensus 473 -----------------------g~iv~f~~~~--~~g----~~i~~~~v~~~l~~~gI~v~ 505 (588)
.-=+++.+++ .+| ..++...+.+.|.++||.+-
T Consensus 337 ~~~~~~~~whgf~~~~~~~~~lDP~K~ti~~pG~~~~g~~~~~Gi~g~~~~~~L~~~~I~~E 398 (417)
T PF01276_consen 337 WDLDPGENWHGFEGLADDYYMLDPTKLTINTPGIDADGELSELGIPGYIVEKYLREHGIQVE 398 (417)
T ss_dssp CB--TT-TTT--TT--TTSEEE-TTEEEEE-STBETTSSB-SS---HHHHHHHHHHTTEE-S
T ss_pred cccCccccchhchhcccCccccCCcEEEEEccCcCcCCcccccCCCHHHHHHHHHHcCCEEE
Confidence 1123444421 222 23788889999999999874
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-13 Score=147.75 Aligned_cols=342 Identities=11% Similarity=0.082 Sum_probs=206.1
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
.++.-|||..+. |--.+.+++++.+.+....... +.. ..+...
T Consensus 72 ~dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~--------------------------~~~-----~~~~~~ 120 (474)
T PLN02624 72 PEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSS--------------------------RAF-----YNDKFP 120 (474)
T ss_pred CCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCcc--------------------------ccc-----CCHHHH
Confidence 367889998653 3447788888876664311110 001 034456
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-------CCCCe-EE-EcCCCchhHHHHHHHHHH----hcC
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-------YSNPR-LL-TVYDHENEAAALMIESSK----KRG 248 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-------~~gd~-ll-~~~e~~s~~~~~~~~~a~----~~G 248 (588)
++.++++++++. + .++|+.++++|+..++.... + .+++. |+ ....||......+ .+.. ..+
T Consensus 121 ~la~~L~~~~~~--~--~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~-s~~~~~~~~~~ 195 (474)
T PLN02624 121 EFAEYLTSMFGY--D--MVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAI-SMSCDNEATRG 195 (474)
T ss_pred HHHHHHHhhcCC--C--eEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHh-hcCCCcccccc
Confidence 788888888864 2 49999999998876664221 1 12333 55 3444555222211 1100 000
Q ss_pred -----CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEe
Q 037063 249 -----ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLD 318 (588)
Q Consensus 249 -----~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvD 318 (588)
..+..++.. |.+.+++.+.. ..+++.+|++..+.+++|.++| +++| ++|+++|+++|+|
T Consensus 196 ~~~~~~~~~~~~~~------d~~~l~~~l~~-----~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~D 264 (474)
T PLN02624 196 FGPLLPGHLKVDFG------DLDALEKIFEE-----DGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIAD 264 (474)
T ss_pred CCCCCCCceEeCCC------CHHHHHHHHHh-----CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 112233331 57888888862 1256889999999999999999 8889 9999999999999
Q ss_pred CCCc-CCCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccc
Q 037063 319 ATAL-GSKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLD 395 (588)
Q Consensus 319 aa~~-~~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~ 395 (588)
.++. ++.. .-..+.....+|++++| |-+|.+...+|++++++++++.+.+...+ .
T Consensus 265 Ev~tG~GrtG~~~a~~~~~i~pDiv~ls--K~lggG~~pigav~~~~~i~~~~~~~~~~--~------------------ 322 (474)
T PLN02624 265 EIQTGLARTGKMLACDWEEVRPDVVILG--KALGGGVIPVSAVLADKDVMLCIKPGEHG--S------------------ 322 (474)
T ss_pred ccccCcCcCcchhhHHhcCCCCCEEEec--ccccCCCCcceeeeecHHHHhHhccCCcC--C------------------
Confidence 9976 2211 11111123458988864 97764224589999988776655433211 0
Q ss_pred ccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe-EEEeCCCCCCCccc
Q 037063 396 ESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPL-VRIYGPKVMFDRGP 474 (588)
Q Consensus 396 ~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~-v~i~~p~~~~~rg~ 474 (588)
.| | .+... .++..++|+.+.+ +.+.++...+.+++++.|.++... .+. +.-+ ..+|.
T Consensus 323 --T~---~-g~pl~---~aaa~aaLe~l~~---~~l~~~~~~~~~~l~~~L~~l~~~-----~~~~i~~v-----rg~G~ 380 (474)
T PLN02624 323 --TF---G-GNPLA---SAVAMAALQVVQD---EKLAERSAKLGQELRDQLQKIQKQ-----FPKLIKEV-----RGRGL 380 (474)
T ss_pred --CC---C-CCHHH---HHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHh-----CCCceEEE-----EeeEE
Confidence 00 1 11111 2455567776655 346667777888888887775211 121 2111 12456
Q ss_pred EEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHH
Q 037063 475 SLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFED 554 (588)
Q Consensus 475 iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eD 554 (588)
++.+.+............+.+.|.++||.+.++ +...||+++.+..|.+|
T Consensus 381 ~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~------------------------------~~~~lR~~p~l~~t~e~ 430 (474)
T PLN02624 381 LNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPT------------------------------HDTIIRLAPPLSISEDE 430 (474)
T ss_pred EEEEEecCCCcChHHHHHHHHHHHhCCeEEecC------------------------------CCCEEEEECCccCCHHH
Confidence 666665432100012345666778899988643 11289999999999999
Q ss_pred HHHHHHHHHHhhhhhhc
Q 037063 555 TYRLWAFVSRFLDADFV 571 (588)
Q Consensus 555 v~~li~~l~~~l~~~~~ 571 (588)
|+.+++.|+++++.+-.
T Consensus 431 id~~l~~L~~~l~~~~~ 447 (474)
T PLN02624 431 LQECSKALSDVLEHDLP 447 (474)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887754
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-13 Score=153.48 Aligned_cols=234 Identities=12% Similarity=0.022 Sum_probs=162.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
...+.++.+..|+++|++ .+...|+|+|.++..++.+. .++||+|+++.+.|-+.+.++ ...|++.++++..
T Consensus 204 ~G~I~eAq~~aA~~fgA~---~t~FlvNGST~gn~a~i~a~-~~~gd~Vlv~RN~HKSv~~al----~L~ga~Pvyl~P~ 275 (755)
T PRK15029 204 TGAFGESEKYAARVFGAD---RSWSVVVGTSGSNRTIMQAC-MTDNDVVVVDRNCHKSIEQGL----ILTGAKPVYMVPS 275 (755)
T ss_pred CcHHHHHHHHHHHHhCCC---cEEEEeCChhHHHHHHHHHh-cCCCCEEEeecccHHHHHHHH----HHcCCeEEEeccc
Confidence 467889999999999996 45899999999999999998 899999998888876555543 4569999999755
Q ss_pred CCC----CccC-----HHHHHHHHhhhcc--ccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-
Q 037063 258 WPN----LRIH-----SGKLMKKIVGKRK--KKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS- 324 (588)
Q Consensus 258 ~~~----~~i~-----~e~l~~~i~~~~~--~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~- 324 (588)
+.. +.++ ++.++++|.+... .....++++++++++ +..|..++++.| +.|+++|++|+||.|+.+-
T Consensus 276 ~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~ 354 (755)
T PRK15029 276 RNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_pred ccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcceeeCHHHHHHHHHhcCCeEEEECcccccc
Confidence 322 2345 8999999973110 112234568888876 459999999999 9999999999999996551
Q ss_pred -C--CC---CCCCC---CCCCCc-EEEeccCccCCCCCCceEEEEEeCc--chh--cccCCCCCCCceEeeecCCCcccc
Q 037063 325 -K--DM---DTLGL---SLFKPD-FLICSFYKIFGENPSGFGCLFVKKS--SAS--VLSGSTSSVSTIMGIEPSFSEIIE 390 (588)
Q Consensus 325 -~--d~---~~l~l---~~~~~D-~vv~S~~K~~G~~P~G~G~L~v~~~--~~~--~l~~~~~g~~g~v~~~~~~~~~~~ 390 (588)
+ .+ ..+.. ...++| +++-|.||.++. -+...+|.++.. .++ +++..+
T Consensus 355 ~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~a-lTQaS~LHv~~~~~~id~~r~~~~l------------------ 415 (755)
T PRK15029 355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQAY------------------ 415 (755)
T ss_pred ccCccccccccccccccccCCCceEEEEchhhcccc-hhhhhhheeCCCccccCHHHHHHHH------------------
Confidence 1 01 22200 113588 899999998874 667778877654 111 111111
Q ss_pred cccccccccccCCCCCccchhhHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHccc
Q 037063 391 LETLDESSQSKFPESSISGVSSKLVECKGLDHADA-LGLILISNRARYLINWLANALMNLH 450 (588)
Q Consensus 391 ~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~-~G~~~i~~r~~~L~~~l~~~L~~L~ 450 (588)
..+ ...+|++.- ++++..|..+++. .| +.+.++...++..++++|.+++
T Consensus 416 ------~~~-qSTSPSY~L---mASLD~ar~~m~~~~G-~~l~~~~i~~~~~~r~~l~~~~ 465 (755)
T PRK15029 416 ------MMH-ATTSPLYAI---CASNDVAVSMMDGNSG-LSLTQEVIDEAVDFRQAMARLY 465 (755)
T ss_pred ------HHH-cCCCcHHHH---HHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhcc
Confidence 012 333455444 4777788888775 55 4556666777778888887653
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.5e-13 Score=142.16 Aligned_cols=297 Identities=9% Similarity=0.063 Sum_probs=188.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--------CCCCCe-EEEc-CCCchhHHHHHHHHHH--
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--------FYSNPR-LLTV-YDHENEAAALMIESSK-- 245 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--------~~~gd~-ll~~-~e~~s~~~~~~~~~a~-- 245 (588)
.+...++.++++++++. + .++|++++++|+..++.... ..+|+. |++. ..||......+. ...
T Consensus 78 ~~~~~~l~~~l~~~~~~--~--~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~-~~~~~ 152 (401)
T TIGR01885 78 NDVFGEFAEYVTKLFGY--D--KVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAIS-MSTDP 152 (401)
T ss_pred CHHHHHHHHHHHhhcCC--C--EEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHh-CcCCc
Confidence 35567888999999874 2 49999999999888877531 123444 5544 445642332221 111
Q ss_pred ----hcC---CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCc
Q 037063 246 ----KRG---ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGW 313 (588)
Q Consensus 246 ----~~G---~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~ 313 (588)
..| ..+..++. -|+++|+++|+. . .++..+|++..+.+++|...| +++| ++|+++|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~----~-~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~ 221 (401)
T TIGR01885 153 DSRTNFGPYVPGFKKIPY------NNLEALEEALED----H-GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNV 221 (401)
T ss_pred ccccccCCCCCCceEeCC------CCHHHHHHHHHh----c-CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 012 12333332 167899998862 1 246788889999999999998 8899 99999999
Q ss_pred EEEEeCCCcC-CCCCCC--CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccc
Q 037063 314 HVLLDATALG-SKDMDT--LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIE 390 (588)
Q Consensus 314 ~vvvDaa~~~-~~d~~~--l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~ 390 (588)
++++|.++.. +..-.. +......+|++++| |.++.+-..+|+++.++++++.+.....+ .
T Consensus 222 lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~g--K~l~~g~~~ig~v~~~~~i~~~~~~~~~~---~------------ 284 (401)
T TIGR01885 222 LLIADEIQTGLGRTGKLLCVDHENVKPDIVLLG--KALSGGVYPVSAVLADDDVMLTIKPGEHG---S------------ 284 (401)
T ss_pred EEEEechhhCCCccchhhHHhhcCCCCCEEEee--ccccCCCCCcEEEEEcHHHHhhccCCCCC---C------------
Confidence 9999999632 211111 11123458988765 96663112478899888887766532211 0
Q ss_pred cccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCC
Q 037063 391 LETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMF 470 (588)
Q Consensus 391 ~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~ 470 (588)
.| .| +... .++..++|+.+.+ +.+.++.+.+.+++++.|.++.+ +.+..+ .
T Consensus 285 -------t~--~~--~p~~---~~aa~a~L~~i~~---~~l~~~~~~~~~~~~~~L~~l~~-------~~~~~~-----~ 335 (401)
T TIGR01885 285 -------TY--GG--NPLA---CAVAVAALEVLEE---EKLAENAEKLGEIFRDQLKKLPK-------PIITEV-----R 335 (401)
T ss_pred -------CC--CC--CHHH---HHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhccC-------CceeEE-----e
Confidence 01 11 1111 2455577777765 34667888999999999998732 222111 1
Q ss_pred CcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC
Q 037063 471 DRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT 550 (588)
Q Consensus 471 ~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~ 550 (588)
..|.++.+.+.+... ......+.+.|.++||.+..+ +...||+++++..
T Consensus 336 g~g~~~~i~~~~~~~-~~~~~~l~~~l~~~Gv~v~~~------------------------------~~~~lRi~p~l~~ 384 (401)
T TIGR01885 336 GRGLLNAIVIDESKT-GRTAWDLCLKLKEKGLLAKPT------------------------------HGNIIRLAPPLVI 384 (401)
T ss_pred ecCeeEEEEeccCcc-hhHHHHHHHHHHhCCEEEEec------------------------------CCCEEEEeCCccC
Confidence 346777766643210 123456677777889987542 1128999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 037063 551 NFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 551 t~eDv~~li~~l~~~l~ 567 (588)
+++||+++++.|++++|
T Consensus 385 t~~~i~~~l~~l~~~l~ 401 (401)
T TIGR01885 385 TEEQLDEGLEIIKKVID 401 (401)
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 99999999999998875
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-14 Score=145.67 Aligned_cols=179 Identities=16% Similarity=0.169 Sum_probs=136.7
Q ss_pred hHHHHHHHHHHHHHhCC--CCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 178 SELESKIRKRIMDFMNI--SEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga--~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.++.+.+++.++.++|. +++ .+|..|.|+.++|..++.++ +.+||+|+...+++-.+++. . +..|++.++++
T Consensus 72 p~L~~aL~k~~se~~~~~~~~~-~eVlVT~GA~~ai~~~~~~l-~~~GDeVii~eP~fd~Y~~~-~---~maG~tpv~v~ 145 (420)
T KOG0257|consen 72 PQLRKALAKAYSEFYGGLLDPD-DEVLVTAGANEAISSALLGL-LNPGDEVIVFEPFFDCYIPQ-V---VMAGGTPVFVP 145 (420)
T ss_pred hHHHHHHHHHHHHHhccccCCc-ccEEEecCchHHHHHHHHHH-cCCCCEEEEecCcchhhhhH-H---hhcCCcceeec
Confidence 57888899999998874 233 35999999999999888888 99999977665655435443 2 44699999998
Q ss_pred cc-------CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCC-C-c
Q 037063 256 FA-------WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDAT-A-L 322 (588)
Q Consensus 256 ~~-------~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa-~-~ 322 (588)
.. .+++.+|.++++.+++ ++|++|+++.++||||..++-++ | ++|++||++||.|.+ . +
T Consensus 146 ~~~~~g~~~s~~~~~D~~~le~~~t--------~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~ 217 (420)
T KOG0257|consen 146 LKPKEGNVSSSDWTLDPEELESKIT--------EKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWL 217 (420)
T ss_pred cccccccccCccccCChHHHHhhcc--------CCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHH
Confidence 87 4567899999999999 88999999999999999999666 5 889999999999997 1 1
Q ss_pred C--C---CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCC
Q 037063 323 G--S---KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGS 371 (588)
Q Consensus 323 ~--~---~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~ 371 (588)
+ + +....+ ...+..-+-+.|+.|.||+-.-.+|+++..+.++..+.+.
T Consensus 218 v~d~~~h~r~asl-Pgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~~~~v 270 (420)
T KOG0257|consen 218 VYDGNKHIRIASL-PGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLYSALFPV 270 (420)
T ss_pred hhCCCcceeeecC-CchhheEEEeccccceeeeeeeeeeeeechHHhhhhHHHH
Confidence 1 2 111122 2334456788999999994333499999977766555443
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-13 Score=143.34 Aligned_cols=330 Identities=14% Similarity=0.082 Sum_probs=198.6
Q ss_pred CCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+.-|||..+ .|.-.+.+.+++.+.+......++ . . ..+...+
T Consensus 34 dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~------------------------~--~-----~~~~~~~ 82 (395)
T PRK03715 34 NGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSP------------------------A--F-----YNEPMAK 82 (395)
T ss_pred CCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccccc------------------------c--c-----cCHHHHH
Confidence 5788999764 566678888887666532111110 0 0 0233344
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C----CCC-CeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F----YSN-PRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~----~~g-d~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
+-+++.+..+. ..++|++++++|+..++.... + ++| ++|+ ....||......+ ......+....+.|.
T Consensus 83 la~~l~~~~~~----~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~-~~s~~~~~~~~~~~~ 157 (395)
T PRK03715 83 LAGLLTQHSCF----DKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATM-SASGKPGWDTIFAPQ 157 (395)
T ss_pred HHHHHhhccCC----CEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHH-hhcCCcccccCCCCC
Confidence 45555443322 249999999999887776542 1 123 3454 5666776444332 221111111111111
Q ss_pred cCC---CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCcC-C---
Q 037063 257 AWP---NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATALG-S--- 324 (588)
Q Consensus 257 ~~~---~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~~-~--- 324 (588)
... ....+.+++++.+. +++.+|++..++...|.+.| +++| ++|+++|+++|+|.++.. +
T Consensus 158 ~~~~~~~~~~d~~~l~~~l~--------~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG 229 (395)
T PRK03715 158 VPGFPKAELNDIASVEKLIT--------DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTG 229 (395)
T ss_pred CCCceeeCCchHHHHHHHcC--------CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCc
Confidence 100 00136788888886 57899999999999999988 8889 999999999999999763 2
Q ss_pred C--CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccC
Q 037063 325 K--DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKF 402 (588)
Q Consensus 325 ~--d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~ 402 (588)
. -...+++ .||++++ -|.+|. ...+|++++++++.. +.+... .
T Consensus 230 ~~~a~~~~gv---~PDi~t~--gK~lg~-G~p~~av~~~~~i~~-~~~~~~----------------------------~ 274 (395)
T PRK03715 230 TLFAYELSGI---EPDIMTL--GKGIGG-GVPLAALLAKAEVAV-FEAGDQ----------------------------G 274 (395)
T ss_pred chhhHhhcCC---CCceeee--hhhhhC-CcceEEEEEcccccc-ccCCCc----------------------------C
Confidence 1 0122333 4898665 496663 234888888888742 111111 1
Q ss_pred CCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeec
Q 037063 403 PESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFD 482 (588)
Q Consensus 403 GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~ 482 (588)
+|.+-..+ ..++..++|+.+++ +.+.++++++.++|+++|+++.... ++..++ .+|.++.+.+.+
T Consensus 275 ~T~~g~pl-~~aaala~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~---~i~~vr--------G~Glm~~i~l~~ 339 (395)
T PRK03715 275 GTYNGNPL-MTAVGVAVISQLLA---PGFLEGVRARGEYLKEKLLELSEER---GLEGER--------GEGLLRALLLGK 339 (395)
T ss_pred CCCCCCHH-HHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhhcC---CcCeEE--------cceeEEEEEecC
Confidence 11111111 12444566777654 5678888999999999988763211 111111 356788887754
Q ss_pred CCCCCcCHHHHHHHHHhC---CcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHH
Q 037063 483 WNGTRIDPALVQKLADRH---NISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLW 559 (588)
Q Consensus 483 ~~g~~i~~~~v~~~l~~~---gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li 559 (588)
. ....+.+.+.+. ||.+... +.+.||+++....|.+||++++
T Consensus 340 ~-----~~~~~~~~~~~~~~~Gi~~~~~------------------------------~~~~lR~~p~l~~t~~ei~~~~ 384 (395)
T PRK03715 340 D-----IGPQIVEKARDMQPDGLLLNAP------------------------------RPNLLRFMPALNVTTEEIDQMI 384 (395)
T ss_pred c-----hHHHHHHHHHhccCCCEEEeec------------------------------CCCEEEEeCCcccCHHHHHHHH
Confidence 2 134455556656 8887421 1128999999999999999999
Q ss_pred HHHHHhhhh
Q 037063 560 AFVSRFLDA 568 (588)
Q Consensus 560 ~~l~~~l~~ 568 (588)
+.|++.+++
T Consensus 385 ~~l~~~l~~ 393 (395)
T PRK03715 385 AMLRSVLDK 393 (395)
T ss_pred HHHHHHHHh
Confidence 999998764
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.4e-13 Score=126.73 Aligned_cols=314 Identities=12% Similarity=0.089 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc-
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA- 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~- 257 (588)
.-+.+..+.+++|+|+| .+-+|.|+-+|=..+..++ -++||-|+.+...|-+++ -.|++.|..|..||-.
T Consensus 61 PpI~~F~~dlaeFlg~D----~~R~t~GARe~KfavMhal-~~~gd~vV~D~~aHYtty----vAAEragl~v~eVp~tg 131 (382)
T COG1103 61 PPIKDFLEDLAEFLGMD----EVRVTAGAREAKFAVMHAL-CKEGDWVVVDSLAHYTTY----VAAERAGLNVAEVPNTG 131 (382)
T ss_pred CcHHHHHHHHHHHhCCc----eeeecccchhhHHHHHHHh-ccCCCEEEEcCcchHHHH----HHHHhcCCeEEecCCCC
Confidence 34556777799999995 3889999999999999999 789999776654442232 2467889999999964
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFK 336 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~ 336 (588)
.|+..+++|...+.|++- .......+.|..++|+....|.+.|.+.+ ++|+++|+++++.+|-.++ ..++.....+
T Consensus 132 ~Pey~i~~e~y~~viee~-~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~G--rmpvs~ke~g 208 (382)
T COG1103 132 YPEYKITPEGYAEVIEEV-KDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVG--RMPVSGKEIG 208 (382)
T ss_pred CCceEecHHHHHHHHHHH-HhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeec--cccccccccC
Confidence 367889999999998741 11222568999999999999999999999 9999999999999997776 2334444455
Q ss_pred CcEEEeccCc-cCCCCCCceEEEEEeCcchhcc-cCCCCCCCceEeeecCCCcccccccccccccccCC-CCCccchhhH
Q 037063 337 PDFLICSFYK-IFGENPSGFGCLFVKKSSASVL-SGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP-ESSISGVSSK 413 (588)
Q Consensus 337 ~D~vv~S~~K-~~G~~P~G~G~L~v~~~~~~~l-~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G-T~~~~~~~~~ 413 (588)
+||++.|+|| |-.. .-+|+|-++.+..+.. +..-.. .... .++ -.| |.-=.. +
T Consensus 209 ~DFiVgSGHKsmAAs--~PiGvl~~~eE~ae~V~r~Sg~~--~~~K---------Eve--------llGCT~rGap---i 264 (382)
T COG1103 209 ADFIVGSGHKSMAAS--APIGVLAMSEEWAEIVLRRSGRA--FPKK---------EVE--------LLGCTVRGAP---I 264 (382)
T ss_pred CCEEEecCccchhcc--CCeeEEeehhHHHHHHHhhcccc--cccc---------eee--------eecccccCch---H
Confidence 9999999999 4443 2389999999887643 222100 0000 000 012 211111 2
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHH
Q 037063 414 LVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALV 493 (588)
Q Consensus 414 ~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v 493 (588)
..+.+.+-++.+. -+......+-++|+.+.|.++ .+++..|.+. .+--++-|..+. ..++
T Consensus 265 vTlmASfP~V~eR--VkrWdeEv~kaR~fv~elEki---------gg~~qlG~rP--k~HdLm~Fetp~-------f~eI 324 (382)
T COG1103 265 VTLMASFPHVVER--VKRWDEEVEKARWFVAELEKI---------GGVKQLGERP--KNHDLMKFETPV-------FHEI 324 (382)
T ss_pred HHHHhcCHHHHHH--HHHHHHHHHHHHHHHHHHHHh---------hhHHHhCCCC--cccceeeecCch-------HHHH
Confidence 3444555555432 222333345678999999986 3566666432 223455555433 2233
Q ss_pred HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCcc-EEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 494 QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVS-VVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 494 ~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~-~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.+...+.|..+- ..|..+..- .-..|.. .+.+|. +-.+.|+|+..++++++++++
T Consensus 325 akk~~r~gyFlY------------------~ELK~RgI~-GI~~G~Tk~~K~sv-yGl~~Eqve~V~~afkeI~ek 380 (382)
T COG1103 325 AKKHKRKGYFLY------------------EELKKRGIH-GIQPGQTKYFKLSV-YGLSWEQVEYVVDAFKEIAEK 380 (382)
T ss_pred HHhCcCCceeeH------------------HHHHhcCcc-ccccCceeEEEEEe-ecCCHHHHHHHHHHHHHHHHh
Confidence 332223333221 111111000 0012222 788886 334889999999999998765
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.2e-13 Score=140.64 Aligned_cols=326 Identities=10% Similarity=0.109 Sum_probs=193.3
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|||..+. |.-++.+.+++.+.+..... . +... ..+...+
T Consensus 27 ~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~--~------------------------~~~~-----~~~~~~~ 75 (377)
T PRK02936 27 NGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWH--V------------------------SNLF-----TNSLQEE 75 (377)
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccc--c------------------------cccc-----CCHHHHH
Confidence 57789997554 66778888888766632100 0 0000 0234445
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCC-CeEE-EcCCCchhHHHHHHHHHHhcCC---------EEE
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSN-PRLL-TVYDHENEAAALMIESSKKRGA---------RVS 252 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~g-d~ll-~~~e~~s~~~~~~~~~a~~~G~---------~v~ 252 (588)
+.+++.+..+. + .++|++++++|+..++......+| ++|+ ....||...+.++. ....... .+.
T Consensus 76 la~~l~~~~~~--~--~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~-~~~~~~~~~~~~~~~~~~~ 150 (377)
T PRK02936 76 VASLLAENSAG--D--LVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMS-ATGQEKIKEGFGPLLPGFT 150 (377)
T ss_pred HHHHHHhcCCC--C--EEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhh-ccCCccccccCCCCCCCce
Confidence 55555554443 2 499999999999888774322244 4455 55667754444432 1110000 112
Q ss_pred EEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCcC-CCC
Q 037063 253 SAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATALG-SKD 326 (588)
Q Consensus 253 ~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~~-~~d 326 (588)
.++.+ |++++++.+. +++++|++..+++..|...+ +++| ++|+++|+++|+|.++.. +..
T Consensus 151 ~~~~~------d~~~l~~~~~--------~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~ 216 (377)
T PRK02936 151 HVPFN------DIKALKEVMN--------EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRT 216 (377)
T ss_pred EeCCC------CHHHHHHhcc--------CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC
Confidence 22221 6788988887 67899999999998887754 7778 999999999999999642 211
Q ss_pred CCCCC--CCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 327 MDTLG--LSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 327 ~~~l~--l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
-..+. .....+|++ ++.|.+|. ...+|+++.++++.+.+...... . ..+.
T Consensus 217 g~~~~~~~~~~~~di~--t~sK~l~~-G~~ig~v~~~~~~~~~~~~~~~~--~-----------------------t~~~ 268 (377)
T PRK02936 217 GTLFAYEQFGLDPDIV--TVAKGLGN-GIPVGAMIGKKELGTAFGPGSHG--S-----------------------TFGG 268 (377)
T ss_pred chhhHHHhhCCCCcEE--EEcccccC-CCccEEEEEcHHHHhhccCCCCC--C-----------------------CCCC
Confidence 01111 111236754 68998872 22388999888876655432211 0 0111
Q ss_pred CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCC
Q 037063 405 SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWN 484 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~ 484 (588)
+++. .++..++|+.+.. +...++++...+++++.|.++.. +.+.+..+. ..|.++.+.+.+
T Consensus 269 ~~~~----~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~-----~~~~~~~v~-----~~g~~~~i~~~~-- 329 (377)
T PRK02936 269 NPLA----MAAAKEVLQVIKQ---PSFLEEVQEKGEYFLQKLQEELE-----HLECVKNIR-----GKGLMIGIECTE-- 329 (377)
T ss_pred CHHH----HHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh-----hCCcEEeEe-----ecceEEEEEecc--
Confidence 1111 1455566666532 23445556666666666655200 022222111 235566666654
Q ss_pred CCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 485 GTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 485 g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
+...+.+.|.++||.+..+ |...||++++...+.+||+++++.|.+
T Consensus 330 ----~~~~~~~~l~~~gv~v~~~------------------------------g~~~lRi~p~~~~~~~~i~~~i~~l~~ 375 (377)
T PRK02936 330 ----EVAPVIEQLREEGLLVLSA------------------------------GPNVIRLLPPLVVTKEELDQAVYLLKK 375 (377)
T ss_pred ----hHHHHHHHHHHCCeEEecC------------------------------CCCEEEEECCcccCHHHHHHHHHHHHH
Confidence 1456777888899987542 112899999999999999999999987
Q ss_pred hh
Q 037063 565 FL 566 (588)
Q Consensus 565 ~l 566 (588)
+|
T Consensus 376 ~~ 377 (377)
T PRK02936 376 VL 377 (377)
T ss_pred hC
Confidence 54
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-13 Score=145.09 Aligned_cols=181 Identities=12% Similarity=0.056 Sum_probs=125.3
Q ss_pred HHHHHHHHHh----CCCCCCceEEEecCHHHHHHHHHHhCCC-CCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 183 KIRKRIMDFM----NISEDDYTLVFTANQSSAFKLLAESYPF-YSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 183 ~~r~~ia~~l----ga~~~e~~vvft~g~T~al~lv~~s~~~-~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++|+.|++++ |.+-+..+|++|+|+++|+.+++.++ + ++||+|++....+..+ ...++..|++++.++++
T Consensus 111 ~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l-~~~pGd~Vli~~P~Y~~y----~~~~~~~g~~~v~v~~~ 185 (407)
T PLN02368 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAV-IRGEKDGVLVPVPQYPLY----SATISLLGGTLVPYYLE 185 (407)
T ss_pred HHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHH-cCCCCCEEEEeCCCCccH----HHHHHHcCCEEEEEecc
Confidence 5666666665 64322335999999999999999988 6 6999977665544322 34456789999999986
Q ss_pred CC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCC--cC--CC-CC
Q 037063 258 WP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATA--LG--SK-DM 327 (588)
Q Consensus 258 ~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~--~~--~~-d~ 327 (588)
.+ +..++.++|++.++.. +.+..++++++++.++||||..++.+++ ++|+++|++||.|.+- +. +. ..
T Consensus 186 ~~~~~~~d~~~le~~i~~~--~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~ 263 (407)
T PLN02368 186 ESENWGLDVNNLRQSVAQA--RSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPF 263 (407)
T ss_pred cccCCCCCHHHHHHHHHHH--hhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCc
Confidence 32 3578999999998720 0111378999999999999999998875 6789999999999972 21 10 01
Q ss_pred CC---C--CCC----CCCCcEEEeccCccC-CCCCCceEEEEE---eCcchhcccC
Q 037063 328 DT---L--GLS----LFKPDFLICSFYKIF-GENPSGFGCLFV---KKSSASVLSG 370 (588)
Q Consensus 328 ~~---l--~l~----~~~~D~vv~S~~K~~-G~~P~G~G~L~v---~~~~~~~l~~ 370 (588)
.+ + ++. ....-+++.||+|.| |++..++|++++ ++++++.+..
T Consensus 264 ~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~ 319 (407)
T PLN02368 264 ISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYK 319 (407)
T ss_pred ccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHH
Confidence 11 0 110 111236778999976 754567999985 6666665543
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-12 Score=137.57 Aligned_cols=288 Identities=13% Similarity=0.126 Sum_probs=170.1
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEE-EcCCCchhHHHHHHHHHHh------cCCEEEEE
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLL-TVYDHENEAAALMIESSKK------RGARVSSA 254 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll-~~~e~~s~~~~~~~~~a~~------~G~~v~~v 254 (588)
+.++.+++.+...++ ..++|++++|+|+..++.... +..+++|+ ....||......+ ..... .+..+..+
T Consensus 70 ~~~~~la~~l~~~~~-~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~-~~~~~~~~~~~~~~~~~~~ 147 (375)
T PRK04260 70 SLQEEVAQKLIGDKD-YLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSM-SATGQDKIKDGFGDGVPHF 147 (375)
T ss_pred HHHHHHHHHHhcCcC-CEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHH-hccCCcccCCCCCCCCCCe
Confidence 455666665544333 246899999999886666431 23345555 5667775343332 11100 01111111
Q ss_pred eccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCcC-CCC--
Q 037063 255 EFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATALG-SKD-- 326 (588)
Q Consensus 255 ~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~~-~~d-- 326 (588)
+.. ...|.+++++.+. +++.+|++..+++.+|.+.| +++| ++|+++|+++++|+++.. +..
T Consensus 148 ~~~---~~~dl~~l~~~l~--------~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~ 216 (375)
T PRK04260 148 SYA---IFNDLNSVKALVN--------KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGK 216 (375)
T ss_pred EEe---CCCCHHHHHHhcC--------CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc
Confidence 110 0136788888776 57899999999999999877 7888 999999999999999642 211
Q ss_pred CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 327 MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 327 ~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
.-........+|++ ++.|.+|. ...+|++++++++.+.+...... + ..+..+
T Consensus 217 ~~~~~~~~~~pdi~--t~sK~l~~-G~~ig~~~~~~~~~~~~~~~~~~--~-----------------------t~~~~~ 268 (375)
T PRK04260 217 LYAFEHYGIEPDIF--TLAKGLAN-GVPVGAMLAKSSLGGAFGYGSHG--S-----------------------TFGGNK 268 (375)
T ss_pred hhhhHhhCCCCCEE--EecccccC-CcceEEEEEcHHHHhhcCCCCCC--C-----------------------CCCcCH
Confidence 11111112348844 79997772 23489999998876655432111 0 001111
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCCCCcccEEEEEeecCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVMFDRGPSLAFNVFDWNG 485 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~~~rg~iv~f~~~~~~g 485 (588)
+ . .++..+.|+.+.. +.+.++++...+.+++.|.++-.. .+.+ .+- ..|.++.+.+.
T Consensus 269 ~-~---~~aa~a~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~------~~g~~~~~~~~---- 326 (375)
T PRK04260 269 L-S---MAAASATLDIMLT---AGFLEQALENGNYLQEQLQKALQD-----KETVTTVR------GLGYMIGIETT---- 326 (375)
T ss_pred H-H---HHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHhh-----CCCeeEEe------ccceEEEEEec----
Confidence 1 1 1344455555443 345556666666666655543100 1111 111 13556666552
Q ss_pred CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 486 TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 486 ~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
.+...+.+.+.++||.+.++ +...||++++...+.+||+++++.|++.
T Consensus 327 --~~~~~~~~~l~~~Gi~v~~~------------------------------~~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 327 --ADLSQLVEAARDKGLIVLTA------------------------------GTNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred --CcHHHHHHHHHhCCCEEecC------------------------------CCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 23567788888899988542 1128999999999999999999998765
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-12 Score=137.00 Aligned_cols=329 Identities=12% Similarity=0.076 Sum_probs=203.7
Q ss_pred CCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+.-|+|..+ .|.-.+.+.+++.+.+...... . ... ..+...+
T Consensus 33 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~-~---------------------~~~---------~~~~~~~ 81 (397)
T TIGR03246 33 QGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHI-G---------------------NGY---------TNEPVLR 81 (397)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccc-c---------------------Ccc---------CCHHHHH
Confidence 5778999866 5677788888886665321100 0 000 1344568
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-----CCCC-eEE-EcCCCchhHHHHHHHHHHhc--------
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-----YSNP-RLL-TVYDHENEAAALMIESSKKR-------- 247 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-----~~gd-~ll-~~~e~~s~~~~~~~~~a~~~-------- 247 (588)
+.++++++++. + .+.|++++++|+..++.... + .+|. +|+ ....||......+ ......
T Consensus 82 la~~L~~~~~~--~--~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~-~~~~~~~~~~~~~~ 156 (397)
T TIGR03246 82 LAKKLVDATFA--D--KVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTV-SVGGQPKYSQGFAP 156 (397)
T ss_pred HHHHHHhhCCC--C--EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHH-HhcCCcccccCCCC
Confidence 88999998865 2 49999999999887777531 1 1233 344 5666776443222 221100
Q ss_pred -CCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccC-C---HHHH-HHHHHcCcEEEEeCCC
Q 037063 248 -GARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARY-S---YMWM-SVAAEKGWHVLLDATA 321 (588)
Q Consensus 248 -G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~-p---l~~I-~~a~~~g~~vvvDaa~ 321 (588)
...+..++. -|.+++++.|. +++++|++..+++..|... | +++| ++|+++|+++|+|.++
T Consensus 157 ~~~~~~~~~~------~d~~~l~~~l~--------~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~ 222 (397)
T TIGR03246 157 LPGGIKHAPY------NDLAAAKALIS--------DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ 222 (397)
T ss_pred CCCceEEeCC------CCHHHHHHHhc--------cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 012233333 26789998887 6789999998888888765 3 6667 8999999999999996
Q ss_pred cC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccc
Q 037063 322 LG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLD 395 (588)
Q Consensus 322 ~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~ 395 (588)
.. +. ....++ ..||++ ++.|.+|. ..-+|++++++++++.+.....+ .
T Consensus 223 tG~Gr~G~~~a~~~~g---v~pDi~--t~~K~lgg-G~pigav~~~~~i~~~~~~~~~~--~------------------ 276 (397)
T TIGR03246 223 TGVGRTGELYAYMHYG---VTPDIL--TSAKALGG-GFPIGAMLTTTEIAAHLKVGTHG--T------------------ 276 (397)
T ss_pred hcCCccccchhhhhcC---CCCCEE--EeehhhhC-CcceeEEEEcHHHHHhccCCCcC--C------------------
Confidence 32 11 012223 248876 67896652 23489999998887766432211 0
Q ss_pred ccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE
Q 037063 396 ESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS 475 (588)
Q Consensus 396 ~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i 475 (588)
.| .| +..+ .++..++|+.+.+ +++.++.+.+.+++.+.|+++... .+.+.-+ ...|.+
T Consensus 277 --t~--~~--~p~~---~aaa~a~l~~~~~---~~l~~~~~~~~~~l~~~L~~l~~~-----~~~~~~v-----rg~G~~ 334 (397)
T TIGR03246 277 --TY--GG--NPLA---CAVAGKVLDLVNT---PELLAGVKQRHDLFVDGLEKINAR-----YNVFSEI-----RGKGLL 334 (397)
T ss_pred --CC--CC--CHHH---HHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhc-----CCCeEee-----ecCceE
Confidence 01 01 1111 2344466666543 567888889999999999886311 1211111 123556
Q ss_pred EEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHH
Q 037063 476 LAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDT 555 (588)
Q Consensus 476 v~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv 555 (588)
+.+.+.+... -....+.+.|.++||.+... |.++||+++.+..|.+||
T Consensus 335 ~~i~~~~~~~--~~~~~~~~~l~~~Gv~~~~~------------------------------g~~~lR~~p~~~~t~~~i 382 (397)
T TIGR03246 335 IGAVLTEAYQ--GKAKQFVNAAAEEGVIALIA------------------------------GPNVVRFAPSLVISDDDI 382 (397)
T ss_pred EEEEEcCchh--hHHHHHHHHHHHCCeEEeec------------------------------CCCEEEEeCCCCCCHHHH
Confidence 6665543100 12345667777789987531 123899999999999999
Q ss_pred HHHHHHHHHhhhh
Q 037063 556 YRLWAFVSRFLDA 568 (588)
Q Consensus 556 ~~li~~l~~~l~~ 568 (588)
+++++.|.+++++
T Consensus 383 ~~~~~~l~~~l~~ 395 (397)
T TIGR03246 383 DEGLARFERAIEQ 395 (397)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-12 Score=139.00 Aligned_cols=348 Identities=12% Similarity=0.043 Sum_probs=205.9
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+. |--.+.+.+++.+.+..-..... .. ...+...
T Consensus 39 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~---------------------~~---------~~~~~~~ 88 (423)
T PRK05964 39 ADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIF---------------------AG---------FTHEPAE 88 (423)
T ss_pred CCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccc---------------------cc---------cCCHHHH
Confidence 367889997654 66677888888666532111000 00 0134445
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-----CCCC-eEE-EcCCCchhHHHHHHHHHHhcC------
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-----YSNP-RLL-TVYDHENEAAALMIESSKKRG------ 248 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-----~~gd-~ll-~~~e~~s~~~~~~~~~a~~~G------ 248 (588)
++.+++.+.+.... +.|.|+.++++|+..+++... + ++|. +|+ ....||.....++ .+.....
T Consensus 89 ~la~~l~~~~p~~~--~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~l-s~~~~~~~~~~~~ 165 (423)
T PRK05964 89 RLAQRLVALTPGGL--DHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTM-SVGDRGGMHALYT 165 (423)
T ss_pred HHHHHHHHhCCCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHH-hcCCCcccccccc
Confidence 77778888764221 359999999998887665321 1 1344 355 5667776444332 2211100
Q ss_pred ---CEEEEEeccCCC-CccCHHHHHHHHhhhccccCCCcceEEEEeC-CCCCCCccCC----HHHH-HHHHHcCcEEEEe
Q 037063 249 ---ARVSSAEFAWPN-LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPL-QSKVTGARYS----YMWM-SVAAEKGWHVLLD 318 (588)
Q Consensus 249 ---~~v~~v~~~~~~-~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~-~sn~tG~~~p----l~~I-~~a~~~g~~vvvD 318 (588)
..+..+++...+ ...+.+++++.+.+ ..++...|++.- ++...|.+.| +++| ++|+++|+++|+|
T Consensus 166 ~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~-----~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~D 240 (423)
T PRK05964 166 PLLFEQVTAPFPPDGYEQATLDALEALLEK-----HAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFD 240 (423)
T ss_pred CcCCCCEEeCCCcchhHHHHHHHHHHHHHh-----CCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 123344442111 01126777777752 124566666665 5777898886 6678 9999999999999
Q ss_pred CCCc-CCCC--CCCCCCCCCCCcEEEeccCccCCCCC-CceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 319 ATAL-GSKD--MDTLGLSLFKPDFLICSFYKIFGENP-SGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 319 aa~~-~~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P-~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
.++. ++.. +-........||+++++ |.+|. + ..+|+++.++++.+.+...... +.
T Consensus 241 Ev~tg~gr~G~~~a~~~~~v~pDi~~~~--K~l~g-G~~p~~av~~~~~i~~~~~~~~~~--~~---------------- 299 (423)
T PRK05964 241 EIATGFGRTGTLFACEQAGVSPDIMCLS--KGLTG-GYLPLAATLCTAEIFEAFYSDDRA--KA---------------- 299 (423)
T ss_pred chhhCCCcCcchhHHHhcCCCCCeeeee--hhhhc-CcccceEEEEcHHHHHhhhcCCcc--cc----------------
Confidence 9974 2210 10001112348987654 97753 3 3588899998887766432100 00
Q ss_pred cccccccCCCC--CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc
Q 037063 395 DESSQSKFPES--SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR 472 (588)
Q Consensus 395 ~~~~f~e~GT~--~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r 472 (588)
.+ ..+|. +..+ +++..++|+.+.+ +.+.+++..+.+++++.|.++. +.+.+.-+ ...
T Consensus 300 ---~~-~~~T~~~np~~---~aaa~a~l~~l~~---~~~~~~~~~~g~~l~~~l~~l~------~~~~i~~v-----rg~ 358 (423)
T PRK05964 300 ---FM-HSPSYTANPLA---CAAANASLDLFED---EPVLERVAALSAGLAEGLEPFR------DLPGVADV-----RVL 358 (423)
T ss_pred ---cc-cCCCCCcCHHH---HHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHhhc------cCCCeEEe-----ecc
Confidence 00 12232 2222 2455567777665 4567888888999999888762 12333211 134
Q ss_pred ccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCH
Q 037063 473 GPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNF 552 (588)
Q Consensus 473 g~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~ 552 (588)
|.++.+.+.+.... -....+.+.|.++||.++.. . ..||+++++.+|.
T Consensus 359 Gl~~~i~l~~~~~~-~~~~~l~~~l~~~Gv~v~~~-----------------------------~--~~lR~~p~l~~t~ 406 (423)
T PRK05964 359 GAIGAVELDRPVLE-RDGPALRAFALERGVLLRPL-----------------------------G--NTIYLMPPYIITA 406 (423)
T ss_pred cEEEEEEeccCcch-hHHHHHHHHHHHCCeEEEec-----------------------------C--CEEEEeCCcccCH
Confidence 67778877542100 01445677777899987632 1 1899999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 037063 553 EDTYRLWAFVSRFLDA 568 (588)
Q Consensus 553 eDv~~li~~l~~~l~~ 568 (588)
+||+++++.+++.+++
T Consensus 407 edId~~v~~l~~al~~ 422 (423)
T PRK05964 407 EELDRITDAIVEVADE 422 (423)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998864
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-12 Score=132.28 Aligned_cols=297 Identities=13% Similarity=0.126 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEecCHH---HHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 180 LESKIRKRIMDFMNISEDDYTLVFTANQS---SAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 180 ~~~~~r~~ia~~lga~~~e~~vvft~g~T---~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
...++.+.+|++..-+. .++|++..- .-+..++.-+ ||-+|.++...|++.+.+++ ..+++-.....
T Consensus 217 ~hv~LE~eLA~LHqK~a---ALlFsSCfVANDstLftLak~l---pgcei~SD~gNHASMI~GIr----ns~v~K~IFrH 286 (570)
T KOG1360|consen 217 HHVRLEAELADLHQKEA---ALLFSSCFVANDSTLFTLAKKL---PGCEIFSDEGNHASMIQGIR----NSRVPKHIFRH 286 (570)
T ss_pred hhhhHHHHHHHHhcCcc---eeeeeeeeeccchHHHHHHHHC---CCcEEeccccchHHHHHHhh----hcCCcceeecc
Confidence 34588889999988753 378776542 2345555655 57778888877775554543 33443333332
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC------CCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK------DMDT 329 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~------d~~~ 329 (588)
-|+++|+++|. +..+..+|+|+|..+.+++|.+-|+++| ++|+++|++.++|.++.++. -+.+
T Consensus 287 ------ND~~hL~~lL~----~~~~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvge 356 (570)
T KOG1360|consen 287 ------NDLDHLEQLLQ----SSPKSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGE 356 (570)
T ss_pred ------CCHHHHHHHHH----hCCCCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccc
Confidence 27899999997 3444678999999999999999999999 99999999999999987751 0111
Q ss_pred CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 330 LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 330 l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
-+--..++|+|.+..-|.||. .| |++.....+++.++.+..| . +| |-+.+.
T Consensus 357 rdGvm~kvDiIsGTLgKafGc--VG-GYIAat~~LvDmiRSyAaG---F-------------------IF----TTSLPP 407 (570)
T KOG1360|consen 357 RDGVMHKVDIISGTLGKAFGC--VG-GYIAATRKLVDMIRSYAAG---F-------------------IF----TTSLPP 407 (570)
T ss_pred cCCcchhhhhcccchhhhccc--cc-ceehhhhhHHHHHHHhcCc---e-------------------EE----ecCCCh
Confidence 111235689999999999994 33 7777778888777655533 1 22 111111
Q ss_pred hhhHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 410 VSSKLVECKGLDHADAL-GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~-G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
. .+++...++++++.. | ..+++..+...+++++.|.++ |+|.+. ..+.|+...+.+.. .
T Consensus 408 ~-vl~GAleaVr~lk~~eg-~~lR~~hqrnv~~~kq~l~~~-------GiPVi~--------~pSHIiPv~vgda~---l 467 (570)
T KOG1360|consen 408 M-VLAGALEAVRILKSEEG-RVLRRQHQRNVKYVKQLLMEL-------GIPVIP--------NPSHIIPVRVGDAA---L 467 (570)
T ss_pred H-HHHhHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHc-------CCcccC--------CCcceeeeeccCHH---H
Confidence 1 024555677776553 3 233334455667888888886 665332 23578888887743 3
Q ss_pred CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 489 DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 489 ~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
....-..++.++||+|..-.+- .. ..|...+||.+...+|++-++.|++.|...-++
T Consensus 468 ~~~~sd~Li~~h~iYvQaINyP---------------TV--------~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~ 524 (570)
T KOG1360|consen 468 AKQASDILISKHNIYVQAINYP---------------TV--------ARGTERLRIAPTPHHTPQMMNILVNALLDVWNE 524 (570)
T ss_pred HHHHHHHHHHhcCeEEEeccCC---------------cc--------cccceeeecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3333456778999998653211 00 145559999999999999999999998765433
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-12 Score=132.49 Aligned_cols=274 Identities=17% Similarity=0.149 Sum_probs=195.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC---CC-CC-C--eEEEcCCCchhHHHHHHHHHHhcCCE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP---FY-SN-P--RLLTVYDHENEAAALMIESSKKRGAR 250 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~---~~-~g-d--~ll~~~e~~s~~~~~~~~~a~~~G~~ 250 (588)
.++..++-..++.+||++++ ..-.-|.|+|+++-+.-..+. .+ .| + ++++... ....+..+++..+.+
T Consensus 119 ~~~e~~~Vnm~~~L~~~~~~-~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~----v~~a~eK~a~yf~v~ 193 (491)
T KOG1383|consen 119 RKLEAECVNMIANLFNAPSD-SCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQN----VHAAFEKAARYFEVE 193 (491)
T ss_pred HHHHHHHHHHHHHHhcCCcc-ccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHH----HHHHHHHHHhhEEEE
Confidence 57888999999999999865 456677888888555444432 11 11 1 1444333 344457888889999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH-cCcEEEEeCCCcC---C-
Q 037063 251 VSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE-KGWHVLLDATALG---S- 324 (588)
Q Consensus 251 v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~-~g~~vvvDaa~~~---~- 324 (588)
++.||++..+.++|+.++.+.++ ++|.+++....+.++|.+-|+++| +++.+ +++++++|++... |
T Consensus 194 l~~V~~~~~~~~~D~~k~~~~i~--------eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~ 265 (491)
T KOG1383|consen 194 LREVPLDEGDYRVDPGKVVRMID--------ENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPA 265 (491)
T ss_pred EEeeeccccceEecHHHHHHHhc--------cceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccc
Confidence 99999998889999999999999 899999999999999999999999 88888 9999999998332 2
Q ss_pred --CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchh--c--ccCCCCCCCceEeeecCCCcccccccccccc
Q 037063 325 --KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSAS--V--LSGSTSSVSTIMGIEPSFSEIIELETLDESS 398 (588)
Q Consensus 325 --~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~--~--l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~ 398 (588)
.+..++|+..-.+--+.++.|| +|+.|.|+|+++-|.+-.. . ...-|.|| ... .+ .+ .
T Consensus 266 ~~~~~~~fdFr~p~V~Sisa~~HK-YGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg--~y~-s~------Tl------n 329 (491)
T KOG1383|consen 266 GYLNEEEFDFRVPGVTSISADGHK-YGLAPAGSSWVLYRNKELLPHQLFFHTDWLGG--IYA-SP------TL------N 329 (491)
T ss_pred cccCccccccCCCCceeEeeccce-eeeeecCcEEEEEcccccccceEEEeccccCc--ccc-Cc------cc------c
Confidence 2244667666667779999999 5544999999887765321 1 12223332 100 00 00 1
Q ss_pred cccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEE
Q 037063 399 QSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAF 478 (588)
Q Consensus 399 f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f 478 (588)
|+..| ..+ ++..+++-.+-..|..+..+.+...+..|++++.+ ++.+.|+++ |.++|
T Consensus 330 gSR~g----~~v---a~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~---------i~~i~i~gk-------p~vs~ 386 (491)
T KOG1383|consen 330 GSRPG----SQV---AAQWAALMSLGEEGYRENTQNIVETARKLREGIEN---------IKGIKIVGK-------PLVSF 386 (491)
T ss_pred cCCcc----cHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhc---------cccceecCC-------CcEEE
Confidence 11122 122 44445666666667888888899999999999998 478999986 66777
Q ss_pred EeecCCCCCcCHHHHHHHHHhCCcEec
Q 037063 479 NVFDWNGTRIDPALVQKLADRHNISLS 505 (588)
Q Consensus 479 ~~~~~~g~~i~~~~v~~~l~~~gI~v~ 505 (588)
...+.+. ++-.++..+|.+.|..+-
T Consensus 387 ~~~~s~~--~~i~elsd~l~~~GW~ln 411 (491)
T KOG1383|consen 387 ILFGSND--VNIFELSDLLRKKGWILN 411 (491)
T ss_pred EEccCCc--cchhhhhHHHHhcCcCcc
Confidence 7776443 666778899999988764
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-12 Score=132.71 Aligned_cols=306 Identities=18% Similarity=0.175 Sum_probs=199.1
Q ss_pred HHHHHHHHHHhC------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 182 SKIRKRIMDFMN------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 182 ~~~r~~ia~~lg------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
...|+.+|+|+. ++-+...||.|.|+|.|++.++-.+ -.|||..+++.+|.... -+.+.-+.|++++.|.
T Consensus 124 ~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcL-adpgdafLvPtPyY~gf---drdl~~rTgveivpv~ 199 (471)
T KOG0256|consen 124 PSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCL-ADPGDAFLVPTPYYPGF---DRDLRWRTGVEIVPVH 199 (471)
T ss_pred hHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHh-cCCCceeeecCCCCCcc---cccceeccCceEEEEE
Confidence 367777777763 2223334999999999999999998 78999988777765422 2444456899999999
Q ss_pred ccCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcCCC-----
Q 037063 256 FAWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALGSK----- 325 (588)
Q Consensus 256 ~~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~~~----- 325 (588)
+... +.+++.+.|+.++.+. ++...+.+=|++++++||.|+.++-+++ ..|.+++++||+|..-+..+
T Consensus 200 c~Ss~~f~itv~alE~A~~~A--~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~ 277 (471)
T KOG0256|consen 200 CSSSNGFQITVEALEAALNQA--RKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSE 277 (471)
T ss_pred eecCCCccccHHHHHHHHHHH--HHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccC
Confidence 8754 4579999999999842 3344677889999999999999998885 67889999999998733310
Q ss_pred --CC----CCCCCCCCCCc--EEEeccCccCCCCCCceEEEEEeCcch-hcccCC-CCCCCceEeeecCCCccccccccc
Q 037063 326 --DM----DTLGLSLFKPD--FLICSFYKIFGENPSGFGCLFVKKSSA-SVLSGS-TSSVSTIMGIEPSFSEIIELETLD 395 (588)
Q Consensus 326 --d~----~~l~l~~~~~D--~vv~S~~K~~G~~P~G~G~L~v~~~~~-~~l~~~-~~g~~g~v~~~~~~~~~~~~~~~~ 395 (588)
.+ ....+ .+| -++.|..|=||.+.-.+|++|..++.. ....+. .++ .++
T Consensus 278 F~Sv~ev~~~~~~---~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~---~vS--------------- 336 (471)
T KOG0256|consen 278 FRSVLEVRKDPHL---DPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFG---LVS--------------- 336 (471)
T ss_pred ceEHHHHhhcccc---CCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhcc---CCc---------------
Confidence 00 11111 133 478899999997556699999887643 222222 121 111
Q ss_pred ccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE
Q 037063 396 ESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS 475 (588)
Q Consensus 396 ~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i 475 (588)
+..+.. ++.+..--++.+.. +.+..+|++.--+++.++|+++ |+|-++ ..+++
T Consensus 337 ----------s~tQ~~-la~LLSD~~f~~~y-l~en~~Rl~~rh~~~~~gLk~l-------gI~cl~--------s~AGl 389 (471)
T KOG0256|consen 337 ----------SQTQYL-LASLLSDEEFTREY-LRENNKRLRIRHRYIVEGLKAL-------GIPCLK--------SNAGL 389 (471)
T ss_pred ----------HHHHHH-HHHHhchHHHHHHH-HHHHHHHHHHHHHHHHhhHHhc-------CCceee--------cCCee
Confidence 111110 12222222233333 6777888888889999999998 666443 34566
Q ss_pred EEEE-eec--CCCCCcCH--HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC
Q 037063 476 LAFN-VFD--WNGTRIDP--ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT 550 (588)
Q Consensus 476 v~f~-~~~--~~g~~i~~--~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~ 550 (588)
..+. +.. .+.. ... +...+++++-++.+++|..|+ | ...| +.|+.|.-+
T Consensus 390 F~wvDlr~lL~s~t-fe~El~Lw~~i~~~vklnlSpG~s~~--------------------C--~EpG--WFRvcFAn~- 443 (471)
T KOG0256|consen 390 FCWVDLRKLLTSLT-FEGELELWERILDNVKLNLSPGSSCH--------------------C--HEPG--WFRVCFANM- 443 (471)
T ss_pred EEEEEhHHhcCcCC-hHHHHHHHHHHHHhhccccCCCCcce--------------------e--cCCC--eEEEEeccC-
Confidence 6653 211 0111 222 235677787799999997663 0 0245 999996532
Q ss_pred CHHHHHHHHHHHHHhhh
Q 037063 551 NFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 551 t~eDv~~li~~l~~~l~ 567 (588)
.++.++-.++.|+.|++
T Consensus 444 ~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 444 SEETLEVAMRRLKQFLD 460 (471)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 33445547888888877
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=127.53 Aligned_cols=295 Identities=13% Similarity=0.027 Sum_probs=197.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
.++...+..+||+|.+-. + .++-+++-.|..-+.+++ +.|.|-|+++.-.|++++.+ ..+|++++
T Consensus 111 q~iHk~LE~kiAqfh~rE---D-~ilypscfdANag~feai-l~pedAvfSDeLNhASIIdG-irLckry~--------- 175 (417)
T KOG1359|consen 111 QDIHKLLESKIAQFHGRE---D-TILYPSCFDANAGAFEAI-LTPEDAVFSDELNHASIIDG-IRLCKRYR--------- 175 (417)
T ss_pred hHHHHHHHHHHHHHhCCC---c-eEEeccccccchHHHHHh-cChhhhhhccccccchhhhh-hHHHhhhc---------
Confidence 578889999999999873 2 444455555556666777 78888888887777778888 46777443
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC-------CCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK-------DMDT 329 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~-------d~~~ 329 (588)
.+|.-+++..+.+ ..+.+.+||+...+-++.|-+.|+++| ++++++|.++++|.++..++ .-+.
T Consensus 176 ----h~dv~~l~~~l~~----a~k~r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~ 247 (417)
T KOG1359|consen 176 ----HVDVFDLEHCLIS----ACKMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEE 247 (417)
T ss_pred ----cchhHHHHHHHHH----hhhheEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHH
Confidence 2344556655541 223678999999999999999999999 99999999999999976531 0122
Q ss_pred CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 330 LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 330 l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
++. .-++|++.....|.+| ..-.|+....+.+++.|+..... . .|+..=-|.+.+
T Consensus 248 ~~v-m~~vdiinsTLgKAlG--ga~GGyttgp~~li~llrqr~Rp---------------------y-lFSnslppavV~ 302 (417)
T KOG1359|consen 248 FGV-MGDVDIINSTLGKALG--GASGGYTTGPKPLISLLRQRSRP---------------------Y-LFSNSLPPAVVG 302 (417)
T ss_pred hCC-CCcceehhhhhhhhhc--CCCCCCccCChhHHHHHHhcCCc---------------------e-eecCCCChhhhh
Confidence 232 2348999999999888 22348888888877655432110 0 220000011111
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcC
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRID 489 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~ 489 (588)
...++++.+-. -..+..+.....+++++.+.. .++.|-+.. -||..+.+.+.. -
T Consensus 303 -----~a~ka~dllm~--s~~~i~~~~a~~qrfr~~me~----------aGftIsg~~-----hPI~pv~lGda~----l 356 (417)
T KOG1359|consen 303 -----MAAKAYDLLMV--SSKEIQSRQANTQRFREFMEA----------AGFTISGAS-----HPICPVMLGDAR----L 356 (417)
T ss_pred -----hhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHh----------cCceecCCC-----CCccceecccHH----H
Confidence 22356665533 366777888889999998876 468887632 367777776621 1
Q ss_pred HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 490 PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 490 ~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
.....+.+-+.||+|-.-.. | .. ..|...|||.+...+|+||||++++++.+..+..
T Consensus 357 A~~~ad~lLk~Gi~Vigfs~--P-------------vV--------P~gkariRVqiSAaHt~edid~~i~Af~~vgr~~ 413 (417)
T KOG1359|consen 357 ASKMADELLKRGIYVIGFSY--P-------------VV--------PKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFL 413 (417)
T ss_pred HHHHHHHHHhcCceEEeecC--C-------------cC--------CCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhh
Confidence 33455666678998753211 0 00 1344489999999999999999999998876643
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-11 Score=133.25 Aligned_cols=387 Identities=13% Similarity=0.044 Sum_probs=225.3
Q ss_pred eeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHh
Q 037063 113 VCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFM 192 (588)
Q Consensus 113 vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~l 192 (588)
-|+-|.-+.+.+.+++-.+...+. |++-. .|+ .+ -....++.++-+.+++++
T Consensus 85 ry~ghm~~~~~~paila~~~a~~~-----N~n~~-----~~e----------~S--------P~~t~lE~~vi~~la~l~ 136 (608)
T TIGR03811 85 RYWGHMNSETLMPAILAYNYAMLW-----NGNNV-----AYE----------SS--------PATSQMEEEVGKEFATLM 136 (608)
T ss_pred ceEEECcCCCCHHHHHHHHHHHHh-----CCCCC-----ccc----------cC--------chHHHHHHHHHHHHHHHh
Confidence 588888888888887766543332 22100 011 01 113788999999999999
Q ss_pred CCCCCCceEEEecCHHHHHHH---HHHh---CCC--C-------------------------------------------
Q 037063 193 NISEDDYTLVFTANQSSAFKL---LAES---YPF--Y------------------------------------------- 221 (588)
Q Consensus 193 ga~~~e~~vvft~g~T~al~l---v~~s---~~~--~------------------------------------------- 221 (588)
|.++. .-+||+|+|.|+-. +++. +|+ +
T Consensus 137 G~~~~--~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~ 214 (608)
T TIGR03811 137 GYKNG--WGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSAR 214 (608)
T ss_pred CCCCC--CeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccc
Confidence 99754 37799999998643 3322 110 0
Q ss_pred CCC------eEEEcCC-CchhHHHHHHHHHHhcCC---EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeC
Q 037063 222 SNP------RLLTVYD-HENEAAALMIESSKKRGA---RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPL 291 (588)
Q Consensus 222 ~gd------~ll~~~e-~~s~~~~~~~~~a~~~G~---~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~ 291 (588)
+|. +++++.. |+| | .+.|.-.|. .|+.||++ +++++|+++|++.|.+. ......+-.|+.+.
T Consensus 215 ~g~~~~~~~~vl~s~~aHyS----~-~KAa~ilGlG~~~vv~VpvD-~~~rmd~~~L~~~I~~~--~~~g~p~~~VVata 286 (608)
T TIGR03811 215 SGKDLQKLGKWLVPQTKHYS----W-LKAADIIGIGLDQVIPVPVD-SNYRMDINELEKIIRKL--AAEKTPILGVVGVV 286 (608)
T ss_pred cccccccceEEEECCCccHH----H-HHHHHHcCCCcccEEEeecC-CCCcCCHHHHHHHHHHH--HhcCCCeEEEEEEc
Confidence 000 3445555 443 2 456666787 68999998 78999999999999731 12223456788889
Q ss_pred CCCCCCccCCHHHH-HHH---HHcCc--EEEEeCCCcCC---CCCC------CC------------------CC------
Q 037063 292 QSKVTGARYSYMWM-SVA---AEKGW--HVLLDATALGS---KDMD------TL------------------GL------ 332 (588)
Q Consensus 292 ~sn~tG~~~pl~~I-~~a---~~~g~--~vvvDaa~~~~---~d~~------~l------------------~l------ 332 (588)
.++.+|.+-|+++| ++| +++|+ +++||||-.+. .-++ ++ .+
T Consensus 287 GTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~ 366 (608)
T TIGR03811 287 GSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYN 366 (608)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHH
Confidence 99999999999999 887 66887 69999984331 0000 00 00
Q ss_pred ---CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhc-cc---CCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 333 ---SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASV-LS---GSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 333 ---~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~-l~---~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
...++|.+++.+||++.. |.++|++++|+..+.. +. ++.... +. ..+. .+. .+-..|+.
T Consensus 367 ~l~gle~ADSItvDpHK~g~~-Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~-~~--~~p~-----~~g-----~~~legSR 432 (608)
T TIGR03811 367 AYKAISEAESVTIDPHKMGYI-PYSAGGIVIQDIRMRDVISYFATYVFEK-GA--DIPA-----LLG-----AYILEGSK 432 (608)
T ss_pred HHhcCcCceEEEeCccccccc-CCCeEEEEEeCHHHHHHHhcCcchhccc-cc--cCcc-----ccc-----ccceecCC
Confidence 124599999999998876 9999999999874322 11 111100 00 0000 000 00011221
Q ss_pred -CccchhhHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEE--eCCCCCCCcccEEEEEe
Q 037063 406 -SISGVSSKLVECKGLDHA--DALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRI--YGPKVMFDRGPSLAFNV 480 (588)
Q Consensus 406 -~~~~~~~~~al~~aL~~l--~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i--~~p~~~~~rg~iv~f~~ 480 (588)
...+ +++..+++.+ ..-|+.++.++...+++++.+.|.++...- +.+.+++ ..+ +.-++|+|.+
T Consensus 433 ~ga~A----lklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~---~~~~~el~~~~~----pdlniV~Fr~ 501 (608)
T TIGR03811 433 AGATA----ASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKV---GDKEIEVHPLTK----PDFNMVDYVF 501 (608)
T ss_pred ccHHH----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhccccc---CCCCeeEEecCC----CCcceEEEEE
Confidence 1111 3455677766 555799999999999999999998842100 0133444 333 3468999987
Q ss_pred ecCCCCC-cCHHHH-HHHHHhCCc----------EeccccccCcccccchHHHHHHHHhhhcCCC-C---CcCCccEEEE
Q 037063 481 FDWNGTR-IDPALV-QKLADRHNI----------SLSCGFLQNIFFSGEYEQERVRVLETRSGTN-E---TRSGVSVVTA 544 (588)
Q Consensus 481 ~~~~g~~-i~~~~v-~~~l~~~gI----------~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~-~---~~~g~~~vRv 544 (588)
......- -....+ .++.++..+ .++.-.++...+.+.. ..+.++.+.. . +...+.++|.
T Consensus 502 ~~~g~~~l~~~n~ln~~i~~~~~~~~g~~~~~~~~~s~t~~~~~~yg~~~-----~~~~~~~~~~~~~~~~~~~~~~lr~ 576 (608)
T TIGR03811 502 NEKGNDDLVKMNKLNHAFYDYASYVKGSIYNNEFITSHTDFAIPDYGDSP-----FAFVNSLGFSDEEWQRAGKVTILRA 576 (608)
T ss_pred ecCCCccHHHHHHHHHHHHHhhccccCCCCCcceEeeecccccchhhhhH-----HHHHHHcCCChhhhccCCceEEEEE
Confidence 5322111 112222 333333332 2222223322222221 1122221111 1 1234459999
Q ss_pred ec--CCCCCHHHHHHHHHHHHHhhh
Q 037063 545 AL--GCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 545 Sl--g~~~t~eDv~~li~~l~~~l~ 567 (588)
++ .+.++.+-++.++..|++.+.
T Consensus 577 ~~m~p~~~~~~~~~~~~~~~~~~~~ 601 (608)
T TIGR03811 577 SVMTPYMNDKENFDEYAPKIKAAMQ 601 (608)
T ss_pred EecCcccCChhhHHHHHHHHHHHHH
Confidence 97 477777888888888877544
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-11 Score=133.12 Aligned_cols=332 Identities=10% Similarity=0.067 Sum_probs=195.8
Q ss_pred CCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
++..|+|.++ .|.-.+.+.+++.+.+.. ... . .+.. ..+...+
T Consensus 38 dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~-~~~-~---------------------~~~~--------~~~~~~~ 86 (403)
T PRK05093 38 QGKEYIDFAGGIAVTALGHCHPALVKALKEQGEK-LWH-I---------------------SNVF--------TNEPALR 86 (403)
T ss_pred CCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHh-cCc-c---------------------cCcc--------CCHHHHH
Confidence 6788999866 577778888887665532 100 0 0000 0233457
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-----CCCC-eEE-EcCCCchhHHHHHHHHH------H---h
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-----YSNP-RLL-TVYDHENEAAALMIESS------K---K 246 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-----~~gd-~ll-~~~e~~s~~~~~~~~~a------~---~ 246 (588)
+.++++++++. + .+.|+.++++|+..++.... + ..+. +|+ ....||...... ..+. . .
T Consensus 87 l~~~l~~~~~~--~--~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~-~~~~~~~~~~~~~~~ 161 (403)
T PRK05093 87 LAKKLIDATFA--E--RVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFT-VSVGGQPKYSDGFGP 161 (403)
T ss_pred HHHHHHhhCCC--C--EEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhh-HhhcCChhhhhcCCC
Confidence 88888887754 2 49999999998777765321 1 1233 344 666677633322 1110 0 0
Q ss_pred cCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCC
Q 037063 247 RGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATA 321 (588)
Q Consensus 247 ~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~ 321 (588)
....+..++.+ |.+++++.+. +++++|++.-+++..|...| +++| ++|+++|+++|+|.++
T Consensus 162 ~~~~~~~~~~~------d~~~l~~~l~--------~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~ 227 (403)
T PRK05093 162 KPADITHVPFN------DLAAVKAVID--------DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQ 227 (403)
T ss_pred CCCCcEEeCCC------CHHHHHHHhc--------CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 11233344332 6788988887 67889998855554455444 7778 9999999999999995
Q ss_pred cC-CCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccc
Q 037063 322 LG-SKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESS 398 (588)
Q Consensus 322 ~~-~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~ 398 (588)
.. +.+ ..........+|+ .|+.|.+|. ...+|+++.++++++.+.....+.
T Consensus 228 ~g~g~~g~~~~~~~~~~~pdi--~s~sK~l~~-G~rig~vv~~~~i~~~l~~~~~~~----------------------- 281 (403)
T PRK05093 228 TGMGRTGDLFAYMHYGVTPDI--LTSAKALGG-GFPIGAMLTTAEIASHFKVGTHGS----------------------- 281 (403)
T ss_pred hCCCCCccchhhhhcCCCCCE--EEecccccC-CcceEEEEEcHHHHhhcCCCCCCC-----------------------
Confidence 52 211 1111111223784 477898772 344999999998877665432210
Q ss_pred cccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEE
Q 037063 399 QSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAF 478 (588)
Q Consensus 399 f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f 478 (588)
..+..++.+ ++..++|+.+.. +.+.++.+...+++.+.|.++... .+.+. .. ...|.++.+
T Consensus 282 --t~~~~~~~~----~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~-----~~~~~--~~---~~~G~~~~~ 342 (403)
T PRK05093 282 --TYGGNPLAC----AVAEAVFDIINT---PEVLEGVKARRQRFVDGLQKINQK-----YGVFS--EI---RGMGLLIGA 342 (403)
T ss_pred --CCCCCHHHH----HHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhh-----CCCeE--eE---eeCceEEEE
Confidence 011112222 444566776643 345677778888888888875211 11110 00 012445555
Q ss_pred EeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHH
Q 037063 479 NVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRL 558 (588)
Q Consensus 479 ~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~l 558 (588)
.+... ..-....+...|.++||.+..+ |...||+++++..+.+||+.+
T Consensus 343 ~l~~~--~~~~~~~~~~~l~~~Gv~v~~~------------------------------g~~~lRl~~~~~~~~~~i~~~ 390 (403)
T PRK05093 343 ELKPQ--YKGRARDFLNAAAEEGVMVLVA------------------------------GPDVLRFAPSLVIEEADIDEG 390 (403)
T ss_pred EecCc--chhHHHHHHHHHHHCCeEEecC------------------------------CCCEEEEeCCCCCCHHHHHHH
Confidence 55321 0012345556666689987642 112899999999899999999
Q ss_pred HHHHHHhhhh
Q 037063 559 WAFVSRFLDA 568 (588)
Q Consensus 559 i~~l~~~l~~ 568 (588)
++.|.++++.
T Consensus 391 ~~~l~~~l~~ 400 (403)
T PRK05093 391 LARFEKAVAK 400 (403)
T ss_pred HHHHHHHHHH
Confidence 9999998854
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.3e-12 Score=141.01 Aligned_cols=238 Identities=14% Similarity=0.023 Sum_probs=152.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
...+.++.+..|+.||++ .+...|+|+|.++..++.+. .++||.||++.+.|-+.+.. .....|++.+++...
T Consensus 173 eG~i~eAq~~AA~~fgAd---~tyFlvNGTS~gn~a~i~a~-~~~Gd~VLvdRN~HKSv~hg---aLiLsGa~PVYl~P~ 245 (720)
T PRK13578 173 EGAAKDAQKHAAKVFNAD---KTYFVLNGTSASNKVVTNAL-LTPGDLVLFDRNNHKSNHHG---ALIQAGATPVYLETA 245 (720)
T ss_pred ChHHHHHHHHHHHHhCCC---ceEEEeCChhHHHHHHHHHh-cCCCCEEEeecccHHHHHHH---HHHHcCCeEEEeecc
Confidence 456789999999999996 45889999999999999998 89999999988888645543 123469999999765
Q ss_pred CCC----CccCHHH-----HHHHHhhh-ccccC-CCcceEEEEeCCCCCCCccCCHHHH-HH-HHHcCcEEEEeCCCcC-
Q 037063 258 WPN----LRIHSGK-----LMKKIVGK-RKKKK-KKKRGLFVFPLQSKVTGARYSYMWM-SV-AAEKGWHVLLDATALG- 323 (588)
Q Consensus 258 ~~~----~~i~~e~-----l~~~i~~~-~~~~~-~~~t~Lv~~~~~sn~tG~~~pl~~I-~~-a~~~g~~vvvDaa~~~- 323 (588)
... +.|+.++ |+++|.+. ..+.. ++..++++++.+ +..|..+++++| +. ++.++ ++++|.|+..
T Consensus 246 ~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah 323 (720)
T PRK13578 246 RNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYDGTIYNARQVVDKIGHLCD-YILFDSAWVGY 323 (720)
T ss_pred ccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCcceeecHHHHHHHhhccCC-cEEEeCcchhh
Confidence 421 2356544 88888731 00111 122488888776 559999999999 76 68888 9999999544
Q ss_pred ----CC--CCCCCCCCCCCCc----EEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccc
Q 037063 324 ----SK--DMDTLGLSLFKPD----FLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELET 393 (588)
Q Consensus 324 ----~~--d~~~l~l~~~~~D----~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~ 393 (588)
|. ++.+..+ ..++| +++-|.||.++. -+....|.++.+.++.-+... . ...+..
T Consensus 324 ~~F~p~~~~~p~~al-~~GaD~p~i~v~QStHKtL~a-lTQaS~LHvk~~~i~g~~~~v----------~----~~r~~~ 387 (720)
T PRK13578 324 EQFIPMMADCSPLLL-ELNENDPGIFVTQSVHKQQAG-FSQTSQIHKKDNHIKGQARYC----------P----HKRLNN 387 (720)
T ss_pred hccCcccccCChhhh-hcCCCCCCeEEEEChhhcchh-hhhHhhhhcCCcccccccccC----------C----HHHHHH
Confidence 21 1111111 23478 999999998773 566777777665432100000 0 000000
Q ss_pred ccccccccCCCCCccchhhHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHH
Q 037063 394 LDESSQSKFPESSISGVSSKLVECKGLDHADA-LGLILISNRARYLINWLANAL 446 (588)
Q Consensus 394 ~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~-~G~~~i~~r~~~L~~~l~~~L 446 (588)
....+ ...+|+++- ++++..|..++.. .| +.+.++...++..++++|
T Consensus 388 -al~m~-qSTSPsY~L---mASLDva~~~m~~~~G-~~l~~~~i~~a~~~R~~l 435 (720)
T PRK13578 388 -AFMLH-ASTSPFYPL---FAALDVNAKMHEGESG-RRLWMECVKLGIEARKLI 435 (720)
T ss_pred -HHHHH-cCCChHHHH---HHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHH
Confidence 00011 233344433 3666666666664 45 556666777777788877
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.7e-11 Score=132.15 Aligned_cols=311 Identities=13% Similarity=0.051 Sum_probs=197.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
.....++.+.+|+.||++ .+...|+|+|.++++++.+. +++||.||++...|-+.+..+ ...|++.++++..
T Consensus 194 ~G~i~eAe~~aA~~fgAd---~tyfvvNGTS~~n~av~~a~-~~~Gd~VLvdRN~HKSv~~aL----ilsga~PVYl~P~ 265 (713)
T PRK15399 194 TGPHLEAEEYIARTFGAE---QSYIVTNGTSTSNKIVGMYA-APAGSTLLIDRNCHKSLAHLL----MMSDVVPIWLKPT 265 (713)
T ss_pred ChHHHHHHHHHHHHhCCC---cEEEEeCChHHHHHHHHHHh-cCCCCEEEeecccHHHHHHHH----HHcCCeeEEeccc
Confidence 456789999999999996 45888999999999999998 999999999888876555443 4569999999765
Q ss_pred CCC----CccCH-----HHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEE-EEeCCCcC---
Q 037063 258 WPN----LRIHS-----GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHV-LLDATALG--- 323 (588)
Q Consensus 258 ~~~----~~i~~-----e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~v-vvDaa~~~--- 323 (588)
... +.|+. +.|+++|.+. ...++++.++++.+ +..|..+++++| +.+ |+.+ ++|.|+..
T Consensus 266 ~n~~Gi~g~I~~~~~~~e~I~~~i~~~---p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~ 338 (713)
T PRK15399 266 RNALGILGGIPRREFTRDSIEEKVAAT---TQAQWPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTH 338 (713)
T ss_pred ccccCCcCCCChhhccHHHHHHHHHhC---CCcCCceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEeccchhhhh
Confidence 321 23455 8899999731 11133467777766 679999999999 777 6776 69999543
Q ss_pred --C--CCCCCCCCCCCCCcEE---EeccCccCCCCCCceEEEEEeCcch-hcccCCCCCCCceEeeecCCCccccccccc
Q 037063 324 --S--KDMDTLGLSLFKPDFL---ICSFYKIFGENPSGFGCLFVKKSSA-SVLSGSTSSVSTIMGIEPSFSEIIELETLD 395 (588)
Q Consensus 324 --~--~d~~~l~l~~~~~D~v---v~S~~K~~G~~P~G~G~L~v~~~~~-~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~ 395 (588)
| .+...+.. ..++|.+ +-|.||.++. -+-...|.++...- ++++..+ .
T Consensus 339 F~p~~~~~sam~~-~~~aD~~i~~tQStHKtL~a-lTQaS~iHvk~~vd~~~~n~a~----~------------------ 394 (713)
T PRK15399 339 FHPIYQGKSGMSG-ERVPGKVIFETQSTHKMLAA-FSQASLIHIKGEYDEETFNEAF----M------------------ 394 (713)
T ss_pred cCcccCCcChhhC-CCCCCeeeeeeeehhccccc-cchheeeeecCCCCHHHHHHHH----H------------------
Confidence 2 11222311 1135655 8999997763 56678887765321 1111111 0
Q ss_pred ccccccCCCCCccchhhHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCC------
Q 037063 396 ESSQSKFPESSISGVSSKLVECKGLDHADA-LGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKV------ 468 (588)
Q Consensus 396 ~~~f~e~GT~~~~~~~~~~al~~aL~~l~~-~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~------ 468 (588)
.+ ...+|+++- ++++..|..+++. .| +.+.++...++..++++|.++...- +++ .++++.|+.
T Consensus 395 --m~-~STSPsY~L---mASLD~a~~~m~~~~G-~~l~~~~i~~a~~fR~~l~~~~~~~--~~w-~f~~~~~~~~~~~~~ 464 (713)
T PRK15399 395 --MH-TSTSPSYPI---VASVETAAAMLRGNPG-KRLINRSVERALHFRKEVQRLREES--DGW-FFDIWQPENVDEAEC 464 (713)
T ss_pred --HH-cCCCcHHHH---HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccccc--cCc-eeeecCccccCCccc
Confidence 11 223344433 4777777777774 45 5567777778888888888752100 000 034443310
Q ss_pred -------C------------CCcccEEEEEeecC--C----CCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHH
Q 037063 469 -------M------------FDRGPSLAFNVFDW--N----GTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERV 523 (588)
Q Consensus 469 -------~------------~~rg~iv~f~~~~~--~----g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~ 523 (588)
. .-..-=+++..++. + ...++...+.+.|+++||.+--.
T Consensus 465 w~l~p~~~whgf~~~~~~~~~lDP~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~---------------- 528 (713)
T PRK15399 465 WPVAPGEQWHGFKDADADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKT---------------- 528 (713)
T ss_pred eecCCCcccccccccccccccCCCceEEEEecCcccccccccCCCCHHHHHHHHHHcCCEEEec----------------
Confidence 0 00111223333321 1 12377888999999999986421
Q ss_pred HHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 524 RVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 524 ~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
+...|=+=++...|.+++++|+++|.+|-+
T Consensus 529 --------------d~~~vL~l~s~g~t~~~~~~L~~aL~~f~~ 558 (713)
T PRK15399 529 --------------GPYNLLFLFSIGIDKTKAMGLLRGLTEFKR 558 (713)
T ss_pred --------------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 111455555667799999999999998843
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-11 Score=135.96 Aligned_cols=311 Identities=12% Similarity=0.039 Sum_probs=197.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
.....++.+.+|+.||++ .+...|.|+|.+++.++.+. ..+||.||++...|-+.+..+ ...|++.++++..
T Consensus 194 ~G~i~eAe~~AA~~fgAd---~tyfvvNGTS~~n~av~~a~-~~~Gd~VLvdRN~HKSv~haL----ilsga~PVYl~P~ 265 (714)
T PRK15400 194 SGPHKEAEEYIARVFNAD---RSYMVTNGTSTANKIVGMYS-APAGSTVLIDRNCHKSLTHLM----MMSDVTPIYFRPT 265 (714)
T ss_pred ChHHHHHHHHHHHHhCCC---cEEEEeCchHHHHHHHHHHh-cCCCCEEEeecccHHHHHHHH----HHcCCeEEEeccc
Confidence 456789999999999996 45888999999999999998 899999999888876455443 4569999999765
Q ss_pred CCC----CccC-----HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcC----
Q 037063 258 WPN----LRIH-----SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALG---- 323 (588)
Q Consensus 258 ~~~----~~i~-----~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~---- 323 (588)
... +.|+ .+.|+++|.+. ...+++..++++.+ +..|..+++++| +.++.++ +++|.|+..
T Consensus 266 rn~~Gi~g~I~~~~~~~e~i~~~i~~~---p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F 339 (714)
T PRK15400 266 RNAYGILGGIPQSEFQHATIAKRVKET---PNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNF 339 (714)
T ss_pred ccccCCccCCCccccCHHHHHHHHHhC---ccccCccEEEEECC-CCccEecCHHHHHHHhCCCC--EEEEccchhhhcc
Confidence 422 2345 88999999731 11123336667665 679999999999 9999887 799999544
Q ss_pred -CC--CCCCCCCCCCCCc--EEEeccCccCCCCCCceEEEEEeCcch-hcccCCCCCCCceEeeecCCCccccccccccc
Q 037063 324 -SK--DMDTLGLSLFKPD--FLICSFYKIFGENPSGFGCLFVKKSSA-SVLSGSTSSVSTIMGIEPSFSEIIELETLDES 397 (588)
Q Consensus 324 -~~--d~~~l~l~~~~~D--~vv~S~~K~~G~~P~G~G~L~v~~~~~-~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~ 397 (588)
|. +...+......-| +++-|.||.++. -+-...|.++..+- ++++..+ .
T Consensus 340 ~p~~~~~sam~~ga~~~~~i~vtQStHKtL~a-lTQaS~LHvkg~vd~~~~n~a~------------------------~ 394 (714)
T PRK15400 340 SPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAY------------------------M 394 (714)
T ss_pred CcccCCcChhhcCCCCCCceEEEEchhhcccc-hhHHhHHHHcCCCCHHHHHHHH------------------------H
Confidence 21 1222321110015 999999997763 44555555543210 0111100 0
Q ss_pred ccccCCCCCccchhhHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe--EEEeCCCCC-----
Q 037063 398 SQSKFPESSISGVSSKLVECKGLDHADA-LGLILISNRARYLINWLANALMNLHHPHSETGIPL--VRIYGPKVM----- 469 (588)
Q Consensus 398 ~f~e~GT~~~~~~~~~~al~~aL~~l~~-~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~--v~i~~p~~~----- 469 (588)
.+ ...+|+++- ++++..|..+++. .| +.+.++...++..++++|.+++.. ... ++++.|...
T Consensus 395 m~-~STSPsY~l---~ASLD~a~~~m~~~~G-~~l~~~~i~~a~~~R~~l~~~~~~-----~~~w~~~~~~~~~~~~~~~ 464 (714)
T PRK15400 395 MH-TTTSPHYGI---VASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLRTE-----SDGWFFDVWQPDHIDTTEC 464 (714)
T ss_pred HH-cCCCcHHHH---HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhCCCc-----ccCceEEecChhhcccchh
Confidence 11 223344433 4777777777764 45 566777778888889988886310 001 445443210
Q ss_pred --------------------CCcccEEEEEeec--CCC----CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHH
Q 037063 470 --------------------FDRGPSLAFNVFD--WNG----TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERV 523 (588)
Q Consensus 470 --------------------~~rg~iv~f~~~~--~~g----~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~ 523 (588)
.-..-=+++..++ .+| ..++...+.+.|+++||.+--.
T Consensus 465 w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~---------------- 528 (714)
T PRK15400 465 WPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKT---------------- 528 (714)
T ss_pred cccCccccccCcccccccccccCCceEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEec----------------
Confidence 0001122333322 122 2367888999999999986421
Q ss_pred HHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 524 RVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 524 ~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
+...|=+=++..+|.+++++|+++|.+|-+
T Consensus 529 --------------d~~~iLfl~s~g~t~~~~~~L~~aL~~f~~ 558 (714)
T PRK15400 529 --------------GPYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (714)
T ss_pred --------------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 112455556677899999999999998833
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-11 Score=131.26 Aligned_cols=332 Identities=11% Similarity=0.076 Sum_probs=197.2
Q ss_pred CCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
++..|||..+ .|.-.+.+.+++.+.+..-..... .. ..+...+
T Consensus 37 dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~----------------------~~---------~~~~~~~ 85 (406)
T PRK12381 37 QGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGN----------------------GY---------TNEPVLR 85 (406)
T ss_pred CCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccC----------------------cc---------CCHHHHH
Confidence 6778999866 566677888887666532111000 00 1344567
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-----C-CCCeEE-EcCCCchhHHHHHHHHHHhcC-------
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-----Y-SNPRLL-TVYDHENEAAALMIESSKKRG------- 248 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-----~-~gd~ll-~~~e~~s~~~~~~~~~a~~~G------- 248 (588)
+.++++++++. + .++|+.++++|+..++.... + . ...+|+ ....||...... ..+.....
T Consensus 86 la~~l~~~~~~--~--~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~-~~~~~~~~~~~~~~~ 160 (406)
T PRK12381 86 LAKKLIDATFA--D--RVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFT-VSAGGQPKYSQDFAP 160 (406)
T ss_pred HHHHHHhhCCC--C--eEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhH-HhhcCCcccccCCCC
Confidence 88888888754 2 49999999999887776531 1 1 233455 566677633322 11111000
Q ss_pred --CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccC-C---HHHH-HHHHHcCcEEEEeCCC
Q 037063 249 --ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARY-S---YMWM-SVAAEKGWHVLLDATA 321 (588)
Q Consensus 249 --~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~-p---l~~I-~~a~~~g~~vvvDaa~ 321 (588)
..+..++. .|.+++++.+. +++++|++.-++..-|... | +++| ++|+++|+++|+|.++
T Consensus 161 ~~~~~~~~~~------~d~~~l~~~l~--------~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~ 226 (406)
T PRK12381 161 LPPDIRHAAY------NDLNSASALID--------DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQ 226 (406)
T ss_pred CCCCeeEeCC------CCHHHHHHhcc--------CCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchh
Confidence 01222222 26788888886 5788888875544444332 3 4557 8999999999999996
Q ss_pred cC-CCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccc
Q 037063 322 LG-SKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESS 398 (588)
Q Consensus 322 ~~-~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~ 398 (588)
.. +.. .-........+|+ .++.|.+|. ..-+|+++.++++++.+.....+. +
T Consensus 227 tG~gr~G~~~~~~~~~v~pDi--~t~sK~l~g-G~~ig~~~~~~~~~~~~~~~~~~~--t-------------------- 281 (406)
T PRK12381 227 TGVGRTGELYAYMHYGVTPDV--LTTAKALGG-GFPIGAMLTTEKCASVMTVGTHGT--T-------------------- 281 (406)
T ss_pred hCCCCCcchhhhHhhCCCCCE--EEehhhhhC-CCceEEEEEcHHHHhhcCCCCCCC--C--------------------
Confidence 32 211 1010111223786 577897762 344899999988877665422110 0
Q ss_pred cccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEE
Q 037063 399 QSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAF 478 (588)
Q Consensus 399 f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f 478 (588)
| + .+... .++..++|+.+.+ +.+.++.+++.+++.+.|.++... .+.+.-. ...|.++.+
T Consensus 282 ~---~-~~pl~---~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~-----~~~~~~v-----rg~Gl~~~~ 341 (406)
T PRK12381 282 Y---G-GNPLA---SAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINAR-----YGLFSEI-----RGLGLLIGC 341 (406)
T ss_pred C---C-CCHHH---HHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhh-----CCCEEEE-----ecCeEEEEE
Confidence 0 1 11111 1444566766643 467888888999999988876211 1111100 123556666
Q ss_pred EeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHH
Q 037063 479 NVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRL 558 (588)
Q Consensus 479 ~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~l 558 (588)
.+.+... -....+.+.+.++||.+... |...||+++.+..|.+||+++
T Consensus 342 ~l~~~~~--~~~~~~~~~l~~~Gv~v~~~------------------------------g~~~lRl~p~~~~t~~~i~~~ 389 (406)
T PRK12381 342 VLNAEYA--GKAKQISQEAAKAGVMVLIA------------------------------GPNVVRFAPALNISEEEITTG 389 (406)
T ss_pred EecCchh--hHHHHHHHHHHHCCcEEeeC------------------------------CCCEEEEeCCccCCHHHHHHH
Confidence 6543100 12355677788899988531 112899999999999999999
Q ss_pred HHHHHHhhhh
Q 037063 559 WAFVSRFLDA 568 (588)
Q Consensus 559 i~~l~~~l~~ 568 (588)
++.|.+++++
T Consensus 390 ~~~l~~~l~~ 399 (406)
T PRK12381 390 LDRFARACER 399 (406)
T ss_pred HHHHHHHHHH
Confidence 9999998864
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-11 Score=127.18 Aligned_cols=314 Identities=13% Similarity=0.048 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc---
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA--- 257 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~--- 257 (588)
+.++.+.+++++|.+ .+++|+++|.|++++... .+++||+| ....|.... ....+..|+.++.++.+
T Consensus 73 ~~~lE~~va~~~G~~----~av~v~sGT~Al~ll~~l-~l~pGDeV-psn~~f~Tt----~ahIe~~Gav~vDi~~dea~ 142 (450)
T TIGR02618 73 FYHLERTVRELYGFK----YVVPTHQGRGAENLLSQI-AIKPGDYV-PGNMYFTTT----RYHQEKNGATFVDIIIDEAH 142 (450)
T ss_pred HHHHHHHHHHHHCCC----eEEEcCCHHHHHHHHHHh-CCCCcCEE-CCceeHHHH----HHHHHhCCeEEEeeeccccc
Confidence 468999999999985 299999999999987644 48999987 334443311 12125578866666443
Q ss_pred ------CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCC-CccCC---HHHH-HHHHHcCcEEEEeCCCcCC--
Q 037063 258 ------WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVT-GARYS---YMWM-SVAAEKGWHVLLDATALGS-- 324 (588)
Q Consensus 258 ------~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~t-G~~~p---l~~I-~~a~~~g~~vvvDaa~~~~-- 324 (588)
..++.+|+++|+++|+. ....++++|++....|.. |..+| +++| ++|+++|+.||+|+|++.+
T Consensus 143 ~~~~~~p~~GniD~~~Le~aI~~----~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA 218 (450)
T TIGR02618 143 DAQLNIPFKGNVDLKKLQKLIDE----VGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENA 218 (450)
T ss_pred ccccCCCCCCCcCHHHHHHHhcc----ccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhCh
Confidence 24588999999999982 112355677777777766 78866 4667 8999999999999997774
Q ss_pred --CCC---CCCCCCC--------CCCcEEEeccCccCCCCCCceEEEEEeC-cchhcccCC--CCCCCceEeeecCCCcc
Q 037063 325 --KDM---DTLGLSL--------FKPDFLICSFYKIFGENPSGFGCLFVKK-SSASVLSGS--TSSVSTIMGIEPSFSEI 388 (588)
Q Consensus 325 --~d~---~~l~l~~--------~~~D~vv~S~~K~~G~~P~G~G~L~v~~-~~~~~l~~~--~~g~~g~v~~~~~~~~~ 388 (588)
+.. .-.+.+. ..+|.+..|++|-++. |.| |+|..++ +++++++.. .++ |+..
T Consensus 219 ~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~-~~G-G~l~~~d~~l~~k~r~~~~~~e--G~~t-------- 286 (450)
T TIGR02618 219 YFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLV-NIG-GFLCMNDDEMFQSAKELVVVFE--GMPS-------- 286 (450)
T ss_pred hhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCC-CCc-eEEEeCCHHHHHHHHHHhhhcC--Cccc--------
Confidence 100 0111111 1389999999997775 765 6666555 555655443 222 2211
Q ss_pred cccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCC
Q 037063 389 IELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKV 468 (588)
Q Consensus 389 ~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~ 468 (588)
.|...-. .+.++..||+..-. ....++...-+++|.+.|.+. | +.|..|
T Consensus 287 -------------yGgla~r---~~~ala~gL~e~~~---~~y~~~r~~~a~~La~~L~~~-------G---vpv~~p-- 335 (450)
T TIGR02618 287 -------------YGGLAGR---DMEAMAIGIREAVD---YEYIEHRVKQVRYLGDKLKAA-------G---VPIVEP-- 335 (450)
T ss_pred -------------cCchhhh---hHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHC-------C---CcccCC--
Confidence 1111111 13455566654322 123334444578888888885 3 444444
Q ss_pred CCCcccEEEEEee----cCCCCCcCHHH-HHHHHHhCCcE-eccccccCcccccchHHHHHHHHhhhcCCCCC-cCCccE
Q 037063 469 MFDRGPSLAFNVF----DWNGTRIDPAL-VQKLADRHNIS-LSCGFLQNIFFSGEYEQERVRVLETRSGTNET-RSGVSV 541 (588)
Q Consensus 469 ~~~rg~iv~f~~~----~~~g~~i~~~~-v~~~l~~~gI~-v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~-~~g~~~ 541 (588)
..|.+|-+... ...++...... ...+..+.||. +-.|.+......+ .+.. ......
T Consensus 336 --~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~---------------~~~~~~~~~el 398 (450)
T TIGR02618 336 --VGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNV---------------TGEHHRPKLEL 398 (450)
T ss_pred --CCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCC---------------CCcccCCccce
Confidence 34566666542 22222233333 34555677884 2233321100000 0000 112348
Q ss_pred EEEecC--CCCCHHHHHHHHHHHHHhhhhh
Q 037063 542 VTAALG--CLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 542 vRvSlg--~~~t~eDv~~li~~l~~~l~~~ 569 (588)
||+.+. .| |.+.++..++.|..+.+.-
T Consensus 399 ~rlaiprr~y-t~~h~~~v~~~~~~~~~~~ 427 (450)
T TIGR02618 399 VRLTIPRRVY-TYAHMDVVADGIIKLYKHR 427 (450)
T ss_pred eeeccccccc-cHhHHHHHHHHHHHHHhhH
Confidence 999885 44 5699999999998865543
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.6e-11 Score=126.10 Aligned_cols=347 Identities=10% Similarity=0.054 Sum_probs=197.4
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|.++..|||..+. |--.+.+.+++.+.+..... .+ +. .. ..+..
T Consensus 31 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~--~~---------------------~~--~~-----~~~~~ 80 (412)
T TIGR02407 31 DEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGI--IH---------------------SL--DM-----ATEAK 80 (412)
T ss_pred eCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccc--ee---------------------cc--cc-----CcHHH
Confidence 3468899998554 77788999988766642110 00 00 00 12344
Q ss_pred HHHHHHHHHHhCCCC-CCceEEEe-cCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHH----h--cC---
Q 037063 182 SKIRKRIMDFMNISE-DDYTLVFT-ANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSK----K--RG--- 248 (588)
Q Consensus 182 ~~~r~~ia~~lga~~-~e~~vvft-~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~----~--~G--- 248 (588)
.++-+++++.+..+. ..+.++|. +++++|+..+++....-.|. +|+ ....||......+ .... + .|
T Consensus 81 ~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al-s~~~~~~~~~~~~~~~ 159 (412)
T TIGR02407 81 REFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSL-SVTGNRFKRQGAGVPL 159 (412)
T ss_pred HHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHH-HhcCCcccccCCCCCC
Confidence 566667766642221 11236675 79999887766643222343 465 4566776333322 1111 1 11
Q ss_pred CEEEEEeccCCCCc----cCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccC-C---HHHH-HHHHHcCcEEEEeC
Q 037063 249 ARVSSAEFAWPNLR----IHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARY-S---YMWM-SVAAEKGWHVLLDA 319 (588)
Q Consensus 249 ~~v~~v~~~~~~~~----i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~-p---l~~I-~~a~~~g~~vvvDa 319 (588)
..+..+|.. +.. -+.+.+++.+.+. ....+++..|++.-+.+..|... | +++| ++|+++|+++|+|.
T Consensus 160 ~~~~~~p~~--~~~~~~~~~~~~l~~~~~~~--~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DE 235 (412)
T TIGR02407 160 SNVSRMPYD--GYLGGDVDTIAYFEKLLEDS--SSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDD 235 (412)
T ss_pred CCeEECCCC--CccccchhHHHHHHHHHHhc--cCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 123444432 110 1356677777520 01113567888888888899854 4 3446 88999999999999
Q ss_pred CCc-CCC--CCCCCCCCCCCCcEEEeccCccCCCCCCc--eEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 320 TAL-GSK--DMDTLGLSLFKPDFLICSFYKIFGENPSG--FGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 320 a~~-~~~--d~~~l~l~~~~~D~vv~S~~K~~G~~P~G--~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
++. ++. .+-........||++++| |.+| +.| +|+++++++. +.+.+...+ ++
T Consensus 236 V~tG~GRtG~~~a~~~~~v~PDi~~~~--K~lg--~~G~pigav~~~~~~-~~~~~~~~~--~T---------------- 292 (412)
T TIGR02407 236 IQAGCGRTGTFFSFEPAGIEPDIVCLS--KSIS--GYGLPLALTLIKPEL-DVWKPGEHN--GT---------------- 292 (412)
T ss_pred hhhCCCccchhHHhcccCCCCCEEEec--hhcc--CCccceeEEEEchhh-hccCCCccC--CC----------------
Confidence 975 221 000111112349988755 9877 334 8999998875 433321111 00
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDH-ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG 473 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~-l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg 473 (588)
| +.|..+ .++..++|+. +.+ +.+.++++.+.+++.++|+.+... .+.+ +. . ....|
T Consensus 293 ----~----~gnpl~---~aaa~a~l~~~i~~---~~l~~~~~~~g~~l~~~l~~l~~~-----~~~~-~~-~--vrg~G 349 (412)
T TIGR02407 293 ----F----RGNNLA---FVTATAALEYYWSD---DAFEKAVQRKSEIIQERLDRIVAE-----YPEL-IK-Q--VRGRG 349 (412)
T ss_pred ----C----CccHHH---HHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHhh-----CCCc-eE-e--eecce
Confidence 0 011111 1333456663 333 567888888888888888765221 1211 11 1 01345
Q ss_pred cEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHH
Q 037063 474 PSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFE 553 (588)
Q Consensus 474 ~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~e 553 (588)
.++.+.+.+. .....+.+.+.++||.+.... .+..+||+++.+..|.+
T Consensus 350 l~~~l~l~~~----~~~~~~~~~~~~~Gv~v~~~~----------------------------~~~~~lr~~p~l~~t~~ 397 (412)
T TIGR02407 350 LMQGIECGDG----DLAGKIAKAAFENGLIIETSG----------------------------PNDEVIKLLPPLTIDEE 397 (412)
T ss_pred eEEEEEecCh----HHHHHHHHHHHHCCCEEeccC----------------------------CCCCEEEEECCCCCCHH
Confidence 6767777541 123456677778999886420 11128999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 037063 554 DTYRLWAFVSRFLD 567 (588)
Q Consensus 554 Dv~~li~~l~~~l~ 567 (588)
|++++++.|.+.|+
T Consensus 398 ~i~~~~~~l~~~l~ 411 (412)
T TIGR02407 398 TLQQGLDILEQAVE 411 (412)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-10 Score=123.59 Aligned_cols=312 Identities=13% Similarity=0.077 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc---
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA--- 257 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~--- 257 (588)
+.++.+.+++++|.+ | +++|+++|.|++++.. +.+++||+| ....+..... .-....|+....+..+
T Consensus 80 ~~~LE~~vAe~lG~e---~-aV~v~sGTaAl~ll~~-l~v~pGd~V-p~n~~f~Tt~----ahI~~~Ga~fvDi~~d~a~ 149 (460)
T PRK13237 80 FYHLEETVQEYYGFK---H-VVPTHQGRGAENLLSR-IAIKPGQYV-PGNMYFTTTR----YHQELNGGIFVDIIIDEAH 149 (460)
T ss_pred HHHHHHHHHHHHCCC---e-EEEeCCHHHHHHHHHH-hCCCCcCEE-CCccchHhhH----HHHHhCCcEEEeeeccccc
Confidence 458899999999995 2 9999999999998744 448999975 4444543221 1124567755544311
Q ss_pred ------CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCC-CccCC---HHHH-HHHHHcCcEEEEeCCCcCCCC
Q 037063 258 ------WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVT-GARYS---YMWM-SVAAEKGWHVLLDATALGSKD 326 (588)
Q Consensus 258 ------~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~t-G~~~p---l~~I-~~a~~~g~~vvvDaa~~~~~d 326 (588)
..++.+|+++|+++|+. ...++++++.+....|.. |...| +++| ++|+++|+.||+|+|++.+--
T Consensus 150 ~~~~~~p~tgnlD~d~Le~~I~~----~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna 225 (460)
T PRK13237 150 DAQSDHPFKGNVDLDKLQALIDE----VGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENA 225 (460)
T ss_pred ccccCCCCCCCcCHHHHHHHhcc----ccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcCh
Confidence 34688999999999982 222466777777777888 67764 5777 899999999999999776500
Q ss_pred ----CC---CCCCCC--------CCCcEEEeccCccCCCCCCceEEEEEeCc-chhcccCCC--CCCCceEeeecCCCcc
Q 037063 327 ----MD---TLGLSL--------FKPDFLICSFYKIFGENPSGFGCLFVKKS-SASVLSGST--SSVSTIMGIEPSFSEI 388 (588)
Q Consensus 327 ----~~---~l~l~~--------~~~D~vv~S~~K~~G~~P~G~G~L~v~~~-~~~~l~~~~--~g~~g~v~~~~~~~~~ 388 (588)
.. --+-+. ...|.+++|++|-++. |.| |++..+++ +.++++... +- |+.
T Consensus 226 ~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~-~~G-G~i~t~D~eL~~~~r~~~~~~e--G~~--------- 292 (460)
T PRK13237 226 YFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLV-NIG-GFLAMNDEELFDEAKELVVVYE--GMP--------- 292 (460)
T ss_pred hhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCC-CCc-eEEEECCHHHHHHHHHhccccC--CCc---------
Confidence 00 001110 1379999999996664 554 77777764 445554331 11 111
Q ss_pred cccccccccccccCCCCCccch--hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCC
Q 037063 389 IELETLDESSQSKFPESSISGV--SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGP 466 (588)
Q Consensus 389 ~~~~~~~~~~f~e~GT~~~~~~--~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p 466 (588)
.+.+. ..+.++..+|+.... .+-+..|+ ..+++|.+.|.+- | +.|+.|
T Consensus 293 -----------------tygg~~grd~~alAvgl~E~~~--~~y~~~ri-~~~~~l~~~L~~~-------G---vpv~~p 342 (460)
T PRK13237 293 -----------------SYGGMAGRDMEAMAIGIEESVQ--YEYIEHRV-GQVRYLGEKLLAA-------G---VPIVEP 342 (460)
T ss_pred -----------------CCCChhhhHHHHHHhHHHhhch--HHHHHHHH-HHHHHHHHHHHHC-------C---CceecC
Confidence 11111 123555556654322 24444444 4568888888874 4 445555
Q ss_pred CCCCCcccEEEEEe----ecCCCCCcCHHH-HHHHHHhCCcE-eccccccCcccccchHHHHHHHHhhhcCCCCC-cCCc
Q 037063 467 KVMFDRGPSLAFNV----FDWNGTRIDPAL-VQKLADRHNIS-LSCGFLQNIFFSGEYEQERVRVLETRSGTNET-RSGV 539 (588)
Q Consensus 467 ~~~~~rg~iv~f~~----~~~~g~~i~~~~-v~~~l~~~gI~-v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~-~~g~ 539 (588)
..|.-|-+.. +...+....... ...+..+.||. +-.|.+......+ .+.. ....
T Consensus 343 ----~ggH~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~---------------~~~~~~~~~ 403 (460)
T PRK13237 343 ----VGGHAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPK---------------TGENHYPKL 403 (460)
T ss_pred ----CCceEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCC---------------CCccCCCcc
Confidence 2334443332 222222233333 34555677884 2223322100000 0000 1123
Q ss_pred cEEEEecC--CCCCHHHHHHHHHHHHHhhhhh
Q 037063 540 SVVTAALG--CLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 540 ~~vRvSlg--~~~t~eDv~~li~~l~~~l~~~ 569 (588)
..||+.+. .| |.+.+|..++.|..+.+..
T Consensus 404 el~rlaiprr~y-t~~h~~~v~~~~~~~~~~~ 434 (460)
T PRK13237 404 ELVRLTIPRRVY-TYAHMDVVADSVIKLYKHR 434 (460)
T ss_pred ceeeeccccccc-cHHHHHHHHHHHHHHHHhH
Confidence 48999885 44 5699999999998866543
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.5e-11 Score=121.03 Aligned_cols=351 Identities=14% Similarity=0.131 Sum_probs=219.4
Q ss_pred CCCCCchhHHHHHhhhccCCCCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCccccc
Q 037063 88 PQYLQTDQADRIRAQDYFHLSLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDIC 161 (588)
Q Consensus 88 p~y~~~~~~~~iR~~~f~~l~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~ 161 (588)
|.|.. ..+.-.|.+-....|.++.-|||..+. |-..+.+++++.+...+-..
T Consensus 19 ~~Y~~-~~~~~~~G~G~~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h--------------------- 76 (404)
T COG4992 19 PTYGR-LPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWH--------------------- 76 (404)
T ss_pred cccCc-CceeEEeccccEEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhh---------------------
Confidence 55654 223334433223346689999995543 55667888887655432111
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CC--CCC-eEE-EcCCCchhH
Q 037063 162 YRSVNLNSWLQYGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FY--SNP-RLL-TVYDHENEA 236 (588)
Q Consensus 162 ~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~--~gd-~ll-~~~e~~s~~ 236 (588)
..|.. ..+...++-+.+.+..+ ..+ .|+|.+++|||+..++..-. +. ++. +|+ ....+|.-.
T Consensus 77 --~sn~~--------~~~~~~~la~~L~~~s~-~~d--~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT 143 (404)
T COG4992 77 --VSNLF--------YNEPQAELAEKLVELSP-FAD--RVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRT 143 (404)
T ss_pred --ccccc--------CChHHHHHHHHHHhhCc-ccc--EEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCcc
Confidence 11111 13445677777777776 323 49999999999887765432 22 222 355 455565411
Q ss_pred HHHH-----HHHHHhcC---CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH----
Q 037063 237 AALM-----IESSKKRG---ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---- 304 (588)
Q Consensus 237 ~~~~-----~~~a~~~G---~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---- 304 (588)
.-.+ .++.+..+ -.+..+|++ |+++++++|+ ++|..|++.-++-.-|++.|-++
T Consensus 144 ~galS~t~~~ky~~~F~Pl~~g~~~vpfn------Di~al~~ai~--------~~taAvivEPIQGEgGV~~~~~~fl~~ 209 (404)
T COG4992 144 LGALSATGQPKYRKGFGPLLPGFRHVPFN------DIEALEAAID--------EDTAAVIVEPIQGEGGVIPAPPEFLKA 209 (404)
T ss_pred ceeeeccCChhhccCCCCCCCCceecCCC------CHHHHHHHhc--------cCeEEEEEecccCCCCCCCCCHHHHHH
Confidence 1111 01111111 124455553 7899999999 79999999999999999988444
Q ss_pred H-HHHHHcCcEEEEeCCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCc
Q 037063 305 M-SVAAEKGWHVLLDATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVST 377 (588)
Q Consensus 305 I-~~a~~~g~~vvvDaa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g 377 (588)
+ ++|+++|+++|+|..|.. +. -....++ .||+++. -|-+|. ..-+|+++.++...+.+.+-..|.
T Consensus 210 lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV---~PDI~tl--aK~LgG-G~PigA~la~~~~~~~~~~G~HgS-- 281 (404)
T COG4992 210 LRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGV---EPDILTL--AKALGG-GFPIGAMLATEEIASAFTPGDHGS-- 281 (404)
T ss_pred HHHHHHHhCeEEEEeccccCCCccchHHHHHHhCC---CCCEEEe--eccccC-CccceeeEEchhhhhcCCCCcccC--
Confidence 6 789999999999999876 21 1122232 3898764 586653 345899999965555555544331
Q ss_pred eEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCC
Q 037063 378 IMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETG 457 (588)
Q Consensus 378 ~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g 457 (588)
+ | .|.| .+ .++..++|+.+.+ +.+.++.+++.+++.++|.++.++.
T Consensus 282 T--------------------f--GGNp--La---cAv~~a~l~~l~~---e~ll~~v~~~g~~~~~~L~~l~~~~---- 327 (404)
T COG4992 282 T--------------------F--GGNP--LA---CAVALAVLEVLLE---EGLLENVREKGEYLLQRLRELKRRY---- 327 (404)
T ss_pred C--------------------C--CcCH--HH---HHHHHHHHHHHcc---hhHHHHHHHHHHHHHHHHHHHhhcC----
Confidence 0 1 1222 11 2344456666655 7788889999999999999875432
Q ss_pred CCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcC
Q 037063 458 IPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRS 537 (588)
Q Consensus 458 ~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~ 537 (588)
+.++=+ .-+|-++.+.+... .....+.+.+.++|+.+-. .
T Consensus 328 -~~v~~v-----RG~GLmiGiel~~~----~~a~~~~~~~~~~gvL~~~------------------------------a 367 (404)
T COG4992 328 -PLVKEV-----RGRGLMIGIELKEP----YRARDIVRALREEGVLVLP------------------------------A 367 (404)
T ss_pred -Cceeee-----ecceeEEEEEecCc----ccHHHHHHHHHHCCeEEec------------------------------C
Confidence 222211 13456777777552 1356778888889987642 1
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 538 GVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 538 g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
|..+||+.+...-+.|||+..++.+.+.++..
T Consensus 368 ~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~ 399 (404)
T COG4992 368 GPNVIRFLPPLVITEEEIDEALDALERALAAA 399 (404)
T ss_pred CCCeEEecCCccCCHHHHHHHHHHHHHHHHHh
Confidence 22299999999999999999999999988753
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-11 Score=130.82 Aligned_cols=293 Identities=11% Similarity=0.057 Sum_probs=171.0
Q ss_pred HHHHHHHHHHhCCC---C-CCceE--EEecCHHHHHH--HHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEE
Q 037063 182 SKIRKRIMDFMNIS---E-DDYTL--VFTANQSSAFK--LLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSS 253 (588)
Q Consensus 182 ~~~r~~ia~~lga~---~-~e~~v--vft~g~T~al~--lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~ 253 (588)
.++|+.|++++.-. + .+..| +-+.+++++.. +.+..+ +.|||+|++....+.+. ...++..|++++.
T Consensus 94 ~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~-~~pGd~Vlv~~P~y~~y----~~~~~~~g~~~~~ 168 (423)
T PLN02397 94 AEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLAR-FYPGSTIYIPNPTWGNH----HNIFRDAGVPVRT 168 (423)
T ss_pred HHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHH-hCCCCEEEEeCCCchhH----HHHHHHcCCeEEE
Confidence 36788888866321 1 01123 22334444433 222333 46999987666554422 3455678999999
Q ss_pred Eecc-CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCC--CcCCCC
Q 037063 254 AEFA-WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDAT--ALGSKD 326 (588)
Q Consensus 254 v~~~-~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa--~~~~~d 326 (588)
++.. ..+..+|.+.+++.+.. . .+++++++++.++||||..++.+++ ++|+++|++||+|.+ .+..-+
T Consensus 169 v~l~~~~~~~~d~~~l~~~l~~----~-~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~ 243 (423)
T PLN02397 169 YRYYDPKTRGLDFDGLLEDLKA----A-PDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGD 243 (423)
T ss_pred eecccCcCCccCHHHHHHHHHh----C-CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCc
Confidence 9873 23467899998888761 1 2568999999999999999998874 678899999999998 222100
Q ss_pred ----CCCC-CCCCCC-CcEEEeccCccCCCCCCceEEEE--E-eCcchhccc----CCCCCCCceEeeecCCCccccccc
Q 037063 327 ----MDTL-GLSLFK-PDFLICSFYKIFGENPSGFGCLF--V-KKSSASVLS----GSTSSVSTIMGIEPSFSEIIELET 393 (588)
Q Consensus 327 ----~~~l-~l~~~~-~D~vv~S~~K~~G~~P~G~G~L~--v-~~~~~~~l~----~~~~g~~g~v~~~~~~~~~~~~~~ 393 (588)
...+ .+.... .-+++.||.|.||++.-++|+++ + .++.++.+. ......
T Consensus 244 ~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~------------------ 305 (423)
T PLN02397 244 LDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPM------------------ 305 (423)
T ss_pred hhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcc------------------
Confidence 0011 111111 13667799999985456689986 3 233322221 111000
Q ss_pred ccccccccCCCCCccchhhHHHHHHHHHH---HHHh--CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC-eEEEeCCC
Q 037063 394 LDESSQSKFPESSISGVSSKLVECKGLDH---ADAL--GLILISNRARYLINWLANALMNLHHPHSETGIP-LVRIYGPK 467 (588)
Q Consensus 394 ~~~~~f~e~GT~~~~~~~~~~al~~aL~~---l~~~--G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~-~v~i~~p~ 467 (588)
..+++.+.+ .++..+|+. .+.. -++.+.++.++.++.+.+.|.++ |.+ .+.++.
T Consensus 306 -------~~~~~~~~q----~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~-------~~~~~~~~~~-- 365 (423)
T PLN02397 306 -------YSNPPIHGA----SIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEAR-------GSPGDWSHIT-- 365 (423)
T ss_pred -------cCCCcHHHH----HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCCCCccc--
Confidence 011111111 122223321 1010 03556677888888888988875 111 122222
Q ss_pred CCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecC
Q 037063 468 VMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALG 547 (588)
Q Consensus 468 ~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg 547 (588)
.+|++..|. + ++.+.+.+++++.||.+-. . . |+++.
T Consensus 366 ---p~gg~fl~~--~-----l~~~~~~~Ll~~~~V~v~~------------------------------~---~-Ri~~~ 401 (423)
T PLN02397 366 ---KQIGMFSFT--G-----LNKEQVDRMTKEYHIYMTR------------------------------D---G-RISMA 401 (423)
T ss_pred ---CCceEEEec--C-----CCHHHHHHHHHhCCEEECC------------------------------C---C-eEEEe
Confidence 346665553 2 3355677888999998742 2 2 88874
Q ss_pred CCCCHHHHHHHHHHHHHhhh
Q 037063 548 CLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 548 ~~~t~eDv~~li~~l~~~l~ 567 (588)
- .+.++|+++++.|++.++
T Consensus 402 ~-~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 402 G-LSSKNVPYLADAIHAVVT 420 (423)
T ss_pred e-CCHHHHHHHHHHHHHHHh
Confidence 2 478999999999999875
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.9e-11 Score=127.62 Aligned_cols=337 Identities=12% Similarity=0.093 Sum_probs=204.9
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|..+.-|||..+. |--.+.+.+++.+.+..... .+ . .. ..+..
T Consensus 78 D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~-~~---------------------~----~~-----~~~~~ 126 (459)
T PRK11522 78 DTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPL-HS---------------------Q----EL-----LDPLR 126 (459)
T ss_pred ECCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcc-cc---------------------c----cc-----CCHHH
Confidence 3467889997544 56677888888766632110 00 0 00 13445
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C--CCCC-eEE-EcCCCchhHHHHHHHHHHhcCC-------
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F--YSNP-RLL-TVYDHENEAAALMIESSKKRGA------- 249 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~--~~gd-~ll-~~~e~~s~~~~~~~~~a~~~G~------- 249 (588)
.++.+++++++.... ..+.|+.++|+|+..+++.-. + +.|. +|+ ....||...... .........
T Consensus 127 ~~lae~L~~~~p~~~--~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~-ls~~~~~~~~~~~~~~ 203 (459)
T PRK11522 127 AMLAKTLAALTPGKL--KYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGA-LSATAKSTFRKPFMPL 203 (459)
T ss_pred HHHHHHHHHhCCCCC--CEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHH-hhhcCCcccccCCCCC
Confidence 567777777764322 359999999998887665321 1 1233 355 555677533221 111100000
Q ss_pred --EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCc
Q 037063 250 --RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATAL 322 (588)
Q Consensus 250 --~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~ 322 (588)
.+..+|. -|.+++++.|... ....++...|++.-+....|.+.| ++.+ ++|+++|+++|+|.+|.
T Consensus 204 ~~~~~~~~~------~d~~~l~~~l~~~--~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t 275 (459)
T PRK11522 204 LPGFRHVPF------GNIEAMRTALSEC--KKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQT 275 (459)
T ss_pred CCCCcccCC------CCHHHHHHHHHHh--hccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEecccee
Confidence 1112222 1567888888621 111245788899999999999998 8888 99999999999999974
Q ss_pred C-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccC--CCCCCCceEeeecCCCcccccccc
Q 037063 323 G-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSG--STSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 323 ~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~--~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
. +. -....++ .||++ .+-|-+|.+-.-+|+++++++.++.+.. ..+
T Consensus 276 G~GRtG~~~a~e~~gv---~PDiv--t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~--------------------- 329 (459)
T PRK11522 276 GMGRTGKMFACEHENV---QPDIL--CLAKALGGGVMPIGATIATEEVFSVLFDNPFLH--------------------- 329 (459)
T ss_pred cCCccchhhhhhccCC---CCCEE--EechhhhCCCccceeEEEcHHHHHHhccCCccc---------------------
Confidence 3 21 1122332 48976 5689776210127999999887664421 111
Q ss_pred cccccccCCCC--CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC-eE-EEeCCCCCC
Q 037063 395 DESSQSKFPES--SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIP-LV-RIYGPKVMF 470 (588)
Q Consensus 395 ~~~~f~e~GT~--~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~-~v-~i~~p~~~~ 470 (588)
.+|. |..+ .++..+.|+.+++ +.+.++++.+.++|.++|+++... .| .+ .+-
T Consensus 330 -------~~T~~gnp~~---~Aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~-----~~~~i~~Vr------ 385 (459)
T PRK11522 330 -------TTTFGGNPLA---CAAALATINVLLE---QNLPAQAEQKGDYLLDGFRQLARE-----YPDLVQEAR------ 385 (459)
T ss_pred -------CCCCCCCHHH---HHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHHHHHHh-----CCCceeeEE------
Confidence 1122 1111 2444566776655 457889999999999999887311 12 11 221
Q ss_pred CcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC
Q 037063 471 DRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT 550 (588)
Q Consensus 471 ~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~ 550 (588)
.+|.++.+.+.+.+ ....+.+.+.++||.+.... .+..++|+.+....
T Consensus 386 G~Gl~~giel~~~~----~~~~i~~~l~~~Gvl~~~~~----------------------------~~~~~lr~~Ppl~~ 433 (459)
T PRK11522 386 GKGMLMAIEFVDNE----IGYNFASEMFRQRVLVAGTL----------------------------NNAKTIRIEPPLTL 433 (459)
T ss_pred eceeEEEEEecCch----HHHHHHHHHHHCCeEEEecC----------------------------CCCCEEEEECCccC
Confidence 24678888775421 13456666777899885320 11238999999999
Q ss_pred CHHHHHHHHHHHHHhhhh
Q 037063 551 NFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 551 t~eDv~~li~~l~~~l~~ 568 (588)
|.+||+++++.+.+.+++
T Consensus 434 t~~~id~~l~~l~~~l~~ 451 (459)
T PRK11522 434 TIEQCEQVLKAARKALAA 451 (459)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998865
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-10 Score=126.52 Aligned_cols=346 Identities=9% Similarity=0.039 Sum_probs=202.7
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
++.-|+|..+. |--.+.+.+++.+.+.....+.+ .+ ...+...+
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~------------------------~~------~~~~~~~~ 90 (433)
T PRK08117 41 DGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPS------------------------GV------IYYESILK 90 (433)
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccc------------------------cc------cCCHHHHH
Confidence 67889998664 33567788887666533111100 00 01345568
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHH-----hcC-----CEE
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSK-----KRG-----ARV 251 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~-----~~G-----~~v 251 (588)
+.+++++++.- ....|.|++++++|+..++.....-.|. +|+ ....||......+ .+.. ..+ ..+
T Consensus 91 la~~L~~~~~~--~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~-s~~~~~~~~~~~~~~~~~~~ 167 (433)
T PRK08117 91 LAEELAEITPG--GLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGAL-SVTTSKSKYRKYYQPLLGSV 167 (433)
T ss_pred HHHHHHHhCCC--CCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHH-hhcCCCccccccCCCCCCCc
Confidence 88888888732 2235999999999888776642111233 454 5556666333221 1100 000 112
Q ss_pred EEEeccCCCC---c--------cCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEE
Q 037063 252 SSAEFAWPNL---R--------IHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHV 315 (588)
Q Consensus 252 ~~v~~~~~~~---~--------i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~v 315 (588)
..+|...... . -+.+++++.+.+ .....+...|++.-+....|.+.| ++.| ++|+++|+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~ll 244 (433)
T PRK08117 168 YQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKH---QVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILL 244 (433)
T ss_pred EEeCCCccccccccCchhHHHHHHHHHHHHHHHh---ccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 3444321000 0 144556666651 011246888999999999999999 8889 9999999999
Q ss_pred EEeCCCcC-CCC-----CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccc
Q 037063 316 LLDATALG-SKD-----MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEII 389 (588)
Q Consensus 316 vvDaa~~~-~~d-----~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~ 389 (588)
|+|.++.. +.. ...++ ..+|+ .++.|.+|. ..-+|+++.++++++.+.....+ ++
T Consensus 245 I~DEv~tG~gr~G~~~~~~~~g---v~pDi--~t~sK~lg~-G~pigav~~~~~i~~~~~~~~~~--~T----------- 305 (433)
T PRK08117 245 IFDEVQTGFGRTGEWFAAQTFG---VVPDI--MTIAKGIAS-GLPLSAVVASKELMEQWPLGSHG--TT----------- 305 (433)
T ss_pred EEecchhccCccccchhHhhcC---CCCCE--eehhhhccC-CCcceeEEEcHHHHhhccCCCCC--CC-----------
Confidence 99999663 211 11222 23675 588997772 23388999998887655432211 00
Q ss_pred ccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCC
Q 037063 390 ELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKV 468 (588)
Q Consensus 390 ~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~ 468 (588)
| . .+..+ .++..++|+.+++ +.+.++++.+.+++.+.|.++... .+.+ .+
T Consensus 306 ---------~--~--~np~~---~aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~-----~~~~~~v----- 356 (433)
T PRK08117 306 ---------F--G--GNPVA---CAAALATLEVIKE---EKLLDNANEMGAYALERLEVLKEK-----HPVIGDV----- 356 (433)
T ss_pred ---------C--C--cCHHH---HHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhc-----CCceeee-----
Confidence 0 0 11111 2444566666644 457788888888888888876311 1111 11
Q ss_pred CCCcccEEEEEeecCCCCC--cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec
Q 037063 469 MFDRGPSLAFNVFDWNGTR--IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL 546 (588)
Q Consensus 469 ~~~rg~iv~f~~~~~~g~~--i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl 546 (588)
...|-++.+.+.+.++.. .....+.+.+.++||.+.... .+...+|+++
T Consensus 357 -rg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g----------------------------~~~~~lRl~p 407 (433)
T PRK08117 357 -RGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCG----------------------------NAGNVLRMIP 407 (433)
T ss_pred -ecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecC----------------------------CCCCEEEEeC
Confidence 123455666664322211 112345666777899875310 1112899999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhh
Q 037063 547 GCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 547 g~~~t~eDv~~li~~l~~~l~~ 568 (588)
.+..|.+||+++++.|.+.+++
T Consensus 408 ~~~~t~~~i~~~~~~l~~~l~~ 429 (433)
T PRK08117 408 PLTVTKEEIDEGLDILDEALTE 429 (433)
T ss_pred CccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988764
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-10 Score=125.32 Aligned_cols=335 Identities=13% Similarity=0.109 Sum_probs=201.9
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|..+..|||..+. |--.+.+.+++.+.+.... .++ ... ..+..
T Consensus 71 D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~---~~~-------------------~~~---------~~~~~ 119 (442)
T TIGR03372 71 DTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQP---LHS-------------------QEL---------LDPLR 119 (442)
T ss_pred ECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCC---Ccc-------------------ccc---------CCHHH
Confidence 4478899996544 6667888888876663211 000 000 13444
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C--CCCC-eEE-EcCCCchhHHHHHHHHHHh----c-----
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F--YSNP-RLL-TVYDHENEAAALMIESSKK----R----- 247 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~--~~gd-~ll-~~~e~~s~~~~~~~~~a~~----~----- 247 (588)
.++-+++++.+.... ..+.|+.++|+|+.++++.-. . +.|. +|+ ....||...... ...... .
T Consensus 120 ~~lAe~L~~~~p~~~--~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~-ls~t~~~~~~~~~~p~ 196 (442)
T TIGR03372 120 ALLAKTLAALTPGKL--KYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGA-LSATAKPAFRKPFMPL 196 (442)
T ss_pred HHHHHHHHHhCCCCc--CEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHH-hhccCCcccCCCCCCC
Confidence 567777777764322 359999999998887665321 1 1243 355 556677633222 111100 0
Q ss_pred CCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCc
Q 037063 248 GARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATAL 322 (588)
Q Consensus 248 G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~ 322 (588)
...+..+|++ |.+++++.+... .....+...|++.-+...-|.+.| ++.| ++|+++|+++|+|.+|.
T Consensus 197 ~~~~~~~p~~------d~~~~~~~l~~~--~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~t 268 (442)
T TIGR03372 197 LPGFHHVAFG------DIEAMLKALNEC--KKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQT 268 (442)
T ss_pred CCCCEEeCCC------CHHHHHHHHHHH--hcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeeccc
Confidence 0113334432 456777777520 112246888889888888999999 8889 99999999999999974
Q ss_pred C-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccC--CCCCCCceEeeecCCCcccccccc
Q 037063 323 G-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSG--STSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 323 ~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~--~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
. +. -....+ ..||+++ +-|-+|.+-.-+|++++++++.+.+.. ..++
T Consensus 269 G~GRtG~~~a~e~~g---v~PDivt--~gK~lg~G~~Pigavv~~~~i~~~~~~~~~~~~-------------------- 323 (442)
T TIGR03372 269 GMGRTGKMFACEHEG---VQPDILC--LAKALGGGVMPIGATIATEAVFSVLFDNPFLHT-------------------- 323 (442)
T ss_pred CCCccccchhhhhcC---CCCCeee--ehhhhcCCcccceEEEecHHHHHhhhccCcccc--------------------
Confidence 3 21 012233 3489876 789666210127888888887765521 1111
Q ss_pred cccccccCCCC--CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC-e-EEEeCCCCCC
Q 037063 395 DESSQSKFPES--SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIP-L-VRIYGPKVMF 470 (588)
Q Consensus 395 ~~~~f~e~GT~--~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~-~-v~i~~p~~~~ 470 (588)
+|. |..+ .++..++|+.+++ +.+.++.+.+.++|++.|.++.-. .| . ..+-
T Consensus 324 --------~T~~gnp~~---~Aaa~a~L~~i~~---~~l~~~~~~~G~~l~~~L~~l~~~-----~~~~i~~vR------ 378 (442)
T TIGR03372 324 --------TTFGGNPLA---CAAALATINELLE---KNLPAQAAIKGDFLLDGFQQLAAE-----YPDLIIEAR------ 378 (442)
T ss_pred --------CCCCCCHHH---HHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHh-----CCCceEEEe------
Confidence 111 1111 2444567777765 446778888888888888776211 11 1 1221
Q ss_pred CcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC
Q 037063 471 DRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT 550 (588)
Q Consensus 471 ~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~ 550 (588)
.+|.++.+.+.+. -....+.+.+.++||.+.... .+..++|+++....
T Consensus 379 G~Gl~~giel~~~----~~~~~i~~~l~~~Gvl~~~~~----------------------------~~~~~lr~~Ppl~~ 426 (442)
T TIGR03372 379 GKGLLMAIEFRDN----EIGYAFAKELFQQNILVAGTL----------------------------NNAKSIRIEPPLTI 426 (442)
T ss_pred cceEEEEEEeCCh----HHHHHHHHHHHHCCcEEeecC----------------------------CCCCEEEEECCccc
Confidence 3467787877542 113456666777899885310 11128999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 037063 551 NFEDTYRLWAFVSRFL 566 (588)
Q Consensus 551 t~eDv~~li~~l~~~l 566 (588)
|.+||+++++.+.+.|
T Consensus 427 t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 427 TIEQCALVIKAAKDAL 442 (442)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999988754
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-10 Score=124.54 Aligned_cols=348 Identities=11% Similarity=0.079 Sum_probs=199.7
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
.++..|||..+. |--.+.+.+++.+.+......++ .. . ..+...
T Consensus 38 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~-----------------------~~-----~--~~~~~~ 87 (443)
T PRK08360 38 IEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTP-----------------------IY-----G--FPVEPL 87 (443)
T ss_pred CCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCccc-----------------------cc-----c--CcHHHH
Confidence 368889997554 56677888887666643111100 00 0 023344
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCe-EE-EcCCCchhHHHHHHHHHH-----hc--C--CEE
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPR-LL-TVYDHENEAAALMIESSK-----KR--G--ARV 251 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~-ll-~~~e~~s~~~~~~~~~a~-----~~--G--~~v 251 (588)
++-+++.+.+...- ..|.|+.++|+|+..++..-..-.|.+ |+ ....||......+ .... +. + ..+
T Consensus 88 ~la~~L~~~~p~~~--~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~-s~~~~~~~~~~~~~~~~~~ 164 (443)
T PRK08360 88 LLAEKLIEIAPGDN--PKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAM-SLTGLDFPVRALVGELSDV 164 (443)
T ss_pred HHHHHHHHhCCCCC--CEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHH-HhcCCCcccccCCCCCCCc
Confidence 66667777765432 259999999998887665332113443 55 4445665322221 1100 00 1 123
Q ss_pred EEEeccCCCCc------------cCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcE
Q 037063 252 SSAEFAWPNLR------------IHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWH 314 (588)
Q Consensus 252 ~~v~~~~~~~~------------i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~ 314 (588)
.+++.. .... -+.+.+++.+.+ ....++++.|++.-+.+++|...| +++| ++|+++|++
T Consensus 165 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~l 240 (443)
T PRK08360 165 HYIPYP-DCYRCPFGKEPGSCKMECVEYIKEKFEG---EVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGIL 240 (443)
T ss_pred EEEeCC-ccccccccCchhhhHHHHHHHHHHHHHh---ccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 444432 1000 123345555541 111256888888888899999988 6667 899999999
Q ss_pred EEEeCCCcC-CCCCC--CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccc
Q 037063 315 VLLDATALG-SKDMD--TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIEL 391 (588)
Q Consensus 315 vvvDaa~~~-~~d~~--~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~ 391 (588)
+|+|.++.. +..-. ....-...+|++ ++.|.+|. ...+|+++.++++++.+...... .+
T Consensus 241 lI~DEv~~g~gr~G~~~a~~~~~~~pDii--tlsK~l~~-G~pigav~~~~~i~~~~~~~~~~--~T------------- 302 (443)
T PRK08360 241 LVVDEVQSGLGRTGKWFAIEHFGVEPDII--TLGKPLGG-GLPISATIGRAEIMDSLPPLAHA--FT------------- 302 (443)
T ss_pred EEEeccccCCCcCccchhhhhcCCCCCEE--EecccccC-CceeEEEEEcHHHHhhhcCCCCC--CC-------------
Confidence 999999653 21111 111112348876 55998772 23489999998887766432211 00
Q ss_pred ccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCC
Q 037063 392 ETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFD 471 (588)
Q Consensus 392 ~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~ 471 (588)
-.| .+.. .++..++|+.+.+ +.+.++++.+.+++++.|+++... .+.+ +. -..
T Consensus 303 ---------~~~-~p~~----~aaa~a~l~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~-----~~~v---~~--vrg 355 (443)
T PRK08360 303 ---------LSG-NPVA----SAAALAVIEEIEE---KNLLKRAEKLGNYTKKRLEEMKKK-----HELI---GD--VRG 355 (443)
T ss_pred ---------CCc-CHHH----HHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHh-----CCCe---ee--eec
Confidence 001 1111 1344566666655 356788888888888888775211 1212 11 013
Q ss_pred cccEEEEEeecCCCC-CcC---HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecC
Q 037063 472 RGPSLAFNVFDWNGT-RID---PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALG 547 (588)
Q Consensus 472 rg~iv~f~~~~~~g~-~i~---~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg 547 (588)
+|.++.+.+.+.... .-+ ...+...+.++||.+... +...+|+++.
T Consensus 356 ~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------------------------------~~~~lr~~P~ 405 (443)
T PRK08360 356 IGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFF------------------------------SGNVLRIQPP 405 (443)
T ss_pred cceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeec------------------------------CCCEEEEeCC
Confidence 566777766432111 011 234556677789987531 1128999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhh
Q 037063 548 CLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 548 ~~~t~eDv~~li~~l~~~l~~ 568 (588)
+..|.+||+++++.+.+.++.
T Consensus 406 l~~t~~~id~~~~~l~~~l~~ 426 (443)
T PRK08360 406 LTIEKEVLDEGLDILEEAIED 426 (443)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998865
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-10 Score=120.31 Aligned_cols=350 Identities=11% Similarity=0.061 Sum_probs=212.5
Q ss_pred CCCCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|..+..|||..+ .|--.+.+++++.+++..-...+ .... ..+..
T Consensus 52 DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~--------------------------~~~~----~~e~~ 101 (447)
T COG0160 52 DVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTH--------------------------TRDL----YYEPY 101 (447)
T ss_pred eCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhccc--------------------------CCcc----cchhH
Confidence 347889999888 36677889998876664321111 1111 02445
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCe-EE-EcCCCchhHHHHHHHHH----Hhc-----CCE
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPR-LL-TVYDHENEAAALMIESS----KKR-----GAR 250 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~-ll-~~~e~~s~~~~~~~~~a----~~~-----G~~ 250 (588)
.+.-+++.+++-.+ ....++|+.++++|+..+++.-....|.. |+ +...||......|.-.. .+. ...
T Consensus 102 v~~ae~L~~~~p~~-~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~ 180 (447)
T COG0160 102 VELAEKLTALAPGS-GLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPG 180 (447)
T ss_pred HHHHHHHHHhCCcc-cCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCC
Confidence 56666777766653 23459999999999998877543334443 55 66777764443332111 111 123
Q ss_pred EEEEeccCCCC-----------ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcE
Q 037063 251 VSSAEFAWPNL-----------RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWH 314 (588)
Q Consensus 251 v~~v~~~~~~~-----------~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~ 314 (588)
|..+|...+.. .-..+.+++.|.. ......+...|++.-++..-|.+.| ++++ ++|++||++
T Consensus 181 v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~--~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gil 258 (447)
T COG0160 181 VYHVPYPNPYRCPFGIGGEECGDDALEYIERALFD--LEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGIL 258 (447)
T ss_pred eEEecCCccccCcccCchhhhhHHHHHHHHHHHHh--hcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 66676642211 1123345554541 1233457889999999999999987 3346 889999999
Q ss_pred EEEeCCCcC-C-----CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcc
Q 037063 315 VLLDATALG-S-----KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEI 388 (588)
Q Consensus 315 vvvDaa~~~-~-----~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~ 388 (588)
+|+|.+|.. + .-++..++ .||++++ .|-+|. ..-+|.++.|+++.+ ..+...+ ++
T Consensus 259 lI~DEVQtG~GRTG~~fa~E~~gv---~PDivt~--aK~ig~-G~Pl~avv~r~ei~~-~~~g~~~--~T---------- 319 (447)
T COG0160 259 LIADEVQTGFGRTGKMFAFEHFGV---EPDIVTL--AKSLGG-GLPLSAVVGRAEIMD-WPPGGHG--GT---------- 319 (447)
T ss_pred EEEeccccCCCccccchhhhhcCC---CCCEEEe--cccccC-CCceeEEeccHHhcc-cCCcccC--CC----------
Confidence 999999876 2 12344443 4898775 485552 334899999998866 3333222 11
Q ss_pred cccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCC
Q 037063 389 IELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKV 468 (588)
Q Consensus 389 ~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~ 468 (588)
-.|.| .+ .++..+.|+.+++ +++.+|...+-++|+++|.+|.-. ..++++-
T Consensus 320 ------------f~GNp--va---~Aaa~AvL~vie~---e~L~~~a~~~G~~l~~~L~~l~~~--------~~~IgdV- 370 (447)
T COG0160 320 ------------FGGNP--VA---CAAALAVLDVIEE---ENLLERAAELGEYLRDRLEELQEK--------HPLIGDV- 370 (447)
T ss_pred ------------CCcCH--HH---HHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHHHHHhh--------cCceecc-
Confidence 01111 11 1333345555544 578899999999999999887422 2233431
Q ss_pred CCCcccEEEEEeecCCCCC-cC---HHHHHHHHHhCCcEecc-ccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEE
Q 037063 469 MFDRGPSLAFNVFDWNGTR-ID---PALVQKLADRHNISLSC-GFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVT 543 (588)
Q Consensus 469 ~~~rg~iv~f~~~~~~g~~-i~---~~~v~~~l~~~gI~v~~-G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vR 543 (588)
.-+|-++...+....++. -+ .+.+...+.++|+.+.+ |. ...+||
T Consensus 371 -RG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~-----------------------------~~nviR 420 (447)
T COG0160 371 -RGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGP-----------------------------HGNVLR 420 (447)
T ss_pred -cccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCC-----------------------------CCcEEE
Confidence 134566666665432211 12 23466677778986643 21 112999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 544 AALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 544 vSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+.+-..-+.|++|.+++.|.+.|++
T Consensus 421 i~PPL~is~e~~d~~l~il~~al~~ 445 (447)
T COG0160 421 ILPPLTISDEELDEGLDILEEALKE 445 (447)
T ss_pred EeCCcccCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988764
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-10 Score=126.13 Aligned_cols=418 Identities=13% Similarity=0.105 Sum_probs=231.1
Q ss_pred CccchHHHhhhhHhhhccccCCCCCCCCCCCCcchHHHHHHHHHh--CCCCCCchhH------HHHHhh-hccCCCCCCe
Q 037063 42 SPRTAAAARHEFKVTTTSSLFPNAHFTNHESLPSLQESFANFTKV--FPQYLQTDQA------DRIRAQ-DYFHLSLNNY 112 (588)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~f~~~--~p~y~~~~~~------~~iR~~-~f~~l~~~~~ 112 (588)
.++|....-++-..+.+++....+.|+...+++....-...|..- +=.|...... --.|.+ .|- .|..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~i~~~~G~~l-~D~dG~ 89 (504)
T PLN02760 11 ARSTQVNLLKHYAATASLAPASARIFSTEASLQKEDSEENGFKGHDMLAPFTAGWQSTDLEPLVIEKSEGSYV-YDINGK 89 (504)
T ss_pred hhhhhHHHHHHHHHhhccchHHHHHhccCCCccccchhhhhhccCCcccCcccccccccCCCceEEeeeeeEE-EECCCC
Confidence 356666666666666666566666676666665444333333321 0011100000 000111 111 133678
Q ss_pred eeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHH
Q 037063 113 VCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRK 186 (588)
Q Consensus 113 vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~ 186 (588)
-|||..+ .|--.+.+++++.+.+.......+ .. + ...+...++-+
T Consensus 90 ~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~-----------------------~~-----~-~~~~~~~~lae 140 (504)
T PLN02760 90 KYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHS-----------------------FW-----N-RTTKPSLDLAK 140 (504)
T ss_pred EEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceec-----------------------cc-----c-cCcHHHHHHHH
Confidence 9999655 455667788887666643111000 00 0 01344556777
Q ss_pred HHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC------CCCCC-eEE-EcCCCchhHHHHHHHHHH------hcCC---
Q 037063 187 RIMDFMNISEDDYTLVFTANQSSAFKLLAESYP------FYSNP-RLL-TVYDHENEAAALMIESSK------KRGA--- 249 (588)
Q Consensus 187 ~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~------~~~gd-~ll-~~~e~~s~~~~~~~~~a~------~~G~--- 249 (588)
++.+++.-. +-..+.|++++++|+..++.... -+++. +|+ ....||......+ .+.. ..+.
T Consensus 141 ~L~~~~~~~-~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~-slsg~~~~~~~~~~~~~ 218 (504)
T PLN02760 141 ELLEMFTAR-KMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISA-SLSGLPALHQKFDLPAP 218 (504)
T ss_pred HHHhhcCCC-CCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhh-hccCChhhccCCCCCCC
Confidence 777765321 11259999999999887776441 11333 354 5666776433221 1110 1110
Q ss_pred EEEEEeccC------CCC------ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcC
Q 037063 250 RVSSAEFAW------PNL------RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKG 312 (588)
Q Consensus 250 ~v~~v~~~~------~~~------~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g 312 (588)
.+..++.+. +.. ....++|++++. +...++...|++.-+....|.+.| ++.| ++|+++|
T Consensus 219 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~----~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g 294 (504)
T PLN02760 219 FVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLIL----KEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYD 294 (504)
T ss_pred CcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHH----hcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 122232210 000 011245676664 112246788888888888899999 9999 9999999
Q ss_pred cEEEEeCCCc-CCC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCC
Q 037063 313 WHVLLDATAL-GSK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFS 386 (588)
Q Consensus 313 ~~vvvDaa~~-~~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~ 386 (588)
+++|+|.++. ++. -...+++ .||+ ..+-|.+|.+-.-+|++++++++++.+....... +.
T Consensus 295 ~lLI~DEV~TGfGRtG~~~a~e~~gv---~PDi--vtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~-~~-------- 360 (504)
T PLN02760 295 ILFIADEVICAFGRLGTMFGCDKYNI---KPDL--VSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKL-GS-------- 360 (504)
T ss_pred CEEEecchhhCCcccchhhHHHhcCC---CCcE--EEecccccCCccccceEeecHHHHhhhhcccccc-cC--------
Confidence 9999999973 431 0122333 3896 4557976621012788999998877664321000 00
Q ss_pred cccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeC
Q 037063 387 EIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYG 465 (588)
Q Consensus 387 ~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~ 465 (588)
|...+|.+-..+ ..++..++|+.+++ +.+.++++.+.++|++.|.++.. .+.+ .+-
T Consensus 361 ------------~~h~~T~~gnPl-~~Aaala~Le~i~~---~~l~~~~~~~g~~l~~~L~~l~~------~~~v~~vr- 417 (504)
T PLN02760 361 ------------FAHGFTYSGHPV-SCAVALEALKIYKE---RNIPEHVNKIAPRFQDGIKAFSG------SPIIGEIR- 417 (504)
T ss_pred ------------cccCCCCCCCHH-HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHhc------CCCeeeEE-
Confidence 001122222111 12444466666655 46788899999999999988621 1222 121
Q ss_pred CCCCCCcccEEEEEeecCCC--CCcC-----HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCC
Q 037063 466 PKVMFDRGPSLAFNVFDWNG--TRID-----PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSG 538 (588)
Q Consensus 466 p~~~~~rg~iv~f~~~~~~g--~~i~-----~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g 538 (588)
.+|.++.+.+.+..+ +... ...+.+.+.++||.++.. .
T Consensus 418 -----G~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~-----------------------------g- 462 (504)
T PLN02760 418 -----GTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVA-----------------------------G- 462 (504)
T ss_pred -----eCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEec-----------------------------C-
Confidence 346677777654322 1111 234556667789987642 1
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 539 VSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 539 ~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
..+|+++.+..|.+||+++++.+.+.|++
T Consensus 463 -~~lrl~Ppl~it~eeid~~~~~l~~al~~ 491 (504)
T PLN02760 463 -DNIMMSPPLIITPEEVDELISIYGKALKA 491 (504)
T ss_pred -CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 17999999999999999999999998875
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-10 Score=122.84 Aligned_cols=347 Identities=10% Similarity=0.048 Sum_probs=197.1
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|.++.-|||..+. |--.+.+.+++.+.+... +..+ .... ..+..
T Consensus 35 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~--~~~~-------------------~~~~---------~~~~~ 84 (425)
T PRK09264 35 DEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRD--GITH-------------------GLDM---------HTTAK 84 (425)
T ss_pred eCCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhc--cccc-------------------cccc---------CcHHH
Confidence 3468889997544 666788888887666321 1000 0000 12334
Q ss_pred HHHHHHHHHHhCCCC-CCceEEEe-cCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHH----h--cC---
Q 037063 182 SKIRKRIMDFMNISE-DDYTLVFT-ANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSK----K--RG--- 248 (588)
Q Consensus 182 ~~~r~~ia~~lga~~-~e~~vvft-~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~----~--~G--- 248 (588)
.++-+++++.+..+. -++.++|+ +++|+|+..+++....-.|. +|+ ....||......+ .... + .|
T Consensus 85 ~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~l-s~~~~~~~~~~~~~~~ 163 (425)
T PRK09264 85 REFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSL-AVTGNSHKRQGAGVPL 163 (425)
T ss_pred HHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHH-HhcCCcccccCCCCCC
Confidence 456666666653321 11247675 79999887666543222344 455 4556776333221 1110 1 11
Q ss_pred CEEEEEeccCCC--CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCC
Q 037063 249 ARVSSAEFAWPN--LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATA 321 (588)
Q Consensus 249 ~~v~~v~~~~~~--~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~ 321 (588)
..+..+|..... ..-+.+++++.|.+. ....+++..|++.-+....|...+ ++.| ++|+++|+++|+|.++
T Consensus 164 ~~~~~~p~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~ 241 (425)
T PRK09264 164 NNVTRMPYDGYFGGDVDTLAYLEKLLEDS--SSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQ 241 (425)
T ss_pred CCeEEeCCCCccccchhHHHHHHHHHHhc--cCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechh
Confidence 134455542100 012567788888620 011135778888888888888663 6667 9999999999999997
Q ss_pred cC-C---C--CCCCCCCCCCCCcEEEeccCccCCCCCCc--eEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccc
Q 037063 322 LG-S---K--DMDTLGLSLFKPDFLICSFYKIFGENPSG--FGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELET 393 (588)
Q Consensus 322 ~~-~---~--d~~~l~l~~~~~D~vv~S~~K~~G~~P~G--~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~ 393 (588)
.. + . .....+ ..||++++| |.+| +.| +|++++++++ ..+.+...+ ++
T Consensus 242 tG~GrtG~~~~~~~~~---v~PDi~t~~--K~l~--~~G~pigav~~~~~i-~~~~~~~~~--~T--------------- 296 (425)
T PRK09264 242 AGCGRTGTFFSFERAG---ITPDIVTLS--KSIS--GYGLPMALVLIKPEL-DVWKPGEHN--GT--------------- 296 (425)
T ss_pred hCCccccHHHHHhhcC---CCCCEEEec--cccC--CCccceEEEEEchhh-hccCCCccC--CC---------------
Confidence 42 1 0 012223 348987664 9777 334 5999998775 322211111 00
Q ss_pred ccccccccCCCCCccchhhHHHHHHHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc
Q 037063 394 LDESSQSKFPESSISGVSSKLVECKGL-DHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR 472 (588)
Q Consensus 394 ~~~~~f~e~GT~~~~~~~~~~al~~aL-~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r 472 (588)
| . .+..+ .++..+++ +.+. -+.+.++++.+.+++.+.|.++.-. .+.+ + .+ . ...
T Consensus 297 -----~--~--gnp~~---~aaa~a~l~~~~~---~~~l~~~~~~~g~~l~~~l~~l~~~-----~~~~-~-~~-v-rg~ 352 (425)
T PRK09264 297 -----F--R--GNNLA---FVTATAALEEYWS---DDAFEKEVKAKGELVRERLEEIAAK-----YPGL-G-AE-V-RGR 352 (425)
T ss_pred -----C--C--CCHHH---HHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHh-----CCCc-e-ec-c-eec
Confidence 0 1 11111 13333555 3322 2568888899999998888776211 1212 1 11 0 124
Q ss_pred ccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCH
Q 037063 473 GPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNF 552 (588)
Q Consensus 473 g~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~ 552 (588)
|.++.+.+.+. .....+.+.+.++||.+.... .+...||+++.+..|.
T Consensus 353 Gl~~~i~l~~~----~~~~~l~~~~~~~Gv~~~~~~----------------------------~~~~~lr~~p~l~~t~ 400 (425)
T PRK09264 353 GMMQGIDFGDG----ELAGKIAAEAFENGLIIETSG----------------------------PEDEVVKLLPPLTIDE 400 (425)
T ss_pred ccEEEEEecCh----HHHHHHHHHHHHCCCEEeccC----------------------------CCCCEEEEeCCCCCCH
Confidence 56667776541 123456777778899886421 1112899999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 037063 553 EDTYRLWAFVSRFLDA 568 (588)
Q Consensus 553 eDv~~li~~l~~~l~~ 568 (588)
+||+++++.|.+.+++
T Consensus 401 ~ei~~~~~~l~~~l~~ 416 (425)
T PRK09264 401 EELEEGLDILEEAVAE 416 (425)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998876
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-10 Score=116.44 Aligned_cols=322 Identities=15% Similarity=0.150 Sum_probs=190.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCC-ceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 178 SELESKIRKRIMDFMNISEDD-YTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e-~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.+++..+++.....++.++.+ -+|++|+|.|.|+..+.+.+ .++||.|+++ +.+.+ + .+..+..|++++.|+
T Consensus 103 peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~-~N~gd~vlie~~ty~~-A----L~s~~a~gv~~ipv~ 176 (472)
T KOG0634|consen 103 PELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTL-INRGDHVLIEEYTYPS-A----LQSMEALGVKIIPVK 176 (472)
T ss_pred HHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHh-hcCCCceEEecccchH-H----HHhccccCceEEecc
Confidence 455556666444445555433 37999999999999999999 9999997765 33433 2 345577898888888
Q ss_pred ccCCCCccCHHHHHHHHhhhccc-cC-CCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCC----CcC--
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKK-KK-KKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDAT----ALG-- 323 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~-~~-~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa----~~~-- 323 (588)
.+ ...+++|.|++.+..-+.. .+ ....-|.++|.-+||||..++++. | ++||+|+.++|.|.. |+-
T Consensus 177 md--~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y 254 (472)
T KOG0634|consen 177 MD--QDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTY 254 (472)
T ss_pred cc--CCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeecccc
Confidence 76 3458999999999742111 11 224568899999999999999986 7 999999999999986 221
Q ss_pred -C---------------CC-C-CCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCC
Q 037063 324 -S---------------KD-M-DTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSF 385 (588)
Q Consensus 324 -~---------------~d-~-~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~ 385 (588)
| ++ + .-++++-.+--+=.-||.|+++. ..++|++.+.+-+++++-... ++.
T Consensus 255 ~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaP-GlRlG~it~~~~~l~ril~~a----e~~------ 323 (472)
T KOG0634|consen 255 NPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAP-GLRLGWITGNSLFLKRILDLA----EVA------ 323 (472)
T ss_pred CCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcC-cceeEEeecCHHHHHHHhhhc----cee------
Confidence 1 00 0 11222111112334599999994 578999999887765432111 110
Q ss_pred CcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHH----HHHHHHHHHHHHHHHHHcccCCCCCCCCC--
Q 037063 386 SEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLIL----ISNRARYLINWLANALMNLHHPHSETGIP-- 459 (588)
Q Consensus 386 ~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~----i~~r~~~L~~~l~~~L~~L~h~~~~~g~~-- 459 (588)
..|-..+.+ ..+.+-|+...+.|.-+ ++.-....++.+..+|.+. .|
T Consensus 324 ---------------t~~pSg~sq----~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~ky--------lp~~ 376 (472)
T KOG0634|consen 324 ---------------TSGPSGFSQ----GIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKY--------LPKS 376 (472)
T ss_pred ---------------ecCcccccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCC
Confidence 000011111 12223344333333222 2222223344555555552 22
Q ss_pred eEEEeCCCCCCCcccEEEEEee----cCCCCCcC--HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCC
Q 037063 460 LVRIYGPKVMFDRGPSLAFNVF----DWNGTRID--PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTN 533 (588)
Q Consensus 460 ~v~i~~p~~~~~rg~iv~f~~~----~~~g~~i~--~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~ 533 (588)
.+++..|. .|-.+-+++. +.+ .-++ .+.+...+.++||.+-.|..-.. +
T Consensus 377 ~~~~~~P~----aGmFiwv~i~~~~~~~~-~~i~q~~e~i~~~~vk~gV~~v~G~~F~v-------------------~- 431 (472)
T KOG0634|consen 377 VCEYHPPK----AGMFIWVEIPYINFDTK-KSINQIEEIIFIKAVKNGVKLVCGSWFMV-------------------D- 431 (472)
T ss_pred eeEEecCC----cceEEEEEecccccccc-cchHHHHHHHHHHHHHCCeEEecCceeEE-------------------c-
Confidence 24555542 3445555553 100 0122 23356677889999988843210 0
Q ss_pred CCcC-CccEEEEecCCCCCHHHHHHHHHHHHHhhhhhhc
Q 037063 534 ETRS-GVSVVTAALGCLTNFEDTYRLWAFVSRFLDADFV 571 (588)
Q Consensus 534 ~~~~-g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~~~ 571 (588)
+... +.-.+|+|+.++ ..|+++..++.+...+++.|-
T Consensus 432 p~~s~~kiffRls~a~a-~~e~l~~g~~rf~~~ike~f~ 469 (472)
T KOG0634|consen 432 PESSWSKIFFRLSIAFA-EPEKLDEGIERFGSVIKEHFI 469 (472)
T ss_pred CccCCCcceEEEEeecC-CHHHHHHHHHHHHHHHHHHhh
Confidence 0011 112899999876 456888888888877777664
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-10 Score=122.49 Aligned_cols=348 Identities=10% Similarity=0.022 Sum_probs=201.2
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|||..+. |--.+.+++++.+.+....+..+ . . ...+...+
T Consensus 50 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~~------------------------~-~-----~~~~~~~~ 99 (460)
T PRK06541 50 RGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPL------------------------W-S-----YAHPPAIE 99 (460)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCccc------------------------c-c-----cCCHHHHH
Confidence 68889997553 56677888888766643111000 0 0 01344456
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-----CCC-CeEE-EcCCCchhHHHHHHHHHH----hc--C-
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-----YSN-PRLL-TVYDHENEAAALMIESSK----KR--G- 248 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-----~~g-d~ll-~~~e~~s~~~~~~~~~a~----~~--G- 248 (588)
+-+++++++..+- ..|.|+.++++|+..++.... . ++| .+|+ ....||......+ .... +. +
T Consensus 100 la~~l~~~~p~~~--~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~-s~~~~~~~~~~~~~ 176 (460)
T PRK06541 100 LAERLAALAPGDL--NRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGAL-AITGLPAFKAPFEP 176 (460)
T ss_pred HHHHHHHhCCCCc--CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhh-cCcCChhhccccCC
Confidence 7777777764322 359999999998876655321 1 112 3455 4556665332221 1100 00 0
Q ss_pred --CEEEEEeccCCCCc-----cC--------HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHH
Q 037063 249 --ARVSSAEFAWPNLR-----IH--------SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVA 308 (588)
Q Consensus 249 --~~v~~v~~~~~~~~-----i~--------~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a 308 (588)
..+..+|.. ...+ -+ .+.+++.+. +...+....|++.-+.+..|.+.| ++.| ++|
T Consensus 177 ~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc 251 (460)
T PRK06541 177 LVPGGFRVPNT-NFYRAPELGDDPEAFGRWAADRIEEAIE----FEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREIC 251 (460)
T ss_pred CCCCcEEeCCC-ccccccccCCCHHHHHHHHHHHHHHHHH----hcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHH
Confidence 112333322 1000 01 255666665 112246788888888999999999 8888 999
Q ss_pred HHcCcEEEEeCCC-cCCCC-----CCCCCCCCCCCcEEEeccCccCCCCCC-ceEEEEEeCcchhcccCCCCCCCceEee
Q 037063 309 AEKGWHVLLDATA-LGSKD-----MDTLGLSLFKPDFLICSFYKIFGENPS-GFGCLFVKKSSASVLSGSTSSVSTIMGI 381 (588)
Q Consensus 309 ~~~g~~vvvDaa~-~~~~d-----~~~l~l~~~~~D~vv~S~~K~~G~~P~-G~G~L~v~~~~~~~l~~~~~g~~g~v~~ 381 (588)
+++|+++|+|.++ .++.. ...++ ..||+++ +.|.+|. .. -+|++++++++++.+.+.. . ..
T Consensus 252 ~~~g~llI~DEV~tGfGR~G~~~a~~~~g---v~PDivt--~gK~l~~-G~~pigav~~~~~i~~~~~~~~-~--~~--- 319 (460)
T PRK06541 252 DRYDVLLVSDEVICAFGRLGEMFGCERFG---YVPDIIT--CAKGITS-GYSPLGAMIASDRLFEPFLDGP-T--MF--- 319 (460)
T ss_pred HHcCCEEEEechhhCCCcCchhhhhhhcC---CCCCEEE--ecccccC-CccceeEEEEcHHHHHHhhcCC-C--cc---
Confidence 9999999999997 34310 11223 2489775 7897762 21 3899999998876554321 1 00
Q ss_pred ecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE
Q 037063 382 EPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV 461 (588)
Q Consensus 382 ~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v 461 (588)
+ -.+|..-..+ ..++..+.|+.+.+ +.+.++++.+.++|.+.|.++.- .+.+
T Consensus 320 -----------------~-~~~T~~gnp~-~~aaala~l~~l~~---~~~~~~~~~~g~~l~~~L~~l~~------~~~v 371 (460)
T PRK06541 320 -----------------L-HGYTFGGHPV-SAAVALANLDIFER---EGLLDHVRDNEPAFRATLEKLLD------LPIV 371 (460)
T ss_pred -----------------c-cCCCCCCCHH-HHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHhhc------CCCe
Confidence 0 0112222111 11333355555544 45678889999999999988620 1222
Q ss_pred EEeCCCCCCCcccEEEEEeecCCC--CCcC--------HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcC
Q 037063 462 RIYGPKVMFDRGPSLAFNVFDWNG--TRID--------PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSG 531 (588)
Q Consensus 462 ~i~~p~~~~~rg~iv~f~~~~~~g--~~i~--------~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~ 531 (588)
..+ ...|.++.+.+.+... +.+. ...+...+.++||.+....
T Consensus 372 ~~v-----rg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----------------------- 423 (460)
T PRK06541 372 GDV-----RGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADD----------------------- 423 (460)
T ss_pred EEE-----EecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecC-----------------------
Confidence 111 1346777777643211 1111 1234556667899886420
Q ss_pred CCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 532 TNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 532 ~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.|...||+++.+..|.+||+++++.+.+.+.+
T Consensus 424 -----~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~ 455 (460)
T PRK06541 424 -----RGDPVVQLAPPLISGQEEFDEIEQILRSVLTE 455 (460)
T ss_pred -----CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 12238999999999999999999999998865
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-11 Score=115.28 Aligned_cols=282 Identities=13% Similarity=0.122 Sum_probs=184.8
Q ss_pred CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCe-EEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHHH
Q 037063 193 NISEDDYTLVFTANQSSAFKLLAESYPFYSNPR-LLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMKK 271 (588)
Q Consensus 193 ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~-ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~ 271 (588)
+..++. |....|+.+.+.++++.. .-||.+ |+.....++-++ --|.-.+++|+.+|.+ ++..++.+.+.+.
T Consensus 83 pLt~dn--ic~GvGsDE~ID~iiR~~-c~PGkeKIl~cPPtysMY~----v~A~iNd~eVvkvpl~-pdF~lnvdai~ev 154 (375)
T KOG0633|consen 83 PLTSDN--ICVGVGSDELIDLIIRCV-CDPGKEKILDCPPTYSMYV----VDAAINDAEVVKVPLN-PDFSLNVDAIAEV 154 (375)
T ss_pred CCCccc--eEEecCcHHHHHHHHhhe-ecCCccceeecCCcceeEE----EEeecCCceEEEecCC-CCccccHHHHHHH
Confidence 444443 999999999999999988 789955 765444333111 1234468999999998 8999999999999
Q ss_pred HhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH-cCcEEEEeCC--CcCCCCCCCCCCC-CCCCcEEEeccCc
Q 037063 272 IVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE-KGWHVLLDAT--ALGSKDMDTLGLS-LFKPDFLICSFYK 346 (588)
Q Consensus 272 i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~-~g~~vvvDaa--~~~~~d~~~l~l~-~~~~D~vv~S~~K 346 (588)
+.. +...+++.++.+.||||.+...+.| ++.+- -+.+|+||.| .+.+ +...+.+- +++-=++.-.++|
T Consensus 155 l~~------ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg-~~S~~~lV~kYpNLivlqTlSK 227 (375)
T KOG0633|consen 155 LEL------DSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSG-VESRMKLVKKYPNLIVLQTLSK 227 (375)
T ss_pred Hhc------cccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeecc-ccccchHhHhCCceeehhhhhh
Confidence 873 2589999999999999999999999 55443 2689999998 3333 23344333 3333344559999
Q ss_pred cCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHh
Q 037063 347 IFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL 426 (588)
Q Consensus 347 ~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~ 426 (588)
-||.+..++|+.+...++++.|...... .|++. ++-..||+.+..-
T Consensus 228 sfGLAGiRvG~~~~~~~ia~iln~~KaP------------------------------YNiS~----~~s~~AL~Als~~ 273 (375)
T KOG0633|consen 228 SFGLAGIRVGYGAFPLSIAEILNRAKAP------------------------------YNISV----AGSVAALAALSDS 273 (375)
T ss_pred hcCcceeEeecccccHHHHHHHHhccCC------------------------------ccccc----hhHHHHHHhcCcc
Confidence 9997666788888888877655432211 11111 2223444444321
Q ss_pred C---HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEE-EeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCc
Q 037063 427 G---LILISNRARYLINWLANALMNLHHPHSETGIPLVR-IYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNI 502 (588)
Q Consensus 427 G---~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~-i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI 502 (588)
. |+..+.-+.+-+.+|...|..+ |.+. +.++ ....++...+.+-+ ...........+...|+
T Consensus 274 n~kkme~~rdaiv~er~RL~keLt~v---------~~~~~~~gg----~daNFiLi~v~~~~-n~~akkly~q~at~~gV 339 (375)
T KOG0633|consen 274 NGKKMEDVRDAIVRERERLFKELTEV---------PFLNDYPGG----SDANFILIEVTGGD-NGMAKKLYKQDATKMGV 339 (375)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhcC---------ccccCCCCc----ccccEEEEEEcCCC-cHHHHHHHHHHHHhcce
Confidence 1 5666666666666777777775 3332 2222 23455556655421 12344456677888999
Q ss_pred EeccccccCcccccchHHHHHHHHhhhcCCCCCcCC-ccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 503 SLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSG-VSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 503 ~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g-~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
.||.-.. + .| .+++||+.| |.|+-.-|++.+++|+
T Consensus 340 vVRfrgs-----------------e---------~~c~G~lRitvG---t~EentvL~k~~K~~l 375 (375)
T KOG0633|consen 340 VVRFRGS-----------------E---------EGCKGYLRITVG---TPEENTVLMKCLKQFL 375 (375)
T ss_pred EEEEcCC-----------------c---------cccceeEEEEcC---CcccchHHHHHHHhhC
Confidence 9985310 0 11 129999999 7899999999998875
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7e-10 Score=120.29 Aligned_cols=351 Identities=13% Similarity=0.085 Sum_probs=200.5
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+. |.-.+.+++++.+.+..-.+... . . ...+...
T Consensus 43 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~-----------------------~--~-----~~~~~~~ 92 (442)
T PRK13360 43 HDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPA-----------------------F--Q-----MGHPKAF 92 (442)
T ss_pred CCCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCccc-----------------------C--C-----cCCHHHH
Confidence 367889998655 77788888888666543111100 0 0 0124445
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-----CCC-CeEE-EcCCCchhHHHHHH-----HHHHhcC-
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-----YSN-PRLL-TVYDHENEAAALMI-----ESSKKRG- 248 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-----~~g-d~ll-~~~e~~s~~~~~~~-----~~a~~~G- 248 (588)
++-+++++++.... ..|.|+.++|+|+..++.... + +++ .+|+ ....||......+. ...+..+
T Consensus 93 ~la~~l~~~~p~~~--~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~ 170 (442)
T PRK13360 93 ELANRIAEIAPGGL--NHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGA 170 (442)
T ss_pred HHHHHHHHhCCCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCC
Confidence 77777888764221 259999999998877655321 1 122 3455 45566653221110 0000001
Q ss_pred --CEEEEEeccCCCCc--c----------CHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHH
Q 037063 249 --ARVSSAEFAWPNLR--I----------HSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAA 309 (588)
Q Consensus 249 --~~v~~v~~~~~~~~--i----------~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~ 309 (588)
..+..+|......+ + ..++|++++. ....++...|++.-+....|.+.| ++.| ++|+
T Consensus 171 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~----~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~ 246 (442)
T PRK13360 171 LLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVT----LHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICD 246 (442)
T ss_pred CCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHH----hcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence 12333443210000 0 1356777775 112256788999999999999999 9999 9999
Q ss_pred HcCcEEEEeCCCc-CCC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeec
Q 037063 310 EKGWHVLLDATAL-GSK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEP 383 (588)
Q Consensus 310 ~~g~~vvvDaa~~-~~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~ 383 (588)
++|+++|+|.++. ++. -....+ ..||++ .+-|.+|.+-.-+|++++++++.+.+......+ ..
T Consensus 247 ~~g~llI~DEv~tG~GrtG~~~a~~~~g---v~PDiv--t~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~-~~----- 315 (442)
T PRK13360 247 KHGILLIFDEVITGFGRLGAPFAAQYFG---VTPDLL--TCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAG-IE----- 315 (442)
T ss_pred HcCCEEEEechhhCCCCCccchhhhhcC---CCCcee--eeeeccccCccceEEEEEcHHHHHHhhcCCccc-cc-----
Confidence 9999999999973 331 012223 348976 568966521011788888888776553211000 00
Q ss_pred CCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-E
Q 037063 384 SFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-R 462 (588)
Q Consensus 384 ~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~ 462 (588)
.+ ..+|.....+ ..++..++|+.+++ +.+.++.+++.+++.+.|.++.. .+.+ .
T Consensus 316 --------------~~-~~~T~~g~pl-~~aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~l~~l~~------~~~v~~ 370 (442)
T PRK13360 316 --------------FF-HGYTYSGHPL-ACAAALATLDLYER---EGLLTRAARLAPYWEDALHSLRD------APHVID 370 (442)
T ss_pred --------------cc-cCCCCCCCHH-HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhc------CCCeee
Confidence 00 0112111111 12555577777766 34677888888889888887620 1211 1
Q ss_pred EeCCCCCCCcccEEEEEeecCCCCC-cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccE
Q 037063 463 IYGPKVMFDRGPSLAFNVFDWNGTR-IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSV 541 (588)
Q Consensus 463 i~~p~~~~~rg~iv~f~~~~~~g~~-i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~ 541 (588)
+- ..|.++.+.+....+.. -....+...+.++||.++.+ . ..
T Consensus 371 vr------G~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~-----------------------------~--~~ 413 (442)
T PRK13360 371 IR------NLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYT-----------------------------G--DI 413 (442)
T ss_pred ee------ccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEec-----------------------------C--CE
Confidence 11 23444455553321111 11234555666789987532 1 17
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 542 VTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 542 vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+|+++.+..|.+||+++++.|.+.|++
T Consensus 414 lr~~Ppl~~t~~eid~~~~~l~~~l~~ 440 (442)
T PRK13360 414 LALSPPLIIEEAQIDELFDILAQALKE 440 (442)
T ss_pred EEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988754
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.5e-10 Score=119.99 Aligned_cols=351 Identities=12% Similarity=0.061 Sum_probs=200.2
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+. |--.+.+.+++.+.+..... .+ .. ....+...
T Consensus 37 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~--~~----------------------~~------~~~~~~~~ 86 (421)
T PRK09792 37 VEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTH--TA----------------------YQ------IVPYESYV 86 (421)
T ss_pred CCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccC--cc----------------------cC------ccCCHHHH
Confidence 368889998654 66777888887666643111 00 00 00123334
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHH-----hcC-----CE
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSK-----KRG-----AR 250 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~-----~~G-----~~ 250 (588)
++-+++.+++... ....++|+.++|+|+..+++....-.|. +|+ ....||......+ .+.. +.+ ..
T Consensus 87 ~la~~l~~~~p~~-~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~-s~~~~~~~~~~~~~~~~~~ 164 (421)
T PRK09792 87 TLAEKINALAPVS-GQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTM-ALTGKVAPYKIGFGPFPGS 164 (421)
T ss_pred HHHHHHHHhCCCC-CCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHH-hhcCCCcccccCCCCCCCC
Confidence 5666677765421 1235999999999887666543222344 455 4556776333222 1110 111 11
Q ss_pred EEEEeccCCCCcc----CHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccC-C---HHHH-HHHHHcCcEEEEeCCC
Q 037063 251 VSSAEFAWPNLRI----HSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARY-S---YMWM-SVAAEKGWHVLLDATA 321 (588)
Q Consensus 251 v~~v~~~~~~~~i----~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~-p---l~~I-~~a~~~g~~vvvDaa~ 321 (588)
+..+|+......+ +.+.+++.+.+ ....++...|++.-+++++|... | +++| ++|+++|+++|+|.++
T Consensus 165 ~~~v~~p~~~~~~~~~~~~~~l~~~~~~---~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~ 241 (421)
T PRK09792 165 VYHVPYPSDLHGISTQDSLDAIERLFKS---DIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQ 241 (421)
T ss_pred cEEcCCCcccccccHHHHHHHHHHHHHh---ccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 3344442111112 23667777651 01124678888888899999876 7 6667 8999999999999985
Q ss_pred cC-CCCCCCCCCC--CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccc
Q 037063 322 LG-SKDMDTLGLS--LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESS 398 (588)
Q Consensus 322 ~~-~~d~~~l~l~--~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~ 398 (588)
.. +..-..+... ...+|+ .++.|.+|. ...+|+++.++++++.+.+...+ ++
T Consensus 242 tg~gr~G~~~a~~~~~~~pDi--~t~gK~l~~-G~pigav~~~~~i~~~~~~~~~~--~T-------------------- 296 (421)
T PRK09792 242 SGFARTGKLFAMDHYADKPDL--MTMAKSLAG-GMPLSGVVGNANIMDAPAPGGLG--GT-------------------- 296 (421)
T ss_pred cCCCCCCchhHHHhcCCCCcE--EEeehhhcC-CCceEEEEEcHHHHhccCCCCcC--CC--------------------
Confidence 43 2111111111 134884 677997662 34589999998887766432211 00
Q ss_pred cccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEE
Q 037063 399 QSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAF 478 (588)
Q Consensus 399 f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f 478 (588)
| .| +... .++..+.++++++ +++.++++.+.+++.+.|..|... .|.+. .+ ..+|.++.+
T Consensus 297 ~--~g--npl~---~aaa~a~l~~l~~---~~~~~~~~~~g~~l~~~l~~l~~~-----~p~v~--~v---rG~Gl~~~i 356 (421)
T PRK09792 297 Y--AG--NPLA---VAAAHAVLNIIDK---ESLCERANQLGQRLKNTLIDAKES-----VPAIA--AV---RGLGSMIAA 356 (421)
T ss_pred C--CC--CHHH---HHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHh-----CCCcc--ee---cccceEEEE
Confidence 0 11 1111 1334466666655 467778888888888888776311 12211 11 124567777
Q ss_pred EeecCC-CCC--cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHH
Q 037063 479 NVFDWN-GTR--IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDT 555 (588)
Q Consensus 479 ~~~~~~-g~~--i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv 555 (588)
.+.+.+ +.. .....+...+.++||.+... . ....+||+.+.+..+.+||
T Consensus 357 e~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~---g-------------------------~~~~~irl~P~l~i~~~ei 408 (421)
T PRK09792 357 EFNDPQTGEPSAAIAQKIQQRALAQGLLLLTC---G-------------------------AYGNVIRFLYPLTIPDAQF 408 (421)
T ss_pred EecCCccCCcchHHHHHHHHHHHHCCcEEeec---C-------------------------CCCCEEEEeCCCcCCHHHH
Confidence 765421 110 11344566666789988521 0 0012899999998999999
Q ss_pred HHHHHHHHHhhh
Q 037063 556 YRLWAFVSRFLD 567 (588)
Q Consensus 556 ~~li~~l~~~l~ 567 (588)
+++++.|.+.|.
T Consensus 409 ~~~~~~l~~~l~ 420 (421)
T PRK09792 409 DAAMKILQDALS 420 (421)
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5e-10 Score=121.74 Aligned_cols=346 Identities=11% Similarity=0.083 Sum_probs=201.3
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|..+..|||..+. |--.+.+++++.+.+......++ .. ..+..
T Consensus 49 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~--------------------------~~-----~~~~~ 97 (451)
T PRK06062 49 DYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAP--------------------------AH-----ANDAR 97 (451)
T ss_pred ECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCC--------------------------cc-----CCHHH
Confidence 3368899998654 66677888888766643111110 00 13444
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHH---hcC-----CEE
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSK---KRG-----ARV 251 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~---~~G-----~~v 251 (588)
.++-++|++++...- ..|.|+.++++|...+++....-.|. +|+ ....||...... ..... ... ..+
T Consensus 98 ~~lae~L~~~~p~~~--~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a-ls~~~~~~~~~~~~~~~~~ 174 (451)
T PRK06062 98 SEAARLIAERAPGDL--SKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSA-INLTGDPRRWPNDTGRAGV 174 (451)
T ss_pred HHHHHHHHHhCCCCC--CEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHH-HhhcCCcccccCCCCCCCC
Confidence 567777777764322 35999999999988776643222344 455 455666533222 11110 000 012
Q ss_pred EEEeccCCC-Cc----cC-------HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcE
Q 037063 252 SSAEFAWPN-LR----IH-------SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWH 314 (588)
Q Consensus 252 ~~v~~~~~~-~~----i~-------~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~ 314 (588)
..++..... .. -+ .++++++|+ ....++...|++.-+...-|.+.| ++.| ++|+++|++
T Consensus 175 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~----~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~l 250 (451)
T PRK06062 175 VHFFGPFLYRSEFHATTEEEECERALAHLERVIE----LEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIV 250 (451)
T ss_pred EEeCCCCccccccCCCChHHHHHHHHHHHHHHHH----hcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 222221110 00 11 466777775 112246788888888888899999 8889 999999999
Q ss_pred EEEeCCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcc
Q 037063 315 VLLDATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEI 388 (588)
Q Consensus 315 vvvDaa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~ 388 (588)
+|+|.++.. +. -...+++ .||+++ +-|.+|.+-.-+|++++++++++.+....+.. +.
T Consensus 251 LI~DEV~tGfGRtG~~~a~~~~gv---~PDi~t--~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~-~~---------- 314 (451)
T PRK06062 251 LIADEVMAGFGRTGKWFAIEHFGV---VPDLIT--FAKGVNSGYVPLGGVAISEAIAATFADRPYPG-GL---------- 314 (451)
T ss_pred EEeeccccCCCcCcHHHHHHhcCC---CCCeee--echhhhcCCcCcEEEEEcHHHHHHhccCCCCC-CC----------
Confidence 999999663 21 0122343 489664 68976621012788999988877664211000 00
Q ss_pred cccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHH-HHHHHHHHcccCCCCCCCCCeE-EEeCC
Q 037063 389 IELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLI-NWLANALMNLHHPHSETGIPLV-RIYGP 466 (588)
Q Consensus 389 ~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~-~~l~~~L~~L~h~~~~~g~~~v-~i~~p 466 (588)
-| .| +..+ .++..++|+.+++ +.+.++.+.+. +++.+.|+++... .+.+ .+-
T Consensus 315 ---------T~--~g--npl~---~Aaa~a~L~~l~~---~~l~~~~~~~G~~~l~~~L~~l~~~-----~~~v~~vr-- 368 (451)
T PRK06062 315 ---------TY--SG--HPLA---CAAAVATINAMEE---EGIVENAARIGAEVLGPGLRELAER-----HPSVGEVR-- 368 (451)
T ss_pred ---------CC--CC--CHHH---HHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhc-----CCcEEeEe--
Confidence 01 11 1111 2445567777665 44777777786 5777777775211 1221 221
Q ss_pred CCCCCcccEEEEEeecCCC--CCcC--------HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCc
Q 037063 467 KVMFDRGPSLAFNVFDWNG--TRID--------PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETR 536 (588)
Q Consensus 467 ~~~~~rg~iv~f~~~~~~g--~~i~--------~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~ 536 (588)
..|.++.+.+..... ..++ ...+.+.+.++||.+...
T Consensus 369 ----G~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~----------------------------- 415 (451)
T PRK06062 369 ----GLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVN----------------------------- 415 (451)
T ss_pred ----ccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeec-----------------------------
Confidence 245667776642111 1111 234666677789986421
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 537 SGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 537 ~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.+ .+|+++.+..|.+||+++++.+.+.|+.
T Consensus 416 ~~--~lrl~ppl~~t~~eid~~~~~l~~~l~~ 445 (451)
T PRK06062 416 GN--RIHVVPPCTVTEDEVREGLAILDAALAV 445 (451)
T ss_pred CC--EEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 11 8999999999999999999999998864
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-10 Score=122.45 Aligned_cols=335 Identities=13% Similarity=0.095 Sum_probs=186.6
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+. |.-++.+++++.+.+.... + ++. ..+...
T Consensus 45 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~----~----------------------------~~~-~~~~~~ 91 (423)
T TIGR00713 45 VDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGT----S----------------------------YGA-PTEAEI 91 (423)
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCC----c----------------------------CCC-CCHHHH
Confidence 368889997543 5667888988876663210 0 000 123456
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEE-EcCCCchhHHHHHHHHHHhcCCE----------
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLL-TVYDHENEAAALMIESSKKRGAR---------- 250 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~---------- 250 (588)
+++++|++++... ..|+|+.|+++|+..++.... +...++|+ ....||. ...++... ...|..
T Consensus 92 ~lae~l~~~~~~~---~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG-~~~~~~~~-~~~~~~~~~~~~~~~~ 166 (423)
T TIGR00713 92 LLAKEIISRVPSV---EMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHG-HHDALLVK-AGSGAATLGLPTSPGV 166 (423)
T ss_pred HHHHHHHHhCCcc---cEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCC-Chhhhhcc-ccCcccccCCCCCCCC
Confidence 8999999987643 259999999999887766421 23345665 4445664 22221110 001111
Q ss_pred -------EEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEe-CCCCCCCccCC----HHHH-HHHHHcCcEEEE
Q 037063 251 -------VSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFP-LQSKVTGARYS----YMWM-SVAAEKGWHVLL 317 (588)
Q Consensus 251 -------v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~-~~sn~tG~~~p----l~~I-~~a~~~g~~vvv 317 (588)
+..++. -++++|++.+.+ . .+++++|++. .++| +|.+.| +++| ++|+++|+++|+
T Consensus 167 ~~~~~~~~~~~~~------~d~~~l~~~i~~----~-~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~ 234 (423)
T TIGR00713 167 PEDFAKLTLVLPY------NDLEALEEVFEE----Y-GEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIF 234 (423)
T ss_pred CcccccceEEeCC------CCHHHHHHHHHH----c-CCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEE
Confidence 111111 268899988862 1 1456777775 5555 899988 5667 999999999999
Q ss_pred eCCCcCC-CC-CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccc
Q 037063 318 DATALGS-KD-MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLD 395 (588)
Q Consensus 318 Daa~~~~-~d-~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~ 395 (588)
|.++..- .. ......-...+|++ ++.|.+|. ...+|+++.++++++.+.+... ..
T Consensus 235 DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~l~~-G~pig~v~~~~~i~~~~~~~~~----~~---------------- 291 (423)
T TIGR00713 235 DEVMTGFRVALGGAQEYFGVEPDLT--TLGKIIGG-GLPVGAFGGRREIMERLAPEGP----VY---------------- 291 (423)
T ss_pred EccccccccCcchhHHHhCCCcchh--hhhhhhcC-CCceeeeeEHHHHHHhhCcCCC----ee----------------
Confidence 9996421 10 00000111237844 68998773 3448999999988877653110 00
Q ss_pred ccccccCCCCCccchhhHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 396 ESSQSKFPESSISGVSSKLVECKGLDHADALG-LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 396 ~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G-~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
..+|.....+ ..++..++|+.+++.+ ++.+.+....+.+.|.+.+.++ +.. +.+- .+|.
T Consensus 292 -----~~~T~~~~~~-~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~-~~v~------~~g~ 351 (423)
T TIGR00713 292 -----QAGTLSGNPL-AMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDT-------GIP-HTVN------RVGS 351 (423)
T ss_pred -----eccCCCCCHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhc-------CCC-eEEE------eecc
Confidence 0011111111 1244456777665532 2333344444444444444442 111 1111 2456
Q ss_pred EEEEEeecCCCC------CcCH---HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe
Q 037063 475 SLAFNVFDWNGT------RIDP---ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA 545 (588)
Q Consensus 475 iv~f~~~~~~g~------~i~~---~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS 545 (588)
++.+.+...... ..+. ..+.+.+.++||.+..+. . +.+|++
T Consensus 352 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------------------------~--~~~~l~ 401 (423)
T TIGR00713 352 MFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQ----------------------------F--EACFLS 401 (423)
T ss_pred EEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCC----------------------------c--cceeeE
Confidence 666655421100 0111 235555556899875320 1 267888
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhh
Q 037063 546 LGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 546 lg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+. .+.+||+.+++.|.+++++
T Consensus 402 ~~--~t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 402 AA--HTEEDIENTIEAAEEVFAE 422 (423)
T ss_pred CC--CCHHHHHHHHHHHHHHHhh
Confidence 65 6999999999999988764
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-10 Score=120.42 Aligned_cols=330 Identities=13% Similarity=0.099 Sum_probs=193.0
Q ss_pred CCCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
.++..|||..+ .|--.+.+.+++.+.+..-.. . ... + ..+...
T Consensus 12 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~--~---------------------~~~-----~---~~~~~~ 60 (382)
T PLN00144 12 VEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAH--V---------------------SNV-----Y---HTIPQV 60 (382)
T ss_pred CCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCC--c---------------------ccc-----c---cCHHHH
Confidence 36788999754 356677888888766643111 0 000 0 023334
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-C------C------CCeEE-EcCCCchhHHHHHHHHHHhc
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-Y------S------NPRLL-TVYDHENEAAALMIESSKKR 247 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-~------~------gd~ll-~~~e~~s~~~~~~~~~a~~~ 247 (588)
++-+++++.... + .|.|+.++|+|+..++..-. + . + ..+|+ ....||......+ ......
T Consensus 61 ~la~~l~~~~~~--~--~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~-s~~~~~ 135 (382)
T PLN00144 61 ELAKRLVASSFA--D--RVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGAL-ALTSKE 135 (382)
T ss_pred HHHHHHHhcCCC--C--eEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHH-hcCCCc
Confidence 666666666543 2 59999999998876655321 1 0 0 13455 5556775332221 110000
Q ss_pred ------C---CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCc
Q 037063 248 ------G---ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGW 313 (588)
Q Consensus 248 ------G---~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~ 313 (588)
+ -.+..+|.. |++.+++.+.. .+.+.|++.-++++.|...+ +++| ++|+++|+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~------d~~~l~~~~~~-------~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~ 202 (382)
T PLN00144 136 QYRTPFEPLMPGVTFVEYG------NLEAARKLIQK-------GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGA 202 (382)
T ss_pred cccccCCCCCCCeEEeCCC------CHHHHHHhcCC-------CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 0 012233321 57888887751 45667777667888555443 5567 99999999
Q ss_pred EEEEeCCCcC-CCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccc
Q 037063 314 HVLLDATALG-SKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIE 390 (588)
Q Consensus 314 ~vvvDaa~~~-~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~ 390 (588)
++|+|.++.. +.. +-...+....|| +.++.|.+|. ...+|++++++++++.+.+...+ .+
T Consensus 203 llI~DEv~tg~gr~g~~~~~~~~~~~PD--i~t~sK~l~~-G~pig~v~~~~~~~~~~~~~~~~--~T------------ 265 (382)
T PLN00144 203 LLVFDEVQCGLGRTGYLWAHEAYGVEPD--IMTLAKPLAG-GLPIGAVLVTEKVASAINPGDHG--ST------------ 265 (382)
T ss_pred EEEEechhhCCCccchHhhhhhcCCCCC--EEEecccccC-CcceEEEEEcHHHHhccCCCCCC--CC------------
Confidence 9999998543 211 111112223488 7778996662 34589999999887766543221 00
Q ss_pred cccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCC
Q 037063 391 LETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVM 469 (588)
Q Consensus 391 ~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~ 469 (588)
.+..++. .++..+.|+++++ +.+.++++.+.+++.+.|.++-.. .|.+ .+-
T Consensus 266 -----------~~~~pl~----~aaa~a~l~~i~~---~~~~~~~~~~g~~l~~~l~~~~~~-----~~~~~~vr----- 317 (382)
T PLN00144 266 -----------FAGGPLV----CNAALAVLDKISK---PGFLASVAKKGEYLRELLRRKLGG-----NPHVKEVR----- 317 (382)
T ss_pred -----------CCCCHHH----HHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHHHhh-----CCCceeee-----
Confidence 0111111 2445567787765 456777777777777777654111 1111 111
Q ss_pred CCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC
Q 037063 470 FDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL 549 (588)
Q Consensus 470 ~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~ 549 (588)
..|.++.+.+ + .....+...+.++||.+.++. . ..+||+++...
T Consensus 318 -g~G~~~~l~l-~-----~~~~~~~~~~~~~Gv~i~~~~----------------------------~-~~~lrl~p~~~ 361 (382)
T PLN00144 318 -GVGLLVGIQL-D-----VPAGPLVDACRDSGLLVLTAG----------------------------K-GDVVRLVPPLV 361 (382)
T ss_pred -cCceEEEEEe-c-----CccHHHHHHHHHCCeEEeecC----------------------------C-CCEEEEeCCCc
Confidence 2456666666 3 224567777788999987541 0 12899999997
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q 037063 550 TNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 550 ~t~eDv~~li~~l~~~l~~ 568 (588)
.+.+|++.+++.|.+.|.+
T Consensus 362 ~~~~~i~~~~~~l~~~l~~ 380 (382)
T PLN00144 362 ISEAELEQAVEILADCLPA 380 (382)
T ss_pred cCHHHHHHHHHHHHHHHHh
Confidence 8899999999999988753
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.3e-11 Score=122.99 Aligned_cols=305 Identities=14% Similarity=0.121 Sum_probs=202.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
.+...++.+.+|+|+|.+ +.++|..|-.. ....+-++ +.+|.-|+++.-.|+.++ .-|+.-|+.++....+
T Consensus 181 ~~~hkelE~l~A~f~g~e---~a~vF~mGf~T-Ns~~~p~l-~~~gsLIiSDelNHaSi~----~GaRLSgAtiRVfkHN 251 (519)
T KOG1357|consen 181 TEEHKELEELVARFLGVE---DAIVFSMGFAT-NSMNIPSL-LGKGSLIISDELNHASLI----TGARLSGATTRVFRHN 251 (519)
T ss_pred HHHHHHHHHHHHHhcCCc---ceEEEeccccc-cccCccee-ecCCcceeeccccchhee----ccccccCceEEEEecC
Confidence 677889999999999995 35999988422 23344455 778887888776665343 3356679999988775
Q ss_pred CCCCccCHHHHHHHHhhh----ccc-cCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC------
Q 037063 258 WPNLRIHSGKLMKKIVGK----RKK-KKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK------ 325 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~----~~~-~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~------ 325 (588)
|+++|++.|++. ..+ .+.-+.-+|++....++-|.+..+.++ ++.|++.+++++|+|++++.
T Consensus 252 ------dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGr 325 (519)
T KOG1357|consen 252 ------DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGR 325 (519)
T ss_pred ------CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCc
Confidence 667888887631 111 112345688888899999999999999 99999999999999987751
Q ss_pred C-CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 326 D-MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 326 d-~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
- +.-++.+...+|++.+.|-|.||. +.|++..++++++.++..... +. ++..-.
T Consensus 326 gvce~~g~d~~dvDImMGtftKSfga---~GGyiagsk~lid~lrt~s~~----~~------------------yat~~s 380 (519)
T KOG1357|consen 326 GVCEYFGVDPEDVDIMMGTFTKSFGA---AGGYIAGSKELIDYLRTPSPS----AL------------------YATSLS 380 (519)
T ss_pred ceeeccCCCchhheeecceehhhccc---ccceecCcHHHHhhhccCCCc----ee------------------ecccCC
Confidence 1 122344444589999999999993 458888899988876544321 00 000001
Q ss_pred CCccchhhHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEe
Q 037063 405 SSISGVSSKLVECKGLDHADAL----GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNV 480 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~~l~~~----G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~ 480 (588)
+++. .....+++.+.-. +.++..+++.....+++..|+++ ++.+||..+ ++++.+.+
T Consensus 381 ppva-----qq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~----------gfivyG~~d----SpVvplll 441 (519)
T KOG1357|consen 381 PPVA-----QQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM----------GFIVYGNND----SPVVPLLL 441 (519)
T ss_pred hHHH-----HHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC----------cEEEecCCC----CCcceeee
Confidence 1111 2223455554321 14667788888889999988874 688999754 56666555
Q ss_pred ecCCCCCcCHHHHHHHHHhCCcEe-ccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHH
Q 037063 481 FDWNGTRIDPALVQKLADRHNISL-SCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLW 559 (588)
Q Consensus 481 ~~~~g~~i~~~~v~~~l~~~gI~v-~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li 559 (588)
.... .+ ..+.+.+.+.+|.+ ..|..|.| +..+ .+|+.....++.||+|+++
T Consensus 442 ~~~~--k~--~~f~r~~l~~nigvVvvgfPatp-------------l~e~-----------r~R~c~Sa~ht~e~ld~~l 493 (519)
T KOG1357|consen 442 YGPA--KI--VAFSREMLERNIGVVVVGFPATP-------------LLES-----------RARFCLSASHTKEDLDRAL 493 (519)
T ss_pred cCcc--cc--cHHHHHHHhcCceEEEEeCCCch-------------HHHh-----------HHHhhhcccccHHHHHHHH
Confidence 4321 11 23445555566654 44555421 2221 6888888889999999999
Q ss_pred HHHHHhhhhh
Q 037063 560 AFVSRFLDAD 569 (588)
Q Consensus 560 ~~l~~~l~~~ 569 (588)
+.+.+.=+.+
T Consensus 494 ~~i~~~g~~~ 503 (519)
T KOG1357|consen 494 EVIDRVGDED 503 (519)
T ss_pred HHHhhhchhh
Confidence 9988754444
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-09 Score=117.84 Aligned_cols=345 Identities=9% Similarity=0.055 Sum_probs=196.9
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|.++..|||..+. |--.+.+.+++.+.+....... +. . ...+..
T Consensus 50 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~-----------------------~~--~-----~~~~~~ 99 (441)
T PRK05769 50 DVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYS-----------------------LT--D-----FYYEPA 99 (441)
T ss_pred eCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCcc-----------------------Cc--c-----cCCHHH
Confidence 3468889998655 4445677887766653211100 00 0 012344
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHH-----hc-----CC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSK-----KR-----GA 249 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~-----~~-----G~ 249 (588)
.++-++|.+.+... .-..|.|+.++|+|+..+++.-....|. +|+ ....||......+ .+.. +. -.
T Consensus 100 ~~lAe~L~~~~p~~-~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~l-s~t~~~~~~~~~~~~~~~ 177 (441)
T PRK05769 100 VELAERLVEIAPGG-FEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSL-SLTASKPVQRKGFFPLMP 177 (441)
T ss_pred HHHHHHHHHhCCCC-CCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHH-HhcCCCcccccCCCCCCC
Confidence 57777777776421 1135999999999988776633222344 465 4556665333222 1110 00 01
Q ss_pred EEEEEeccCCCCcc-------------CHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHc
Q 037063 250 RVSSAEFAWPNLRI-------------HSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEK 311 (588)
Q Consensus 250 ~v~~v~~~~~~~~i-------------~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~ 311 (588)
.+..++.. ...+. ..+.+++.+.+ .....++...|++.-+....|.+.| +++| ++|+++
T Consensus 178 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~~~~--~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~ 254 (441)
T PRK05769 178 GVIHVPYP-NPYRNPWGIENPEECGNAVLDFIEDYLFK--KLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKY 254 (441)
T ss_pred CeEEeCCC-ccccccccCCchHHHHHHHHHHHHHHHHh--hccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHc
Confidence 23344432 10000 12334442320 0012356889999999899999999 8899 999999
Q ss_pred CcEEEEeCCCc-CCC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCC
Q 037063 312 GWHVLLDATAL-GSK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSF 385 (588)
Q Consensus 312 g~~vvvDaa~~-~~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~ 385 (588)
|+++++|.++. ++. ....++ ..||++++ .|.+|. ...+|++++++++++.+. ...+ ++
T Consensus 255 g~lli~DEv~tG~gr~G~~~a~~~~g---v~pDivt~--~K~l~~-G~p~gav~~~~~i~~~~~-~~~~--~T------- 318 (441)
T PRK05769 255 GILLIDDEVQTGMGRTGKMFAIEHFG---VEPDIITL--AKAIAG-GLPLGAVIGRAELMFLPP-GSHA--NT------- 318 (441)
T ss_pred CCEEEEechhhCCCcccceehhhccC---CCCCEEEE--cccccC-CcccEEEEEehhhhhcCC-CCCC--CC-------
Confidence 99999999966 221 112223 24898764 596663 344899999988764221 1111 00
Q ss_pred CcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEe
Q 037063 386 SEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIY 464 (588)
Q Consensus 386 ~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~ 464 (588)
| .| +..+ .++..++|+.+++ .+.++++.+.++|++.|.++... .+.+ .+
T Consensus 319 -------------~--~g--~p~~---~aaa~a~L~~l~~----~~~~~~~~~g~~l~~~L~~l~~~-----~~~~~~v- 368 (441)
T PRK05769 319 -------------F--GG--NPVA---AAAALATLEELEE----GLLENAQKLGEYLRKELKELKEK-----YEFIGDV- 368 (441)
T ss_pred -------------C--Cc--CHHH---HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh-----CCCeeee-
Confidence 1 11 1111 2344466666654 56778888888888888776311 1211 11
Q ss_pred CCCCCCCcccEEEEEeecCCCCCc--CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEE
Q 037063 465 GPKVMFDRGPSLAFNVFDWNGTRI--DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVV 542 (588)
Q Consensus 465 ~p~~~~~rg~iv~f~~~~~~g~~i--~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~v 542 (588)
..+|.++.+.+.+...+.. ....+.+.+.++||.+... |...+
T Consensus 369 -----rg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~------------------------------~~~~l 413 (441)
T PRK05769 369 -----RGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGA------------------------------GKSAI 413 (441)
T ss_pred -----ecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcEEecC------------------------------CCCEE
Confidence 1346677776643211100 1233555666789987431 12389
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 543 TAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 543 RvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
|+++.+..|.+||+++++.+.+.+++
T Consensus 414 r~~p~l~~t~~~id~~~~~l~~~l~~ 439 (441)
T PRK05769 414 RIIPPLIITEEEADIGLEILEEAIKE 439 (441)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-10 Score=121.05 Aligned_cols=336 Identities=11% Similarity=0.044 Sum_probs=191.0
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
.++..|||..+. |--.+.+.+++.+.+..-.... +. . ..+...
T Consensus 37 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~-----------------------~~---~-----~~~~~~ 85 (408)
T PRK04612 37 DQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTS-----------------------NV---F-----YSAPPL 85 (408)
T ss_pred CCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccc-----------------------cc---c-----CCHHHH
Confidence 368899997644 6667788888876654211100 00 0 023334
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C----C--CCC-eEE-EcCCCchhHHHHHHHHHH----hcCC
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F----Y--SNP-RLL-TVYDHENEAAALMIESSK----KRGA 249 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~----~--~gd-~ll-~~~e~~s~~~~~~~~~a~----~~G~ 249 (588)
++-+++.++... ...|.|+.++++|+..+++... + . ++. +|+ ....||......+ .... +.+.
T Consensus 86 ~la~~L~~~~~~---~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~-s~~~~~~~~~~~ 161 (408)
T PRK04612 86 KLAEELVTASRF---AEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAV-TATAQPKYQEGY 161 (408)
T ss_pred HHHHHHHhhCCC---CCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHH-HhcCCcccccCC
Confidence 566666665532 1359999999998887665321 1 1 223 355 4556776333221 1110 0111
Q ss_pred -----EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC-----HHHH-HHHHHcCcEEEEe
Q 037063 250 -----RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS-----YMWM-SVAAEKGWHVLLD 318 (588)
Q Consensus 250 -----~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p-----l~~I-~~a~~~g~~vvvD 318 (588)
.+..++. -+.+.+++.+.. .+..+|++.-. +.+|-.++ +++| ++|+++|+++|+|
T Consensus 162 ~~~~~~~~~~~~------~d~~~l~~~~~~-------~~~aavi~eP~-~~~gg~~~~~~~~l~~l~~l~~~~g~llI~D 227 (408)
T PRK04612 162 EPLPGGFRYVDF------NDVEALEAAMAG-------GDVAAVMLEPI-QGEGGVMPAAPGFLARVRALCDQHDALLVLD 227 (408)
T ss_pred CCCCCCceEcCC------CCHHHHHHhhCC-------CCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 1122222 167888887751 34555555444 34554444 5567 8999999999999
Q ss_pred CCCcC-CCCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccccc
Q 037063 319 ATALG-SKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDES 397 (588)
Q Consensus 319 aa~~~-~~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~ 397 (588)
.++.. +..-..+......+...+.++.|.+|. ...+|++++++++.+.+.....+ .
T Consensus 228 Ev~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~-G~piga~~~~~~~~~~~~~~~~~--~-------------------- 284 (408)
T PRK04612 228 EIQCGMGRTGTLFAHWQEQVTPDIVTLAKALGG-GFPIGAMLAGPKVAETMQFGAHG--T-------------------- 284 (408)
T ss_pred ccccCCCcCCchhhhhhcCCCCCEEEEcchhcC-CCceEEEEECHHHHhhhcCCCcC--C--------------------
Confidence 99653 211110110111233345577897763 24489999888776655432211 0
Q ss_pred ccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE
Q 037063 398 SQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA 477 (588)
Q Consensus 398 ~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~ 477 (588)
-| .| +... .++..++|+.+.+ +.+.++++.+.+++.++|.++... .+.+ +. ...+|.++.
T Consensus 285 t~--~~--~p~~---~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~l~~l~~~-----~~~i---~~--vrg~Gl~~~ 344 (408)
T PRK04612 285 TF--GG--NPLA---AAVARVALRKLAS---PQIAANVARQSAALRAGLEALNAE-----FGVF---AQ--VRGRGLMLG 344 (408)
T ss_pred CC--CC--CHHH---HHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhh-----CCCe---ee--eeccceEEE
Confidence 01 11 1111 2444566776655 567888888889998888876311 1111 11 013466777
Q ss_pred EEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHH
Q 037063 478 FNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYR 557 (588)
Q Consensus 478 f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~ 557 (588)
+.+..... -....+.+.+.++||.+... |...||+.+++..+.+||++
T Consensus 345 i~~~~~~~--~~a~~i~~~l~~~Gvlv~~~------------------------------g~~~lRl~Ppl~it~eeid~ 392 (408)
T PRK04612 345 AVLAPAHA--GQAGAILDLAAEHGLLLLQA------------------------------GPDVLRFVPALNLTDAELAD 392 (408)
T ss_pred EEecCchh--hHHHHHHHHHHHCCeEEeeC------------------------------CCCEEEEcCCccCCHHHHHH
Confidence 77643110 11345677788899987531 12389999999999999999
Q ss_pred HHHHHHHhhhh
Q 037063 558 LWAFVSRFLDA 568 (588)
Q Consensus 558 li~~l~~~l~~ 568 (588)
+++.+.+.|.+
T Consensus 393 ~l~~l~~~l~~ 403 (408)
T PRK04612 393 GLARLRLALAD 403 (408)
T ss_pred HHHHHHHHHHH
Confidence 99999998864
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.9e-10 Score=111.33 Aligned_cols=352 Identities=14% Similarity=0.110 Sum_probs=217.4
Q ss_pred CCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCch--hHHHHHHHHHHHHHhCCC
Q 037063 118 IGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEE--SELESKIRKRIMDFMNIS 195 (588)
Q Consensus 118 a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~--~~~~~~~r~~ia~~lga~ 195 (588)
++-...+.+|++++-.-+... | | .+.+. ..+||+.+ .+++.-++++..+.|+++
T Consensus 47 aSENFts~aVmeAlGS~ltNK-Y----S------------------EGyPG-~RYYGGne~ID~iE~LCq~RALeaF~ld 102 (477)
T KOG2467|consen 47 ASENFTSRAVMEALGSCLTNK-Y----S------------------EGYPG-ARYYGGNEYIDQIELLCQKRALEAFGLD 102 (477)
T ss_pred ecccchHHHHHHHHhHHhhcc-c----c------------------cCCCc-ccccCcchHHHHHHHHHHHHHHHHhCCC
Confidence 556677899999975444321 1 1 12223 33566654 566667788999999999
Q ss_pred CCCceEEEe-cCHHHHHHHHHHhCCCCCCCeEE---EcCCCchhHHHHHHHHHHhcCCEEE-------EEeccCCCCccC
Q 037063 196 EDDYTLVFT-ANQSSAFKLLAESYPFYSNPRLL---TVYDHENEAAALMIESSKKRGARVS-------SAEFAWPNLRIH 264 (588)
Q Consensus 196 ~~e~~vvft-~g~T~al~lv~~s~~~~~gd~ll---~~~e~~s~~~~~~~~~a~~~G~~v~-------~v~~~~~~~~i~ 264 (588)
|+..-|=.. -+++-|.-.+-.++ ++|+++|. .+...|- ++-.+. ..+.+... ...++..+|.||
T Consensus 103 p~kWGVNVQp~SGSPANfavYtal-l~Ph~RiMGLDLP~GGHL-sHGy~T---~~kkISa~SiyFeSmPYkv~~~TG~ID 177 (477)
T KOG2467|consen 103 PEKWGVNVQPYSGSPANFAVYTAL-LKPHERIMGLDLPSGGHL-SHGYQT---PTKKISATSIYFESMPYKVDPSTGYID 177 (477)
T ss_pred HHHCceeeccCCCCchhhHHHhhh-cCCCCeeeeccCCCCCcc-cccccc---CCceeeeeeeecccCceeeCCCCCcee
Confidence 876545444 36677777777788 89999975 2222221 121111 11111111 123455678999
Q ss_pred HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-----CCCCCCCCCCCCCc
Q 037063 265 SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS-----KDMDTLGLSLFKPD 338 (588)
Q Consensus 265 ~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~-----~d~~~l~l~~~~~D 338 (588)
-|.|++.... -++++++.-.. ..-..+|+..+ ++|.+.|++++.|-||..+ .-.+++. .+|
T Consensus 178 YD~Le~~A~~-------frPk~iiaG~S--aY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFe----y~D 244 (477)
T KOG2467|consen 178 YDKLEKTATL-------FRPKLIIAGTS--AYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFE----YCD 244 (477)
T ss_pred hHHHHHHHHh-------cCCcEEEeccc--cchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCccc----ccc
Confidence 9999987652 46777765432 35577899999 9999999999999986554 2235555 389
Q ss_pred EEEeccCc-cCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccc-cccc-cCCCCCccchhhHHH
Q 037063 339 FLICSFYK-IFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDE-SSQS-KFPESSISGVSSKLV 415 (588)
Q Consensus 339 ~vv~S~~K-~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~-~~f~-e~GT~~~~~~~~~~a 415 (588)
++.++.|| +-| |.| |.++.|+..-. ..+.. |. .... +++.+-. ..|- -.|-|.-..| ++
T Consensus 245 iVTTTTHKsLRG--PRg-~mIFyRkGvk~-~~~k~-g~-~i~y---------dlE~kINfaVFP~lQGGPHNhtI---aa 306 (477)
T KOG2467|consen 245 IVTTTTHKSLRG--PRG-AMIFYRKGVKS-IKPKQ-GK-EILY---------DLEDKINFAVFPGLQGGPHNHTI---AA 306 (477)
T ss_pred eeeccccccccC--Ccc-eeEEEeccCCc-CCCCC-CC-ccee---------chhhhhhhhccccccCCCCcchH---HH
Confidence 99999999 557 765 88888886532 22111 10 1110 1111100 0221 2344444444 78
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHH
Q 037063 416 ECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQK 495 (588)
Q Consensus 416 l~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~ 495 (588)
+..||++...-.....++++...+++|.+.|.++ +.+++... ....+|.+.+.. .| ++...+++
T Consensus 307 lAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~----------Gy~lvtgG---TDnHlvLvDLr~-~G--~dGarvE~ 370 (477)
T KOG2467|consen 307 LAVALKQAMTPEFKEYQKQVLKNAKALASALISR----------GYKLVTGG---TDNHLVLVDLRP-KG--VDGARVEK 370 (477)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc----------CceEecCC---ccceEEEEeccc-cC--CchHHHHH
Confidence 8899998877667888889999999999999985 45555432 223566666654 22 78899999
Q ss_pred HHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCC----HHHHHHHHHHHHHhh
Q 037063 496 LADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTN----FEDTYRLWAFVSRFL 566 (588)
Q Consensus 496 ~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t----~eDv~~li~~l~~~l 566 (588)
.++.-+|.+--- .| ..+++ ....+.||+..-.+|+ ++|.+++.++|.+.+
T Consensus 371 vle~~~I~~NKN-tv---pGD~S-----------------al~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av 424 (477)
T KOG2467|consen 371 VLELCHIALNKN-TV---PGDKS-----------------ALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAV 424 (477)
T ss_pred HHHHhhhhhcCC-cC---CCCcc-----------------ccCCCceeccchhhcccCccHHHHHHHHHHHHHHH
Confidence 999988864211 00 01110 0111278887766654 689999988887754
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-09 Score=115.41 Aligned_cols=315 Identities=9% Similarity=0.059 Sum_probs=187.8
Q ss_pred CCCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
.++..|||..+ .|.-.+.+++++.+.+..-....+ . + ..+...
T Consensus 21 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~--------------------------~--~---~~~~~~ 69 (364)
T PRK04013 21 SQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGP--------------------------M--F---EHEEKE 69 (364)
T ss_pred CCCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCccC--------------------------C--c---CCHHHH
Confidence 36788999754 456667888888766643111100 0 0 134456
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCC-CeEE-EcCCCchhHHHHHHHHH----HhcCC-----EE
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSN-PRLL-TVYDHENEAAALMIESS----KKRGA-----RV 251 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~g-d~ll-~~~e~~s~~~~~~~~~a----~~~G~-----~v 251 (588)
++.++++++++.+ .++|++++|+|+.++++......| ++|+ ....||......+ ... .+.+. .+
T Consensus 70 ~la~~l~~~~~~~----~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~l-s~~~~~~~~~~~~p~~~~~ 144 (364)
T PRK04013 70 EMLEELSKWVNYE----YVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGAL-SATWKPKYREDFEPLVPGF 144 (364)
T ss_pred HHHHHHHhhcCCC----EEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhc-cCCCCcccccCCCCCCCCc
Confidence 7788888887652 499999999999988776544455 5655 5666776332221 110 00111 12
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCcCCCC
Q 037063 252 SSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATALGSKD 326 (588)
Q Consensus 252 ~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~~~~d 326 (588)
..+|.+ |.+++++.+. ++++.|++..+...-|...| ++.| ++|+++|+++|+|.++..- .
T Consensus 145 ~~~~~~------d~~~l~~~i~--------~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-R 209 (364)
T PRK04013 145 KHIPFN------DVEAAKEAIT--------KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-R 209 (364)
T ss_pred EEecCC------CHHHHHHHhc--------CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-C
Confidence 233321 5678888886 67889999988877777664 7788 9999999999999996631 1
Q ss_pred CCC---CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCC
Q 037063 327 MDT---LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP 403 (588)
Q Consensus 327 ~~~---l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G 403 (588)
... ...-...||++++ -|-+|. ..-+|+++.+++.. +...+ ++ ..|
T Consensus 210 tG~~~a~~~~gv~PDiv~~--gK~lgg-G~P~~a~~~~~~~~----~~~~~--~T----------------------~~g 258 (364)
T PRK04013 210 TGKFLAIEHYKVEPDIVTM--GKGIGN-GVPVSLTLTNFDVE----RGKHG--ST----------------------FGG 258 (364)
T ss_pred CCchhHHHhcCCCCCEEEe--cccccC-CceeEEEEeccccc----CCCcC--CC----------------------CCc
Confidence 111 1111244897776 786652 12367777776641 11111 00 011
Q ss_pred CCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecC
Q 037063 404 ESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDW 483 (588)
Q Consensus 404 T~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~ 483 (588)
|..+ .++..+.|+.+++. .+.+|.+++ |.++.+ +.+ +. -.-+|-++.+.+.+
T Consensus 259 --np~~---~aaa~a~l~~i~~~---~l~~~~~~~-------l~~l~~-------~~v---~~--vRG~Gl~~gve~~~- 310 (364)
T PRK04013 259 --NPLA---CKAVAVTLRILRRE---RLVEKAGEK-------FIEIKG-------ERV---VT--TRGRGLMIGIVLKK- 310 (364)
T ss_pred --CHHH---HHHHHHHHHHHHhc---cHHHHHHHH-------HHHhcc-------Ccc---ee--eeeCcEEEEEEeCC-
Confidence 1111 24444666666653 344444443 223211 111 11 01346677777743
Q ss_pred CCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 484 NGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 484 ~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
....+.+.+.++|+.++.. |..+||+.+.+.-|++|++.+++.|.
T Consensus 311 -----~~~~i~~~~~~~Gll~~~~------------------------------g~~vlr~~Ppl~it~~~i~~~~~~l~ 355 (364)
T PRK04013 311 -----PVGKYVEELQNRGYLVHTA------------------------------GQRVIRLLPPLIISKDTMEEAKSAIE 355 (364)
T ss_pred -----cHHHHHHHHHhCCcEEeeC------------------------------CCCEEEEeCCcccCHHHHHHHHHHHH
Confidence 1345667777789987531 11289999999999999999999999
Q ss_pred Hhhhh
Q 037063 564 RFLDA 568 (588)
Q Consensus 564 ~~l~~ 568 (588)
+.+++
T Consensus 356 ~~l~~ 360 (364)
T PRK04013 356 GVIND 360 (364)
T ss_pred HHHHH
Confidence 98865
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-09 Score=114.14 Aligned_cols=348 Identities=12% Similarity=0.041 Sum_probs=198.7
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+.-|||..+. |--.+.+.+++.+.+........ . ....+...
T Consensus 30 ~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~------------------------~------~~~~~~~~ 79 (420)
T TIGR00700 30 VDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCF------------------------M------VTPYEGYV 79 (420)
T ss_pred CCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccc------------------------c------ccCChHHH
Confidence 367889997554 66677888888766643111000 0 00023334
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHH-----hcCC-----E
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSK-----KRGA-----R 250 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~-----~~G~-----~ 250 (588)
++-+++++++... ..+.|.|+.++|+|+..+++.-..-.|. +|+ ....||......+ .+.. ..+. .
T Consensus 80 ~la~~l~~~~p~~-~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~-~~~~~~~~~~~~~~~~~~~ 157 (420)
T TIGR00700 80 ALAEKLNRIAPGS-GPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTM-ALTAKVMPYKSGFGPFAPE 157 (420)
T ss_pred HHHHHHHHhCCCC-CCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHH-HhcCCCcccccCCCCCCCC
Confidence 6666777776421 1135999999999887666532222344 355 5556776333332 2110 1111 2
Q ss_pred EEEEeccCCCC------cc----CHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEE
Q 037063 251 VSSAEFAWPNL------RI----HSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHV 315 (588)
Q Consensus 251 v~~v~~~~~~~------~i----~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~v 315 (588)
+..++...... .. +.+.+++.+.. ....++...|++.-+...+|...| +++| ++|+++|+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gill 234 (420)
T TIGR00700 158 VYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVI---DVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVF 234 (420)
T ss_pred cEEeCCCccccccccccchhHHHHHHHHHHHHHh---hcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 33343320000 01 13456655530 112357888999888888999988 7778 9999999999
Q ss_pred EEeCCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccc
Q 037063 316 LLDATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEII 389 (588)
Q Consensus 316 vvDaa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~ 389 (588)
|+|.++.. +. .....+ ..+|+++ +.|.++. ...+|++++++++++.+.+...+ +
T Consensus 235 I~DEV~tg~gr~g~~~a~~~~~---~~pDi~~--lsK~l~~-G~pig~v~~~~~i~~~~~~~~~~--~------------ 294 (420)
T TIGR00700 235 IADEVQTGFARTGAMFACEHEG---PEPDLIT--TAKSLAD-GLPLSGVTGRAEIMDAPAPGGLG--G------------ 294 (420)
T ss_pred EEEecccCCcccchhHHHhhcC---CCCCEEE--eeccccC-CcceEEEEecHHHHhhcCCCCcC--C------------
Confidence 99998543 21 012222 2488654 8997662 35689999999887766432211 0
Q ss_pred ccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCC
Q 037063 390 ELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVM 469 (588)
Q Consensus 390 ~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~ 469 (588)
|.....+ ..++..++|+.+.+ +.+.++.+.+.+++.+.|.++.-. .+.+.-+.
T Consensus 295 --------------T~~~~pl-~~aaa~a~l~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~-----~~~~~~vr---- 347 (420)
T TIGR00700 295 --------------TYAGNPL-ACAAALAVLAIIES---EGLIERARQIGRLVTDRLTTLKAV-----DPRIGDVR---- 347 (420)
T ss_pred --------------CCCcCHH-HHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhh-----CCCEEEee----
Confidence 1111111 12344466776655 456677777777787777765211 12222111
Q ss_pred CCcccEEEEEeecCC-CCC--cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec
Q 037063 470 FDRGPSLAFNVFDWN-GTR--IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL 546 (588)
Q Consensus 470 ~~rg~iv~f~~~~~~-g~~--i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl 546 (588)
..|.++.+.+.+.+ +.. .....+.+.+.++||.+.++.. .+ .+||+++
T Consensus 348 -g~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~---------------------------f~-~~lRl~p 398 (420)
T TIGR00700 348 -GLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGM---------------------------FG-NIIRFLP 398 (420)
T ss_pred -ccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCC---------------------------CC-CEEEEEC
Confidence 24667777664321 110 0123344555689999876411 11 2899999
Q ss_pred CCCCCHHHHHHHHHHHHHhhh
Q 037063 547 GCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 547 g~~~t~eDv~~li~~l~~~l~ 567 (588)
....+.+|++++++.|.++|.
T Consensus 399 ~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 399 PLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred CCCcCHHHHHHHHHHHHHHhh
Confidence 887889999999999998874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-09 Score=115.93 Aligned_cols=352 Identities=11% Similarity=0.018 Sum_probs=197.8
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|..+..|||..+. |--.+.+.+++.+.+..-.+..+ .. ...+..
T Consensus 36 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~---------------------~~---------~~~~~~ 85 (425)
T PRK07495 36 DKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCH---------------------QV---------VPYENY 85 (425)
T ss_pred eCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCccc---------------------Cc---------cCCHHH
Confidence 3368889997554 66778888888766643111000 00 012344
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHH-----HhcC-----C
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESS-----KKRG-----A 249 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a-----~~~G-----~ 249 (588)
.++-+++.+++.-.. ...|.|++++|+|+..+++.-..-.|. +|+ ....||......+ .+. .+.+ .
T Consensus 86 ~~la~~l~~~~p~~~-~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~-~~~~~~~~~~~~~~~~~~ 163 (425)
T PRK07495 86 VRLAERLNALVPGDF-AKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGM-SLTGKVVPYKVGFGAMMP 163 (425)
T ss_pred HHHHHHHHHhCCCCC-CCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHh-hhcCCCcccccCCCCCCC
Confidence 566777777764221 125999999999888766532111333 465 4556665333222 110 0111 1
Q ss_pred EEEEEeccCCCCccC----HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccC-C---HHHH-HHHHHcCcEEEEeCC
Q 037063 250 RVSSAEFAWPNLRIH----SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARY-S---YMWM-SVAAEKGWHVLLDAT 320 (588)
Q Consensus 250 ~v~~v~~~~~~~~i~----~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~-p---l~~I-~~a~~~g~~vvvDaa 320 (588)
.+..+|++.....++ .+++++.+.+ ....++...|++.-+...+|.+. | +++| ++|+++|+++|+|.+
T Consensus 164 ~~~~~~~~~~~~g~~~~~~~~~l~~~~~~---~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv 240 (425)
T PRK07495 164 DVYHVPFPVELHGVSVEQSLAALDKLFKA---DVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEV 240 (425)
T ss_pred CeEEecCCcccccccHHHHHHHHHHHHHh---ccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEech
Confidence 344555531111122 3344665541 11124566666666655588664 4 4456 899999999999998
Q ss_pred CcC-CCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccccc
Q 037063 321 ALG-SKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDES 397 (588)
Q Consensus 321 ~~~-~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~ 397 (588)
+.. +.. +-........||+ .++.|.+|. ..-+|++++++++++.+.+...+ .+
T Consensus 241 ~tG~gr~G~~~a~~~~gv~pDi--~tlsK~l~~-G~pigav~~~~~i~~~~~~~~~~--~T------------------- 296 (425)
T PRK07495 241 QTGFARTGKLFAMEHHEVAADL--TTMAKGLAG-GFPLAAVTGRAEIMDAPGPGGLG--GT------------------- 296 (425)
T ss_pred hhcCCcCCCceeecccCCCCCE--EeehhhhcC-CccceEEEEcHHHHhccCCCCcC--CC-------------------
Confidence 652 211 1011111223675 667896652 23489999998887766432211 00
Q ss_pred ccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCCCCcccEE
Q 037063 398 SQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVMFDRGPSL 476 (588)
Q Consensus 398 ~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~~~rg~iv 476 (588)
| + .+... .++..++|+++++ +.+.++++.+.++|.++|+++... .|.+ .+- .+|-++
T Consensus 297 -~---~-~~pl~---~aaa~a~l~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~-----~~~i~~vr------G~Gl~~ 354 (425)
T PRK07495 297 -Y---G-GNPLG---IAAAHAVLDVIEE---EDLCERANQLGNRLKQRLASLRET-----VPEIADIR------GPGFMN 354 (425)
T ss_pred -C---C-CCHHH---HHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHhh-----CCCeeeee------cCceEE
Confidence 0 0 11111 2444577777765 467788888888888888876311 1221 222 235666
Q ss_pred EEEeecCCCCCcC---HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHH
Q 037063 477 AFNVFDWNGTRID---PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFE 553 (588)
Q Consensus 477 ~f~~~~~~g~~i~---~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~e 553 (588)
.+.+.+.+...-+ ...+.+.+.++|+.++.. . .+..+||+.+-+..|.+
T Consensus 355 ~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---g-------------------------~~~~~~r~~Ppl~it~~ 406 (425)
T PRK07495 355 AVEFNDADSGLPSAEFANRVRLKALEKGLILLTC---G-------------------------VHGNVIRFLAPITIQDD 406 (425)
T ss_pred EEEEecCCCCCccHHHHHHHHHHHHHCCeEEeec---C-------------------------CCCCEEEEeCCCccCHH
Confidence 6666432210001 234666667799988531 0 10128999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q 037063 554 DTYRLWAFVSRFLDA 568 (588)
Q Consensus 554 Dv~~li~~l~~~l~~ 568 (588)
||+.+++.|.+.|++
T Consensus 407 ~id~~~~~l~~~l~~ 421 (425)
T PRK07495 407 VFAEALDILEASILE 421 (425)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998864
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-09 Score=115.73 Aligned_cols=352 Identities=11% Similarity=0.097 Sum_probs=200.4
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+.-|||..+. |--.+.+.+++.+.+....+... . .. ..+...
T Consensus 46 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~-----------------------~--~~-----~~~~~~ 95 (445)
T PRK09221 46 ADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPA-----------------------F--QM-----GHPLAF 95 (445)
T ss_pred CCCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccc-----------------------c--cc-----CCHHHH
Confidence 367889998554 66778888888666532111100 0 00 123445
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-----CCCC-eEE-EcCCCchhHHHHHH-----HHHHhcC-
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-----YSNP-RLL-TVYDHENEAAALMI-----ESSKKRG- 248 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-----~~gd-~ll-~~~e~~s~~~~~~~-----~~a~~~G- 248 (588)
++-+++++++.... +.|.|+.++++|+..+++... + +++. +|+ ....||......+. ...+..+
T Consensus 96 ~la~~L~~~~p~~~--~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~ 173 (445)
T PRK09221 96 ELAERLAELAPGGL--DHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGG 173 (445)
T ss_pred HHHHHHHHhCCCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCC
Confidence 67777877764321 359999999998877665321 1 1223 455 55667653222110 0000001
Q ss_pred --CEEEEEeccC--CC--Cc--------cCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHH
Q 037063 249 --ARVSSAEFAW--PN--LR--------IHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAA 309 (588)
Q Consensus 249 --~~v~~v~~~~--~~--~~--------i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~ 309 (588)
..+..+|... .. .. -..+++++.+. ....++...|++.-+....|.+.| +++| ++|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~----~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~ 249 (445)
T PRK09221 174 LLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVA----LHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICD 249 (445)
T ss_pred CCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHH----hcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHH
Confidence 1133343320 00 00 01356777775 112256888999999999999999 8999 9999
Q ss_pred HcCcEEEEeCCCc-CCC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeec
Q 037063 310 EKGWHVLLDATAL-GSK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEP 383 (588)
Q Consensus 310 ~~g~~vvvDaa~~-~~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~ 383 (588)
++|+++|+|.++. ++. -...++ ..||++ .+-|.+|.+-.-+|++++++++++.+...... ...
T Consensus 250 ~~g~llI~DEV~tG~GRtG~~~~~~~~g---v~PDi~--~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~---~~~--- 318 (445)
T PRK09221 250 KHGILLIFDEVITGFGRLGAAFAAERFG---VTPDII--TFAKGLTNGAIPMGAVIASDEIYDAFMQGPEY---AIE--- 318 (445)
T ss_pred HcCCEEEEeehhhCCCcCchhhHHHhcC---CCCCEE--EeccccccCcccceeeEEcHHHHHhhccCccc---ccc---
Confidence 9999999999964 331 112233 238965 55685542101168888898887765421000 000
Q ss_pred CCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEE
Q 037063 384 SFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRI 463 (588)
Q Consensus 384 ~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i 463 (588)
+ + ..+|..-..+ .+++..+.|+.+.+ +.+.++.+.+.+++++.|.++. +.+.+.
T Consensus 319 -------~-------~-~~~T~~~~pl-~~aaa~a~L~~i~~---~~l~~~~~~~g~~l~~~l~~l~------~~~~v~- 372 (445)
T PRK09221 319 -------F-------F-HGYTYSAHPV-ACAAGLATLDIYRE---EDLFERAAELAPYFEDAVHSLK------GLPHVI- 372 (445)
T ss_pred -------c-------c-cccCCCcCHH-HHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhc------cCCCEE-
Confidence 0 0 0112221111 12344466776655 3567889999999999998862 012221
Q ss_pred eCCCCCCCcccEEEEEeecCCCC-CcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEE
Q 037063 464 YGPKVMFDRGPSLAFNVFDWNGT-RIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVV 542 (588)
Q Consensus 464 ~~p~~~~~rg~iv~f~~~~~~g~-~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~v 542 (588)
+ . ...|-+..+.+....+. ......+.+.+.++||.++.+ . ..|
T Consensus 373 --~-v-rg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-----------------------------~--~~l 417 (445)
T PRK09221 373 --D-I-RNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT-----------------------------G--DTI 417 (445)
T ss_pred --E-E-ecCceEEEEEEecccccccchHHHHHHHHHHCCeEEeec-----------------------------C--CEE
Confidence 1 0 12344555555432111 111345666677789988642 1 189
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 543 TAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 543 RvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
|+++.+..|++||+++++.|.+.|++
T Consensus 418 r~~Ppl~~t~~eid~~~~~l~~~l~~ 443 (445)
T PRK09221 418 ALSPPLIIEKAQIDELVDALGDALRA 443 (445)
T ss_pred EEECCccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998864
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-10 Score=121.29 Aligned_cols=304 Identities=16% Similarity=0.092 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
....++.+..|+.+|++ +....++|+|.|++.+..+. .++||.||++.+.|-+...++. ..|+..+++....
T Consensus 70 G~i~eAqe~aA~~fgAd---~tyFvvNGTS~ank~vi~a~-~~~GD~VLvdRN~HKSi~~gli----laGa~Pvyl~p~~ 141 (557)
T COG1982 70 GPIKEAQELAARVFGAD---HTYFVVNGTSTANKAVINAV-LTPGDKVLVDRNCHKSIHHGLI----LAGATPVYLEPSR 141 (557)
T ss_pred ccHHHHHHHHHHHhCCC---ceEEEECCccHHHHHHHHhh-cCCCCEEEecCCccHHHHHHHH----HcCCceEEecCCC
Confidence 45679999999999996 45888999999999999999 9999999999888875665532 3588888886542
Q ss_pred -C----CCccCHHHHHHHHhhhccccCCCcc-eEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCC
Q 037063 259 -P----NLRIHSGKLMKKIVGKRKKKKKKKR-GLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLG 331 (588)
Q Consensus 259 -~----~~~i~~e~l~~~i~~~~~~~~~~~t-~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~ 331 (588)
+ -+.|+.+.+++.+.+. +.. ++++++.+ +..|+.+++++| +.++..+++|.+|.++-+..+..++-
T Consensus 142 np~~gi~ggI~~~~~~~~l~~~------~~~~k~~vitnp-TYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l 214 (557)
T COG1982 142 NPLYGIIGGIPLETFKEALLAH------PDAEKLAVITNP-TYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPML 214 (557)
T ss_pred CccccccCCCCHHHHHHHHHhC------hhhheeEEEecC-ccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccC
Confidence 2 1468999999988731 233 77777765 559999999999 99999999999999966642222221
Q ss_pred --CC-CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 332 --LS-LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 332 --l~-~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
.. +.+.|+++-|.||.+|. -+=...|.++.. ..+....+. . .+ ..+ ..++|++.
T Consensus 215 ~~~~~~~~~~~~tqS~HK~l~a-lSQaS~iHv~~~--~~~~~~r~n--e------------a~-----~~h-~STSPsY~ 271 (557)
T COG1982 215 PESALNGGADFVTQSTHKLLAA-LSQASMIHVKDG--RAVNHERFN--E------------AL-----MMH-QSTSPSYP 271 (557)
T ss_pred cchhhhcCceEEEechhhhhhh-hhhhHHHhhCCC--ccCCHHHHH--H------------HH-----HHH-ccCCchHH
Confidence 11 25689999999998873 333455555542 011100000 0 00 011 22333333
Q ss_pred chhhHHHHHHHHHHHHHhCHHHH---HHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCC-CCc------------
Q 037063 409 GVSSKLVECKGLDHADALGLILI---SNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVM-FDR------------ 472 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i---~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~-~~r------------ 472 (588)
- ++++..|-.+....|...+ ......+++.+++....+ +++.+++|... ...
T Consensus 272 l---~ASlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~---------~~~~~~~~~~~~~~~~whgf~~~~~~~ 339 (557)
T COG1982 272 L---MASLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINEI---------GFFPVLQPEKLDPPTGWHGFEDYADDQ 339 (557)
T ss_pred H---HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc---------CCeeeccccccCCcccccccccccccc
Confidence 2 2444443334444443322 445556666777666664 46666666431 000
Q ss_pred ---cc-EEEEEeecCCCCCcCHHHHHHHHHhCCcEe-ccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecC
Q 037063 473 ---GP-SLAFNVFDWNGTRIDPALVQKLADRHNISL-SCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALG 547 (588)
Q Consensus 473 ---g~-iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v-~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg 547 (588)
-| =+++..+. ..++...|++.|+++||.. .++... -.+=++++
T Consensus 340 ~~lDP~Klti~tp~---~Gipg~~v~~~L~e~gii~e~~~d~~-----------------------------~lll~~~~ 387 (557)
T COG1982 340 YFLDPTKLTITTPE---FGIPGAIVAKYLREHGIIPEETGDYS-----------------------------NLLLFSPG 387 (557)
T ss_pred eeccccEEEEecCC---CCCcHHHHHHHHHHcCCeeeecCCce-----------------------------eeEEeeec
Confidence 01 12233322 2388999999999888864 222111 14455555
Q ss_pred CCCCHHHHHHHHHHHHH
Q 037063 548 CLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 548 ~~~t~eDv~~li~~l~~ 564 (588)
.-....+|++|+++.+.
T Consensus 388 ~gk~~~lv~~L~~f~r~ 404 (557)
T COG1982 388 IGKWQTLVDRLLEFKRR 404 (557)
T ss_pred cchHHHHHHHHHHHHHh
Confidence 45566778888887773
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-09 Score=111.62 Aligned_cols=376 Identities=16% Similarity=0.131 Sum_probs=227.7
Q ss_pred CCchhHHHHHhhhccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccc
Q 037063 91 LQTDQADRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSW 170 (588)
Q Consensus 91 ~~~~~~~~iR~~~f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~ 170 (588)
.+.+.++++|+- .+ ++.+|-.+.|.|.++..+-..+.+++ ..|| .||+ +|-. ....
T Consensus 58 sE~e~l~~l~~i----a~-kN~~~~sfiG~GyY~~~~P~vI~rni----le~p------------ewyT-aYTP--YQpE 113 (450)
T COG0403 58 SEYEALAELKEI----AS-KNKVFTSFIGAGYYDTYTPPVILRNI----LENP------------EWYT-AYTP--YQPE 113 (450)
T ss_pred CHHHHHHHHHHH----Hh-cCchhhhhccCcccCCcCcHHHHHHh----hcCc------------cccc-cCCC--Cchh
Confidence 444566777752 22 56688888888877654333332222 2333 1221 1100 0111
Q ss_pred cccCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCC--CCeEEEcCCCchhHHHHHHHHHHhcC
Q 037063 171 LQYGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYS--NPRLLTVYDHENEAAALMIESSKKRG 248 (588)
Q Consensus 171 ~~~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~--gd~ll~~~e~~s~~~~~~~~~a~~~G 248 (588)
...|. -+.+-+.+..|+++.|.+-.. --.--++|.+-..++.+..... .++++++...|...+.-++..++..|
T Consensus 114 ISQGr--LqaLfefQtlv~dLTGm~VAN--ASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g 189 (450)
T COG0403 114 ISQGR--LEALFEFQTLVADLTGLDVAN--ASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLG 189 (450)
T ss_pred hhhHH--HHHHHHHHHHHHHHhCCCccc--chhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCc
Confidence 11122 455668889999999987443 4455577777777777766555 34577666655557777788888889
Q ss_pred CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCC-ccCCHHHH-HHHHHcCcEEEEeCC--CcCC
Q 037063 249 ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTG-ARYSYMWM-SVAAEKGWHVLLDAT--ALGS 324 (588)
Q Consensus 249 ~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG-~~~pl~~I-~~a~~~g~~vvvDaa--~~~~ 324 (588)
.+++.++.+ +.+++++. + ...+..+++..++ ..| ...++..| +.+|++|++++|=+- ++.-
T Consensus 190 ~~i~~~~~~------d~~~l~~~-~-------~~~~~gv~vQyP~-~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~L 254 (450)
T COG0403 190 IEIEVVDAD------DLDDLESA-D-------DGDVFGVLVQYPN-TFGIVEEDLRALIEAAHSAGALVIVAADPLALGL 254 (450)
T ss_pred eEEEEeccc------hhhhhhhc-c-------ccCeEEEEEecCC-CCCccchhHHHHHHHHhhcCCEEEEEechhHhhc
Confidence 999988765 56777766 4 1467788887775 688 66679999 999999998887543 2221
Q ss_pred -CCCCCCCCCCCCCcEEEeccCcc---CCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcc-cccccccc-cc
Q 037063 325 -KDMDTLGLSLFKPDFLICSFYKI---FGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEI-IELETLDE-SS 398 (588)
Q Consensus 325 -~d~~~l~l~~~~~D~vv~S~~K~---~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~-~~~~~~~~-~~ 398 (588)
+....+| +|+++++.+.+ +|++.+.+|++.++++...+++-...| ........+.+ ..++.|.. -|
T Consensus 255 L~pPGe~G-----ADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG---~S~D~~G~~A~rLaLQTREQHIR 326 (450)
T COG0403 255 LKPPGEFG-----ADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVG---VSVDAAGKRAFRLALQTREQHIR 326 (450)
T ss_pred cCCccccC-----CceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceee---eeecCCCCchhhhhHHHHHHHHh
Confidence 1234555 99999999983 122233488999999987766655543 22111110000 01111111 02
Q ss_pred cccCCCCCccchhhHHHHHHHHH--HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE
Q 037063 399 QSKFPESSISGVSSKLVECKGLD--HADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL 476 (588)
Q Consensus 399 f~e~GT~~~~~~~~~~al~~aL~--~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv 476 (588)
- |-.|.|+.....+.++.+++- ++-.-|+.+|.+|+.+++.++.++|++. ..++++.... .=..+
T Consensus 327 R-eKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~--------~~g~~~~~~~----fFdt~ 393 (450)
T COG0403 327 R-EKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEI--------GAGVELVFDH----FFDTF 393 (450)
T ss_pred h-hccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhc--------CCceEecccc----ceeeE
Confidence 2 677899887654555544443 3334479999999999999999999964 1356665431 11223
Q ss_pred EEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHH
Q 037063 477 AFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTY 556 (588)
Q Consensus 477 ~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~ 556 (588)
.+.+.. -..+.+.+.....||-++.-. .. .+=+++.-.+|.+||+
T Consensus 394 ~v~~~~-----~~~~~l~~~~~~~G~~L~~~~----------------------------~~--~~~ia~tEt~t~~~i~ 438 (450)
T COG0403 394 TVRVPE-----EVAEALLAAAIAGGINLRRVD----------------------------AD--TVLIALTETTTKEDID 438 (450)
T ss_pred EEecch-----hHHHHHHHHHHhcCCceeeec----------------------------CC--ceEEEeecccCHHHHH
Confidence 333331 113334455555677765320 11 6778888899999999
Q ss_pred HHHHHHHHh
Q 037063 557 RLWAFVSRF 565 (588)
Q Consensus 557 ~li~~l~~~ 565 (588)
.|++.+...
T Consensus 439 ~l~~~~~~~ 447 (450)
T COG0403 439 ALVAAFGGV 447 (450)
T ss_pred HHHHHHhhh
Confidence 999997653
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.4e-09 Score=115.21 Aligned_cols=351 Identities=10% Similarity=0.041 Sum_probs=195.5
Q ss_pred CCCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+ .|--.+.+.+++.+.+.. . ...+ .. ....+...
T Consensus 53 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~-~-~~~~----------------------~~------~~~~~~~~ 102 (443)
T PRK06058 53 VDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVAR-F-THTC----------------------FM------VTPYEGYV 102 (443)
T ss_pred CCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHh-c-cCcc----------------------cc------ccCCHHHH
Confidence 36888999865 456677888887666632 1 1100 00 00124445
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEE-EcCCCchhHHHHHHHHHH-----hcC-----CE
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLL-TVYDHENEAAALMIESSK-----KRG-----AR 250 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll-~~~e~~s~~~~~~~~~a~-----~~G-----~~ 250 (588)
++-+++++.+..... ..+.|+.++++|+..+++... +...++|+ ....||...... ..+.. +.+ ..
T Consensus 103 ~la~~l~~~~p~~~~-~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a-l~~~~~~~~~~~~~~~~~~~ 180 (443)
T PRK06058 103 AVAEQLNRLTPGDHE-KRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLT-MALTAKSMPYKSGFGPFAPE 180 (443)
T ss_pred HHHHHHHHhCCCCCC-CEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHH-HhhcCCCcccccccCCCCCC
Confidence 677777777643211 259999999998887766211 22234565 455566533222 11110 111 11
Q ss_pred EEEEeccCCCCc-----cC-HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeC
Q 037063 251 VSSAEFAWPNLR-----IH-SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDA 319 (588)
Q Consensus 251 v~~v~~~~~~~~-----i~-~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDa 319 (588)
+..++...+... .+ .+.+++.+..-.+....+++..|++.-+....|.+.| ++.| ++|+++|+++|+|.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DE 260 (443)
T PRK06058 181 VYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADE 260 (443)
T ss_pred ceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 223332101000 00 0112121110000001256788888877777788776 6778 99999999999999
Q ss_pred CCcC-CCC-----CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccc
Q 037063 320 TALG-SKD-----MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELET 393 (588)
Q Consensus 320 a~~~-~~d-----~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~ 393 (588)
++.. +.. ...++ ..||+++++ |.+|. ..-+|++++++++++.+.+...+ ++
T Consensus 261 V~tGfgRtG~~fa~~~~g---v~PDiv~~g--K~l~~-G~Pi~av~~~~~i~~~~~~~~~~--~T--------------- 317 (443)
T PRK06058 261 VQTGFARTGAWFACEHEG---IVPDLITTA--KGIAG-GLPLSAVTGRAEIMDAPHPGGLG--GT--------------- 317 (443)
T ss_pred cccCCCcChhhhHHHhcC---CCCCEEEEc--ccccC-CCccEEEEEcHHHHhhccCCCCC--CC---------------
Confidence 9653 210 12223 348998875 96662 23389999999887766533221 10
Q ss_pred ccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCCCCc
Q 037063 394 LDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVMFDR 472 (588)
Q Consensus 394 ~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~~~r 472 (588)
| . .|..+ .++..++|+.+.+ +++.++.+.+.++|.++|+++... .+.+ .+- .+
T Consensus 318 -----~--~--gnpl~---~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l~~~-----~~~i~~vr------g~ 371 (443)
T PRK06058 318 -----Y--G--GNPVA---CAAALAAIETIEE---DDLVARARQIEALMTDRLRALAAE-----DDRIGDVR------GR 371 (443)
T ss_pred -----C--C--CCHHH---HHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHhh-----CCcEEeee------cc
Confidence 0 1 11111 2444466666554 467788888888888888876311 1211 111 35
Q ss_pred ccEEEEEeecCCCCCcC---HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC
Q 037063 473 GPSLAFNVFDWNGTRID---PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL 549 (588)
Q Consensus 473 g~iv~f~~~~~~g~~i~---~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~ 549 (588)
|.++.+.+.+.....-+ ...+.+.+.++||.+..+.. .+ .+||+.+.+.
T Consensus 372 G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~---------------------------~~-~~lr~~Ppl~ 423 (443)
T PRK06058 372 GAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGT---------------------------YG-NVIRLLPPLV 423 (443)
T ss_pred ceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCC---------------------------CC-CEEEEECCCc
Confidence 67777776432100001 22344555678998865310 11 2899999999
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q 037063 550 TNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 550 ~t~eDv~~li~~l~~~l~~ 568 (588)
.|.+||+++++.|.+++++
T Consensus 424 ~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 424 IGDELLREGLDVLEAALAD 442 (443)
T ss_pred cCHHHHHHHHHHHHHHHHh
Confidence 9999999999999998754
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-09 Score=114.71 Aligned_cols=351 Identities=12% Similarity=0.069 Sum_probs=198.8
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+. |--.+.+.+++.+.+..-. ... .. ....+...
T Consensus 37 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~--~~~----------------------~~------~~~~~~~~ 86 (421)
T PRK06777 37 VEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFT--HTA----------------------YQ------IVPYASYV 86 (421)
T ss_pred CCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcc--ccc----------------------cc------ccCChHHH
Confidence 368889998554 6667788888876664311 100 00 00022334
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHHh-----cC-----CE
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSKK-----RG-----AR 250 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~~-----~G-----~~ 250 (588)
++-+++++++... ....++|+.++|+|+..+++.-....|. +|+ ....||....-.+ .+... .+ ..
T Consensus 87 ~la~~l~~~~p~~-~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~-s~t~~~~~~~~~~~~~~~~ 164 (421)
T PRK06777 87 TLAERINALAPID-GPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTM-ALTGKVAPYKVGFGPFPGS 164 (421)
T ss_pred HHHHHHHHhCCCC-CCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHH-hhcCCCcccccCCCCCCCC
Confidence 5666777776431 1125999999999887766533222344 355 4556776333222 11110 00 01
Q ss_pred EEEEeccCCCC----ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCcc-CC---HHHH-HHHHHcCcEEEEeCCC
Q 037063 251 VSSAEFAWPNL----RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGAR-YS---YMWM-SVAAEKGWHVLLDATA 321 (588)
Q Consensus 251 v~~v~~~~~~~----~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~-~p---l~~I-~~a~~~g~~vvvDaa~ 321 (588)
+..++...... .-+.+.+++.+.+ ....++...|++.-+....|.. .| +++| ++|+++|+++|+|.++
T Consensus 165 ~~~~~~p~~~~~~~~~~~~~~l~~~~~~---~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~ 241 (421)
T PRK06777 165 IFHALYPNELHGVSVEEALSSVERLFKA---DIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQ 241 (421)
T ss_pred cEEcCCCccccCcCHHHHHHHHHHHHHh---ccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 22222210000 0124557776651 1122467888888888888864 56 5667 8999999999999985
Q ss_pred cC-CCCCC--CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccc
Q 037063 322 LG-SKDMD--TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESS 398 (588)
Q Consensus 322 ~~-~~d~~--~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~ 398 (588)
.. +..-. ....-...+|++ ++.|.+|. ...+|+++.++++++.+.+...+ +
T Consensus 242 tg~gr~g~~~~~~~~~~~pDiv--~~sK~l~~-G~pigav~~~~~i~~~~~~~~~~--~--------------------- 295 (421)
T PRK06777 242 TGFARTGKLFAMEYYDVKPDLI--TMAKSLGG-GMPISAVVGRAEVMDAPAPGGLG--G--------------------- 295 (421)
T ss_pred hCCccCCchhhhhhcCCCCCEE--eeehhhcC-CCceEEEEEcHHHHhccCCCCCC--C---------------------
Confidence 52 21101 111112248865 68997762 34589999998887766533211 0
Q ss_pred cccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEE
Q 037063 399 QSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAF 478 (588)
Q Consensus 399 f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f 478 (588)
|.....+ ..++..++|+.+++ +.+.++.+.+.+++.++|+++... .+.+.-+ ..+|.++.+
T Consensus 296 -----T~~~~p~-~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l~~~-----~~~i~~v-----rg~G~~~~i 356 (421)
T PRK06777 296 -----TYAGNPL-AVAAALAVLDVIAE---EKLCQRALILGAHLVEVLEKAKAS-----CPAIVDI-----RARGSMVAV 356 (421)
T ss_pred -----CCCcCHH-HHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHh-----CCCeEEe-----cCceEEEEE
Confidence 1111111 12444567776654 567888888899999888876211 1222222 135667766
Q ss_pred EeecC-CCCCc--CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHH
Q 037063 479 NVFDW-NGTRI--DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDT 555 (588)
Q Consensus 479 ~~~~~-~g~~i--~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv 555 (588)
.+.+. .+..- -...+.+.+.++||.+.++.. .| .+||+++.+..+.|++
T Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~---------------------------~g-~~lr~~ppl~i~~~~i 408 (421)
T PRK06777 357 EFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGV---------------------------HG-NVIRFLYPLTIPDAQF 408 (421)
T ss_pred EEecCccCCccHHHHHHHHHHHHhCCeEEeecCC---------------------------CC-CEEEEeCCCCCCHHHH
Confidence 55431 11100 012344445678999876411 11 2899999888999999
Q ss_pred HHHHHHHHHhhh
Q 037063 556 YRLWAFVSRFLD 567 (588)
Q Consensus 556 ~~li~~l~~~l~ 567 (588)
+++++.|.++|.
T Consensus 409 ~~~~~~l~~~l~ 420 (421)
T PRK06777 409 SKALNILTRLLA 420 (421)
T ss_pred HHHHHHHHHHHh
Confidence 999999998874
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-09 Score=116.11 Aligned_cols=353 Identities=11% Similarity=0.066 Sum_probs=200.1
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+.-|||..+. |.-.+.+.+++.+.+...... + . . + ..+...+
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~-~-----------------------~--~--~---~~~~~~~ 93 (451)
T PRK07678 45 QGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYF-P-----------------------L--T--Q---SHEPAIK 93 (451)
T ss_pred CCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCcc-c-----------------------c--c--c---CCHHHHH
Confidence 68899998654 666778888876665321110 0 0 0 0 1234457
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--C----CCCC-eEE-EcCCCchhHHHHHHHHHHh----c----
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--F----YSNP-RLL-TVYDHENEAAALMIESSKK----R---- 247 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--~----~~gd-~ll-~~~e~~s~~~~~~~~~a~~----~---- 247 (588)
+-++|.+++... ..|.|+.++|+|+..++.... . ++|. +|+ ....||......+ ..... .
T Consensus 94 lae~l~~~~~~~---~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~al-s~~~~~~~~~~~~~ 169 (451)
T PRK07678 94 LAEKLNEWLGGE---YVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGAL-AATGQAQRKYKYEP 169 (451)
T ss_pred HHHHHHHhCCCC---CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHh-hcCCCcccccccCC
Confidence 778888877542 259999999998876665321 1 1233 355 4556665332221 11000 0
Q ss_pred -CCEEEEEeccCCCCcc---------C---HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHH
Q 037063 248 -GARVSSAEFAWPNLRI---------H---SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAA 309 (588)
Q Consensus 248 -G~~v~~v~~~~~~~~i---------~---~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~ 309 (588)
...+..++.. ...+. + .+.+++.|. ....++...|++.-+...-|.+.| ++++ ++|+
T Consensus 170 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~ 244 (451)
T PRK07678 170 LAPGFLHVPPP-DCYRMPGIESEDIYDLECVKEIDRVMT----WELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQ 244 (451)
T ss_pred CCCCCEEeCCC-ccccccccCChHHHHHHHHHHHHHHHH----hcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHH
Confidence 0112333321 10111 1 123555564 112256788888878777888887 6667 8999
Q ss_pred HcCcEEEEeCCCc-CCC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeec
Q 037063 310 EKGWHVLLDATAL-GSK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEP 383 (588)
Q Consensus 310 ~~g~~vvvDaa~~-~~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~ 383 (588)
++|+++|+|.++. ++. -...+|+ .||++++ -|.+|.+-.-+|++++++++++.+.+.... +.
T Consensus 245 ~~g~llI~DEV~tGfGRtG~~~~~~~~gv---~PDivt~--gK~lggG~~Pi~av~~~~~i~~~~~~~~~~--~~----- 312 (451)
T PRK07678 245 KHGALLISDEVICGFGRTGKAFGFMNYGV---KPDIITM--AKGITSAYLPLSATAVKKEIYEAFKGKGEY--EH----- 312 (451)
T ss_pred HcCCEEEEeehhhcCCcCchhHHHHhcCC---CCCEEEe--ecccccCCcceeEEEEcHHHHHHHhccCcc--cc-----
Confidence 9999999999964 331 0123343 4998865 796652101289999999988766432100 00
Q ss_pred CCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-E
Q 037063 384 SFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-R 462 (588)
Q Consensus 384 ~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~ 462 (588)
|.-.+|.+-..+ ..++..++|+.+++ +.+.++++++.++|.+.|.++... .+.+ .
T Consensus 313 ---------------~~h~~T~~gnp~-~~aaa~a~l~~l~~---~~~~~~~~~~g~~l~~~l~~~~~~-----~~~v~~ 368 (451)
T PRK07678 313 ---------------FRHVNTFGGNPA-ACALALKNLEIMEN---ENLIERSAQLGELLLEQLKEELGE-----HPLVGD 368 (451)
T ss_pred ---------------cccCCCCCcCHH-HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHhc-----CCCEEE
Confidence 001223222222 12444566666655 456778888888888888653111 1221 1
Q ss_pred EeCCCCCCCcccEEEEEeecCCC--CCcC---HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcC
Q 037063 463 IYGPKVMFDRGPSLAFNVFDWNG--TRID---PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRS 537 (588)
Q Consensus 463 i~~p~~~~~rg~iv~f~~~~~~g--~~i~---~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~ 537 (588)
+- .+|.++.+.+..... ...+ ...+...+.++||.+....... ..
T Consensus 369 vr------g~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v------------------------~~ 418 (451)
T PRK07678 369 IR------GKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTV------------------------AG 418 (451)
T ss_pred EE------eeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccc------------------------cC
Confidence 21 346777777643211 1111 2345666778899885421000 01
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 538 GVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 538 g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+...||+++.+..|.+||+++++.+.+.|++
T Consensus 419 ~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~ 449 (451)
T PRK07678 419 YNNVLTLSPPLVISSEEIAFIVGTLKTALER 449 (451)
T ss_pred CCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 1138999999999999999999999988754
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-09 Score=115.80 Aligned_cols=345 Identities=12% Similarity=0.086 Sum_probs=198.6
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+. |--.+.+.+++.+.+....+... +....+...
T Consensus 40 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~------------------------------~~~~~~~~~ 89 (428)
T PRK07986 40 ADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMF------------------------------GGITHPPAI 89 (428)
T ss_pred CCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccc------------------------------cccCCHHHH
Confidence 368899998654 55667888887666532111000 000134445
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C----CCC-CeEE-EcCCCchhHHHHHHHHHH-------hcC
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F----YSN-PRLL-TVYDHENEAAALMIESSK-------KRG 248 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~----~~g-d~ll-~~~e~~s~~~~~~~~~a~-------~~G 248 (588)
++-+++++++...- ..|.|+.++++|+..+++... + ..| .+|+ ....||......+ .+.. ..+
T Consensus 90 ~la~~L~~~~p~~~--~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~-s~~~~~~~~~~~~~ 166 (428)
T PRK07986 90 ELCRKLVAMTPQPL--ECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAM-SVCDPDNSMHSLYK 166 (428)
T ss_pred HHHHHHHhhCCCCc--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhh-cccCCchhhhhccC
Confidence 67777777764322 359999999998877665321 1 123 3455 5556765332221 1100 000
Q ss_pred ---CEEEEEeccCCCC-----ccCHHHHHHHHhhhccccCCCcceEEEEeCC-CCCCCccCC----HHHH-HHHHHcCcE
Q 037063 249 ---ARVSSAEFAWPNL-----RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQ-SKVTGARYS----YMWM-SVAAEKGWH 314 (588)
Q Consensus 249 ---~~v~~v~~~~~~~-----~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~-sn~tG~~~p----l~~I-~~a~~~g~~ 314 (588)
..+..++...... .-|.+++++.|.. ..++...|++.-+ +...|.+.| +++| ++|+++|++
T Consensus 167 ~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~-----~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~l 241 (428)
T PRK07986 167 GYLPENLFAPAPQSRFDGEWDERDIAPFARLMAA-----HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGIL 241 (428)
T ss_pred CCCCCCEEECCCCcccchhhHHHHHHHHHHHHHh-----CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence 1122333210000 1245667777751 1245777777764 555676543 6667 999999999
Q ss_pred EEEeCCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcc
Q 037063 315 VLLDATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEI 388 (588)
Q Consensus 315 vvvDaa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~ 388 (588)
+|+|.++.. +. -....+ ..||+++ +-|.+|.+=.-+|++++++++.+.+.....+ .
T Consensus 242 LI~DEv~tG~GrtG~~fa~~~~g---v~PDi~t--~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~---~---------- 303 (428)
T PRK07986 242 LIADEIATGFGRTGKLFACEHAG---IAPDILC--LGKALTGGTMTLSATLTTREVAETISNGEAG---C---------- 303 (428)
T ss_pred EEEeccccCCccCCCeeeecccC---CCCCEEE--echhhhCCcccCcchhchHHHHHHhhcCCCC---c----------
Confidence 999999743 21 012223 3489885 7896552101257778888887766531100 0
Q ss_pred cccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCC
Q 037063 389 IELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKV 468 (588)
Q Consensus 389 ~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~ 468 (588)
|...+|..-..+ ..++..++|+.+++ +.+.++++.+.+++.+.|.++.. .+.+. .
T Consensus 304 ----------~~~~~T~~g~p~-~~aaa~a~L~~i~~---~~~~~~~~~~g~~l~~~l~~l~~------~~~i~---~-- 358 (428)
T PRK07986 304 ----------FMHGPTFMGNPL-ACAVANASLSLLES---GDWQQQVAAIEAQLREELAPLRD------APMVA---D-- 358 (428)
T ss_pred ----------cccCCCCCcCHH-HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHhc------CCCEE---e--
Confidence 000112221111 12444566776665 35688888888999888887621 12221 1
Q ss_pred CCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCC
Q 037063 469 MFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGC 548 (588)
Q Consensus 469 ~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~ 548 (588)
-..+|.++.+.+.+. .....+.+.+.++||.++.. | .+||+.+.+
T Consensus 359 vRg~Gl~~~ve~~~~----~~~~~~~~~l~~~Gl~~~~~------------------------------g-~~i~~~Ppl 403 (428)
T PRK07986 359 VRVLGAIGVVETTRP----VNMAALQRFFVEQGVWIRPF------------------------------G-KLIYLMPPY 403 (428)
T ss_pred EeccceEEEEEeCCc----ccHHHHHHHHHHCCcEEEec------------------------------C-CEEEEeCCC
Confidence 013567888777542 12456777788899988642 1 189999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhh
Q 037063 549 LTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 549 ~~t~eDv~~li~~l~~~l~~~ 569 (588)
..|.|||+++++.|.+.|+++
T Consensus 404 ~it~~ei~~~~~~l~~~l~~~ 424 (428)
T PRK07986 404 IILPEQLQRLTAAVNRAVQDE 424 (428)
T ss_pred CCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999887553
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=126.16 Aligned_cols=176 Identities=14% Similarity=0.141 Sum_probs=125.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....++++++|+++||.+ ..+|++++|.|..+++.++ .+|++.|+.....|-..... .......|++++.++.+
T Consensus 28 D~~~~~l~~~i~~l~g~e----~a~f~~sGT~An~~al~~~-~~~~~~vi~~~~aHi~~~E~-ga~~~~~G~~~~~l~~~ 101 (290)
T PF01212_consen 28 DPTTARLEERIAELFGKE----AALFVPSGTMANQLALRAH-LRPGESVICADTAHIHFDET-GAIEELSGAKLIPLPSD 101 (290)
T ss_dssp SHHHHHHHHHHHHHHTSS----EEEEESSHHHHHHHHHHHH-HHTTEEEEEETTEHHHHSST-THHHHHTTCEEEEEBEC
T ss_pred ChhHHHHHHHHHHHcCCC----EEEEeCCCChHHHHHHHHH-HhcCCceeccccceeeeecc-chhhHhcCcEEEECCCc
Confidence 577889999999999984 2679999999999999998 58888877655544211111 12234479999999875
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCC-CccCCHHHH----HHHHHcCcEEEEeCCCc------CCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVT-GARYSYMWM----SVAAEKGWHVLLDATAL------GSKD 326 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~t-G~~~pl~~I----~~a~~~g~~vvvDaa~~------~~~d 326 (588)
++|.+++++|++.+.... ....++++|+++..+|.. |+.+++++| ++||++|++|++|++=+ .+..
T Consensus 102 -~~G~l~~~~l~~~~~~~~--~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~ 178 (290)
T PF01212_consen 102 -DDGKLTPEDLEAAIEEHG--AHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVS 178 (290)
T ss_dssp -TGTBB-HHHHHHHHHHHT--GTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHH
T ss_pred -ccCCCCHHHHHHHhhhcc--ccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhccccc
Confidence 449999999999998311 123578999999988854 899998885 67999999999999922 2211
Q ss_pred CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhc
Q 037063 327 MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASV 367 (588)
Q Consensus 327 ~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~ 367 (588)
+.++- ..+|.+.+|++|-+|. | +-++|+.+++.++.
T Consensus 179 ~~e~~---~~~D~v~~~~tK~~g~-~-~Gavl~~~~~~i~~ 214 (290)
T PF01212_consen 179 LAEIA---AGADSVSFGGTKNGGA-P-GGAVLAGNKEFIAK 214 (290)
T ss_dssp HHHHH---TTSSEEEEETTSTT-S-S-SEEEEEESHHHHHH
T ss_pred HHHHh---hhCCEEEEEEEccccc-c-cceEEEechHHHHH
Confidence 22221 2389999999998774 4 45888888886653
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-09 Score=105.64 Aligned_cols=346 Identities=16% Similarity=0.188 Sum_probs=213.7
Q ss_pred CCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHhCCCCC
Q 037063 118 IGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMNISED 197 (588)
Q Consensus 118 a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lga~~~ 197 (588)
+|-.-+|.+|+..+..++.. ..+ . +.+-..+|+++. .-..+++++...+.++++++ +
T Consensus 13 aGPAklp~~VL~e~qkdl~n-~~g-~----------GisV~EmSHRsk----------~f~kii~~tes~lreLlniP-d 69 (370)
T KOG2790|consen 13 AGPAKLPESVLLEAQKDLLN-FNG-S----------GISVMEMSHRSK----------DFAKIINDTESLLRELLNIP-D 69 (370)
T ss_pred CCcccCCHHHHHHHHHHhhc-cCC-C----------cceEEEecccch----------hHHHHHHHHHHHHHHHHcCC-C
Confidence 45557899999887666532 111 0 112222333221 22688999999999999995 6
Q ss_pred CceEEEecC-HHHHHHHHHHhCC-CCCCCe---EEEcCCCchhHHHHHHHHHHhcCCEEEEE-eccC-CCCcc-CHHHHH
Q 037063 198 DYTLVFTAN-QSSAFKLLAESYP-FYSNPR---LLTVYDHENEAAALMIESSKKRGARVSSA-EFAW-PNLRI-HSGKLM 269 (588)
Q Consensus 198 e~~vvft~g-~T~al~lv~~s~~-~~~gd~---ll~~~e~~s~~~~~~~~~a~~~G~~v~~v-~~~~-~~~~i-~~e~l~ 269 (588)
+|.|+|..| +|.-+..+...+- ++.|+. |+|..- | ... .+-|++.|..-..+ +... ..+.+ |.+.++
T Consensus 70 n~~vlf~QGGGt~qFaAv~lNL~glK~g~~AdYiVTGsW--S--~KA-~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~ 144 (370)
T KOG2790|consen 70 NYKVLFLQGGGTGQFAAVPLNLIGLKHGRCADYVVTGSW--S--AKA-AEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWE 144 (370)
T ss_pred ceeEEEEeCCCcccccccchhhhccccCCccceEEeccc--c--HHH-HHHHHhhCCceEEeccccccccCcCCChhhcc
Confidence 688888864 5666665555442 355543 555322 1 122 34456666543333 3321 11233 333332
Q ss_pred HHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHHHHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCC
Q 037063 270 KKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFG 349 (588)
Q Consensus 270 ~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G 349 (588)
+ +++.+.|.++...++.|+-++--- .-.-+|..++.|.++-+- ..++|++. .+.+....+|-.|
T Consensus 145 --~--------~~da~yvyyCaNETVHGVEf~~~P--~~~~~~~vlVaDmSSnfl--SrpvDvsk--~gvi~aGAQKN~G 208 (370)
T KOG2790|consen 145 --L--------NPDASYVYYCANETVHGVEFDFIP--VNDPKGAVLVADMSSNFL--SRPVDVSK--FGVIFAGAQKNVG 208 (370)
T ss_pred --c--------CCCccEEEEecCceeeceecCCCC--CCCCCCceEEEecccchh--cCCccchh--cceEEeccccccC
Confidence 1 156779999999999998775322 123468899999986553 35666665 4678889999999
Q ss_pred CCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHh-CH
Q 037063 350 ENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL-GL 428 (588)
Q Consensus 350 ~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~-G~ 428 (588)
|.|+-+++||++++....+.... .. |+..++.... -.-|++..++ +.+...++++.+- |+
T Consensus 209 --~aG~Tvvivr~dllg~~~~~tP~---v~-------dyk~~~~NnS----lyNTpP~f~i---y~~~Lv~~~il~~GGl 269 (370)
T KOG2790|consen 209 --PAGVTVVIVRKDLLGNALDITPS---VL-------DYKIMDKNNS----LYNTPPCFGI---YVMGLVFEWILEKGGL 269 (370)
T ss_pred --ccccEEEEEehhhhcccccCCcc---cc-------ceeeeccccc----cccCCCeeee---eehhhHHHHHHhcccH
Confidence 88999999999997644332110 00 0111111111 1347777776 7788899988775 58
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc-cEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccc
Q 037063 429 ILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG-PSLAFNVFDWNGTRIDPALVQKLADRHNISLSCG 507 (588)
Q Consensus 429 ~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg-~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G 507 (588)
..+.+-..+-++.+++.|.+- .++-. .|-++..|+ --|.|++.+.. +..+.+.+.++++=|.+- |
T Consensus 270 ~a~e~~n~~KskllYd~iD~s---------~gfy~-cpVe~~~RS~MNV~Fri~~d~---Le~eFLkeA~~~~mv~LK-G 335 (370)
T KOG2790|consen 270 AAMEKLNQEKSKLLYDAIDNS---------NGFYR-CPVEPSVRSRMNVPFRIEKDE---LEAEFLKEAAKEHMVQLK-G 335 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---------CCeEE-cccchhhhhhcccceeecchH---HHHHHHHHHHHhhhhccc-c
Confidence 889988889999999999873 23321 233333444 56778887522 444445555555544442 2
Q ss_pred cccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 508 FLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 508 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+ ..++.||.|+--.-+.|++++|++++++|.+.
T Consensus 336 h----------------------------RSVGGiRASlYNAisv~~~q~L~~~m~~F~k~ 368 (370)
T KOG2790|consen 336 H----------------------------RSVGGIRASLYNAISVEEVQKLAAFMKEFQKK 368 (370)
T ss_pred c----------------------------cccccchhhhhccccHHHHHHHHHHHHHHHHh
Confidence 1 11238999998888999999999999999764
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-09 Score=116.86 Aligned_cols=350 Identities=13% Similarity=0.089 Sum_probs=197.5
Q ss_pred CCCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+ .|.-.+.+++++.+.+..-...+. . ++. ..+...
T Consensus 51 ~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~~-----------------------~-----~~~-~~~~~~ 101 (460)
T PRK12403 51 NDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNM-----------------------F-----FHT-THPAVI 101 (460)
T ss_pred CCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCeec-----------------------c-----ccc-CCHHHH
Confidence 36788999543 456667888887666643111100 0 000 134556
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-----CCCCe-EEE-cCCCchhHHHHHHHHHHh---c--C-
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-----YSNPR-LLT-VYDHENEAAALMIESSKK---R--G- 248 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-----~~gd~-ll~-~~e~~s~~~~~~~~~a~~---~--G- 248 (588)
++-+++++++...- ..++|+.++|+|+..++.... + ++++. |+. ...||......+ .+... . +
T Consensus 102 ~lae~L~~~~p~~~--~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~-s~s~~~~~~~~~~ 178 (460)
T PRK12403 102 ELSELLFSLLPGHY--SHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAAT-ALGGMKFMHEMGG 178 (460)
T ss_pred HHHHHHHHhCCCCc--CEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhh-hcCCCccccccCC
Confidence 78888888876422 249999999999887776542 1 23334 443 345565333322 11100 0 0
Q ss_pred --CEEEEEeccCCC---Ccc--------CHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHH
Q 037063 249 --ARVSSAEFAWPN---LRI--------HSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAE 310 (588)
Q Consensus 249 --~~v~~v~~~~~~---~~i--------~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~ 310 (588)
-.+..+|..... ..+ +.+++++.+. +...++...|++.-+...-|.+.| ++.+ ++|++
T Consensus 179 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~----~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~ 254 (460)
T PRK12403 179 LIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKIL----ELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQ 254 (460)
T ss_pred CCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHH----HhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence 012333321000 001 1245655554 112246778888888888899998 8889 99999
Q ss_pred cCcEEEEeCCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecC
Q 037063 311 KGWHVLLDATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPS 384 (588)
Q Consensus 311 ~g~~vvvDaa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~ 384 (588)
+|+++|+|.++.. +. -.+.+|+ .||+++ +-|-+|.+-.-+|++++++++.+.+.... + .
T Consensus 255 ~g~lLI~DEV~tGfGRtG~~~a~e~~gv---~PDiv~--~gK~lggG~~Piga~v~~~~i~~~~~~~~-~---~------ 319 (460)
T PRK12403 255 YDVLLCADEVIGGFGRTGEWFAHEHFGF---EPDTLS--IAKGLTSGYVPMGGLVLSKRIAEALVEQG-G---V------ 319 (460)
T ss_pred cCCEEEEeccccCCCcCchhhhhhhcCC---CCCeEE--EcccccccccceEEEEECHHHHHHHhcCC-C---c------
Confidence 9999999999743 21 1123343 389886 78966621013788888888766553211 0 0
Q ss_pred CCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHHHcccCCCCCCCCCeEEE
Q 037063 385 FSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRAR-YLINWLANALMNLHHPHSETGIPLVRI 463 (588)
Q Consensus 385 ~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~-~L~~~l~~~L~~L~h~~~~~g~~~v~i 463 (588)
|.-.+|..-..+ ..++..++|+.+++ +.+.++++ .+.++|.+.|+++... .+.+.-
T Consensus 320 --------------~~~~~T~~gnPl-~~Aaala~L~~i~~---~~l~~~~~~~~g~~l~~~L~~l~~~-----~~~i~~ 376 (460)
T PRK12403 320 --------------FAHGLTYSGHPV-AAAVAIANLKALRD---EGVVTRVKDDTGPYLQRCLREVFGD-----HPLVGE 376 (460)
T ss_pred --------------cccCCCCCCCHH-HHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHhc-----CCCEEe
Confidence 000122111111 12445566777665 34567775 7777887777665211 122211
Q ss_pred eCCCCCCCcccEEEEEeecCCC--CCcC-----HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCc
Q 037063 464 YGPKVMFDRGPSLAFNVFDWNG--TRID-----PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETR 536 (588)
Q Consensus 464 ~~p~~~~~rg~iv~f~~~~~~g--~~i~-----~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~ 536 (588)
+ ..+|.++.+.+.+... .... ...+...+.++||.++..
T Consensus 377 v-----rG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------------------------- 422 (460)
T PRK12403 377 V-----QGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRST----------------------------- 422 (460)
T ss_pred E-----eecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEec-----------------------------
Confidence 1 1346677776643211 1111 112334456688887531
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 537 SGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 537 ~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.+ .+|+++.+..|.+||+++++.+.+.|++
T Consensus 423 ~~--~~~l~Ppl~it~~eid~~~~~l~~al~~ 452 (460)
T PRK12403 423 LG--RMIMAPALVAGRAEIDELVDKTRIAVDR 452 (460)
T ss_pred CC--EEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 11 6899999999999999999999998875
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.2e-10 Score=118.21 Aligned_cols=240 Identities=14% Similarity=0.148 Sum_probs=139.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCC--CeEEE-cCCCchhHHHHHHHHHHhcCCEEEEE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSN--PRLLT-VYDHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~g--d~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
-+.+-+....|+++.|.+... .-+-.++|++-..+..+.....+ ++++. ..-|+. ...-+..+++..|.+++.+
T Consensus 109 Lq~lfe~Qs~i~eLTGmdvaN--aSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~-~~~v~~t~a~~~g~~iv~~ 185 (429)
T PF02347_consen 109 LQALFEYQSMICELTGMDVAN--ASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQ-TRAVLRTYAAPLGIEIVEV 185 (429)
T ss_dssp HHHHHHHHHHHHHHHTSSEE---SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CH-HHHHHHHHCCHCCEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCccC--CCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChh-hHHHHHHhhhhCCeEEEEe
Confidence 567779999999999996321 23445777655555444333333 36554 444554 4445566777889999999
Q ss_pred eccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCc---CC-CCCCC
Q 037063 255 EFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATAL---GS-KDMDT 329 (588)
Q Consensus 255 ~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~---~~-~d~~~ 329 (588)
+.+ +++..+ + +++..|++..++ ..|.+.++++| +++|++|.++++ ++-. .. +....
T Consensus 186 ~~~-~~~~~d--------~--------~~~a~v~vq~Pn-~~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge 246 (429)
T PF02347_consen 186 PLD-EDGTTD--------D--------DDTAAVMVQNPN-TFGVFEDIKEIADIAHAAGALVIV-GADPNALGGLKSPGE 246 (429)
T ss_dssp -BB-TTCSB---------S--------TTEEEEEEESS--TTSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGG
T ss_pred ccc-ccCCcc--------c--------cCeEEEEeecCC-CCceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhh
Confidence 987 555554 4 789999999885 69999999999 999999999988 6622 22 12344
Q ss_pred CCCCCCCCcEEEeccCccCCC----CCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcc-cccccccc-cccccCC
Q 037063 330 LGLSLFKPDFLICSFYKIFGE----NPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEI-IELETLDE-SSQSKFP 403 (588)
Q Consensus 330 l~l~~~~~D~vv~S~~K~~G~----~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~-~~~~~~~~-~~f~e~G 403 (588)
+| +|+++.+ ||-||. +..|.|++.+++++...++-...| ..........+ ..+..+.. -|- |-.
T Consensus 247 ~G-----ADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG---~t~D~~G~~~~~ltLqtREQHIrR-eKA 316 (429)
T PF02347_consen 247 YG-----ADIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVG---QTKDADGKRAFVLTLQTREQHIRR-EKA 316 (429)
T ss_dssp GT------SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEE---EEEBCCCSCCEEEE-GGGTCHHHG-CCS
T ss_pred cC-----ccEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceec---ccccccccceeeeccccccccccc-cch
Confidence 44 9999666 775553 234689999999988877765543 21111110000 11111211 022 667
Q ss_pred CCCccchhhHHHHHHHH--HHHHHhCHHHHHHHHHHHHHHHHHHHHcc
Q 037063 404 ESSISGVSSKLVECKGL--DHADALGLILISNRARYLINWLANALMNL 449 (588)
Q Consensus 404 T~~~~~~~~~~al~~aL--~~l~~~G~~~i~~r~~~L~~~l~~~L~~L 449 (588)
|.|+..-..+.++.+++ -++-.-|+.++.+++...++|+.++|+++
T Consensus 317 tSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~ 364 (429)
T PF02347_consen 317 TSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI 364 (429)
T ss_dssp TT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred hhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88876543233332222 22333469999999999999999999984
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.9e-09 Score=113.24 Aligned_cols=346 Identities=10% Similarity=0.043 Sum_probs=199.6
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
.++.-|||..+. |--.+.+.+++.+.+........ . ....+...
T Consensus 41 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~---------------------~---------~~~~~~~~ 90 (429)
T PRK06173 41 KDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMF---------------------G---------GFTHEPAV 90 (429)
T ss_pred CCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCccc---------------------c---------ccCCHHHH
Confidence 368889997654 55667788877665532110000 0 00134445
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-----CCCCe-EE-EcCCCchhHHHHHHHHH-----Hhc--
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-----YSNPR-LL-TVYDHENEAAALMIESS-----KKR-- 247 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-----~~gd~-ll-~~~e~~s~~~~~~~~~a-----~~~-- 247 (588)
++-+++++.+...- ..|.|+.++++|+..++.... + ++|.+ |+ ....||......+. +. .+.
T Consensus 91 ~lae~L~~~~p~~~--~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s-~~~~~~~~~~~~ 167 (429)
T PRK06173 91 ELAQKLLEILPPSL--NKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMS-VCDPVTGMHGLF 167 (429)
T ss_pred HHHHHHHhhCCCCc--CEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhc-cCCCchhhhhcc
Confidence 77777777764222 359999999998876655321 1 13443 55 45566653221111 10 000
Q ss_pred C---CEEEEEeccCCC-----CccCHHHHHHHHhhhccccCCCcceEEEEeCC-CCCCCccCC----HHHH-HHHHHcCc
Q 037063 248 G---ARVSSAEFAWPN-----LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQ-SKVTGARYS----YMWM-SVAAEKGW 313 (588)
Q Consensus 248 G---~~v~~v~~~~~~-----~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~-sn~tG~~~p----l~~I-~~a~~~g~ 313 (588)
+ ..+..+|..... ..-+.+.|++.|.. ..++...|++.-+ +..-|.+.| ++++ ++|+++|+
T Consensus 168 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~-----~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~ 242 (429)
T PRK06173 168 NHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQ-----KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGV 242 (429)
T ss_pred cccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHh-----CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCC
Confidence 0 112334331000 00134556677751 1246788888875 777788754 3336 88999999
Q ss_pred EEEEeCCCcC-CCC-----CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCc
Q 037063 314 HVLLDATALG-SKD-----MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSE 387 (588)
Q Consensus 314 ~vvvDaa~~~-~~d-----~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~ 387 (588)
++|+|.++.. +.. ...++ ..||+++ +-|.+|.+=.-+|.+++++++.+.+.+....
T Consensus 243 llI~DEv~tG~GrtG~~~a~~~~g---v~PDiv~--~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~------------- 304 (429)
T PRK06173 243 LLIFDEIATGFGRTGKLFALEHAG---VVPDIMC--IGKALTGGYLTLSATITTEAIAQTICSGEAK------------- 304 (429)
T ss_pred eEEecchhcCCCcCCcchHHHhcC---CCCCEEE--eehhhhCCccccceEEecHHHHHHHhcCCCC-------------
Confidence 9999999742 210 11223 2489876 7896552101258888888877655421100
Q ss_pred ccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCC
Q 037063 388 IIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPK 467 (588)
Q Consensus 388 ~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~ 467 (588)
.|.-.+|.....+ ..++..++|+.+++. .+.++++++.++|.+.|.++. +.+.+. .
T Consensus 305 ----------~~~~~~T~~g~p~-~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~~~------~~~~v~---~- 360 (429)
T PRK06173 305 ----------CFMHGPTFMANPL-ACAIAAESIRLLLES---PWQQNIQRIEAQLKQELAPAA------EFDSVA---E- 360 (429)
T ss_pred ----------ccccCCCCCcCHH-HHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhh------cCCCee---e-
Confidence 0001112111111 124555677777653 457888888888988887641 112221 0
Q ss_pred CCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecC
Q 037063 468 VMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALG 547 (588)
Q Consensus 468 ~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg 547 (588)
. ..+|.++.+.+.+. .....+.+.|.++||.++.. | .+||+.+-
T Consensus 361 v-Rg~Gl~~~iel~~~----~~~~~i~~~l~e~Gi~v~~~------------------------------g-~~l~~~Pp 404 (429)
T PRK06173 361 V-RVLGAIGVVEMKEP----VNMATLQPRFVEHGIWVRPF------------------------------G-KLVYIMPP 404 (429)
T ss_pred e-eccceEEEEEeCCc----ccHHHHHHHHHHCCeEEEec------------------------------C-CEEEEeCC
Confidence 0 13577888887642 23456777888899988642 1 18999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhh
Q 037063 548 CLTNFEDTYRLWAFVSRFLDADF 570 (588)
Q Consensus 548 ~~~t~eDv~~li~~l~~~l~~~~ 570 (588)
+..|.+||+++++.|.+.|++-+
T Consensus 405 l~it~~ei~~~~~~l~~~l~~~~ 427 (429)
T PRK06173 405 FIISPDELSQLTSGLLRVLKQEY 427 (429)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987643
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-09 Score=105.60 Aligned_cols=307 Identities=14% Similarity=0.134 Sum_probs=182.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--CCCCCe--EEEcC--CCchhHHHHHHHHHHhcCCE-
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--FYSNPR--LLTVY--DHENEAAALMIESSKKRGAR- 250 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--~~~gd~--ll~~~--e~~s~~~~~~~~~a~~~G~~- 250 (588)
..+++.+.+.+.+-+|.+-++..|.+|+|+..++..++.-|. ...|++ |+.+. ||-. ++. .|.+
T Consensus 77 ~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiG--------Y~d-~~l~~ 147 (417)
T COG3977 77 AVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIG--------YAD-AGLEE 147 (417)
T ss_pred hHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhcc--------ccc-cccCc
Confidence 456666666666667766555679999999999888877664 234554 65432 3221 110 0110
Q ss_pred EEEEeccC-----C----CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEE
Q 037063 251 VSSAEFAW-----P----NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLL 317 (588)
Q Consensus 251 v~~v~~~~-----~----~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvv 317 (588)
=.+|...+ + ..++|.++|. +. +.+++|+++-+.|+||.++.-+++ ++|++||+++++
T Consensus 148 d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~--------e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliI 217 (417)
T COG3977 148 DLFVSAKPNIELLPAGQFKYHVDFEHLH--IG--------ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLII 217 (417)
T ss_pred cceeeccCCcccccccceeeccCHHHcc--cc--------cccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEE
Confidence 01121110 1 1234555443 22 689999999999999999987775 679999999999
Q ss_pred eCCCcCCC---CCCCCCCCCCCCc-EEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccc
Q 037063 318 DATALGSK---DMDTLGLSLFKPD-FLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELET 393 (588)
Q Consensus 318 Daa~~~~~---d~~~l~l~~~~~D-~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~ 393 (588)
|.|-.+|. ...+..+ .|+.. +++.|.+| +|.+..++|+++.++++++.+.... |.++..+.
T Consensus 218 DnAYg~PFP~iifsd~~~-~w~~NiilC~SLSK-~GLPG~R~GIiIane~viqaitnmn----~iisLap~--------- 282 (417)
T COG3977 218 DNAYGVPFPGIIFSDATP-LWNENIILCMSLSK-LGLPGSRCGIIIANEKVIQAITNMN----GIISLAPG--------- 282 (417)
T ss_pred ecccCCCCCceecccccc-cCCCCEEEEeehhh-cCCCCcceeEEEccHHHHHHHHhcc----ceeeecCC---------
Confidence 99987772 1111111 23444 45669999 5554568999999999988776554 44443321
Q ss_pred ccccccccCCCCCccchhhHHHHHHHHH--HHHHhCHHHH----HHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCC
Q 037063 394 LDESSQSKFPESSISGVSSKLVECKGLD--HADALGLILI----SNRARYLINWLANALMNLHHPHSETGIPLVRIYGPK 467 (588)
Q Consensus 394 ~~~~~f~e~GT~~~~~~~~~~al~~aL~--~l~~~G~~~i----~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~ 467 (588)
++ +- +..+..++ .+.++.-+-| .++.+.....|+..|-+ ..+.|.-|
T Consensus 283 ----~~---------G~---Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~----------~~~~iHkp- 335 (417)
T COG3977 283 ----RM---------GP---AIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPE----------YRCLIHKP- 335 (417)
T ss_pred ----Cc---------cH---HHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCc----------cceeeecC-
Confidence 11 00 11112222 1111111111 22333333333433333 23555543
Q ss_pred CCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecC
Q 037063 468 VMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALG 547 (588)
Q Consensus 468 ~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg 547 (588)
.|.|+.+.-++ ..+++..++...|++.|+.+-+|..-=+|....+ .....++|+|
T Consensus 336 ----EGAIFlWLWf~--dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ew-----------------pH~hqC~Rmn-- 390 (417)
T COG3977 336 ----EGAIFLWLWFK--DLPITTEELYQRLKARGVLMVPGHYFFPGLDKEW-----------------PHTHQCMRMN-- 390 (417)
T ss_pred ----Ccceeehhhhc--cCCCCHHHHHHHHHhCeEEEecccccCCCCCCCC-----------------CCccceEEEe--
Confidence 46776654322 3458889999999999999999965544332211 0112399999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhh
Q 037063 548 CLTNFEDTYRLWAFVSRFLDADF 570 (588)
Q Consensus 548 ~~~t~eDv~~li~~l~~~l~~~~ 570 (588)
+.-+.+.|++-++.|.+-+++-|
T Consensus 391 ~~~~~~~ie~Gva~lae~ve~~y 413 (417)
T COG3977 391 YVPEPEKIEKGVAILAEEVERAY 413 (417)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Confidence 45589999999999988776654
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.6e-09 Score=111.99 Aligned_cols=350 Identities=9% Similarity=0.053 Sum_probs=188.7
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
.++..|||..+. |.-.+.+.+++.+.+........ . . .+ .....
T Consensus 38 ~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~------------------------~-~--~~---~~~~~ 87 (425)
T PRK08088 38 VEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCF------------------------Q-V--LA---YEPYL 87 (425)
T ss_pred CCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccc------------------------c-c--cC---CHHHH
Confidence 367889999664 55577888887666532111000 0 0 00 11223
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeE-EEcCCCchhHHHHHHHHHHh-----cCC-----E
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRL-LTVYDHENEAAALMIESSKK-----RGA-----R 250 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~l-l~~~e~~s~~~~~~~~~a~~-----~G~-----~ 250 (588)
++-+.+.+..+.+.. ..++|+.++++|+..++.... +....+| .....||...... ...-.. .|. .
T Consensus 88 ~la~~l~~~~~~~~~-~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~-~~~~~~~~~~~~~~~~~~~~ 165 (425)
T PRK08088 88 ELCEKMNQKVPGDFA-KKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYT-LALTGKVNPYSAGMGLMPGH 165 (425)
T ss_pred HHHHHHHHhCCCCCC-CEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHH-HHhhCCCCccccCCCCCCCC
Confidence 555556666554321 258888888885544333211 2223344 4555666532222 111000 010 0
Q ss_pred EEE--EeccCCCCccC----HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeC
Q 037063 251 VSS--AEFAWPNLRIH----SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDA 319 (588)
Q Consensus 251 v~~--v~~~~~~~~i~----~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDa 319 (588)
+.. +|.+. + .++ .++|++.+.. ....++...|++.-+...-|.+.+ +++| ++|+++|+++|+|.
T Consensus 166 ~~~~~~p~~~-~-~~~~~~~~~~l~~~l~~---~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~De 240 (425)
T PRK08088 166 VYRALYPCPL-H-GVSEDDAIASIERIFKN---DAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADE 240 (425)
T ss_pred cEEcCCCccc-c-CccHHHHHHHHHHHHHh---ccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 111 22211 1 122 3457777751 011245677777777777788777 7778 99999999999999
Q ss_pred CCcC-CCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccc
Q 037063 320 TALG-SKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDE 396 (588)
Q Consensus 320 a~~~-~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~ 396 (588)
++.. +.. +..++.....+| +.|+.|.+|. ...+|+++.++++++.+.....+ .
T Consensus 241 v~~g~g~~g~~~~~~~~~~~pd--i~s~sK~l~~-G~rig~v~~~~~~~~~~~~~~~~--~------------------- 296 (425)
T PRK08088 241 VQTGAGRTGTLFAMEQMGVAAD--LTTFAKSIAG-GFPLAGVTGRAEVMDAIAPGGLG--G------------------- 296 (425)
T ss_pred cccCCCcCcchhHHhhcCCCCC--EEEEeccccC-CCcceeeEecHHHHhhcCCCCCC--C-------------------
Confidence 8552 211 111111122356 5788997773 35589999998887766543211 0
Q ss_pred cccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE
Q 037063 397 SSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL 476 (588)
Q Consensus 397 ~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv 476 (588)
..+..++ ....++..++....+.+.++++.+.+++.+.|..+... .|.+.... ..|.++
T Consensus 297 ----t~~~~~~-------~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~v~-----g~G~~~ 355 (425)
T PRK08088 297 ----TYAGNPI-------ACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEK-----HPEIGDVR-----GLGAMI 355 (425)
T ss_pred ----CCCcCHH-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh-----CCCeEEEe-----ccceEE
Confidence 0111111 12233344443334566777777777777777665211 12221111 126666
Q ss_pred EEEeecCCC----CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCH
Q 037063 477 AFNVFDWNG----TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNF 552 (588)
Q Consensus 477 ~f~~~~~~g----~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~ 552 (588)
.+.+.+... .......+.+.+.++||.+..+.. . ..+||+++....+.
T Consensus 356 ~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~---------------------------~-~~~iRl~~~~~~t~ 407 (425)
T PRK08088 356 AIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGP---------------------------Y-YNVLRILVPLTIED 407 (425)
T ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCC---------------------------C-CCEEEEECCCCcCH
Confidence 676632110 011234566666778988753210 0 12899999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 037063 553 EDTYRLWAFVSRFLDA 568 (588)
Q Consensus 553 eDv~~li~~l~~~l~~ 568 (588)
+||++.++.|.+.+++
T Consensus 408 ~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 408 AQIRQGLEIIAQCFDE 423 (425)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988754
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.6e-09 Score=114.91 Aligned_cols=347 Identities=10% Similarity=0.068 Sum_probs=198.7
Q ss_pred CCCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+ .|--.+.+.+++.+.+.......+ .. . ..+...
T Consensus 39 ~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~---------------------~~----~-----~~~~~~ 88 (445)
T PRK08593 39 VDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTP---------------------AY----M-----YHEPLV 88 (445)
T ss_pred CCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCccc---------------------cc----c-----CCHHHH
Confidence 36888999754 355567888887666533111000 00 0 134455
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHH-----hc--C---CE
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSK-----KR--G---AR 250 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~-----~~--G---~~ 250 (588)
++-++|++.+.... ...|.|+.++++|+..+++....-.|. +|+ ....||......+ .+.. +. + ..
T Consensus 89 ~lae~L~~~~p~~~-~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~al-s~s~~~~~~~~~~~~~~~~ 166 (445)
T PRK08593 89 RLAKKLCELAPGDF-EKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSL-SMSGISLNMRRKYGPLLPG 166 (445)
T ss_pred HHHHHHHHhCCCCC-CCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHH-hhcCCCcccccCCCCCCCC
Confidence 77778888764321 135999999999988776632111344 355 4556776333221 1111 00 0 12
Q ss_pred EEEEeccCCC----CccCH-------HHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcE
Q 037063 251 VSSAEFAWPN----LRIHS-------GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWH 314 (588)
Q Consensus 251 v~~v~~~~~~----~~i~~-------e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~ 314 (588)
+..+|..... ...+. +++++.+.. ....+++..|++.-+....|.+.| ++.| ++|+++|++
T Consensus 167 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~l 243 (445)
T PRK08593 167 FVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEK---YLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGIL 243 (445)
T ss_pred cEEeCCCccccccccCCcHHHHHHHHHHHHHHHHh---hcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 3344432110 00111 334444431 011256888999989888999988 8888 999999999
Q ss_pred EEEeCCCc-CCCC-----CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcc
Q 037063 315 VLLDATAL-GSKD-----MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEI 388 (588)
Q Consensus 315 vvvDaa~~-~~~d-----~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~ 388 (588)
+|+|.++. ++.. ...+++ .||++ ++-|.+|. ..-+|+++.++++++.+...... .+
T Consensus 244 lI~DEv~tg~GrtG~~~a~~~~gv---~pDi~--t~gK~l~~-G~p~gav~~~~~i~~~~~~~~~~--~T---------- 305 (445)
T PRK08593 244 FAVDDIQQGLGRTGKWSSISHFNI---TPDLM--SFGKSLAG-GMPMSAIVGRKEIMESLEAPAHL--FT---------- 305 (445)
T ss_pred EEEechhhCCCcCchHHHHHhcCC---CCCEe--eecccccC-CcccEEEEEcHHHHhhhccCCCC--CC----------
Confidence 99999963 3210 122332 38866 56896652 12389999999887766421111 00
Q ss_pred cccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCC
Q 037063 389 IELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKV 468 (588)
Q Consensus 389 ~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~ 468 (588)
..|.+ .+ .++..++|+.+++ +.+.++++.+.++|.+.|.++... .+.+.-+
T Consensus 306 ------------~~~~p--l~---~aaa~a~l~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~-----~~~v~~v---- 356 (445)
T PRK08593 306 ------------TGANP--VS---CAAALATIDMIED---ESLLQRSAEKGEYARKRFDQWVSK-----YNFVGDV---- 356 (445)
T ss_pred ------------CCCCH--HH---HHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhc-----CCcEEEE----
Confidence 01111 11 2445567777665 467788888888888888875211 1222110
Q ss_pred CCCcccEEEEEeecCCCCCc-C---HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEE
Q 037063 469 MFDRGPSLAFNVFDWNGTRI-D---PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTA 544 (588)
Q Consensus 469 ~~~rg~iv~f~~~~~~g~~i-~---~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRv 544 (588)
...|.++.+.+........ + ...+...+.++||.+... +...+|+
T Consensus 357 -rG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~------------------------------~~~~lr~ 405 (445)
T PRK08593 357 -RGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAV------------------------------AGNVLRF 405 (445)
T ss_pred -eccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEecc------------------------------CCCEEEE
Confidence 1245566665542111001 1 234556666789987431 1128999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 545 ALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 545 Slg~~~t~eDv~~li~~l~~~l~~ 568 (588)
++.+..|.+||+++++.+.+.+++
T Consensus 406 ~p~l~~t~~~id~~~~~l~~~l~~ 429 (445)
T PRK08593 406 QPPLVITYEQLDTALNTIEQAFTA 429 (445)
T ss_pred ECCCccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998865
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.6e-09 Score=114.52 Aligned_cols=353 Identities=14% Similarity=0.110 Sum_probs=195.7
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|..+.-|||..+. |--.+.+.+++.+.+.......+ + .. ..+..
T Consensus 50 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~----------------------~---~~-----~~~~~ 99 (451)
T PRK06918 50 DVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTGF----------------------N---VM-----MYEPY 99 (451)
T ss_pred eCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCccc----------------------c---cc-----ccHHH
Confidence 3368889997554 66677888888766643211100 0 00 12445
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHHh-----c--C---C
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSKK-----R--G---A 249 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~~-----~--G---~ 249 (588)
.++-+++++++..... ..|.|+.++|+|+..+++.-..-.|. +|+ ....||......+ .+... . + .
T Consensus 100 ~~la~~L~~~~p~~~~-~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~l-s~~~~~~~~~~~~~~~~~ 177 (451)
T PRK06918 100 IELAEKLAALAPGSFD-KKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTM-TMTSKVKPYKFGFGPFAP 177 (451)
T ss_pred HHHHHHHHHhCCCCCC-CEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhh-hhcCCCccccccCCCCCC
Confidence 5777778787753211 25999999999887666533211243 355 4556776333222 21110 0 1 1
Q ss_pred EEEEEeccC----CCCccC--------HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcC
Q 037063 250 RVSSAEFAW----PNLRIH--------SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKG 312 (588)
Q Consensus 250 ~v~~v~~~~----~~~~i~--------~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g 312 (588)
.+..+|... +.+ +. .+.+++.+.. ....++...|++.-++..-|.+.| +++| ++|+++|
T Consensus 178 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~g 253 (451)
T PRK06918 178 EVYKAPFPYEYRRPEG-LTEEQYDDFMIEEFKNFFIS---EVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHG 253 (451)
T ss_pred CcEEcCCCcccccccc-CchHHHHHHHHHHHHHHHHh---hcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 133333320 011 11 1223333320 011246777777777776787666 4446 8999999
Q ss_pred cEEEEeCCCcC-CCCCCCCCCC--CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccc
Q 037063 313 WHVLLDATALG-SKDMDTLGLS--LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEII 389 (588)
Q Consensus 313 ~~vvvDaa~~~-~~d~~~l~l~--~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~ 389 (588)
+++|+|.++.. +..-..+... ...+| +.++.|.++. ...+|++++++++++.+.+...+
T Consensus 254 illI~DEV~tg~gr~g~~~a~~~~~v~pD--i~t~sK~l~~-G~pig~v~~~~~i~~~~~~~~~~--------------- 315 (451)
T PRK06918 254 ILFVADEIQTGFARTGKYFAIEHFDVVPD--LITVSKSLGA-GVPISGVIGRKEIMDESAPGELG--------------- 315 (451)
T ss_pred CEEEEeccccCcCccCceehhHhcCCCCC--EEeeehhhcC-CCccEEEEEcHHHHhccCCCCcC---------------
Confidence 99999998542 2111111111 12378 4478997763 45689999998887766432221
Q ss_pred ccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCC
Q 037063 390 ELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVM 469 (588)
Q Consensus 390 ~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~ 469 (588)
+|..-..+ ..++..++|+.+.+ +.+.++++.+.+++.++|+++... .+.+.-+
T Consensus 316 -------------~T~~g~~l-~~aaa~a~l~~i~~---~~~~~~~~~~g~~l~~~l~~l~~~-----~~~~~~v----- 368 (451)
T PRK06918 316 -------------GTYAGSPL-GCAAALAVLDIIEK---ENLNDRAIELGKVVMNRFEEMKNK-----YNCIGDV----- 368 (451)
T ss_pred -------------cCCCcCHH-HHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHhh-----CCCceee-----
Confidence 01111111 01333456666654 456777888888888888776211 1211111
Q ss_pred CCcccEEEEEeecCCCCCc-C---HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe
Q 037063 470 FDRGPSLAFNVFDWNGTRI-D---PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA 545 (588)
Q Consensus 470 ~~rg~iv~f~~~~~~g~~i-~---~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS 545 (588)
...|.++.+.+........ + ...+.+.+.++||.+.++.. .+ .+||++
T Consensus 369 rg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~---------------------------~~-~~lrl~ 420 (451)
T PRK06918 369 RGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGT---------------------------YG-NVIRVL 420 (451)
T ss_pred ccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCC---------------------------CC-CEEEEE
Confidence 1246666665531111111 1 23455556789999876411 11 289999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 546 LGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 546 lg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
+.+..+.+||+.+++.|.++++..
T Consensus 421 p~l~~t~~~id~~l~~l~~~l~~~ 444 (451)
T PRK06918 421 MPLVITDEQLEEGLTIIEESLQAC 444 (451)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHH
Confidence 988789999999999999999764
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-08 Score=111.88 Aligned_cols=360 Identities=11% Similarity=0.095 Sum_probs=203.4
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+. |.-.+.+.+++.+.+....+..+ . +....+...
T Consensus 48 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~-----------------------~------~~~~~~~~~ 98 (466)
T PRK07036 48 ADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTP-----------------------F------GDMTNAPAA 98 (466)
T ss_pred CCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCccccc-----------------------c------cccCCHHHH
Confidence 368889998655 66677888887666533111100 0 000134445
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-----CCCC-eEE-EcCCCchhHHHHHHHHHHh----c---
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-----YSNP-RLL-TVYDHENEAAALMIESSKK----R--- 247 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-----~~gd-~ll-~~~e~~s~~~~~~~~~a~~----~--- 247 (588)
++-+++.+.+...- ..|.|+.++|+|+..+++... + +++. +|+ ....||...... ...... .
T Consensus 99 ~lae~L~~~~p~~~--~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a-~s~~~~~~~~~~~~ 175 (466)
T PRK07036 99 ELAAKLAELAPGDL--NHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLT-ASLTGKAADRTEFD 175 (466)
T ss_pred HHHHHHHHhCCCCc--CEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhh-hcccCCCccccccc
Confidence 67777777754322 359999999998876665321 1 1223 455 455566533211 111000 0
Q ss_pred --CCEEEEEeccCCC---CccC--------HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHH
Q 037063 248 --GARVSSAEFAWPN---LRIH--------SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAA 309 (588)
Q Consensus 248 --G~~v~~v~~~~~~---~~i~--------~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~ 309 (588)
...+..++..... ..+. .+.+++.|. ....++...|++.-+....|.+.| ++.| ++|+
T Consensus 176 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~ 251 (466)
T PRK07036 176 YASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKIL----SLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICR 251 (466)
T ss_pred CCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHH----HcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHH
Confidence 0123344332100 0111 234555554 112356888889888888899988 7888 9999
Q ss_pred HcCcEEEEeCCCc-CCCC-----CC-CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeee
Q 037063 310 EKGWHVLLDATAL-GSKD-----MD-TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIE 382 (588)
Q Consensus 310 ~~g~~vvvDaa~~-~~~d-----~~-~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~ 382 (588)
++|+++|+|.++. ++.. .. .++ ..||++++ -|.+|.+=.-+|++++++++.+.+.+.... +.
T Consensus 252 ~~g~llI~DEV~tGfGRtG~~~~~~~~~g---v~PDivt~--gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~--~~---- 320 (466)
T PRK07036 252 RYDILYISDEVVTGFGRLGHFFASEAVFG---IQPDIITF--AKGLTSGYQPLGAVIISERLLDVISGPNAK--GN---- 320 (466)
T ss_pred HcCCEEEEeechhCCCcCchhhhhhhhcC---CCCCEEEE--ccccccCccccEEEEEcHHHHHHHhcccCc--Cc----
Confidence 9999999999964 3310 11 223 24898755 796662101279999999987766432100 00
Q ss_pred cCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-
Q 037063 383 PSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV- 461 (588)
Q Consensus 383 ~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v- 461 (588)
.|...+|..-..+ .+++..+.|+.+++ +++.++++.+.++|.+.|..+. . .+.+
T Consensus 321 ---------------~~~~~~T~~gnpl-~~aaa~a~Le~i~~---~~l~~~~~~~g~~l~~~L~~l~-~-----~~~v~ 375 (466)
T PRK07036 321 ---------------VFTHGFTYSGHPV-ACAAALKNIEIMER---EGLCEHVREVGPYFEERLASLR-E-----LPLVG 375 (466)
T ss_pred ---------------ccccCCCCCCCHH-HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhc-c-----CCCEE
Confidence 0001112222221 12444456666654 4677888888888888887752 1 1222
Q ss_pred EEeCCCCCCCcccEEEEEeecCCC--CCcC-----HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCC
Q 037063 462 RIYGPKVMFDRGPSLAFNVFDWNG--TRID-----PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNE 534 (588)
Q Consensus 462 ~i~~p~~~~~rg~iv~f~~~~~~g--~~i~-----~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~ 534 (588)
.+- ..|.++.+.+.+..+ +... ...+.+.+.++||.++..
T Consensus 376 ~vr------G~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~--------------------------- 422 (466)
T PRK07036 376 DVR------GDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPL--------------------------- 422 (466)
T ss_pred EEE------eeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeec---------------------------
Confidence 121 346677777643221 1111 234566677789987531
Q ss_pred CcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh---hccccccc
Q 037063 535 TRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD---FVEKERWR 577 (588)
Q Consensus 535 ~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~---~~~~~~~~ 577 (588)
| ..+|+++.+..|.+||+++++.+.+.|++. ...+..||
T Consensus 423 ---~-~~~~l~Ppl~it~~~id~~~~~l~~al~~~~~~~~~~~~~~ 464 (466)
T PRK07036 423 ---E-HLCVLSPPLIITRAQIDEIVAILRAAIEETADELAAHGLWR 464 (466)
T ss_pred ---C-CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 1 178999999999999999999998877653 22345676
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-09 Score=114.47 Aligned_cols=338 Identities=12% Similarity=0.069 Sum_probs=195.8
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+.-|||..+. |.-++.+.+++.+.+.... .. . . ..+...+
T Consensus 48 dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~--~~---------------------~--~--------~~~~~~~ 94 (426)
T PRK00062 48 DGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGL--SF---------------------G--A--------PTELEVE 94 (426)
T ss_pred CCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhCC--cC---------------------C--C--------CCHHHHH
Confidence 67789998653 4667788888876664311 00 0 0 0234457
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEE-EcCCCchhHHHHHHHHHHh----------cCCEE
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLL-TVYDHENEAAALMIESSKK----------RGARV 251 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll-~~~e~~s~~~~~~~~~a~~----------~G~~v 251 (588)
+.+++++.+. ..+ .|.|+.++++|+..++.... +..+++|+ ....||... .+....... .+...
T Consensus 95 la~~L~~~~~-~~~--~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t-~~~~~~~~~~~~~~~~~~~~~~~~ 170 (426)
T PRK00062 95 LAELVIELVP-SIE--MVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHA-DSLLVKAGSGAATLGLPDSPGVPE 170 (426)
T ss_pred HHHHHHHhCC-CCC--EEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCch-hhhhhccCccccccCCCCCCCCCc
Confidence 8888887763 122 49999999999988877531 22244555 555676522 111111000 01100
Q ss_pred ----EEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCc
Q 037063 252 ----SSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATAL 322 (588)
Q Consensus 252 ----~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~ 322 (588)
..+.+. .-|.+++++.+.. ..+++.+|++..+...+|.+.| +++| ++|+++|+++|+|.++.
T Consensus 171 ~~~~~~~~~~----~~d~~~l~~~i~~-----~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~ 241 (426)
T PRK00062 171 DFAKHTLTAP----YNDLEAVEELFEE-----YGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMT 241 (426)
T ss_pred ccccceEEcC----CCCHHHHHHHHHh-----CCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechh
Confidence 011111 1267888888861 1246888899888888999999 8888 99999999999999975
Q ss_pred CCCCCCCCC---CCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccccccc
Q 037063 323 GSKDMDTLG---LSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQ 399 (588)
Q Consensus 323 ~~~d~~~l~---l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f 399 (588)
.- ...... .-...+|+ .++.|.+|. ...+|++++++++++.+...... .
T Consensus 242 G~-r~g~~~~~~~~~~~pDi--~~~gK~l~~-G~p~ga~~~~~~i~~~~~~~~~~--~---------------------- 293 (426)
T PRK00062 242 GF-RVALGGAQGYYGVTPDL--TTLGKIIGG-GLPVGAFGGRREIMEQLAPLGPV--Y---------------------- 293 (426)
T ss_pred cc-ccCCccHHHHhCCCcch--HhhhhHhhC-CCcceeeeEHHHHHHhhccCCCc--e----------------------
Confidence 21 111111 01123785 567796662 22378888888887766421100 0
Q ss_pred ccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEE
Q 037063 400 SKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFN 479 (588)
Q Consensus 400 ~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~ 479 (588)
...|...... ..++..++|+.+.+ +.+.++++.+.+++++.|.++.... +.. +.+- ..|.++.+.
T Consensus 294 -~~~T~~~~p~-~~aaa~a~L~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~---~~~-~~vr------g~G~~~~i~ 358 (426)
T PRK00062 294 -QAGTLSGNPL-AMAAGLATLKLLKE---PGFYEELEALTKRLAEGLKEAAKKA---GIP-LTVN------RVGSMFGLF 358 (426)
T ss_pred -ecccCcCCHH-HHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHHHHHHHc---CCc-eEEE------EecceEEEE
Confidence 0011111111 12444566766654 3567777777788877777541110 111 1111 246788877
Q ss_pred eecCCCCCc------C---HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC
Q 037063 480 VFDWNGTRI------D---PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT 550 (588)
Q Consensus 480 ~~~~~g~~i------~---~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~ 550 (588)
+.+.....+ + ...+...+.++||.+.+. +.+.++++ ...
T Consensus 359 l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~------------------------------~~~~~~~~--~~~ 406 (426)
T PRK00062 359 FTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPS------------------------------QFEAGFVS--AAH 406 (426)
T ss_pred EecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecC------------------------------CcCceeee--ccC
Confidence 754221100 1 135667777889987542 11256665 577
Q ss_pred CHHHHHHHHHHHHHhhhh
Q 037063 551 NFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 551 t~eDv~~li~~l~~~l~~ 568 (588)
|.+||+++++.|++.+++
T Consensus 407 t~~ei~~~~~~l~~~l~~ 424 (426)
T PRK00062 407 TDEDIEKTLEAARKAFAA 424 (426)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999988764
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-08 Score=111.28 Aligned_cols=355 Identities=13% Similarity=0.062 Sum_probs=200.8
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|..+..|+|..+. |--.+.+.+++.+.+....+..+ .. ....+..
T Consensus 46 D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~~~~-----------------------~~------~~~~~~~ 96 (461)
T PRK07482 46 DAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHT-----------------------YV------GHGTEAS 96 (461)
T ss_pred ECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCcccc-----------------------cc------ccCCHHH
Confidence 3368899998866 56677888888766643111100 00 0013445
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-----CCCC-eEE-EcCCCchhHHHHHHHHH------Hhc
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-----YSNP-RLL-TVYDHENEAAALMIESS------KKR 247 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-----~~gd-~ll-~~~e~~s~~~~~~~~~a------~~~ 247 (588)
.++-++|++.+..+- ..|.|+.++|+|+..+++... + .++. +|+ ....||......+ .+. ...
T Consensus 97 ~~lAe~L~~~~p~~~--~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~-s~~~~~~~~~~~ 173 (461)
T PRK07482 97 ITLSKRIIDRAPAGM--SKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTG-SLTGLSLFHQHF 173 (461)
T ss_pred HHHHHHHHHhCCCCc--CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhh-hccCCchhhhcc
Confidence 577777777764322 359999999999887766431 0 1233 365 4556665332211 110 011
Q ss_pred C---CEEEEEeccCC-C----C-------ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HH
Q 037063 248 G---ARVSSAEFAWP-N----L-------RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SV 307 (588)
Q Consensus 248 G---~~v~~v~~~~~-~----~-------~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~ 307 (588)
+ ..+..++.... . + .-+.+.+++.+. +...++...|++.-+....|.+.| ++.| ++
T Consensus 174 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~l 249 (461)
T PRK07482 174 DLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELIL----AEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAV 249 (461)
T ss_pred CCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHH----hcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence 1 11233332100 0 0 013466777774 112246788888878777788865 3346 89
Q ss_pred HHHcCcEEEEeCCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEee
Q 037063 308 AAEKGWHVLLDATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGI 381 (588)
Q Consensus 308 a~~~g~~vvvDaa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~ 381 (588)
|+++|+++|+|.++.. +. -...+| ..||++++ -|.+|.+-.-+|++++++++.+.+....... +.
T Consensus 250 c~~~giLlI~DEV~tGfGRtG~~~a~~~~g---v~PDiv~~--gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~-~~--- 320 (461)
T PRK07482 250 LKKYDILLIADEVVTGFGRLGSMFGSDHYG---IEPDLITV--AKGLTSAYAPLSGSIVGEKVWDVLEQGSDEH-GA--- 320 (461)
T ss_pred HHHhCCEEEEeccccCCCcCcchhhHHhcC---CCCCEEEE--ccccccCccccceeeecHHHHHHHhcccccC-Cc---
Confidence 9999999999998653 21 112233 34999885 6966521013688889988766554211000 00
Q ss_pred ecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE
Q 037063 382 EPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV 461 (588)
Q Consensus 382 ~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v 461 (588)
+.-.+|..-..+ ..++..+.|+.+++ +.+.++.+.+.++|.+.|.++.-. .+.+
T Consensus 321 -----------------~~h~~T~~gnpl-~~Aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l~~~-----~~~v 374 (461)
T PRK07482 321 -----------------IGHGWTYSGHPI-CAAAALANLDILER---ENLVGNAAEVGAYFRARLRAAFGD-----HPLV 374 (461)
T ss_pred -----------------cccCCCCCcCHH-HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHhc-----CCCE
Confidence 001222222222 12444456666655 557788888888888888765211 1222
Q ss_pred -EEeCCCCCCCcccEEEEEeecCC--CCCcC-----HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCC
Q 037063 462 -RIYGPKVMFDRGPSLAFNVFDWN--GTRID-----PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTN 533 (588)
Q Consensus 462 -~i~~p~~~~~rg~iv~f~~~~~~--g~~i~-----~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~ 533 (588)
.+- .+|.++.+.+.... .+..+ ...+...+.++||.++.+.
T Consensus 375 ~~vr------G~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~------------------------- 423 (461)
T PRK07482 375 GEVR------GVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMP------------------------- 423 (461)
T ss_pred EEEe------eceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCC-------------------------
Confidence 221 34667777764311 11111 1345666677899875420
Q ss_pred CCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 534 ETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 534 ~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.+ .+||+.+.+..|.+||+++++.+.+.|+.
T Consensus 424 ---~~-~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 454 (461)
T PRK07482 424 ---HG-DILGFAPPLVLTRAEADEIVAIAKDAVDE 454 (461)
T ss_pred ---CC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 01 28999999999999999999999998875
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-08 Score=111.13 Aligned_cols=350 Identities=12% Similarity=0.083 Sum_probs=203.3
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+. |--.+.+++++.+.+....+.+. .+. ...+...
T Consensus 45 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~------------------------~~~-----~~~~~~~ 95 (460)
T PRK06105 45 DAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHT------------------------FSH-----KSHGPVI 95 (460)
T ss_pred CCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeec------------------------ccc-----cCCHHHH
Confidence 368899998654 45577888888766643111000 000 0134445
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC------CCCCC-eEE-EcCCCchhHHHHHHHHHH------hcC
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP------FYSNP-RLL-TVYDHENEAAALMIESSK------KRG 248 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~------~~~gd-~ll-~~~e~~s~~~~~~~~~a~------~~G 248 (588)
++-++|++++..+- ..|.|+.++++|+..+++... -.++. +|+ ....||......+ .+.. ..|
T Consensus 96 ~lae~L~~~~p~~~--~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~-s~t~~~~~~~~~~ 172 (460)
T PRK06105 96 DLAEKLVAMAPVPM--SKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASA-SLTGLPNNHRSFD 172 (460)
T ss_pred HHHHHHHHhCCCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhhe-eccCCcccccccC
Confidence 77788888774321 259999999999887776521 01233 355 4566665332211 1100 011
Q ss_pred ---CEEEEEeccCCCCc-------------cCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HH
Q 037063 249 ---ARVSSAEFAWPNLR-------------IHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SV 307 (588)
Q Consensus 249 ---~~v~~v~~~~~~~~-------------i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~ 307 (588)
..+..++.. ...+ ...+++++++.. ...++...|++.-+...-|...| ++.+ ++
T Consensus 173 ~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~le~~~~~----~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~l 247 (460)
T PRK06105 173 LPLDRILHTGCP-HYYRFGLPGESEEAFATRLANELEALILA----EGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAV 247 (460)
T ss_pred CCCCCCEEcCCC-cccccccCCCChHHHHHHHHHHHHHHHHH----cCCCceEEEEEccccCCCCCccCCHHHHHHHHHH
Confidence 112233321 0000 013567777641 11246788888888888899988 7788 99
Q ss_pred HHHcCcEEEEeCCCc-CCCC-----CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEee
Q 037063 308 AAEKGWHVLLDATAL-GSKD-----MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGI 381 (588)
Q Consensus 308 a~~~g~~vvvDaa~~-~~~d-----~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~ 381 (588)
|+++|+++|+|.++. ++.. ...++ ..||+++ +-|-+|.+-.-+|++++++++.+.+.+..... +.
T Consensus 248 c~~~~~llI~DEv~tG~GRtG~~f~~~~~~---v~PDi~~--~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~-~~--- 318 (460)
T PRK06105 248 LRKYDILLVADEVICGFGRTGNMFGCETFG---IKPDILV--MSKQLSSSYQPLSAVLMNEKVYDPIADESGKI-GT--- 318 (460)
T ss_pred HHHcCCeEEEeccccCCCcCchhhhHHhcC---CCCCeee--eecccccCcccceEEEEcHHHHHHHhcccccC-cc---
Confidence 999999999999973 3311 12223 3499764 57966521012789999988876654321000 00
Q ss_pred ecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE
Q 037063 382 EPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV 461 (588)
Q Consensus 382 ~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v 461 (588)
|.-.+|.+-..+ ..++..++|+.+++ +.+.++++.+.++|.++|.+| ..+ +.+
T Consensus 319 -----------------~~h~~T~~gnpl-~~aaa~a~L~~i~~---~~l~~~v~~~g~~l~~~L~~l-~~~-----~~v 371 (460)
T PRK06105 319 -----------------FGHGFTASGHPV-AAAVALENLAIIEE---RDLVGNAAERGARLQARLRAL-ADH-----PLV 371 (460)
T ss_pred -----------------cccCCCCCCCHH-HHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHh-hcC-----CCe
Confidence 001122222222 12344466777765 467888899999999999887 221 222
Q ss_pred -EEeCCCCCCCcccEEEEEeecCCC--CCcC-----HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCC
Q 037063 462 -RIYGPKVMFDRGPSLAFNVFDWNG--TRID-----PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTN 533 (588)
Q Consensus 462 -~i~~p~~~~~rg~iv~f~~~~~~g--~~i~-----~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~ 533 (588)
.+- .+|.++.+.+....+ +..+ ...+.+.+.++||.++..
T Consensus 372 ~~vr------G~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~-------------------------- 419 (460)
T PRK06105 372 GEVR------GVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAM-------------------------- 419 (460)
T ss_pred EEEE------ecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEec--------------------------
Confidence 121 346677777643221 1111 134566667889987541
Q ss_pred CCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 534 ETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 534 ~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
. .+||+++.+..|.+||+++++.+.+.|++
T Consensus 420 ---g--~~i~l~Ppl~it~~eid~~~~~l~~~l~~ 449 (460)
T PRK06105 420 ---G--DTLAFCPPLIITAAQVDEMVDRFGRALDD 449 (460)
T ss_pred ---C--CEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 1 18999999989999999999999998865
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.8e-09 Score=113.30 Aligned_cols=343 Identities=12% Similarity=0.088 Sum_probs=193.7
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
++..|+|..+. |.-.+.+.+++.+.+.... . + . . ..+...+
T Consensus 51 dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~---~--------------~------~-~---------~~~~~~~ 97 (433)
T PRK00615 51 LGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGT---S--------------Y------G-L---------TSEQEIL 97 (433)
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCC---C--------------C------C-C---------CCHHHHH
Confidence 67889998654 5567788888766653210 0 0 0 0 0234456
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCe-EE-EcCCCchhHHHH-HHHHHHhcCCE---EEE-Eec
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPR-LL-TVYDHENEAAAL-MIESSKKRGAR---VSS-AEF 256 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~-ll-~~~e~~s~~~~~-~~~~a~~~G~~---v~~-v~~ 256 (588)
+-+++.+.+.... ..|.|+.++|+|+..+++....-.|.. |+ ....||.. ..| +... ...+.. ... ...
T Consensus 98 la~~L~~~~~~~~--~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~-td~~~~~~-~~~~~~~~~~~~~~~~ 173 (433)
T PRK00615 98 FAEELFSYLGLED--HKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGH-ADTLLQGI-SFSETSLDTLTHLVDT 173 (433)
T ss_pred HHHHHHHhCCCCc--CEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCC-CcccCccc-ccCCCCcCcCCCCCCC
Confidence 6777777775321 359999999998887666432223543 55 44456641 111 1011 000100 000 000
Q ss_pred cC--CC----CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHH----HH-HHHHHcCcEEEEeCCCcC--
Q 037063 257 AW--PN----LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYM----WM-SVAAEKGWHVLLDATALG-- 323 (588)
Q Consensus 257 ~~--~~----~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~----~I-~~a~~~g~~vvvDaa~~~-- 323 (588)
.. +. ..-|.+++++.+.+ . .++...|++..+....|.+.|.. .| ++|+++|+++|+|.++..
T Consensus 174 ~~~~~~~~~~~~~d~~~l~~~l~~----~-~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R 248 (433)
T PRK00615 174 DLAHPLTLSLPYNDFQIFQTVMNS----L-GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFR 248 (433)
T ss_pred CCCCCCeEeCCCCCHHHHHHHHHh----c-CCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 00 00 01157888888862 1 14678899998988899999855 78 999999999999999742
Q ss_pred -CC--CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccc
Q 037063 324 -SK--DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS 400 (588)
Q Consensus 324 -~~--d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~ 400 (588)
+. -...++ ..||+++ +-|.+|. ..-+|++++++++++.+.+. + . .|
T Consensus 249 ~G~~ga~~~~g---v~PDi~~--~gK~lgg-G~p~~av~~~~~i~~~~~~~--~---~-------------------~~- 297 (433)
T PRK00615 249 VAQGGAAAIYH---VKPDITV--YGKILGG-GLPAAAVVAHKSIMDHLAPE--G---T-------------------IF- 297 (433)
T ss_pred ccHhHHHHhcC---CCCCeEE--EcccccC-CcceeeeeecHHHHhhhcCC--C---C-------------------cc-
Confidence 10 011223 2489875 6897762 12278999999987766431 1 0 00
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEe
Q 037063 401 KFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNV 480 (588)
Q Consensus 401 e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~ 480 (588)
-.+|.....+ ..++..+.|+.+++ +.+.++++++.++|.++|+++.... |.+ +.... .|.++.+.+
T Consensus 298 ~~~T~~g~p~-~~aa~la~L~~i~~---~~~~~~~~~~g~~l~~~l~~~~~~~---g~~-v~~~r------~G~~~~i~~ 363 (433)
T PRK00615 298 QAGTLSGNPL-AMAAGKASINLCRE---QGFYTQLSTLEQNFLSPIEEMIRSQ---GFP-VSLVR------YGSMFSFFF 363 (433)
T ss_pred cCCCCcccHH-HHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHHHc---CCC-eEEEe------eceEEEEEE
Confidence 1122211111 12455566666654 4467777777777777766541111 233 33321 356777766
Q ss_pred ecCCCCCc------C---HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCC
Q 037063 481 FDWNGTRI------D---PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTN 551 (588)
Q Consensus 481 ~~~~g~~i------~---~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t 551 (588)
.+..-..+ + ...+.+.+.++||.+..+.. + . ..+....|
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----------------------------~--~--~~ls~~ht 411 (433)
T PRK00615 364 NENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPF----------------------------E--A--SFLSSAHS 411 (433)
T ss_pred eCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCccc----------------------------c--c--cceecCCC
Confidence 53210000 1 12456666778988754311 1 1 12335569
Q ss_pred HHHHHHHHHHHHHhhhhhhc
Q 037063 552 FEDTYRLWAFVSRFLDADFV 571 (588)
Q Consensus 552 ~eDv~~li~~l~~~l~~~~~ 571 (588)
.+||+++++++.+++++.|.
T Consensus 412 ~~did~~~~a~~~~~~~~~~ 431 (433)
T PRK00615 412 MENLDYAQNVLIDSLEKVFS 431 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988763
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-08 Score=111.27 Aligned_cols=349 Identities=12% Similarity=0.051 Sum_probs=195.3
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+. |.-.+.+.+++.+.+..-...+. .. . ...+...
T Consensus 47 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~-----------------------~~-~-----~~~~~~~ 97 (456)
T PRK07480 47 SEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNT-----------------------FF-K-----TTHPPAI 97 (456)
T ss_pred CCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccc-----------------------cc-c-----cCCHHHH
Confidence 367889998654 66677888887666643111000 00 0 0134556
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-----CCCC-eEE-EcCCCchhHHHHHH-----HHHHhcCC
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-----YSNP-RLL-TVYDHENEAAALMI-----ESSKKRGA 249 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-----~~gd-~ll-~~~e~~s~~~~~~~-----~~a~~~G~ 249 (588)
++-++|++++...- ..|.|+.++|+|+..+++... + ++|. +|+ ....||......+. ...+..|.
T Consensus 98 ~lae~L~~~~p~~~--~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~ 175 (456)
T PRK07480 98 ELAAKLAEVAPPGF--NHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDL 175 (456)
T ss_pred HHHHHHHHhCCCCc--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCC
Confidence 77888888875322 259999999998877665321 1 1333 355 44556653322111 00000111
Q ss_pred ---EEEEEeccCCCC---ccC--------HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHH
Q 037063 250 ---RVSSAEFAWPNL---RIH--------SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAE 310 (588)
Q Consensus 250 ---~v~~v~~~~~~~---~i~--------~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~ 310 (588)
.+..++...... ..+ .+.+++.+. ....++...|++.-+...-|.+.| ++.| ++|++
T Consensus 176 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~ 251 (456)
T PRK07480 176 PIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKIL----ELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRK 251 (456)
T ss_pred CCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHH----hcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence 122232210000 001 245555553 112256788888888888899888 7778 99999
Q ss_pred cCcEEEEeCCCc-CCC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecC
Q 037063 311 KGWHVLLDATAL-GSK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPS 384 (588)
Q Consensus 311 ~g~~vvvDaa~~-~~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~ 384 (588)
+|+++|+|.++. ++. -...+| ..||+++ +-|-+|.+-.-+|++++++++.+.+.... + .
T Consensus 252 ~g~llI~DEV~tGfGRtG~~~a~~~~g---v~PDiv~--~gK~l~gG~~Pi~av~~~~~i~~~~~~~~-~---~------ 316 (456)
T PRK07480 252 YDILLVADEVICGFGRTGEWFGSQHFG---IKPDLMT--IAKGLTSGYIPMGAVGVGDRVAEVLIEEG-G---E------ 316 (456)
T ss_pred cCCEEEEechhhCCCcCcchhhhhhcC---CCCCeee--eehhhccCCccceEEEEcHHHHHHHhcCC-C---C------
Confidence 999999999964 321 112233 3489765 47966521012799999988876652100 1 0
Q ss_pred CCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHHHcccCCCCCCCCCeE-E
Q 037063 385 FSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRA-RYLINWLANALMNLHHPHSETGIPLV-R 462 (588)
Q Consensus 385 ~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~-~~L~~~l~~~L~~L~h~~~~~g~~~v-~ 462 (588)
|.-.+|..-..+ ..++..++|+.+++ +.+.+++ +.+.++|.+.|+++. . .+.+ .
T Consensus 317 --------------~~~~~T~~gnpl-~~Aaa~a~L~~l~~---~~l~~~~~~~~g~~l~~~l~~l~-~-----~~~i~~ 372 (456)
T PRK07480 317 --------------FNHGFTYSGHPV-AAAVALANLRILRD---EGIVERVRDDTGPYLQKRLRELA-D-----HPLVGE 372 (456)
T ss_pred --------------cccCCCCCcCHH-HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHhh-c-----CCCeee
Confidence 000111111111 12455567777665 3466677 477777777777652 0 1211 1
Q ss_pred EeCCCCCCCcccEEEEEeecCCC--CCc-C----HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCC
Q 037063 463 IYGPKVMFDRGPSLAFNVFDWNG--TRI-D----PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNET 535 (588)
Q Consensus 463 i~~p~~~~~rg~iv~f~~~~~~g--~~i-~----~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~ 535 (588)
+- ..|.++.+.+.+... +.. . ...+...+.++||.+...
T Consensus 373 vr------G~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~---------------------------- 418 (456)
T PRK07480 373 VR------GVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAV---------------------------- 418 (456)
T ss_pred EE------eecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeec----------------------------
Confidence 11 246677777643211 111 1 134555667789987531
Q ss_pred cCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 536 RSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 536 ~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
. ..+|+++.+..|.+||+++++.|.+.|++
T Consensus 419 -~--~~l~~~Ppl~it~~eid~~~~~l~~al~~ 448 (456)
T PRK07480 419 -G--DRMIISPPLVITHAEIDELVEKARKALDA 448 (456)
T ss_pred -C--CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 17999999999999999999999998875
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-08 Score=111.41 Aligned_cols=340 Identities=12% Similarity=0.120 Sum_probs=194.7
Q ss_pred CCeeeecCCC-----CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHH
Q 037063 110 NNYVCFDYIG-----HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKI 184 (588)
Q Consensus 110 ~~~vyLD~a~-----~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~ 184 (588)
.+.-|||.++ .|.-.+.+++++.+.+....... +.. ..+...++
T Consensus 70 dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~--------------------------~~~-----~~~~~~~l 118 (459)
T PRK06082 70 DGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPFSP--------------------------RRF-----TNETAIEC 118 (459)
T ss_pred CCCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCCcc--------------------------Ccc-----CCHHHHHH
Confidence 6788999875 35567788888876664311100 000 13455678
Q ss_pred HHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEE-EcCCCchhHHHHHHHHHHh----c--C---CEEEE
Q 037063 185 RKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLL-TVYDHENEAAALMIESSKK----R--G---ARVSS 253 (588)
Q Consensus 185 r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll-~~~e~~s~~~~~~~~~a~~----~--G---~~v~~ 253 (588)
.+++++++.... ..+.|++++++|+..++.... +....+|+ ....||......+ .+... . + ..+..
T Consensus 119 ae~L~~~~p~~~--~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~-s~~~~~~~~~~~~~~~~~~~~ 195 (459)
T PRK06082 119 AEKLTEIAGGEL--NRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAI-SVGGEACFRQGMGPLMAGVER 195 (459)
T ss_pred HHHHHHhCCCCC--CEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHH-hhcCCcccccCCCCCCCCCEE
Confidence 888888875322 259999999998887665321 22224555 4555665333222 11100 0 0 11233
Q ss_pred EeccCCCCc-----cC------HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEe
Q 037063 254 AEFAWPNLR-----IH------SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLD 318 (588)
Q Consensus 254 v~~~~~~~~-----i~------~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvD 318 (588)
+|.. ...+ .+ .+.+++.|.+ .++...|++.-+.+.-+...| +++| ++|+++|+++|+|
T Consensus 196 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~i~~------~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~D 268 (459)
T PRK06082 196 IPPA-VSYRGAFPDADGSDVHYADYLEYVIEK------EGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIID 268 (459)
T ss_pred eCCC-cccccccCChhHHHHHHHHHHHHHHhc------CCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 3321 0000 11 2446666651 135778888777766444556 6778 9999999999999
Q ss_pred CCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccc
Q 037063 319 ATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELE 392 (588)
Q Consensus 319 aa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~ 392 (588)
.++.. +. -...+++ .||+++ +-|.+|.+-.-+|++++++++........ .
T Consensus 269 EV~tG~GRtG~~fa~e~~gv---~PDiv~--~gKgl~gG~~P~~av~~~~~i~~~~~~~~-~------------------ 324 (459)
T PRK06082 269 EIPNGMGRTGEWFTHQAYGI---EPDILC--IGKGLGGGLVPIAAMITKDKYNTAAQISL-G------------------ 324 (459)
T ss_pred chhhCCCccchhhHhHhhCC---CCCEEE--ecccccCCCCcceEEEEcHHHHhhccCCC-C------------------
Confidence 99653 21 0122333 499887 68966621012688888887643221100 0
Q ss_pred cccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCCCC
Q 037063 393 TLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVMFD 471 (588)
Q Consensus 393 ~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~~~ 471 (588)
. +|..-..+ ..++..+.|+.+.+ +.+.++++.+.++|.++|.++.-. .+.+ .+- .
T Consensus 325 --------~-~T~~gnpl-~~aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~-----~~~i~~vr------G 380 (459)
T PRK06082 325 --------H-YTHEKSPL-GCAAALATIEVIEQ---EGLLEKVKADSQFMRERLLEMKAK-----YPLIGDVR------G 380 (459)
T ss_pred --------C-CCCCcCHH-HHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHhh-----CCCeeeee------e
Confidence 0 11111111 12444466666655 457788888999999988876311 1211 111 3
Q ss_pred cccEEEEEeecCCCCC-cC---HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecC
Q 037063 472 RGPSLAFNVFDWNGTR-ID---PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALG 547 (588)
Q Consensus 472 rg~iv~f~~~~~~g~~-i~---~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg 547 (588)
+|.++.+.+....... -+ ...+...+.++||.++.. +..+||+++.
T Consensus 381 ~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~------------------------------~~~~i~~~Pp 430 (459)
T PRK06082 381 IGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVS------------------------------QGNVIQLSPP 430 (459)
T ss_pred ccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEec------------------------------CCCEEEEeCC
Confidence 4677777775321110 01 234555566789987531 1128999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhh
Q 037063 548 CLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 548 ~~~t~eDv~~li~~l~~~l~~ 568 (588)
+..|.+||+++++.+.+.+.+
T Consensus 431 l~it~~eid~~~~~l~~~l~~ 451 (459)
T PRK06082 431 LIITREELTQALAILEEAIAK 451 (459)
T ss_pred CccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998865
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.3e-10 Score=114.04 Aligned_cols=211 Identities=16% Similarity=0.157 Sum_probs=142.3
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
.+.|-.-+-|-+++++..++++..-+... ..+.| ...+....++.+....
T Consensus 26 ~G~v~~t~lG~s~~~~e~iea~~~~~~~~-------------------v~Le~-----------~l~~g~~~~R~~~~~~ 75 (395)
T COG1921 26 IGTVLMTNLGRSLYSPEAIEAMKEAMRAP-------------------VELET-----------DLKTGKRGARLTELAE 75 (395)
T ss_pred hhhheeccCCCccCCHHHHHHHHHHhccc-------------------ceeee-----------ecccchhhHHHHHHHH
Confidence 34455566788899999999875443211 11100 0112334445554444
Q ss_pred HHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcC-----CCchhHHHHHHHHHHhcCCEEEEEeccCCCCccC
Q 037063 190 DFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVY-----DHENEAAALMIESSKKRGARVSSAEFAWPNLRIH 264 (588)
Q Consensus 190 ~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~-----e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~ 264 (588)
.+.++... +.++.++|.+.|+-++..++ -+ +.+++..+ +++. .+ ...++..|++++.+.- ..+.+
T Consensus 76 ~~~~~~~a-ea~~ivnnn~aAVll~~~al-~~-~~EvVis~g~lV~gg~~-~v---~d~~~~aG~~l~EvG~---tn~t~ 145 (395)
T COG1921 76 LLCGLTGA-EAAAIVNNNAAAVLLTLNAL-AE-GKEVVVSRGELVEGGAF-RV---PDIIRLAGAKLVEVGT---TNRTH 145 (395)
T ss_pred HHhcccch-hheeeECCcHHHHHHHHhhh-cc-CCeEEEEccccccCCCC-Ch---hHHHHHcCCEEEEecc---cCcCC
Confidence 45555422 35888999999998888887 33 55543222 2322 23 4556677999998864 35678
Q ss_pred HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCcc--CCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCC---CCCCc
Q 037063 265 SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGAR--YSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLS---LFKPD 338 (588)
Q Consensus 265 ~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~--~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~---~~~~D 338 (588)
..+++.+|. ++|+++...|.+|. |.. .+++++ ++||++|+++++|+++...++ ...++. ..++|
T Consensus 146 ~~d~~~AIn--------e~ta~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~-~e~~l~~~la~GaD 215 (395)
T COG1921 146 LKDYELAIN--------ENTALLLKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVD-KEPDLREALALGAD 215 (395)
T ss_pred HHHHHHHhc--------cCCeeEEEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCCccccc-cccchhHHHhcCCC
Confidence 899999999 78999888888875 554 466777 999999999999999866533 111221 24499
Q ss_pred EEEeccCccCCCCCCceEEEEEeCcchhcccCCC
Q 037063 339 FLICSFYKIFGENPSGFGCLFVKKSSASVLSGST 372 (588)
Q Consensus 339 ~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~ 372 (588)
.+++|++|+||. |+ .|+++.||+++++++...
T Consensus 216 LV~~SgdKllgG-Pq-aGii~GkKelI~~lq~~~ 247 (395)
T COG1921 216 LVSFSGDKLLGG-PQ-AGIIVGKKELIEKLQSHP 247 (395)
T ss_pred EEEEecchhcCC-Cc-cceEechHHHHHHHHhhh
Confidence 999999999984 77 799999999998886543
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-08 Score=105.32 Aligned_cols=314 Identities=17% Similarity=0.125 Sum_probs=196.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHH----HHHHHHHhCCCCCCC----eEEEcC-CCchhHHHHHHHHHHhcC
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSS----AFKLLAESYPFYSNP----RLLTVY-DHENEAAALMIESSKKRG 248 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~----al~lv~~s~~~~~gd----~ll~~~-e~~s~~~~~~~~~a~~~G 248 (588)
.+++.++.+++.++-|.+ .|.+.+++-+ +=-++++.|--..|+ .+|.+. -|..|-. .|...|
T Consensus 108 l~li~~Lq~~L~~ITG~D----avsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPA-----SAam~G 178 (496)
T COG1003 108 LELIYELQEWLKEITGMD----AVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPA-----SAAMAG 178 (496)
T ss_pred HHHHHHHHHHHHHhcCCc----eeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChh-----hHhhcC
Confidence 678899999999999985 2777766432 122445555323333 244443 3433321 334569
Q ss_pred CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCcc-CCHHHH-HHHHHcCcEEEEeCC---CcC
Q 037063 249 ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGAR-YSYMWM-SVAAEKGWHVLLDAT---ALG 323 (588)
Q Consensus 249 ~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~-~pl~~I-~~a~~~g~~vvvDaa---~~~ 323 (588)
.+|+.|+.+ ++|.+|+++|++++. +++..+.++.+|+ .|.. -++.+| ++.|++|..|..|+| +.+
T Consensus 179 ~~VV~V~~~-~~G~VDlddLk~k~~--------~~~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~v 248 (496)
T COG1003 179 FKVVVVKCD-ENGNVDLDDLRAKAE--------DNLAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLNAIV 248 (496)
T ss_pred ceEEEEecC-CCCCccHHHHHHHhc--------cceeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchhhhh
Confidence 999999999 899999999999998 7899999998876 5665 579999 999999999999999 444
Q ss_pred CC-CCCCCCCCCCCCcEEEeccCccCCC----CCCceEEEEEeCcchhcccCCC-C-CCCceEeeecCCCcccccccccc
Q 037063 324 SK-DMDTLGLSLFKPDFLICSFYKIFGE----NPSGFGCLFVKKSSASVLSGST-S-SVSTIMGIEPSFSEIIELETLDE 396 (588)
Q Consensus 324 ~~-d~~~l~l~~~~~D~vv~S~~K~~G~----~P~G~G~L~v~~~~~~~l~~~~-~-g~~g~v~~~~~~~~~~~~~~~~~ 396 (588)
++ ...++| +|++=.+.||-|.. +..|.|-+-|++.+..-|.... . .+ +... .....+
T Consensus 249 G~~rPGd~G-----~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~-~~y~--------~~~~~~-- 312 (496)
T COG1003 249 GLARPGDMG-----FDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDV-GEYR--------LDYDGK-- 312 (496)
T ss_pred ccccccccc-----cceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCC-cccc--------ccCCCC--
Confidence 42 234555 99999999996532 2346888999988776665321 0 00 0000 000000
Q ss_pred cccccCC-CCCccchhhHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc
Q 037063 397 SSQSKFP-ESSISGVSSKLVECKGLDHADALG---LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR 472 (588)
Q Consensus 397 ~~f~e~G-T~~~~~~~~~~al~~aL~~l~~~G---~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r 472 (588)
- -.| ...+.+- ...+..+.-++..+| +....+...-.++|+..+|+.- .+ + .|.+...-.+
T Consensus 313 --~-s~g~~~a~~Gs--~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~--------y~-~-~y~~~~~~~H 377 (496)
T COG1003 313 --K-SIGVSAAPYGS--ASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGY--------YP-V-PYTGENRVAH 377 (496)
T ss_pred --c-cceeeccccCc--chHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhc--------Cc-c-ccCCCCccee
Confidence 0 011 1111111 134456777777765 7777777778899999999862 11 1 2333211111
Q ss_pred ccEEEEE-eecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCC
Q 037063 473 GPSLAFN-VFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTN 551 (588)
Q Consensus 473 g~iv~f~-~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t 551 (588)
--|+... +....| +...+|.|.|-.+|++--+-.+= +.. .| .+=|=+----+
T Consensus 378 E~ild~r~l~~~~G--v~~~DvAKrLlD~GfHaPT~~FP---------------liV--------~~--tLMIEPTEsEs 430 (496)
T COG1003 378 ECILDARPLKKETG--VRALDVAKRLLDYGFHAPTMYFP---------------LIV--------AG--TLMIEPTESES 430 (496)
T ss_pred EEEeechHhHhhcC--CcHHHHHHHHHhcCCCCCcccCc---------------ccc--------cc--ceeecCCCCCC
Confidence 1233333 222223 77888999888899875443221 000 11 44455555568
Q ss_pred HHHHHHHHHHHHHhhhh
Q 037063 552 FEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 552 ~eDv~~li~~l~~~l~~ 568 (588)
.+++|+|++++.++.++
T Consensus 431 k~eLDrf~dami~I~~E 447 (496)
T COG1003 431 KEELDRFIDAMIAIREE 447 (496)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999987644
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-08 Score=109.94 Aligned_cols=347 Identities=13% Similarity=0.126 Sum_probs=198.4
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
++..|||..+. |--.+.+.+++.+.+..-..... ...+ .+...+
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~~~---------------------~~~~---------~~~~~~ 100 (457)
T PRK05639 51 DGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSMI---------------------GYTH---------SERAIR 100 (457)
T ss_pred CCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhcccccc---------------------CccC---------CHHHHH
Confidence 68889998553 55567788887666532111000 0000 233446
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHH-----hcC-----CEE
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSK-----KRG-----ARV 251 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~-----~~G-----~~v 251 (588)
+-+++++.+.... ..|.|+.++++|+..++..-....|. +|+ ....||...... ..+.. +.+ -.+
T Consensus 101 lae~L~~~~p~~~--~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a-~s~~~~~~~~~~~~~~~~~~~ 177 (457)
T PRK05639 101 VAEKLAEISPIEN--PKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGA-TSVAAFQSSQKRGFSPLMPNV 177 (457)
T ss_pred HHHHHHhhCCCCc--CEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHH-HHHcCCCcccccCCCCCCCCc
Confidence 7777777765321 35999999999888766643222344 455 455677633322 11111 111 124
Q ss_pred EEEeccCCCC-------ccCHH--------HHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHc
Q 037063 252 SSAEFAWPNL-------RIHSG--------KLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEK 311 (588)
Q Consensus 252 ~~v~~~~~~~-------~i~~e--------~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~ 311 (588)
..+|...... .-+.+ .+++.|.. .....++...|++.-+....|.+.| ++.| ++|+++
T Consensus 178 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~--~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~ 255 (457)
T PRK05639 178 VWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFS--HVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEH 255 (457)
T ss_pred eEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHH--hhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc
Confidence 4555431100 00122 24443320 0011356888888888888888876 4457 899999
Q ss_pred CcEEEEeCCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCC
Q 037063 312 GWHVLLDATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSF 385 (588)
Q Consensus 312 g~~vvvDaa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~ 385 (588)
|+++|+|.++.. +. -...+++ .||+++ +-|.+|. ..++|++++++++++...... . ++
T Consensus 256 g~llI~DEv~tG~GrtG~~~a~~~~gv---~PDiv~--~gK~l~g-G~pi~av~~~~~i~~~~~~~~-~--~T------- 319 (457)
T PRK05639 256 GILLVMDEVQTGIGRTGKWFASEWFEV---KPDLII--FGKGVAS-GMGLSGVIGRKELMDLTSGSA-L--LT------- 319 (457)
T ss_pred CCEEEEechhhccCcCchHHHHHhcCC---CCCEEE--echhhcC-CCcceeEEehHHHHhhcCCCc-c--cC-------
Confidence 999999999653 21 1122333 499888 6896652 345899999998876211000 0 00
Q ss_pred CcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEe
Q 037063 386 SEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIY 464 (588)
Q Consensus 386 ~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~ 464 (588)
..|.| .+ .++..++|+.+.+ +.+.++.+.+.++|++.|.++... .+.+ .+-
T Consensus 320 ---------------~~g~p--~~---~aaa~a~l~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~-----~~~~~~Vr 371 (457)
T PRK05639 320 ---------------PAANP--VI---SAAAEATLEIIEE---ENLLKNALKVGEFIKKRLLEMKES-----FEVIGDVR 371 (457)
T ss_pred ---------------CCcCH--HH---HHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHHHHHHh-----CCCEEeec
Confidence 01111 11 2444466666655 556778888888888888875311 1211 111
Q ss_pred CCCCCCCcccEEEEEeecCCCCCc--CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEE
Q 037063 465 GPKVMFDRGPSLAFNVFDWNGTRI--DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVV 542 (588)
Q Consensus 465 ~p~~~~~rg~iv~f~~~~~~g~~i--~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~v 542 (588)
.+|.++.+.+....+..- ....+.+.+.++||.+.... .+..+|
T Consensus 372 ------G~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g----------------------------~~~~~l 417 (457)
T PRK05639 372 ------GKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSYG----------------------------MFGNVI 417 (457)
T ss_pred ------cceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeecC----------------------------CCCCEE
Confidence 346677766643221110 12345566667899885320 111389
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 543 TAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 543 RvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
|+++.+..|.+||+.+++.+.+.++..
T Consensus 418 r~~Ppl~it~~~id~~~~~l~~~l~~~ 444 (457)
T PRK05639 418 RITPPLVITKEIAEKGLEIMERAIKDA 444 (457)
T ss_pred EEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988654
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-08 Score=107.90 Aligned_cols=354 Identities=14% Similarity=0.068 Sum_probs=201.1
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+. |--.+.+++++.+.+....+..+ +| + ...+...
T Consensus 43 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~-------------~~---------------~-~~~~~~~ 93 (459)
T PRK05965 43 ASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATG-------------YF---------------H-FGSEPAI 93 (459)
T ss_pred CCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCccc-------------cc---------------c-cCCHHHH
Confidence 368899998755 45577888888766543111000 00 0 0123445
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--C----CCCC-eEE-EcCCCchhHHHHHHHHH------HhcC
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--F----YSNP-RLL-TVYDHENEAAALMIESS------KKRG 248 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--~----~~gd-~ll-~~~e~~s~~~~~~~~~a------~~~G 248 (588)
++-++|++.+..+. ..|.|+.++++|+..+++... + +++. +|+ ....||......+ .+. +..|
T Consensus 94 ~lae~L~~~~p~~~--~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~-s~t~~~~~~~~~~ 170 (459)
T PRK05965 94 RLAAKLAERAPGSL--NHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGA-GLTALPAFHRGFD 170 (459)
T ss_pred HHHHHHHhhCCCCc--CEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHH-HhcCCchhhcccC
Confidence 67777777763222 359999999999887765421 1 1233 355 5556775322111 110 0111
Q ss_pred ---CEEEEEeccCCCC---ccC--------HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHH
Q 037063 249 ---ARVSSAEFAWPNL---RIH--------SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAA 309 (588)
Q Consensus 249 ---~~v~~v~~~~~~~---~i~--------~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~ 309 (588)
..+..++...... .-+ .+++++.|.+ ...++...|++.-+....|.+.| ++.+ ++|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~----~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~ 246 (459)
T PRK05965 171 LPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAE----LGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACR 246 (459)
T ss_pred CCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHh----cCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHH
Confidence 1123343321110 012 2466777751 12246778888878887888776 3336 8899
Q ss_pred HcCcEEEEeCCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeec
Q 037063 310 EKGWHVLLDATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEP 383 (588)
Q Consensus 310 ~~g~~vvvDaa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~ 383 (588)
++|+++|+|.++.. +. -...++ ..||++++ -|-+|.+-.-+|++++++++.+.+.+..... +.
T Consensus 247 ~~gillI~DEV~tGfGRtG~~~a~~~~g---v~PDiv~~--gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~-~~----- 315 (459)
T PRK05965 247 ELGILFVADEVITGFGRTGPLFACEAEG---VVPDLMTV--AKGLTSGYVPMGAVLMSDHVYQGIADGAGAA-AP----- 315 (459)
T ss_pred HcCCEEEEechhccCccCchhhhHhhcC---CCCCeEEe--chhhccCCcceeEEEEcHHHHHHHhcccccc-cc-----
Confidence 99999999998653 21 122233 34999886 5855521013899999999877654211000 00
Q ss_pred CCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEE
Q 037063 384 SFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRI 463 (588)
Q Consensus 384 ~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i 463 (588)
|.-.+|..-..+ ..++..+.|+.+++ +.+.++.+.+.++|.+.|.++. . .+.+.
T Consensus 316 ---------------~~h~~T~~gnpl-~~Aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~l~~l~-~-----~~~v~- 369 (459)
T PRK05965 316 ---------------VGHGYTYSAHPV-SAAVGLEVLRLYHE---GGLLANGQKAGPRFAAGLDALR-A-----HPLVG- 369 (459)
T ss_pred ---------------ccccCCCCCCHH-HHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhc-c-----CCCEE-
Confidence 001112221111 12344456666655 5677888999999999998862 1 12221
Q ss_pred eCCCCCCCcccEEEEEeecCCC--CCcC-----HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCc
Q 037063 464 YGPKVMFDRGPSLAFNVFDWNG--TRID-----PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETR 536 (588)
Q Consensus 464 ~~p~~~~~rg~iv~f~~~~~~g--~~i~-----~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~ 536 (588)
. -..+|.++.+.+..... ...+ ...+...+.++||.++..
T Consensus 370 --~--vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~----------------------------- 416 (459)
T PRK05965 370 --D--VRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAF----------------------------- 416 (459)
T ss_pred --E--EeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEec-----------------------------
Confidence 1 01346677777643211 1111 234566667889988631
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 537 SGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 537 ~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
|..+||+.+.+..|.+||+++++.+.+.|++.
T Consensus 417 -g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~ 448 (459)
T PRK05965 417 -GDGVLGFAPALCCTEGEFDLIFERTRKTLDDV 448 (459)
T ss_pred -CCcEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 11279999999999999999999999988763
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.8e-08 Score=116.57 Aligned_cols=308 Identities=13% Similarity=0.071 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHH----hcCC---
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSK----KRGA--- 249 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~----~~G~--- 249 (588)
+...++.+++++++.-.. +.+.|++++++|+..+++....-.|. +|+ ....||......+ .+.. ..+.
T Consensus 624 ~~~~elae~L~~~~p~~~--~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~-~~s~~~~~~~~~~~~ 700 (972)
T PRK06149 624 AAVAEFSERLAALAPDGL--DTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATD-AVSTSIADNPQALET 700 (972)
T ss_pred HHHHHHHHHHHHhCCCCc--CEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHh-hhcCCccccccccCC
Confidence 445577788888873211 35999999999988777621111233 344 5666775332221 1100 0000
Q ss_pred ---EEEEEeccCCCCc--c---C-----HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHc
Q 037063 250 ---RVSSAEFAWPNLR--I---H-----SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEK 311 (588)
Q Consensus 250 ---~v~~v~~~~~~~~--i---~-----~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~ 311 (588)
-+..++.. ...+ . + .+++++.+... ....++...|++.-+....|.+.| ++.| ++|+++
T Consensus 701 ~~~~v~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~ 777 (972)
T PRK06149 701 RPDWVHPVESP-NTYRGRFRGADSAADYVRDVVAQLEEL--DASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRAR 777 (972)
T ss_pred CCCCeEEeCCC-cccCCcCCCcccHHHHHHHHHHHHHHH--hhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHc
Confidence 12233221 1011 1 1 24455555310 112256788888888888899999 8889 999999
Q ss_pred CcEEEEeCCCc-CCCC------CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCC-CCCCCceEeeec
Q 037063 312 GWHVLLDATAL-GSKD------MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGS-TSSVSTIMGIEP 383 (588)
Q Consensus 312 g~~vvvDaa~~-~~~d------~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~-~~g~~g~v~~~~ 383 (588)
|+++|+|.+|. ++.. .+..|+ .||++ ++-|-+|. ..-+|++++++++++.+... .++ .+
T Consensus 778 g~llI~DEV~tGfGRtG~~~~a~e~~gv---~PDiv--t~gK~lg~-G~Pl~av~~~~~i~~~~~~~~~~~--sT----- 844 (972)
T PRK06149 778 GGVCIADEVQVGYGRLGHYFWGFEQQGV---VPDII--TMAKGMGN-GHPLGAVITRREIAEALEAEGYFF--SS----- 844 (972)
T ss_pred CCEEEEEeehhcCCccCccchhhhhcCC---CCCEE--EecccccC-CeeeEEEEEcHHHHhhhccCCccc--CC-----
Confidence 99999999973 3310 111233 49987 56896663 23489999999887766431 100 00
Q ss_pred CCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEE
Q 037063 384 SFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRI 463 (588)
Q Consensus 384 ~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i 463 (588)
..| |..+ .++..+.|+.+++ +++.++.+.+.++|+++|.++.-. .+.+..
T Consensus 845 -----------------~~g--nP~~---~aaala~L~~i~~---e~l~~~~~~~G~~l~~~L~~l~~~-----~~~i~~ 894 (972)
T PRK06149 845 -----------------TGG--SPVS---CRIGMAVLDVLRE---EKLQENARRVGDHLKARLEALADR-----HPLIGA 894 (972)
T ss_pred -----------------CCC--CHHH---HHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHh-----CCCeEE
Confidence 011 1111 2344456666655 567888888888888888876211 122221
Q ss_pred eCCCCCCCcccEEEEEeecCCCC--Cc--CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCc
Q 037063 464 YGPKVMFDRGPSLAFNVFDWNGT--RI--DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGV 539 (588)
Q Consensus 464 ~~p~~~~~rg~iv~f~~~~~~g~--~i--~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ 539 (588)
+ ..+|.++.+.+...... .. ....+.+.+.++||.+.+.. ...
T Consensus 895 v-----rG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g----------------------------~~~ 941 (972)
T PRK06149 895 V-----HGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTG----------------------------DHL 941 (972)
T ss_pred E-----eecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecC----------------------------CCC
Confidence 1 13567777776421111 10 12345666677899886420 111
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 540 SVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 540 ~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.+||+.+.+..|.+||+.+++.|.+.|++
T Consensus 942 ~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 942 NILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 28999999999999999999999998865
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-08 Score=107.72 Aligned_cols=352 Identities=13% Similarity=0.063 Sum_probs=201.1
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+. |--.+.+.+++.+.+....+... ... ..+...
T Consensus 51 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~---------------------~~~---------~~~~~~ 100 (453)
T PRK06943 51 RDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAML---------------------AGC---------THEPAI 100 (453)
T ss_pred CCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccc---------------------ccc---------CCHHHH
Confidence 368889998644 77788888888776643111100 000 123445
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhC------CCCCCC-eEE-EcCCCchhHHHHHHHHHH----hc--C
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY------PFYSNP-RLL-TVYDHENEAAALMIESSK----KR--G 248 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~------~~~~gd-~ll-~~~e~~s~~~~~~~~~a~----~~--G 248 (588)
++-+++++.++..- ..|.|+.++|+|+..+++.- .-.+|. +|+ ....||....-.+ .+.. +. +
T Consensus 101 ~lAe~L~~~~p~~~--~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gal-s~~~~~~~~~~~~ 177 (453)
T PRK06943 101 ELAERLAALTGGTL--GHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGAL-GVTDVALFKDAYD 177 (453)
T ss_pred HHHHHHHHhCCCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhh-cccCChhhhcccc
Confidence 67777777765322 25999999999887766642 011233 455 5556775332211 1100 00 0
Q ss_pred ---CEEEEEeccCCCCc-----------cCHHHHHHHHhhhccccCCCcceEEEEeC-CCCCCCccCC----HHHH-HHH
Q 037063 249 ---ARVSSAEFAWPNLR-----------IHSGKLMKKIVGKRKKKKKKKRGLFVFPL-QSKVTGARYS----YMWM-SVA 308 (588)
Q Consensus 249 ---~~v~~v~~~~~~~~-----------i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~-~sn~tG~~~p----l~~I-~~a 308 (588)
..+..++.....+. -+.+++++.|.. ..++...|++.- +....|.+.| ++.+ ++|
T Consensus 178 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc 252 (453)
T PRK06943 178 PLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAE-----RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALC 252 (453)
T ss_pred cCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHh-----CCCceEEEEEeccccccCCcccCCHHHHHHHHHHH
Confidence 11333433211000 123566767751 124677788876 4677788765 3346 889
Q ss_pred HHcCcEEEEeCCCcC-CCC-----CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeee
Q 037063 309 AEKGWHVLLDATALG-SKD-----MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIE 382 (588)
Q Consensus 309 ~~~g~~vvvDaa~~~-~~d-----~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~ 382 (588)
+++|+++|+|.++.. +.. .+.+++ .||++++ -|-+|.+=.-+|++++++++.+.+...... +
T Consensus 253 ~~~gillI~DEV~TG~GRtG~~fa~~~~gv---~PDivt~--gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~--~----- 320 (453)
T PRK06943 253 DRYGVHLIADEIAVGCGRTGTFFACEQAGV---WPDFLCL--SKGISGGYLPLSLVLSRDAIFAAFYDDDVT--R----- 320 (453)
T ss_pred HHcCCEEEeechhhCCCCCcchhHHHhCCC---CCCeEee--ehhhccCcccceEEEEcHHHHHhhcccCcc--C-----
Confidence 999999999998643 310 122333 4999887 685542101379999999887665421100 0
Q ss_pred cCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEE
Q 037063 383 PSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVR 462 (588)
Q Consensus 383 ~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~ 462 (588)
.|.-.+|..-..+ ..++..+.|+.+++ +.+.++++.+.++|.+.|.++.- .+.+.
T Consensus 321 ---------------~~~~~~T~~gnpl-~~aaa~a~L~~i~~---~~l~~~~~~~G~~l~~~L~~l~~------~~~v~ 375 (453)
T PRK06943 321 ---------------GFLHSHSYTGNPL-ACRAALATLDLFAE---DDVLARNARKSARLRAALAPLAA------HPQVR 375 (453)
T ss_pred ---------------CccCCCCCCCCHH-HHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHhc------CCCEE
Confidence 0001122221111 12444566666665 45677888888888888887621 12222
Q ss_pred EeCCCCCCCcccEEEEEeecCCCCCc-CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccE
Q 037063 463 IYGPKVMFDRGPSLAFNVFDWNGTRI-DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSV 541 (588)
Q Consensus 463 i~~p~~~~~rg~iv~f~~~~~~g~~i-~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~ 541 (588)
-+ ..+|.++.+.+........ -...+.+.+.++||.++.. | ..
T Consensus 376 ~v-----rG~Gl~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~~------------------------------g-~~ 419 (453)
T PRK06943 376 HL-----RQRGTIFAFDVALDGDAARTFSRRFFEAALERELLLRPI------------------------------G-TT 419 (453)
T ss_pred eE-----eccccEEEEEEccCCCcchHHHHHHHHHHHHCCcEEEec------------------------------C-CE
Confidence 10 1356777777752110000 0234566677789987531 1 17
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhhhhhhc
Q 037063 542 VTAALGCLTNFEDTYRLWAFVSRFLDADFV 571 (588)
Q Consensus 542 vRvSlg~~~t~eDv~~li~~l~~~l~~~~~ 571 (588)
+|+++.+..|.+||+++++.|.+.|++.+-
T Consensus 420 l~~~Ppl~it~~eid~~~~~l~~al~~~~~ 449 (453)
T PRK06943 420 VYLMPPYVLDDDEIAWLAERTRATLDATLA 449 (453)
T ss_pred EEEeCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987543
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-08 Score=106.96 Aligned_cols=344 Identities=14% Similarity=0.104 Sum_probs=195.3
Q ss_pred CCCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
.++.-|||..+ .|--.+.+.+++.+.+..-..... +....+...
T Consensus 37 ~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~------------------------------~~~~~~~~~ 86 (422)
T PRK05630 37 EDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMF------------------------------GGLTHEPAI 86 (422)
T ss_pred CCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCccc------------------------------CCcCCHHHH
Confidence 36889999764 366677888887666643111000 000133445
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-----CCCC-eEE-EcCCCchhHHHHHHHHHHh-------c
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-----YSNP-RLL-TVYDHENEAAALMIESSKK-------R 247 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-----~~gd-~ll-~~~e~~s~~~~~~~~~a~~-------~ 247 (588)
++.+++++.+...- ..|.|+.++|+|+..++..-. + +++. +|+ ....||......+ .+... .
T Consensus 87 ~lae~L~~~~p~~~--~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~al-s~~~~~~~~~~~~ 163 (422)
T PRK05630 87 KLTRKLLNLTDNGL--DHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAM-SVCDPEGGMHSLW 163 (422)
T ss_pred HHHHHHHhhCCCCc--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHh-ccCCCcccccccc
Confidence 77777777764221 259999999998776655321 1 1233 455 5566775332221 11000 0
Q ss_pred C---CEEEEEeccCCCCccCH-------HHHHHHHhhhccccCCCcceEEEEeCC-CCCCCccCC----HHHH-HHHHHc
Q 037063 248 G---ARVSSAEFAWPNLRIHS-------GKLMKKIVGKRKKKKKKKRGLFVFPLQ-SKVTGARYS----YMWM-SVAAEK 311 (588)
Q Consensus 248 G---~~v~~v~~~~~~~~i~~-------e~l~~~i~~~~~~~~~~~t~Lv~~~~~-sn~tG~~~p----l~~I-~~a~~~ 311 (588)
+ ..+..+|.. .....+. +.+++.+. +++..|++.-+ ....|.+.| ++.| ++|+++
T Consensus 164 ~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~--------~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~ 234 (422)
T PRK05630 164 KGTLPEQIFAPAP-PVRGSSPQEISEYLRSLELLID--------ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKH 234 (422)
T ss_pred cccCCCCeEcCCC-cccCCChHHHHHHHHHHHHHHh--------hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc
Confidence 0 122334332 1111122 23333343 46777877764 666787665 3446 899999
Q ss_pred CcEEEEeCCCcC-CCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcc
Q 037063 312 GWHVLLDATALG-SKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEI 388 (588)
Q Consensus 312 g~~vvvDaa~~~-~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~ 388 (588)
|+++|+|.++.. +.. +-........||++ .+-|.+|.+-.-+|++++++++.+.+...... +.
T Consensus 235 g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~--t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~--~~---------- 300 (422)
T PRK05630 235 DILLIADEIATGFGRTGELFATLAAGVTPDIM--CVGKALTGGFMSFAATLCTDKVAQLISTPNGG--GA---------- 300 (422)
T ss_pred CCEEEEecceeCCCcCchhhHHHhcCCCCCee--eeechhhcCccccceeeccHHHHHHHhccCCC--Cc----------
Confidence 999999999743 210 10001112348988 55896641101268888898887766422100 00
Q ss_pred cccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCC
Q 037063 389 IELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKV 468 (588)
Q Consensus 389 ~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~ 468 (588)
|.-.+|..-..+ ..++..++|+.+++ +.+.+++..+.++|.+.|..+.. .+.+. +
T Consensus 301 ----------~~h~~T~~g~Pl-a~aaa~aaL~~l~~---~~~~~~~~~~g~~l~~~L~~l~~------~~~v~---~-- 355 (422)
T PRK05630 301 ----------LMHGPTFMANPL-ACAVAHASLEIIET---GMWRKQVKRIEAELIAGLSPLAH------LPGVA---D-- 355 (422)
T ss_pred ----------cccCCCCcCCHH-HHHHHHHHHHHHHh---CcHHHHHHHHHHHHHHHHHHhhc------CCCee---e--
Confidence 000112221111 12445567777765 34566888888888888876521 12221 1
Q ss_pred CCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCC
Q 037063 469 MFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGC 548 (588)
Q Consensus 469 ~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~ 548 (588)
-..+|.++.+.+.+. .....+...+.++||.++.. | .+||+.+.+
T Consensus 356 vRg~Gl~~~ie~~~~----~~~~~~~~~~~~~Gl~~~~~------------------------------g-~~l~~~PpL 400 (422)
T PRK05630 356 VRVLGAIGVVEMEQP----VDMEEATQAAVDHGVWLRPF------------------------------G-RLVYVMPPY 400 (422)
T ss_pred eeccccEEEEEECCc----ccHHHHHHHHHHCCeEEEec------------------------------C-CEEEEECCc
Confidence 013578888888642 22456777777899987531 1 289999999
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 037063 549 LTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 549 ~~t~eDv~~li~~l~~~l~~ 568 (588)
..|.+||+++++.|.+.|++
T Consensus 401 ~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 401 ITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred cCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999998865
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.9e-08 Score=106.09 Aligned_cols=348 Identities=12% Similarity=0.134 Sum_probs=190.0
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+.-|||..+. |--.+.+++++.+.+.......+ .. ...+...
T Consensus 36 ~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~---------------------~~---------~~~~~~~ 85 (442)
T TIGR00709 36 VEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHT---------------------LD---------LTTPLKD 85 (442)
T ss_pred CCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccc---------------------cc---------cCcHHHH
Confidence 367889998654 66778888888766632111000 00 0134455
Q ss_pred HHHHHHHHHhCCCCCCceEEE-ecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHH----hcC-----CE
Q 037063 183 KIRKRIMDFMNISEDDYTLVF-TANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSK----KRG-----AR 250 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvf-t~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~----~~G-----~~ 250 (588)
++-+++++++.-......++| ++++++|+..+++....-.|. +|+ ....||...... ..+.. +.+ ..
T Consensus 86 ~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~-~s~t~~~~~~~~~~~~~~~ 164 (442)
T TIGR00709 86 AFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGA-LAVTGNLFAKNAVGMLMPG 164 (442)
T ss_pred HHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHH-HhhcCChhhhccCCCCCCC
Confidence 677777777642111123555 589999887766532111343 455 566677633322 22211 111 11
Q ss_pred EEEEeccCCCCcc--------CHH----HHHHHHhhhccccCCCcceEEEEeCCCCCCCccC-CH---HHH-HHHHHcCc
Q 037063 251 VSSAEFAWPNLRI--------HSG----KLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARY-SY---MWM-SVAAEKGW 313 (588)
Q Consensus 251 v~~v~~~~~~~~i--------~~e----~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~-pl---~~I-~~a~~~g~ 313 (588)
+..++.. ...+. +.+ .+++.+.. ......++..|++.-+.+..|... |- ++| ++|+++|+
T Consensus 165 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~ 241 (442)
T TIGR00709 165 VQFMPYP-HEYRCPFGIGGEAGSNASIEYFENFIED--VESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDI 241 (442)
T ss_pred cEEeCCC-ccccccccCCchhHHHHHHHHHHHHHHh--hccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 3333332 11111 111 13333320 001113456666666666667765 43 336 88999999
Q ss_pred EEEEeCCCcC-CCC-----CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCc
Q 037063 314 HVLLDATALG-SKD-----MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSE 387 (588)
Q Consensus 314 ~vvvDaa~~~-~~d-----~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~ 387 (588)
++|+|.++.. +.. ...++ ..||+++ +.|.+|. ..-+|+++++++ ++.+.+...+
T Consensus 242 llI~DEV~tGfGRtG~~~a~~~~g---v~PDiv~--~gK~l~~-G~Pigav~~~~~-~~~~~~~~~~------------- 301 (442)
T TIGR00709 242 KLILDEVQAGFGRSGTMFAFEHAG---IEPDFVV--MSKAVGG-GLPLAVLLIAPE-FDAWQPAGHT------------- 301 (442)
T ss_pred EEEEeccccCCCCCCchhHHHHcC---CCCcEEE--EcccccC-CcccEEEEEchH-HhccCCCcCC-------------
Confidence 9999998653 210 11223 3489888 6896653 234899999887 4433221111
Q ss_pred ccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCC
Q 037063 388 IIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGP 466 (588)
Q Consensus 388 ~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p 466 (588)
+|..-..+ ..++..++|+.+++ +.+.++.+.+.++|.+.|.++... .+.+ .+
T Consensus 302 ---------------~T~~gnpl-a~aaa~a~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~-----~~~v~~v--- 354 (442)
T TIGR00709 302 ---------------GTFRGNQL-AMVTGTEALNYWKD---DNLAQNAQERGERITSFLDDMIKE-----HPCIGNV--- 354 (442)
T ss_pred ---------------CCCCcCHH-HHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHh-----CCCeeee---
Confidence 11111111 12444566666655 456778888888888888876211 1211 11
Q ss_pred CCCCCcccEEEEEeecCCCC-----Cc--C---HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCc
Q 037063 467 KVMFDRGPSLAFNVFDWNGT-----RI--D---PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETR 536 (588)
Q Consensus 467 ~~~~~rg~iv~f~~~~~~g~-----~i--~---~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~ 536 (588)
..+|.++.+.+.+.... .. + ...+...+.++||.++...
T Consensus 355 ---rG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~---------------------------- 403 (442)
T TIGR00709 355 ---RGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGG---------------------------- 403 (442)
T ss_pred ---eccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecC----------------------------
Confidence 13567777776432110 00 0 2345566667899876421
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 537 SGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 537 ~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.+..+||+.+.+..|.+||+.+++.+.+.|++
T Consensus 404 ~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~ 435 (442)
T TIGR00709 404 REGEVFRLLCPITIDQEECEEGISRFKQAVEE 435 (442)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 11128999999999999999999999998875
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.4e-08 Score=107.22 Aligned_cols=356 Identities=12% Similarity=0.048 Sum_probs=198.3
Q ss_pred CCCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+ .|--.+.+.+++.+.+....+.++ ... ..+...
T Consensus 27 ~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~---------------------~~~---------~~~~~~ 76 (443)
T PRK07483 27 ATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHT---------------------SFF---------TTEPAE 76 (443)
T ss_pred CCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCccc---------------------ccc---------CCHHHH
Confidence 36888999865 466677888888766643111111 000 123445
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-----CCCC-eEE-EcCCCchhHHHHHHHHHH------hcC
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-----YSNP-RLL-TVYDHENEAAALMIESSK------KRG 248 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-----~~gd-~ll-~~~e~~s~~~~~~~~~a~------~~G 248 (588)
++.++|++++.-.. ..|.|+.++++|+..+++... + +++. +|+ ....||......+ .+.. ..+
T Consensus 77 ~lae~L~~~~p~~~--~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~-s~s~~~~~~~~~~ 153 (443)
T PRK07483 77 ALADRLVAAAPAGL--EHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGAL-AIGGNAWRREPFA 153 (443)
T ss_pred HHHHHHHHhCCCCC--CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHh-hhcCCcccccccC
Confidence 67777777764221 259999999998876665321 1 1343 365 4566776332221 1110 001
Q ss_pred ---CEEEEEeccCCCCcc------------CHHHHHHHHhhhccccCCCcceEEEEeCCCC-CCCccCC----HHHH-HH
Q 037063 249 ---ARVSSAEFAWPNLRI------------HSGKLMKKIVGKRKKKKKKKRGLFVFPLQSK-VTGARYS----YMWM-SV 307 (588)
Q Consensus 249 ---~~v~~v~~~~~~~~i------------~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn-~tG~~~p----l~~I-~~ 307 (588)
..+..++........ ..+++++.+. ....++...|++.-+.- .-|.+.| ++.| ++
T Consensus 154 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~l 229 (443)
T PRK07483 154 PLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKIL----ELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREV 229 (443)
T ss_pred CCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHH----hcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHH
Confidence 112333321110000 1245666554 11224677777777764 3577776 5567 89
Q ss_pred HHHcCcEEEEeCCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEee
Q 037063 308 AAEKGWHVLLDATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGI 381 (588)
Q Consensus 308 a~~~g~~vvvDaa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~ 381 (588)
|+++|+++|+|.++.. +. -...++ ..||++++ -|-+|.+-.-+|++++++++.+.+.+.. + .
T Consensus 230 c~~~gillI~DEV~tGfGRtG~~~a~~~~g---v~PDiv~~--gK~l~gG~~Pi~av~~~~~i~~~~~~~~-~---~--- 297 (443)
T PRK07483 230 CDRYGVLLILDEVMCGMGRTGTLFACEEDG---VAPDLVTI--AKGLGAGYQPIGAVLASDRIYDAIADGS-G---F--- 297 (443)
T ss_pred HHHhCCEEEEecceeCcccCcHHHHHhhcC---CCCCeeee--hhhhccCccccEEEEEcHHHHHHHhcCC-C---c---
Confidence 9999999999999653 21 012233 34998776 6855521012899999998876654211 0 0
Q ss_pred ecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE
Q 037063 382 EPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV 461 (588)
Q Consensus 382 ~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v 461 (588)
|...+|..-..+ ..++..+.|+.+++ +.+.++++.+.++|.+.|+++... .+.+
T Consensus 298 -----------------~~h~~T~~gnpl-~~aaa~a~l~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~-----~~~i 351 (443)
T PRK07483 298 -----------------FQHGHTYLGHAT-ACAAALAVQRVIAE---DGLLANVRARGEQLRARLRERLGQ-----HPHV 351 (443)
T ss_pred -----------------cccCCCCCCCHH-HHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHhc-----CCCe
Confidence 001112211111 12444466666655 567888888888888888764211 1212
Q ss_pred -EEeCCCCCCCcccEEEEEeecCCC--CCcC-----HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCC
Q 037063 462 -RIYGPKVMFDRGPSLAFNVFDWNG--TRID-----PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTN 533 (588)
Q Consensus 462 -~i~~p~~~~~rg~iv~f~~~~~~g--~~i~-----~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~ 533 (588)
.+ ..+|.++.+.+.+..+ ...+ ...+.+.+.++||.+.....+. .+
T Consensus 352 ~~v------RG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~----------------~~---- 405 (443)
T PRK07483 352 GDI------RGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTI----------------DG---- 405 (443)
T ss_pred eeE------eecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccc----------------cC----
Confidence 11 1346677777643211 1111 2346666777999886421110 00
Q ss_pred CCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 534 ETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 534 ~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
..-.+||+.+-+..|.+||+.+++.|.+.|++
T Consensus 406 ---~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~ 437 (443)
T PRK07483 406 ---VRGDHVLLAPPFIITAAQIDEIVERLGDAIDA 437 (443)
T ss_pred ---CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 00128999999999999999999999998875
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.2e-08 Score=105.37 Aligned_cols=341 Identities=11% Similarity=0.071 Sum_probs=195.6
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+.-|||..+. |.-.+.+++++.+.+.......+ ... ..+...+
T Consensus 43 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~---------------------~~~---------~~~~~~~ 92 (427)
T TIGR00508 43 DGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMF---------------------GGF---------THKPAIE 92 (427)
T ss_pred CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccc---------------------ccc---------CCHHHHH
Confidence 56789997654 56677888887665532111000 000 1233456
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-----CCCC-eEE-EcCCCchhHHHHHHHHHHh--------c
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-----YSNP-RLL-TVYDHENEAAALMIESSKK--------R 247 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-----~~gd-~ll-~~~e~~s~~~~~~~~~a~~--------~ 247 (588)
+-+++++++...- ..|.|+.++|+|+..+++.-. + .+|. +|+ ....||......+ .+... .
T Consensus 93 la~~l~~~~~~~~--~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~-s~~~~~~~~~~~~~ 169 (427)
T TIGR00508 93 LCQKLVKMTPNAL--DCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAM-SVCDPENSMHSLYK 169 (427)
T ss_pred HHHHHHhhCCCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhh-cccCCccccccccc
Confidence 7777777764321 359999999998877665321 1 1233 354 6667776332221 11000 0
Q ss_pred C--CEEEEEeccCCCC-----ccCHHHHHHHHhhhccccCCCcceEEEEeCC-CCCCCccC----CHHHH-HHHHHcCcE
Q 037063 248 G--ARVSSAEFAWPNL-----RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQ-SKVTGARY----SYMWM-SVAAEKGWH 314 (588)
Q Consensus 248 G--~~v~~v~~~~~~~-----~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~-sn~tG~~~----pl~~I-~~a~~~g~~ 314 (588)
+ ..+..++...... .-+.+++++++.. ..++...|++.-+ +..-|... .++.| ++|+++|++
T Consensus 170 ~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~-----~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~l 244 (427)
T TIGR00508 170 GYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMEL-----HSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDIL 244 (427)
T ss_pred ccCCCCeEcCCCCccccchhHHHHHHHHHHHHHh-----cCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence 0 0111222210000 0134567777751 1245778888875 55556544 35557 899999999
Q ss_pred EEEeCCCcC-CCC-----CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcc
Q 037063 315 VLLDATALG-SKD-----MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEI 388 (588)
Q Consensus 315 vvvDaa~~~-~~d-----~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~ 388 (588)
+|+|.++.. +.. ...++ ..||+++ +-|.++.+-.-++++++++++.+.+.....+ ..
T Consensus 245 lI~DEv~tG~Gr~G~~~~~~~~~---v~pDi~~--~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~--~~---------- 307 (427)
T TIGR00508 245 LIADEIATGFGRTGKLFACEHAG---VVPDILC--VGKALTGGYMTLSATVTTDKVAQTISSGEAG--CF---------- 307 (427)
T ss_pred EEEeccccCCCcCCccchhhhcC---CCCCEEE--echhhhcCcccceEEEEcHHHHHHHhcCCCC--cc----------
Confidence 999999742 210 11223 2489776 6896552111257888888877666432111 00
Q ss_pred cccccccccccccCCC--CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCC
Q 037063 389 IELETLDESSQSKFPE--SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGP 466 (588)
Q Consensus 389 ~~~~~~~~~~f~e~GT--~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p 466 (588)
. -.+| .+..+ .++..++|+.+.+ +.+.++++.+.++|.+.|+++.- .+.+. .
T Consensus 308 ---------~--~~~T~~g~p~~---~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~------~~~i~---~ 361 (427)
T TIGR00508 308 ---------M--HGPTFMGNPLA---CAVAEASLAILLE---GEWQKQVSAIENQLKRELSPLRK------NPVVK---D 361 (427)
T ss_pred ---------c--cCCCCCcCHHH---HHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhc------CCCEE---e
Confidence 0 0111 11112 2455567777765 34578888999999999988621 11111 0
Q ss_pred CCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec
Q 037063 467 KVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL 546 (588)
Q Consensus 467 ~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl 546 (588)
....|.++.+.+.+. .....+.+.+.++||.+... . ..+|+++
T Consensus 362 --vrg~G~~~~i~~~~~----~~~~~~~~~l~~~Gv~~~~~-----------------------------~--~~l~~~p 404 (427)
T TIGR00508 362 --VRVLGAIGVVEMYKP----VNVEELQKKFVEQGVWIRPF-----------------------------G--KLIYVMP 404 (427)
T ss_pred --EeccccEEEEEECCc----cCHHHHHHHHHHCCeEEEec-----------------------------C--CEEEEEC
Confidence 013478888887542 23566777788889987531 1 1799999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhh
Q 037063 547 GCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 547 g~~~t~eDv~~li~~l~~~l~~ 568 (588)
....|.+||+++++.+.+.|++
T Consensus 405 pl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 405 PYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred CCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998754
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-08 Score=108.05 Aligned_cols=336 Identities=13% Similarity=0.075 Sum_probs=190.6
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|+|+.+. |--.+.+.+++.+.+.... . + + . ..+...+
T Consensus 73 DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~---~--------------~------~-~---------~~~~~~~ 119 (453)
T PRK07046 73 DGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGL---T--------------T------M-L---------PSEDAAW 119 (453)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHHHHHhCC---C--------------C------C-C---------CCHHHHH
Confidence 67889997543 4445778888766653211 0 0 0 0 1244456
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHH--------hcCC----
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSK--------KRGA---- 249 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~--------~~G~---- 249 (588)
+-++|.+.++. + .|.|+.++|+|...+++.-..-.|. +|+ ....||......+..... ..|.
T Consensus 120 lAe~l~~~~~~--~--~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~ 195 (453)
T PRK07046 120 VGEELARRFGL--P--YWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDL 195 (453)
T ss_pred HHHHHHHHhCC--C--EEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccc
Confidence 77777777753 2 4999999999887666543222344 465 444566522111111100 0011
Q ss_pred --EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCc
Q 037063 250 --RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATAL 322 (588)
Q Consensus 250 --~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~ 322 (588)
.+..++. -|.+.+++.+.. .+...|++.-+....|.+.| ++.+ ++|+++|+++|+|.++.
T Consensus 196 ~~~~~~~~~------nd~~~l~~~l~~-------~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t 262 (453)
T PRK07046 196 TATTRVVEF------NDLAALEAALAD-------GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT 262 (453)
T ss_pred cCceEeeCC------CCHHHHHHHhCC-------CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc
Confidence 1122221 167888888751 46788888888877888887 5678 99999999999999974
Q ss_pred ----CCCCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCC-CceEeeecCCCccccccccccc
Q 037063 323 ----GSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSV-STIMGIEPSFSEIIELETLDES 397 (588)
Q Consensus 323 ----~~~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~-~g~v~~~~~~~~~~~~~~~~~~ 397 (588)
.+--...+++ .||+++ +-|.+|. ..-+|++.+++++++.+.+..... .+.
T Consensus 263 fr~g~Gg~~~~~gv---~PDi~t--~gK~lgg-G~Pi~av~g~~~i~~~~~~~~~~~~~~~------------------- 317 (453)
T PRK07046 263 ISSGPGGYTRAHGL---EPDFLV--VGKPIAG-GVPCAVYGFSAELAERAQAAKASAPPGH------------------- 317 (453)
T ss_pred CccCCcchhHHhCC---Ccccee--ehhhhcC-CCcceeeeehHHHHHHHhhccccCCCCC-------------------
Confidence 2211122333 489876 5896652 233899999999887664321100 000
Q ss_pred ccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE
Q 037063 398 SQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA 477 (588)
Q Consensus 398 ~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~ 477 (588)
.+ -.||.+-..+ .+++..+.|+.+++ +.+.+++..+.++|.++|.++.-.. +.+ +.+.+ .|.++.
T Consensus 318 ~~-~~~T~~gnpl-~~aa~~a~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~~---~~~-~~v~g------~G~~~~ 382 (453)
T PRK07046 318 SG-IGTTLSANAL-AMAAMRATLAEVMT---EAAYAHMLALAARLAAGLRAVIARH---GLP-WHVTR------VGARVE 382 (453)
T ss_pred ce-eCCCCcccHH-HHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHHhC---CCC-eEEEE------eCcEEE
Confidence 00 2334332222 12344455555544 4567788888888888887642111 122 23333 244555
Q ss_pred EEeecCCC-C------CcCH---HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecC
Q 037063 478 FNVFDWNG-T------RIDP---ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALG 547 (588)
Q Consensus 478 f~~~~~~g-~------~i~~---~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg 547 (588)
+.+.+... . ..+. ..+...+.++||.+... . ..+++|+.
T Consensus 383 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-----------------------------~--~~~~~~p~ 431 (453)
T PRK07046 383 FQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPF-----------------------------H--NMMLVCPA 431 (453)
T ss_pred EEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEecc-----------------------------c--CcEEEeCC
Confidence 54422110 0 0011 23444455689887531 1 15788864
Q ss_pred CCCCHHHHHHHHHHHHHhhhh
Q 037063 548 CLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 548 ~~~t~eDv~~li~~l~~~l~~ 568 (588)
.|.+||+++++.+.+.++.
T Consensus 432 --~t~~did~~~~~~~~~l~~ 450 (453)
T PRK07046 432 --TTAADVDRLVAAFDACLGE 450 (453)
T ss_pred --CCHHHHHHHHHHHHHHHHH
Confidence 7999999999999988764
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-08 Score=108.49 Aligned_cols=353 Identities=14% Similarity=0.118 Sum_probs=197.9
Q ss_pred CCCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+ .|--.+.+.+++.+.+....+..+ .. ....+...
T Consensus 39 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~-----------------------~~------~~~~~~~~ 89 (449)
T PRK07481 39 IDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYST-----------------------FD------GTTHPRAI 89 (449)
T ss_pred CCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceec-----------------------cc------ccCCHHHH
Confidence 36788999854 355667788887666532111000 00 00134455
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--C----CCCC-eEE-EcCCCchhHHHHHHHHHHh------cC
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--F----YSNP-RLL-TVYDHENEAAALMIESSKK------RG 248 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--~----~~gd-~ll-~~~e~~s~~~~~~~~~a~~------~G 248 (588)
++-++|.++++- ++-..|.|++++|+|+..+++.-. . ++|. +|+ ....||......+ .+... .+
T Consensus 90 ~lae~L~~~~~~-~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~-s~~~~~~~~~~~~ 167 (449)
T PRK07481 90 ELSYELIDMFAP-EGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGA-SVNGNTVFRRNYE 167 (449)
T ss_pred HHHHHHHHhcCC-CCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhh-ccCCCcccccccC
Confidence 777788887742 122359999999998876665321 1 1343 355 5556765332111 11100 00
Q ss_pred ---CEEEEEeccCCC----CccCHHH--------HHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHH
Q 037063 249 ---ARVSSAEFAWPN----LRIHSGK--------LMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVA 308 (588)
Q Consensus 249 ---~~v~~v~~~~~~----~~i~~e~--------l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a 308 (588)
..+..++..... ..-+.++ +++.|. ....++...|++.-+....|.+.| ++.+ ++|
T Consensus 168 ~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~----~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc 243 (449)
T PRK07481 168 PLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIA----FQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVC 243 (449)
T ss_pred CCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHH----hcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHH
Confidence 112233221000 0012333 333333 112256888888888888898877 6668 999
Q ss_pred HHcCcEEEEeCCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeee
Q 037063 309 AEKGWHVLLDATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIE 382 (588)
Q Consensus 309 ~~~g~~vvvDaa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~ 382 (588)
+++|+++|+|.++.. +. -...++ ..||+++. -|.+|.+-.-+|++++++++++.+.+..... +
T Consensus 244 ~~~g~llI~DEV~tGfGRtG~~~a~~~~g---v~PDiv~~--gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~-~----- 312 (449)
T PRK07481 244 DRHGILLIADEVVTGFGRTGSWFGSRGWG---VKPDIMCL--AKGITSGYVPLGATMVNARIADAFEANADFG-G----- 312 (449)
T ss_pred HHcCCEEEEeehhhCcCcCchhhHhhhcC---CCCCEEEE--eecccCCCcCceEEEEcHHHHHHHhccCccc-c-----
Confidence 999999999998653 21 012233 34998776 6866521012799999998877664321100 0
Q ss_pred cCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-
Q 037063 383 PSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV- 461 (588)
Q Consensus 383 ~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v- 461 (588)
.+.-.+|.+-..+ ..++..+.|+.+++ +++.++++.+.++|.+.|.++... .+.+
T Consensus 313 ---------------~~~h~~T~~gnpl-~~aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~-----~~~i~ 368 (449)
T PRK07481 313 ---------------AIMHGYTYSGHPV-ACAAALATLDIVVR---EDLPANAAKRGAYLLEGLQPLKER-----FELVG 368 (449)
T ss_pred ---------------ccccCCCCCCCHH-HHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHhhc-----CCCeE
Confidence 0001223222222 12344455555554 567888888899998888876321 1211
Q ss_pred EEeCCCCCCCcccEEEEEeecCC--CCCcC-----HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCC
Q 037063 462 RIYGPKVMFDRGPSLAFNVFDWN--GTRID-----PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNE 534 (588)
Q Consensus 462 ~i~~p~~~~~rg~iv~f~~~~~~--g~~i~-----~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~ 534 (588)
.+- .+|.++.+.+.... .+..+ ...+...+.++||.++..
T Consensus 369 ~vr------G~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~--------------------------- 415 (449)
T PRK07481 369 DVR------GKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPS--------------------------- 415 (449)
T ss_pred EEe------ecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEec---------------------------
Confidence 111 34667777764321 11111 234556667789987542
Q ss_pred CcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 535 TRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 535 ~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
| ..+|+++.+..|.+||+.+++.+.+.|++
T Consensus 416 ---g-~~i~l~Ppl~it~~eid~~~~~l~~~l~~ 445 (449)
T PRK07481 416 ---G-TKIILSPPLVIQREDVDRIVDALDAGLSA 445 (449)
T ss_pred ---C-CEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1 16899999999999999999999998864
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=6e-08 Score=105.45 Aligned_cols=357 Identities=11% Similarity=0.067 Sum_probs=197.4
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+. |--.+.+.+++.+.+....+..+ +.. ..+...
T Consensus 28 ~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~-------------------------~~~-----~~~~~~ 77 (447)
T PRK06917 28 QNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYR-------------------------SQF-----TSEPAE 77 (447)
T ss_pred CCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccc-------------------------ccc-----CCHHHH
Confidence 367889997644 66678888888766643111100 000 134456
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhC------CCCCCC-eEE-EcCCCchhHHHHHHHHHHhcCC-----
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY------PFYSNP-RLL-TVYDHENEAAALMIESSKKRGA----- 249 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~------~~~~gd-~ll-~~~e~~s~~~~~~~~~a~~~G~----- 249 (588)
++.+++++++... ...+.|+.++|+|+..+++.. .-.+|. +|+ ....||......+ ......+.
T Consensus 78 ~lae~L~~~~p~~--~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~al-s~~~~~~~~~~~~ 154 (447)
T PRK06917 78 KLAKKLSDLSPGD--LNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGAL-SMSGHPLRRQRFV 154 (447)
T ss_pred HHHHHHHHhCCCC--CCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHH-HhcCCccccccCC
Confidence 7888888876432 235999999999887766633 111343 455 4556666333222 21110000
Q ss_pred ----EEEEEeccCCC----Cc-------cCHHHHHHHHhhhccccCCCcceEEEEeCCCC-CCCccCC----HHHH-HHH
Q 037063 250 ----RVSSAEFAWPN----LR-------IHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSK-VTGARYS----YMWM-SVA 308 (588)
Q Consensus 250 ----~v~~v~~~~~~----~~-------i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn-~tG~~~p----l~~I-~~a 308 (588)
.+..++..... +. -+.+.+++.+++ ...++...|++.-+.. .-|.+.| ++.+ ++|
T Consensus 155 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~----~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc 230 (447)
T PRK06917 155 SLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIER----IGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEIC 230 (447)
T ss_pred CCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHh----cCCCceEEEEEeccccCcCceecCCHHHHHHHHHHH
Confidence 11222211000 00 023456666651 1123577777776654 3456665 3346 889
Q ss_pred HHcCcEEEEeCCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeee
Q 037063 309 AEKGWHVLLDATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIE 382 (588)
Q Consensus 309 ~~~g~~vvvDaa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~ 382 (588)
+++|+++|+|.++.. +. -...++ ..||+++ +-|.+|.+-.-+|++.+++++++.+.+.. +.
T Consensus 231 ~~~g~llI~DEv~tGfGRtG~~~a~~~~g---v~PDi~~--~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~----~~---- 297 (447)
T PRK06917 231 DHYDILFIADEVMTGLGRTGAMFAMEHWG---VEPDIMT--LGKGLGAGYTPIAATVVSDRVMEPILRGS----RS---- 297 (447)
T ss_pred HHcCCEEEEechhhCcCcccchhhHHhcC---CCCCEEE--eeehhccCCcceEEEEEcHHHHHHHhccC----cc----
Confidence 999999999998653 21 012233 2489864 57966621002789999988876554211 00
Q ss_pred cCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-
Q 037063 383 PSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV- 461 (588)
Q Consensus 383 ~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v- 461 (588)
.+ -.+|.+-..+ .+++..+.|+.+++ +.+.++++.+.++|.+.|.++... .+.+
T Consensus 298 ---------------~~-~~~T~~gnpl-~~aaa~a~l~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~-----~~~i~ 352 (447)
T PRK06917 298 ---------------IM-SGHTLSANPL-SAATALAVLEYMEK---HNLPEKAAEKGEYLIKGLQKVQQQ-----STIIG 352 (447)
T ss_pred ---------------cc-cccCCCCCHH-HHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHhc-----CCCEE
Confidence 00 1122222221 12444566666654 457788888888888888876311 1212
Q ss_pred EEeCCCCCCCcccEEEEEeecCCC--CCcC-----HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCC
Q 037063 462 RIYGPKVMFDRGPSLAFNVFDWNG--TRID-----PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNE 534 (588)
Q Consensus 462 ~i~~p~~~~~rg~iv~f~~~~~~g--~~i~-----~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~ 534 (588)
.+- .+|.++.+.+..... +... ...+...+.++||.+......- .+
T Consensus 353 ~vr------G~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~----------------~g----- 405 (447)
T PRK06917 353 DVR------GKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQ----------------DG----- 405 (447)
T ss_pred EEe------ecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEeccccc----------------CC-----
Confidence 111 346677776642111 1111 2345566677899886431100 00
Q ss_pred CcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 535 TRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 535 ~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
.+...+|+++.+..|.+||+++++.+.+.|++.
T Consensus 406 --~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 438 (447)
T PRK06917 406 --KEGDAVIIAPPMTITYSELDELLSIFAKSVEEM 438 (447)
T ss_pred --CCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 011389999999999999999999999988764
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-08 Score=109.45 Aligned_cols=215 Identities=13% Similarity=0.124 Sum_probs=129.3
Q ss_pred HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCcC-CC-----CCCCCCCC
Q 037063 265 SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATALG-SK-----DMDTLGLS 333 (588)
Q Consensus 265 ~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~~-~~-----d~~~l~l~ 333 (588)
.+.++++|.+ ...+...|++.-+....|.+.| ++.| ++|+++|+++|+|.++.. +. -.+.+|+.
T Consensus 238 l~~l~~~l~~-----~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~ 312 (464)
T TIGR00699 238 LEEVEDLIKK-----WHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLD 312 (464)
T ss_pred HHHHHHHHHh-----cCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCC
Confidence 4556676651 1245888888888888999998 8888 999999999999999643 21 11223332
Q ss_pred CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhH
Q 037063 334 LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSK 413 (588)
Q Consensus 334 ~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~ 413 (588)
.+||++++ -|.+| |.|+++. ++.+....+.. ..+|..-..+ ..
T Consensus 313 -~~PDi~t~--gK~lg----~gG~~~~-~~~~~~~~~~~----------------------------~~~T~~gnp~-~~ 355 (464)
T TIGR00699 313 -DPPDMVTF--SKKFQ----TAGYFFH-DPAFRPNKPYR----------------------------QFNTWMGDPS-RA 355 (464)
T ss_pred -CCCCEEEe--hhhhc----cCCcccc-chhccCCCCcc----------------------------cccCCCCCHH-HH
Confidence 24898554 78664 1243332 22211000101 1112221111 12
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC-eEEEeCCCCCCCcccEEEEEeecCCCCCcCHHH
Q 037063 414 LVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIP-LVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPAL 492 (588)
Q Consensus 414 ~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~-~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~ 492 (588)
++..+.|+.+.+ +.+.+++..+.++|.+.|.++... .| .|.-+- ...+|.++.+.+.+. -....
T Consensus 356 aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~-----~~~~i~~vR---g~G~Glm~gie~~~~----~~~~~ 420 (464)
T TIGR00699 356 LILREIIQEIKR---KDLLENVAHVGDYLYTGLEDLQKK-----YPEFIQNLR---GKGRGTFIAWDTPDE----AKRDK 420 (464)
T ss_pred HHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHh-----CCCceeeec---ccCeEEEEEEecCCH----HHHHH
Confidence 444456676655 557778888888888888776210 12 121110 003577888876431 01345
Q ss_pred HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 493 VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 493 v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
+.+.+.++||.++.. |...||+++.+..|.+||+.+++.|.+.+
T Consensus 421 i~~~~~~~Gvl~~~~------------------------------g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 421 LLKKARNNGVNIGGC------------------------------GVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred HHHHHHHCCcEEecC------------------------------CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 666677789987531 22389999999999999999999988753
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.1e-08 Score=105.55 Aligned_cols=335 Identities=16% Similarity=0.101 Sum_probs=191.0
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+. |--.+.+.+++.+.+..... + . . ..+...
T Consensus 50 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-----------------~------~-~---------~~~~~~ 96 (428)
T PRK12389 50 VDGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVL-----------------Y------G-T---------PTELEI 96 (428)
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCc-----------------c------C-C---------CCHHHH
Confidence 368899997443 44557788887666532110 0 0 0 023345
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHHh----------cCC-
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSKK----------RGA- 249 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~~----------~G~- 249 (588)
++-+++.+.+.- . ..+.|+.++|+|+..+++.-..-.|. +|+ ....||.... +....... .|.
T Consensus 97 ~la~~l~~~~p~-~--~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~-~~~~~~~~~~~~~~~~~~~~~~ 172 (428)
T PRK12389 97 EFAKMLKEAIPS-L--EKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSD-LVLVAAGSGPSTLGTPDSAGVP 172 (428)
T ss_pred HHHHHHHHhCCC-C--cEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChH-HHHHhcCCcccccCCCCCCCCC
Confidence 666777776541 2 35999999999988776633222344 455 4556776322 21111100 010
Q ss_pred -----EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeC
Q 037063 250 -----RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDA 319 (588)
Q Consensus 250 -----~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDa 319 (588)
.+..++. -|.+.+++.+.+ . .++...|++.-+....|.+.| +++| ++|+++|+++|+|.
T Consensus 173 ~~~~~~~~~~~~------~d~~~l~~~l~~----~-~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DE 241 (428)
T PRK12389 173 KSIAQEVITVPF------NDIEALKEALDK----W-GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDE 241 (428)
T ss_pred CcccCceEEcCC------CCHHHHHHHHHh----c-CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 1112221 157888888862 1 145788888888888999999 8889 99999999999999
Q ss_pred CCcCC-CC----CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 320 TALGS-KD----MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 320 a~~~~-~d----~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
++..- .. ...++ ..||++ ++-|.+|. ..-+|++++++++++.+.+. +. ..
T Consensus 242 V~tG~Rt~~~~a~~~~g---v~PDiv--t~gK~lgg-G~Pi~av~~~~~i~~~~~~~--~~-~~---------------- 296 (428)
T PRK12389 242 VITAFRFMYGGAQDLLG---VEPDLT--ALGKIIGG-GLPIGAYGGRKDIMEQVAPL--GP-AY---------------- 296 (428)
T ss_pred cccccccCcchhhHHhC---CCCCee--eechhhcC-CCceeEEeEHHHHHhhhccC--CC-cc----------------
Confidence 97642 10 11223 248975 56896552 12278889999887766421 10 00
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
-.+|..-..+ ..++..+.|+.+++ +.+.++++.+.++|++.|.++.... +. .+.+.+ .++
T Consensus 297 ------~~~T~~gnpl-~~Aaala~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~---~~-~~~v~r------~~g 356 (428)
T PRK12389 297 ------QAGTMAGNPA-SMAAGIACLEVLQQ---EGVYEKLDRLGAMLEEGILEAAEKH---GI-TITINR------LKG 356 (428)
T ss_pred ------cccCCccCHH-HHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHHhC---CC-CEEEEe------cCc
Confidence 1112221111 12444466666654 4577888888999988888752111 11 122211 123
Q ss_pred EEEEEeecCCCC------CcC---HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe
Q 037063 475 SLAFNVFDWNGT------RID---PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA 545 (588)
Q Consensus 475 iv~f~~~~~~g~------~i~---~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS 545 (588)
++.+.+.+.... ..+ ...+.+.+.++||.+... +.+.+.++
T Consensus 357 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~------------------------------~~~~~~~~ 406 (428)
T PRK12389 357 ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPS------------------------------KYEAWFLT 406 (428)
T ss_pred EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecC------------------------------CCCCeeec
Confidence 555544321110 001 234566677789988642 10133343
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhh
Q 037063 546 LGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 546 lg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+..|.|||+++++.+.+.+++
T Consensus 407 --l~~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 407 --TAHTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred --CCCCHHHHHHHHHHHHHHHHh
Confidence 667999999999999988753
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-08 Score=115.16 Aligned_cols=303 Identities=13% Similarity=0.077 Sum_probs=185.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCC--CCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYS--NPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~--gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
-+.+-+.+..|+++.|.+-.. --+-.++|++-..+..+..... ..+++++...|.....-++..++..|++++.
T Consensus 123 Lqal~e~Qtmi~~LtGm~vaN--ASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-- 198 (954)
T PRK12566 123 LEALLNFQQMTIDLTGLDLAN--ASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-- 198 (954)
T ss_pred HHHHHHHHHHHHHHhCchhhh--hhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE--
Confidence 456668899999999986432 2233355544333332322222 3456655544444555567777888888875
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcC---C-CCCCCC
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALG---S-KDMDTL 330 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~---~-~d~~~l 330 (588)
+++++.++ .++.-|++..+ |..|.+.++++| +++|++|++++ +++..+ - +...++
T Consensus 199 ----------~~~~~~~~--------~~~~~v~vq~P-~~~G~i~d~~~i~~~~h~~gal~~-~~~d~laL~ll~~Pge~ 258 (954)
T PRK12566 199 ----------DAVDNLAA--------HAVFGALLQYP-DTHGEIRDLRPLIDQLHGQQALAC-VAADLLSLLVLTPPGEL 258 (954)
T ss_pred ----------cchhhcCC--------CCEEEEEEECC-CCceEEccHHHHHHHHHHcCCEEE-EEeCHHHHhCCCChhhc
Confidence 23444444 45555666554 679999999999 99999999865 444222 1 123444
Q ss_pred CCCCCCCcEEEeccCcc---CCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcc-ccccccc-ccccccCCCC
Q 037063 331 GLSLFKPDFLICSFYKI---FGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEI-IELETLD-ESSQSKFPES 405 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~---~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~-~~~~~~~-~~~f~e~GT~ 405 (588)
| +|+++.+.+-+ +|++..+.|++.++++....++-...| ........+.+ ..++.|. +-|- |-.|.
T Consensus 259 G-----ADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG---~s~D~~G~~a~~l~LqtREQHIRR-eKAtS 329 (954)
T PRK12566 259 G-----ADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIG---VSRDARGNTALRMALQTREQHIRR-EKANS 329 (954)
T ss_pred C-----CcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccc---eeecCCCCeeeehhhhHHHHHhhh-ccccc
Confidence 5 99998887752 122244689999999887777655544 22111111000 1111111 1022 78899
Q ss_pred CccchhhHHHHHHHHH--HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecC
Q 037063 406 SISGVSSKLVECKGLD--HADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDW 483 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~--~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~ 483 (588)
|+.....+.++.+++- ++-..|+.+|.+++..++.+|.++|.+. ++++.... -=..+.+++ +
T Consensus 330 NICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~----------g~~~~~~~----fF~~~~v~~-~- 393 (954)
T PRK12566 330 NICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAK----------GIKRLNRH----FFDTLTLEV-G- 393 (954)
T ss_pred hhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc----------CCccccCC----ccceEEEEc-c-
Confidence 9887655555555543 2233468899999999999999999884 34443210 001222333 1
Q ss_pred CCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 484 NGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 484 ~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
.....+...+.+.||.+|.- .. ..|.||+.-.+|.+||+.++..+.
T Consensus 394 ----~~~~~~~~~a~~~~~n~r~~----------------------------~~--~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 394 ----GAQAAIIESAEAARINLRIL----------------------------GR--GRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred ----CCHHHHHHHHHHCCCeeEEe----------------------------CC--CeEEEEeCCCCCHHHHHHHHHHhc
Confidence 12566777777789988742 02 279999999999999999999884
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.6e-08 Score=115.35 Aligned_cols=348 Identities=15% Similarity=0.130 Sum_probs=199.0
Q ss_pred CCCeeeecCC----CCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHH
Q 037063 109 LNNYVCFDYI----GHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKI 184 (588)
Q Consensus 109 ~~~~vyLD~a----~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~ 184 (588)
..+.-|||.. ..|--.+.+.+++.+.+.. . +.++ .. ..+...++
T Consensus 621 ~dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~-l--~~~~------------------------~~-----~~~~~~~l 668 (1013)
T PRK06148 621 NRGRAYLDCFNNVCHVGHAHPRVVAAAARQAAR-L--NTNT------------------------RY-----LHDAIVAY 668 (1013)
T ss_pred CCCCEEEEcccChhhcCCCCHHHHHHHHHHHhh-c--CCcC------------------------Cc-----CCHHHHHH
Confidence 3688999985 4455667788887666532 1 1110 00 13445567
Q ss_pred HHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHH----HHHHhcC----CEEEEE
Q 037063 185 RKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMI----ESSKKRG----ARVSSA 254 (588)
Q Consensus 185 r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~----~~a~~~G----~~v~~v 254 (588)
-+++++.+...- ..+.|+.++|+|+.++++.-..-.|. +|+ ....||......+. ..-+..+ ..+..+
T Consensus 669 Ae~L~~~~p~~~--~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~ 746 (1013)
T PRK06148 669 AERLTATLPDGL--TVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVA 746 (1013)
T ss_pred HHHHHHhCCCCc--CEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEc
Confidence 777777764321 35899999999988776643222344 355 55666653322111 0000001 112222
Q ss_pred eccC----CCCccC-------HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEe
Q 037063 255 EFAW----PNLRIH-------SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLD 318 (588)
Q Consensus 255 ~~~~----~~~~i~-------~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvD 318 (588)
+... +-+.-+ .+++++.+.. .....+++..|++.-+...-|.+.| ++.+ ++|+++|+++|+|
T Consensus 747 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~--~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~D 824 (1013)
T PRK06148 747 EVPDSYRGPERWPDAEHGRRFAESVAEQIAA--MAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIAD 824 (1013)
T ss_pred CCCCccccCCCCChhhhHHHHHHHHHHHHHh--hhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEE
Confidence 2110 000001 1345555531 0112246788888888888899888 7778 9999999999999
Q ss_pred CCCcC-CC---C---CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccc
Q 037063 319 ATALG-SK---D---MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIEL 391 (588)
Q Consensus 319 aa~~~-~~---d---~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~ 391 (588)
.+|.. +. . ....| ..||++++ -|.+|. ..-+|++++++++++.+.+....
T Consensus 825 EVqtGfGRtG~~~~a~e~~g---v~PDivt~--gK~lgg-G~Plgav~~~~ei~~~~~~g~~~----------------- 881 (1013)
T PRK06148 825 EVQVGFGRVGSHWWAFETQG---VVPDIVTM--GKPIGN-GHPMGAVVTTREIADSFDNGMEY----------------- 881 (1013)
T ss_pred ecccCCCCCCCcchhhhhcC---CCcceeee--cccccC-CcceEEEEEcHHHHhhccCCCcc-----------------
Confidence 99753 31 0 11233 34998665 796652 23489999999887765431100
Q ss_pred ccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCCC
Q 037063 392 ETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVMF 470 (588)
Q Consensus 392 ~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~~ 470 (588)
.+|..-..+ ..++..+.|+.+++ +.+.++++.+.++|+++|+++.... +.+ .+-
T Consensus 882 ----------~~Tf~gnpl-a~aaa~a~L~~i~~---e~l~~~~~~~G~~l~~~L~~l~~~~-----~~i~~Vr------ 936 (1013)
T PRK06148 882 ----------FNTFGGNPV-SCAIGLAVLDIIED---EDLQRNALEIGNYLLAGLRELQDRF-----DIIGDVR------ 936 (1013)
T ss_pred ----------ccCCCCCHH-HHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHhC-----CCceEEe------
Confidence 011111111 12344455666654 5677888888899988888763211 211 121
Q ss_pred CcccEEEEEeecCCCCCc-C---HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec
Q 037063 471 DRGPSLAFNVFDWNGTRI-D---PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL 546 (588)
Q Consensus 471 ~rg~iv~f~~~~~~g~~i-~---~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl 546 (588)
..|.++.+.+........ + ...+...+.++||.+.... ....+||+.+
T Consensus 937 G~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g----------------------------~~~~vlr~~P 988 (1013)
T PRK06148 937 GMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEG----------------------------PHDNVLKIRP 988 (1013)
T ss_pred eeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccC----------------------------CCCCEEEEeC
Confidence 245677776643211111 1 2345566667899886410 0012899999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhh
Q 037063 547 GCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 547 g~~~t~eDv~~li~~l~~~l~~ 568 (588)
.+..|.+||+++++.|.+.|.+
T Consensus 989 pl~it~~~id~~l~~l~~~l~~ 1010 (1013)
T PRK06148 989 PLIFSRADADHLLEVLDDVLAA 1010 (1013)
T ss_pred CccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998865
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.7e-08 Score=106.65 Aligned_cols=333 Identities=13% Similarity=0.086 Sum_probs=187.4
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+.-|+|+.+. |--.+.+.+++.+.+.... . | .. ..+...+
T Consensus 97 dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~---~--------------~------~~----------~~~~~~~ 143 (474)
T PLN02482 97 DGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGT---S--------------F------GA----------PCLLENV 143 (474)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHHHHhhCC---C--------------C------CC----------CCHHHHH
Confidence 68899998653 4456788888876664211 0 0 00 1234446
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHH----------hcCC--
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSK----------KRGA-- 249 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~----------~~G~-- 249 (588)
+-++|.+.+.. . +.|.|+.++|+|...+++.-..-.|. +|+ ....||. ...++..... ..|.
T Consensus 144 lAe~l~~~~p~-~--~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG-~~~~~~~~~~~~~~~~~~~~~~g~~~ 219 (474)
T PLN02482 144 LAEMVIDAVPS-V--EMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHG-HADSFLVKAGSGVATLGLPDSPGVPK 219 (474)
T ss_pred HHHHHHHhCCC-C--CEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCC-CcchhhhhcCCCccccCCCCCCCCCC
Confidence 66667666632 1 35999999999888766543222344 465 4455665 2222111100 0011
Q ss_pred ----EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHH----HH-HHHHHcCcEEEEeCC
Q 037063 250 ----RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYM----WM-SVAAEKGWHVLLDAT 320 (588)
Q Consensus 250 ----~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~----~I-~~a~~~g~~vvvDaa 320 (588)
.+..++. -|.+++++.|.+ ...+...|++.-+....|.+.|.. .| ++|+++|+++|+|.+
T Consensus 220 ~~~~~~~~~~~------nd~~~l~~~l~~-----~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV 288 (474)
T PLN02482 220 AATSATLTAPY------NDLEAVKKLFEA-----NKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEV 288 (474)
T ss_pred CCCCCeEEecC------CChHHHHHHHHh-----CCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 1111221 167888888862 124678889998988899998844 57 999999999999999
Q ss_pred CcCCCCC------CCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 321 ALGSKDM------DTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 321 ~~~~~d~------~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
+.. ... ..++ ..||++ .+-|.+|. ..-+|++..++++++.+.+. + .
T Consensus 289 ~tG-fR~g~~ga~~~~g---v~PDi~--t~gK~lgg-G~Pigav~g~~ei~~~~~~~--~--~----------------- 340 (474)
T PLN02482 289 MTG-FRIAYGGAQEYFG---ITPDLT--TLGKVIGG-GLPVGAYGGRREIMEMVAPA--G--P----------------- 340 (474)
T ss_pred ccC-eecCcchHhHHhC---CCCCEE--EecchhhC-CCceEEEEEcHHHHHhhccC--C--C-----------------
Confidence 743 111 1123 248975 55896662 12378899999888766421 1 0
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
.+ -.+|.+-..+ .+++..+.|+.+++ +.+.+++..+.++|+++|.++.... |.|.+ + + ..++
T Consensus 341 ---~~-~~~T~~gnpl-~~aAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~~---g~~~~-~-~-----~v~g 402 (474)
T PLN02482 341 ---MY-QAGTLSGNPL-AMTAGIHTLKRLQQ---PGTYEYLDKITKKLIQGILEAGKKA---GHEMC-G-G-----YISG 402 (474)
T ss_pred ---cc-cccCcchhHH-HHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHHHHhc---CCCEE-E-c-----ccce
Confidence 00 1223222221 12334455665544 4577888888888888888763211 12211 1 1 1123
Q ss_pred EEEEEeecCCC-----C-CcC---HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe
Q 037063 475 SLAFNVFDWNG-----T-RID---PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA 545 (588)
Q Consensus 475 iv~f~~~~~~g-----~-~i~---~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS 545 (588)
++.+.+....- . .-+ ...+.+.+.++||.+.+.. .. . + .
T Consensus 403 ~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~----------------------------~~--~-~-~ 450 (474)
T PLN02482 403 MFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQ----------------------------FE--A-G-F 450 (474)
T ss_pred EEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccC----------------------------CC--C-C-c
Confidence 55444432100 0 001 1245556667899875420 00 0 0 1
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhh
Q 037063 546 LGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 546 lg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+.+..|.+|||++++.+.+.+++
T Consensus 451 psl~ht~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 451 TSLAHTEEDIDFTIAAAERVLAR 473 (474)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Confidence 45667999999999999988753
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-07 Score=98.39 Aligned_cols=322 Identities=16% Similarity=0.081 Sum_probs=192.0
Q ss_pred hHHHHHHHHHHHHHhCCCC-------CCceEEEecCHHHHHHHHHHhCC------CCCC----------Ce-EE-EcCCC
Q 037063 178 SELESKIRKRIMDFMNISE-------DDYTLVFTANQSSAFKLLAESYP------FYSN----------PR-LL-TVYDH 232 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~-------~e~~vvft~g~T~al~lv~~s~~------~~~g----------d~-ll-~~~e~ 232 (588)
++++--+-++++++++.+. .+-.-++..+++++.-+++.+-. ++.+ .+ |. ...+.
T Consensus 112 TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqa 191 (511)
T KOG0628|consen 112 TELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQA 191 (511)
T ss_pred HHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcc
Confidence 6777788889988887642 12224444555555433322211 1222 12 33 33444
Q ss_pred chhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHc
Q 037063 233 ENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEK 311 (588)
Q Consensus 233 ~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~ 311 (588)
|+ ++ .+.+.-.|++++.++.+ .+..+..+.|+++|.++ ..+.--+-+|+.+..++.+-..-+++++ .+|+++
T Consensus 192 hs-sv---eka~~i~~VklR~l~td-~n~~mr~~~L~~AIe~D--~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~~ 264 (511)
T KOG0628|consen 192 HS-SV---EKACLIAGVKLRALPTD-ENFGMRGDTLRKAIEED--IARGLIPFFVCATLGTTSSCAFDELEELGPVCREE 264 (511)
T ss_pred cc-hH---HHhHhhcceeEEEeecc-cCcCCCHHHHHHHHHHH--HhCCCccEEEEEeecCccccccccHHHhcchhhhc
Confidence 44 33 44566679999999998 58889999999999853 2222335566677777777777899999 999999
Q ss_pred CcEEEEeCCCcCC----CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcch--h--cccCCCCCCCceEeeec
Q 037063 312 GWHVLLDATALGS----KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSA--S--VLSGSTSSVSTIMGIEP 383 (588)
Q Consensus 312 g~~vvvDaa~~~~----~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~--~--~l~~~~~g~~g~v~~~~ 383 (588)
|++++||||-++. .....+-=....+|-+-+..|||+-. ---+..|++|+... . ...|.+.-...+.+ .
T Consensus 265 glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~v-nfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~-~- 341 (511)
T KOG0628|consen 265 GLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLV-NFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGS-A- 341 (511)
T ss_pred CEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEE-eeeeecceeecCceeeeeeecChHhhcchhhcc-C-
Confidence 9999999984432 11111111122389999999997654 34688999998731 1 11222211000000 0
Q ss_pred CCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHH---HHHHHHHHHHHcccCCCCCCCCCe
Q 037063 384 SFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRAR---YLINWLANALMNLHHPHSETGIPL 460 (588)
Q Consensus 384 ~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~---~L~~~l~~~L~~L~h~~~~~g~~~ 460 (588)
.|+.+++-.-.+|| -++...+ .+..+|.+++++|++ +|++.+.+-+.+ -+.
T Consensus 342 --~Dyrhwqipl~rRf--------------RSLKlWf-v~R~~Gve~lq~~iR~h~~La~~fe~lv~~---------d~~ 395 (511)
T KOG0628|consen 342 --PDYRHWQIPLGRRF--------------RSLKLWF-VLRSYGVENLQNYIREHVRLAKEFETLVRA---------DPR 395 (511)
T ss_pred --CCccccccccccch--------------hhHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHhhc---------CCc
Confidence 01111111111244 1222222 234557777777766 455555555444 367
Q ss_pred EEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCcc
Q 037063 461 VRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVS 540 (588)
Q Consensus 461 v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~ 540 (588)
+++..+. .-+.|.|++.+.+- ++...+.++-....|.+....+ .|.-
T Consensus 396 FE~~~~~----~lgLvcFRlk~~N~--~ne~Ll~~in~~g~i~l~~~~l---------------------------~gk~ 442 (511)
T KOG0628|consen 396 FEIVNKR----ILGLVCFRLKGDNE--INEALLNRLNSSGRIHLVPASL---------------------------HGKF 442 (511)
T ss_pred ceeeccc----ccceeEEeecCCcH--HHHHHHHHHHhcCcEEEEEeee---------------------------cceE
Confidence 8887763 35899999987531 3344455555666777754321 3444
Q ss_pred EEEEecC-CCCCHHHHHHHHHHHHHhhhh
Q 037063 541 VVTAALG-CLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 541 ~vRvSlg-~~~t~eDv~~li~~l~~~l~~ 568 (588)
+||...+ ..++.+||+..|+.|.+..+.
T Consensus 443 vlRf~V~s~~t~~~di~~a~~~I~~~a~~ 471 (511)
T KOG0628|consen 443 VLRFAVCSPLTNESDIDEAWKIIFEAADE 471 (511)
T ss_pred EEEEEecCCCCcHHHHHHHHHHHHHHHHH
Confidence 8999985 778899999999999887665
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-07 Score=103.99 Aligned_cols=350 Identities=12% Similarity=0.118 Sum_probs=194.1
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|..+..|||..+. |--.+.+++++.+.+.......+ ... ..+..
T Consensus 59 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~---------------------~~~---------~~~~~ 108 (464)
T PRK06938 59 DVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHT---------------------LDL---------TTPVK 108 (464)
T ss_pred eCCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhcccc---------------------ccc---------CCHHH
Confidence 3368899997543 66677888888766532110000 000 12333
Q ss_pred HHHHHHHHHHhCCCC-CCceEEEe-cCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHHh------cC---
Q 037063 182 SKIRKRIMDFMNISE-DDYTLVFT-ANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSKK------RG--- 248 (588)
Q Consensus 182 ~~~r~~ia~~lga~~-~e~~vvft-~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~~------~G--- 248 (588)
.++-+++.+.+...- ....++|. +++++|+..+++......|. +|+ ....||......+ .+... .+
T Consensus 109 ~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~al-s~t~~~~~~~~~~~~~ 187 (464)
T PRK06938 109 DQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGAL-SLMGNLGPKKPLGALL 187 (464)
T ss_pred HHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHH-hhcCCccccccCCCCC
Confidence 455556666553211 11247675 68899887766543222344 455 4556776333222 11100 00
Q ss_pred CEEEEEeccCCC----C-------ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcC
Q 037063 249 ARVSSAEFAWPN----L-------RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKG 312 (588)
Q Consensus 249 ~~v~~v~~~~~~----~-------~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g 312 (588)
..+..+++.... + ..+.+.+++.+.+ .....++...|++.-+...-|.+.| ++.+ ++|+++|
T Consensus 188 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~--~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~g 265 (464)
T PRK06938 188 PGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDD--PESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAG 265 (464)
T ss_pred CCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHh--hccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 123455543111 0 0124567777751 0011135778888877777788776 4446 8999999
Q ss_pred cEEEEeCCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCC
Q 037063 313 WHVLLDATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFS 386 (588)
Q Consensus 313 ~~vvvDaa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~ 386 (588)
+++|+|.++.. +. -.+.+|+ .||++++ -|.+|. ..-+|+++.+++. +.+.+...+
T Consensus 266 iLlI~DEV~tGfGRtG~~~a~e~~gv---~PDiv~~--gKglgg-G~PlsAv~~~~~~-~~~~~~~~~------------ 326 (464)
T PRK06938 266 IPLIVDEIQSGFGRTGKMFAFEHAGI---IPDVVVL--SKAIGG-SLPLAVVVYREWL-DTWQPGAHA------------ 326 (464)
T ss_pred CEEEEeccccCCCcCcHHHHHHhcCC---CCCEEEe--eccccC-CCceEEEeehhHh-hccCCCCCC------------
Confidence 99999998653 21 1223343 4999887 585552 2338888888764 433221111
Q ss_pred cccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeC
Q 037063 387 EIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYG 465 (588)
Q Consensus 387 ~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~ 465 (588)
+|..-..+ ..++..+.|+.+++ +++.++++.+.++|.+.|.+|.-. .|.+ .+-
T Consensus 327 ----------------~T~~gnpl-a~Aaa~a~L~~l~~---~~l~~~~~~~G~~l~~~L~~l~~~-----~~~i~~Vr- 380 (464)
T PRK06938 327 ----------------GTFRGNQM-AMAAGSATLRYIKE---HRLAEHAAAMGERLREHLRQLQRD-----YPQLGDVR- 380 (464)
T ss_pred ----------------CCCCcCHH-HHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHh-----CCCeeeee-
Confidence 11111111 12344455665554 567888899999999988876311 1211 111
Q ss_pred CCCCCCcccEEEEEeecCCCC-------CcC---HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCC
Q 037063 466 PKVMFDRGPSLAFNVFDWNGT-------RID---PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNET 535 (588)
Q Consensus 466 p~~~~~rg~iv~f~~~~~~g~-------~i~---~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~ 535 (588)
.+|.++.+.+.+..+. ..+ ...+...+.++||.++.+.
T Consensus 381 -----G~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g--------------------------- 428 (464)
T PRK06938 381 -----GRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGG--------------------------- 428 (464)
T ss_pred -----ccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecC---------------------------
Confidence 3466777766432211 001 1335555667899876420
Q ss_pred cCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 536 RSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 536 ~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
....+||+.+.+..|.+||+.+++.+.+.|..
T Consensus 429 -~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~ 460 (464)
T PRK06938 429 -RHGSVVRFLPPLIITAEQIDEVAEIFAEAVAA 460 (464)
T ss_pred -CCCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 00128999999999999999999999998865
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.3e-08 Score=100.48 Aligned_cols=331 Identities=12% Similarity=0.078 Sum_probs=193.1
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhccc-CcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHS-SAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~-~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
.+.-|.||+.. |--++.|.+++.+.+.. ..++.| ++.+-
T Consensus 51 DGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~~fg~P----------------------------------te~Ei 96 (432)
T COG0001 51 DGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERGLSFGAP----------------------------------TELEV 96 (432)
T ss_pred CCCEeeehhccCcccccCCCCHHHHHHHHHHHHhcCCCCCC----------------------------------CHHHH
Confidence 57889999865 34466788888766643 122222 34444
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEE-EcCCCchhHHHHHHHHHH----------hcC--
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLL-TVYDHENEAAALMIESSK----------KRG-- 248 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll-~~~e~~s~~~~~~~~~a~----------~~G-- 248 (588)
++-+.|.+.+..- + -|-|++++|+|...+++--. +...++|+ ..--||. .+.++.--+. ..|
T Consensus 97 ~~Aell~~~~p~~-e--~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG-~~D~~lv~agsg~~t~g~p~s~Gvp 172 (432)
T COG0001 97 ELAELLIERVPSI-E--KVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHG-HSDSLLVKAGSGAATLGSPSSPGVP 172 (432)
T ss_pred HHHHHHHHhcCcc-c--EEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCC-CccHHHhhcCcCcccCCCCCCCCCC
Confidence 6667788777762 2 39999999999775544221 22334554 5555554 3333221111 011
Q ss_pred ----CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH----H-HHHHHcCcEEEEeC
Q 037063 249 ----ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW----M-SVAAEKGWHVLLDA 319 (588)
Q Consensus 249 ----~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~----I-~~a~~~g~~vvvDa 319 (588)
..+..+|++ |++.+++++.+ ..++...|.+.-+..--|.+.|.++ + ++|+++|+++|.|.
T Consensus 173 ~~~a~~ti~~~yN------D~~al~~~~~~-----~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DE 241 (432)
T COG0001 173 ADVAKHTLVLPYN------DLEALEEAFEE-----YGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDE 241 (432)
T ss_pred hhhhccEEEecCC------CHHHHHHHHHH-----cCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEec
Confidence 123344443 78899999872 1245666777766666899988555 6 89999999999999
Q ss_pred CCcC------CCCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccc
Q 037063 320 TALG------SKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELET 393 (588)
Q Consensus 320 a~~~------~~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~ 393 (588)
+... + -..-+++ .||+. .+-|+.|. ..-+|++-.|++.++.+.|.-.
T Consensus 242 ViTGFR~~~gG-aq~~~gi---~PDlt--tlGKiIGG-GlP~ga~gGr~eiM~~~~p~g~-------------------- 294 (432)
T COG0001 242 VITGFRVALGG-AQGYYGV---EPDLT--TLGKIIGG-GLPIGAFGGRAEIMEQLAPLGP-------------------- 294 (432)
T ss_pred chhhcccCCcc-cccccCc---Ccchh--hhhhhhcC-CcceeeeccHHHHHhhhCCCCC--------------------
Confidence 8332 2 0122332 27764 46697763 3448999999999886554320
Q ss_pred ccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc
Q 037063 394 LDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG 473 (588)
Q Consensus 394 ~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg 473 (588)
.| ..||.+-..+ +++|-.++|+.+.+. +...+|+.++.+.|.+.|.++-... |++ +.+. ..+
T Consensus 295 ----vy-qaGT~sgnpl-amaAG~atl~~l~~~--~~~y~~l~~~~~~L~~gl~~~~~~~---g~~-~~v~------~~g 356 (432)
T COG0001 295 ----VY-QAGTLSGNPL-AMAAGLATLEELMTE--EGVYERLDALGERLAEGLRAAAERH---GIP-LTVN------RVG 356 (432)
T ss_pred ----cc-ccCCCCCcHH-HHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHh---CCC-eEEe------eec
Confidence 23 5666665553 123333444444431 2367778888888877777643222 233 2222 235
Q ss_pred cEEEEEeecCCCCCcCH-----------HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEE
Q 037063 474 PSLAFNVFDWNGTRIDP-----------ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVV 542 (588)
Q Consensus 474 ~iv~f~~~~~~g~~i~~-----------~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~v 542 (588)
+++.+.+.+.. +.+. ..+.+.+.++||.+.++.+ . ..
T Consensus 357 sm~~i~F~~~~--~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~~----------------------------e--a~ 404 (432)
T COG0001 357 SMFGIFFTEEG--VRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQF----------------------------E--AG 404 (432)
T ss_pred ceEEEEecCCC--CCCHHHHHhhchHHHHHHHHHHHhCCcccCCccc----------------------------c--ce
Confidence 56555544311 1111 1233355567887765421 0 22
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 543 TAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 543 RvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
=+| ..+++|||++.++++.++++.
T Consensus 405 flS--~ahte~di~~~~~a~~~~~~~ 428 (432)
T COG0001 405 FLS--TAHTEEDIDRTLEAADEAFKE 428 (432)
T ss_pred eee--cccCHHHHHHHHHHHHHHHHH
Confidence 233 567999999999999887665
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-07 Score=101.83 Aligned_cols=351 Identities=14% Similarity=0.078 Sum_probs=199.2
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+. |.-.+.+.+++.+.+..-.+.+. . . ...+...
T Consensus 44 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~------------------------~-~-----~~~~~~~ 93 (466)
T PRK07030 44 FEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVIL------------------------A-G-----FSHEPVI 93 (466)
T ss_pred CCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccc------------------------c-c-----cCCHHHH
Confidence 368899998644 66677888887666643111110 0 0 0134455
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-----CCCC-eEE-EcCCCchhHHHHHHHHHHh----c--C
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-----YSNP-RLL-TVYDHENEAAALMIESSKK----R--G 248 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-----~~gd-~ll-~~~e~~s~~~~~~~~~a~~----~--G 248 (588)
++-+++++++.... ..|.|+.++++|+..+++... + ++|. +|+ ....||......+ .+... . +
T Consensus 94 ~lae~L~~~~p~~~--~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~-s~~~~~~~~~~~~ 170 (466)
T PRK07030 94 ELSERLVKITPPGL--SRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAM-SVGDVALFTETYK 170 (466)
T ss_pred HHHHHHHHhCCCCc--CEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHH-hccCCccccccCC
Confidence 77777777764222 359999999998876665321 1 1233 455 5556765332221 11000 0 0
Q ss_pred ---CEEEEEeccCCC----C-------ccCHHHHHHHHhhhccccCCCcceEEEEeC-CCCCCCccCC----HHHH-HHH
Q 037063 249 ---ARVSSAEFAWPN----L-------RIHSGKLMKKIVGKRKKKKKKKRGLFVFPL-QSKVTGARYS----YMWM-SVA 308 (588)
Q Consensus 249 ---~~v~~v~~~~~~----~-------~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~-~sn~tG~~~p----l~~I-~~a 308 (588)
..+..+|..... + .-+.+++++.|.+ ..++...|++.- +....|.+.| ++.+ ++|
T Consensus 171 p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~-----~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc 245 (466)
T PRK07030 171 PLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAE-----HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREAC 245 (466)
T ss_pred ccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHh-----CCCceEEEEEecccccCCCcccCCHHHHHHHHHHH
Confidence 112333332100 0 0123556666651 125677777776 5666788776 4447 899
Q ss_pred HHcCcEEEEeCCCcC-CCC-----CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeee
Q 037063 309 AEKGWHVLLDATALG-SKD-----MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIE 382 (588)
Q Consensus 309 ~~~g~~vvvDaa~~~-~~d-----~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~ 382 (588)
+++|+++|+|.++.. +.. ...+++ .||++++ -|.+|.+=.-+|++++++++.+.+....... +.
T Consensus 246 ~~~g~llI~DEV~TGfGRtG~~~a~~~~gv---~PDiv~~--gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~-~~---- 315 (466)
T PRK07030 246 DRYGVHLIHDEIAVGFGRTGTMFACEQAGI---RPDFLCL--SKALTGGYLPLAAVLTTDTVYQAFYDDYPTL-RA---- 315 (466)
T ss_pred HHcCCEEEEeehhhCcCccccchHHHhcCC---CCCEEee--ehhccCCcccceEEEecHHHHHHHhcccccc-cc----
Confidence 999999999998643 210 122333 4999887 6855521013799999998876553211000 00
Q ss_pred cCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEE
Q 037063 383 PSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVR 462 (588)
Q Consensus 383 ~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~ 462 (588)
+...+|..-..+ ..++..+.|+.+++ +++.++.+.+.++|.+.|.++. . .+.+.
T Consensus 316 ----------------~~h~~T~~gnpl-a~aaa~a~L~~i~~---~~l~~~~~~~G~~l~~~L~~l~-~-----~~~v~ 369 (466)
T PRK07030 316 ----------------FLHSHSYTGNPL-ACAAALATLDIFEQ---DNVIENNRALARRMAEATAHLA-D-----HPHVA 369 (466)
T ss_pred ----------------cccCCCCCCCHH-HHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHh-c-----CCCEE
Confidence 001122221111 12444566777665 5677889999999999988862 1 12221
Q ss_pred EeCCCCCCCcccEEEEEeecCCCC--Cc--C---HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCC
Q 037063 463 IYGPKVMFDRGPSLAFNVFDWNGT--RI--D---PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNET 535 (588)
Q Consensus 463 i~~p~~~~~rg~iv~f~~~~~~g~--~i--~---~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~ 535 (588)
-+ ..+|.++.+.+...... .. + ...+.+.+.++||.++..
T Consensus 370 ~v-----rG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~---------------------------- 416 (466)
T PRK07030 370 EV-----RQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPL---------------------------- 416 (466)
T ss_pred Ee-----EeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEec----------------------------
Confidence 11 13566777776432111 00 1 124556666789987531
Q ss_pred cCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 536 RSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 536 ~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
| .+||+.+.+..|.+||+.+++.+.+.|++-
T Consensus 417 --g-~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 417 --G-SVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred --C-CEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 1 179999999999999999999999998764
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.4e-08 Score=104.30 Aligned_cols=349 Identities=9% Similarity=0.063 Sum_probs=199.0
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+.-|||..+. |--.+.+.+++.+.+..-.+... ... ..+...
T Consensus 53 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~---------------------~~~---------~~~~~~ 102 (460)
T PRK06916 53 VNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTL---------------------LGL---------ANVPSI 102 (460)
T ss_pred CCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCccc---------------------ccc---------CCHHHH
Confidence 368889997653 67778888888766643111100 000 134445
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCC------CCCC-eEE-EcCCCchhHHHHHHHHHHhc------C
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPF------YSNP-RLL-TVYDHENEAAALMIESSKKR------G 248 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~------~~gd-~ll-~~~e~~s~~~~~~~~~a~~~------G 248 (588)
++-++|++++.... ..+.|+.++|+|+..+++.... .+|. +|+ ....||......+ .+.... +
T Consensus 103 ~lae~L~~~~p~~~--~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~al-s~s~~~~~~~~~~ 179 (460)
T PRK06916 103 LLAEKLIEVVPEGL--KKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAV-SVGAIDLFHQVYS 179 (460)
T ss_pred HHHHHHHHhCCCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhH-hccCCcccccccC
Confidence 77788888764321 3599999999988776653311 2344 455 5566776333221 111000 0
Q ss_pred ---CEEEEEeccC----CCC-c------cCHHHHHHHHhhhccccCCCcceEEEEeC-CCCCCCccCC----HHHH-HHH
Q 037063 249 ---ARVSSAEFAW----PNL-R------IHSGKLMKKIVGKRKKKKKKKRGLFVFPL-QSKVTGARYS----YMWM-SVA 308 (588)
Q Consensus 249 ---~~v~~v~~~~----~~~-~------i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~-~sn~tG~~~p----l~~I-~~a 308 (588)
..+..+|... +.+ . -+.+++++.|+. ..++...|++.- +....|.+.| ++.+ ++|
T Consensus 180 ~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc 254 (460)
T PRK06916 180 SLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKE-----KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLC 254 (460)
T ss_pred CCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHh-----CCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHH
Confidence 1123333210 000 0 123456666641 124677777776 4666788764 3336 889
Q ss_pred HHcCcEEEEeCCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeee
Q 037063 309 AEKGWHVLLDATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIE 382 (588)
Q Consensus 309 ~~~g~~vvvDaa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~ 382 (588)
+++|+++|+|.++.. +. -...++ ..||+++ +-|-+|.+-.-+|++++++++++.+.+..... +.
T Consensus 255 ~~~g~llI~DEV~TG~GRtG~~~a~~~~g---v~PDiv~--~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~-~~---- 324 (460)
T PRK06916 255 TKYNVLFITDEVATGFGRTGKMFACEHEN---VTPDIMT--AGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQ-KT---- 324 (460)
T ss_pred HHcCCEEEeechhhCCCcCchhhHHHhcC---CCCCeee--eehhhhcCccccceeeecHHHHHHhhcccccc-Cc----
Confidence 999999999998643 21 011233 3499875 47855521013899999998876553211000 00
Q ss_pred cCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-
Q 037063 383 PSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV- 461 (588)
Q Consensus 383 ~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v- 461 (588)
.+ ..+|..-..+ .+++..+.|+.+.+ +.+.++++.+.+++.+.|.+|.. .+.+
T Consensus 325 ---------------~~-~~~T~~gnpl-~~aaa~a~l~~l~~---~~l~~~~~~~g~~l~~~l~~l~~------~~~v~ 378 (460)
T PRK06916 325 ---------------FF-HGHSYTGNPL-GCAVALANLELYEK---TNLIEQVARKTEYVATQLEDLFA------LKHVG 378 (460)
T ss_pred ---------------cc-cCCCCCCCHH-HHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHhhc------CCCeE
Confidence 00 1122221111 12444566666655 45778899999999999988621 1222
Q ss_pred EEeCCCCCCCcccEEEEEeecCCC--CCc----C-HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCC
Q 037063 462 RIYGPKVMFDRGPSLAFNVFDWNG--TRI----D-PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNE 534 (588)
Q Consensus 462 ~i~~p~~~~~rg~iv~f~~~~~~g--~~i----~-~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~ 534 (588)
.+- .+|.++.+.+.+... +.. . ...+...+.++||.++..
T Consensus 379 ~vr------G~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~--------------------------- 425 (460)
T PRK06916 379 DIR------QLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPL--------------------------- 425 (460)
T ss_pred Eee------cCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEec---------------------------
Confidence 111 346677776643211 111 0 234666677799987531
Q ss_pred CcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 535 TRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 535 ~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
| .++|+.+.+..|.+||+++++.+.+.|++
T Consensus 426 ---g-~~l~~~Ppl~it~~~id~~~~~l~~~l~~ 455 (460)
T PRK06916 426 ---G-NTIVFMPPLASTIDELDEMLRILYKAISD 455 (460)
T ss_pred ---C-CEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 1 18999999999999999999999998864
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.4e-07 Score=98.98 Aligned_cols=350 Identities=14% Similarity=0.149 Sum_probs=189.7
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|||..+. |--.+.+.+++.+.+.......+ ... ..+...
T Consensus 55 ~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~---------------------~~~---------~~~~~~ 104 (459)
T PRK06931 55 VEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHT---------------------LDL---------TTPLKD 104 (459)
T ss_pred CCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhccccc---------------------ccc---------CCHHHH
Confidence 368889998555 66677888887666532110000 000 134445
Q ss_pred HHHHHHHHHhCCCCCCceE-EEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHHh----c-----CCE
Q 037063 183 KIRKRIMDFMNISEDDYTL-VFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSKK----R-----GAR 250 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~v-vft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~~----~-----G~~ 250 (588)
++-+++.+.+........+ +|++++|+|+..+++....-.|. +|+ ....||......+ .+... . ...
T Consensus 105 ~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~al-s~t~~~~~~~~~~~~~~~ 183 (459)
T PRK06931 105 AFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGAL-AVTGNLSPKNAVNGLMPG 183 (459)
T ss_pred HHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHH-hhcCCcccccCCCCCCCC
Confidence 6777777776432111235 45578899887666532211343 455 5566776333222 11100 0 122
Q ss_pred EEEEeccCCCCcc--------CHHHHHHHHhhhccc--cCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEE
Q 037063 251 VSSAEFAWPNLRI--------HSGKLMKKIVGKRKK--KKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHV 315 (588)
Q Consensus 251 v~~v~~~~~~~~i--------~~e~l~~~i~~~~~~--~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~v 315 (588)
+..+|.. ...+. +.+.+++.+.+.... ...++...|++.-+...-|.+.| ++.+ ++|+++|+++
T Consensus 184 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~Ll 262 (459)
T PRK06931 184 VQFMPYP-HEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILL 262 (459)
T ss_pred cEEeCCC-ccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence 3444432 10000 122332222210000 11245777888777777788776 4557 8999999999
Q ss_pred EEeCCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccc
Q 037063 316 LLDATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEII 389 (588)
Q Consensus 316 vvDaa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~ 389 (588)
|+|.++.. +. -...+++ .||++++ -|-+|. ..-+|++..+++. +.+.+...+
T Consensus 263 I~DEV~tGfGRtG~~~a~~~~gv---~PDivt~--gK~l~g-G~Pi~av~~~~~~-~~~~~~~~~--------------- 320 (459)
T PRK06931 263 IVDEVQAGFARTGKMFAFEHAGI---EPDIIVM--SKAVGG-GLPLAVLGIKKEF-DAWQPGGHT--------------- 320 (459)
T ss_pred EEecchhcCCcCchHHHhhhcCC---CCCEEEe--cccccC-CcceeeeeeHHHH-hhccCCCCC---------------
Confidence 99998653 21 1223333 4998876 685542 1226777777653 433321111
Q ss_pred ccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCC
Q 037063 390 ELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKV 468 (588)
Q Consensus 390 ~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~ 468 (588)
+|..-..+ ..++..+.|+.+++ +.+.++.+.+.++|.+.|.++.-. .|.+ .+-
T Consensus 321 -------------~T~~gnpl-a~aaala~L~~l~~---~~l~~~~~~~G~~l~~~L~~l~~~-----~~~i~~vr---- 374 (459)
T PRK06931 321 -------------GTFRGNQL-AMATGLTTLKILKE---ENLAQNAAERGEWLKAQLAELQKR-----YPCIGNVR---- 374 (459)
T ss_pred -------------CCCCCCHH-HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHh-----CCCeEeEe----
Confidence 11111111 12333455665554 457788888888888888876311 1211 111
Q ss_pred CCCcccEEEEEeecCCCC-------CcC---HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCC
Q 037063 469 MFDRGPSLAFNVFDWNGT-------RID---PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSG 538 (588)
Q Consensus 469 ~~~rg~iv~f~~~~~~g~-------~i~---~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g 538 (588)
..|.++.+.+.+.... ..+ ...+.+.+.++||.+..+. .+
T Consensus 375 --G~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~----------------------------~~ 424 (459)
T PRK06931 375 --GRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGG----------------------------RN 424 (459)
T ss_pred --cCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecC----------------------------CC
Confidence 3466777776432110 001 1235556667899886421 01
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 539 VSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 539 ~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
..++|+.+.+..|.+||+.+++.+.+.|.+
T Consensus 425 ~~~l~~~Ppl~it~~eid~~~~~l~~~l~~ 454 (459)
T PRK06931 425 GNVVRLLPPLLITQAECEEFIDRFEQALLA 454 (459)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHHHHHHH
Confidence 128999999999999999999999998865
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-07 Score=96.99 Aligned_cols=307 Identities=14% Similarity=0.186 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHH--HHHHhC---------CCCCCCe--EEEcCCCchhHHHHHHHHHHhc
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFK--LLAESY---------PFYSNPR--LLTVYDHENEAAALMIESSKKR 247 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~--lv~~s~---------~~~~gd~--ll~~~e~~s~~~~~~~~~a~~~ 247 (588)
+.++|+.+++++|+++++ |+...|++-.+- ++..++ ||...++ .|.+...+ ..-..+++..
T Consensus 71 ipe~r~l~a~llgv~~~~--viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGY----DRHFai~E~~ 144 (425)
T PF12897_consen 71 IPEARELFAELLGVPPEN--VIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGY----DRHFAITEHF 144 (425)
T ss_dssp -HHHHHHHHHHHTS-GGG--EEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES------HHHHHHHHHC
T ss_pred hHHHHHHHHHHhCCCHHH--EEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCc----hHHHHHHHhh
Confidence 469999999999999876 777777765432 232222 3544444 44433321 1223567889
Q ss_pred CCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHH----HcCcEEEEeCCCc
Q 037063 248 GARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAA----EKGWHVLLDATAL 322 (588)
Q Consensus 248 G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~----~~g~~vvvDaa~~ 322 (588)
|++.+.||.. ++| .|++.+++++.++ ..-.++-++|--|||||..|+-+.+ ++|. ..+..++.|.|-.
T Consensus 145 Giemi~VpM~-~dG-PDmD~Ve~LV~~D-----~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~ 217 (425)
T PF12897_consen 145 GIEMIPVPMT-EDG-PDMDMVEELVAED-----PSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYA 217 (425)
T ss_dssp T-EEEEEEEE-TTE-E-HHHHHHHTHTS-----TTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTT
T ss_pred CcEEEecCCC-CCC-CCHHHHHHHHhcC-----CccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCce
Confidence 9999999997 554 7999999998621 1346899999999999999998888 6653 4689999998833
Q ss_pred C----CCC-CCC-CCC-----CCCCCc--EEEeccCccCCCCCCceEEEEEeCcchhcccCCCCC-CCceEeeecCCCcc
Q 037063 323 G----SKD-MDT-LGL-----SLFKPD--FLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSS-VSTIMGIEPSFSEI 388 (588)
Q Consensus 323 ~----~~d-~~~-l~l-----~~~~~D--~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g-~~g~v~~~~~~~~~ 388 (588)
+ ... ... +++ ..-++| ++.+|.+|+.=. ..|++++..+++.++.++..... ++|.-
T Consensus 218 vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~-GaGva~~aaS~~Nl~~~~~~~~~~tIgpd--------- 287 (425)
T PF12897_consen 218 VHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFP-GAGVAFFAASEANLAWIKKHLSVQTIGPD--------- 287 (425)
T ss_dssp T-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-T-TSS-EEEEE-HHHHHHHHHHHHHH-S------------
T ss_pred EeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccC-CcceeeeecCHHHHHHHHHHhcCceeCcc---------
Confidence 3 210 011 111 012244 678899994331 56899999888877655443311 00110
Q ss_pred cccccccccccccCCCCCccchhhHHHHHHHHHHHHHh--CHHHHHHHHH--------HHHHHHHHHHH-cccCCCCCCC
Q 037063 389 IELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL--GLILISNRAR--------YLINWLANALM-NLHHPHSETG 457 (588)
Q Consensus 389 ~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~--G~~~i~~r~~--------~L~~~l~~~L~-~L~h~~~~~g 457 (588)
.+ . -+ +..+++... |+....++.. ...+.|.++|. .+
T Consensus 288 -Kv----------------N------QL-RHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~-------- 335 (425)
T PF12897_consen 288 -KV----------------N------QL-RHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGL-------- 335 (425)
T ss_dssp -HH----------------H------HH-HHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGG--------
T ss_pred -HH----------------H------HH-HHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCC--------
Confidence 00 0 00 222333221 1222222111 22333444444 32
Q ss_pred CCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcC
Q 037063 458 IPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRS 537 (588)
Q Consensus 458 ~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~ 537 (588)
...+...| ..|-+++|++.+ | ....+..++++.||.+-.....-|. .+ +.
T Consensus 336 -~ia~Wt~P----~GGYFIsld~~~--G---~AkrvV~lakeAGV~LT~AGAtfPy-------------g~-------DP 385 (425)
T PF12897_consen 336 -GIASWTKP----KGGYFISLDVLD--G---TAKRVVELAKEAGVALTPAGATFPY-------------GK-------DP 385 (425)
T ss_dssp -TSEEE-------SBSS-EEEEEST--T----HHHHHHHHHHTTEE---TTTTSGG-------------G---------T
T ss_pred -CeeEecCC----CCceEEEEecCC--C---hHHHHHHHHHHhCceeCCCCCCCCC-------------CC-------CC
Confidence 23444444 346799999887 2 4788999999999998652222211 11 01
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHhhhhhhccc
Q 037063 538 GVSVVTAALGCLTNFEDTYRLWAFVSRFLDADFVEK 573 (588)
Q Consensus 538 g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~~~~~ 573 (588)
....|||++.+ -+.||++..++.+.-+++---+||
T Consensus 386 ~D~nIRiAPS~-P~leel~~Am~~~~~cv~la~~ek 420 (425)
T PF12897_consen 386 RDSNIRIAPSY-PSLEELETAMDVFATCVKLAAVEK 420 (425)
T ss_dssp TS-EEEE--SS-S-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEecCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12289999975 478999999999988777666664
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-07 Score=99.48 Aligned_cols=216 Identities=15% Similarity=0.089 Sum_probs=128.4
Q ss_pred HHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCcC-CCC-----CCCCCCCC
Q 037063 266 GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATALG-SKD-----MDTLGLSL 334 (588)
Q Consensus 266 e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~~-~~d-----~~~l~l~~ 334 (588)
+++++.|.+ ..+++..|++.-+...-|.+.| +++| ++|+++|+++|+|.++.. +.. .+.+++
T Consensus 213 ~~~~~~i~~-----~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-- 285 (443)
T PRK08297 213 AQARAAFER-----HPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGV-- 285 (443)
T ss_pred HHHHHHHHh-----CCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCC--
Confidence 445556641 2256888888888888888754 4457 899999999999999753 311 112332
Q ss_pred CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHH
Q 037063 335 FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKL 414 (588)
Q Consensus 335 ~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~ 414 (588)
.||+++ +.|.++ +|.+++.++..+.....+... .+ ..+|.+-..+ ..+
T Consensus 286 -~PDiv~--~gK~l~-----~~a~l~~~~i~~~~~~~~~~~----------------------~~-~~~T~~gnpl-~~a 333 (443)
T PRK08297 286 -RPDIVA--FGKKTQ-----VCGIMAGRRVDEVEDNVFAVS----------------------SR-INSTWGGNLV-DMV 333 (443)
T ss_pred -CCCEEE--eccccc-----ccceecchHHHHhhhhhccCc----------------------cc-cCCCCCccHH-HHH
Confidence 499886 478543 344445544322111111000 00 1223322221 123
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE--EEeCCCCCCCcccEEEEEeecCCCCCcCHHH
Q 037063 415 VECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV--RIYGPKVMFDRGPSLAFNVFDWNGTRIDPAL 492 (588)
Q Consensus 415 al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v--~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~ 492 (588)
+..++|+.+.+ +.+.++++.+.+++.+.|.++.-. .+.+ .+- .+|.++.+.+.+. .....
T Consensus 334 aa~a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~-----~~~~~~~vr------g~G~~~~i~~~~~----~~~~~ 395 (443)
T PRK08297 334 RARRILEVIEE---DGLVENAARQGEYLLARLEELAAE-----FPAVVSNVR------GRGLMCAFDLPTT----ADRDE 395 (443)
T ss_pred HHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHH-----CCCcceeee------ccceEEEEEecCH----HHHHH
Confidence 33455555544 567788888888888888775211 1211 221 2467777777541 11334
Q ss_pred HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 493 VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 493 v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+.+.+.++||.+.++ |...+|+++.+..|.+||+++++.|.+.+++
T Consensus 396 ~~~~l~~~Gvl~~~~------------------------------~~~~lr~~P~l~~t~~eid~~l~~l~~~l~~ 441 (443)
T PRK08297 396 VIRRLWEEGVLVLPC------------------------------GERSIRFRPALTVTTEEIDAAIDALRRALPE 441 (443)
T ss_pred HHHHHHHCCEEEecC------------------------------CCCeEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 566666899988542 1127999999999999999999999988764
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.5e-10 Score=115.13 Aligned_cols=173 Identities=16% Similarity=0.145 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHH--HHHHHHhcCCEEEEEec
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAAL--MIESSKKRGARVSSAEF 256 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~--~~~~a~~~G~~v~~v~~ 256 (588)
..+..+.+.++.+.|+. + .+++.|...|+-+++.++ -+|.+|+....+--++-.. +-+..+..|++++.|-.
T Consensus 47 ~R~~~v~~ll~~ltgAe--a--A~VvNnnaAAv~L~l~~l--a~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGt 120 (367)
T PF03841_consen 47 SRYAHVEELLCELTGAE--A--ALVVNNNAAAVLLALNTL--AKGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGT 120 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccc--c--cccccccccccccccccc--cccccccccccccccccccccccccccccccccccccc
Confidence 34567788889999984 2 677788888888888886 4566765443332211111 23455677999988875
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCc----cCCHHHH-HHHHHcCcEEEEeCCCc---------
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGA----RYSYMWM-SVAAEKGWHVLLDATAL--------- 322 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~----~~pl~~I-~~a~~~g~~vvvDaa~~--------- 322 (588)
. .+...+|++++|+ ++|.++...|.||..-. ..+++++ ++||+||+++++|..+.
T Consensus 121 t---N~t~~~Dye~AI~--------e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~g 189 (367)
T PF03841_consen 121 T---NRTHLSDYEKAIT--------ENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYG 189 (367)
T ss_dssp ---------------------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT-
T ss_pred c---ccccccccccccc--------ccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCccccc
Confidence 3 3567889999998 89999999999998422 3478888 99999999999999872
Q ss_pred CCCCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccC
Q 037063 323 GSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSG 370 (588)
Q Consensus 323 ~~~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~ 370 (588)
+|....--..-..++|.+++|+-|++|. |. .|+++.|++++++++.
T Consensus 190 l~~Ep~v~~~~~~GaDlV~fSGdKlLGG-PQ-aGiI~Gkk~lI~~lk~ 235 (367)
T PF03841_consen 190 LPDEPTVQEYLAAGADLVTFSGDKLLGG-PQ-AGIIVGKKELIEKLKK 235 (367)
T ss_dssp ---------CCCCT-SEEEEETTSSSSS--S--EEEEEEHHHHHHHHH
T ss_pred CccccHHHHHhhcCCCEEEEECCCcCCC-CC-eEEEEeCHHHHHHHhh
Confidence 1210000111234599999999999984 77 6999999999998764
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.2e-07 Score=98.50 Aligned_cols=203 Identities=15% Similarity=0.075 Sum_probs=116.5
Q ss_pred CcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCc-CCCC-----CCCCCCCCCCCcEEEeccCccCCC
Q 037063 282 KKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATAL-GSKD-----MDTLGLSLFKPDFLICSFYKIFGE 350 (588)
Q Consensus 282 ~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~-~~~d-----~~~l~l~~~~~D~vv~S~~K~~G~ 350 (588)
.++..|++.-+....|.+.| ++.| ++|+++|+++|+|.++. ++.. .+.++ ..||++++ .|.+
T Consensus 217 ~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~g---v~PDi~~~--gK~~-- 289 (431)
T TIGR03251 217 HDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLG---VQPDIVAF--GKKT-- 289 (431)
T ss_pred CcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcC---CCCCEEEe--cccC--
Confidence 57888999989888898863 5557 89999999999999976 3311 11223 34999875 4532
Q ss_pred CCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHH
Q 037063 351 NPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLIL 430 (588)
Q Consensus 351 ~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~ 430 (588)
| ..|++ +.++..+......... + . ..+|..-..+ .+++..++|+.+.+.+
T Consensus 290 -~-~~g~~-~~~~i~~~~~~~~~~~-~--------------------~--~~~T~~gnpl-~~aaa~a~L~~l~~~~--- 339 (431)
T TIGR03251 290 -Q-VCGIM-AGRRVDEVADNVFAVP-S--------------------R--LNSTWGGNLV-DMVRATRILEIIEEER--- 339 (431)
T ss_pred -c-cceEE-ecchHHHhhhhcccCc-c--------------------c--cCCCCCCCHH-HHHHHHHHHHHHHhcC---
Confidence 2 23444 4443211111011000 0 0 1122211111 1245557777776644
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEecccccc
Q 037063 431 ISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQ 510 (588)
Q Consensus 431 i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c 510 (588)
+.++++.+.+++.+.|.++... .+.+ .++. ..+|.++.+.+.+.+ ....+.+.+.++||.+...
T Consensus 340 l~~~~~~~g~~l~~~L~~l~~~-----~~~~--i~~v--rg~G~~~~i~~~~~~----~~~~~~~~l~~~Gvl~~~~--- 403 (431)
T TIGR03251 340 LVDNARVQGAHLLARLHELAAE-----FPHL--VSNP--RGRGLMCAFDLPSTA----DRDEVIRQLYREGVLLLGC--- 403 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----Cccc--eecc--cccceeEEEEeCCHH----HHHHHHHHHHhCCeEEecC---
Confidence 4455555666666666553100 1211 1111 134677777775411 1334666677889987532
Q ss_pred CcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 511 NIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 511 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
|...+|+++++.+|.+||+++++.|.+
T Consensus 404 ---------------------------g~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 404 ---------------------------GERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred ---------------------------CCCeEEEECCccCCHHHHHHHHHHHHh
Confidence 112799999999999999999999875
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.1e-08 Score=99.49 Aligned_cols=340 Identities=14% Similarity=0.118 Sum_probs=192.7
Q ss_pred CeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHH
Q 037063 111 NYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMD 190 (588)
Q Consensus 111 ~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~ 190 (588)
=-+|-|-.|-.+.-++|.++-..-+... .+. +|. . ..| ....++.+++
T Consensus 33 IGvY~de~Gk~pvl~aV~~Ae~~l~~~~--~~k-------~Yl--------------~---i~G------~~~f~~~~~~ 80 (396)
T COG1448 33 IGVYKDEDGKTPVLRAVKKAEKRLLEQE--KTK-------NYL--------------P---IEG------LPEFLEAVQK 80 (396)
T ss_pred eeeeeCCCCCcchhHHHHHHHHHhhccc--ccc-------ccC--------------C---cCC------cHHHHHHHHH
Confidence 3489999999999888887743222111 110 111 0 001 1234444444
Q ss_pred H-hCCC-----CCCceEEEecCHHHHHHHHHHhCC-CCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec-cCCCCc
Q 037063 191 F-MNIS-----EDDYTLVFTANQSSAFKLLAESYP-FYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF-AWPNLR 262 (588)
Q Consensus 191 ~-lga~-----~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~-~~~~~~ 262 (588)
+ ||.+ ++.-.-+=|.|+|.|+++.++-+. +.+...|..+.....| + ..+.+..|.+|...|. +.++..
T Consensus 81 llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~N-H---~~If~~aGl~v~~Y~Yyd~~~~~ 156 (396)
T COG1448 81 LLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPN-H---KAIFEAAGLEVETYPYYDAETKG 156 (396)
T ss_pred HhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHh-H---HHHHHhcCCceeeeecccccccc
Confidence 3 5643 122123556899999999998763 2233335443333221 2 2344567999988875 445566
Q ss_pred cCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCC-CcCC--CCCCCCCC---
Q 037063 263 IHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDAT-ALGS--KDMDTLGL--- 332 (588)
Q Consensus 263 i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa-~~~~--~d~~~l~l--- 332 (588)
+|.+.+...|.+ ..++.-++.=.-++||||.-.+.++ | ++.+++|++.++|-| |..+ .+-+..++
T Consensus 157 ~df~~mla~L~~-----a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~ 231 (396)
T COG1448 157 LDFDGMLADLKT-----APEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLF 231 (396)
T ss_pred ccHHHHHHHHHh-----CCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHH
Confidence 898888888873 1133344444556899999998764 5 889999999999988 4443 11111111
Q ss_pred -CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchh
Q 037063 333 -SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVS 411 (588)
Q Consensus 333 -~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~ 411 (588)
.....=+++.|+.|.||....++|++.+--+..+...... +++... - |- ...+|+-.+..
T Consensus 232 a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~----sqlk~~----------i----R~-~ySnPP~~Ga~ 292 (396)
T COG1448 232 AEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVL----SQLKAI----------I----RT-NYSNPPAHGAA 292 (396)
T ss_pred HHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHH----HHHHHH----------H----Hh-ccCCCchhhHH
Confidence 1112356778999998865677998876533222111110 000000 0 00 11122222210
Q ss_pred hHHHHH--HHHH--HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCC
Q 037063 412 SKLVEC--KGLD--HADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTR 487 (588)
Q Consensus 412 ~~~al~--~aL~--~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~ 487 (588)
.++.+. ..|+ +.++ ++.+++|+..+++.|++.|+++.-+ ..+..+. .+.++++|. +
T Consensus 293 vva~IL~~p~Lra~W~~E--l~~Mr~Ri~~mR~~lv~~L~~~~~~------~~f~~i~-----~Q~GMFsy~--G----- 352 (396)
T COG1448 293 VVATILNNPELRAEWEQE--LEEMRQRILEMRQALVDALKALGAP------RNFDFII-----SQRGMFSYT--G----- 352 (396)
T ss_pred HHHHHhCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhCCC------cccchHh-----hcCceeecC--C-----
Confidence 000000 1121 2222 6889999999999999999985211 1122222 234554444 4
Q ss_pred cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 488 IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 488 i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
+++++|.++.+++||.+-. .| |+++.-. |...|+.++++|.+.
T Consensus 353 ls~~QV~rLree~~IY~v~------------------------------sG----Ri~vaGl-~~~ni~~va~ai~~v 395 (396)
T COG1448 353 LSPEQVDRLREEFGIYLVA------------------------------SG----RINVAGL-NTSNIDYVAKAIAAV 395 (396)
T ss_pred CCHHHHHHHHHhccEEEec------------------------------CC----eeeeccC-ChhhHHHHHHHHHhh
Confidence 6799999999999998642 22 5565443 568999999988764
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.7e-07 Score=98.27 Aligned_cols=352 Identities=10% Similarity=0.035 Sum_probs=193.1
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|.++.-|||..+. |--.+.+.+++.+.+..-..... ... ..+..
T Consensus 60 D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~---------------------~~~---------~~~~~ 109 (472)
T PRK08742 60 GHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVML---------------------AGF---------THEPA 109 (472)
T ss_pred eCCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccc---------------------ccc---------CCHHH
Confidence 3367889997644 66677888887655532111000 000 02334
Q ss_pred HHHHHHHHHHhCCC---CCCceEEEecCHHHHHHHHHHhCC-C-----CCCC-eEE-EcCCCchhHHHHHHHHHH----h
Q 037063 182 SKIRKRIMDFMNIS---EDDYTLVFTANQSSAFKLLAESYP-F-----YSNP-RLL-TVYDHENEAAALMIESSK----K 246 (588)
Q Consensus 182 ~~~r~~ia~~lga~---~~e~~vvft~g~T~al~lv~~s~~-~-----~~gd-~ll-~~~e~~s~~~~~~~~~a~----~ 246 (588)
.++-+++++++... .+-..|.|+.++|+|+..+++... + +++. +|+ ....||......+ .... +
T Consensus 110 ~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gal-s~~~~~~~~ 188 (472)
T PRK08742 110 VQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGAL-AVGDIPLYR 188 (472)
T ss_pred HHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhh-hccCCcccc
Confidence 56777777776421 011259999999998877665431 1 1233 455 5566776332221 1100 0
Q ss_pred c--C---CEEEEEeccCCC---Ccc--------CHHHHHHHHhhhccccCCCcceEEEEeC-CCCCCCccCC----HHHH
Q 037063 247 R--G---ARVSSAEFAWPN---LRI--------HSGKLMKKIVGKRKKKKKKKRGLFVFPL-QSKVTGARYS----YMWM 305 (588)
Q Consensus 247 ~--G---~~v~~v~~~~~~---~~i--------~~e~l~~~i~~~~~~~~~~~t~Lv~~~~-~sn~tG~~~p----l~~I 305 (588)
. + ..+..+|..... ... +.+.+++.+.. ..++...|++.- +....|.+.| ++.+
T Consensus 189 ~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~iAAvI~EPviqg~gG~~~~p~~fl~~l 263 (472)
T PRK08742 189 RVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQ-----SPGEICALILEPRLQCAGGMRMHHPAYLRRA 263 (472)
T ss_pred cccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHh-----CCCceEEEEEccccccCCCcccCCHHHHHHH
Confidence 0 0 112334332000 001 23556666641 124677788876 4666788766 3346
Q ss_pred -HHHHHcCcEEEEeCCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCce
Q 037063 306 -SVAAEKGWHVLLDATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTI 378 (588)
Q Consensus 306 -~~a~~~g~~vvvDaa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~ 378 (588)
++|+++|+++|+|.++.. +. -...+| ..||++++ -|.+|.+-.-+|++++++++.+.+...... +.
T Consensus 264 r~lc~~~gillI~DEV~TGfGRtG~~~a~e~~g---v~PDiv~~--gKgl~gG~~Plaav~~~~ei~~~~~~~~~~--~~ 336 (472)
T PRK08742 264 RELCDAHGAFLIADEIATGFGRTGTLFACEQAG---VMPDLLCL--SKGLTGGFLPLSAVLATQQLYDAFLDDSRE--RA 336 (472)
T ss_pred HHHHHHcCCEEEEechhhCCCCCccchHHHhcC---CCCCEEEE--cccccCCCCCcceeeccHHHHHHhhccCcc--Cc
Confidence 889999999999998653 31 012233 34999887 686552101279999999887655321100 00
Q ss_pred EeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCC
Q 037063 379 MGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGI 458 (588)
Q Consensus 379 v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~ 458 (588)
|...+|.+-..+ ..++..+.|+.+++ +.+.++.+.+.++|.+.+..+. ..
T Consensus 337 --------------------~~h~~T~~gnpl-~~Aaa~a~L~~i~~---~~l~~~~~~~g~~l~~~~~~~~------~~ 386 (472)
T PRK08742 337 --------------------FLHSHSYTGNPL-ACAAALATLDIFAD---DDVIARNQPTAARMTQLAAQIG------EH 386 (472)
T ss_pred --------------------cCcCCCCCccHH-HHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHh------cC
Confidence 001112221111 12455566777766 4456677777777765555431 01
Q ss_pred CeEEEeCCCCCCCcccEEEEEeecCCC--CCcC-----HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcC
Q 037063 459 PLVRIYGPKVMFDRGPSLAFNVFDWNG--TRID-----PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSG 531 (588)
Q Consensus 459 ~~v~i~~p~~~~~rg~iv~f~~~~~~g--~~i~-----~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~ 531 (588)
+.+ ++ -..+|-++.+.+..... +... ...+.+.+.++||.++..
T Consensus 387 ~~i---~d--vRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~------------------------ 437 (472)
T PRK08742 387 PHV---AD--VRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPL------------------------ 437 (472)
T ss_pred CCe---ee--EeccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEec------------------------
Confidence 222 11 01356777777743111 1111 133555666789987531
Q ss_pred CCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 532 TNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 532 ~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
| .+||+.+.+..|.+||+.+++.|.+.|++
T Consensus 438 ------g-~vi~~~PpL~it~~ei~~~~~~l~~~l~~ 467 (472)
T PRK08742 438 ------G-DVLYWMPPYCVDEAQLALLADTTRHAIDE 467 (472)
T ss_pred ------C-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 28999999999999999999999998865
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.9e-07 Score=95.82 Aligned_cols=308 Identities=14% Similarity=0.097 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--C----CCCCe-EEE-cCCCchhHHHHH-----HHHHHh-
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--F----YSNPR-LLT-VYDHENEAAALM-----IESSKK- 246 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--~----~~gd~-ll~-~~e~~s~~~~~~-----~~~a~~- 246 (588)
..++-++++++..-. +=..|.||.|+++|+..+++... | +|..+ +++ ...||.+.+..| ......
T Consensus 89 a~~LA~~L~~~aP~~-~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~ 167 (449)
T COG0161 89 AIELAEKLAELAPEG-GLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAF 167 (449)
T ss_pred HHHHHHHHHHhCCCC-CccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhh
Confidence 457777888877621 11359999999999887766431 1 23333 553 566766444332 111101
Q ss_pred c---CCEEEEEeccC--CC---Cc------cCHHHHHHHHhhhccccCCCcceEEEEeCCCCC-CCccCC----HHHH-H
Q 037063 247 R---GARVSSAEFAW--PN---LR------IHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKV-TGARYS----YMWM-S 306 (588)
Q Consensus 247 ~---G~~v~~v~~~~--~~---~~------i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~-tG~~~p----l~~I-~ 306 (588)
. -..+..++... .. +. -..++|+++|.+ ...++...|++.-+.-- .|.+.| +++| +
T Consensus 168 ~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~----~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~ 243 (449)
T COG0161 168 YDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILE----HGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVRE 243 (449)
T ss_pred ccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHh----cCcccEEEEEecccccccCCcccCChHHHHHHHH
Confidence 1 11223333321 00 11 124567777762 22245555665555444 888887 4557 8
Q ss_pred HHHHcCcEEEEeCCCcC-C-----CCCCCCCCCCCCCcEEEeccCccC--CCCCCceEEEEEeCcchhcccCCCCCCCce
Q 037063 307 VAAEKGWHVLLDATALG-S-----KDMDTLGLSLFKPDFLICSFYKIF--GENPSGFGCLFVKKSSASVLSGSTSSVSTI 378 (588)
Q Consensus 307 ~a~~~g~~vvvDaa~~~-~-----~d~~~l~l~~~~~D~vv~S~~K~~--G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~ 378 (588)
+|++||+++|.|.+... + .-++..++ .||+++.+ |-+ |+ .-+|++++++++.+.+..-. . +.
T Consensus 244 iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi---~PDi~~~a--KGLT~GY--~Pl~a~l~~~~I~~~~~~~~-~--~~ 313 (449)
T COG0161 244 ICDKYGILLIADEVATGFGRTGKMFACEHAGI---VPDILCLA--KGLTGGY--LPLSAVLTSDRIYEAFSDGD-A--GA 313 (449)
T ss_pred HHHHcCcEEEeecceeCCCcCchhhhhhhcCC---CCCeeeec--ccccccc--hhhHhHhhhHHHHHHHhccc-C--Ce
Confidence 99999999999987322 2 12344443 49998764 733 22 22788888888877664332 1 11
Q ss_pred EeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHc-ccCCCCCCC
Q 037063 379 MGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMN-LHHPHSETG 457 (588)
Q Consensus 379 v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~-L~h~~~~~g 457 (588)
|--.-|..-..++ .++..+.|+.+++ +.+.+|++.+..+|.++|.+ +. +
T Consensus 314 --------------------f~HG~TYsghPla-cAaAla~L~i~e~---e~l~~~~~~~~~~l~~~L~~~l~------~ 363 (449)
T COG0161 314 --------------------FMHGHTYSGNPLA-CAAALANLDILEE---EDLLERVAEIGAYLQAGLQAALA------D 363 (449)
T ss_pred --------------------eccCCccccCHHH-HHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHhcc------c
Confidence 1001122222221 1222244455544 66788888999999999987 32 1
Q ss_pred CCeEEEeCCCCCCCcccEEEEEeecCCCCCc-----CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCC
Q 037063 458 IPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI-----DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGT 532 (588)
Q Consensus 458 ~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i-----~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~ 532 (588)
.|.| ++- ...|-+.++.+....+... -...+.+.+.++|+.+|+.
T Consensus 364 ~p~V---gdV--R~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~------------------------- 413 (449)
T COG0161 364 HPLV---GDV--RGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPL------------------------- 413 (449)
T ss_pred CCcE---EEe--eccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeec-------------------------
Confidence 1222 210 1345666777654433221 1345677788899999864
Q ss_pred CCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 533 NETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 533 ~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
|. .|=+++-+-.|.|||+++++.+.+.|+..
T Consensus 414 -----g~-~i~~~PPliit~~eid~l~~~l~~al~~~ 444 (449)
T COG0161 414 -----GD-VIYLMPPLIITREEIDELVDALREALDET 444 (449)
T ss_pred -----CC-EEEEcCCccCCHHHHHHHHHHHHHHHHHH
Confidence 11 67788889999999999999999988764
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.8e-07 Score=96.01 Aligned_cols=209 Identities=12% Similarity=0.105 Sum_probs=113.6
Q ss_pred CCCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+.-|||..+ .|--.+.+.+++.+.+.... + | .. ......
T Consensus 45 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~--~---------------~------~~----------~~~~~~ 91 (431)
T PRK06209 45 VDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGC--N---------------F------TR----------PSAIEL 91 (431)
T ss_pred CCCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCc--C---------------C------CC----------CCHHHH
Confidence 36888999854 35567788888766653210 0 0 00 022333
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCe-EEEc--CCCchhHHHHHHHH-HHhcCCE----EEEE
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPR-LLTV--YDHENEAAALMIES-SKKRGAR----VSSA 254 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~-ll~~--~e~~s~~~~~~~~~-a~~~G~~----v~~v 254 (588)
++-+++.+++.. . ..|.|+.++|+|+..+++.-..-.|.. |+.. ..+|+ ...|.... ....|.. ....
T Consensus 92 ~la~~l~~~~p~-~--~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~-~~~~~~g~~~~~~~~~~~~~~~~~ 167 (431)
T PRK06209 92 DAAESFLELIDG-A--DMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFS-TDDWFIGTTPMSAGIPASVSALTV 167 (431)
T ss_pred HHHHHHHHhCCc-c--ceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCcccc-ccccccccCCCCCCCChhHhcccc
Confidence 567777777632 1 259999999998887666322123444 5543 23332 01110000 0000110 0011
Q ss_pred eccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCC
Q 037063 255 EFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLS 333 (588)
Q Consensus 255 ~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~ 333 (588)
.+. .-|+++|+++|+. ..++...|++..+....+..-.+++| ++|+++|+++|+|.++. +......+..
T Consensus 168 ~~~----~~d~~~l~~~l~~-----~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~t-G~~~~~~g~~ 237 (431)
T PRK06209 168 TFR----YNDIASLEALFED-----HPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMIT-GFRWHMRGAQ 237 (431)
T ss_pred ccC----CCCHHHHHHHHHh-----CCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccc-cCCcCcchhh
Confidence 111 1267889988862 11356677776654433333337788 99999999999999873 3211111111
Q ss_pred ---CCCCcEEEeccCccCCCCCCceEEEEEeCcchhc
Q 037063 334 ---LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASV 367 (588)
Q Consensus 334 ---~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~ 367 (588)
...||+ ..+-|.+|. ..-+|++..++++++.
T Consensus 238 ~~~gv~PDi--~t~gK~lgg-G~p~~av~~~~~i~~~ 271 (431)
T PRK06209 238 KLYGIVPDL--SCFGKALGN-GFAVSALAGKREYMEL 271 (431)
T ss_pred HHhCCCcce--eeehhhhcC-CcccEEEEEHHHHHhh
Confidence 124887 446897763 2237888888887664
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.4e-07 Score=95.18 Aligned_cols=320 Identities=12% Similarity=0.042 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCC-CCCeEEEcCC-----CchhHHHHHHHHHHhcCCEEEE
Q 037063 180 LESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFY-SNPRLLTVYD-----HENEAAALMIESSKKRGARVSS 253 (588)
Q Consensus 180 ~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~-~gd~ll~~~e-----~~s~~~~~~~~~a~~~G~~v~~ 253 (588)
-+.++++.++++||-. .+++|..++.+-+++...+ .+ +|+++....+ |.. .+......+...|+.++.
T Consensus 75 Sv~~Lee~vael~G~E----~alpthqGRgaE~Il~~~~-~~~~g~e~g~~~~~~~v~hn~-~fett~g~a~l~G~~~~~ 148 (467)
T TIGR02617 75 SYYALAESVKNIFGYQ----YTIPTHQGRGAEQIYIPVL-IKKREQEKGLDRSKMVAFSNY-FFDTTQGHSQINGCTARN 148 (467)
T ss_pred hHHHHHHHHHHHhCCc----eEEECCCCchHHHHHHHhh-cccccccccccccccccceEE-EEecchHHHHHcCceeec
Confidence 3568999999999984 2889988899988888887 56 6777553322 111 111112334557888877
Q ss_pred Eecc--------C-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCC-CCCccCCHHHH----HHHHHcCcEEEEeC
Q 037063 254 AEFA--------W-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSK-VTGARYSYMWM----SVAAEKGWHVLLDA 319 (588)
Q Consensus 254 v~~~--------~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn-~tG~~~pl~~I----~~a~~~g~~vvvDa 319 (588)
++.+ . ..|.+|+++|+++|.. ...++...+.....+| .-|..+|++.| ++|+++|+.+++|+
T Consensus 149 l~~~ea~~~~~~~~fkG~~dl~~le~~I~~----~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDg 224 (467)
T TIGR02617 149 VYTKEAFDTGVRYDFKGNFDLEGLERGIEE----VGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDS 224 (467)
T ss_pred ccchhhcccccCCCCCCCcCHHHHHHHHhh----cCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEh
Confidence 6421 1 3588999999999982 1111222222222233 35888998885 78999999999999
Q ss_pred C-----CcC---------CCCCCCCCCC-CCCCcEEEeccCccCCCCCCceEEEEEeCc----chhcccCCCCCCCceEe
Q 037063 320 T-----ALG---------SKDMDTLGLS-LFKPDFLICSFYKIFGENPSGFGCLFVKKS----SASVLSGSTSSVSTIMG 380 (588)
Q Consensus 320 a-----~~~---------~~d~~~l~l~-~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~----~~~~l~~~~~g~~g~v~ 380 (588)
| +++ ++++..+--. -..+|.+.+|+.|-+|. |.| |+|..+++ +.++++....-.-
T Consensus 225 ARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgA-pvG-g~Lag~d~~~~~l~~~~~~~~i~~E---- 298 (467)
T TIGR02617 225 ARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMV-PMG-GLLCFKDDSFFDVYTECRTLCVVQE---- 298 (467)
T ss_pred HHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCC-ccc-ceEEecchhHHHHHHHHHhhccccc----
Confidence 7 221 1111111000 02389999999998885 776 77777776 1223322110000
Q ss_pred eecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe
Q 037063 381 IEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPL 460 (588)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~ 460 (588)
.|-..|..+ -..+.++..+|+..- ..+.+..|+.+ .+||.++|.+. |+|.
T Consensus 299 -----------------Gf~tYGGla---grd~ea~a~Gl~e~~--~~~yl~~ri~q-v~yl~~~L~~~-------Gvpi 348 (467)
T TIGR02617 299 -----------------GFPTYGGLE---GGAMERLAVGLYDGM--NLDWLAYRINQ-VQYLVNGLEEI-------GVVC 348 (467)
T ss_pred -----------------CCcCcCchh---HHHHHHHHhhhhhcc--cHHHHHHHHHH-HHHHHHHHHhC-------CCcE
Confidence 010111111 112355666665442 23555555544 46888888875 6776
Q ss_pred EEEeCCCCCCCcccEEEEE----eecCCCCCcCHHH-HHHHHHhCCcE-eccccccCcccccchHHHHHHHHhhhcCCCC
Q 037063 461 VRIYGPKVMFDRGPSLAFN----VFDWNGTRIDPAL-VQKLADRHNIS-LSCGFLQNIFFSGEYEQERVRVLETRSGTNE 534 (588)
Q Consensus 461 v~i~~p~~~~~rg~iv~f~----~~~~~g~~i~~~~-v~~~l~~~gI~-v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~ 534 (588)
++ .| |..|-+. ++.-.+....... ...+..+.||. +-.|++... +....+.
T Consensus 349 ~~-~G-------ghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~---------------rd~~~~~ 405 (467)
T TIGR02617 349 QQ-AG-------GHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLG---------------RDPKTGK 405 (467)
T ss_pred Ee-cC-------ccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecc---------------cCCCCCc
Confidence 55 33 2222221 1221222233333 34555677885 233332110 0000000
Q ss_pred C-cCCccEEEEecC--CCCCHHHHHHHHHHHHHhhhhh
Q 037063 535 T-RSGVSVVTAALG--CLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 535 ~-~~g~~~vRvSlg--~~~t~eDv~~li~~l~~~l~~~ 569 (588)
. ......||+.+. .| |.+.+|..++.|..+.+.-
T Consensus 406 ~~~~~~el~RlaipRrvy-t~~h~d~v~~~~~~~~~~~ 442 (467)
T TIGR02617 406 QLPCPAELLRLTIPRATY-TQTHMDFIIEAFKHVKENA 442 (467)
T ss_pred cCCCccceeeeccccccc-cHhHHHHHHHHHHHHHhhh
Confidence 0 122348999884 44 5699999999999876543
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-06 Score=87.14 Aligned_cols=168 Identities=15% Similarity=0.185 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEe--cCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHH-------HHHhcCCE
Q 037063 180 LESKIRKRIMDFMNISEDDYTLVFT--ANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIE-------SSKKRGAR 250 (588)
Q Consensus 180 ~~~~~r~~ia~~lga~~~e~~vvft--~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~-------~a~~~G~~ 250 (588)
=.+.+.+..|+.||+. ..+|=. .|+|+|+.+++.++ ++|||++++...-|-.....++. ..+..|++
T Consensus 55 GRd~le~iyA~vfgaE---~ALVRpq~vSGTHAi~~~Lfg~-LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~ 130 (403)
T PF06838_consen 55 GRDKLERIYADVFGAE---DALVRPQFVSGTHAIALALFGV-LRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIK 130 (403)
T ss_dssp HHHHHHHHHHHHCT-S---EEEEETTS-SHHHHHHHHHHHH---TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-E
T ss_pred cHHHHHHHHHHHhCch---hhhhcccccchHHHHHHHHHhc-CCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCce
Confidence 3467777889999994 234433 48999999999999 99999977432222112222221 12456899
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCcc----CCHHHH----HHHHH--cCcEEEEeCC
Q 037063 251 VSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGAR----YSYMWM----SVAAE--KGWHVLLDAT 320 (588)
Q Consensus 251 v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~----~pl~~I----~~a~~--~g~~vvvDaa 320 (588)
...+++. +++.+|.+.++++|+ ++|++|.+.-. .|.- +.+++| +.+|+ .++.++||.|
T Consensus 131 Y~~v~L~-~dg~~D~~~i~~~~~--------~~tk~v~IQRS---rGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNC 198 (403)
T PF06838_consen 131 YREVPLT-EDGTIDWEAIKKALK--------PNTKMVLIQRS---RGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNC 198 (403)
T ss_dssp EEE--B--TTSSB-HHHHHHHHH--------TTEEEEEEE-S----TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-T
T ss_pred eEEEeec-CCCCcCHHHHHHhhc--------cCceEEEEecC---CCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 9999998 889999999999998 89999988643 4432 355665 44444 4899999998
Q ss_pred --CcCC-CCCCCCCCCCCCCcEEEeccCccC--CCCCCceEEEEEeCcchhccc
Q 037063 321 --ALGS-KDMDTLGLSLFKPDFLICSFYKIF--GENPSGFGCLFVKKSSASVLS 369 (588)
Q Consensus 321 --~~~~-~d~~~l~l~~~~~D~vv~S~~K~~--G~~P~G~G~L~v~~~~~~~l~ 369 (588)
.++- .....+| +|+++.|+-|-. |..|+| |++..|++++++..
T Consensus 199 YGEFvE~~EP~~vG-----ADl~aGSLIKNpGGgiAptG-GYIaGr~~lVe~~a 246 (403)
T PF06838_consen 199 YGEFVETQEPTEVG-----ADLMAGSLIKNPGGGIAPTG-GYIAGRKDLVERAA 246 (403)
T ss_dssp TTTTTSSS-GGGGT------SEEEEETTSGGGTTT-SS--EEEEESHHHHHHHH
T ss_pred cceeccccCccccc-----hhheeccceeCCCCCccCcC-CEEechHHHHHHHH
Confidence 3442 1223445 999999999944 355665 99999999987543
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-06 Score=87.02 Aligned_cols=299 Identities=12% Similarity=0.091 Sum_probs=178.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHH-----hCCCC--CCCe--EEEc-CCCchhHHHHHH-----H
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAE-----SYPFY--SNPR--LLTV-YDHENEAAALMI-----E 242 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~-----s~~~~--~gd~--ll~~-~e~~s~~~~~~~-----~ 242 (588)
.++..+..+.+..+|+-+ -|.-+..+.+|...++. ++..+ |.++ |++. ..+|.-....+. .
T Consensus 100 nd~~~~f~~~vt~lf~~~----kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~d 175 (427)
T KOG1402|consen 100 NDVLGEFAEYVTKLFGYD----KVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPD 175 (427)
T ss_pred hhhHHHHHHHHHHhcCcc----eeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcc
Confidence 566778888999999974 15555555665544433 33222 4344 4433 333321100000 0
Q ss_pred HHHhcC----CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCc
Q 037063 243 SSKKRG----ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGW 313 (588)
Q Consensus 243 ~a~~~G----~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~ 313 (588)
.-+..| ..+..||.. |.++|+.+|+. ++...|.+.-.+-.-|++.| +..+ ++|++|++
T Consensus 176 s~~~fgp~~P~~~~~v~Y~------d~eale~~l~~-------~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynv 242 (427)
T KOG1402|consen 176 SWDGFGPFLPGVVDKVPYG------DAEALEVALKS-------PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNV 242 (427)
T ss_pred hhhccCCCCCCcceeeccC------CHHHHHHHhcC-------CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcE
Confidence 001111 113333332 67899999973 78899999999999999998 5567 89999999
Q ss_pred EEEEeCCCcCC---CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccc
Q 037063 314 HVLLDATALGS---KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIE 390 (588)
Q Consensus 314 ~vvvDaa~~~~---~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~ 390 (588)
++|.|..|..- -.+-..+.+..+||+++. -|.++.+-.-+.+++..++++-.++|...|. +
T Consensus 243 l~I~DEvQTGl~RTGk~la~d~env~PDivil--gKalSGG~~Pvsavl~~~~im~~~~pgeHgs--T------------ 306 (427)
T KOG1402|consen 243 LLIADEVQTGLARTGKLLACDYENVRPDIVIL--GKALSGGVYPVSAVLADDDIMLNIKPGEHGS--T------------ 306 (427)
T ss_pred EEEehhhhhcccccCcEEEeehhhcCCCeEEE--eccccCCeeeeEEEEecHHHHhccCCCcccc--c------------
Confidence 99999998762 113344556667999885 4755422333677777888776666554431 0
Q ss_pred cccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCC
Q 037063 391 LETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVM 469 (588)
Q Consensus 391 ~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~ 469 (588)
| .| |..+. +...++|+.+.+ +++.+|...|-..++++|.+|+-+ .|.+ +.+
T Consensus 307 --------y--gg--NpLg~---~vaiAalevi~e---ekL~era~~lG~~l~~~L~~l~~~-----~p~~v~~V----- 358 (427)
T KOG1402|consen 307 --------Y--GG--NPLGC---AVAIAALEVIVE---EKLVERAAKLGEILRDQLNKLQKK-----FPHVVKEV----- 358 (427)
T ss_pred --------c--CC--ChHHH---HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcccc-----ccchhhee-----
Confidence 0 11 11221 334478888876 889999999999999999998432 1221 111
Q ss_pred CCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC
Q 037063 470 FDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL 549 (588)
Q Consensus 470 ~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~ 549 (588)
..||-+.++.+...+-...+.-.+.-.+..+|...-+- .| ..||+++-..
T Consensus 359 RGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkpt-----------------------------H~-~IiRfaPPL~ 408 (427)
T KOG1402|consen 359 RGRGLLNAIVINPSKTSGQDAWDVCLALKENGLLAKPT-----------------------------HG-NIIRFAPPLV 408 (427)
T ss_pred eccceEEEEEeccccccchhHHHHHHcccccccccCCC-----------------------------CC-CeEEecCCcc
Confidence 13454554444322111122223333444455432211 11 1899999999
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 037063 550 TNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 550 ~t~eDv~~li~~l~~~l~ 567 (588)
-+++|++.-+++|.+.+.
T Consensus 409 I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 409 ISEEDLREGIEAIEKTIA 426 (427)
T ss_pred cCHHHHHHHHHHHHHHhc
Confidence 999999999999998764
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-06 Score=86.63 Aligned_cols=342 Identities=15% Similarity=0.124 Sum_probs=196.5
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|+++.-|||.-|. |-.-+.+.+++..++ ..++ |+.... ..+-+
T Consensus 46 De~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl-~~l~----------------------H~t~~~--------~~~pi 94 (442)
T KOG1404|consen 46 DEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQL-KKLY----------------------HTTSGY--------LNPPI 94 (442)
T ss_pred cCCCceeehhhCCeEEEEcCCCChHHHHHHHHhh-hhhE----------------------Eeeccc--------cCCcH
Confidence 4578889997654 555667777765554 2222 111110 02233
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccC-
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSKKRGARVSSAEFAW- 258 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~- 258 (588)
.+.-+.+++.|=.+- ..+.|++++++|..+++.....-.|. +++ ....||.++...+ ...|.....-+++.
T Consensus 95 ~~~Ae~L~s~~P~~l--~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~----glt~~~~~k~~~~~~ 168 (442)
T KOG1404|consen 95 HDLAEALVSKLPGDL--KVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTL----GLTGLSPWKQNFPGV 168 (442)
T ss_pred HHHHHHHHHhCCCCc--eEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhc----ccccCCcccccCCCC
Confidence 455666666664433 34999999999998877654322233 244 5566665443221 11222211111110
Q ss_pred ---------CC--------C--ccCH----HHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHH
Q 037063 259 ---------PN--------L--RIHS----GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAE 310 (588)
Q Consensus 259 ---------~~--------~--~i~~----e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~ 310 (588)
|+ . .--. ++++..|. .........++...++-.-|.+.+ ++.+ +.|++
T Consensus 169 ~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~----~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k 244 (442)
T KOG1404|consen 169 ASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLIL----YDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRK 244 (442)
T ss_pred CCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHH----hcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHH
Confidence 00 0 0001 33444444 223345677888888888898876 5557 88999
Q ss_pred cCcEEEEeCCCcC-CCCCCCCCCC--CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCc
Q 037063 311 KGWHVLLDATALG-SKDMDTLGLS--LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSE 387 (588)
Q Consensus 311 ~g~~vvvDaa~~~-~~d~~~l~l~--~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~ 387 (588)
+|.++|.|.+|.. +..-.-+++. ..-||++ +.-|-+|. ..-+|+++..+++.+.+......
T Consensus 245 ~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIv--TmAKgiGn-G~Pl~AVvtt~EIa~v~~~~~~~------------- 308 (442)
T KOG1404|consen 245 RGGLFIADEVQTGFGRTGHMWGFESHGVVPDIV--TMAKGIGN-GFPLGAVVTTPEIADVLNQKSSH------------- 308 (442)
T ss_pred cCCEEEehhhhhccccccccccccccCCCccHH--HHHhhccC-CCcceeeecCHHHHHHHHhcccc-------------
Confidence 9999999999765 2100111222 2236754 56787764 35589999999988776543311
Q ss_pred ccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCC
Q 037063 388 IIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPK 467 (588)
Q Consensus 388 ~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~ 467 (588)
|..-|..++.. ++-.+.|+.+++ +++.++......+|.++|.+++.. -.|+|+-
T Consensus 309 -----------fnTyggnP~a~----avg~aVL~Vike---e~LqE~aa~vG~yl~~~l~~l~d~--------h~iIGdV 362 (442)
T KOG1404|consen 309 -----------FNTYGGNPVAC----AVGLAVLKVIKE---ENLQENAAEVGSYLLEKLAALKDK--------HPIIGDV 362 (442)
T ss_pred -----------ccccCCCchhH----HHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHhhc--------CCceeec
Confidence 00111112222 222355666665 899999999999999999998533 2234431
Q ss_pred CCCCcccEEEEEeecCCCCCcCH-----HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEE
Q 037063 468 VMFDRGPSLAFNVFDWNGTRIDP-----ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVV 542 (588)
Q Consensus 468 ~~~~rg~iv~f~~~~~~g~~i~~-----~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~v 542 (588)
.-+|-++...+.+.+-+...+ ..+-+...+.|+.+.-|.. .|. ++
T Consensus 363 --RG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i---------------------------~G~-vf 412 (442)
T KOG1404|consen 363 --RGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGI---------------------------HGN-VF 412 (442)
T ss_pred --ccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccc---------------------------cce-EE
Confidence 134556666665433122222 2245666778998865522 232 99
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q 037063 543 TAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 543 RvSlg~~~t~eDv~~li~~l 562 (588)
||++-..-|.|||+.+++..
T Consensus 413 riaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 413 RIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred EecCCeeccHHHHHHHHHHH
Confidence 99999999999997777754
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.8e-06 Score=84.35 Aligned_cols=311 Identities=17% Similarity=0.119 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHhC----CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 181 ESKIRKRIMDFMN----ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 181 ~~~~r~~ia~~lg----a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++-+|+.+|+|+. .+.+..+|.+|.|++.|++.++..+--.+.+-|+++..-.. .+.. .+ ...|+..+..-+
T Consensus 115 v~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYP-LYsA--ti-~l~~~~~v~YyL 190 (475)
T KOG0258|consen 115 VPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYP-LYSA--TI-SLLGGTQVPYYL 190 (475)
T ss_pred ChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCc-hhHH--HH-HHhCCcccceee
Confidence 4578999999884 22233359999999999999988773333344765543322 2322 12 334665555545
Q ss_pred cC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCC----------C
Q 037063 257 AW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYM---WM-SVAAEKGWHVLLDAT----------A 321 (588)
Q Consensus 257 ~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa----------~ 321 (588)
+. .++.+|.++|++.+++. .+.-++++.++-++-|+||..+.-+ .| ..|++.|+.++-|.+ .
T Consensus 191 dEe~~W~ld~~el~~~~~eA---~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~sk 267 (475)
T KOG0258|consen 191 DEESNWSLDVAELERSVDEA---RKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSK 267 (475)
T ss_pred ccccCCCCCHHHHHHHHHHH---hccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcc
Confidence 43 45679999999999852 2445788888889999999998754 45 789999999999986 1
Q ss_pred cCC--CCCCCCCCCCCCC-c---EEEeccCc-cCC-CCCCceEEEEEeC---cchhcc--------cCCCCCCCceEeee
Q 037063 322 LGS--KDMDTLGLSLFKP-D---FLICSFYK-IFG-ENPSGFGCLFVKK---SSASVL--------SGSTSSVSTIMGIE 382 (588)
Q Consensus 322 ~~~--~d~~~l~l~~~~~-D---~vv~S~~K-~~G-~~P~G~G~L~v~~---~~~~~l--------~~~~~g~~g~v~~~ 382 (588)
+-. +-+..++ ...+ . +-..|.+| .+| +++. .|.+=+-+ +..+.+ -+...| +...
T Consensus 268 FhSfKKvl~emg--~~~~~~v~L~SfhSvSKGy~gECG~R-GGYmEv~n~~prv~~qi~Kl~si~lc~~V~G---Q~~v- 340 (475)
T KOG0258|consen 268 FHSFKKVLHEMG--NPYPDNVSLASFHSVSKGYMGECGQR-GGYMESLNRDPRVKQQIKKLASIKLCPQVSG---QKLV- 340 (475)
T ss_pred hHhHHHHHHHhc--CccCCceEEEeeecccccceeeeccc-CCeeecccCChhHHHHHHHHHhhhhcCCccc---hhhh-
Confidence 111 0011222 1112 2 22336667 444 2133 35543321 111111 111111 1000
Q ss_pred cCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEE
Q 037063 383 PSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVR 462 (588)
Q Consensus 383 ~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~ 462 (588)
++.-.+. ..|.+++... .. + .+.|...++.-++.+.+.+.++ +++.
T Consensus 341 -------dl~VnPP----~Pgd~Sy~~~---~~---------E--kd~il~~l~~ra~l~~~~~ns~---------~gi~ 386 (475)
T KOG0258|consen 341 -------DLVVNPP----KPGDPSYDLF---SS---------E--KDGILSSLRSRAKLTEDAFNSL---------EGIS 386 (475)
T ss_pred -------ceecCCC----CCCCcchhhh---hh---------h--hHhHHHHHHHHhHHHHHHHhhc---------Ccee
Confidence 0000000 2333333322 11 1 2556666666777888888875 6777
Q ss_pred EeCCCCCCCcccEEEEEeec--------CCCCCcCHHH--HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCC
Q 037063 463 IYGPKVMFDRGPSLAFNVFD--------WNGTRIDPAL--VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGT 532 (588)
Q Consensus 463 i~~p~~~~~rg~iv~f~~~~--------~~g~~i~~~~--v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~ 532 (588)
... .+|.+..|.-.. .+-..+.|+. ..++|+.-||++-+|+- +. .
T Consensus 387 cn~-----~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSG----FG------------Q---- 441 (475)
T KOG0258|consen 387 CNP-----VQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSG----FG------------Q---- 441 (475)
T ss_pred ecc-----CccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCC----CC------------C----
Confidence 654 467888874211 0111144554 36889999999988731 11 1
Q ss_pred CCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 533 NETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 533 ~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
..|.-.+|.++=.-. .+=|+++-+|=++|+++
T Consensus 442 ---~~GtyH~R~TiLp~~-~~~i~~~~~fH~~f~~~ 473 (475)
T KOG0258|consen 442 ---KEGTYHFRTTILPPG-LEIIEKFKKFHAEFMDE 473 (475)
T ss_pred ---CCceeEEEEeecCch-hHHHHHHHHHHHHHHHh
Confidence 134348999875444 37788888887777764
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.4e-07 Score=94.10 Aligned_cols=174 Identities=15% Similarity=0.142 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHh-----CC--CCCCC-----eEE-EcCC-CchhHHHHHHHHHHh
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAES-----YP--FYSNP-----RLL-TVYD-HENEAAALMIESSKK 246 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s-----~~--~~~gd-----~ll-~~~e-~~s~~~~~~~~~a~~ 246 (588)
+.++-.++-+..|-+++ -+-||++|++-+.-.+... +| -..|- -|+ ++.+ |+| + ...|..
T Consensus 143 E~~vl~km~~ivGw~~~-~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYS--i---~kaAa~ 216 (510)
T KOG0629|consen 143 EEEVLAKMREIVGWEEG-GDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYS--I---KKAAAF 216 (510)
T ss_pred hHHHHHHHHHHhCCCCC-CCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhh--H---HHHHHH
Confidence 44566666777888764 2378888776443222221 11 01121 133 4444 433 2 444555
Q ss_pred cC---CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCc
Q 037063 247 RG---ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATAL 322 (588)
Q Consensus 247 ~G---~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~ 322 (588)
.| -.++.|+.+ +.|.+.+++|++.|.+. +.+...+-+|..++.+++.|+.-|++.| ++|++|+.+++||||-.
T Consensus 217 lg~gtd~c~~v~t~-e~Gkm~~~dLe~kile~--k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwG 293 (510)
T KOG0629|consen 217 LGLGTDHCIKVKTD-ERGKMIPDDLEKKILEA--KAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWG 293 (510)
T ss_pred hccCCceeEEeccc-ccCccchHHHHHHHHHH--HhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccc
Confidence 56 688888888 88999999999999742 1222347899999999999999999999 99999999999999954
Q ss_pred CCCCC---CCCCCC-CCCCcEEEeccCccCCCCCCceEEEEEeCcc
Q 037063 323 GSKDM---DTLGLS-LFKPDFLICSFYKIFGENPSGFGCLFVKKSS 364 (588)
Q Consensus 323 ~~~d~---~~l~l~-~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~ 364 (588)
.+.-+ ...-++ ..++|.+..+.||+.|. |.-+++++.|.+-
T Consensus 294 GglLmS~k~R~kl~Giera~SvtwnpHK~~ga-plqCsa~l~r~~g 338 (510)
T KOG0629|consen 294 GGLLMSRKHRHKLTGIERANSVTWNPHKLMGA-PLQCSAFLTREEG 338 (510)
T ss_pred cccccChhhHhhccCccccCceeecHHHhhcC-cchhhHHHHHHHH
Confidence 43101 111122 34589999999999997 8889998888753
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-06 Score=86.87 Aligned_cols=309 Identities=15% Similarity=0.093 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
++.-+..++||+|+|+. ..|++..|.+. +.-++-+| -+.||-+..+....=.+..++ ++. .-.+.+...
T Consensus 139 DvHldlE~~iakF~G~E---~aivYs~gF~t-i~S~ipaf-sKrGDIi~~de~~nfaIq~Gl-qlS---RS~i~~Fkh-- 207 (467)
T KOG1358|consen 139 DVHLDLEKRIAKFMGTE---DAIVYSYGFST-IESAIPAF-SKRGDIIFVDEAVNFAIQKGL-QLS---RSTISYFKH-- 207 (467)
T ss_pred eeecccHHHHHHhhCCc---ceeeeccccch-hhhcchhh-hccCcEEEEehhhhHHHHHHH-hhh---hheeEEecC--
Confidence 34457889999999994 24777777654 35555666 577887665433221133332 222 223444433
Q ss_pred CCCccCHHHHHHHHhhhc-cccCCC---c-ceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC-------
Q 037063 259 PNLRIHSGKLMKKIVGKR-KKKKKK---K-RGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK------- 325 (588)
Q Consensus 259 ~~~~i~~e~l~~~i~~~~-~~~~~~---~-t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~------- 325 (588)
.|++++++.+.+.- +..+.+ . .+.+++....-.+|.+.|+.+| ++..++...|++|..-+.|.
T Consensus 208 ----ndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrG 283 (467)
T KOG1358|consen 208 ----NDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRG 283 (467)
T ss_pred ----CCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCcc
Confidence 37788888876411 111112 2 5678888889999999999999 99999999999999844431
Q ss_pred CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 326 DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 326 d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
-.+..+.+...+|.+++|.--.++. |.|+... +..+-..+.. .| .|. .| -..+|
T Consensus 284 vteH~~v~~~~iDiv~~sm~~alas---~GgFc~G-~~~i~~hQrL-Sg-~~Y-------------------~f-SAslP 337 (467)
T KOG1358|consen 284 VTEHFGVPITDIDIVTASMETALAS---GGGFCAG-KSFIADHQRL-SG-SGY-------------------CF-SASLP 337 (467)
T ss_pred ccccCCCCccceeeeeecccccccc---cCceeec-ceeeEeeeec-cc-cce-------------------ee-eccCc
Confidence 0233444445589999998876662 4466666 3333212222 12 011 12 12234
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCC
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNG 485 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g 485 (588)
++.. .+...+++..++- ..+-+-++.....+...|+. ..++.+.+. .-+|++-+.+....|
T Consensus 338 p~la----~aa~~ai~i~~~~--p~~~~~L~~k~~~~H~~l~~---------~s~~~v~~~----~~SPi~hl~l~~~~~ 398 (467)
T KOG1358|consen 338 PYLA----GAAIKAILIEEWN--PEIVQPLRAKVAKFHAALSS---------NSGFIVSGS----PESPIIHLQLERSYG 398 (467)
T ss_pred hhhh----hhHHHHHHHHhhC--cchhhhhhccccccchhhhc---------CCceEEecC----cCCceeeeeeccccc
Confidence 4433 2223455544442 22444455555566666665 345777664 346787777766443
Q ss_pred CCcC-----HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHH
Q 037063 486 TRID-----PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 486 ~~i~-----~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~ 560 (588)
..-. -+.+.+.+.+ |+.+-. +..+... ....-.+.|||.+....++||++++.+
T Consensus 399 s~e~e~~lL~eivd~~i~~-~~ll~~----------------a~~~~~~----e~~~~~pSiri~~~a~~seeel~ra~~ 457 (467)
T KOG1358|consen 399 SREKEEKLLEEIVDKCIAE-GVLLTR----------------AKYLEKL----ERCPIPPSIRICVSAGMSEEELERAAE 457 (467)
T ss_pred chHHHHHHHHHHHHHHHhh-cceehh----------------hhhhhhc----ccCCCCCcEEEEEeCCCCHHHHHHHHH
Confidence 2211 1123333333 554421 1111111 000112389999999999999999999
Q ss_pred HHHHhhhh
Q 037063 561 FVSRFLDA 568 (588)
Q Consensus 561 ~l~~~l~~ 568 (588)
.|++...+
T Consensus 458 ~ik~~~~~ 465 (467)
T KOG1358|consen 458 LIKEVASA 465 (467)
T ss_pred HHHHHHHh
Confidence 99986543
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-06 Score=89.38 Aligned_cols=268 Identities=12% Similarity=0.092 Sum_probs=151.6
Q ss_pred CCCCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|.++..|+|..+ .|--.+.+.+++.+.+....+.++ . . ...+..
T Consensus 12 d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~------------------------~-~-----~~~~~~ 61 (339)
T PF00202_consen 12 DVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSF------------------------S-G-----FTHPEA 61 (339)
T ss_dssp ETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCST------------------------T-T-----SEEHHH
T ss_pred ECCCCEEEECCCCccceecCCCccccchhHHHHhhhcccccc------------------------c-c-----eeccch
Confidence 346888999863 355667777777655432111110 0 0 014556
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC------CCCCCe-EE-EcCCCchhHHHHHH-----HHHHhc-
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP------FYSNPR-LL-TVYDHENEAAALMI-----ESSKKR- 247 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~------~~~gd~-ll-~~~e~~s~~~~~~~-----~~a~~~- 247 (588)
.++-+++.+.++- .-+.|.|+.++++|+..++.... ..++.. |+ ....||......+. ...+..
T Consensus 62 ~~la~~L~~~~p~--~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~ 139 (339)
T PF00202_consen 62 AELAEKLAELFPG--GLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFG 139 (339)
T ss_dssp HHHHHHHHHHSST--TEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTC
T ss_pred hhhhhhhhhcccc--ccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCcccccccc
Confidence 6888888888833 22469999999999988777552 234443 55 55667653322211 011111
Q ss_pred --CCEEEEEeccCCCC----ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEE
Q 037063 248 --GARVSSAEFAWPNL----RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVL 316 (588)
Q Consensus 248 --G~~v~~v~~~~~~~----~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vv 316 (588)
...+..+|.+.... .-..+++++.+.+ ...++...|++.-+....|.+.+ ++.| ++|+++|+++|
T Consensus 140 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI 215 (339)
T PF00202_consen 140 PLYPGVVFVPFPDPAADEEEQACLNALEELIAA----LNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLI 215 (339)
T ss_dssp SSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHH----HHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEE
T ss_pred ccccccccccCCccchhhhHHHHHHHHHHHHHh----hcCCcEEEEEEeccccccCccccccchhhehccccccccccee
Confidence 12456666641100 0011223333331 11256788888888877887765 4557 89999999999
Q ss_pred EeCCCcC-C---C--CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccc
Q 037063 317 LDATALG-S---K--DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIE 390 (588)
Q Consensus 317 vDaa~~~-~---~--d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~ 390 (588)
+|.++.. + . -....+ ..||+++++ |.++.+ .-+|++++++++.+.+.+...+
T Consensus 216 ~DEV~tG~gRtG~~~a~~~~g---v~PDiv~~g--K~l~gG-~p~sav~~~~~i~~~~~~~~~~---------------- 273 (339)
T PF00202_consen 216 ADEVQTGFGRTGKFFASEHYG---VDPDIVTFG--KGLGGG-LPISAVLGSEEIMEAFQPGSHG---------------- 273 (339)
T ss_dssp EEETTTTTTTTSSSSGHHHHT---SSSSEEEEE--GGGGTT-SSEEEEEEEHHHHTTSCTTSST----------------
T ss_pred cccccccccccCCccceeccc---ccCcccccc--cchhhh-hhcccccccchhhccccccccc----------------
Confidence 9999764 2 1 012223 349999987 966532 5589999999987766443322
Q ss_pred cccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcc
Q 037063 391 LETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNL 449 (588)
Q Consensus 391 ~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L 449 (588)
+|..-..+ ..++..+.|+.+++ +++.++++.+.+++.+.|.+|
T Consensus 274 ------------~T~~g~p~-~~aaa~~~l~~~~~---~~~~~~~~~~g~~l~~~L~~l 316 (339)
T PF00202_consen 274 ------------STFGGNPL-SCAAALATLEILEE---EDLLERVRELGERLREGLREL 316 (339)
T ss_dssp ------------CTTTT-HH-HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHH
T ss_pred ------------cccccchH-hhhhhhhHHHhhcc---HHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 12344466666665 446677777777777777765
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.4e-05 Score=86.79 Aligned_cols=214 Identities=16% Similarity=0.094 Sum_probs=127.4
Q ss_pred CcceEEEEeCC-CCCCCccCC----HHHH-HHHHHcCcEEEEeCCCcC-C---C--CCCCCCCCCCCCcEEEeccCccCC
Q 037063 282 KKRGLFVFPLQ-SKVTGARYS----YMWM-SVAAEKGWHVLLDATALG-S---K--DMDTLGLSLFKPDFLICSFYKIFG 349 (588)
Q Consensus 282 ~~t~Lv~~~~~-sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~~-~---~--d~~~l~l~~~~~D~vv~S~~K~~G 349 (588)
++...|++.-+ ...-|.+.| ++.| ++|+++|+++|+|.++.. + . -.+.+| ..||++++ -|.++
T Consensus 583 ~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~g---v~PDIi~~--gKgLt 657 (817)
T PLN02974 583 GHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLG---CKPDIACY--AKLLT 657 (817)
T ss_pred CCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcC---CCCCEEee--ccccc
Confidence 45677777663 666788876 4447 899999999999998554 2 1 122333 34998875 48655
Q ss_pred CCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhC-H
Q 037063 350 ENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALG-L 428 (588)
Q Consensus 350 ~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G-~ 428 (588)
.+=.-+|++++++++.+.+...... + .|-..+|..-..+ ..++..+.|+.+++.+ .
T Consensus 658 gG~~Plaa~l~~~~I~~~f~~~~~~--~--------------------~~~hg~Ty~gnpl-~cAaala~L~~~~~~~~~ 714 (817)
T PLN02974 658 GGLVPLAATLATEEVFEAFRGPSKL--D--------------------ALLHGHSYTAHPM-GCAAAAKALQWYKDPSTN 714 (817)
T ss_pred CCCCccEEEEEcHHHHHhhcccccc--C--------------------CcccCCCCCcCHH-HHHHHHHHHHHHHcccHH
Confidence 2112379999999987765311000 0 0001122222222 1244446677776643 3
Q ss_pred HHHHHHHHHHHHHHHHHH-Hccc-CCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCC-CCcC---HHHHHHHHH-hCC
Q 037063 429 ILISNRARYLINWLANAL-MNLH-HPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNG-TRID---PALVQKLAD-RHN 501 (588)
Q Consensus 429 ~~i~~r~~~L~~~l~~~L-~~L~-h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g-~~i~---~~~v~~~l~-~~g 501 (588)
+++.++...+..++.+.| ..+. |+. +..|+ ..|-++++.+.+..+ +... ...+.+.+. ++|
T Consensus 715 ~~l~~~~~~l~~~l~~~l~~~l~~~p~----V~~VR--------g~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~G 782 (817)
T PLN02974 715 PNLIPPGSRLRELWDEELVRAISSLPN----VERVV--------SLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDG 782 (817)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC----eeEEE--------eeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCC
Confidence 466677777777666666 2221 221 11222 346778887764322 1111 234555555 899
Q ss_pred cEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 502 ISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 502 I~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
|.++.. | .+||+.+.+.++.||++++++.|.+-|
T Consensus 783 l~~r~~------------------------------G-nvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 783 IYARPL------------------------------G-NVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred EEEEec------------------------------C-CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 998752 1 189999999999999999999988755
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.4e-07 Score=89.77 Aligned_cols=159 Identities=15% Similarity=0.110 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCC--CCC---eEEEcCCCchhHHHHHHHHHHhcCCEEE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFY--SNP---RLLTVYDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~--~gd---~ll~~~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
.++.+.+|+.=...=|+-.+++-|||..|+|+.++.++.++.-. +.. +|+...+|.+ ++....++.+. ....
T Consensus 46 ~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~-~Y~~qt~~f~s--~~y~ 122 (363)
T PF04864_consen 46 PELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYS-SYPEQTDFFDS--RLYK 122 (363)
T ss_dssp HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--C-HHHHHCCCT-B--TTEE
T ss_pred HHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCcc-chHHHHHhccc--cCcc
Confidence 55655565555555567777788999999999999999887422 222 2888888877 44332222221 1122
Q ss_pred EEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHHHHHHHcCcEEEEeCC----CcCCCCCC
Q 037063 253 SAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWMSVAAEKGWHVLLDAT----ALGSKDMD 328 (588)
Q Consensus 253 ~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I~~a~~~g~~vvvDaa----~~~~~d~~ 328 (588)
+..-. .... + .....+-+=.++.++||.|.+-- ..++..+..+|.|-| |+.|+ ..
T Consensus 123 w~Gda--------~~~~---~-----~~~~~~~IElVTSPNNPDG~lr~----~V~~g~~~k~I~D~AYYWPhyTpI-~~ 181 (363)
T PF04864_consen 123 WAGDA--------SNFK---N-----SDNPSPYIELVTSPNNPDGQLRE----AVLNGSSGKVIHDLAYYWPHYTPI-TA 181 (363)
T ss_dssp EEEEC--------CCGT---T------S-CCGEEEEEESS-TTT----------SSTTTEEEEEEE-TT-STTTS----S
T ss_pred ccccH--------Hhhc---c-----CCCCCCeEEEEeCCCCCcccccc----hhcCCCCcceeeeeeeeccccccc-CC
Confidence 22110 0111 1 01145667788999999998642 234555677899999 55554 23
Q ss_pred CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcch
Q 037063 329 TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSA 365 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~ 365 (588)
+.| -|++.+++.|+-|.+.+++|+.+||++.+
T Consensus 182 ~aD-----~DiMLFT~SK~TGHAGSR~GWAlVKD~~V 213 (363)
T PF04864_consen 182 PAD-----HDIMLFTLSKLTGHAGSRFGWALVKDEEV 213 (363)
T ss_dssp -B-------SEEEEEHHHHCS-GGG-EEEEEES-HHH
T ss_pred CCC-----CceEEEEEecccCccccccceeeecCHHH
Confidence 455 69999999999997778899999998754
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.9e-05 Score=80.81 Aligned_cols=300 Identities=17% Similarity=0.155 Sum_probs=179.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHH----HHHHHHHhCCCCCCCe---E--EEcCCCchhHHHHHHHHHHhcC
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSS----AFKLLAESYPFYSNPR---L--LTVYDHENEAAALMIESSKKRG 248 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~----al~lv~~s~~~~~gd~---l--l~~~e~~s~~~~~~~~~a~~~G 248 (588)
.++..++.+.+.++-|-| .+.|.+|+-+ +=-.++++|-...|+. | +...-|..|- ..|...|
T Consensus 581 ~~lf~~Le~~Lc~iTG~D----~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNP-----ASA~Mag 651 (1001)
T KOG2040|consen 581 QQLFTELEKDLCEITGFD----SFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNP-----ASAAMAG 651 (1001)
T ss_pred HHHHHHHHHHhheeeccc----ceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCCh-----hhHHhcC
Confidence 577788888888888874 3788876532 2234556664444442 3 3333343321 1234569
Q ss_pred CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccC-CHHHH-HHHHHcCcEEEEeCC---CcC
Q 037063 249 ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARY-SYMWM-SVAAEKGWHVLLDAT---ALG 323 (588)
Q Consensus 249 ~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~-pl~~I-~~a~~~g~~vvvDaa---~~~ 323 (588)
.+|+.|.++ .+|.||..+|+++.++ ..++-..+.++.+|+ .|+.- .++++ .+.|++|-.|.+|+| +-+
T Consensus 652 mkvvpV~~~-~~G~id~~dLk~kaek-----h~~~Laa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqV 724 (1001)
T KOG2040|consen 652 MKVVPVGCD-ANGNIDMVDLKAKAEK-----HKDNLAALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGANMNAQV 724 (1001)
T ss_pred CEEEEeecc-CCCCccHHHHHHHHHH-----hhhhhheeEEecccc-cccccccHHHHHHHHHhcCCEEEecCCCcccee
Confidence 999999998 8899999999998873 114455666666665 56664 58888 999999999999998 333
Q ss_pred CC-CCCCCCCCCCCCcEEEeccCccCCC----CCCceEEEEEeCcchhcccCC--CC----CC---CceEeeecCCCccc
Q 037063 324 SK-DMDTLGLSLFKPDFLICSFYKIFGE----NPSGFGCLFVKKSSASVLSGS--TS----SV---STIMGIEPSFSEII 389 (588)
Q Consensus 324 ~~-d~~~l~l~~~~~D~vv~S~~K~~G~----~P~G~G~L~v~~~~~~~l~~~--~~----g~---~g~v~~~~~~~~~~ 389 (588)
+. ...++| .|+.-...||-|.. +..|+|-+-||+-+..-|+.. .. ++ .|.|+..+
T Consensus 725 Glc~pGd~G-----aDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP------ 793 (1001)
T KOG2040|consen 725 GLCRPGDIG-----ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAP------ 793 (1001)
T ss_pred cccCCcccc-----ccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccC------
Confidence 41 234444 89999999996543 234677888888776655421 11 00 12222111
Q ss_pred ccccccccccccCCCCCccchhhHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCC
Q 037063 390 ELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL---GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGP 466 (588)
Q Consensus 390 ~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~---G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p 466 (588)
.|+..+.. ....+++.+ |+..-.+-..-.++|+.++|..- .+ + +|..
T Consensus 794 ------------~Gsa~ILp--------ISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h--------Yk-i-l~~~ 843 (1001)
T KOG2040|consen 794 ------------WGSALILP--------ISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH--------YK-I-LFRG 843 (1001)
T ss_pred ------------CCcceeeh--------hHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc--------cc-e-eEec
Confidence 12222222 233344444 45555555555678999998872 11 1 2221
Q ss_pred CCCCCcccEEE--EEe--ecCCC-CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccE
Q 037063 467 KVMFDRGPSLA--FNV--FDWNG-TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSV 541 (588)
Q Consensus 467 ~~~~~rg~iv~--f~~--~~~~g-~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~ 541 (588)
.++ .++ |.+ .+.+. ..|.+.+|.+.|..+|.+.-+=+. | + .| .
T Consensus 844 ----~~~-~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFHaPTmsw--P-------------V----------~g--t 891 (1001)
T KOG2040|consen 844 ----ENG-LVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFHAPTMSW--P-------------V----------AG--T 891 (1001)
T ss_pred ----CCc-ceeeeeeeechhhccccCCcHHHHHHHHHhccCCCCcccc--c-------------c----------CC--c
Confidence 111 333 222 12111 237788899999999886433111 0 0 11 4
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 542 VTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 542 vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
+=|-+---.+.+|+|||++++-.+.
T Consensus 892 LMIEPTESE~k~ElDRfcdAliSIr 916 (1001)
T KOG2040|consen 892 LMIEPTESEDKAELDRFCDALISIR 916 (1001)
T ss_pred eEeccCccccHHHHHHHHHHHHHHH
Confidence 5555555567899999999987654
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.8e-05 Score=82.28 Aligned_cols=315 Identities=12% Similarity=0.026 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEecCHH-HHHHHHHHhCCCCCC-CeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 180 LESKIRKRIMDFMNISEDDYTLVFTANQS-SAFKLLAESYPFYSN-PRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 180 ~~~~~r~~ia~~lga~~~e~~vvft~g~T-~al~lv~~s~~~~~g-d~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
+-..+-..+.+.+|+..- ...+.++-+| .++.+++.++.-++. +.|+ ...+|.+ .+. .+...|.+++.|+.
T Consensus 57 ltn~l~~d~~~~~G~~~~-~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkS-c~k----ai~~AGl~~~vV~~ 130 (389)
T PF05889_consen 57 LTNSLVLDALRLAGLRSV-KSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKS-CFK----AIERAGLEPVVVEN 130 (389)
T ss_dssp HHHHHHHHHHHHTTHTTH-CEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHH-HHH----HHHHTT-EEEEE-E
T ss_pred HHHHHHHHHHHHcCCccc-cceEEEecccccHHHHHHHHHhcccCCceEEEeeccccc-hHH----HHHhcCCeEEEeec
Confidence 334444455667788633 3466666666 456666666532343 4455 5667776 332 33556999999885
Q ss_pred c--CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC-HHHH-HHHHHcCcEEEEeCCCcCC--CCCCCC
Q 037063 257 A--WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS-YMWM-SVAAEKGWHVLLDATALGS--KDMDTL 330 (588)
Q Consensus 257 ~--~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p-l~~I-~~a~~~g~~vvvDaa~~~~--~d~~~l 330 (588)
. .+....|.+.+++.+++ ..+...|.++++.+-+.|...| +++| ++|+++|++.++..|-.+- .-+..+
T Consensus 131 ~~~~d~l~td~~~ie~~i~~-----~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i 205 (389)
T PF05889_consen 131 VLEGDELITDLEAIEAKIEE-----LGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLI 205 (389)
T ss_dssp EEETTEEEEHHHHHHHHHHH-----HCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHH
T ss_pred cCCCCeeeccHHHHHHHHHH-----hCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHH
Confidence 2 23345677888888863 1256799999999999999999 9999 9999999999999996661 000000
Q ss_pred C--CCCCCCcEEEeccCccCCCCCCceEEEEEeCc-chhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCc
Q 037063 331 G--LSLFKPDFLICSFYKIFGENPSGFGCLFVKKS-SASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407 (588)
Q Consensus 331 ~--l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~-~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~ 407 (588)
. ...-++|+++-|.-|=|-. |.|-+.+....+ .+..+...|.|. . + .|+
T Consensus 206 ~~a~~~GRvda~vqS~dkNF~V-PvGgai~As~~~~~i~~vs~~YpGR---a-------------------s---~sp-- 257 (389)
T PF05889_consen 206 QQAWRVGRVDAFVQSTDKNFMV-PVGGAIMASFDPSGILAVSKEYPGR---A-------------------S---ASP-- 257 (389)
T ss_dssp HHHHHHSTCSEEEEEHHHHHCE-ESSHEEEEESSHHHHHHHHHTSHSH---B-------------------T---SHH--
T ss_pred HHHHhcCCcceeeeecCCCEEe-cCCCcEEEecCHHHHHHHHHHhhhh---h-------------------h---ccc--
Confidence 0 0001367778888883333 667666665543 344444333321 0 0 011
Q ss_pred cchhhHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc-EEEEEeecC
Q 037063 408 SGVSSKLVECKGLDHADAL---GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP-SLAFNVFDW 483 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~---G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~-iv~f~~~~~ 483 (588)
....+..+..+ |+........++-.++.++|+++--.. +-++ +.. ++.+ .++|.+...
T Consensus 258 --------~ld~~itLl~LG~~g~~~ll~~r~~~f~~l~erl~~~aee~------~e~l-l~~---p~N~is~a~tl~~l 319 (389)
T PF05889_consen 258 --------SLDLFITLLSLGCTGYGALLKERKASFPYLKERLKKWAEEV------GERL-LET---PRNHISMAFTLDTL 319 (389)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TEEB-SSS---TT-SSEEEEE-TTC
T ss_pred --------chHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhh-cCC---CCCCeeEEEECccc
Confidence 01122222333 355566666667777777777642111 1222 221 1222 344555432
Q ss_pred CCCC-cCHHHHHHHHHhCCcE-eccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHH
Q 037063 484 NGTR-IDPALVQKLADRHNIS-LSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAF 561 (588)
Q Consensus 484 ~g~~-i~~~~v~~~l~~~gI~-v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~ 561 (588)
.... -+...+...|..+||. .| |-... +....+ .....-.+++.+.-.+-.+.||||.+++.
T Consensus 320 ~~~~~k~~~~lgs~Lf~R~VsG~R-vV~~~-~~~~ts--------------h~~~yp~~Ylt~AsaiG~~~eevd~~v~r 383 (389)
T PF05889_consen 320 YEISQKDGTFLGSMLFKRGVSGIR-VVTPG-GKKQTS--------------HSSNYPCPYLTAASAIGMTREEVDYFVKR 383 (389)
T ss_dssp CTCCSSHHHHHHHHHHHTTEESSE-EEETS-SCEEET--------------TSS--SSSEEEEEE-TT--HHHHHHHHHH
T ss_pred hhhccchhhhHHHHHHhCCcccce-eeccC-CCcccc--------------cCCCCchHHHHHHHHhCCCHHHHHHHHHH
Confidence 1100 1235677788888875 12 10000 000000 00001123888876777899999999999
Q ss_pred HHHhhh
Q 037063 562 VSRFLD 567 (588)
Q Consensus 562 l~~~l~ 567 (588)
|++.++
T Consensus 384 L~k~i~ 389 (389)
T PF05889_consen 384 LDKIIK 389 (389)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 998764
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.9e-05 Score=84.96 Aligned_cols=300 Identities=16% Similarity=0.156 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
+-.-+..|+++-|.+-.. .-+---+|+|-..++.++...++.+++++...|.+...-++-.++..|+++...+.
T Consensus 165 llNyQTmi~dlTGL~~aN--ASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~~---- 238 (1001)
T KOG2040|consen 165 LLNYQTMITDLTGLPMAN--ASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSDI---- 238 (1001)
T ss_pred HhhhHHhhhhccCCcccc--hhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhccccccceeEEecCH----
Confidence 335667788888876543 34444556666666666656666776665554444444444444555666444332
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC----CCCCCCCCCCC
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS----KDMDTLGLSLF 335 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~----~d~~~l~l~~~ 335 (588)
++...-. +...-+.+..+ ...|.+.|.+++ +.+++.|.++++- +.++. .....+|
T Consensus 239 -----~~~~~s~---------~~v~gvlvQYP-~t~G~i~d~~el~~~a~~~~s~vv~a-tDLLaLtiLrpPgefG---- 298 (1001)
T KOG2040|consen 239 -----KEADYSS---------KDVSGVLVQYP-DTEGSVLDFDELVELAHANGSLVVMA-TDLLALTILRPPGEFG---- 298 (1001)
T ss_pred -----HHhhccc---------cceeEEEEEcC-CCCCcccCHHHHHHHhhccCceEEEe-ehhhHHHccCChhhcC----
Confidence 2211111 22322333322 348999999999 9999999886653 33332 1134455
Q ss_pred CCcEEEeccCccCCCCCCc-----eEEEEEeCcchhcccCCCCCCCceEeeecCCCcc-cccccccc-cccccCCCCCcc
Q 037063 336 KPDFLICSFYKIFGENPSG-----FGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEI-IELETLDE-SSQSKFPESSIS 408 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G-----~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~-~~~~~~~~-~~f~e~GT~~~~ 408 (588)
+|+.++|.+. ||. |.| .||+.+++++...++-... |........... .-++.+.. -+- +-.|.|+.
T Consensus 299 -aDIavGSsQR-FGV-PlGYGGPHAaFfAv~~~l~R~mPGRii---GvtkD~~gk~a~RLALQTREQHIrR-DKATSNIC 371 (1001)
T KOG2040|consen 299 -ADIAVGSSQR-FGV-PLGYGGPHAAFFAVSESLVRMMPGRII---GVTKDALGKEAYRLALQTREQHIRR-DKATSNIC 371 (1001)
T ss_pred -ceeeeccccc-cCc-cccCCCchHHHHHHHHHHHhhCCCceE---eeeecccccHHHHHHHHHHHHHhhh-hccchhhh
Confidence 9999999998 554 444 5667777665544443332 222111100000 00111110 011 45688876
Q ss_pred chhhHHHHHHHHH--HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCC
Q 037063 409 GVSSKLVECKGLD--HADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGT 486 (588)
Q Consensus 409 ~~~~~~al~~aL~--~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~ 486 (588)
...++.|-..|.- +.-.-|++.|.+|+..++..|..+|+...| ++... . -=-.+.+.+..
T Consensus 372 TAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~agh----------el~~k-~---fFDTLkI~~~~---- 433 (1001)
T KOG2040|consen 372 TAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNAGH----------ELQHK-P---FFDTLKIRCGC---- 433 (1001)
T ss_pred HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhcch----------hhccc-c---ccceEEEEecC----
Confidence 6432222222221 112237999999999999999999997532 12111 0 00122333332
Q ss_pred CcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 487 RIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 487 ~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
+.+++...+.+++|-+|.- . .+ .|-+|+--..+.+||+.++..+.
T Consensus 434 --s~~~~l~rA~~~~iNlr~~-------------------e---------d~--tigvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 434 --SAEEVLDRAAKRQINLRLV-------------------E---------DG--TIGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred --cHHHHHHHHHhhcCceEEe-------------------e---------cC--ceEEeecccccHHHHHHHHHHHc
Confidence 3666666666677877642 1 33 78899999999999999988765
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0029 Score=64.49 Aligned_cols=313 Identities=14% Similarity=0.096 Sum_probs=167.6
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCC-----CCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFY-----SNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~-----~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.+++.+.+.||.+ | ++-|.-+-.|=+++...+ ++ ||.+.+ .+.-|+- .- +.-.+..|+.++.+++
T Consensus 83 ~L~~avkdifGfq---~-~iPthQGRgAE~Il~~i~-ik~~~~~pg~~~~~~sN~~Fd-TT---r~h~~~ng~~~~n~~~ 153 (471)
T COG3033 83 ALADAVKDIFGFQ---Y-TIPTHQGRGAENILIPIL-IKKGEQEPGSKMVAFSNYHFD-TT---RGHIQINGATPRNVYV 153 (471)
T ss_pred HHHHHHHHhcCce---e-eeeccCCccHHHHHHHHH-hhhccccCCccccccccceec-ch---hHHHHhcCCccccccc
Confidence 5667777788863 3 666777667766666555 44 454433 3333332 11 2333567888877766
Q ss_pred cCC---------CCccCHHHHHHHHhhhccccCCCcceEEEEeCC-CCCCCccCCHHH---H-HHHHHcCcEEEEeCCCc
Q 037063 257 AWP---------NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQ-SKVTGARYSYMW---M-SVAAEKGWHVLLDATAL 322 (588)
Q Consensus 257 ~~~---------~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~-sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~ 322 (588)
+.. .|.+|.+.|+++|++ ...++.-.|+++-. ++.-|+-.+++- + ++|++++++|+.|++-+
T Consensus 154 ~ea~d~~~~~pFKGd~D~~kLe~lide----vG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~Rf 229 (471)
T COG3033 154 DEAFDTEVKYPFKGNFDLEKLERLIDE----VGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARF 229 (471)
T ss_pred cccccccccCCCCCccCHHHHHHHHHH----hCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhh
Confidence 521 267899999999984 22244445554444 444666666555 5 88999999999999843
Q ss_pred CC----CCCCCCCCCC-----------CCCcEEEeccCc-cCCCCCCceEEEEEeCcch----hcccCCCCCCCceEeee
Q 037063 323 GS----KDMDTLGLSL-----------FKPDFLICSFYK-IFGENPSGFGCLFVKKSSA----SVLSGSTSSVSTIMGIE 382 (588)
Q Consensus 323 ~~----~d~~~l~l~~-----------~~~D~vv~S~~K-~~G~~P~G~G~L~v~~~~~----~~l~~~~~g~~g~v~~~ 382 (588)
+- +....-+... ..+|-++.|.-| .+- +.| |+|..+++.. ..++.... +
T Consensus 230 aENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lv--nmG-Gfl~~~D~~~fDvy~~~~~~~V-----~--- 298 (471)
T COG3033 230 AENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLV--NMG-GFLCFKDDSFFDVYEECRTLVV-----V--- 298 (471)
T ss_pred hhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeecccccee--ccc-cEEEecCccHHHHHHHHHhheE-----e---
Confidence 31 1122222221 237889999999 443 444 8888888732 22222110 0
Q ss_pred cCCCcccccccccccccccCCCCCccch--hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe
Q 037063 383 PSFSEIIELETLDESSQSKFPESSISGV--SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPL 460 (588)
Q Consensus 383 ~~~~~~~~~~~~~~~~f~e~GT~~~~~~--~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~ 460 (588)
.-|-+.+-+. .++.++..+|..- ...+-+..|+.+ .+||.++|.+. |
T Consensus 299 ------------------~eG~~tYGgl~GrdmealAvGL~e~--~~~~yl~~Rv~Q-v~YL~~~l~~~-------G--- 347 (471)
T COG3033 299 ------------------QEGFPTYGGLAGRDMEALAVGLREG--VNFDYLAHRVAQ-VQYLADGLEEA-------G--- 347 (471)
T ss_pred ------------------eccccccCcccchhHHHHHHHHHHh--cCcHHHHHHHHH-HHHHHHHHHhc-------C---
Confidence 0011111111 1234555555432 223555555544 57888999885 4
Q ss_pred EEEeCCCCCCCcccEEEEEe----ecCCCCCcCHHHH-HHHHHhCCcEe-ccccccCcccccchHHHHHHHHhhhcCCCC
Q 037063 461 VRIYGPKVMFDRGPSLAFNV----FDWNGTRIDPALV-QKLADRHNISL-SCGFLQNIFFSGEYEQERVRVLETRSGTNE 534 (588)
Q Consensus 461 v~i~~p~~~~~rg~iv~f~~----~~~~g~~i~~~~v-~~~l~~~gI~v-~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~ 534 (588)
|.|+.|. .|..+-++. +.-.-+.+..+.+ ..+..+.||.. ..|.+.-... ... +.
T Consensus 348 Vpi~~pa----GGHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd-----------~kt----g~ 408 (471)
T COG3033 348 VPIVQPA----GGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRD-----------PKT----GK 408 (471)
T ss_pred CeeEecC----CCceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccC-----------CCc----cc
Confidence 4455442 233333321 1111122333333 45567788863 3343221000 000 00
Q ss_pred C-cCCccEEEEecC-CCCCHHHHHHHHHHHHHhhhhh
Q 037063 535 T-RSGVSVVTAALG-CLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 535 ~-~~g~~~vRvSlg-~~~t~eDv~~li~~l~~~l~~~ 569 (588)
. ..-...||+.+- -.=|.+.+|.+++.++++.+..
T Consensus 409 q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~ 445 (471)
T COG3033 409 QHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENA 445 (471)
T ss_pred cCCCchheeeEeccccccchhHHHHHHHHHHHHHhcc
Confidence 0 011128999985 2236799999999999876543
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.3e-05 Score=74.44 Aligned_cols=169 Identities=13% Similarity=0.078 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE--cCCCchhHHHHHH-------HHHHhcCCEEE
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT--VYDHENEAAALMI-------ESSKKRGARVS 252 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~--~~e~~s~~~~~~~-------~~a~~~G~~v~ 252 (588)
+.+.+-.|+.||+...--..-| -++|+|+..++.++ ++|||+++. ..+|. ...-++ ...+..|++.+
T Consensus 68 dtLe~vyA~vf~aE~a~VRpq~-isGTHAI~~aLfg~-LRpgDell~i~G~PYD--TLeevIG~rg~~~gSL~dfgi~Y~ 143 (416)
T COG4100 68 DTLERVYAQVFGAEAALVRPQI-ISGTHAIACALFGI-LRPGDELLYITGSPYD--TLEEVIGLRGEGQGSLKDFGIKYK 143 (416)
T ss_pred hHHHHHHHHHhccccceeeeee-ecchhHHHHHHHhc-cCCCCeEEEecCCcch--hHHHHhccCCCCcccHHHhCccee
Confidence 4566677899998543212223 36789999999999 999999653 23332 121111 22455688999
Q ss_pred EEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCC----CCCCccCCHHHH-HHHHH--cCcEEEEeCC--CcC
Q 037063 253 SAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQS----KVTGARYSYMWM-SVAAE--KGWHVLLDAT--ALG 323 (588)
Q Consensus 253 ~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~s----n~tG~~~pl~~I-~~a~~--~g~~vvvDaa--~~~ 323 (588)
.+|+. .+|.+|.+.++..++ ++|+||.+.-.. .++=.+..+++| ...|+ .++.++||.| .++
T Consensus 144 ~v~Lt-~~gkiD~~~v~~~i~--------~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFv 214 (416)
T COG4100 144 AVPLT-ADGKIDIQAVKTAIS--------DRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFV 214 (416)
T ss_pred ecccc-cCCcccHHHHHHhcC--------ccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhh
Confidence 99998 789999999999998 899999886431 122222234444 55665 3899999998 344
Q ss_pred C-CCCCCCCCCCCCCcEEEeccCccCCCC-CCceEEEEEeCcchhcc
Q 037063 324 S-KDMDTLGLSLFKPDFLICSFYKIFGEN-PSGFGCLFVKKSSASVL 368 (588)
Q Consensus 324 ~-~d~~~l~l~~~~~D~vv~S~~K~~G~~-P~G~G~L~v~~~~~~~l 368 (588)
- +.....+ +|+++.|.=|--|.+ -+-.|++..|+++++..
T Consensus 215 E~~EPt~vG-----aDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~ 256 (416)
T COG4100 215 EEKEPTHVG-----ADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAA 256 (416)
T ss_pred hccCccccc-----hhhhccceeeCCCCceeeccceeechHHHHHhh
Confidence 2 2234455 999999999954410 12247888888877643
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0087 Score=62.23 Aligned_cols=173 Identities=13% Similarity=0.139 Sum_probs=100.9
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhC-C---CC-CCC--eEE-EcCCCchhHHHHHHHHHHhcCCEEEEE
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY-P---FY-SNP--RLL-TVYDHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~-~---~~-~gd--~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
++.+.|.+.++-.. -..|.|..++|+|+..++..- . .+ +-+ +++ ....||......|. .+ +..-...
T Consensus 102 ~l~~~l~~~~~~~~-~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals-~~---~~s~y~~ 176 (433)
T KOG1401|consen 102 ELEEVLSAVLGKGS-AERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALS-VT---GNSKYGL 176 (433)
T ss_pred HHHHHHHhcccCCC-ccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHH-hh---cccccCC
Confidence 56666666664321 124999999999987766532 1 11 112 255 56667764443332 11 2222222
Q ss_pred eccC--CC----CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCcC
Q 037063 255 EFAW--PN----LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATALG 323 (588)
Q Consensus 255 ~~~~--~~----~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~~ 323 (588)
++++ ++ ..-|++++++.+.. .+.....|++.-+.-.-|.+.. +..+ ++|+++|+++|.|..+-.
T Consensus 177 ~~~p~~p~v~~~~ynd~t~l~k~~~~-----h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG 251 (433)
T KOG1401|consen 177 PFDPIAPDVVTAEYNDSTALEKLFES-----HKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTG 251 (433)
T ss_pred CCCCCCCceeecccCCHHHHHHHHHh-----CCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhC
Confidence 2210 11 11368899999973 1123567777777655555543 2235 889999999999998764
Q ss_pred -CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCC
Q 037063 324 -SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGS 371 (588)
Q Consensus 324 -~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~ 371 (588)
+. ...-++ ..||+.. +-|.+|. ..-+|+..+++++.+.+.+.
T Consensus 252 ~gR~g~~~a~e~~~---~~PDI~t--~aK~L~g-GlPigA~~v~~kV~~~i~~~ 299 (433)
T KOG1401|consen 252 LGRLGYGWAQEYFG---VTPDITT--VAKPLGG-GLPIGATGVRDKVAEMISPG 299 (433)
T ss_pred ccccchHHHHHHhC---cCCccee--ehhhccC-CceeEEEeehHHHHhhcCCC
Confidence 20 011122 2388654 5586763 34589999999998877654
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0007 Score=67.54 Aligned_cols=250 Identities=16% Similarity=0.196 Sum_probs=137.1
Q ss_pred EEecCHHHHHHHHHHhCCCCCCCe-EEEcCCCchhHHHHHHHHHHhcC-CEEEEEec-cCCCCccCHHHHHHHHhhhccc
Q 037063 202 VFTANQSSAFKLLAESYPFYSNPR-LLTVYDHENEAAALMIESSKKRG-ARVSSAEF-AWPNLRIHSGKLMKKIVGKRKK 278 (588)
Q Consensus 202 vft~g~T~al~lv~~s~~~~~gd~-ll~~~e~~s~~~~~~~~~a~~~G-~~v~~v~~-~~~~~~i~~e~l~~~i~~~~~~ 278 (588)
+-+-++|.|+.+.++-+.-.-.++ |....+... .+ ..+.++.| .+|...+. +.++-.+|.+.+...|..
T Consensus 103 vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~-nH---~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~---- 174 (410)
T KOG1412|consen 103 VQSLSGTGALRIAADFLATFYNKNTVYVSNPTWE-NH---HAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLES---- 174 (410)
T ss_pred eeeccccchhhhhHHHHHHhcccceeEecCCchh-HH---HHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhh----
Confidence 344578899988877553111234 443332221 12 23456678 55555554 224556888888888872
Q ss_pred cCCCcceEEEEeCC-CCCCCccCCH-HH--H-HHHHHcCcEEEEeCC-CcCC---CCCCCC----CCCCCCC-cEEEecc
Q 037063 279 KKKKKRGLFVFPLQ-SKVTGARYSY-MW--M-SVAAEKGWHVLLDAT-ALGS---KDMDTL----GLSLFKP-DFLICSF 344 (588)
Q Consensus 279 ~~~~~t~Lv~~~~~-sn~tG~~~pl-~~--I-~~a~~~g~~vvvDaa-~~~~---~d~~~l----~l~~~~~-D~vv~S~ 344 (588)
.+...++++.++ .||||.-..- +| | +..++++.+.+.|-+ |... .+.+.. .++ .+. =|++-||
T Consensus 175 --APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~-~g~e~fv~QSF 251 (410)
T KOG1412|consen 175 --APEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVE-QGFELFVCQSF 251 (410)
T ss_pred --CCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHh-cCCeEEEEhhh
Confidence 145567777776 8999987543 34 4 667788999999987 3332 111111 011 112 3566699
Q ss_pred CccCCCCCCceEEEEE--eCcc-hhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHH
Q 037063 345 YKIFGENPSGFGCLFV--KKSS-ASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLD 421 (588)
Q Consensus 345 ~K~~G~~P~G~G~L~v--~~~~-~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~ 421 (588)
-|-||+...++|+|-+ ++.. +..+.... ..+ .+ - ....|+..+. -....-|.
T Consensus 252 aKNfGlYneRvGnltvv~~n~a~i~~v~SQl-------~lv----------iR----~-~~SNPPAyGA---rIV~kvL~ 306 (410)
T KOG1412|consen 252 AKNFGLYNERVGNLTVVVNNPAVIAGVKSQL-------TLV----------IR----S-NWSNPPAYGA---RIVHKVLS 306 (410)
T ss_pred hhhcccccccccceEEEecChhHHHHHHHHH-------HHH----------Hh----h-ccCCCcchhh---HHHHHHhc
Confidence 9988855667888764 3322 11111100 000 00 0 1111222121 01111111
Q ss_pred ---HHHHh--CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHH
Q 037063 422 ---HADAL--GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKL 496 (588)
Q Consensus 422 ---~l~~~--G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~ 496 (588)
..+++ .+..+..|+++++..|++.|..|+- |+-. ++. ..+.++++|. + +.+..|..+
T Consensus 307 tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~T-------PGtW---DHI-~~QiGMFSyT--G-----Ltp~qV~~l 368 (410)
T KOG1412|consen 307 TPELREQWIQSIKTMSSRIKKMRTALRDHLVALKT-------PGTW---DHI-TQQIGMFSYT--G-----LTPAQVDHL 368 (410)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CCcH---HHH-Hhhccceeec--C-----CCHHHHHHH
Confidence 11111 2688899999999999999999843 3210 000 1344555553 3 669999999
Q ss_pred HHhCCcEec
Q 037063 497 ADRHNISLS 505 (588)
Q Consensus 497 l~~~gI~v~ 505 (588)
.+.+.|.+.
T Consensus 369 i~~h~vyLl 377 (410)
T KOG1412|consen 369 IENHKVYLL 377 (410)
T ss_pred HHhceEEEe
Confidence 999999874
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.078 Score=53.03 Aligned_cols=353 Identities=14% Similarity=0.110 Sum_probs=188.3
Q ss_pred hccCCCCCCeeeecCCC----CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchh
Q 037063 103 DYFHLSLNNYVCFDYIG----HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEES 178 (588)
Q Consensus 103 ~f~~l~~~~~vyLD~a~----~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~ 178 (588)
+|. +|+++.-|||... .|-.-+.|+++....+.. +-.| +++. ..
T Consensus 39 QYm-fDE~g~~yLDCInNVaHvghchp~VV~A~~kQmat-~~tN--------------------------~RFl----hd 86 (452)
T KOG1403|consen 39 QYM-FDEEGTRYLDCINNVAHVGHCHPEVVRAGAKQMAT-ISTN--------------------------NRFL----HD 86 (452)
T ss_pred cee-eccCcccHHHHhhhhhhcccCCHHHHHHHHHHHhH-hccc--------------------------chhh----HH
Confidence 343 4667777887543 466677888876555421 1111 1111 15
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCC-CCeEEEcCCCchhHHHHHHHHHH---hcC---CE
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYS-NPRLLTVYDHENEAAALMIESSK---KRG---AR 250 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~-gd~ll~~~e~~s~~~~~~~~~a~---~~G---~~ 250 (588)
++++-+|+..+.+=+. ..+.|+.++++|..++++-.. +.. .|.|+.+.-||.-.- .+.++.- ..| .+
T Consensus 87 ~lv~cA~~l~stlPeL----svc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~-s~mE~SPYKF~~g~~v~k 161 (452)
T KOG1403|consen 87 ELVQCARTLTSTLPEL----SVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQ-SVMEVSPYKFNQGGGVAK 161 (452)
T ss_pred HHHHHHHHHhhcCCCc----eEEEEecCCchhhHHHHHHHHhhcccCceEEEechhcccee-eeeeccceeccCCCCcCC
Confidence 6777777777766554 358999999999988765331 333 344556655554111 1112211 112 12
Q ss_pred EEEEeccC-CC----------------CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH----H-HHH
Q 037063 251 VSSAEFAW-PN----------------LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW----M-SVA 308 (588)
Q Consensus 251 v~~v~~~~-~~----------------~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~----I-~~a 308 (588)
..+|.+.+ |+ +..-.+++++.+.. ...+......++....++--|.++|-.. + ...
T Consensus 162 pd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d--~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~V 239 (452)
T KOG1403|consen 162 PDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQD--QLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAV 239 (452)
T ss_pred CceeEecCCccccccccccccCCcccchhhhhhHHHHHHHH--HHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHH
Confidence 12222210 11 11223456665542 1122234445555566677899988655 4 556
Q ss_pred HHcCcEEEEeCCCcC----CCCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecC
Q 037063 309 AEKGWHVLLDATALG----SKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPS 384 (588)
Q Consensus 309 ~~~g~~vvvDaa~~~----~~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~ 384 (588)
+.+|-..|.|.+|.. +...=.+.+-.+-||++. .-|-.|- ..-++++...+++.+.+... |.-
T Consensus 240 r~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVt--mgKpmGN-GhPVa~VattkeIA~Af~at-----gv~----- 306 (452)
T KOG1403|consen 240 RSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVT--MGKPMGN-GHPVAAVATTKEIAQAFHAT-----GVE----- 306 (452)
T ss_pred hcCCCeEEeehhhhcccccchhhhhhhhhccccchhe--ecccCCC-CCeeeEEeccHHHHHHhccc-----cce-----
Confidence 778999999999755 110001111123367654 3464442 33478888888887655422 110
Q ss_pred CCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEe
Q 037063 385 FSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIY 464 (588)
Q Consensus 385 ~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~ 464 (588)
.|...|-.+++ ...++..++.+.-+++.+|..+.-++|...|.+++-. -+++
T Consensus 307 -------------YFNTyGGnPVs-------CAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~~k~k--------h~~I 358 (452)
T KOG1403|consen 307 -------------YFNTYGGNPVS-------CAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQK--------HECI 358 (452)
T ss_pred -------------ehhccCCCchh-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh--------ccce
Confidence 12122222222 2234444444444888999999999999888876422 2344
Q ss_pred CCCCCCCcc--cEEEEEee-cCCCCCcC----HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcC
Q 037063 465 GPKVMFDRG--PSLAFNVF-DWNGTRID----PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRS 537 (588)
Q Consensus 465 ~p~~~~~rg--~iv~f~~~-~~~g~~i~----~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~ 537 (588)
|+ -|| -++.+.+. |.+...-+ ...+.++-+.++|.+++-. .
T Consensus 359 GD----vRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDG----------------------------P 406 (452)
T KOG1403|consen 359 GD----VRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADG----------------------------P 406 (452)
T ss_pred ec----cccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCC----------------------------C
Confidence 53 233 23334332 22111111 1124455566788876420 2
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 538 GVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 538 g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
+...+.+-+-..-|+|+++.++..|.++|-
T Consensus 407 h~NilKiKPPmCFneena~e~v~~ld~iLT 436 (452)
T KOG1403|consen 407 HRNILKIKPPMCFNEENADEFVLGLDEILT 436 (452)
T ss_pred CCceeecCCCcccChhhHHHHHHHHHHHHH
Confidence 223677777667789999999999888765
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.063 Score=54.74 Aligned_cols=248 Identities=15% Similarity=0.130 Sum_probs=134.0
Q ss_pred eEEEec--CHHHHHHHHHHhCC-CCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec-cCCCCccCHHHHHHHHhhh
Q 037063 200 TLVFTA--NQSSAFKLLAESYP-FYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF-AWPNLRIHSGKLMKKIVGK 275 (588)
Q Consensus 200 ~vvft~--g~T~al~lv~~s~~-~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~-~~~~~~i~~e~l~~~i~~~ 275 (588)
.|+++. ++|.|+.+.++-+. +-++..|..+.+...|.. ..-+..|+.+....- +..+..+|.+.+.+.+.+
T Consensus 120 Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~----~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~- 194 (427)
T KOG1411|consen 120 RIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHK----NIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGE- 194 (427)
T ss_pred ceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccC----ccccccCcceeeeeeccccccccchHHHHHHHhc-
Confidence 466654 68899988776542 345556655444333222 222456888866654 335566787776666652
Q ss_pred ccccCCCcceEEEEeCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCC-CcCCCCCCCCCCCC--------CCCc-EEE
Q 037063 276 RKKKKKKKRGLFVFPLQSKVTGARYSYM---WM-SVAAEKGWHVLLDAT-ALGSKDMDTLGLSL--------FKPD-FLI 341 (588)
Q Consensus 276 ~~~~~~~~t~Lv~~~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa-~~~~~d~~~l~l~~--------~~~D-~vv 341 (588)
..+.--++.-...+|+||+--..+ +| ++.++.+..-++|.+ |... ..+++.+. .+.+ +++
T Consensus 195 ----~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfa--SG~~d~DA~avR~F~~~g~~~~la 268 (427)
T KOG1411|consen 195 ----APEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFA--SGDLDKDAQAVRLFVEDGHEILLA 268 (427)
T ss_pred ----CCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccc--cCCchhhHHHHHHHHHcCCceEee
Confidence 112333333444589999865443 36 888999999999988 3332 12222111 1123 455
Q ss_pred eccCccCCCCCCceEEEEEe-Cc--chhcc----cCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHH
Q 037063 342 CSFYKIFGENPSGFGCLFVK-KS--SASVL----SGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKL 414 (588)
Q Consensus 342 ~S~~K~~G~~P~G~G~L~v~-~~--~~~~l----~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~ 414 (588)
-|+-|-+|.....+|++-|= ++ ...++ +....+ + ..+|++.+....+
T Consensus 269 QSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRp---m-----------------------YSnPP~hGArIv~ 322 (427)
T KOG1411|consen 269 QSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRP---M-----------------------YSNPPLHGARIVA 322 (427)
T ss_pred hhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcc---c-----------------------ccCCCccchhhhh
Confidence 59999777545678887542 22 11111 111100 0 1122222210000
Q ss_pred HHHH--HH--HHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCH
Q 037063 415 VECK--GL--DHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDP 490 (588)
Q Consensus 415 al~~--aL--~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~ 490 (588)
-+.. .| +++.+ ++.+..|+..+++.|++.|.+. |.++-. .+. ..+-++++|. + +++
T Consensus 323 ~Il~d~~l~~~W~~e--vk~MadRi~~mR~~L~d~L~~~-------gs~~~W---~hI-~~QIGMF~fT--g-----l~p 382 (427)
T KOG1411|consen 323 TILSDPDLKNQWLGE--VKGMADRIISMRQQLFDALEKE-------GSPGNW---SHI-TKQIGMFCFT--G-----LNP 382 (427)
T ss_pred hccCChHHHHHHHHH--HHHHHHhhhhhHHHHhHHhhcC-------CCCccH---HHH-HHhhheeeec--C-----CCH
Confidence 0000 11 11222 5778899999999999999885 332200 000 1344555554 3 569
Q ss_pred HHHHHHHHhCCcEe
Q 037063 491 ALVQKLADRHNISL 504 (588)
Q Consensus 491 ~~v~~~l~~~gI~v 504 (588)
++|.++.+++.|.+
T Consensus 383 eQv~~l~ke~~iYm 396 (427)
T KOG1411|consen 383 EQVDWLTKEYHIYL 396 (427)
T ss_pred HHHHHHHhhheeee
Confidence 99999999998876
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.36 Score=49.52 Aligned_cols=216 Identities=16% Similarity=0.150 Sum_probs=119.3
Q ss_pred CHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCcCCC------CCCCCCC
Q 037063 264 HSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATALGSK------DMDTLGL 332 (588)
Q Consensus 264 ~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~~~~------d~~~l~l 332 (588)
++++++++|.+- ++++.....+++.-.++.-|--+- ...+ +++++||+.++||.+|..+- ..+.++|
T Consensus 254 Cl~~Ve~li~~~--~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l 331 (484)
T KOG1405|consen 254 CLAEVEDLIVKY--RKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNL 331 (484)
T ss_pred HHHHHHHHHHHH--hhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCC
Confidence 345677777632 222233445555555555554432 4457 88999999999999987741 1234454
Q ss_pred CCCCCcEEEeccCc-cCCCCCCceEEEEEeCcchhcccCC-CCCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 333 SLFKPDFLICSFYK-IFGENPSGFGCLFVKKSSASVLSGS-TSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 333 ~~~~~D~vv~S~~K-~~G~~P~G~G~L~v~~~~~~~l~~~-~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
+ .++|.+.+| | +.. | | .+-..++.. -+++ .+. + +.|-|.-.
T Consensus 332 ~-~PpD~vTFS--KK~q~----g-G-ffh~~~frp-n~pYrifN--------------T-----------WmGdP~k~-- 374 (484)
T KOG1405|consen 332 D-SPPDVVTFS--KKFQT----G-G-FFHDEEFRP-NEPYRIFN--------------T-----------WMGDPSKN-- 374 (484)
T ss_pred C-CCccceehh--hhhhc----C-c-cccCcccCC-CchHHHhh--------------h-----------hcCChHHH--
Confidence 3 458877654 5 332 1 3 232333211 0111 111 1 12222111
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCH
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDP 490 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~ 490 (588)
..+...++.+++ +.+.+.....-+.|..+|.+|.-.. |+. +. ....||.++++..++.. -.
T Consensus 375 ---lll~~vv~~I~~---~~Ll~n~~~vG~~l~~gL~~Lq~~~-----p~~-~~---~~RGrGTF~a~d~ps~~----~R 435 (484)
T KOG1405|consen 375 ---LLLEEVVQEIKR---EDLLNNVAHVGKALLKGLLELQAKY-----PGK-IN---NLRGRGTFIAWDCPSGS----IR 435 (484)
T ss_pred ---HHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHhC-----chh-hh---cccccceEEEEeCCChH----HH
Confidence 223345555544 5666777777788888887763211 110 10 01136788888877621 13
Q ss_pred HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 491 ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 491 ~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
+.+...+..+||.++ | | |...||+-+...-.....+-+++.+.+.|.
T Consensus 436 dk~i~~~~~nGv~~G-G--C---------------------------g~~siRfRPsLvf~~~Ha~i~l~~~~k~l~ 482 (484)
T KOG1405|consen 436 DKLILIARLNGVNLG-G--C---------------------------GDKSIRFRPSLVFRKHHADIFLDIFDKILA 482 (484)
T ss_pred HHHHHHHHHcCceec-c--c---------------------------ccceeeeccceeehhhhHHHHHHHHHHHhc
Confidence 556777788898874 2 2 111677766666677888899999888765
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.098 Score=48.22 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhC--CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCC
Q 037063 179 ELESKIRKRIMDFMN--ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDH 232 (588)
Q Consensus 179 ~~~~~~r~~ia~~lg--a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~ 232 (588)
++.+.+.+.+.+.+| ++.+...|++|+|+++|+.+++.++ ..+||.|++...+
T Consensus 96 ~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l-~dpGD~VlVp~P~ 150 (153)
T PLN02994 96 NFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCI-ADPGDAFLVPTPY 150 (153)
T ss_pred HHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHH-cCCCCEEEEeCCC
Confidence 444555555555545 3322335999999999999999999 8999998766554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 588 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 5e-06
Identities = 78/576 (13%), Positives = 159/576 (27%), Gaps = 179/576 (31%)
Query: 120 HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPF---FDICY------RSV----N 166
H F + ++ L E F FD C +S+
Sbjct: 6 HMDFETGEHQYQYKDI------------LS--VFEDAFVDNFD-CKDVQDMPKSILSKEE 50
Query: 167 LNSWLQYGSEESE-------LESKIRKRIMDFMN-ISEDDYTLVFTA-----NQSSAFKL 213
++ + S L SK + + F+ + +Y + + Q S
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 214 LAESY--PFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIH----SGK 267
+ Y++ ++ Y+ L + + R + N+ I SGK
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPA------KNVLIDGVLGSGK 163
Query: 268 --LMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWMSVA----------------- 308
+ + K + K +F W+++
Sbjct: 164 TWVALDVC--LSYKVQCKMDFKIF--------------WLNLKNCNSPETVLEMLQKLLY 207
Query: 309 -AEKGWHVLLDATA---LGSKDMDTLGLSLFK----PDFLI-------CSFYKIFGENPS 353
+ W D ++ L + L K + L+ + F
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---- 263
Query: 354 GFGC--LFV--KKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQ--SKFPESSI 407
C L K LS +T++ ++ + + DE K+ +
Sbjct: 264 -LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-------DEVKSLLLKYLDCRP 315
Query: 408 SGVSSKLVECKGLDHADALGLI--LISNRARYLINWLANALMNLHHPHSETGI----P-- 459
+ ++ + L +I I + NW L E+ + P
Sbjct: 316 QDLPREV--LTT--NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-IESSLNVLEPAE 370
Query: 460 LVRIYGPKVMFDRG---PSLAFNVFDW-NGTRIDPALV------QKLADRHNISLSCGFL 509
+++ +F P++ ++ W + + D +V L ++ + +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLI-WFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-I 428
Query: 510 QNIFFS------GEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTY------- 556
+I+ EY R +++ + S + + D Y
Sbjct: 429 PSIYLELKVKLENEYALHR-SIVDHYNIPKTFDSD--------DLIPPYLDQYFYSHIGH 479
Query: 557 ---------RLWAFVSRFLDADFVE-KERWRYMALN 582
R+ F FLD F+E K R A N
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 5e-04
Identities = 79/602 (13%), Positives = 161/602 (26%), Gaps = 197/602 (32%)
Query: 36 ELEAPKSPRTAAAARHEFKVTTTSSLFPNAHFTNHESLPSLQESFANFTKVFPQYLQTDQ 95
E P + + ++ + +F + + + L+++ L
Sbjct: 101 EQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQPYLKLRQA-----------LL--- 145
Query: 96 ADRIRAQDYFHL---------SLNNYVCFDYIGHGLFSYSQMHSCSSNVH--SSAASTSS 144
+R + + VC Y + + + S
Sbjct: 146 --ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF--------KIFWLNLKNCNSP 195
Query: 145 SSPLPSVQ-----LEPPFFDICYRSVNLNSWLQYGSEESELESKIRKR-------IMDFM 192
+ L +Q ++P + S N+ L+ S ++EL ++ + ++
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIK--LRIHSIQAELRRLLKSKPYENCLLVLL-- 251
Query: 193 NISEDDY---------TLVFTANQSSAFKLLAESY-PFYSNPRLLTVYDHENE---AAAL 239
N+ L+ T + L A + + +T+ E + L
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 240 MIESSKKR--------------GARVSSAEFAWPNLR-IHSGKLMKKI---VGKRKKKKK 281
+ W N + ++ KL I + + +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 282 KKR--GLFVFPLQSKVTGARYSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDF 339
+K L VFP + + S +W D+
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIW--------------------FDVIK---------- 401
Query: 340 LICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQ 399
+ K S V S +I I +EL+ E+
Sbjct: 402 ----------SDVMVVVNKLHKYS--LVEKQPKESTISIPSI------YLELKVKLENEY 443
Query: 400 SKFPESSISGVSSKLVEC----KGLDHADALGLILISNRARYLINWLANALMNLHHPHSE 455
+ + +V+ K D D L + Y + + + L N+ HP
Sbjct: 444 A---------LHRSIVDHYNIPKTFDSDD-LIPPYLDQ---YFYSHIGHHLKNIEHPERM 490
Query: 456 TGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGF------L 509
T ++ D F + L QK+ RH+ + L
Sbjct: 491 TLFR--MVF-----LD---------FRF--------LEQKI--RHDSTAWNASGSILNTL 524
Query: 510 QNIFF--------SGEYEQERVRVLET---RSGTNETRS-GVSVVTAALGCLTN--FEDT 555
Q + F +YE+ V + + N S ++ AL FE+
Sbjct: 525 QQLKFYKPYICDNDPKYER-LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Query: 556 YR 557
++
Sbjct: 584 HK 585
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 588 | |||
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 100.0 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 100.0 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 100.0 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 100.0 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.98 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.97 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.97 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.97 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.97 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.97 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.97 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.96 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.96 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.96 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.96 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.96 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.95 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.95 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.95 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.95 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.95 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.95 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.95 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.95 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.95 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.95 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.95 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.94 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.94 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.94 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.94 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.94 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.94 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.94 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.94 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.94 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.94 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.94 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.94 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.94 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.94 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.94 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.94 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.93 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.93 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.93 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.93 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.93 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.93 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.93 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.93 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.93 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.93 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.93 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.93 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.93 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.93 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.93 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.93 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.93 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.93 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.93 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.93 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.92 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.92 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.92 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.92 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.92 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.92 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.92 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.92 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.92 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.92 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.92 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.92 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.92 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.92 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.92 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.92 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.92 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.92 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.92 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.92 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.92 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.92 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.92 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.92 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.91 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.91 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.91 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.91 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.91 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.91 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.91 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.91 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.91 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.91 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.91 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.91 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.91 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.91 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.91 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.91 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.91 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.91 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.9 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.9 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.9 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.9 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.9 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.9 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.9 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.9 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.9 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.9 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.9 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.9 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.9 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.9 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.9 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.9 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.9 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.89 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.89 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.89 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.89 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.89 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.89 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.89 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.89 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.89 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.88 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.88 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.88 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.88 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.88 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.88 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.88 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.88 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.87 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.87 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.87 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.87 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.87 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.87 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.87 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.87 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.86 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.86 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.85 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.85 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.85 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.85 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.85 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.85 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.85 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.84 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.84 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.84 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.84 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.84 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.84 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.84 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.84 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.84 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.84 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.84 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.83 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.83 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.83 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.83 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.82 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.82 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.8 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.8 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.8 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.79 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.79 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.66 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.79 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.78 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.78 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.78 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.78 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.78 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.77 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.77 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.76 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.76 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.76 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.75 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.74 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.74 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.74 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.73 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.73 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.72 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.72 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.72 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.72 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.71 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.71 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.71 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.7 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.68 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.67 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.65 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.59 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.55 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.49 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.19 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.42 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.38 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.29 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.69 |
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=350.82 Aligned_cols=352 Identities=14% Similarity=0.100 Sum_probs=255.3
Q ss_pred CeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHH
Q 037063 111 NYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMD 190 (588)
Q Consensus 111 ~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~ 190 (588)
..+|||++|.++.|+.|++++..++. ..++||.|. +.+++ .+.+..++++++|+.|++
T Consensus 26 ~~~yl~~agpt~~p~~V~~a~~~~~~-~~~~n~~s~-----------~~~~h----------~~~~~~~~~~~ar~~la~ 83 (386)
T 3qm2_A 26 AQVFNFSSGPAMLPAEVLKLAQQELC-DWHGLGTSV-----------MEISH----------RGKEFIQVAEEAEQDFRD 83 (386)
T ss_dssp -CCEECCSSSCCCCHHHHHHHTCC---------------------------------------------CCHHHHHHHHH
T ss_pred ccCccccCCCCCCCHHHHHHHHHHHH-hccccCccc-----------cccCC----------CCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999976664 345666321 10111 112236788999999999
Q ss_pred HhCCCCCCceEEE-ecCHHHHHHHHHHhCCCCCCCeE-EEcCCCchhHHHHHHHHHHhcCCEEEEEecc-CCCCc-cCHH
Q 037063 191 FMNISEDDYTLVF-TANQSSAFKLLAESYPFYSNPRL-LTVYDHENEAAALMIESSKKRGARVSSAEFA-WPNLR-IHSG 266 (588)
Q Consensus 191 ~lga~~~e~~vvf-t~g~T~al~lv~~s~~~~~gd~l-l~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~-~~~~~-i~~e 266 (588)
++|++ ++++|+| |+|+|+++++++.++ +++||++ ++..++++ .+| ...+++.| +|..++++ .+.+. ++++
T Consensus 84 ll~~~-~~~evif~t~~~T~a~n~ai~~l-~~~gd~v~~~~~~~~~--~~~-~~~a~~~G-~v~~v~~~~~~~G~~~~~~ 157 (386)
T 3qm2_A 84 LLNIP-SNYKVLFCHGGGRGQFAGVPLNL-LGDKTTADYVDAGYWA--ASA-IKEAKKYC-APQIIDAKITVDGKRAVKP 157 (386)
T ss_dssp HHTCC-TTEEEEEEESCTTHHHHHHHHHH-CTTCCEEEEEESSHHH--HHH-HHHHTTTS-EEEEEECEEEETTEEEECC
T ss_pred HhCCC-CCceEEEEcCCchHHHHHHHHhc-cCCCCeEEEEeCCHHH--HHH-HHHHHHhC-CeEEEecCcccCCCCCCch
Confidence 99994 4467999 699999999999999 8999995 45666664 466 46678889 99999986 12444 6777
Q ss_pred HHHHHHhhhccccCCCcceEEEEeCCCCCCCcc-CCHHHHHHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccC
Q 037063 267 KLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGAR-YSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFY 345 (588)
Q Consensus 267 ~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~-~pl~~I~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~ 345 (588)
+++.+|+ ++|++|+++|.+|.||++ .|+++|. +|++++||++|+++ ..++|++.+ |++++|+|
T Consensus 158 ~~~~~l~--------~~t~lV~~~h~et~tG~~i~pi~~i~----~g~~~~vDa~qs~g--~~pidv~~~--~~~~~s~h 221 (386)
T 3qm2_A 158 MREWQLS--------DNAAYLHYCPNETIDGIAIDETPDFG----PEVVVTADFSSTIL--SAPLDVSRY--GVIYAGAQ 221 (386)
T ss_dssp GGGCCCC--------TTCSCEEECSEETTTTEECCCCCCCC----TTCCEEEECTTTTT--SSCCCGGGC--SEEEEETT
T ss_pred HHHhhcC--------CCCcEEEEECCcCCcCEecCchhhhc----CCCEEEEEcccccC--CCCCCcccc--CEEEEecc
Confidence 7776666 789999999999999996 8988875 79999999999998 566776664 56889999
Q ss_pred ccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHH
Q 037063 346 KIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADA 425 (588)
Q Consensus 346 K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~ 425 (588)
|++| |.|+|+||+|+++++++.+.... +.+ ...... .....||+|+.++ +++.+||+++.+
T Consensus 222 K~lG--P~G~g~l~v~~~~~~~~~~~~p~---~~~-------~~~~~~----~~~~~gTp~v~~i---~~l~~Al~~~~~ 282 (386)
T 3qm2_A 222 KNIG--PAGLTLVIVREDLLGKAHESCPS---ILD-------YTVLND----NDSMFNTPPTFAW---YLSGLVFKWLKA 282 (386)
T ss_dssp TTTC--CTTEEEEEEEGGGCSCCCTTSCG---GGC-------HHHHHH----C-------CCSHH---HHHHHHHHHHHH
T ss_pred cccC--CCccEEEEECHHHHhhhcccCCc---HHH-------HHHHhh----cCCCCCCCcHHHH---HHHHHHHHHHHH
Confidence 9998 99999999999998877654321 100 000001 1114689999987 899999999999
Q ss_pred h-CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc-cEEEEEeecCCCCCcCHHHHHHHHHhCCcE
Q 037063 426 L-GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG-PSLAFNVFDWNGTRIDPALVQKLADRHNIS 503 (588)
Q Consensus 426 ~-G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg-~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~ 503 (588)
. |++++.+|.+.|+++++++|+++ ..+....+ +..|+ .+++|++++. .++ ..+...|+++||.
T Consensus 283 ~gG~~~i~~~~~~l~~~l~~~l~~~---------~~~~~~~~--~~~rs~~iv~f~~~~~---~~~-~~~~~~L~~~gI~ 347 (386)
T 3qm2_A 283 QGGVAAMHKINQQKAELLYGVIDNS---------DFYRNDVA--QANRSRMNVPFQLADN---TLD-KVFLEESFAAGLH 347 (386)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHTC---------SSEECCBC--GGGBCSSEEEEEESSG---GGH-HHHHHHHHHTTEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHC---------CCcccCCC--HHHcCceEEEEECCCc---ccc-HHHHHHHHHCCCE
Confidence 9 79999999999999999999985 22232222 22454 5999999742 144 4555568889999
Q ss_pred eccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 504 LSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 504 v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
++.|..| .| .||+|++.+||.|||++|+++|+++.++
T Consensus 348 ~~~g~~~--------------------------~~--~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 348 ALKGHRV--------------------------VG--GMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp CCBCCTT--------------------------TC--SEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCC--------------------------cC--eEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 9988655 23 6999999999999999999999998764
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=339.87 Aligned_cols=354 Identities=13% Similarity=0.131 Sum_probs=266.5
Q ss_pred eeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHh
Q 037063 113 VCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFM 192 (588)
Q Consensus 113 vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~l 192 (588)
--||.+++++.|+.|++++.+++. ..++|+.|. +.+++ .+.+..++++++|+.+++++
T Consensus 14 ~~~n~at~~~~p~~Vl~a~~~~~~-~~~~n~~s~-----------~~~~h----------r~~~~~~~~~~ar~~la~ll 71 (377)
T 3e77_A 14 GTENLYFQSMLPHSVLLEIQKELL-DYKGVGISV-----------LEMSH----------RSSDFAKIINNTENLVRELL 71 (377)
T ss_dssp -CCCEECSCCCCHHHHHHHHHTSS-SGGGSSSCT-----------TTCCT----------TSHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCHHHHHHHHHHHH-hcccCCccc-----------cccCC----------CCHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999987764 355666321 11011 11223789999999999999
Q ss_pred CCCCCCceEEE-ecCHHHHHHHHHHhCCCCC--CCeE-EEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHH
Q 037063 193 NISEDDYTLVF-TANQSSAFKLLAESYPFYS--NPRL-LTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKL 268 (588)
Q Consensus 193 ga~~~e~~vvf-t~g~T~al~lv~~s~~~~~--gd~l-l~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l 268 (588)
|++ ++++|+| |+|+|+++++++.++ +.+ ||++ ++..++++ ..| .+.+++.|+.++.+++++ ++.++++++
T Consensus 72 ~~~-~~~evif~t~~~T~a~n~a~~~l-~~~~~Gd~v~~~~~g~~~--~~~-~~~a~~~G~~~~~~~~~~-~~~~~~~~~ 145 (377)
T 3e77_A 72 AVP-DNYKVIFLQGGGCGQFSAVPLNL-IGLKAGRCADYVVTGAWS--AKA-AEEAKKFGTINIVHPKLG-SYTKIPDPS 145 (377)
T ss_dssp TCC-TTEEEEEESSHHHHHHHHHHHHH-GGGSTTCEEEECCCSHHH--HHH-HHHHTTTSEEEECSCCCS-SSCSCCCGG
T ss_pred CCC-CCCeEEEEcCchHHHHHHHHHhc-cCCCCCCeEEEEECCHHH--HHH-HHHHHHhCCceEEeccCC-CcCCCCChH
Confidence 995 3467999 589999999999998 554 8985 45666764 456 577888999888888874 344566666
Q ss_pred HHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHHHHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccC
Q 037063 269 MKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIF 348 (588)
Q Consensus 269 ~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~ 348 (588)
+..++ ++|++|+++|.+|.||+++|+ | ++++|++++||++|+++ ..++|++.+ |++++|.||++
T Consensus 146 ~~~i~--------~~t~lV~~~h~et~tG~~~pi--i--~~~~~~~~~vD~~q~~g--~~~id~~~~--~~~~~s~~K~~ 209 (377)
T 3e77_A 146 TWNLN--------PDASYVYYCANETVHGVEFDF--I--PDVKGAVLVCDMSSNFL--SKPVDVSKF--GVIFAGAQKNV 209 (377)
T ss_dssp GCCCC--------TTCSCEEEESEETTTTEECSS--C--CCCTTCCEEEECTTTTT--SSCCCGGGC--SEEEEEGGGTT
T ss_pred HhccC--------CCccEEEEeCccCchheEchh--h--hccCCCEEEEEcccccC--CCCCchhhc--CEEEEeccccc
Confidence 55554 789999999999999999999 4 67899999999999998 566776664 46899999999
Q ss_pred CCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHh-C
Q 037063 349 GENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL-G 427 (588)
Q Consensus 349 G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~-G 427 (588)
| |.|+|+||+|+++++.+++.... +.+ ...... ...+.||+++.++ +++.+||+++.+. |
T Consensus 210 g--p~G~g~l~~~~~~l~~~~~~~p~---~~~-------~~~~~~----~~~~~~Tp~v~~i---~~l~~al~~l~~~GG 270 (377)
T 3e77_A 210 G--SAGVTVVIVRDDLLGFALRECPS---VLE-------YKVQAG----NSSLYNTPPCFSI---YVMGLVLEWIKNNGG 270 (377)
T ss_dssp S--CTTCEEEEEETTSCSCCCTTSCG---GGC-------HHHHHT----TTTCSSCCCHHHH---HHHHHHHHHHHHTTH
T ss_pred C--CCccEEEEEcHHHHhhccCCCCc---hhh-------HHHHhh----cCCCCCCchHHHH---HHHHHHHHHHHHccC
Confidence 8 99999999999998877654321 110 000000 1115789998886 8999999999999 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc-EEEEEeecCCC-CCcCHHHHHHHHHhCCcEec
Q 037063 428 LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP-SLAFNVFDWNG-TRIDPALVQKLADRHNISLS 505 (588)
Q Consensus 428 ~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~-iv~f~~~~~~g-~~i~~~~v~~~l~~~gI~v~ 505 (588)
++++.+|.+.|+++++++|+++ +++.+. +..+..|++ +++|++++.++ ..++ ..+...+.++||.++
T Consensus 271 ~~~i~~~~~~l~~~l~~~L~~~---------~g~~~~-~~~~~~rs~~ivsf~~~~~~~~~~~~-~~~l~~l~~~Gi~~~ 339 (377)
T 3e77_A 271 AAAMEKLSSIKSQTIYEIIDNS---------QGFYVC-PVEPQNRSKMNIPFRIGNAKGDDALE-KRFLDKALELNMLSL 339 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS---------TTSEEC-CSCGGGBCSSEEEEEESSTTCCHHHH-HHHHHHHHHTTEESC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc---------CCceec-CCCHHHcCCcEEEEEcCCCCCchhHH-HHHHHHHHHCCcEEe
Confidence 9999999999999999999985 566653 323334665 69999987332 1111 234555667899988
Q ss_pred cccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 506 CGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 506 ~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.|..+ .| .+|+|++.++|.|||++|+++|++++++
T Consensus 340 ~g~~~--------------------------~g--~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 340 KGHRS--------------------------VG--GIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp BCCTT--------------------------TC--SEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCc--------------------------CC--EEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 87422 23 6999999999999999999999998765
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=320.56 Aligned_cols=390 Identities=19% Similarity=0.252 Sum_probs=294.8
Q ss_pred hHHHHHhhhccCCCC----CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccc
Q 037063 95 QADRIRAQDYFHLSL----NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSW 170 (588)
Q Consensus 95 ~~~~iR~~~f~~l~~----~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~ 170 (588)
+++.+|+ +||.++. ++.+|||+++.++.|+.+++++.+.+.. ..+||++. .+ .
T Consensus 4 ~~~~~r~-~f~~~~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~--------------------~~-~ 60 (406)
T 1kmj_A 4 SVDKVRA-DFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRH-GYAAVHRG--------------------IH-T 60 (406)
T ss_dssp CHHHHHH-TCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHHHHHH-TCCCCSSC--------------------SS-H
T ss_pred CHHHHHH-hCcccccccCCCceEEecCCccCCCCHHHHHHHHHHHHh-hcCCCCCC--------------------cc-h
Confidence 4678886 6998841 1479999999999999999998766542 34455310 00 0
Q ss_pred cccCCchhHHHHHHHHHHHHHhCC-CCCCceEEEecCHHHHHHHHHHhCC---CCCCCeEE-EcCCCchhHHHHHHHHHH
Q 037063 171 LQYGSEESELESKIRKRIMDFMNI-SEDDYTLVFTANQSSAFKLLAESYP---FYSNPRLL-TVYDHENEAAALMIESSK 245 (588)
Q Consensus 171 ~~~g~~~~~~~~~~r~~ia~~lga-~~~e~~vvft~g~T~al~lv~~s~~---~~~gd~ll-~~~e~~s~~~~~~~~~a~ 245 (588)
++....+..+++|+.|++++++ +++ .|+||+|+|+|+.+++.++. +++||+|+ ....|++....+ ...++
T Consensus 61 --~~~~~~~~~~~l~~~la~~~~~~~~~--~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~-~~~~~ 135 (406)
T 1kmj_A 61 --LSAQATEKMENVRKRASLFINARSAE--ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPW-QMLCA 135 (406)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTCSCGG--GEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHH-HHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHcCCCCCC--eEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHH-HHHHH
Confidence 0111256678999999999999 444 49999999999999999985 78999965 566777644333 45667
Q ss_pred hcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC
Q 037063 246 KRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS 324 (588)
Q Consensus 246 ~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~ 324 (588)
..|++++.++.+ +++.+|+++|+++|+ +++++|++++++|+||.++|+++| ++|+++|+++|+|+++..+
T Consensus 136 ~~g~~~~~~~~~-~~~~~d~~~l~~~l~--------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g 206 (406)
T 1kmj_A 136 RVGAELRVIPLN-PDGTLQLETLPTLFD--------EKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVM 206 (406)
T ss_dssp HHTCEEEEECBC-TTSCBCGGGHHHHCC--------TTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred hCCCEEEEEecC-CCCCcCHHHHHHHhc--------cCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcC
Confidence 789999999997 567899999999997 679999999999999999999999 9999999999999998876
Q ss_pred CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 325 KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 325 ~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
. .++++...++|++++|+||.+| |.|+|++++++++++.+.+...++ +......... ...+...+ .+| +.||
T Consensus 207 ~--~~~~~~~~~~d~~~~s~~K~~g--~~G~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~-~~~-~~~~ 278 (406)
T 1kmj_A 207 H--HPVDVQALDCDFYVFSGHKLYG--PTGIGILYVKEALLQEMPPWEGGG-SMIATVSLSE-GTTWTKAP-WRF-EAGT 278 (406)
T ss_dssp T--SCCCHHHHTCSEEEEEGGGTTS--CTTCEEEEECHHHHHHCCCSSCST-TSEEEEETTT-EEEECCTT-GGG-CCSS
T ss_pred C--CCCcccccCCCEEEEEchhccC--CCCcEEEEEeHHHHhhcCCcccCC-Cceeeccccc-ccccCCCc-hhc-cCCC
Confidence 2 2333334459999999999888 778999999999988888766553 3222111000 00011111 145 6788
Q ss_pred CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCC
Q 037063 405 SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWN 484 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~ 484 (588)
+++.++ +++..+++++.+.+++++.++.+.+++++.+.|.++ ++++++.+. .+++++.|.+.+
T Consensus 279 ~~~~~~---~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~~~---~~~~~~~~~~~~-- 341 (406)
T 1kmj_A 279 PNTGGI---IGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESV---------PDLTLYGPQ---NRLGVIAFNLGK-- 341 (406)
T ss_dssp CCHHHH---HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS---------TTEEEESCT---TCCSEEEEEETT--
T ss_pred CCHHHH---HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC---------CCeEEecCC---CcCCEEEEEECC--
Confidence 887775 666688898887789999999999999999999884 578888753 257898888753
Q ss_pred CCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCC-ccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 485 GTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSG-VSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 485 g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g-~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
++...+.+.|.++||.++.|..|... +... .| ...||+|++.++|.||++++++.|+
T Consensus 342 ---~~~~~~~~~l~~~gi~v~~g~~~~~~------------~~~~-------~g~~~~iRis~~~~~t~~~i~~~~~~l~ 399 (406)
T 1kmj_A 342 ---HHAYDVGSFLDNYGIAVRTGHHCAMP------------LMAY-------YNVPAMCRASLAMYNTHEEVDRLVTGLQ 399 (406)
T ss_dssp ---CCHHHHHHHHHHTTEECEEECTTCHH------------HHHH-------TTCSCEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHhhCCcEEEeccccchH------------HHHh-------cCCCCeEEEEeecCCCHHHHHHHHHHHH
Confidence 45777888889999999999887521 1111 22 2399999999999999999999999
Q ss_pred Hhhhh
Q 037063 564 RFLDA 568 (588)
Q Consensus 564 ~~l~~ 568 (588)
++++.
T Consensus 400 ~~~~~ 404 (406)
T 1kmj_A 400 RIHRL 404 (406)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98753
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=319.70 Aligned_cols=375 Identities=17% Similarity=0.167 Sum_probs=281.9
Q ss_pred hHHHHHhhhccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccC
Q 037063 95 QADRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYG 174 (588)
Q Consensus 95 ~~~~iR~~~f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g 174 (588)
+++.+|+ +||.++ ++.+|||+++.++.|+.+++++.+.+.. ..+||++ ...++
T Consensus 12 ~~~~~r~-~fp~~~-~~~~~ld~~~~~~~~~~v~~a~~~~~~~-~~~~~~~------------------------~~~~~ 64 (406)
T 3cai_A 12 DVARVRG-LHPSLG-DGWVHFDAPAGMLIPDSVATTVSTAFRR-SGASTVG------------------------AHPSA 64 (406)
T ss_dssp CHHHHHH-TCTTTT-SSCEECBGGGCCCCCHHHHHHHHHHHHH-CCSSSCS------------------------SSHHH
T ss_pred cHHHHHH-hhhhcC-CCeEEEeCCCcCCCCHHHHHHHHHHHHh-cCCCCCC------------------------ccHHH
Confidence 6778886 699994 3599999999999999999998766532 2334411 00011
Q ss_pred CchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhC--CCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEE
Q 037063 175 SEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY--PFYSNPRLL-TVYDHENEAAALMIESSKKRGARV 251 (588)
Q Consensus 175 ~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~--~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v 251 (588)
....+..+++|+.+++++|+++++ |+||+|+|+++.+++.++ .+++||+|+ ...+|++....+ ..+++..|+++
T Consensus 65 ~~~~~~~~~l~~~la~~~g~~~~~--v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~-~~~~~~~g~~v 141 (406)
T 3cai_A 65 RRSAAVLDAAREAVADLVNADPGG--VVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPW-LRAAHRYGAKV 141 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGG--EEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHH-HHHHHHHBCEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCe--EEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHH-HHHHHhcCCeE
Confidence 112567889999999999997554 999999999999999887 478999965 566777633333 45556679999
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCC
Q 037063 252 SSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTL 330 (588)
Q Consensus 252 ~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l 330 (588)
+.++++..++.+|+++|+++|+ +++++|++++++|+||.+.|+++| ++|+++|+++|+|+++..+. .++
T Consensus 142 ~~v~~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~--~~~ 211 (406)
T 3cai_A 142 KWAEVDIETGELPTWQWESLIS--------KSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPY--RLL 211 (406)
T ss_dssp EEECCCTTTCCCCGGGHHHHCC--------TTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTT--CCC
T ss_pred EEEecCcccCCcCHHHHHHHhC--------CCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCC--CCC
Confidence 9999875567899999999997 689999999999999999999999 99999999999999998762 223
Q ss_pred CCCCCCCcEEEeccCccCCCCCCceE-EEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 331 GLSLFKPDFLICSFYKIFGENPSGFG-CLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~~G~~P~G~G-~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
++..+++|++++|+||++| |. +| ++++++++++.+++..... +. .. + .+| +.||++..+
T Consensus 212 ~~~~~~~d~~~~s~~K~~g--~~-~G~~~~~~~~~~~~l~~~~~~~-~~-----------~~---~-~~~-~~~t~~~~~ 271 (406)
T 3cai_A 212 DIRETDADVVTVNAHAWGG--PP-IGAMVFRDPSVMNSFGSVSTNP-YA-----------TG---P-ARL-EIGVHQFGL 271 (406)
T ss_dssp CHHHHCCSEEEEEGGGGTS--CS-CEEEEESCHHHHHTSCCCCSCT-TC-----------CG---G-GGG-CCSCCCHHH
T ss_pred CchhcCCCEEEeehhhhcC--CC-cCeEEEEehHHHhhcCCcccCC-CC-----------Cc---c-ccc-cCCCccHHH
Confidence 3333458999999999988 64 88 9999998887776553110 10 00 0 144 678888777
Q ss_pred hhhHHHHHHHHHHHHHhC--------------HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE
Q 037063 410 VSSKLVECKGLDHADALG--------------LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS 475 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G--------------~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i 475 (588)
+ +++..+++++..+| ++++.++.+.+++++.+.|.++ ++++++.+.. .++++
T Consensus 272 ~---~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~~~~--~~~~~ 337 (406)
T 3cai_A 272 L---AGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSL---------PLVMLIGRPE--AQIPV 337 (406)
T ss_dssp H---HHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------TTEEECCCCS--SBCSE
T ss_pred H---HHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcC---------CCeEEcCCcc--ccCCE
Confidence 5 67778899888765 7889999999999999999984 5788877642 35678
Q ss_pred EEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHH
Q 037063 476 LAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDT 555 (588)
Q Consensus 476 v~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv 555 (588)
+.|.+.+ ++...+.+.|.++||.++.|... . .. ..+.. ..+...||+|++.+++.|||
T Consensus 338 ~~~~~~~-----~~~~~~~~~L~~~gi~v~~g~~~-~-----~~----~~~g~-------~~~~~~iRis~~~~~t~e~i 395 (406)
T 3cai_A 338 VSFAVHK-----VPADRVVQRLADNGILAIANTGS-R-----VL----DVLGV-------NDVGGAVTVGLAHYSTMAEV 395 (406)
T ss_dssp EEEEETT-----BCHHHHHHHHHHTTEECEECCSC-H-----HH----HHHTT-------TTTTCCEEEECCTTCCHHHH
T ss_pred EEEEECC-----cCHHHHHHHHHHCCcEEecCChH-H-----HH----HHcCC-------CCCCCeEEEEeecCCCHHHH
Confidence 8888764 45777888888899999987511 0 00 00000 01123899999999999999
Q ss_pred HHHHHHHHHh
Q 037063 556 YRLWAFVSRF 565 (588)
Q Consensus 556 ~~li~~l~~~ 565 (588)
+++++.|+++
T Consensus 396 ~~~~~~l~~~ 405 (406)
T 3cai_A 396 DQLVRALASL 405 (406)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHh
Confidence 9999998763
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-37 Score=322.19 Aligned_cols=351 Identities=13% Similarity=0.109 Sum_probs=263.2
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
...+|+=++|.+++|+.|++++.+++. ..++||.|. +.+ ++ .+.+..++++++|+.++
T Consensus 3 ~~~~~~f~pgpt~~~~~V~~a~~~~~~-~~~~~~~s~-----------~~~--------~h--r~~~~~~~~~~~r~~la 60 (361)
T 3m5u_A 3 AMRKINFSAGPSTLPLEILEQAQKELC-DYQGRGYSI-----------MEI--------SH--RTKVFEEVHFGAQEKAK 60 (361)
T ss_dssp -CCCEECCSSSCCCCHHHHHHHHHTSS-SGGGSSSCG-----------GGS--------CS--SSHHHHHHHHHHHHHHH
T ss_pred ccceEeecCCCCCCcHHHHHHHHHHHH-hcccCCcee-----------ecc--------CC--CCHHHHHHHHHHHHHHH
Confidence 346788889999999999999987764 345666321 100 01 12234789999999999
Q ss_pred HHhCCCCCCceEEE-ecCHHHHHHHHHHhCCCCCCCeE-EEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCc-cCHH
Q 037063 190 DFMNISEDDYTLVF-TANQSSAFKLLAESYPFYSNPRL-LTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLR-IHSG 266 (588)
Q Consensus 190 ~~lga~~~e~~vvf-t~g~T~al~lv~~s~~~~~gd~l-l~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~-i~~e 266 (588)
+++|+++ +++|+| |+|+|+++++++.++ + +||++ +....+++ ..| ...+++.|++|..+++++.... ++++
T Consensus 61 ~ll~~~~-~~~v~f~t~~~T~a~n~~~~~~-~-~~~~~~~i~~~~~~--~~~-~~~a~~~G~~v~~~~~~~~g~~~~~~~ 134 (361)
T 3m5u_A 61 KLYELND-DYEVLFLQGGASLQFAMIPMNL-A-LNGVCEYANTGVWT--KKA-IKEAQILGVNVKTVASSEESNFDHIPR 134 (361)
T ss_dssp HHHTCCT-TEEEEEESSHHHHHHHHHHHHH-C-CSSCEEEEECSHHH--HHH-HHHHHHTTCCEEEEEECTTTTSCSCCC
T ss_pred HHhCCCC-CceEEEEcCcHHHHHHHHHHhc-C-CCCeEEEEeCCHHH--HHH-HHHHHHcCCceEEEecccCcCCCcCCh
Confidence 9999963 356999 999999999999998 5 78863 23333443 456 4567888999999999844322 4555
Q ss_pred HHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHHHHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCc
Q 037063 267 KLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYK 346 (588)
Q Consensus 267 ~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K 346 (588)
+ + |+ ++|++|+++|.+|.||+++|. | ++ +|++++||++|+++ ..++|++. +|++++|+||
T Consensus 135 ~--~-l~--------~~t~lv~~~~~e~~tG~~~~~--i--~~-~~~~~~vD~~q~~g--~~~id~~~--~d~~~~s~~K 194 (361)
T 3m5u_A 135 V--E-FS--------DNADYAYICSNNTIYGTQYQN--Y--PK-TKTPLIVDASSDFF--SRKVDFSN--IALFYGGVQK 194 (361)
T ss_dssp C--C-CC--------TTSSEEEEESEETTTTEECSS--C--CC-CSSCEEEECGGGTT--SSCCCCTT--EEEEEEETTT
T ss_pred h--h-cC--------CCCCEEEEeCCCCCcceeCCc--c--cc-cCCEEEEEcccccC--CCCCCccc--CCEEEEechh
Confidence 5 3 76 789999999999999999882 4 33 49999999999998 56677764 7999999999
Q ss_pred cCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHh
Q 037063 347 IFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL 426 (588)
Q Consensus 347 ~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~ 426 (588)
++| |.|+|+||+++++++.+++.+.. .+.+ ....... .. ..||+++.++ +++.+||+++.+.
T Consensus 195 ~~g--p~G~g~l~~~~~~~~~~~~~~~p--~~~~-------~~~~~~~---~~-~~~Tp~v~~i---~~l~~al~~l~~~ 256 (361)
T 3m5u_A 195 NAG--ISGLSCIFIRKDMLERSKNKQIP--SMLN-------YLTHAEN---QS-LFNTPPTFAI---YMFNLEMDWLLNQ 256 (361)
T ss_dssp TSS--CTTCEEEEEEHHHHHHHHTCCCC--GGGC-------HHHHHHT---TT-CSSCCCHHHH---HHHHHHHHHHHTT
T ss_pred ccC--CCccEEEEEcHHHHhhhcCCCCC--ceee-------hHHHhhc---CC-CCCCccHHHH---HHHHHHHHHHHHc
Confidence 998 99999999999998877663222 1110 0000001 11 4689998886 8999999999999
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe-EEEeCCCCCCCc-ccEEEEEeecCCCCCcCHHHHHHHHHhCCcE
Q 037063 427 -GLILISNRARYLINWLANALMNLHHPHSETGIPL-VRIYGPKVMFDR-GPSLAFNVFDWNGTRIDPALVQKLADRHNIS 503 (588)
Q Consensus 427 -G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~-v~i~~p~~~~~r-g~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~ 503 (588)
|++++.+|.+.|+++++++|+++ ++ ++++.+. ..+ ..+++|++++.. .++ ..+...|+++||.
T Consensus 257 gG~~~i~~~~~~l~~~l~~~L~~~---------~g~~~~~~~~--~~rs~~ivsf~~~~~~--~~~-~~~~~~L~~~gI~ 322 (361)
T 3m5u_A 257 GGLDKVHEKNSQKATMLYECIDLS---------NGFYKGHADK--KDRSLMNVSFNIAKNK--DLE-PLFVKEAEEAGMI 322 (361)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTS---------TTSEEESSCG--GGBCSSEEEEEESSCT--THH-HHHHHHHHHTTEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHC---------CCeeeccCCH--HHcCCeEEEEECCCch--hhh-HHHHHHHHHCCCE
Confidence 89999999999999999999985 43 3665542 234 469999997511 144 3566788899999
Q ss_pred eccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 504 LSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 504 v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
++.|..| .| .||+|++.+||.|||++++++|+++.++
T Consensus 323 ~~~g~~~--------------------------~g--~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 323 GLKGHRI--------------------------LG--GIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp CCBCCTT--------------------------TC--SEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EecCCCc--------------------------cC--eEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 9888543 23 6999999999999999999999998765
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=311.81 Aligned_cols=391 Identities=19% Similarity=0.224 Sum_probs=292.5
Q ss_pred hhHHHHHhhhccCCCCCC------eeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCccccccccccc
Q 037063 94 DQADRIRAQDYFHLSLNN------YVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNL 167 (588)
Q Consensus 94 ~~~~~iR~~~f~~l~~~~------~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~ 167 (588)
..+..+|+ +||.+ ++ .+|||++..++.|+.+++++.+.+.. ..+||++.
T Consensus 8 ~~~~~~r~-~f~~~--~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~--------------------- 62 (420)
T 1t3i_A 8 SLAATVRQ-DFPIL--NQEINGHPLVYLDNAATSQKPRAVLEKLMHYYEN-DNANVHRG--------------------- 62 (420)
T ss_dssp CHHHHHGG-GCGGG--SCEETTEECEECBTTTCCCCCHHHHHHHHHHHHH-TCCCC--C---------------------
T ss_pred HHHHHHHH-hCCcc--ccccCCCceEEecCCccCCCCHHHHHHHHHHHHh-ccCCCCcc---------------------
Confidence 45567886 69987 44 79999999999999999988666532 33444210
Q ss_pred ccccccCCchhHHHHHHHHHHHHHhCC-CCCCceEEEecCHHHHHHHHHHhCC---CCCCCeEE-EcCCCchhHHHHHHH
Q 037063 168 NSWLQYGSEESELESKIRKRIMDFMNI-SEDDYTLVFTANQSSAFKLLAESYP---FYSNPRLL-TVYDHENEAAALMIE 242 (588)
Q Consensus 168 ~s~~~~g~~~~~~~~~~r~~ia~~lga-~~~e~~vvft~g~T~al~lv~~s~~---~~~gd~ll-~~~e~~s~~~~~~~~ 242 (588)
...|+....+..+++|+.|+++++. +++ .|+||+|+|+|+.+++.++. +++||+|+ ....|++....+ ..
T Consensus 63 --~~~y~~~~~~~~~~l~~~la~~~~~~~~~--~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~ 137 (420)
T 1t3i_A 63 --AHQLSVRATDAYEAVRNKVAKFINARSPR--EIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPW-QM 137 (420)
T ss_dssp --CSHHHHHHHHHHHHHHHHHHHHTTCSCGG--GEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHH-HH
T ss_pred --cchHHHHHHHHHHHHHHHHHHHcCCCCCC--eEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHH-HH
Confidence 0012211145678999999999999 544 49999999999999999984 68899965 556677643323 45
Q ss_pred HHHhcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCC
Q 037063 243 SSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATA 321 (588)
Q Consensus 243 ~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~ 321 (588)
.++..|++++.++++ .++.+|+++|+++|+ +++++|++++++|+||..+|+++| ++|+++|+++|+|+++
T Consensus 138 ~~~~~g~~~~~v~~~-~~~~~d~~~l~~~l~--------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~ 208 (420)
T 1t3i_A 138 VAAKTGAVLKFVQLD-EQESFDLEHFKTLLS--------EKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQ 208 (420)
T ss_dssp HHHHHCCEEEEECBC-TTSSBCHHHHHHHCC--------TTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHHhcCcEEEEeccC-CCCCcCHHHHHHhhC--------CCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhh
Confidence 666789999999997 677899999999997 679999999999999999999999 9999999999999998
Q ss_pred cCCCCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccccccccc
Q 037063 322 LGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSK 401 (588)
Q Consensus 322 ~~~~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e 401 (588)
..+. ..+++...++|++++|+||++| |.|+|++++++++++.+.+...++ +........ ...+...+ .+| +
T Consensus 209 ~~~~--~~~~~~~~~~di~~~s~sK~~~--~~g~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~-~~~-~ 279 (420)
T 1t3i_A 209 SAPH--YPLDVQLIDCDWLVASGHKMCA--PTGIGFLYGKEEILEAMPPFFGGG-EMIAEVFFD--HFTTGELP-HKF-E 279 (420)
T ss_dssp TTTT--SCCCHHHHTCSEEEEEGGGTTS--CTTCEEEEECHHHHHHSCCCSCST-TSEEEECSS--CEEECCTT-GGG-C
T ss_pred ccCC--ccCchhhcCCCEEEEehhhhcC--CCceEEEEEchHHHhhcCceecCC-Ccccccccc--ccCCCCch-hhc-c
Confidence 8762 2233333458999999999888 778999999999888887765543 322211100 00111111 145 5
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCC-CcccEEEEEe
Q 037063 402 FPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMF-DRGPSLAFNV 480 (588)
Q Consensus 402 ~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~-~rg~iv~f~~ 480 (588)
.|++++.+. +++..+++++.+.|++++.++.+.+++++.+.|.++ ++++++.+.... .+++++.|.+
T Consensus 280 ~~~~~~~~~---~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------~g~~~~~~~~~~~~~~~~~~~~~ 347 (420)
T 1t3i_A 280 AGTPAIAEA---IALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQI---------PQLRLYGPNPKHGDRAALASFNV 347 (420)
T ss_dssp CSSCCHHHH---HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC---------TTEEEESCCGGGSCBCSEEEEEE
T ss_pred CCCccHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhC---------CCeEEeCCCccccccCCEEEEEE
Confidence 678777764 566668898888789999999999999999999984 578888764211 2478998887
Q ss_pred ecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCC-ccEEEEecCCCCCHHHHHHHH
Q 037063 481 FDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSG-VSVVTAALGCLTNFEDTYRLW 559 (588)
Q Consensus 481 ~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g-~~~vRvSlg~~~t~eDv~~li 559 (588)
.+ .+...+.+.|.++||.++.|..|... .... .| ...||+|++.+++.+|+++++
T Consensus 348 ~~-----~~~~~~~~~l~~~gi~v~~~~~~~~~------------~~~~-------~g~~~~iRis~~~~~~~~~i~~~~ 403 (420)
T 1t3i_A 348 AG-----LHASDVATMVDQDGIAIRSGHHCTQP------------LHRL-------FDASGSARASLYFYNTKEEIDLFL 403 (420)
T ss_dssp TT-----BCHHHHHHHHHTTTEECBCSCTTCHH------------HHHH-------TTCCCCEEEECCTTCCHHHHHHHH
T ss_pred CC-----CCHHHHHHHHHHCCeEEeeccccchH------------HHHh-------cCCCCeEEEecCCCCCHHHHHHHH
Confidence 54 45777888899999999999877421 1111 22 238999999999999999999
Q ss_pred HHHHHhhhh
Q 037063 560 AFVSRFLDA 568 (588)
Q Consensus 560 ~~l~~~l~~ 568 (588)
+.|+++++.
T Consensus 404 ~~l~~~~~~ 412 (420)
T 1t3i_A 404 QSLQATIRF 412 (420)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-36 Score=312.64 Aligned_cols=362 Identities=17% Similarity=0.167 Sum_probs=271.6
Q ss_pred eeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHH
Q 037063 112 YVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDF 191 (588)
Q Consensus 112 ~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~ 191 (588)
.||||+++.++.|+.+++++.+.+.. .++||++. + .++....+.++++|+.++++
T Consensus 1 ~iyld~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~---------------------~---~~~~~~~~~~~~~~~~la~~ 55 (382)
T 4hvk_A 1 MAYFDYTSAKPVDERILEAMLPYMTE-SFGNPSSV---------------------H---SYGFKAREAVQEAREKVAKL 55 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHT-SCCCTTCS---------------------S---HHHHHHHHHHHHHHHHHHHH
T ss_pred CEeecCCCcCCCCHHHHHHHHHHHHh-hcCCCccc---------------------c---hHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999998776643 45566321 0 01112367888999999999
Q ss_pred hCCCCCCceEEEecCHHHHHHHHHHhCCC---CCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHH
Q 037063 192 MNISEDDYTLVFTANQSSAFKLLAESYPF---YSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGK 267 (588)
Q Consensus 192 lga~~~e~~vvft~g~T~al~lv~~s~~~---~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~ 267 (588)
+|++++ .|++|+|+|+|+.+++.++.+ ++||+|+ ...+|++ .... ...++..|++++.++++ +++.+|+++
T Consensus 56 ~~~~~~--~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~-~~~~-~~~~~~~g~~~~~v~~~-~~~~~d~~~ 130 (382)
T 4hvk_A 56 VNGGGG--TVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMS-VINP-AKFLQKQGFEVEYIPVG-KYGEVDVSF 130 (382)
T ss_dssp TTCTTE--EEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHH-HHHH-HHHHHHTTCEEEEECBC-TTSCBCHHH
T ss_pred cCCCcC--eEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHH-HHHH-HHHHHhcCCEEEEeccC-CCCCcCHHH
Confidence 999765 499999999999999998832 8999966 5567775 3222 34456789999999998 778899999
Q ss_pred HHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCc
Q 037063 268 LMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYK 346 (588)
Q Consensus 268 l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K 346 (588)
|+++++ +++++|++++++|+||.+.|+++| ++|+++|+ +|+|+++..+ ...+++...++|++++|+||
T Consensus 131 l~~~i~--------~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~--~~~~~~~~~~~d~~~~s~~K 199 (382)
T 4hvk_A 131 IDQKLR--------DDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVG--QIEVDVEKIGADMLTISSND 199 (382)
T ss_dssp HHHHCC--------TTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBT--TBCCCHHHHTCSEEEEESGG
T ss_pred HHHHhc--------cCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcC--CCCCCchhcCCCEEEEeHHH
Confidence 999998 689999999999999999999999 99999999 9999998876 23333333458999999999
Q ss_pred cCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHh
Q 037063 347 IFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL 426 (588)
Q Consensus 347 ~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~ 426 (588)
++| |.|+|+++++++. .+.+...++ +. . ..+ +.||++...+ +++..+++++.+
T Consensus 200 ~~g--~~g~g~~~~~~~~--~~~~~~~~~-~~--------------~---~~~-~~~~~~~~~~---~~~~~al~~~~~- 252 (382)
T 4hvk_A 200 IYG--PKGVGALWIRKEA--KLQPVILGG-GQ--------------E---NGL-RSGSENVPSI---VGFGKAAEITAM- 252 (382)
T ss_dssp GTS--CTTCEEEEEETTC--CCCCSSCSS-CT--------------G---GGT-SCSCCCHHHH---HHHHHHHHHHHH-
T ss_pred hcC--CCceEEEEEcCcc--CcCcccccC-CC--------------c---Ccc-ccCCcCHHHH---HHHHHHHHHHHh-
Confidence 988 7799999999876 455555442 11 0 033 5777777765 666778876654
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEecc
Q 037063 427 GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSC 506 (588)
Q Consensus 427 G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~ 506 (588)
+++++.++.+++++++.+.|.++ ++++++.+.. ...+.++.|.+.+ .+...+.+.|.++||.++.
T Consensus 253 ~~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~ 317 (382)
T 4hvk_A 253 EWREEAERLRRLRDRIIDNVLKI---------EESYLNGHPE-KRLPNNVNVRFSY-----IEGESIVLSLDMAGIQAST 317 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS---------TTEEECSCSS-SBCTTEEEEEETT-----CCHHHHHHHHHHTTCBCBC
T ss_pred hHHHHHHHHHHHHHHHHHHHhcC---------CCeEEeCCcc-ccCCCEEEEEECC-----CCHHHHHHHHHHCCEEEee
Confidence 57999999999999999999874 6788887642 1223588888865 4577888888889999999
Q ss_pred ccccCcccccchHHHHHHHHhhhcCCCCCcCC------ccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 507 GFLQNIFFSGEYEQERVRVLETRSGTNETRSG------VSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 507 G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g------~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
|..|.+....... .+.. .| .+.||++++.++|.||++++++.|++++++.
T Consensus 318 g~~~~~~~~~~~~-----~~~~--------~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~ 373 (382)
T 4hvk_A 318 GSACSSKTLQPSH-----VLMA--------CGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERL 373 (382)
T ss_dssp C--------CCCH-----HHHH--------TTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCCcchH-----HHHH--------cCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9888643211110 0010 11 1389999999999999999999999988653
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-36 Score=324.50 Aligned_cols=382 Identities=14% Similarity=0.113 Sum_probs=275.6
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
++.+|||+++.|+.|+.+.+++.+.+.. +++.. .+.+... + ....++.+++|++++
T Consensus 66 ~~~iyld~~~~g~~p~~v~~~i~~~l~~--~~~~~--------------------~~~~~~~-~-~~~~~~~~~l~~~la 121 (465)
T 3e9k_A 66 ENAIYFLGNSLGLQPKMVKTYLEEELDK--WAKIA--------------------AYGHEVG-K-RPWITGDESIVGLMK 121 (465)
T ss_dssp CBCEECBTTTSCCEETTHHHHHHHHHHH--HHHHG--------------------GGGGTSS-S-SCGGGTTHHHHGGGH
T ss_pred CCeEEecCCccCCChHHHHHHHHHHHHH--HHhhC--------------------CcccccC-C-ccHHHhHHHHHHHHH
Confidence 3689999999999999887766544421 11110 0000000 0 001344568999999
Q ss_pred HHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCC---CeEE-EcCCCchhHHHHHHHHHHhcCCEE-----EEEeccCCC
Q 037063 190 DFMNISEDDYTLVFTANQSSAFKLLAESYPFYSN---PRLL-TVYDHENEAAALMIESSKKRGARV-----SSAEFAWPN 260 (588)
Q Consensus 190 ~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~g---d~ll-~~~e~~s~~~~~~~~~a~~~G~~v-----~~v~~~~~~ 260 (588)
+++|+++++ |+||+|+|+++++++.++ .++| ++|+ ....|++..+.+ ...++..|+++ ..++.+ .+
T Consensus 122 ~~~g~~~~~--v~~t~g~t~al~~~~~~~-~~~~~~~~~Vl~~~~~~~s~~~~~-~~~~~~~G~~~~~~~v~~~~~~-~~ 196 (465)
T 3e9k_A 122 DIVGANEKE--IALMNALTVNLHLLMLSF-FKPTPKRYKILLEAKAFPSDHYAI-ESQLQLHGLNIEESMRMIKPRE-GE 196 (465)
T ss_dssp HHHTCCGGG--EEECSCHHHHHHHHHHHH-CCCCSSSCEEEEETTCCHHHHHHH-HHHHHHTTCCHHHHEEEECCCT-TC
T ss_pred HHcCCCcCC--EEEECCHHHHHHHHHHHh-ccccCCCCEEEEcCCcCCchHHHH-HHHHHHcCCcceeeeEEEecCC-CC
Confidence 999998665 999999999999999998 5554 4465 566777655544 45677889875 344554 56
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcE
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDF 339 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~ 339 (588)
+.+|.++|+++|++. .+++++|++++++|+||.++|+++| ++|+++|++|++|++|..+ ..++++..+++||
T Consensus 197 ~~~d~~~l~~~i~~~-----~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g--~~~~~~~~~~~D~ 269 (465)
T 3e9k_A 197 ETLRIEDILEVIEKE-----GDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVG--NVELYLHDWGVDF 269 (465)
T ss_dssp SSCCHHHHHHHHHHH-----GGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTT--TSCCCHHHHTCCE
T ss_pred CccCHHHHHHHHHhc-----CCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcC--CcCCchhhcCCCE
Confidence 789999999999620 1479999999999999999999999 9999999999999999987 4455555566999
Q ss_pred EEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc-cccccccCCCCCccchhhHHHHHH
Q 037063 340 LICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL-DESSQSKFPESSISGVSSKLVECK 418 (588)
Q Consensus 340 vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~-~~~~f~e~GT~~~~~~~~~~al~~ 418 (588)
+++|+||+++.+|.|+|+++++++.++.+.+...|+.+........... .+... ...+| +.||+++.++ +++.+
T Consensus 270 ~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~~gt~~~~~~---~a~~a 344 (465)
T 3e9k_A 270 ACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDN-KLQLIPGVCGF-RISNPPILLV---CSLHA 344 (465)
T ss_dssp EEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCS-CCCBCSSGGGG-CCSCCCHHHH---HHHHH
T ss_pred EEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCC-CcCcCCChHHh-ccCCccHHHH---HHHHH
Confidence 9999999872128889999999999888877665531110000000000 01111 11367 8899998886 78889
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCC-CCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHH
Q 037063 419 GLDHADALGLILISNRARYLINWLANALMNLHHPH-SETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLA 497 (588)
Q Consensus 419 aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~-~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l 497 (588)
+++.+...|++++.++...+++++.+.|.++.... ..++.++++++.|.+...++++++|.+.. +...+.+.|
T Consensus 345 al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~------~~~~l~~~L 418 (465)
T 3e9k_A 345 SLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV------PNKDVFQEL 418 (465)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC------TTCCHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC------CHHHHHHHH
Confidence 99999999999999999999999999998841100 00012578999886555578999998862 234567777
Q ss_pred HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec-CCCCCHHHHHHHHHHHHHhhhh
Q 037063 498 DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL-GCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 498 ~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl-g~~~t~eDv~~li~~l~~~l~~ 568 (588)
.++||.++.+ +..+||+|+ +++++++||+++++.|++++++
T Consensus 419 ~~~Gi~v~~~------------------------------~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 419 EKRGVVCDKR------------------------------NPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp HTTTEECEEE------------------------------TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred HHCCEEEecC------------------------------CCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 8889988632 112899999 8999999999999999998875
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=302.92 Aligned_cols=377 Identities=14% Similarity=0.119 Sum_probs=277.0
Q ss_pred hHHHHHhhhccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccC
Q 037063 95 QADRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYG 174 (588)
Q Consensus 95 ~~~~iR~~~f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g 174 (588)
.++++|+ +|+.+ ++.+|||+++.++.|+.+++++.+.+......++ .+...|.
T Consensus 3 ~~~~~r~-~f~~~--~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~------------------------~~~~~y~ 55 (390)
T 1elu_A 3 MITPSLH-QFPGL--ANKTYFNFGGQGILPTVALEAITAMYGYLQENGP------------------------FSIAANQ 55 (390)
T ss_dssp --------CCGGG--TTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCS------------------------SSHHHHH
T ss_pred chHHHHH-hcCCC--CCeEEecCCccCCCCHHHHHHHHHHHHHHhccCC------------------------cchhhHH
Confidence 4668885 69977 7899999999999999999988666532111111 0000011
Q ss_pred CchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEE
Q 037063 175 SEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSS 253 (588)
Q Consensus 175 ~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~ 253 (588)
.......++|+.|++++|+++++ |+||+|+|+|+.+++.++.+++||+|++ ...|++ ....+...++..|++++.
T Consensus 56 -~~~~~~~~l~~~la~~~g~~~~~--v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~-~~~~~~~~~~~~g~~~~~ 131 (390)
T 1elu_A 56 -HIQQLIAQLRQALAETFNVDPNT--ITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPG-IIAIVQAIAARFGITYRF 131 (390)
T ss_dssp -HHHHHHHHHHHHHHHHTTSCGGG--EEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHH-HHHHHHHHHHHHCCEEEE
T ss_pred -HHHHHHHHHHHHHHHHcCCCHHH--EEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccH-HHHHHHHHHHHhCcEEEE
Confidence 01356789999999999997654 9999999999999999987789999664 556665 332234556777999999
Q ss_pred EeccC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHH----HcCcEEEEeCCCcCCCCC
Q 037063 254 AEFAW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAA----EKGWHVLLDATALGSKDM 327 (588)
Q Consensus 254 v~~~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~----~~g~~vvvDaa~~~~~d~ 327 (588)
++.+. .++.+|+++|+++|+ +++++|++++++|+||..+|+++| ++|+ ++|+++|+|+++..+ .
T Consensus 132 v~~~~~~~~~~d~~~l~~~i~--------~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g--~ 201 (390)
T 1elu_A 132 FPVAATLNQGDAAAVLANHLG--------PKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAG--S 201 (390)
T ss_dssp ECCGGGSSSSCHHHHHHTTCC--------TTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBT--T
T ss_pred EcCCCCCCccchHHHHHHhcC--------CCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccC--C
Confidence 99863 356789999998887 679999999999999999999999 9999 999999999998876 2
Q ss_pred CCCCCCCCCCcEEEeccCc-cCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 328 DTLGLSLFKPDFLICSFYK-IFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 328 ~~l~l~~~~~D~vv~S~~K-~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
.++++....+|+++.|+|| ++| |.|+|++++++++++.+.+...|+ +......... ...+.... .+| +.||++
T Consensus 202 ~~~~~~~~~~d~~~~s~~K~~~~--~~g~G~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~-~~~~~~~~-~~~-~~~~~~ 275 (390)
T 1elu_A 202 LPLDFSRLEVDYYAFTGHKWFAG--PAGVGGLYIHGDCLGEINPTYVGW-RSITYGAKGE-PTGWAEGG-KRF-EVATSA 275 (390)
T ss_dssp BCCCTTTSCCSEEEEESSSTTCC--CTTCEEEEECTTTGGGCCCCSCCT-TTEEECTTSC-EEEECSGG-GGG-CCSCCC
T ss_pred cCCChhhcCCCEEEccccccccC--CCceEEEEECHHhHhhcCCccccC-CcccccccCc-ccccccch-Hhh-CCCCCC
Confidence 3444555669999999999 666 789999999999988887766553 3222110000 00000000 144 567877
Q ss_pred ccchhhHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCC
Q 037063 407 ISGVSSKLVECKGLDHADALG-LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNG 485 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G-~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g 485 (588)
.... +++..+++.+...| ++++.++.+.+++++.+.|.++ ++++++.|. ..+++++.|.+.. +
T Consensus 276 ~~~~---~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~---------~g~~~~~~~--~~~~~~~~~~~~~--~ 339 (390)
T 1elu_A 276 YPQY---AGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQL---------PHVHCLATS--APQAGLVSFTVDS--P 339 (390)
T ss_dssp HHHH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS---------TTEEESCSS--CCSSSEEEEEECS--S
T ss_pred HHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc---------CCcEEecCc--cccccEEEEEcCC--C
Confidence 6654 56678898887777 8999999999999999999984 578888753 2467888887742 1
Q ss_pred CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 486 TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 486 ~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
++...+.+.|.++||.++.|. +.+.||+|++++++.+|++++++.|+++
T Consensus 340 --~~~~~~~~~l~~~gi~v~~~~-----------------------------~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 340 --LGHRAIVQKLEEQRIYLRTIA-----------------------------DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp --SCHHHHHHHHHHTTEECEEET-----------------------------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred --CCHHHHHHHHHHCCEEEEecC-----------------------------CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 457777777788999998762 1128999999999999999999998764
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=305.13 Aligned_cols=366 Identities=17% Similarity=0.154 Sum_probs=269.7
Q ss_pred eeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHH
Q 037063 112 YVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDF 191 (588)
Q Consensus 112 ~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~ 191 (588)
++|||+++.++.|+.+++++.+.+.. .++||++. + .++....+.++++|+.++++
T Consensus 1 ~~yld~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~---------------------~---~~~~~~~~~~~~l~~~la~~ 55 (382)
T 4eb5_A 1 MAYFDYTSAKPVDERILEAMLPYMTE-SFGNPSSV---------------------H---SYGFKAREAVQEAREKVAKL 55 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHT-SCCCTTCS---------------------S---HHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeccCCCCCCCHHHHHHHHHHHHh-ccCCCCCC---------------------c---HHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999998776643 45555320 0 00111256788999999999
Q ss_pred hCCCCCCceEEEecCHHHHHHHHHHhCC---CCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHH
Q 037063 192 MNISEDDYTLVFTANQSSAFKLLAESYP---FYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGK 267 (588)
Q Consensus 192 lga~~~e~~vvft~g~T~al~lv~~s~~---~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~ 267 (588)
+|++++ .|++|+|+|+|+.+++.++. .++||+|++ ...|++ .... ...++..|++++.++++ +++.+|+++
T Consensus 56 ~g~~~~--~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~-~~~~-~~~~~~~g~~~~~v~~~-~~~~~d~~~ 130 (382)
T 4eb5_A 56 VNGGGG--TVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMS-VINP-AKFLQKQGFEVEYIPVG-KYGEVDVSF 130 (382)
T ss_dssp HTCTTE--EEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHH-HHHH-HHHHTTTTCEEEEECBC-TTSCBCHHH
T ss_pred hCCCCC--eEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchH-HHHH-HHHHHhCCcEEEEeccC-CCCccCHHH
Confidence 999754 49999999999999999982 178999664 556665 3332 33445679999999998 678899999
Q ss_pred HHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCc
Q 037063 268 LMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYK 346 (588)
Q Consensus 268 l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K 346 (588)
|+++|+ +++++|++++++|+||..+|+++| ++|+++|++ |+|+++..+. .++++..+++|++++|+||
T Consensus 131 l~~~i~--------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~--~~~~~~~~~~di~~~s~sK 199 (382)
T 4eb5_A 131 IDQKLR--------DDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQ--IEVDVEKIGADMLTISSND 199 (382)
T ss_dssp HHHHCC--------TTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTT--BCCCHHHHTCSEEEEETGG
T ss_pred HHHHhc--------CCCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCC--cccCccccCCCEEEeehHH
Confidence 999997 678999999999999999999999 999999999 9999988762 2333333358999999999
Q ss_pred cCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHh
Q 037063 347 IFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL 426 (588)
Q Consensus 347 ~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~ 426 (588)
++| |.|+|+++++++. .+.+...++ +. . ..+ ..||++...+ +++..+++.+.+
T Consensus 200 ~~g--~~g~G~~~~~~~~--~l~~~~~~~-~~--------------~---~~~-~~~~~~~~~~---~~~~~al~~~~~- 252 (382)
T 4eb5_A 200 IYG--PKGVGALWIRKEA--KLQPVILGG-GQ--------------E---NGL-RSGSENVPSI---VGFGKAAEITAM- 252 (382)
T ss_dssp GTC--CSSCEEEEEETTC--CCCCSSCSS-CT--------------G---GGT-SCSCCCHHHH---HHHHHHHHHHHH-
T ss_pred hcC--CCceEEEEEcccc--ccCceecCC-Cc--------------c---ccc-cCCCccHHHH---HHHHHHHHHHHH-
Confidence 988 7799999999874 344443331 11 0 022 4567776654 566788888766
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEecc
Q 037063 427 GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSC 506 (588)
Q Consensus 427 G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~ 506 (588)
+++++.++.+.+++++.+.|.++ ++++++.+.. ...++++.|.+.+ ++...+.+.|.++||.++.
T Consensus 253 ~~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~ 317 (382)
T 4eb5_A 253 EWREEAERLRRLRDRIIDNVLKI---------EESYLNGHPE-KRLPNNVNVRFSY-----IEGESIVLSLDMAGIQAST 317 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS---------TTEEECSCSS-SBCTTEEEEEETT-----SCHHHHHHHHHHHTCBCBC
T ss_pred hHHHHHHHHHHHHHHHHHHHhhC---------CCeEEeCCcc-cCCCCEEEEEeCC-----cCHHHHHHHHHHCCEEEec
Confidence 58899999999999999999874 5688876532 1236688888764 4577787878889999999
Q ss_pred ccccCcccccchHHHHHHHHhhhcCCCCC-cCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 507 GFLQNIFFSGEYEQERVRVLETRSGTNET-RSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 507 G~~c~~~~~~~~~~~~~~~l~~~~~~~~~-~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
|..|.+....... .+... +.. ..+.+.||+|++.+++.||++++++.|+++++.
T Consensus 318 g~~~~~~~~~~~~-----~~~~~---g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (382)
T 4eb5_A 318 GSACSSKTLQPSH-----VLMAC---GLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp CCGGGTSSCCCCH-----HHHHT---TCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCcccH-----HHHHc---CCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9877643211110 00000 000 001238999999999999999999999998865
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=302.36 Aligned_cols=374 Identities=16% Similarity=0.119 Sum_probs=276.1
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhccc-CcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHS-SAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRI 188 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~-~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~i 188 (588)
++.+|||+++.++.|+.+++++.+.+.. ..+++|++.. + .++....+.++++++.+
T Consensus 21 ~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~--------------------~---~~~~~~~~~~~~l~~~l 77 (423)
T 3lvm_A 21 KLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRS--------------------H---RFGWQAEEAVDIARNQI 77 (423)
T ss_dssp CSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTT--------------------S---HHHHHHHHHHHHHHHHH
T ss_pred CCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccc--------------------c---chhHHHHHHHHHHHHHH
Confidence 6899999999999999999998766531 3455553200 0 01112257788999999
Q ss_pred HHHhCCCCCCceEEEecCHHHHHHHHHHhCC---CCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccC
Q 037063 189 MDFMNISEDDYTLVFTANQSSAFKLLAESYP---FYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIH 264 (588)
Q Consensus 189 a~~lga~~~e~~vvft~g~T~al~lv~~s~~---~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~ 264 (588)
++++|+++++ |+||+|+|+|+.+++.++. .++||+|++ ...|++ .... ...++..|++++.++.+ +++.+|
T Consensus 78 a~~~~~~~~~--v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~-~~~~-~~~~~~~g~~~~~v~~~-~~~~~d 152 (423)
T 3lvm_A 78 ADLVGADPRE--IVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKA-VLDT-CRQLEREGFEVTYLAPQ-RNGIID 152 (423)
T ss_dssp HHHHTCCGGG--EEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHH-HHHH-HHHHHHTTCEEEEECCC-TTSCCC
T ss_pred HHHcCCCCCe--EEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchH-HHHH-HHHHHHcCCEEEEeccC-CCCccC
Confidence 9999997654 9999999999999998872 137999664 556665 3322 23346779999999998 678899
Q ss_pred HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEec
Q 037063 265 SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICS 343 (588)
Q Consensus 265 ~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S 343 (588)
+++|+++|+ +++++|++++++|+||...|+++| ++|+++|++||+|+++..+ ..++++....+|++++|
T Consensus 153 ~~~l~~~i~--------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~--~~~~~~~~~~~di~~~s 222 (423)
T 3lvm_A 153 LKELEAAMR--------DDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVG--KLPIDLSQLKVDLMSFS 222 (423)
T ss_dssp HHHHHHHCC--------TTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTT--TSCCCTTTSCCSEEEEE
T ss_pred HHHHHHhcC--------CCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcC--CCCcChhhcCCCEEEec
Confidence 999999998 689999999999999999999999 9999999999999998876 23445555569999999
Q ss_pred cCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHH
Q 037063 344 FYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHA 423 (588)
Q Consensus 344 ~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l 423 (588)
+||++| |.|+|+++++++....+.+...++ +.. ..+ ..+|++.... +++..+++.+
T Consensus 223 ~sK~~g--~~g~G~~~~~~~~~~~~~~~~~~~-~~~-----------------~~~-~~~~~~~~~~---~a~~~al~~~ 278 (423)
T 3lvm_A 223 GHKIYG--PKGIGALYVRRKPRVRIEAQMHGG-GHE-----------------RGM-RSGTLPVHQI---VGMGEAYRIA 278 (423)
T ss_dssp STTTTS--CSSCEEEEECBTTBCCCCCSSCSS-CTT-----------------TTT-CCSCCCHHHH---HHHHHHHHHH
T ss_pred hHHhcC--CCCeEEEEEeccccCCCCccccCC-ccc-----------------ccc-cCCCCCHHHH---HHHHHHHHHH
Confidence 999888 778999999998887777766542 110 022 4667776664 6667888877
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcE
Q 037063 424 DALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNIS 503 (588)
Q Consensus 424 ~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~ 503 (588)
... ++++.++.+.+++++.+.|.++ ++++++.+.. ...+.++.|.+.+ .+...+.+.|.+ |.
T Consensus 279 ~~~-~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~l~~~l~~--i~ 340 (423)
T 3lvm_A 279 KEE-MATEMERLRGLRNRLWNGIKDI---------EEVYLNGDLE-HGAPNILNVSFNY-----VEGESLIMALKD--LA 340 (423)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHTTS---------TTEEEESCST-TBCTTEEEEEETT-----SCHHHHHHHTTT--EE
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcC---------CCEEEeCCcc-ccCCCeEEEEeCC-----CCHHHHHHHHhh--he
Confidence 665 7899999999999999999874 6788887643 1234688888754 457777777766 99
Q ss_pred eccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhhh
Q 037063 504 LSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDADF 570 (588)
Q Consensus 504 v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~~ 570 (588)
++.|..|.++............+.. ..+...||++++..++.|||+++++.|++++++..
T Consensus 341 v~~g~~~~~~~~~~~~~~~~~g~~~-------~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~ 400 (423)
T 3lvm_A 341 VSSGSACTSASLEPSYVLRALGLND-------ELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLR 400 (423)
T ss_dssp CBCCCC-----CCCCHHHHHHTCCH-------HHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eccCccccCCCccccHHHHHhCCCc-------cccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999888653221111000000000 00013899999999999999999999999987643
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=303.50 Aligned_cols=384 Identities=14% Similarity=0.092 Sum_probs=267.1
Q ss_pred HHhhhccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchh
Q 037063 99 IRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEES 178 (588)
Q Consensus 99 iR~~~f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~ 178 (588)
.|..+|+++ .+.+|||+++.++.|+.+++++.+.+.. .+++|++. + ..+....
T Consensus 8 ~~~~~~~~~--~~~~~Ld~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~---------------------~---~~~~~~~ 60 (432)
T 3a9z_A 8 ARGSVESPP--NRKVYMDYNATTPLEPEVIQAVTEAMKE-AWGNPSSS---------------------Y---VAGRKAK 60 (432)
T ss_dssp ------------CCEECBTTTCCCCCHHHHHHHHHHHHH-CCSCTTCS---------------------S---HHHHHHH
T ss_pred ccccccCCC--CCcEEeeCCccCCCCHHHHHHHHHHHHH-hcCCCccC---------------------c---HHHHHHH
Confidence 355678887 7899999999999999999998766643 44555210 0 0011125
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCC--------CCCC-------------eE-EEcCCCchhH
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPF--------YSNP-------------RL-LTVYDHENEA 236 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~--------~~gd-------------~l-l~~~e~~s~~ 236 (588)
+.++++|+++++++|+++++ |+||+|+|+|+.+++.++ . ++|| +| ++..+|++..
T Consensus 61 ~~~~~l~~~la~~~g~~~~~--v~~~~g~t~a~~~~~~~~-~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~ 137 (432)
T 3a9z_A 61 DIINTARASLAKMIGGKPQD--IIFTSGGTESNNLVIHST-VRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIR 137 (432)
T ss_dssp HHHHHHHHHHHHHHTCCGGG--EEEESCHHHHHHHHHHHH-HHHHHHHHHHC------------CCCEEEEETTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCe--EEEeCChHHHHHHHHHHH-HhhhhhccccCCccccccccccccCCeEEEecCcchhHH
Confidence 67889999999999997654 999999999999999887 3 4674 43 3566777643
Q ss_pred HHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcC---
Q 037063 237 AALMIESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKG--- 312 (588)
Q Consensus 237 ~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g--- 312 (588)
. .+..+++..|++++.+++++.++.+|+++|+++|+ +++++|++++++|+||.++|+++| ++|+++|
T Consensus 138 ~-~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~--------~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ 208 (432)
T 3a9z_A 138 L-PLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVR--------PTTCLVTIMLANNETGVIMPISEISRRIKALNQIR 208 (432)
T ss_dssp H-HHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCC--------TTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhcc--------CCceEEEEECcccCcccccCHHHHHHHHHhcCccc
Confidence 3 33566677899999999974477899999999887 679999999999999999999999 9999999
Q ss_pred -------cEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcc-hhcccCCCCCCCceEeeecC
Q 037063 313 -------WHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSS-ASVLSGSTSSVSTIMGIEPS 384 (588)
Q Consensus 313 -------~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~-~~~l~~~~~g~~g~v~~~~~ 384 (588)
+++|+|+++..+ ..++++....+|++++|+||++| |. +|+++++++. ...+.+...++ +..
T Consensus 209 ~~~~~~~~~livDea~~~~--~~~~~~~~~~~d~~~~s~~K~~g--~~-~G~~~~~~~~~~~~~~~~~~~~-~~~----- 277 (432)
T 3a9z_A 209 AASGLPRVLVHTDAAQALG--KRRVDVEDLGVDFLTIVGHKFYG--PR-IGALYVRGVGKLTPLYPMLFGG-GQE----- 277 (432)
T ss_dssp HHHTCCCCEEEEECTTTTT--TSCCCHHHHCCSEEEEEGGGTTC--CS-CEEEEETTBTTTBCCCCSCCSS-CGG-----
T ss_pred ccccCCceEEEEEchhhhC--CcccChhhcCCCEEEEehhHhcC--Cc-ceEEEEccccccCCcCceeecC-Ccc-----
Confidence 999999998776 23334333458999999999988 76 9999999876 44565555442 110
Q ss_pred CCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEe
Q 037063 385 FSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIY 464 (588)
Q Consensus 385 ~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~ 464 (588)
..+ +.||.+..++ +++.++++++.+ +++++.++.+.+++++.+.|.++. | ..+.++
T Consensus 278 ------------~~~-~~~~~~~~~~---~a~~aal~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~------g-~~~~~~ 333 (432)
T 3a9z_A 278 ------------RNF-RPGTENTPMI---AGLGKAADLVSE-NCETYEAHMRDIRDYLEERLEAEF------G-KRIHLN 333 (432)
T ss_dssp ------------GGT-SCSCCCHHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH------G-GGEEES
T ss_pred ------------ccc-cCCCcCHHHH---HHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHhcc------C-CcEEEe
Confidence 033 5678877764 677788888766 589999999999999999998741 1 125555
Q ss_pred CCCCCC-CcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCC-cCCccEE
Q 037063 465 GPKVMF-DRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNET-RSGVSVV 542 (588)
Q Consensus 465 ~p~~~~-~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~-~~g~~~v 542 (588)
+|.... ..+.+++|.+.+.. .+...+.+.+ .+|.++.|..|.++...... ..+... |.. ..+.++|
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l--~~i~~~~G~~~~~~~~~~~~----~~l~~~---g~~~~~~~~~i 401 (432)
T 3a9z_A 334 SRFPGVERLPNTCNFSIQGSQ---LRGYMVLAQC--QTLLASVGASCHSDHEDRPS----PVLLSC---GIPVDVARNAV 401 (432)
T ss_dssp SCCTTCCBCTTEEEEEECSTT---CCHHHHHHHC--SSEECBSSCGGGGGGTTSCC----HHHHHT---TCCHHHHTTEE
T ss_pred CCCCcccCCCCEEEEEeCCCC---CcHHHHHHHh--cCeEEeccccccCCCCCCcc----HHHHhc---CCCccccCceE
Confidence 552111 23458888887521 2344444433 48999999888653211000 011110 000 0011389
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 543 TAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 543 RvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
|+|++.++|.||++++++.|++++++
T Consensus 402 Ris~~~~~t~eei~~~~~~l~~~~~~ 427 (432)
T 3a9z_A 402 RLSVGRSTTRAEVDLIVQDLKQAVNQ 427 (432)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998753
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=299.15 Aligned_cols=364 Identities=12% Similarity=0.047 Sum_probs=268.3
Q ss_pred hccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 103 DYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 103 ~f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
+||.+ .+.+|||+++.++.|+.+++++.+.+.. + ++....+.++
T Consensus 2 ~fp~~--~~~~yl~~~~~~~~~~~v~~a~~~~~~~------~----------------------------~~~~~~~~~~ 45 (392)
T 2z9v_A 2 RYPEH--ADPVITLTAGPVNAYPEVLRGLGRTVLY------D----------------------------YDPAFQLLYE 45 (392)
T ss_dssp CCCTT--SCCSEECSSSCCCCCHHHHHHTTSCCCC------T----------------------------TSHHHHHHHH
T ss_pred CcccC--CCcceeecCCCcCCCHHHHHHHhccccc------c----------------------------ccHHHHHHHH
Confidence 58988 7889999999999999999997544311 0 0001246678
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccCCCC
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAWPNL 261 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~ 261 (588)
++|+.+++++|+++++ |++|+|+|+|+.+++.++ +++||+|++ ...|++. .+ ...++..|++++.++++ +++
T Consensus 46 ~l~~~la~~~g~~~~~--v~~t~g~t~a~~~~~~~~-~~~gd~Vl~~~~~~~~~--~~-~~~~~~~g~~~~~v~~~-~~~ 118 (392)
T 2z9v_A 46 KVVDKAQKAMRLSNKP--VILHGEPVLGLEAAAASL-ISPDDVVLNLASGVYGK--GF-GYWAKRYSPHLLEIEVP-YNE 118 (392)
T ss_dssp HHHHHHHHHTTCSSCC--EEESSCTHHHHHHHHHHH-CCTTCCEEEEESSHHHH--HH-HHHHHHHCSCEEEEECC-TTS
T ss_pred HHHHHHHHHhCCCCCE--EEEeCCchHHHHHHHHHh-cCCCCEEEEecCCcccH--HH-HHHHHHcCCceEEeeCC-CCC
Confidence 9999999999997554 999999999999999998 899999664 5566652 33 45567789999999997 567
Q ss_pred ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEE
Q 037063 262 RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFL 340 (588)
Q Consensus 262 ~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~v 340 (588)
.+|+++|++++++ .+++++|++++++|+||..+|+++| ++|+++|+++|+|+++..+ ..++++..+++|++
T Consensus 119 ~~d~~~l~~~l~~------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g--~~~~~~~~~~~d~~ 190 (392)
T 2z9v_A 119 AIDPQAVADMLKA------HPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFG--GMKTHPEDCKADIY 190 (392)
T ss_dssp CCCHHHHHHHHHH------CTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBT--TBSCCGGGGTCSEE
T ss_pred CCCHHHHHHHHhc------CCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccC--CcccccccccceEE
Confidence 8999999999951 1478999999999999999999999 9999999999999998876 22334444458999
Q ss_pred EeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCc-e-EeeecCCCcccccccccccccccCCCCCccchhhHHHHHH
Q 037063 341 ICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVST-I-MGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECK 418 (588)
Q Consensus 341 v~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g-~-v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~ 418 (588)
++|+||+++. |.|+|++++++++++.+++...|. | . ..... .+..-....+ ..||++..++ +++..
T Consensus 191 ~~s~sK~~~~-~~g~G~l~~~~~~~~~l~~~~~g~-~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~---~a~~~ 258 (392)
T 2z9v_A 191 VTGPNKCLGA-PPGLTMMGVSERAWAKMKANPLAP-RASMLSIVD------WENAWSRDKP-FPFTPSVSEI---NGLDV 258 (392)
T ss_dssp EECSSSTTCC-CSCCEEEEECHHHHHHHHTCTTSC-CSSTTCSGG------GTTTTSTTSC-CSSCCCHHHH---HHHHH
T ss_pred EecCcccccC-CCceeEEEECHHHHHHhhhccCCC-CceeccHHH------HHhhhcccCC-CCCCCCHHHH---HHHHH
Confidence 9999995442 789999999998887776432100 0 0 00000 0000000022 4667776664 66778
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHH
Q 037063 419 GLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLAD 498 (588)
Q Consensus 419 aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~ 498 (588)
+++.+.+.|++++.++.+.+++++.+.|.++ +++++.|......+.++.|.+++ + ++...+.+.|.
T Consensus 259 al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~l~~~L~ 324 (392)
T 2z9v_A 259 ALDLYLNEGPEAVWARHALTAKAMRAGVTAM----------GLSVWAASDSIASPTTTAVRTPD--G--VDEKALRQAAR 324 (392)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----------TCCBSSSSGGGBCTTEEEEECCT--T--CCHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHc----------CCeeccCCccccCCceEEEECCC--C--CCHHHHHHHHH
Confidence 8998888889999999999999999999884 24455532111246778888752 1 45677777666
Q ss_pred hC-CcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec-CCCCCHHHHHHHHHHHHHhhhhh
Q 037063 499 RH-NISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL-GCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 499 ~~-gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl-g~~~t~eDv~~li~~l~~~l~~~ 569 (588)
++ ||.++.|..+ .+...||+|+ +++++.+|++++++.|++++++.
T Consensus 325 ~~~gi~v~~g~~~--------------------------~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 325 ARYGVVFSSGRGE--------------------------TLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp HHHCEECEECCGG--------------------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred hcCCEEEecCCCC--------------------------CCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence 65 9999887432 1112899995 55899999999999999988754
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=299.37 Aligned_cols=396 Identities=11% Similarity=0.115 Sum_probs=274.8
Q ss_pred HHHHHHHhCCCCCCchhHHHHHhhhccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcc
Q 037063 79 SFANFTKVFPQYLQTDQADRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFF 158 (588)
Q Consensus 79 ~~~~f~~~~p~y~~~~~~~~iR~~~f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~ 158 (588)
.++..++.. ..++++|+ +||.+ ++.+|||+++.++.|+.+++++.+.+.. .++++.+
T Consensus 5 ~~~~~~~~~------~~~~~~r~-~f~~~--~~~~yld~~~~~~~~~~v~~a~~~~l~~-~~~~~~~------------- 61 (416)
T 1qz9_A 5 NDCLALDAQ------DSLAPLRQ-QFALP--EGVIYLDGNSLGARPVAALARAQAVIAE-EWGNGLI------------- 61 (416)
T ss_dssp HHHHHHHHT------CTTGGGGG-GBCCC--TTCEECCTTTSCCCBTTHHHHHHHHHHT-CCCCCGG-------------
T ss_pred hHHHhcccc------chhHHHHH-hCCCC--CCeEeecCCCcCCCcHHHHHHHHHHHHH-HHhccCc-------------
Confidence 355666644 35668886 69977 7899999999999999999998766632 2333310
Q ss_pred cccccccccccccccCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhC-CC----CCCCe-EEEc-CC
Q 037063 159 DICYRSVNLNSWLQYGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY-PF----YSNPR-LLTV-YD 231 (588)
Q Consensus 159 ~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~-~~----~~gd~-ll~~-~e 231 (588)
++. +.....+.++++|+.+++++|+++++ |+||+|+|+++.+++.++ .+ ++||+ |++. ..
T Consensus 62 ---------~~~--~~~~~~~~~~~l~~~la~~~g~~~~~--v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~ 128 (416)
T 1qz9_A 62 ---------RSW--NSAGWRDLSERLGNRLATLIGARDGE--VVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSN 128 (416)
T ss_dssp ---------GHH--HHTSGGGHHHHHHHHHHTTTTCCTTS--EEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTS
T ss_pred ---------ccc--chhhHHHHHHHHHHHHHHHcCCCccc--EEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCC
Confidence 000 00001356789999999999997655 999999999998888776 23 78987 5554 45
Q ss_pred CchhHHHHHHHHHHhc--CCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHH
Q 037063 232 HENEAAALMIESSKKR--GARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVA 308 (588)
Q Consensus 232 ~~s~~~~~~~~~a~~~--G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a 308 (588)
|++ ....+..+++.. |++++.++. +++|+++|+ +++++|++++++|+||...|+++| ++|
T Consensus 129 ~~~-~~~~~~~~~~~~~~g~~~~~v~~--------~~~l~~~i~--------~~~~~v~~~~~~nptG~~~~l~~i~~l~ 191 (416)
T 1qz9_A 129 FPT-DLYIAEGLADMLQQGYTLRLVDS--------PEELPQAID--------QDTAVVMLTHVNYKTGYMHDMQALTALS 191 (416)
T ss_dssp CHH-HHHHHHHHHHHHCSSCEEEEESS--------GGGHHHHCS--------TTEEEEEEESBCTTTCBBCCHHHHHHHH
T ss_pred CCc-hHHHHHHHHHHhcCCceEEEeCc--------HHHHHHHhC--------CCceEEEEeccccCcccccCHHHHHHHH
Confidence 654 332223444444 999988875 578888887 679999999999999999999999 999
Q ss_pred HHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCCCCCCce-EEEEEeCcchhcccCCCCCCCceEeeecCCCc
Q 037063 309 AEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPSGF-GCLFVKKSSASVLSGSTSSVSTIMGIEPSFSE 387 (588)
Q Consensus 309 ~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~-G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~ 387 (588)
+++|+++|+|+++..+ ...+++..+.+|++++|+||+++. +.|+ |++++++++++.+.+...|+.|.........+
T Consensus 192 ~~~~~~li~D~a~~~g--~~~~~~~~~~~d~~~~s~~K~l~~-g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~ 268 (416)
T 1qz9_A 192 HECGALAIWDLAHSAG--AVPVDLHQAGADYAIGCTYKYLNG-GPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPR 268 (416)
T ss_dssp HHHTCEEEEECTTTTT--TSCCCHHHHTCSEEEECSSSTTCC-CTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSS
T ss_pred HHcCCEEEEEcccccc--CcCCChhhcCCCEEEecCcccCCC-CCCCeEEEEECHHHHhccCCCccccCccccccCCCCc
Confidence 9999999999999876 223333334589999999997643 5566 99999999888777654331111100000000
Q ss_pred ccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC--eEEEeC
Q 037063 388 IIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIP--LVRIYG 465 (588)
Q Consensus 388 ~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~--~v~i~~ 465 (588)
. .+.. ....+ ..||++..++ +++.++++.+.+.+++++.++.+.+++++.+.|.++ .+ +++++.
T Consensus 269 ~-~~~~-~~~~~-~~~~~~~~~~---~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--------~~~~g~~~~~ 334 (416)
T 1qz9_A 269 Y-EPSN-GIARY-LCGTQPITSL---AMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQR--------CAAHELTLVT 334 (416)
T ss_dssp C-CBCS-SGGGG-CCSCCCHHHH---HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH--------HTTSCCEECS
T ss_pred c-CCCc-chHHh-cCCCCCHHHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh--------ccCCCeEEeC
Confidence 0 0000 01134 5678777765 677788888876689999999999999999999874 23 577776
Q ss_pred CCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe
Q 037063 466 PKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA 545 (588)
Q Consensus 466 p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS 545 (588)
+.....+++++.|.+.+ ...+.+.|.++||.++.. +...||+|
T Consensus 335 ~~~~~~~~~~~~~~~~~-------~~~l~~~l~~~gi~~~~~------------------------------~~~~lRis 377 (416)
T 1qz9_A 335 PREHAKRGSHVSFEHPE-------GYAVIQALIDRGVIGDYR------------------------------EPRIMRFG 377 (416)
T ss_dssp CSSGGGBCSEEEEECTT-------HHHHHHHHHTTTEECEEE------------------------------TTTEEEEE
T ss_pred CCCHHHcCCEEEEecCC-------HHHHHHHHHhCCcEeccC------------------------------CCCeEEEe
Confidence 64221246777777653 566777778889986421 11289999
Q ss_pred cC-CCCCHHHHHHHHHHHHHhhhhhhcccccccccccccccc
Q 037063 546 LG-CLTNFEDTYRLWAFVSRFLDADFVEKERWRYMALNQKTI 586 (588)
Q Consensus 546 lg-~~~t~eDv~~li~~l~~~l~~~~~~~~~~~~~~~~~~~~ 586 (588)
++ ++++.+||+++++.|++++++ ..|+.-..||++.
T Consensus 378 ~~~~~~t~~~i~~~~~~l~~~~~~-----~~~~~~~~~~~~~ 414 (416)
T 1qz9_A 378 FTPLYTTFTEVWDAVQILGEILDR-----KTWAQAQFQVRHS 414 (416)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHHHH-----TTTC---------
T ss_pred CcccCCCHHHHHHHHHHHHHHHhc-----cccccccccccCC
Confidence 98 699999999999999988754 5889988898864
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=290.22 Aligned_cols=368 Identities=12% Similarity=0.098 Sum_probs=272.7
Q ss_pred HHHhhhccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCch
Q 037063 98 RIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEE 177 (588)
Q Consensus 98 ~iR~~~f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~ 177 (588)
++|+ +||.+ +..+|||+.+.++.++.+++++.+.+.. + |+...
T Consensus 9 ~~r~-~f~~~--~~~~~l~~~~~~~~~~~v~~a~~~~~~~------~----------------------------~~~~~ 51 (386)
T 2dr1_A 9 AFKE-VYEMV--KPKYKLFTAGPVACFPEVLEIMKVQMFS------H----------------------------RSKEY 51 (386)
T ss_dssp HHHH-HHHHH--SCCSEECCSSSCCCCHHHHHHTTSCCCC------T----------------------------TSHHH
T ss_pred HHHH-HHhhc--CccceeecCCCcCCcHHHHHHHhccccc------c----------------------------cCHHH
Confidence 5775 59888 5689999999999999999987543310 0 11112
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++.+++++.+++++|++ +.+.|++|+|+|+|+.+++.++ +++||+|++ ...|++. .+ ...++..|++++.++.
T Consensus 52 ~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~a~~~~~~~l-~~~gd~vl~~~~~~~~~--~~-~~~~~~~g~~~~~v~~ 126 (386)
T 2dr1_A 52 RKVHMDTVERLREFLEVE-KGEVLLVPSSGTGIMEASIRNG-VSKGGKVLVTIIGAFGK--RY-KEVVESNGRKAVVLEY 126 (386)
T ss_dssp HHHHHHHHHHHHHHHTCS-SSEEEEESSCHHHHHHHHHHHH-SCTTCEEEEEESSHHHH--HH-HHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCC-CCcEEEEeCChHHHHHHHHHHh-hcCCCeEEEEcCCchhH--HH-HHHHHHhCCceEEEec
Confidence 577889999999999997 3345999999999999999998 889999664 4555532 12 4566778999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ +++.+|+++|+++|.+ .+++++|++++++|+||.+.|+++| ++|+++|+++|+|+++..+. ..+++..+
T Consensus 127 ~-~~~~~d~~~l~~~l~~------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~ 197 (386)
T 2dr1_A 127 E-PGKAVKPEDLDDALRK------NPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGG--ADIKFDKW 197 (386)
T ss_dssp C-TTCCCCHHHHHHHHHH------CTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTT--BCCCTTTT
T ss_pred C-CCCCCCHHHHHHHHhc------CCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccC--cccccccc
Confidence 8 5678999999999951 1578999999999999999999999 99999999999999987762 23344455
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHH
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLV 415 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~a 415 (588)
++|++++|+||++|. |.|+|++++++++++.+.+....+ +..+.. ..+.......+ ..+|++.... ++
T Consensus 198 ~~di~~~s~sK~~~~-~~g~G~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~-~~~~~~~~~~---~a 265 (386)
T 2dr1_A 198 GLDVVFSSSQKAFGV-PPGLAIGAFSERFLEIAEKMPERG-WYFDIP------LYVKYLKEKES-TPSTPPMPQV---FG 265 (386)
T ss_dssp TCSEEEEETTSTTCC-CSSCEEEEECHHHHHHHTTCTTCC-STTCHH------HHHHHHHHHSS-CSSCCCHHHH---HH
T ss_pred CCcEEEEeccccccC-CCceEEEEECHHHHHHHhcCCCCc-eEEeHH------HHHHhhccCCC-CCCCCCHHHH---HH
Confidence 689999999998885 668999999998887775432111 110000 00000000012 4556666554 66
Q ss_pred HHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHH
Q 037063 416 ECKGLDHADAL-GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQ 494 (588)
Q Consensus 416 l~~aL~~l~~~-G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~ 494 (588)
+..+|+.+.+. |++++.++.+.+++++.+.|.++ +++++.+.. ...+.++.|.+.+ + ++...+.
T Consensus 266 ~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~~-~~~~~~~~~~~~~--~--~~~~~~~ 330 (386)
T 2dr1_A 266 INVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI----------GLDILAEPG-HESPTITAVLTPP--G--IKGDEVY 330 (386)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT----------TCCBSSCTT-CBCSSEEEEECCT--T--CCHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc----------CCeeCcCcc-ccCCceEEEEcCC--C--CCHHHHH
Confidence 77889888877 78999999999999999999984 244444422 1246788888753 1 4567777
Q ss_pred HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 495 KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 495 ~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
+.|.++||.++.|..+ .+...||+|++.+++.+|++++++.|++++++.
T Consensus 331 ~~l~~~gi~v~~~~~~--------------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 379 (386)
T 2dr1_A 331 EAMRKRGFELAKGYGS--------------------------VKEKTFRIGHMGYMKFEDIQEMLDNLREVINEL 379 (386)
T ss_dssp HHHHHTTEECEECCGG--------------------------GTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEecCccc--------------------------cCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 7777779999887421 111289999999999999999999999988753
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=287.29 Aligned_cols=367 Identities=16% Similarity=0.146 Sum_probs=260.6
Q ss_pred eeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHh
Q 037063 113 VCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFM 192 (588)
Q Consensus 113 vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~l 192 (588)
+|||+++.++.|+.+++++.+.+.. .+++|++. + . ++....+...++|+.+++++
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~---------------------~-~--~~~~~~~~~~~l~~~la~~~ 57 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYRE-KYGNPNSA---------------------H-G--MGIEANLHMEKAREKVAKVL 57 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHT-CCCCTTCS---------------------S-H--HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHh-cCCCCccc---------------------c-H--HHHHHHHHHHHHHHHHHHHc
Confidence 8999999999999999998776643 34455210 0 0 11112567789999999999
Q ss_pred CCCCCCceEEEecCHHHHHHHHHHhCC---CCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHH
Q 037063 193 NISEDDYTLVFTANQSSAFKLLAESYP---FYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKL 268 (588)
Q Consensus 193 ga~~~e~~vvft~g~T~al~lv~~s~~---~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l 268 (588)
|+++++ |++|+|+|+|+.+++.++. +++||+|++ ...|++ .... ...++..|++++.++.+ +++.+|+++|
T Consensus 58 g~~~~~--v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~-~~~~-~~~~~~~g~~~~~v~~~-~~~~~d~~~l 132 (384)
T 1eg5_A 58 GVSPSE--IFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKA-VLET-MKYLSMKGFKVKYVPVD-SRGVVKLEEL 132 (384)
T ss_dssp TSCGGG--EEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHH-HHHH-HHHHHHTTCEEEECCBC-TTSCBCHHHH
T ss_pred CCCCCe--EEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchH-HHHH-HHHHHhcCCEEEEEccC-CCCccCHHHH
Confidence 997654 9999999999999999984 278999765 455654 3322 33446679999999997 6788999999
Q ss_pred HHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcC--cEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccC
Q 037063 269 MKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKG--WHVLLDATALGSKDMDTLGLSLFKPDFLICSFY 345 (588)
Q Consensus 269 ~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g--~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~ 345 (588)
+++|+ +++++|++++++|+||..+|+++| ++|+++| +++|+|+++..+. .++++..+.+|++++|+|
T Consensus 133 ~~~i~--------~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~--~~~~~~~~~~di~~~s~s 202 (384)
T 1eg5_A 133 EKLVD--------EDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGK--IPFSLEKLEVDYASFSAH 202 (384)
T ss_dssp HHHCC--------TTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTT--SCCCCTTTCCSEEEEEGG
T ss_pred HHHhC--------CCCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCC--cccCchhcCCCEEEecHH
Confidence 99997 679999999999999999999999 9999999 9999999987652 233444446899999999
Q ss_pred ccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHH
Q 037063 346 KIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADA 425 (588)
Q Consensus 346 K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~ 425 (588)
|++| |.|+|++++++++ .+.+...++ +. . ..+ ..++.+.... +++..+|+.+.+
T Consensus 203 K~~g--~~G~G~~~~~~~~--~~~~~~~~~-~~--------------~---~~~-~~~~~~~~~~---~a~~~al~~~~~ 256 (384)
T 1eg5_A 203 KFHG--PKGVGITYIRKGV--PIRPLIHGG-GQ--------------E---RGL-RSGTQNVPGI---VGAARAMEIAVE 256 (384)
T ss_dssp GGTS--CTTCEEEEECTTS--CCCCSBCSS-CT--------------T---TTT-BCSCCCHHHH---HHHHHHHHHHHH
T ss_pred HhcC--CCceEEEEEcCCC--ccccccccC-cc--------------c---ccc-cCCCCChHHH---HHHHHHHHHHHH
Confidence 9988 7789999999875 233333221 10 0 012 3456665554 566678887654
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEec
Q 037063 426 LGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLS 505 (588)
Q Consensus 426 ~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~ 505 (588)
+++++.++.+++++++.+.|.+. +++++.+.. ...+.++.|.+.+ ++...+.+.|.++||.++
T Consensus 257 -~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~ 319 (384)
T 1eg5_A 257 -ELSEAAKHMEKLRSKLVSGLMNL----------GAHIITPLE-ISLPNTLSVSFPN-----IRGSTLQNLLSGYGIYVS 319 (384)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHTT----------TCEECSCTT-SBCTTEEEEECTT-----CCHHHHHHHHHHTTEECB
T ss_pred -hHHHHHHHHHHHHHHHHHHhCCC----------CeEEeCCcc-cCCCCEEEEEeCC-----CCHHHHHHHHhhCCeEEe
Confidence 57899999999999999999873 456666532 1134677887754 457778888889999999
Q ss_pred cccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 506 CGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 506 ~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
.|..|.+...... ..+... +. ....+.+.||+|++.+++.||++++++.|++++++.
T Consensus 320 ~g~~~~~~~~~~~-----~~~~~~-g~-~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 376 (384)
T 1eg5_A 320 TSSACTSKDERLR-----HVLDAM-GV-DRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFL 376 (384)
T ss_dssp C-----------------CHHHHT-TC-CHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccCCCCcch-----HHHHHc-CC-ChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9876643210000 000100 00 000012389999999999999999999999988753
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=303.55 Aligned_cols=368 Identities=14% Similarity=0.065 Sum_probs=253.0
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
++.+|||+++.++.|+.+++++.+.+.. .++||++ ...++....+.++++|++++
T Consensus 19 ~~~iyld~~~~~~~~~~v~~a~~~~~~~-~~~~~~~------------------------~~~~~~~~~~~~~~l~~~la 73 (400)
T 3vax_A 19 SHMTYLDAAATTRVDQRVADIVLHWMTA-EFGNAGS------------------------RHEYGIRAKRGVERAREYLA 73 (400)
T ss_dssp ---CCCCCCCCSSSCHHHHHHHHHHHHH-HHSCSSC------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEecCCCCCCCCHHHHHHHHHHHHh-ccCCCcc------------------------cchhHHHHHHHHHHHHHHHH
Confidence 7899999999999999999998766532 3455521 00111122577889999999
Q ss_pred HHhCCCCCCceEEEecCHHHHHHHHHHhCCC----CCCC-eEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCcc
Q 037063 190 DFMNISEDDYTLVFTANQSSAFKLLAESYPF----YSNP-RLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRI 263 (588)
Q Consensus 190 ~~lga~~~e~~vvft~g~T~al~lv~~s~~~----~~gd-~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i 263 (588)
+++|+++++ |++|+|+|+|+.+++.++ . ++|| +|+ ...+|++ .... ...++..|++++.++++ +++.+
T Consensus 74 ~~~~~~~~~--v~~~~g~t~al~~~~~~l-~~~~~~~gd~~Vl~~~~~~~~-~~~~-~~~~~~~g~~~~~v~~~-~~~~~ 147 (400)
T 3vax_A 74 STVSAEPDE--LIFTSGATESNNIALLGL-APYGERTGRRHIITSAIEHKA-VLEP-LEHLAGRGFEVDFLTPG-PSGRI 147 (400)
T ss_dssp HHTTCCGGG--EEEESCHHHHHHHHHHTT-HHHHHHHTCCEEEEETTSCHH-HHHH-HHHHHTTTCEEEEECCC-TTCCC
T ss_pred HHcCCCCCc--EEEeCCHHHHHHHHHHHH-HHhhccCCCCEEEECccccHh-HHHH-HHHHHhcCCeEEEEccC-CCCCc
Confidence 999997654 999999999999999998 5 7899 866 5566776 3332 23345689999999998 67889
Q ss_pred CHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEe
Q 037063 264 HSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLIC 342 (588)
Q Consensus 264 ~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~ 342 (588)
|+++|+++|+ +++++|++++++|+||.+.|+++| ++|+++|+++|+|+++..+ ...+++... +|++++
T Consensus 148 d~~~l~~~i~--------~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~--~~~~~~~~~-~d~~~~ 216 (400)
T 3vax_A 148 SVEGVMERLR--------PDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYG--KVPGDLTTP-IDMISI 216 (400)
T ss_dssp CHHHHHTTCC--------TTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTT--TSGGGGGSC-CSEEEE
T ss_pred CHHHHHHhcC--------CCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcC--CCCcChhhc-CcEEEE
Confidence 9999999887 689999999999999999999999 9999999999999999877 334455555 899999
Q ss_pred ccCccCCCCCCceEEEE-EeCcch----hcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHH
Q 037063 343 SFYKIFGENPSGFGCLF-VKKSSA----SVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVEC 417 (588)
Q Consensus 343 S~~K~~G~~P~G~G~L~-v~~~~~----~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~ 417 (588)
|+||++| |.|+|+++ ++++.+ ..+.+...++ +. ...+ ..||++..+. +++.
T Consensus 217 s~~K~~g--~~g~g~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~-~~~~~~~~~~---~a~~ 272 (400)
T 3vax_A 217 SGHKIGA--PKGVGALVTRRREEMDDERVPLEPIMFGG-GQ-----------------ERKL-RPGTLPVPLI---MGLA 272 (400)
T ss_dssp ETGGGTS--CSSCEEEEECBCSSSTTCBCCCCCSSCSS-CT-----------------GGGT-SCSCCCHHHH---HHHH
T ss_pred eHHHhCC--CCceEEEEEecchhccccccccCceecCC-Cc-----------------eeee-ecCCCCHHHH---HHHH
Confidence 9999888 78999999 988432 2344444331 10 0023 5677777664 6677
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHH
Q 037063 418 KGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLA 497 (588)
Q Consensus 418 ~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l 497 (588)
.+++.+.+ +++++.++.+++++++.+.|. + ++++++.+.. ...+.++.|.+.+ .+...+.+.|
T Consensus 273 ~al~~~~~-~~~~~~~~~~~~~~~l~~~L~-~---------~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~l~~~L 335 (400)
T 3vax_A 273 EAAKIFEA-EHAQWQVAAQDLRSRLLAGLA-S---------TSFQVNGDQD-HVVPHILNLSFED-----VDAEAFLVTL 335 (400)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHT-T---------TTCEECSCTT-SBCTTEEEEECTT-----CCHHHHHHHH
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHHHHHhhC-C---------CCEEEeCCcc-cCCCCEEEEEeCC-----CCHHHHHHHH
Confidence 88887766 689999999999999999998 4 4677777643 1234688888765 4577888888
Q ss_pred HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec-CCCCCHHHHHHHHHHHHHhhhh
Q 037063 498 DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL-GCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 498 ~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl-g~~~t~eDv~~li~~l~~~l~~ 568 (588)
. +||.++.|..|.+....... .+... +. ......+.||+|+ +.+++.||++++++.|++++++
T Consensus 336 ~-~gi~v~~g~~~~~~~~~~~~-----~~~~~-g~-~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 336 K-DLVAVATGSASTSASFTPSH-----VLRAM-GL-PEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp H-HHHHHTTTTEEEEEEECCHH-----HHHTT-TC-CHHHHTSEEEEEEEEC--------------------
T ss_pred h-cCcEEEecccccCCCCCccH-----HHHHc-CC-CccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 8 99999999888653221110 00000 00 0000013999999 9999999999999999987753
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-32 Score=286.08 Aligned_cols=370 Identities=12% Similarity=0.066 Sum_probs=269.5
Q ss_pred HHHhhhccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCch
Q 037063 98 RIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEE 177 (588)
Q Consensus 98 ~iR~~~f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~ 177 (588)
..|+ .||.|. .+.+|+|+.|..+.|+.+++++.+.+... +....
T Consensus 7 ~~~~-~~~~~~-~~~~~~~~~g~~~~~~~v~~a~~~~~~~~----------------------------------~~~~~ 50 (393)
T 2huf_A 7 PPAV-LREPLV-TPNKLLMGPGPSNAPQRVLDAMSRPILGH----------------------------------LHPET 50 (393)
T ss_dssp CCGG-GGSCCC-CCCCEECSSSCCCCCHHHHHHTTSCCCCT----------------------------------TSHHH
T ss_pred chhh-hhcccC-CCCeEEecCCCCCCCHHHHHHHHhhhccC----------------------------------CCHHH
Confidence 3444 588886 78899999999999999999875433110 00012
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.+..+++|+.+++++|++++ +.|++|+|+|+|+.+++.++ +++||+|+ ....|++ ..+ ...++..|++++.+++
T Consensus 51 ~~~~~~l~~~la~~~g~~~~-~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~--~~~-~~~~~~~g~~~~~v~~ 125 (393)
T 2huf_A 51 LKIMDDIKEGVRYLFQTNNI-ATFCLSASGHGGMEATLCNL-LEDGDVILIGHTGHWG--DRS-ADMATRYGADVRVVKS 125 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCCS-EEEEESSCHHHHHHHHHHHH-CCTTCEEEEEESSHHH--HHH-HHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCC-cEEEEcCcHHHHHHHHHHHH-hCCCCEEEEECCCcch--HHH-HHHHHHcCCeeEEEeC
Confidence 56788999999999999754 35999999999999999998 89999966 4556765 233 4556778999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCC-cceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKK-KRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSL 334 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~-~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~ 334 (588)
+ +++.+|+++|+++|+ + ++++|++++++|+||..+|+++| ++|+++|+++|+|+++..+. ..+++..
T Consensus 126 ~-~~~~~d~~~l~~~i~--------~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~--~~~~~~~ 194 (393)
T 2huf_A 126 K-VGQSLSLDEIRDALL--------IHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGG--APMFMDR 194 (393)
T ss_dssp C-TTCCCCHHHHHHHHH--------HHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTT--BCCCTTT
T ss_pred C-CCCCCCHHHHHHHHh--------ccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCC--CCcchhh
Confidence 7 567899999999998 4 78999999999999999999999 99999999999999988762 3344555
Q ss_pred CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCC-CceEeeecCCCcccccccccccccccCCCCCccchhhH
Q 037063 335 FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSV-STIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSK 413 (588)
Q Consensus 335 ~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~-~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~ 413 (588)
+++|++++|+||+++. |.|+|++++++++++.+....... ........ ....+......++ +.||++..++
T Consensus 195 ~~~d~~~~s~sK~l~g-~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~--- 266 (393)
T 2huf_A 195 WEIDAMYTGSQKVLGA-PPGITPVSFSHRAVERYKRRNTKVKVYYWDMSL---VGDYWGCFGRPRI-YHHTISSTLL--- 266 (393)
T ss_dssp TTCSEEECCSSSTTCC-CSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHH---HHHHTTCSSSCCC-CSCCCCHHHH---
T ss_pred cCccEEEECCCccccc-CCCeEEEEECHHHHHHHhhcCCCCceEEEchHH---HHhhhccccccCC-CCCCCCHHHH---
Confidence 5699999999996432 789999999998887765431000 00000000 0000000000134 5678887775
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc-cEEEEEeecCCCCCcCHHH
Q 037063 414 LVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG-PSLAFNVFDWNGTRIDPAL 492 (588)
Q Consensus 414 ~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg-~iv~f~~~~~~g~~i~~~~ 492 (588)
+++..+++.+.+.|++.+.++.+.+++++.+.|.++ +++++.+.. .++ .++.|.+.. | ++...
T Consensus 267 ~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~~--~~~~~~~~~~~~~--~--~~~~~ 330 (393)
T 2huf_A 267 YGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA----------GFELYADPK--DRLSTVTTIKVPQ--G--VDWLK 330 (393)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----------TCCBSSCGG--GBCTTEEEEECCT--T--CCHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc----------CCeeccCcc--ccCCcEEEEEcCC--C--CCHHH
Confidence 667778988877788999999999999999999985 244554421 133 477787752 1 45666
Q ss_pred HHHHH-HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec-CCCCCHHHHHHHHHHHHHhhhhh
Q 037063 493 VQKLA-DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL-GCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 493 v~~~l-~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl-g~~~t~eDv~~li~~l~~~l~~~ 569 (588)
+.+.| +++||.++.|..| .+...||+|+ ++.++.||++++++.|++++++.
T Consensus 331 ~~~~L~~~~gi~v~~g~~~--------------------------~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~ 383 (393)
T 2huf_A 331 AAQYAMKTYLVEISGGLGP--------------------------TAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAV 383 (393)
T ss_dssp HHHHHHHHHCEECBCCCGG--------------------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEecCccc--------------------------ccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHc
Confidence 76655 4569999987543 1112899999 54568999999999999988653
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=281.26 Aligned_cols=353 Identities=13% Similarity=0.080 Sum_probs=264.1
Q ss_pred eecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHhC
Q 037063 114 CFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMN 193 (588)
Q Consensus 114 yLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lg 193 (588)
++.+.+..++++.+++++.+.+.. .. +....+.++++|+++++++|
T Consensus 4 ~~~~~gp~~~~~~v~~a~~~~~~~----~~------------------------------~~~~~~~~~~~~~~la~~~~ 49 (384)
T 3zrp_A 4 LLLHVGPTTIKEDVLVAGLENNVG----FT------------------------------SKEFVEALAYSLKGLRYVMG 49 (384)
T ss_dssp --CCSSCSCCCHHHHHHTTCCSCC----TT------------------------------SHHHHHHHHHHHHHHHHHHT
T ss_pred eeccCCCCCCCHHHHHHhhccccc----cc------------------------------cHHHHHHHHHHHHHHHHHhC
Confidence 456677888899999987543311 00 00125778899999999999
Q ss_pred CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHHHH
Q 037063 194 ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMKKI 272 (588)
Q Consensus 194 a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i 272 (588)
++++.+.|+||+|+|+|+. ++.++ +++||+|+ ....|++. .+ ...++..|++++.++++ .++.+|+++|+++|
T Consensus 50 ~~~~~~~v~~~~g~t~al~-~~~~~-~~~gd~vi~~~~~~~~~--~~-~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i 123 (384)
T 3zrp_A 50 ASKNYQPLIIPGGGTSAME-SVTSL-LKPNDKILVVSNGVFGD--RW-EQIFKRYPVNVKVLRPS-PGDYVKPGEVEEEV 123 (384)
T ss_dssp CCTTSEEEEEESCHHHHHH-HGGGG-CCTTCEEEEECSSHHHH--HH-HHHHTTSSCEEEEECCS-TTCCCCHHHHHHHH
T ss_pred CCCCCcEEEEcCCcHHHHH-HHHhh-cCCCCEEEEecCCcchH--HH-HHHHHHcCCcEEEecCC-CCCCCCHHHHHHHH
Confidence 9863346999999999999 88888 89999966 45666542 23 45667889999999998 57789999999999
Q ss_pred hhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCCCC
Q 037063 273 VGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGEN 351 (588)
Q Consensus 273 ~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G~~ 351 (588)
++ .++++|++++++|+||.+.|+++| ++|+++|+++|+|+++..+ ...+++..+++|++++|+||+++.
T Consensus 124 ~~-------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~--~~~~~~~~~~~d~~~~s~~K~~~~- 193 (384)
T 3zrp_A 124 RK-------SEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVG--AEEVKAEEWNVDVYLTASQKALGS- 193 (384)
T ss_dssp HH-------SCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTT--TSCCCTTTTTCSEEEEETTSTTCC-
T ss_pred Hh-------CCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECccccc--CccccccccCCCEEEecCcccccC-
Confidence 82 379999999999999999999999 9999999999999998876 334455555699999999997653
Q ss_pred CCceEEEEEeCcchhcc-cCCCCCCCceEeeecCCCcccccccccccccc-----cCCCCCccchhhHHHHHHHHHHHHH
Q 037063 352 PSGFGCLFVKKSSASVL-SGSTSSVSTIMGIEPSFSEIIELETLDESSQS-----KFPESSISGVSSKLVECKGLDHADA 425 (588)
Q Consensus 352 P~G~G~L~v~~~~~~~l-~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~-----e~GT~~~~~~~~~~al~~aL~~l~~ 425 (588)
|.|+|+++++++.++.+ ++....+ ... +...+.... ..|+ ..||++.... +++..+++++..
T Consensus 194 ~~g~g~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~-~~~~~~~~~~~g~~~~~~~---~a~~~al~~~~~ 261 (384)
T 3zrp_A 194 AAGLGLLLLSPKALSILDSQNSIAG-YYL-------DLRNWLPVM-RGAEEGKAAYFATPPVHVI---LQLAEAFRLIEK 261 (384)
T ss_dssp CSSEEEEEECHHHHHHHHHCCCSCC-STT-------CHHHHHHHH-HHHHTTCCCCSSCCCHHHH---HHHHHHHHHHHH
T ss_pred CCceEEEEECHHHHHHhcCCCCCCc-ccc-------cHHHHHHHH-HhhcccCCCcCCCCCHHHH---HHHHHHHHHHHh
Confidence 78999999999988877 4422110 000 000000000 0120 2257776664 677789999888
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEec
Q 037063 426 LGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLS 505 (588)
Q Consensus 426 ~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~ 505 (588)
.|++++.++.+.+++++.+.|.++ +++++.+......+.++.|.+.+ .+...+.+.|.++||.++
T Consensus 262 ~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~ 326 (384)
T 3zrp_A 262 EGIENRIKRHTMVASAIRAGLEAL----------GLEIVARRPESYSNTVTGVILKV-----ADPQKVLAGTVNEGVEFA 326 (384)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHT----------TCCBSCSSGGGBCSSEEEEECSS-----SCHHHHHHHHHTTTCCCE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHC----------CCeEccCcccccCccEEEEECCC-----CCHHHHHHHHHHCCEEEe
Confidence 889999999999999999999984 34455543112235677788765 457788888888899999
Q ss_pred cccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhhh
Q 037063 506 CGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDADF 570 (588)
Q Consensus 506 ~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~~ 570 (588)
.|.+|. . ..||++++.+++.|||+++++.|++++++.-
T Consensus 327 ~g~~~~-------------------------~--~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 327 PGVHPA-------------------------F--KYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp ECCCTT-------------------------C--CEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCC-------------------------c--CEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 886542 1 3899999999999999999999999987643
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=283.63 Aligned_cols=356 Identities=9% Similarity=0.080 Sum_probs=265.2
Q ss_pred eeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHH
Q 037063 112 YVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDF 191 (588)
Q Consensus 112 ~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~ 191 (588)
..|+++.|...+|+.+++++.+.+.....+..+ .. ....+.++++|++++++
T Consensus 4 ~~~~~~p~p~~~~~~v~~~~~~~~~~~~~~~~~----------------------~~------~~~~~~~~~~~~~la~~ 55 (362)
T 3ffr_A 4 NKIYFTPGPSELYPTVRQHMITALDEKIGVISH----------------------RS------KKFEEVYKTASDNLKTL 55 (362)
T ss_dssp CCEEECSSSCCCCTTHHHHHHHHHHTTTTTSCT----------------------TS------HHHHHHHHHHHHHHHHH
T ss_pred cceeccCCCcCCCHHHHHHHHHHhcCCccCcCC----------------------CC------HHHHHHHHHHHHHHHHH
Confidence 457888899999999997776555322211110 00 01147789999999999
Q ss_pred hCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHHH
Q 037063 192 MNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMKK 271 (588)
Q Consensus 192 lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~ 271 (588)
+|++ +.+.|++|+|+|+|+.+++.++ .++ +.+++..++++ ..+ ...++..|++++.++.+ .++.+|+++|+
T Consensus 56 ~g~~-~~~~v~~~~g~t~al~~~~~~l-~~~-~~i~~~~~~~~--~~~-~~~~~~~g~~~~~v~~~-~~~~~d~~~l~-- 126 (362)
T 3ffr_A 56 LELP-SNYEVLFLASATEIWERIIQNC-VEK-KSFHCVNGSFS--KRF-YEFAGELGREAYKEEAA-FGKGFYPADIT-- 126 (362)
T ss_dssp TTCC-TTEEEEEESCHHHHHHHHHHHH-CSS-EEEEEECSHHH--HHH-HHHHHHTTCEEEEEECC-TTCCCCGGGCC--
T ss_pred hCCC-CCcEEEEeCCchHHHHHHHHhc-cCC-cEEEEcCcHHH--HHH-HHHHHHhCCCeEEEecC-CCCCCCHHHHh--
Confidence 9995 3346999999999999999998 566 44666767664 333 45667889999999987 66789999988
Q ss_pred HhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHc-CcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCC
Q 037063 272 IVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEK-GWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFG 349 (588)
Q Consensus 272 i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~-g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G 349 (588)
++ +++++|++++++|+||.++|+++| ++|+++ |+++|+|+++..+ ..++++.. +|++++|+||++|
T Consensus 127 ~~--------~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~--~~~~~~~~--~d~~~~s~~K~~~ 194 (362)
T 3ffr_A 127 VP--------ADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLP--YPKFDWTK--IDSVFFSVQKCFG 194 (362)
T ss_dssp CC--------TTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTT--SSCCCTTS--CSEEEEETTSTTC
T ss_pred cc--------CCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccC--CcccChhH--CcEEEEecccccC
Confidence 55 789999999999999999999999 999999 9999999998876 33444444 8999999999888
Q ss_pred CCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHH
Q 037063 350 ENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLI 429 (588)
Q Consensus 350 ~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~ 429 (588)
. |.|+|++++++++++.+.+...|+ +...... +...+.... .++...+|++..+. +++..+++.+...|++
T Consensus 195 ~-~~G~g~~~~~~~~~~~~~~~~~gg-~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~al~~~~~~~~~ 265 (362)
T 3ffr_A 195 L-PAGLGVWILNDRVIEKSKALLAKR-KSIGTYH---TIPSMLEKA-RVNQTPETPNAMNI---FLLGKVTGDMLQISAD 265 (362)
T ss_dssp C-CSCCEEEEEEHHHHHHHHHHHHTT-CCCCSTT---SHHHHHHHH-TTTCCSSCCCHHHH---HHHHHHHHHHHHHCHH
T ss_pred C-CCceEEEEECHHHHHHhhhccccC-CCCcccc---cHHHHHHHh-hcCCCCCCchHHHH---HHHHHHHHHHHHccHH
Confidence 4 789999999999887776544332 2211100 000000000 01213667777664 6777889988887899
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccc
Q 037063 430 LISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFL 509 (588)
Q Consensus 430 ~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~ 509 (588)
++.++.+.+++++.+.|.++ |+++++.+......+.++.|.+.+ +...+.+.|.++||.++.|..
T Consensus 266 ~~~~~~~~~~~~l~~~L~~~---------~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~g~~ 330 (362)
T 3ffr_A 266 GIRKQTEEKAALINTYIESS---------KVFSFGVEDAKLRSMTTIVANTTM------LPGEINKILEPFDMAVGAGYG 330 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---------SSEEESSSCGGGBCSSEEEEEESS------CHHHHHHHHGGGTEEEEECSG
T ss_pred HHHHHHHHHHHHHHHHHHHc---------cCceeccCChhhcCCceEEEecCC------CHHHHHHHHHHCCeEEecCcc
Confidence 99999999999999999984 688888754322345788888764 367777777777999998854
Q ss_pred cCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 510 QNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 510 c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
| .+...||+|++.+++.|||++++++|++++
T Consensus 331 ~--------------------------~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 331 S--------------------------KKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp G--------------------------GTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred c--------------------------cCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4 112389999999999999999999999875
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-32 Score=285.82 Aligned_cols=367 Identities=14% Similarity=0.061 Sum_probs=269.5
Q ss_pred hhHHHHHhhhccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 037063 94 DQADRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQY 173 (588)
Q Consensus 94 ~~~~~iR~~~f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 173 (588)
..++++|. +||.+. ...+|||+++.++.++.+++++.+.+.. + |
T Consensus 18 ~~~~~~r~-~~~~~~-~~~~~l~~~~~~~~~~~v~~a~~~~~~~------~----------------------------~ 61 (393)
T 1vjo_A 18 SINDNQRL-QLEPLE-VPSRLLLGPGPSNAHPSVLQAMNVSPVG------H----------------------------L 61 (393)
T ss_dssp CCCCTTCC-CCCSCC-CCCCEECSSSCCCCCHHHHHHHSSCCCC------T----------------------------T
T ss_pred eecchhhh-cCCccC-CccceeccCCCCCCCHHHHHHHhccccc------c----------------------------c
Confidence 35567886 698775 5678999999999999999997543311 0 1
Q ss_pred CCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEE
Q 037063 174 GSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 174 g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
+....++.+++++.+++++|++++ +.|+||+|+|+|+.+++.++ +++||+|++ ...|+++ .+ ...++..|++++
T Consensus 62 ~~~~~~~~~~~~~~la~~~g~~~~-~~v~~t~g~t~al~~~~~~~-~~~gd~Vl~~~~~~~~~--~~-~~~~~~~g~~~~ 136 (393)
T 1vjo_A 62 DPAFLALMDEIQSLLRYVWQTENP-LTIAVSGTGTAAMEATIANA-VEPGDVVLIGVAGYFGN--RL-VDMAGRYGADVR 136 (393)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCCS-CEEEESSCHHHHHHHHHHHH-CCTTCEEEEEESSHHHH--HH-HHHHHHTTCEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC-cEEEEeCchHHHHHHHHHhc-cCCCCEEEEEcCChhHH--HH-HHHHHHcCCceE
Confidence 111257788999999999999754 25999999999999999999 899999664 4455532 12 456677899999
Q ss_pred EEeccCCCCccCHHHHHHHHhhhccccCCC-cceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCC
Q 037063 253 SAEFAWPNLRIHSGKLMKKIVGKRKKKKKK-KRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTL 330 (588)
Q Consensus 253 ~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~-~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l 330 (588)
.++.+ +++.+|+++|+++++ + ++++|++++++|+||.+.|+++| ++|+++|+++|+|+++..+ ..++
T Consensus 137 ~v~~~-~~~~~d~~~l~~~l~--------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g--~~~~ 205 (393)
T 1vjo_A 137 TISKP-WGEVFSLEELRTALE--------THRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLG--GVPI 205 (393)
T ss_dssp EEECC-TTCCCCHHHHHHHHH--------HHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTT--TSCC
T ss_pred EEecC-CCCCCCHHHHHHHHh--------hCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCcccc--CcCC
Confidence 99998 567899999999998 4 78999999999999999999999 9999999999999998866 2344
Q ss_pred CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCC---CCCC-CceEeeecCCCcccccccccccccccCCCCC
Q 037063 331 GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGS---TSSV-STIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~---~~g~-~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
++...++|+++.|+||+++. |.|+|++++++++++.+... ..+. .+.. .. ..+ ... ..+ ..|+++
T Consensus 206 ~~~~~~~di~~~s~sK~l~~-~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~-~~~-~~~-~~g~~~ 274 (393)
T 1vjo_A 206 FLDAWGVDLAYSCSQKGLGC-SPGASPFTMSSRAIEKLQRRRTKVANWYLDMN-LL------GKY-WGS-ERV-YHHTAP 274 (393)
T ss_dssp CTTTTTCSEEECCSSSTTCS-CSSCEEEEECHHHHHHHHTCSSCCSCSTTCHH-HH------HHH-HST-TCC-CCSCCC
T ss_pred cccccCccEEEEcCcccccC-CCceEEEEECHHHHHHHhccCCCCCceecCcH-hh------hhh-hcc-CCC-CCCCCC
Confidence 55556699999999997775 66999999999887766321 1100 0000 00 000 000 022 344666
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGT 486 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~ 486 (588)
.... +++..+|+.+.+.+++++.++.+.+++++.+.|.++ +++++.|.. ...+.++.|.+++ +
T Consensus 275 ~~~~---~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~~-~~~~~~~~~~~~~--~- 337 (393)
T 1vjo_A 275 INLY---YALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI----------GLSLHVEKE-YRLPTLTTVCIPD--G- 337 (393)
T ss_dssp HHHH---HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----------TCCBSSCGG-GBCSSEEEEECCT--T-
T ss_pred HHHH---HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc----------CCcccCCcc-ccCCcEEEEEcCC--C-
Confidence 6654 667788888776688999999999999999999985 244555422 1124677777742 1
Q ss_pred CcCHHHHHHHHHhC-CcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec-CCCCCHHHHHHHHHHHHH
Q 037063 487 RIDPALVQKLADRH-NISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL-GCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 487 ~i~~~~v~~~l~~~-gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl-g~~~t~eDv~~li~~l~~ 564 (588)
.+...+.+.|.++ ||.++.|..|. +.+.+|+|+ ++.++.||++++++.|++
T Consensus 338 -~~~~~~~~~l~~~~gi~v~~g~~~~--------------------------~~~~iRis~~~~~~~~~~i~~~~~~l~~ 390 (393)
T 1vjo_A 338 -VDGKAVARRLLNEHNIEVGGGLGEL--------------------------AGKVWRVGLMGFNSRKESVDQLIPALEQ 390 (393)
T ss_dssp -CCHHHHHHHHHHHHCEECEECCGGG--------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHhhCCEEEecCcccc--------------------------CCCEEEEeCCccCChHHHHHHHHHHHHH
Confidence 4566776666655 99999885431 122899995 666788899999999998
Q ss_pred hhh
Q 037063 565 FLD 567 (588)
Q Consensus 565 ~l~ 567 (588)
+++
T Consensus 391 ~l~ 393 (393)
T 1vjo_A 391 VLR 393 (393)
T ss_dssp HHC
T ss_pred HhC
Confidence 764
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-31 Score=280.03 Aligned_cols=366 Identities=13% Similarity=0.071 Sum_probs=264.0
Q ss_pred hccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 103 DYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 103 ~f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
.||.|. .+.+|+++.+...+++.+++++.+.+... +........+
T Consensus 10 ~~~~~~-~~~~~~~~~~p~~~~~~v~~a~~~~~~~~----------------------------------~~~~~~~~~~ 54 (396)
T 2ch1_A 10 LRNPLI-IPEKIMMGPGPSNCSKRVLTAMTNTVLSN----------------------------------FHAELFRTMD 54 (396)
T ss_dssp GSSCCC-CCCCBCCSSSSCCCCHHHHHHTTSCCCCT----------------------------------TCHHHHHHHH
T ss_pred cCCCCC-CCcceeecCCCCCCCHHHHHHhccccccC----------------------------------CChhHHHHHH
Confidence 488875 67789999998899999999874332100 0001135678
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCC
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNL 261 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~ 261 (588)
++|+.+++++|++++ +.|++|+|+|+|+.+++.++ +++||+|+ ....|++ +.+ ...++..|++++.++.+ .++
T Consensus 55 ~l~~~la~~~~~~~~-~~v~~~~g~t~al~~~~~~~-~~~gd~vl~~~~~~~~--~~~-~~~~~~~g~~~~~v~~~-~~~ 128 (396)
T 2ch1_A 55 EVKDGLRYIFQTENR-ATMCVSGSAHAGMEAMLSNL-LEEGDRVLIAVNGIWA--ERA-VEMSERYGADVRTIEGP-PDR 128 (396)
T ss_dssp HHHHHHHHHHTCCCS-CEEEESSCHHHHHHHHHHHH-CCTTCEEEEEESSHHH--HHH-HHHHHHTTCEEEEEECC-TTS
T ss_pred HHHHHHHHHhCCCCC-cEEEECCcHHHHHHHHHHHh-cCCCCeEEEEcCCccc--HHH-HHHHHHcCCceEEecCC-CCC
Confidence 999999999999765 25999999999999999999 89999966 4555654 333 34667889999999997 577
Q ss_pred ccCHHHHHHHHhhhccccCCC-cceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcE
Q 037063 262 RIHSGKLMKKIVGKRKKKKKK-KRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDF 339 (588)
Q Consensus 262 ~i~~e~l~~~i~~~~~~~~~~-~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~ 339 (588)
.+|+++|+++++ + ++++|++++++|+||..+|+++| ++|+++|++||+|+++..+ ..++++..+++|+
T Consensus 129 ~~d~~~l~~~l~--------~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g--~~~~~~~~~~~d~ 198 (396)
T 2ch1_A 129 PFSLETLARAIE--------LHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLC--GVPFYMDKWEIDA 198 (396)
T ss_dssp CCCHHHHHHHHH--------HHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBT--TBCCCTTTTTCCE
T ss_pred CCCHHHHHHHHH--------hCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEcccccc--CCccchhhcCcCE
Confidence 899999999998 4 68999999999999999999999 9999999999999998876 2344555566899
Q ss_pred EEeccCccCCCCCCceEEEEEeCcchhcccCCC--CCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHH
Q 037063 340 LICSFYKIFGENPSGFGCLFVKKSSASVLSGST--SSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVEC 417 (588)
Q Consensus 340 vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~--~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~ 417 (588)
++.|+||+++. |.|+|+++++++.++.+.... .+. ...+... . ...+......++ ..||++.... +++.
T Consensus 199 ~~~s~~K~~~~-~~g~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~-~~~~~~~~~~~~-~~~~~~~~~~---~a~~ 269 (396)
T 2ch1_A 199 VYTGAQKVLGA-PPGITPISISPKALDVIRNRRTKSKV-FYWDLLL--L-GNYWGCYDEPKR-YHHTVASNLI---FALR 269 (396)
T ss_dssp EECCCC-CCCC-CSSCEEEEECHHHHHHHHTCSSCCSC-GGGCHHH--H-HHHTTCSSSCCC-CCCCCCHHHH---HHHH
T ss_pred EEEcCCccccC-CCCeEEEEECHHHHHhhhhccCcccc-eEechHH--H-HHhhhhhcccCC-CCCCCcHHHH---HHHH
Confidence 99999996553 789999999998877664321 010 0000000 0 000000000123 4567776654 5667
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHH
Q 037063 418 KGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLA 497 (588)
Q Consensus 418 ~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l 497 (588)
.+|+.+.+.+++++.++.+++++++.+.|.++ +++++.+......+.++.|.++. | ++...+.+.|
T Consensus 270 ~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~L 335 (396)
T 2ch1_A 270 EALAQIAEEGLENQIKRRIECAQILYEGLGKM----------GLDIFVKDPRHRLPTVTGIMIPK--G--VDWWKVSQYA 335 (396)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH----------TCCBSSCSGGGBCTTEEEEECCT--T--CCHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC----------CCeeccCCccccCCceEEEEcCC--C--CCHHHHHHHH
Confidence 88888766688999999999999999999985 24455543211223477887752 1 4566776655
Q ss_pred H-hCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec-CCCCCHHHHHHHHHHHHHhhhh
Q 037063 498 D-RHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL-GCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 498 ~-~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl-g~~~t~eDv~~li~~l~~~l~~ 568 (588)
. ++||.++.|..| .+...||+|+ ++.++.||++++++.|++++++
T Consensus 336 ~~~~gi~v~~g~~~--------------------------~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~ 382 (396)
T 2ch1_A 336 MNNFSLEVQGGLGP--------------------------TFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA 382 (396)
T ss_dssp HHHHCBCCBCCCGG--------------------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred HHhCCEEEecCccc--------------------------cCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHH
Confidence 4 569999887533 1112899999 5677999999999999998875
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-31 Score=273.03 Aligned_cols=345 Identities=13% Similarity=0.121 Sum_probs=256.0
Q ss_pred eecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHhC
Q 037063 114 CFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMN 193 (588)
Q Consensus 114 yLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lg 193 (588)
+|.++|.++.|+.+++++.+.+.. + ++....+.++++|+.+++++|
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~~~~~------~----------------------------~~~~~~~~~~~l~~~la~~~g 47 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLRPMRG------H----------------------------LDPEVLRVNRAIQERLAALFD 47 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGSCCCC------T----------------------------TCHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCCCHHHHHHHhccccc------c----------------------------cCHHHHHHHHHHHHHHHHHhC
Confidence 466788889999999987544321 0 000124668899999999999
Q ss_pred CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHHHH
Q 037063 194 ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMKKI 272 (588)
Q Consensus 194 a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i 272 (588)
++.+.+.|+||+|+|+|+.+++.++ .+ |+|+ ...+|++. .+ ...++..|++++.++++ +++.+|+++|++++
T Consensus 48 ~~~~~~~v~~t~g~t~a~~~~~~~~-~~--d~vl~~~~~~~~~--~~-~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~l 120 (353)
T 2yrr_A 48 PGEGALVAALAGSGSLGMEAGLANL-DR--GPVLVLVNGAFSQ--RV-AEMAALHGLDPEVLDFP-PGEPVDPEAVARAL 120 (353)
T ss_dssp CCTTCEEEEESSCHHHHHHHHHHTC-SC--CCEEEEECSHHHH--HH-HHHHHHTTCCEEEEECC-TTSCCCHHHHHHHH
T ss_pred CCCCCceEEEcCCcHHHHHHHHHHh-cC--CcEEEEcCCCchH--HH-HHHHHHcCCceEEEeCC-CCCCCCHHHHHHHH
Confidence 9633346999999999999999988 55 7755 55677752 33 45667889999999998 67789999999999
Q ss_pred hhhccccCCC-cceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCCC
Q 037063 273 VGKRKKKKKK-KRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGE 350 (588)
Q Consensus 273 ~~~~~~~~~~-~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G~ 350 (588)
+ + ++++|++++++|+||..+|+++| ++|+++|+++|+|+++..+. .++++..+++|++++|+||+++.
T Consensus 121 ~--------~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~ 190 (353)
T 2yrr_A 121 K--------RRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGM--LPFSMRAMGVDYAFTGSQKCLSA 190 (353)
T ss_dssp H--------HSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCHHHHTCSEEECCTTSTTCC
T ss_pred H--------hCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCccccc--ccccccccCceEEEecCcccccC
Confidence 8 4 78999999999999999999999 99999999999999987652 23333334589999999995542
Q ss_pred CCCceEEEEEeCcchhcccC--CCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCH
Q 037063 351 NPSGFGCLFVKKSSASVLSG--STSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGL 428 (588)
Q Consensus 351 ~P~G~G~L~v~~~~~~~l~~--~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~ 428 (588)
|.|+|+++++++.++.++. .++. ... ........ .+ ..||++.... +++..+++.+.+.|+
T Consensus 191 -~~g~G~~~~~~~~~~~l~~~~~~~~--~~~---------~~~~~~~~-~~-~~~~~~~~~~---~a~~~al~~~~~~~~ 253 (353)
T 2yrr_A 191 -PPGLAPIAASLEARKAFTGKRGWYL--DLA---------RVAEHWER-GG-YHHTTPVLLH---YALLEALDLVLEEGV 253 (353)
T ss_dssp -CSSCEEEEECHHHHHHCCCCSCSTT--CHH---------HHHHHHTT-CC-CSSCCCHHHH---HHHHHHHHHHHHHCH
T ss_pred -CCceEEEEECHHHHHHhccCCCccc--cHH---------HHhhhhhc-CC-CCCCCCHHHH---HHHHHHHHHHHHhhH
Confidence 7799999999998877753 1110 000 00000000 12 3567776654 666788998887789
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEecccc
Q 037063 429 ILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGF 508 (588)
Q Consensus 429 ~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~ 508 (588)
+++.++.+++++++.+.|+++ +++++.+.. ..+.++.|.+++ + ++...+.+.|.++||.++.|.
T Consensus 254 ~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~~--~~~~~~~~~~~~--~--~~~~~~~~~l~~~gi~v~~g~ 317 (353)
T 2yrr_A 254 AARERRAREVYAWVLEELKAR----------GFRPYPKAS--PLPTVLVVRPPE--G--VDADRLVRALYAEGVAVAGGI 317 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----------TCEESCSSS--BCTTEEEEECCT--T--CCHHHHHHHHHHTTEECEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHC----------CCccccCcc--CCCeEEEEECCC--C--CCHHHHHHHHHHCCEEEeCCc
Confidence 999999999999999999884 356665421 235666787742 1 457778888888899999885
Q ss_pred ccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHH-HHHHHHHHhhhh
Q 037063 509 LQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTY-RLWAFVSRFLDA 568 (588)
Q Consensus 509 ~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~-~li~~l~~~l~~ 568 (588)
.|. +...+|+|++.+++.+|++ ++++.|+++++.
T Consensus 318 ~~~--------------------------~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 318 GPT--------------------------RGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp GGG--------------------------TTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred ccc--------------------------CCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 431 1128999998889999999 999999988753
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-31 Score=273.39 Aligned_cols=340 Identities=15% Similarity=0.084 Sum_probs=253.9
Q ss_pred eecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHhC
Q 037063 114 CFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMN 193 (588)
Q Consensus 114 yLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lg 193 (588)
||.++|.++.|+.+++++.+.+.. + .+....+.++++|+.+++++|
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~------~----------------------------~~~~~~~~~~~l~~~la~~~g 48 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLH------H----------------------------RTEAAREVFLKARGLLREAFR 48 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCC------T----------------------------TSHHHHHHHHHHHHHHHHHHT
T ss_pred ccccCCCCCCCHHHHHHhccCCCC------c----------------------------cCHHHHHHHHHHHHHHHHHhC
Confidence 899999999999999998654421 0 000114667899999999999
Q ss_pred CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHHHH
Q 037063 194 ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMKKI 272 (588)
Q Consensus 194 a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i 272 (588)
++++ .|++|+|+|+|+.+++.++ +++||+|++ ..+|++. .+ ...++..|++++.++++ +++.+|+++|++
T Consensus 49 ~~~~--~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~--~~-~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~-- 119 (352)
T 1iug_A 49 TEGE--VLILTGSGTLAMEALVKNL-FAPGERVLVPVYGKFSE--RF-YEIALEAGLVVERLDYP-YGDTPRPEDVAK-- 119 (352)
T ss_dssp CSSE--EEEEESCHHHHHHHHHHHH-CCTTCEEEEEECSHHHH--HH-HHHHHHTTCEEEEEECC-TTCCCCTTTSCC--
T ss_pred CCCc--eEEEcCchHHHHHHHHHhc-cCCCCeEEEEeCCchhH--HH-HHHHHHcCCceEEEeCC-CCCCCCHHHHhc--
Confidence 9754 5999999999999999998 899999664 5567652 23 45667789999999997 566788776653
Q ss_pred hhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHc--CcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCc-cC
Q 037063 273 VGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEK--GWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYK-IF 348 (588)
Q Consensus 273 ~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~--g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K-~~ 348 (588)
+++++|++++++|+||.++|+++| ++|+++ |+++|+|+++..+ ..++++..+++|++++|+|| ++
T Consensus 120 ---------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~--~~~~~~~~~~~d~~~~s~~K~~~ 188 (352)
T 1iug_A 120 ---------EGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLL--VGEVALEAMGVDAAASGSQKGLM 188 (352)
T ss_dssp ---------SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBT--TBCCCSGGGTCSEEEEESSSTTC
T ss_pred ---------cCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCcccc--CcceeccccCeeEEEecCccccc
Confidence 368899999999999999999999 999999 9999999998765 22344444458999999999 55
Q ss_pred CCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCH
Q 037063 349 GENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGL 428 (588)
Q Consensus 349 G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~ 428 (588)
| |.|+|+++++++.++.+.+ .+ ....... .+.. ....+ ..||++...+ +++..+++.+.+. +
T Consensus 189 ~--~~g~G~~~~~~~~~~~~~~--~~--~~~~~~~------~~~~-~~~~~-~~~~~~~~~~---~a~~~al~~~~~~-~ 250 (352)
T 1iug_A 189 C--PPGLGFVALSPRALERLKP--RG--YYLDLAR------ELKA-QKEGE-SAWTPAINLV---LAVAAVLEEVLPR-L 250 (352)
T ss_dssp C--CSCEEEEEECHHHHHTCCC--CS--STTCHHH------HHHH-HTTTC-CSSCCCHHHH---HHHHHHHHHHGGG-H
T ss_pred C--CCceeEEEECHHHHHHhhC--CC--ceeeHHH------HHhh-cccCC-CCCCCCHHHH---HHHHHHHHHHHHH-H
Confidence 5 7899999999988776655 11 1000000 0000 00022 4567776654 5667888887665 7
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEecccc
Q 037063 429 ILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGF 508 (588)
Q Consensus 429 ~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~ 508 (588)
+++.++.+++++++.+.|+++ +++++.+. ..+.++.|.+.+ | ++...+.+.|.++||.++.|.
T Consensus 251 ~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~---~~~~~~~~~~~~--~--~~~~~~~~~l~~~gi~v~~~~ 313 (352)
T 1iug_A 251 EEHLALKAWQNALLYGVGEEG----------GLRPVPKR---FSPAVAAFYLPE--G--VPYARVKEAFAQRGAVIAGGQ 313 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----------TCEESCSS---BCTTCEEEECCT--T--CCHHHHHHHHHTTTEECEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHC----------CCcccccc---cCCeEEEEEcCC--C--CCHHHHHHHHHHCCEEEEeCC
Confidence 899999999999999999984 35666542 246788888763 1 457778888888899998874
Q ss_pred ccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 509 LQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 509 ~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.+ .+...||+|++.+++.+|++++++.|++++++
T Consensus 314 ~~--------------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 347 (352)
T 1iug_A 314 GP--------------------------LKGKVFRLSLMGAYDRYEALGVAGMFREVLEE 347 (352)
T ss_dssp GG--------------------------GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred Cc--------------------------cCCCEEEEEccccCCHHHHHHHHHHHHHHHHH
Confidence 21 11228999999999999999999999998764
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-31 Score=277.53 Aligned_cols=352 Identities=10% Similarity=0.078 Sum_probs=248.4
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
.+.+|||++|.+++|+.+++++.+.+.. +.++.++. + ...+ ++....++.+++|++++
T Consensus 2 ~~~~~l~~~~~~~~~~~v~~a~~~~~~~--~~~~~~~~----------~------~~~~----~~~~~~~~~~~~~~~la 59 (362)
T 2c0r_A 2 SERAYNFNAGPAALPLEVLERAQAEFVD--YQHTGMSI----------M------EMSH----RGAVYEAVHNEAQARLL 59 (362)
T ss_dssp CCCCEECCSSSCCCCHHHHHHHHHTSSS--STTSSSCG----------G------GSCT----TSHHHHHHHHHHHHHHH
T ss_pred CcceeeccCCCCCCCHHHHHHHHHHHhh--hhhcCccc----------c------ccCC----CcHHHHHHHHHHHHHHH
Confidence 4679999999999999999998776642 12221100 0 0000 11112567889999999
Q ss_pred HHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccC--CCC-ccCH
Q 037063 190 DFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAW--PNL-RIHS 265 (588)
Q Consensus 190 ~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~--~~~-~i~~ 265 (588)
+++|++++...+++|+|+|+|+++++.++ +++||+|+ ....+++ ..+ ...++..| +++.++++. ..+ .++.
T Consensus 60 ~~~g~~~~~~~i~~t~g~t~a~~~~~~~l-~~~gd~vl~~~~~~~~--~~~-~~~~~~~g-~~~~v~~~~~~~~~~~~~~ 134 (362)
T 2c0r_A 60 ALLGNPTGYKVLFIQGGASTQFAMIPMNF-LKEGQTANYVMTGSWA--SKA-LKEAKLIG-DTHVAASSEASNYMTLPKL 134 (362)
T ss_dssp HHTTCCSSEEEEEESSHHHHHHHHHHHHH-CCTTCEEEEEECSHHH--HHH-HHHHHHHS-CEEEEEECGGGTTCSCCCG
T ss_pred HHhCCCCCcEEEEECCCchHHHHHHHHhc-CCCCCeEEEEecCcHh--HHH-HHHHHHhC-CeEEEecccccccccCCCH
Confidence 99999643123578899999999999999 79999965 4444443 223 34556679 999998862 122 2465
Q ss_pred HHHHHHHhhhccccCCCcceEEEEeCCCCCCCcc-CCHHHHHHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEecc
Q 037063 266 GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGAR-YSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSF 344 (588)
Q Consensus 266 e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~-~pl~~I~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~ 344 (588)
++++ ++ ++|++|++++++|+||.. .|+++| +|+++++|+++..+ ..++++.. .|++++|+
T Consensus 135 ~~~~--i~--------~~t~~v~~~~~~n~tG~~~~~l~~i-----~~~~vivD~a~~~~--~~~~~~~~--~d~~~~s~ 195 (362)
T 2c0r_A 135 QEIQ--LQ--------DNAAYLHLTSNETIEGAQFKAFPDT-----GSVPLIGDMSSDIL--SRPFDLNQ--FGLVYAGA 195 (362)
T ss_dssp GGCC--CC--------TTEEEEEEESEETTTTEECSSCCCC-----TTSCEEEECTTTTT--SSCCCGGG--CSEEEEET
T ss_pred HHcc--cC--------CCcCEEEEeCCcCccceeccccccc-----CCCEEEEEChhhcc--CCccchhH--CcEEEEec
Confidence 5543 44 689999999999999996 566655 89999999999887 33455544 49999999
Q ss_pred CccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHH
Q 037063 345 YKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHAD 424 (588)
Q Consensus 345 ~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~ 424 (588)
||++| |.|+|++++++++++.+.+.... ..+ ....... .. ..+|++...+ +++..+|+.+.
T Consensus 196 ~K~~g--~~G~G~l~~~~~~~~~l~~~~~~---~~~-------~~~~~~~---~~-~~~t~~~~~~---~a~~~al~~~~ 256 (362)
T 2c0r_A 196 QKNLG--PSGVTVVIVREDLVAESPKHLPT---MLR-------YDTYVKN---NS-LYNTPPSFGI---YMVNEVLKWIE 256 (362)
T ss_dssp TTTTC--CSSCEEEEEEGGGSSSCCTTSCG---GGC-------HHHHHHT---TT-CSSCCCHHHH---HHHHHHHHHHH
T ss_pred ccccc--CcCcEEEEEcHHHHhhccccCch---HHh-------HHHHhhc---cC-cCCCchHHHH---HHHHHHHHHHH
Confidence 99999 78999999999988776542111 000 0000000 01 3567776664 67789999888
Q ss_pred Hh-CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCc
Q 037063 425 AL-GLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNI 502 (588)
Q Consensus 425 ~~-G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI 502 (588)
+. |++.+.++.+++++++.+.|+++ +.+ +++.+.. ...++++.|.+.+ + .+...+.+.|.++||
T Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~--~--~~~~~~~~~L~~~gi 322 (362)
T 2c0r_A 257 ERGGLEGVQQANRKKASLIYDAIDQS---------GGFYRGCVDVD-SRSDMNITFRLAS--E--ELEKEFVKASEQEGF 322 (362)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHTS---------TTSSEESSCGG-GBCSSEEEEECSC--H--HHHHHHHHHHHHTTE
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHc---------CCccccCCChH-HcCCcEEEEEcCC--c--chHHHHHHHHHHCCC
Confidence 76 68999999999999999999985 223 5554321 1235677887753 1 345677788888999
Q ss_pred EeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 503 SLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 503 ~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.++.|..+ .+ .||+|++.+++.|||++++++|++++++
T Consensus 323 ~~~~g~~~--------------------------~~--~iRis~~~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 323 VGLKGHRS--------------------------VG--GLRASIYNAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp ESCBCCTT--------------------------TC--SEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred eeccCCCC--------------------------CC--EEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 88766322 12 7999999999999999999999998753
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-30 Score=275.68 Aligned_cols=365 Identities=11% Similarity=0.051 Sum_probs=268.2
Q ss_pred ccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 104 YFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 104 f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
|+.+. ....||...+-..+++.+++++.+.+. +.. . ....+.+++
T Consensus 6 ~~~~~-~~~~~~~~pgp~~~~~~v~~a~~~~~~----~~~------------------------~------~~~~~~~~~ 50 (411)
T 3nnk_A 6 FSQLN-PPSRLLMGPGPINADPRVLRAMSSQLI----GQY------------------------D------PAMTHYMNE 50 (411)
T ss_dssp SCSCC-CCCCEEESSSCCCCCHHHHHHHTSCCC----CTT------------------------C------HHHHHHHHH
T ss_pred ccccC-CccceeecCCCCCCCHHHHHHhhcccc----ccc------------------------c------HHHHHHHHH
Confidence 44443 456789999999999999998753321 000 0 011467889
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCc
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLR 262 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~ 262 (588)
+++++++++|++++ ..|++|+|+|+|+.+++.++ +++||+|+ ....|+++. +...++..|++++.++++ .++.
T Consensus 51 ~~~~la~~~~~~~~-~~v~~~~sgt~al~~~~~~~-~~~gd~Vl~~~~~~~~~~---~~~~~~~~g~~~~~v~~~-~~~~ 124 (411)
T 3nnk_A 51 VMALYRGVFRTENR-WTMLVDGTSRAGIEAILVSA-IRPGDKVLVPVFGRFGHL---LCEIARRCRAEVHTIEVP-WGEV 124 (411)
T ss_dssp HHHHHHHHHTCCCS-EEEEEESCHHHHHHHHHHHH-CCTTCEEEEEECSHHHHH---HHHHHHHTTCEEEEEECC-TTCC
T ss_pred HHHHHHHHhCCCCC-cEEEECCCcHHHHHHHHHHh-cCCCCEEEEecCCchHHH---HHHHHHHcCCeEEEEecC-CCCC
Confidence 99999999999743 35899999999999999999 89999966 455565422 245677889999999997 6788
Q ss_pred cCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEE
Q 037063 263 IHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLI 341 (588)
Q Consensus 263 i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv 341 (588)
+|+++|+++|++ .++++|++++++|+||.+.|+++| ++|+++|+++|+|+++..+ ..++++..+++|+++
T Consensus 125 ~d~~~l~~~i~~-------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~--~~~~~~~~~~~d~~~ 195 (411)
T 3nnk_A 125 FTPDQVEDAVKR-------IRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLG--GNPLETDVWGLDAVS 195 (411)
T ss_dssp CCHHHHHHHHHH-------HCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBT--TBCCCTTTTTCSEEE
T ss_pred CCHHHHHHHHhh-------CCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccC--CcccchhccCCcEEE
Confidence 899999999982 279999999999999999999999 9999999999999998776 334455555699999
Q ss_pred eccCcc-CCCCCCceEEEEEeCcchhcccCC------CCCC---CceEeeecCCCcccccccc------cccccccCCCC
Q 037063 342 CSFYKI-FGENPSGFGCLFVKKSSASVLSGS------TSSV---STIMGIEPSFSEIIELETL------DESSQSKFPES 405 (588)
Q Consensus 342 ~S~~K~-~G~~P~G~G~L~v~~~~~~~l~~~------~~g~---~g~v~~~~~~~~~~~~~~~------~~~~f~e~GT~ 405 (588)
+|+||+ +| |.|+|++++++++++.+.+. +.|+ .|....... ..++.. ...++ +.||+
T Consensus 196 ~s~~K~l~~--~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~ 268 (411)
T 3nnk_A 196 AGMQKCLGG--PSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYS----NYFDLGMVMDYWGPERL-NHHTE 268 (411)
T ss_dssp CCSTTTTCC--CSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSC----STTCHHHHHHHHSTTCC-CCSCC
T ss_pred ecCccccCC--CCceEEEEECHHHHHHHhhcccccccccccccccccCCCCcc----cccchHHHHhhhccccC-CCCCC
Confidence 999995 56 78999999999988766543 2221 011000000 000000 01134 66788
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCC
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNG 485 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g 485 (588)
+...+ +++..+++.+.+.|++++.++.+.+++++.+.|.++ +++++.+.. ...+.++.|.+++ +
T Consensus 269 ~~~~~---~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~~-~~~~~~~~~~~~~--~ 332 (411)
T 3nnk_A 269 ATTAL---FGARECARLILQEGLDYGIARHKLHGDALVKGIQAM----------GLETFGDLK-HKMNNVLGVVIPQ--G 332 (411)
T ss_dssp CHHHH---HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----------TCCBCSCGG-GBCSSEEEEECCT--T
T ss_pred CHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc----------CCEeCCCcc-cccccEEEEECCC--C
Confidence 87775 677789998888899999999999999999999985 344554432 1245788888753 1
Q ss_pred CCcCHHHHHHHH-HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec-CCCCCHHHHHHHHHHHH
Q 037063 486 TRIDPALVQKLA-DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL-GCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 486 ~~i~~~~v~~~l-~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl-g~~~t~eDv~~li~~l~ 563 (588)
++...+.+.| +++||.++.|... .+..+||+|+ ++.++.|||+++++.|+
T Consensus 333 --~~~~~l~~~l~~~~gi~v~~g~~~--------------------------~~~~~iRi~~~~~~~~~~~i~~~~~~l~ 384 (411)
T 3nnk_A 333 --INGDQARKLMLEDFGIEIGTSFGP--------------------------LHGKVWRIGTMGYNARKDCVMTTLSALE 384 (411)
T ss_dssp --CCHHHHHHHHHHHHSEEEEECCGG--------------------------GTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHhcCeEEeCccCC--------------------------CCCCEEEEeCccCcCCHHHHHHHHHHHH
Confidence 4567776655 5559999877311 1112899998 77889999999999999
Q ss_pred Hhhhhh
Q 037063 564 RFLDAD 569 (588)
Q Consensus 564 ~~l~~~ 569 (588)
+++++.
T Consensus 385 ~~l~~~ 390 (411)
T 3nnk_A 385 AVLNYL 390 (411)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 998764
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=268.93 Aligned_cols=352 Identities=10% Similarity=0.045 Sum_probs=254.1
Q ss_pred eeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHH
Q 037063 112 YVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDF 191 (588)
Q Consensus 112 ~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~ 191 (588)
.+|+-+.+..++|+.+++++.+.+.. | .. ....+.+++++++++++
T Consensus 19 ~~~~~~pgp~~~~~~v~~a~~~~~~~------~----------------------~~------~~~~~~~~~~~~~la~~ 64 (376)
T 3f0h_A 19 GMLNFTVGPVMSSEEVRAIGAEQVPY------F----------------------RT------TEFSSTMLENEKFMLEY 64 (376)
T ss_dssp SCEECSSSSCCCCHHHHHHHTSCCCC------C----------------------SS------HHHHHHHHHHHHHHHHH
T ss_pred CceeecCCCCCCcHHHHHHhcCCCCC------C----------------------CC------HHHHHHHHHHHHHHHHH
Confidence 45666778888999999987543310 0 00 01146788999999999
Q ss_pred hCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHH
Q 037063 192 MNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMK 270 (588)
Q Consensus 192 lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~ 270 (588)
+|++++...+++|+|+|+|+.+++.++ +++||+|++. ..+++ ..+ ...++..|++++.++.+ .++.+|+++|++
T Consensus 65 ~g~~~~~~~i~~~~ggt~al~~~~~~~-~~~gd~vi~~~~~~~~--~~~-~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~ 139 (376)
T 3f0h_A 65 AKAPEGSKAVFMTCSSTGSMEAVVMNC-FTKKDKVLVIDGGSFG--HRF-VQLCEIHEIPYVALKLE-HGKKLTKEKLYE 139 (376)
T ss_dssp HTCCTTCEEEEESSCHHHHHHHHHHHH-CCTTCCEEEEESSHHH--HHH-HHHHHHTTCCEEEEECC-TTCCCCHHHHHT
T ss_pred hCCCCCceEEEEcCChhHHHHHHHHhc-cCCCCeEEEEeCChhh--HHH-HHHHHHcCCceEEEeCC-CCCCCCHHHHHH
Confidence 999754333455899999999999999 8999997654 34553 222 35667789999999987 567899999998
Q ss_pred HHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCC
Q 037063 271 KIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFG 349 (588)
Q Consensus 271 ~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G 349 (588)
+++ +++++|++++++|+||.++|+++| ++|+++|+++|+|+++..+ ..++++..+++|++++|+||++|
T Consensus 140 ~~~--------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~--~~~~~~~~~~~d~~~~s~~K~l~ 209 (376)
T 3f0h_A 140 YDN--------QNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFL--ADPFNMNECGADVMITGSQKVLA 209 (376)
T ss_dssp TTT--------SCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTT--TSCCCHHHHTCSEEEEETTTTTC
T ss_pred hhc--------cCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCcccc--CccccccccCccEEEecCccccc
Confidence 776 789999999999999999999999 9999999999999998876 23344444458999999999887
Q ss_pred CCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHh-CH
Q 037063 350 ENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL-GL 428 (588)
Q Consensus 350 ~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~-G~ 428 (588)
. |.|+|++++++++++.+.+....+ ..... ..... .+...+|+.......++++.++++.+.+. |+
T Consensus 210 ~-~~G~g~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~-----~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~ 276 (376)
T 3f0h_A 210 C-PPGISVIVLAPRGVERVEKSKVRT-MYFDL------KDALK-----NQERGQTPFTPAVGILLQINERLKEIKKHGGA 276 (376)
T ss_dssp C-CSSCEEEEECHHHHHHHHTCCCCC-STTCH------HHHHH-----HHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHH
T ss_pred C-CCceEEEEECHHHHHHhhcCCCCc-eeecH------HHHHh-----hcccCCCCCCCcHHHHHHHHHHHHHHHHhcCH
Confidence 4 779999999999888776533221 00000 00000 01023344433332236677889988887 58
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhC-CcEeccc
Q 037063 429 ILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRH-NISLSCG 507 (588)
Q Consensus 429 ~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~-gI~v~~G 507 (588)
+++.++.+.+++++.+.|.++ +++++.+. ....++.+...+ ++...+.+.|.++ ||.++.|
T Consensus 277 ~~~~~~~~~~~~~l~~~L~~~----------~~~~~~~~---~~~~~~~~~~~~-----~~~~~l~~~l~~~~gi~v~~g 338 (376)
T 3f0h_A 277 DAEVARIASQAADFRAKIKDL----------PFELVSES---PANGVTSVHPTT-----ANAYDIFLKLKDEYGIWICPN 338 (376)
T ss_dssp HHHHHHHHHHHHHHHHHTTTS----------SEEECCSS---BBTTEEEEEESS-----SCHHHHHHHHHHHSSEECEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHc----------CCccCccc---cCceEEEEeCCC-----CCHHHHHHHHHHhCCEEEecC
Confidence 999999999999999999875 35665542 234555555333 4567776666555 9999877
Q ss_pred cccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 508 FLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 508 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
... .+..+||+|++.++|.||++++++.|++++++.
T Consensus 339 ~~~--------------------------~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~~ 374 (376)
T 3f0h_A 339 GGE--------------------------MKDTIFRVGHIGALTHEDNTTLVNAFKDLQKRN 374 (376)
T ss_dssp CGG--------------------------GTTTCEEEECCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred ccc--------------------------cCCCEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 210 112289999999999999999999999988754
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=272.22 Aligned_cols=361 Identities=14% Similarity=0.075 Sum_probs=261.8
Q ss_pred CeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHH
Q 037063 111 NYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMD 190 (588)
Q Consensus 111 ~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~ 190 (588)
...||++.+....++.+++++.+.+.. .. . ....+..+++++++++
T Consensus 22 ~~~~~~~p~p~~~~~~v~~a~~~~~~~----~~------------------------~------~~~~~~~~~l~~~la~ 67 (393)
T 3kgw_A 22 PTRLLLGPGPSNLAPRVLAAGSLRMIG----HM------------------------Q------KEMLQIMEEIKQGIQY 67 (393)
T ss_dssp CCCEECSSSCCCCCHHHHHHTTCCCCC----TT------------------------S------HHHHHHHHHHHHHHHH
T ss_pred ccceeccCCCCCCCHHHHHHhcccccC----cc------------------------c------HHHHHHHHHHHHHHHH
Confidence 345889899999999999987533210 00 0 0014677899999999
Q ss_pred HhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHH
Q 037063 191 FMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLM 269 (588)
Q Consensus 191 ~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~ 269 (588)
+++.+. ++.|+||+|+|+|+.+++.++ +++||+|++ ...|++. . +...++..|++++.++++ .++.+|.++|+
T Consensus 68 ~~~~~~-~~~v~~~~gg~~al~~~~~~~-~~~gd~vl~~~~~~~~~--~-~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~ 141 (393)
T 3kgw_A 68 VFQTRN-PLTLVVSGSGHCAMETALFNL-LEPGDSFLTGTNGIWGM--R-AAEIADRIGARVHQMIKK-PGEHYTLQEVE 141 (393)
T ss_dssp HHTCCC-SEEEEESCCTTTHHHHHHHHH-CCTTCEEEEEESSHHHH--H-HHHHHHHTTCEEEEEECC-TTCCCCHHHHH
T ss_pred HhCCCC-CcEEEEeCCcHHHHHHHHHhc-CCCCCEEEEEeCCchhH--H-HHHHHHHcCCceEEEeCC-CCCCCCHHHHH
Confidence 999964 345999999999999999999 999999664 4555431 1 245667889999999997 66789999999
Q ss_pred HHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccC
Q 037063 270 KKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIF 348 (588)
Q Consensus 270 ~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~ 348 (588)
++|++ .++++|++++++|+||...|+++| ++|+++|+++|+|+++..+ ...+++..+++|++++|+||++
T Consensus 142 ~~i~~-------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g--~~~~~~~~~~~d~~~~s~sK~~ 212 (393)
T 3kgw_A 142 EGLAQ-------HKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLG--GVPIYMDQQGIDIMYSSSQKVL 212 (393)
T ss_dssp HHHHH-------HCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTT--TSCCCTTTTTCCEEEEESSSTT
T ss_pred HHHhh-------CCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCcccc--CcccchhhcCCCEEEecCcccc
Confidence 99982 279999999999999999999999 9999999999999998865 3344555566999999999965
Q ss_pred CCCCCceEEEEEeCcchhcccCCCCCCCce-EeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhC
Q 037063 349 GENPSGFGCLFVKKSSASVLSGSTSSVSTI-MGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALG 427 (588)
Q Consensus 349 G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~-v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G 427 (588)
+. |.|+|++++++++++.+.+...++... .+... ....+......++ ..+|++.... +++..+++.+.+.+
T Consensus 213 ~~-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~---~a~~~al~~~~~~~ 284 (393)
T 3kgw_A 213 NA-PPGISLISFNDKAKYKVYSRKTKPVSFYTDITY---LAKLWGCEGETRV-IHHTTPVTSL---YCLRESLALIAEQG 284 (393)
T ss_dssp CC-CSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHH---HHHHTTCSSSCCC-CCCCCCHHHH---HHHHHHHHHHHHHC
T ss_pred cC-CCceeEEEECHHHHHHHhccCCCCCceeecHHH---HHHhhhhccccCC-CCCCCCHHHH---HHHHHHHHHHHHhh
Confidence 42 789999999999888776543221000 00000 0000000011133 5677777664 67778899888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhC-CcEecc
Q 037063 428 LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRH-NISLSC 506 (588)
Q Consensus 428 ~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~-gI~v~~ 506 (588)
++++.++.+++++++.+.|.++ +++++.+......+.++.|.+.+ + ++...+.+.|.++ ||.++.
T Consensus 285 ~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~l~~~~gi~v~~ 350 (393)
T 3kgw_A 285 LENCWRRHREATAHLHKHLQEM----------GLKFFVKDPEIRLPTITTVTVPA--G--YNWRDIVSYVLDHFSIEISG 350 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----------TCCBSSSSGGGBCSSEEEEECCT--T--BCHHHHHHHHHHHHCEECBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----------CCeeccCChhhcCCeEEEEeCCC--C--CCHHHHHHHHHHhCCEEEeC
Confidence 9999999999999999999985 24444332211223566677653 1 4567776666554 999998
Q ss_pred ccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec-CCCCCHHHHHHHHHHHHHhhhh
Q 037063 507 GFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL-GCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 507 G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl-g~~~t~eDv~~li~~l~~~l~~ 568 (588)
|..+ .+..+||+++ ++.++.+|++++++.|++++++
T Consensus 351 g~~~--------------------------~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~ 387 (393)
T 3kgw_A 351 GLGP--------------------------TEERVLRIGLLGYNATTENVDRVAEALREALQH 387 (393)
T ss_dssp CCGG--------------------------GTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred Cccc--------------------------CCCCEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence 7533 1122899998 6667999999999999998865
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-32 Score=292.05 Aligned_cols=385 Identities=9% Similarity=0.006 Sum_probs=253.5
Q ss_pred hHHHHHHHHH--hCCCCCCc-hhHHHHHhhhccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCC
Q 037063 76 LQESFANFTK--VFPQYLQT-DQADRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQ 152 (588)
Q Consensus 76 ~~~~~~~f~~--~~p~y~~~-~~~~~iR~~~f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~ 152 (588)
.++...+.+. ..|+.+.+ .++.++|+ +|+.+ ...+||||+++|+.|..|++++.+..... +.++.+..
T Consensus 45 ~~~~~~~~~~~~~lp~~g~~~~~i~~~~~-~~~~~--~~~~yld~aa~~~~~~~v~~a~~~~~~~~-~~~~~~~~----- 115 (456)
T 2z67_A 45 YLKEIEDVFNHRKIPENGIDDEKIKLFLK-FLSMM--DTDKDPKSVRIGEREARTYSKIHEELSSG-FCHGIGRS----- 115 (456)
T ss_dssp HTHHHHHHHHHCSCCSSCCCHHHHHHHHH-HHHTT--BGGGCTTCEECSSCCCCCSCHHHHHHTTT-CTTCBSBT-----
T ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHHHH-HHHhc--cccccccccccccccccccccccCccccc-cCCCccHH-----
Confidence 3333444443 34666543 56888886 69988 67899999999999999888865432111 22221100
Q ss_pred CCCCcccccccccccccccccCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHH-HHHHHHHhCC-CCCCCeEE-Ec
Q 037063 153 LEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSS-AFKLLAESYP-FYSNPRLL-TV 229 (588)
Q Consensus 153 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~-al~lv~~s~~-~~~gd~ll-~~ 229 (588)
..|. ..++ ... .+....++++++|+++++++|++++ ++||+|+|+ ++.+++.++. +.++++|+ +.
T Consensus 116 --~~~~-----~~~~-~~~-~~~~~~~~~~~~~~~la~~~g~~~~---~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~ 183 (456)
T 2z67_A 116 --GNLV-----DPQP-KAS-GASIMYALTNKILESFFKQLGLNVH---AIATPISTGMSISLCLSAARKKYGSNVVIYPY 183 (456)
T ss_dssp --TBTT-----SCCT-TBH-HHHHHHHHHHHHHHHHHHHTTCCCE---EEEESSCHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred --HHHH-----hhCc-ccc-cCcHHHHHHHHHHHHHHHHcCCCCC---EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 0000 0111 000 0001367889999999999999743 999999995 4433444321 12566655 55
Q ss_pred CCCchhHHHHHHHHHHhcCCEEEEEecc--CCCCccCHHHHHHHH-hhhccccCCCcceEEEEeCCCCCCCccCCHHHH-
Q 037063 230 YDHENEAAALMIESSKKRGARVSSAEFA--WPNLRIHSGKLMKKI-VGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM- 305 (588)
Q Consensus 230 ~e~~s~~~~~~~~~a~~~G~~v~~v~~~--~~~~~i~~e~l~~~i-~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I- 305 (588)
.+|++ + .+.++..|++++.++.. .+++.+|+++|+++| +. ....++.+|++..++|+||.+.|+++|
T Consensus 184 ~~h~s--~---~~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~----~~~~~~~~vv~~~~nn~tG~i~~l~~I~ 254 (456)
T 2z67_A 184 ASHKS--P---IKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKE----IELGNRPCVLSTLTFFPPRNSDDIVEIA 254 (456)
T ss_dssp CCCHH--H---HHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHH----HHTTCCEEEEEESSCCTTBCCCCHHHHH
T ss_pred CCcHH--H---HHHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHH----hhCCCeEEEEEeCCCCCCCCcCCHHHHH
Confidence 66664 2 34556789999998872 156789999999999 41 001367888899999999999999999
Q ss_pred HHHHHcCcEEEEeCCC---cCC---CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEe-CcchhcccCCCCCCCce
Q 037063 306 SVAAEKGWHVLLDATA---LGS---KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTI 378 (588)
Q Consensus 306 ~~a~~~g~~vvvDaa~---~~~---~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~ 378 (588)
++|+++|++++||+|. ..+ .+...+ .. ++|++++|+||+++. |.|+|+++++ +++++.+.+.+.|+
T Consensus 255 ~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~--~~-~~D~~~~s~hK~~~~-p~g~G~l~~~~~~~~~~l~~~~~g~--- 327 (456)
T 2z67_A 255 KICENYDIPHIINGAYAIQNNYYLEKLKKAF--KY-RVDAVVSSSDKNLLT-PIGGGLVYSTDAEFIKEISLSYPGR--- 327 (456)
T ss_dssp HHHHHHTCCEEEECTTTTTCHHHHHHHHHHH--TS-CCSEEEEEHHHHHCC-CSSCEEEEESCHHHHHHHHTTSCSC---
T ss_pred HHHHHcCCcEEEECcchHHHHHhhHHHHHhh--CC-CCCEEEEcCCCCcCC-CCCeEEEEEcCHHHHhhcCcCCCCC---
Confidence 9999999999999763 332 111111 11 499999999996553 8999999996 46666676555441
Q ss_pred EeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCC
Q 037063 379 MGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGI 458 (588)
Q Consensus 379 v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~ 458 (588)
..+++ . .++..++..+...|++++.++...+++++.+.|.++.+.
T Consensus 328 ----------------------~~~~~----~---~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~------ 372 (456)
T 2z67_A 328 ----------------------ASATP----V---VNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKK------ 372 (456)
T ss_dssp ----------------------BCSHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred ----------------------CCCCH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------
Confidence 01111 1 345567777766788999999999999999999985110
Q ss_pred CeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcE-ecc--------ccccCcccccchHHHHHHHHhhh
Q 037063 459 PLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNIS-LSC--------GFLQNIFFSGEYEQERVRVLETR 529 (588)
Q Consensus 459 ~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~-v~~--------G~~c~~~~~~~~~~~~~~~l~~~ 529 (588)
+++.++.|. ++++|.+... + . ...+.+.|.++||. ++. |.+|..
T Consensus 373 ~g~~v~~~~------~~v~~~~~~~-~--~-~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~----------------- 425 (456)
T 2z67_A 373 TGGKFLDVE------SPIASCISVN-S--D-PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGT----------------- 425 (456)
T ss_dssp SSCCBCCCC------CSSEEEEECS-S--C-HHHHHHHHHHTTEESCEEECTTCHHHHTCSSC-----------------
T ss_pred cCCEecCCC------CeEEEEEecc-c--H-HHHHHHHHHHcCCCcceEEeecCccccccccc-----------------
Confidence 145555542 6778877321 1 1 45677777777762 222 333310
Q ss_pred cCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 530 SGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 530 ~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
...+.||+|+++++|.|||+++++.|++++
T Consensus 426 -------~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 426 -------YTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp -------CSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred -------cCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 112389999999999999999999998764
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-30 Score=271.42 Aligned_cols=329 Identities=13% Similarity=0.106 Sum_probs=245.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.+.++++|+.+++++|++++. .+++++|+|+|+.+++.++ +++||+|+ ....|+++. + ...++..|++++.+++
T Consensus 43 ~~~~~~l~~~la~~~g~~~~~-~~~~~~s~t~al~~~~~~l-~~~gd~Vl~~~~~~~~~~--~-~~~~~~~g~~~~~v~~ 117 (416)
T 3isl_A 43 TGIMNETMEMLRELFQTKNRW-AYPIDGTSRAGIEAVLASV-IEPEDDVLIPIYGRFGYL--L-TEIAERYGANVHMLEC 117 (416)
T ss_dssp HHHHHHHHHHHHHHTTCCCSE-EEEEESCHHHHHHHHHHHH-CCTTCEEEEEESSHHHHH--H-HHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCc-EEEecCcHHHHHHHHHHHh-cCCCCEEEEecCCcccHH--H-HHHHHhcCCeeEEEec
Confidence 577889999999999997543 3459999999999999999 99999966 456666422 2 5567788999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ .++.+|+++|+++|++ +++++|++++++|+||.+.|+++| ++|+++|+++|+|+++..+ ..++++..+
T Consensus 118 ~-~~~~~d~~~l~~~i~~-------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~--~~~~~~~~~ 187 (416)
T 3isl_A 118 E-WGTVFDPEDIIREIKK-------VKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIG--GCEVKVDEW 187 (416)
T ss_dssp C-TTCCCCHHHHHHHHHH-------HCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTT--TSCCCTTTT
T ss_pred C-CCCCCCHHHHHHHHhh-------CCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCcccc--CCCcchhhc
Confidence 8 6778999999999972 368999999999999999999999 9999999999999998876 334455556
Q ss_pred CCcEEEeccCcc-CCCCCCceEEEEEeCcchhcccCCC---CCCC----------ceEeeecCCCccccc-ccccccccc
Q 037063 336 KPDFLICSFYKI-FGENPSGFGCLFVKKSSASVLSGST---SSVS----------TIMGIEPSFSEIIEL-ETLDESSQS 400 (588)
Q Consensus 336 ~~D~vv~S~~K~-~G~~P~G~G~L~v~~~~~~~l~~~~---~g~~----------g~v~~~~~~~~~~~~-~~~~~~~f~ 400 (588)
++|++++|+||+ +| |.|+|++++++++++.+.+.. .||. |. .......+...+ ......++
T Consensus 188 ~~d~~~~s~~K~l~g--~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~-~~~~~~~~~~~~~~~~~~~~~- 263 (416)
T 3isl_A 188 KIDAAIGGTQKCLSV--PSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNR-PITSNYFDLSQLEDYWSERRL- 263 (416)
T ss_dssp TCSEEECCSSSTTCC--CSSEEEEEECHHHHHHHHTC------------------CC-CCSCSTTCHHHHHHHTSTTCC-
T ss_pred CCCEEEecCccccCC--CCCeEEEEECHHHHHHhhccccccccccccccchhccCCC-CCCccccchHHHHhhhcccCC-
Confidence 699999999995 56 889999999999888776532 1100 00 000000000000 00001144
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEe
Q 037063 401 KFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNV 480 (588)
Q Consensus 401 e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~ 480 (588)
+.||++...+ +++..+++.+...|++++.++.+.+++++.+.|.++ +++++.+.. ...+.++.|.+
T Consensus 264 ~~~~~~~~~~---~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~~-~~~~~~~~~~~ 329 (416)
T 3isl_A 264 NHHTEATTML---YALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM----------GLRLFGDDS-CKMPVVTCVEI 329 (416)
T ss_dssp CSSCCCHHHH---HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----------TCCBCSCGG-GBCTTEEEEEC
T ss_pred CCCCCCHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc----------CCEeccCcc-ccCCcEEEEeC
Confidence 6778887775 677789999888899999999999999999999984 345555432 12357888887
Q ss_pred ecCCCCCcCHHHHHHHHHh-CCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHH-HHHH
Q 037063 481 FDWNGTRIDPALVQKLADR-HNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFED-TYRL 558 (588)
Q Consensus 481 ~~~~g~~i~~~~v~~~l~~-~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eD-v~~l 558 (588)
++. .+...+.+.|.+ .||.++.|... .+...||+|++.+++.+| |+++
T Consensus 330 ~~~----~~~~~l~~~L~~~~gi~v~~g~~~--------------------------~~~~~iRi~~~~~~~~~e~i~~~ 379 (416)
T 3isl_A 330 PGG----IDGESVRDMLLAQFGIEIASSFGP--------------------------LAGKIWRIGTMGYSCRKENVLFV 379 (416)
T ss_dssp CTT----CCHHHHHHHHHHHHCEECBCCCST--------------------------TTTTEEEEECCGGGCSHHHHHHH
T ss_pred CCC----CCHHHHHHHHHHhCCEEEecCCCC--------------------------CCCCEEEEecccCCCcHHHHHHH
Confidence 531 456777666654 59999877421 122399999987777777 9999
Q ss_pred HHHHHHhhhhh
Q 037063 559 WAFVSRFLDAD 569 (588)
Q Consensus 559 i~~l~~~l~~~ 569 (588)
++.|++++++.
T Consensus 380 ~~~l~~~~~~~ 390 (416)
T 3isl_A 380 LAGLEAVLLRH 390 (416)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999998764
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=263.92 Aligned_cols=353 Identities=12% Similarity=0.124 Sum_probs=252.3
Q ss_pred CeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHH
Q 037063 111 NYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMD 190 (588)
Q Consensus 111 ~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~ 190 (588)
...|+...+...+++.+++++.+.+.. .++| . ..+...++|+.+++
T Consensus 4 ~~~~~~~p~p~~~~~~v~~a~~~~~~~--~~~~------------------------~--------~~~~~~~~~~~l~~ 49 (385)
T 2bkw_A 4 SVDTLLIPGPIILSGAVQKALDVPSLG--HTSP------------------------E--------FVSIFQRVLKNTRA 49 (385)
T ss_dssp CCCEECSSSSCCCCHHHHHTTSCCCCC--TTSH------------------------H--------HHHHHHHHHHHHHH
T ss_pred ccceeecCCCcCchHHHHHHHhccccc--cCCH------------------------H--------HHHHHHHHHHHHHH
Confidence 345777888888888898886433211 1111 0 12356678888888
Q ss_pred HhCCCC--CCceEEEecCHHHHHHHHHHhCC--CCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEec-cCCCCccC
Q 037063 191 FMNISE--DDYTLVFTANQSSAFKLLAESYP--FYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEF-AWPNLRIH 264 (588)
Q Consensus 191 ~lga~~--~e~~vvft~g~T~al~lv~~s~~--~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~-~~~~~~i~ 264 (588)
+++... +.+.|+||+|+|+|+.+++.++. +++||+|++. .+++.... ...++..|++++.+++ + .++.+|
T Consensus 50 ~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~---~~~~~~~g~~~~~v~~~~-~~~~~d 125 (385)
T 2bkw_A 50 VFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRF---ADCLRSYGAQVDVVRPLK-IGESVP 125 (385)
T ss_dssp HTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHH---HHHHHHTTCEEEEECCSS-TTSCCC
T ss_pred HhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHH---HHHHHHcCCceEEEecCC-CCCCCC
Confidence 887631 12359999999999999999883 2899996543 55543232 2455778999999998 6 678899
Q ss_pred HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHc--CcEEEEeCCCcCCCCCCCCCCCCCCCcEEE
Q 037063 265 SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEK--GWHVLLDATALGSKDMDTLGLSLFKPDFLI 341 (588)
Q Consensus 265 ~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~--g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv 341 (588)
+++|+++|+. .++++|++++++|+||.+.|+++| ++|+++ |+++|+|+++..+ ..++++..+++|+++
T Consensus 126 ~~~l~~~l~~-------~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~--~~~~~~~~~~~d~~~ 196 (385)
T 2bkw_A 126 LELITEKLSQ-------NSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIG--CEEFEFDEWGVDFAL 196 (385)
T ss_dssp HHHHHHHHHH-------SCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTT--TSCCCTTTTTCSEEE
T ss_pred HHHHHHHHhc-------CCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccC--CccccccccCceEEE
Confidence 9999999981 278999999999999999999999 999999 9999999998876 233445555699999
Q ss_pred eccCccCCCCCCceEEEEEeCcchh-ccc------CCCCCCCceEeeecCCCcccccccccccccc-----cCCCCCccc
Q 037063 342 CSFYKIFGENPSGFGCLFVKKSSAS-VLS------GSTSSVSTIMGIEPSFSEIIELETLDESSQS-----KFPESSISG 409 (588)
Q Consensus 342 ~S~~K~~G~~P~G~G~L~v~~~~~~-~l~------~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~-----e~GT~~~~~ 409 (588)
+|+||+++. |.|+|+++++++.++ .+. ...+++ ... .+.... ..++ ..||++..+
T Consensus 197 ~s~~K~~~~-~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~----------~~~~~~-~~~~~~~~~~~~~~~~~~ 263 (385)
T 2bkw_A 197 TASQKAIGA-PAGLSISLCSSRFMDYALNDSKNGHVHGYFS-SLR----------RWTPIM-ENYEAGKGAYFATPPVQL 263 (385)
T ss_dssp EESSSTTCC-CSCEEEEEECHHHHHHHTCHHHHCCCSCSTT-CHH----------HHHHHH-HHHHTTCCCCSSCCCHHH
T ss_pred ecCcccccc-CCcceEEEEcHHHHHHHHhhccCCCCCceee-cHH----------HHhhHH-HhhhccCCCCCCCCCHHH
Confidence 999995542 789999999998876 653 112221 100 000000 0120 135666665
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH-HcccCCCCCCCCCeEEEeCCCCCC-CcccEEEEEeecCCCCC
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANAL-MNLHHPHSETGIPLVRIYGPKVMF-DRGPSLAFNVFDWNGTR 487 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L-~~L~h~~~~~g~~~v~i~~p~~~~-~rg~iv~f~~~~~~g~~ 487 (588)
+ +++..+++.+.+.|++++.++.+++++++.+.| +++ +++++.+.... ..+.++.|.+.+
T Consensus 264 ~---~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~----- 325 (385)
T 2bkw_A 264 I---NSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL----------QLTSVSRYPSNMSAHGLTAVYVAD----- 325 (385)
T ss_dssp H---HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT----------CCEESSCSSSTTBCSSCEEEECSC-----
T ss_pred H---HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc----------CceecccCcccccCCceEEEecCC-----
Confidence 4 677788998887789999999999999999999 774 46666543211 246788887753
Q ss_pred cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe-cC---CCCCHHHHHHHHHHHH
Q 037063 488 IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA-LG---CLTNFEDTYRLWAFVS 563 (588)
Q Consensus 488 i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS-lg---~~~t~eDv~~li~~l~ 563 (588)
...+.+.|.++||.++.|..+. .+...+|+| ++ +.++.||++++++.|+
T Consensus 326 --~~~~~~~l~~~gi~v~~g~~~~-------------------------~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~ 378 (385)
T 2bkw_A 326 --PPDVIAFLKSHGVVIAGGIHKD-------------------------IGPKYIRIGHMGVTACNKNLPYMKNCFDLIK 378 (385)
T ss_dssp --HHHHHHHHHHTTEECBCCCCTT-------------------------TGGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred --HHHHHHHHHHCCeEEeCCCCcc-------------------------cCCCEEEEEccccccccCCHHHHHHHHHHHH
Confidence 5567777778999999875431 112389999 76 3579999999999999
Q ss_pred Hhhhh
Q 037063 564 RFLDA 568 (588)
Q Consensus 564 ~~l~~ 568 (588)
+++++
T Consensus 379 ~~~~~ 383 (385)
T 2bkw_A 379 LALQR 383 (385)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 88753
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-29 Score=259.96 Aligned_cols=323 Identities=12% Similarity=0.060 Sum_probs=235.7
Q ss_pred HHHHHHHHHHHHHhCCCCCC-ceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 179 ELESKIRKRIMDFMNISEDD-YTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e-~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
+..+++|+.+++++|. +++ ..|+||+|+|+|+.+++.++ .++||+|+ ....+|...+ ...++..|++++.+++
T Consensus 37 ~~~~~l~~~la~~~g~-~~~~~~v~~~~g~t~a~~~~~~~~-~~~gd~vi~~~~~~~~~~~---~~~~~~~g~~~~~v~~ 111 (366)
T 1m32_A 37 GVVEQIRQQLTALATA-SEGYTSVLLQGSGSYAVEAVLGSA-LGPQDKVLIVSNGAYGARM---VEMAGLMGIAHHAYDC 111 (366)
T ss_dssp TTHHHHHHHHHHHHCS-SSSEEEEEEESCHHHHHHHHHHHS-CCTTCCEEEEESSHHHHHH---HHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHHHhCC-CCcCcEEEEecChHHHHHHHHHHh-cCCCCeEEEEeCCCccHHH---HHHHHHhCCceEEEeC
Confidence 4567999999999994 332 35999999999999999999 78999855 4434432111 3455677999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ .++.+|+++|+++|++ ..++++|++++++|+||.++|+++| ++|+++|+++|+|+++..+ ..++++..+
T Consensus 112 ~-~~~~~d~~~l~~~l~~------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~--~~~~~~~~~ 182 (366)
T 1m32_A 112 G-EVARPDVQAIDAILNA------DPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFG--GIPMDIAAL 182 (366)
T ss_dssp C-TTSCCCHHHHHHHHHH------CTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTT--TSCCCTTTT
T ss_pred C-CCCCCCHHHHHHHHhc------CCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCcccc--CcCcccccc
Confidence 7 6778999999999982 1258899999999999999999999 9999999999999998876 233455555
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHH
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLV 415 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~a 415 (588)
++|++++|+||+++. |.|+|++++++++++.+.+...+. ..+... ....+... . .. ..+|++...+ ++
T Consensus 183 ~~di~~~s~~K~~~~-~~g~G~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~-~-~~-~~~~~~~~~~---~a 250 (366)
T 1m32_A 183 HIDYLISSANKCIQG-VPGFAFVIAREQKLAACKGHSRSL--SLDLYA---QWRCMEDN-H-GK-WRFTSPTHTV---LA 250 (366)
T ss_dssp TCSEEEEESSSTTCC-CSSEEEEEEEHHHHTTCTTCCSCS--TTCHHH---HHHHHHHT-T-TC-CSSCCCHHHH---HH
T ss_pred CccEEEecCcccccC-CCceEEEEECHHHHHhhcCCCCCc--cccHHH---HHhhhccc-C-CC-CCCCCCHHHH---HH
Confidence 699999999996642 789999999998887765432110 000000 00000000 0 00 1245665554 56
Q ss_pred HHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc-EEEEEeecCCCCCcCHHHH
Q 037063 416 ECKGLDHADALG-LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP-SLAFNVFDWNGTRIDPALV 493 (588)
Q Consensus 416 l~~aL~~l~~~G-~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~-iv~f~~~~~~g~~i~~~~v 493 (588)
+.++++.+.+.| ++++.++.+++++++.+.|.++ +++++.+.. .+++ ++.|.+.+..+ .+...+
T Consensus 251 ~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~----------~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~ 316 (366)
T 1m32_A 251 FAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL----------GFNTLLDDE--LHSPIITAFYSPEDPQ--YRFSEF 316 (366)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT----------TCCBSSCGG--GBCSSEEEEECCCCTT--CCHHHH
T ss_pred HHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC----------CCeeccCch--hcCceEEEEEcCccCC--CCHHHH
Confidence 778999888877 8999999999999999999985 244444421 2344 77787753101 457778
Q ss_pred HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 494 QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 494 ~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.+.|.++||.++.|..|. . ..||++++.+++.+||+++++.|++++++
T Consensus 317 ~~~l~~~gi~v~~~~~~~-------------------------~--~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 317 YRRLKEQGFVIYPGKVSQ-------------------------S--DCFRIGNIGEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp HHHHHHTTEECEECCCSS-------------------------S--CEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHCCEEEECCcCCC-------------------------C--CEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 888888899999886541 1 28999999999999999999999988753
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-29 Score=259.75 Aligned_cols=351 Identities=12% Similarity=0.047 Sum_probs=247.8
Q ss_pred CCeeeecC-CCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHH-
Q 037063 110 NNYVCFDY-IGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKR- 187 (588)
Q Consensus 110 ~~~vyLD~-a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~- 187 (588)
++.+|||+ ++.++.++.+++++.+.+.... .+.. ++.+ ...++ ..+...++|+.
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~-~~~~--------------------~~~~-~~~~~--~~~~~~~l~~~~ 62 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYS-VCDF--------------------CTTG-RLDEI--KTPPIHDFIHNQ 62 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------------------------------CCHHHHHHTH
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcc-cCCc--------------------cccc-cchhh--HHHHHHHHHHHH
Confidence 57899999 6688999999999866553210 0000 0000 00000 13446789999
Q ss_pred HHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEe--ccCCCCccC
Q 037063 188 IMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAE--FAWPNLRIH 264 (588)
Q Consensus 188 ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~--~~~~~~~i~ 264 (588)
+++++|++ .|+||+|+|+|+.+++.++ +++||+|++ ...|++ .. ..++..|++++.++ .+ +++.+|
T Consensus 63 la~~~~~~----~v~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~-~~----~~~~~~g~~~~~v~~~~~-~~~~~d 131 (371)
T 2e7j_A 63 LPKFLGCD----VARVTNGAREAKFAVMHSL-AKKDAWVVMDENCHYS-SY----VAAERAGLNIALVPKTDY-PDYAIT 131 (371)
T ss_dssp HHHHTTSS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTCCHH-HH----HHHHHTTCEEEEECCCCT-TTCCCC
T ss_pred HHHHcCCC----EEEEeCChHHHHHHHHHHH-hCCCCEEEEccCcchH-HH----HHHHHcCCeEEEeecccC-CCCCcC
Confidence 99999985 5999999999999999999 899999764 555654 22 23567899999999 76 567899
Q ss_pred HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEec
Q 037063 265 SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICS 343 (588)
Q Consensus 265 ~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S 343 (588)
+++|++++++. ...+++++|++++++|+||..+|+++| ++|+++|+++|+|+++..+. .++++..+.+|++++|
T Consensus 132 ~~~l~~~l~~~---~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~di~~~s 206 (371)
T 2e7j_A 132 PENFAQTIEET---KKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR--MPVSLKEIGADFIVGS 206 (371)
T ss_dssp HHHHHHHHHHH---TTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTT--BCCCHHHHTCSEEEEE
T ss_pred HHHHHHHHHhh---cccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCC--CCCChhhcCCCEEEec
Confidence 99999999721 111478999999999999999999999 99999999999999988762 2233333458999999
Q ss_pred cCccCCCCCCceEEEEEeCcchhc-ccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHH
Q 037063 344 FYKIFGENPSGFGCLFVKKSSASV-LSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDH 422 (588)
Q Consensus 344 ~~K~~G~~P~G~G~L~v~~~~~~~-l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~ 422 (588)
+||+++. |.|+|++++++++++. +.+...++ ... . .| +.|+++..+. +++..++++
T Consensus 207 ~sK~~~~-~~~~G~~~~~~~~~~~~~~~~~~~~--~~~----------~------~~-~~~~~~~~~~---~a~~~~l~~ 263 (371)
T 2e7j_A 207 GHKSMAA-SGPIGVMGMKEEWAEIVLRRSEKYK--NKE----------V------EL-LGCTARGATI---ITLMASFPH 263 (371)
T ss_dssp HHHHSSC-CSSCEEEEECTTTTTTTTCBCSSCT--TSB----------G------GG-TTCCCCSHHH---HHHHHHHHH
T ss_pred CCcCCCC-CCCcEEEEEechhhhhhccccccCc--ccc----------c------cc-ccCCcCHHHH---HHHHHHHHH
Confidence 9996664 6799999999998777 66544321 100 0 12 4667777664 566677877
Q ss_pred HHHhCHHHHHHHH--HHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhC
Q 037063 423 ADALGLILISNRA--RYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRH 500 (588)
Q Consensus 423 l~~~G~~~i~~r~--~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~ 500 (588)
+.. .+.++. +++++++.+.|.++ +++++.+.. .+++++.+.+. +...+.+.|.++
T Consensus 264 ~~~----~~~~~~~~~~~~~~l~~~L~~~----------~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~l~~~ 320 (371)
T 2e7j_A 264 VRE----RIKRWDEEVEKARRFAAEMEKL----------GIKQLGDNP--HNHDLMFFHAE-------VLYEISKKAKGG 320 (371)
T ss_dssp HHH----HGGGHHHHHHHHHHHHHHHHHT----------TCEEESSSS--CCSSEEEEECH-------HHHHHHHHSSSG
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHc----------CcEEecCCC--ccCceEEEECC-------CHHHHHHHHHHC
Confidence 654 667788 88999999999884 456666532 24678777764 255666777788
Q ss_pred CcEeccccccCcccccchHHHHHHHHh-hhcCCCCCcCCccEEE-EecCCC-CCHHHHHHHHHHHHHhhhh
Q 037063 501 NISLSCGFLQNIFFSGEYEQERVRVLE-TRSGTNETRSGVSVVT-AALGCL-TNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 501 gI~v~~G~~c~~~~~~~~~~~~~~~l~-~~~~~~~~~~g~~~vR-vSlg~~-~t~eDv~~li~~l~~~l~~ 568 (588)
||.++. ... ... .+ .....|| ++++.+ ++.+|++++++.|++++++
T Consensus 321 gi~~~~-~~~--------------~~~~~g-------~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 321 RFFLYR-ELK--------------SRKIHG-------IKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp GGHHHH-HHH--------------HTTEEC-------SCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEe-ccc--------------cccccC-------CCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 998754 110 000 00 0123899 999998 9999999999999998753
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=261.16 Aligned_cols=320 Identities=11% Similarity=0.058 Sum_probs=234.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcC--CEEEEE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRG--ARVSSA 254 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G--~~v~~v 254 (588)
.++++++|+.+++++|++ +.|+||+|+|+|+++++..+ ++||+|+ ...+|++. .+ ...++..| ++++.+
T Consensus 34 ~~~~~~~~~~l~~~~~~~---~~v~~~~sgt~a~~~~~~~~--~~gd~vi~~~~~~~~~--~~-~~~~~~~g~~~~~~~~ 105 (379)
T 3ke3_A 34 QEVMNDLLSNLKTVYNAE---AAVIIPGSGTYGMEAVARQL--TIDEDCLIIRNGWFSY--RW-TQILEKGKFAKSSTVL 105 (379)
T ss_dssp HHHHHHHHHHHHHHHTCS---EEEEEESCHHHHHHHHHHHH--CTTCEEEEEECSHHHH--HH-HHHHHHHCCSSEEEEE
T ss_pred HHHHHHHHHHHHHHhCCC---CEEEEcCChhHHHHHHHHhC--CCCCeEEEEeCCchhH--HH-HHHHHHhCCCCceEEE
Confidence 688999999999999996 35999999999999988664 6899965 56667653 33 34555556 488888
Q ss_pred eccCC--------CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCc
Q 037063 255 EFAWP--------NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATAL 322 (588)
Q Consensus 255 ~~~~~--------~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~ 322 (588)
+.++. .+.+|+++++++|.. +++++|++++++|++|.++| +++| ++|+++|+++++|+++.
T Consensus 106 ~~~~~g~~~~~~~~~~~d~~~l~~~i~~-------~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~ 178 (379)
T 3ke3_A 106 TAERTEDTEAPKPFAPVDIETAVAKIKE-------DKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS 178 (379)
T ss_dssp ECEESSCCSSCCCEECCCHHHHHHHHHH-------HTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred eccccccccccCCCCCCCHHHHHHHHhh-------cCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 87521 135899999999962 36899999999999999999 9999 99999999999999988
Q ss_pred CCCCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccc--
Q 037063 323 GSKDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS-- 400 (588)
Q Consensus 323 ~~~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~-- 400 (588)
+ ..++++..+++|++++|+||++|. |.|+|++++++++++.+.+....+ ...+ ...+.... ..++
T Consensus 179 -g--~~~~~~~~~~~d~~~~s~~K~l~~-~~g~g~~~~~~~~~~~l~~~~~~~-~~~~-------~~~~~~~~-~~~~~g 245 (379)
T 3ke3_A 179 -G--CVWLDMKELGIDVLISAPQKGWSS-TPCAGLVMLSAAAIKKVESTESNC-FSLD-------LKQWLTIM-RAYENG 245 (379)
T ss_dssp -T--TCCCCHHHHTCSEEEECTTTTTCS-CCCEEEEEECHHHHHHHHTCCCSC-STTC-------HHHHHHHH-HHHHTT
T ss_pred -C--CccccccccCCCEEEecchhhcCC-CCceEEEEECHHHHHhhhcCCCCc-eeec-------HHHHHHHH-Hhhhcc
Confidence 6 344555555699999999997764 889999999999988776532110 0000 00000000 0110
Q ss_pred ---cCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE
Q 037063 401 ---KFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA 477 (588)
Q Consensus 401 ---e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~ 477 (588)
..+|++...+ +++.++|+.+.+.|++++.+|.+.+++++++.|.++ +++++.+.. .+++++.
T Consensus 246 ~~~~~~t~~~~~~---~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~----------g~~~~~~~~--~~~~~i~ 310 (379)
T 3ke3_A 246 GHAYHATMPTDSL---RQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK----------GIESVAAEG--FEAPGVV 310 (379)
T ss_dssp SCCCSSCCCHHHH---HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----------TCCBSBCTT--CBCSSEE
T ss_pred CCCCCCCCCHHHH---HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc----------CCEecCCcc--ccCceEE
Confidence 1347777765 788899999998899999999999999999999986 244555432 3555443
Q ss_pred -EEeecCCCCCcCHHH-HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHH
Q 037063 478 -FNVFDWNGTRIDPAL-VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDT 555 (588)
Q Consensus 478 -f~~~~~~g~~i~~~~-v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv 555 (588)
+...+ .+. ..+.|.++||.+++|..|..+. ..+...||+|++.++|.+||
T Consensus 311 ~~~~~~-------~~~~~~~~L~~~Gi~v~~g~~~~~~~---------------------~~~~~~lRis~~~~~t~~di 362 (379)
T 3ke3_A 311 VSYTER-------DDMHKGSAFAEAGLQIAAGVPLKVGE---------------------PDNFKTFRLGLFGLDKLTDI 362 (379)
T ss_dssp EEECSC-------HHHHSSHHHHHTTCCCEECCCCSSCC---------------------CTTCCEEEEECCSHHHHTCH
T ss_pred EEccCC-------cchHHHHHHHHCCeEEeCCccccccc---------------------cCcCCEEEEeCCcCCCHHHH
Confidence 44322 222 2567788899999887653110 01123899999999999999
Q ss_pred HHHHHHHHHhhhh
Q 037063 556 YRLWAFVSRFLDA 568 (588)
Q Consensus 556 ~~li~~l~~~l~~ 568 (588)
+++++.|++++++
T Consensus 363 ~~~~~~l~~~l~~ 375 (379)
T 3ke3_A 363 DGTVERFEKALDE 375 (379)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=256.21 Aligned_cols=349 Identities=13% Similarity=0.121 Sum_probs=244.8
Q ss_pred eeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHH
Q 037063 112 YVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDF 191 (588)
Q Consensus 112 ~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~ 191 (588)
.+|+++.|..++|+.+++++.+.+.. +.|+++. .|. .. + +.....+.++++|+.++++
T Consensus 3 ~~~~~~~g~~~~p~~v~~a~~~~~~~--~~~~~~~----------~~~-------~~-~--~~~~~~~~~~~l~~~la~~ 60 (360)
T 1w23_A 3 QVFNFNAGPSALPKPALERAQKELLN--FNDTQMS----------VME-------LS-H--RSQSYEEVHEQAQNLLREL 60 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSS--STTSSSC----------GGG-------SC-T--TSHHHHHHHHHHHHHHHHH
T ss_pred ceEeecCCCcCCCHHHHHHHHHHhhh--hcccccc----------ccc-------cC-C--CCHHHHHHHHHHHHHHHHH
Confidence 57999999999999999998776632 2343210 000 00 0 0011256788999999999
Q ss_pred hCCCCCCceEEEecCH-HHHHHHHHHhCCCCC---CCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHH
Q 037063 192 MNISEDDYTLVFTANQ-SSAFKLLAESYPFYS---NPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGK 267 (588)
Q Consensus 192 lga~~~e~~vvft~g~-T~al~lv~~s~~~~~---gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~ 267 (588)
+|++ +.++|+||+|+ |+|+.+++.++ ..+ |+.|++.... +.. ...++..| +++.++++.+++.+|+++
T Consensus 61 ~g~~-~~~~v~~~~g~gt~al~~~~~~l-~~~~~~g~~vi~~~~~----~~~-~~~~~~~g-~~~~v~~~~~~~~~d~~~ 132 (360)
T 1w23_A 61 LQIP-NDYQILFLQGGASLQFTMLPMNL-LTKGTIGNYVLTGSWS----EKA-LKEAKLLG-ETHIAASTKANSYQSIPD 132 (360)
T ss_dssp HTCC-TTEEEEEESSHHHHHHHHHHHHH-CCTTCEEEEEECSHHH----HHH-HHHHHTTS-EEEEEEECGGGTSCSCCC
T ss_pred hCCC-CCceEEEECCcchHHHHHHHHHh-cCCCCcccEEEecchh----HHH-HHHHHHhC-CeEEeecccccCcCCccc
Confidence 9996 33469999999 99999999888 554 4444433211 111 23456779 999999873356688888
Q ss_pred HHH-HHhhhccccCCCcceEEEEeCCCCCCCccCCHHHHHHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCc
Q 037063 268 LMK-KIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYK 346 (588)
Q Consensus 268 l~~-~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K 346 (588)
|++ +++ +++++|++++++|+||.++| +| ++++|++||+|+++..+ ..++++.. .|++++|+||
T Consensus 133 l~~~~i~--------~~~k~v~~~~~~nptG~~~~--~i--~~~~~~~li~D~a~~~~--~~~~~~~~--~di~~~s~sK 196 (360)
T 1w23_A 133 FSEFQLN--------ENDAYLHITSNNTIYGTQYQ--NF--PEINHAPLIADMSSDIL--SRPLKVNQ--FGMIYAGAQK 196 (360)
T ss_dssp GGGCCCC--------TTEEEEEEESEETTTTEECS--SC--CCCCSSCEEEECTTTTT--SSCCCGGG--CSEEEEETTT
T ss_pred hHhhccC--------CCCCEEEEeCCCCCcceecc--cc--cccCCceEEEechhhcC--CCCcCccc--CCEEEEEccc
Confidence 887 776 78999999999999999998 55 22899999999998876 23344444 3899999999
Q ss_pred cCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHh
Q 037063 347 IFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL 426 (588)
Q Consensus 347 ~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~ 426 (588)
++| |.|+|+++++++.++.+.+.. + +..... .... ..+ ..||++..++ +++..+++++.+.
T Consensus 197 ~~~--~~G~G~~~~~~~~~~~~~~~~-~--~~~~~~-------~~~~---~~~-~~~~~~~~~~---~~~~~al~~~~~~ 257 (360)
T 1w23_A 197 NLG--PSGVTVVIVKKDLLNTKVEQV-P--TMLQYA-------THIK---SDS-LYNTPPTFSI---YMLRNVLDWIKDL 257 (360)
T ss_dssp TTS--CTTCEEEEEEHHHHCSCCTTC-C--GGGCHH-------HHHH---TTT-CSSCCCHHHH---HHHHHHHHHHHHT
T ss_pred ccC--CCCcEEEEEcHHHHhhcccCC-c--chhhhh-------hhhh---ccC-CCCCCCHHHH---HHHHHHHHHHHHh
Confidence 999 779999999998887776543 2 110000 0000 022 4567777664 6777889888776
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCCCCccc-EEEEEeecCCCCCcCHHHHHHHHHhCCcE
Q 037063 427 -GLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVMFDRGP-SLAFNVFDWNGTRIDPALVQKLADRHNIS 503 (588)
Q Consensus 427 -G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~~~rg~-iv~f~~~~~~g~~i~~~~v~~~l~~~gI~ 503 (588)
+++++.++.+.+++++.+.|.++ +++ .++.+. ..+++ ++.|.+.+. .+...+.+.|.++||.
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~ 322 (360)
T 1w23_A 258 GGAEAIAKQNEEKAKIIYDTIDES---------NGFYVGHAEK--GSRSLMNVTFNLRNE----ELNQQFLAKAKEQGFV 322 (360)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTT---------TTSSEESSCG--GGBCSSEEEEECSSH----HHHHHHHHHHHHTTEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHc---------cCcccccCCc--hhccCcEEEEEcCCC----ccHHHHHHHHHHCCee
Confidence 58999999999999999999985 322 333211 12344 888877531 2244566667789999
Q ss_pred eccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 504 LSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 504 v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
++.|... .+ .||+|++.+++.||++++++.|++++++
T Consensus 323 ~~~~~~~--------------------------~~--~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 323 GLNGHRS--------------------------VG--GCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp SCBCCTT--------------------------TC--SEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred eecCCCC--------------------------CC--eEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 8766311 12 7999999999999999999999988653
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=248.45 Aligned_cols=333 Identities=11% Similarity=-0.032 Sum_probs=242.3
Q ss_pred eeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHH
Q 037063 112 YVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDF 191 (588)
Q Consensus 112 ~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~ 191 (588)
..||.++...+ ++.+++++.+.+.. ..+++ .. +. ...+++++++++++++
T Consensus 32 ~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~~~------------------------~~---~~-~~~~~~~~l~~~la~~ 81 (397)
T 3f9t_A 32 GNIFGSMCSNV-LPITRKIVDIFLET-NLGDP------------------------GL---FK-GTKLLEEKAVALLGSL 81 (397)
T ss_dssp TCBCSCSCCCC-CTHHHHHHHHHTTC-CTTSG------------------------GG---BH-HHHHHHHHHHHHHHHH
T ss_pred CCeEEEecCCC-cHHHHHHHHHHHhh-cCCCc------------------------cc---Ch-hHHHHHHHHHHHHHHH
Confidence 36899886555 45678877655532 12222 00 00 1267888999999999
Q ss_pred hCCCCCCceEEEecCHHHHHHHHHHhCCCC-------------CCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 192 MNISEDDYTLVFTANQSSAFKLLAESYPFY-------------SNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 192 lga~~~e~~vvft~g~T~al~lv~~s~~~~-------------~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
+|+++++ |+||+|+|+|+.+++.++ .. +||+|++ ...|++ . ...++..|++++.++++
T Consensus 82 ~~~~~~~--i~~~~ggt~a~~~~~~~~-~~~~~~~~~~~~~~~~gd~vl~~~~~~~~-~----~~~~~~~g~~~~~v~~~ 153 (397)
T 3f9t_A 82 LNNKDAY--GHIVSGGTEANLMALRCI-KNIWREKRRKGLSKNEHPKIIVPITAHFS-F----EKGREMMDLEYIYAPIK 153 (397)
T ss_dssp TTCTTCE--EEEESCHHHHHHHHHHHH-HHHHHHHHHTTCCCCSSCEEEEETTCCTH-H----HHHHHHHTCEEEEECBC
T ss_pred hCCCCCC--EEEecCcHHHHHHHHHHH-HHHHHhhhhhcccCCCCeEEEECCcchhH-H----HHHHHHcCceeEEEeeC
Confidence 9997654 999999999999999887 44 3888765 445553 2 34455679999999998
Q ss_pred CCCCccCHHHHHHHHhhhccccCCC-cceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC---CCC-----
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKK-KRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS---KDM----- 327 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~-~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~---~d~----- 327 (588)
+++.+|+++|+++|+ + ++++|++++++|+||.+.|+++| ++|+++|+++|+|+++... ..-
T Consensus 154 -~~~~~d~~~l~~~i~--------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~ 224 (397)
T 3f9t_A 154 -EDYTIDEKFVKDAVE--------DYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKK 224 (397)
T ss_dssp -TTSSBCHHHHHHHHH--------HSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCC
T ss_pred -CCCcCCHHHHHHHHh--------hcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhccccccc
Confidence 678899999999998 4 79999999999999999999999 9999999999999997642 100
Q ss_pred ----CCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcch-hcc---cCCCCCCCceEeeecCCCccccccccccccc
Q 037063 328 ----DTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSA-SVL---SGSTSSVSTIMGIEPSFSEIIELETLDESSQ 399 (588)
Q Consensus 328 ----~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~-~~l---~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f 399 (588)
.++++.. ++|++++|+||+++. |.++|+++++++.+ +.+ .+...++ +. ..
T Consensus 225 ~~~~~~~~~~~-~~~~~~~s~~K~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~-------------------~~ 282 (397)
T 3f9t_A 225 KGVNYKFDFSL-GVDSITIDPHKMGHC-PIPSGGILFKDIGYKRYLDVDAPYLTET-RQ-------------------AT 282 (397)
T ss_dssp TTCCCCCSGGG-TCSEEECCTTTTTCC-CSSCEEEEESSGGGGGGTCEECTTSSSS-EE-------------------CS
T ss_pred ccccccccccc-cCCeEEEccccccCC-CCCceEEEEeCHHHHHhhccCCccccCC-Cc-------------------cc
Confidence 1334444 689999999997753 77899999987643 333 2222221 00 00
Q ss_pred ccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEE
Q 037063 400 SKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFN 479 (588)
Q Consensus 400 ~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~ 479 (588)
..||.+.... .++.++++.+...+++++.++.+.+++++.+.|.++ +++++.+ ..++++.|.
T Consensus 283 -~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~----~~~~~~~~~ 344 (397)
T 3f9t_A 283 -ILGTRVGFGG---ACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN----------NFKPVIE----PILNIVAIE 344 (397)
T ss_dssp -SCSSCCSHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------TCCBSSC----CSSSEEEEE
T ss_pred -cccccccchH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC----------CCEEEcC----CCccEEEEE
Confidence 2344443333 455677777777678899999999999999999985 2333333 346777776
Q ss_pred eecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHH
Q 037063 480 VFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLW 559 (588)
Q Consensus 480 ~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li 559 (588)
+.+ ...+.+.|.++||.++.|.. . .+||++++.+++.||+++++
T Consensus 345 ~~~-------~~~~~~~l~~~gi~v~~~~~---------------------------~--~~~Ri~~~~~~~~e~i~~~~ 388 (397)
T 3f9t_A 345 DED-------YKEVCKKLRDRGIYVSVCNC---------------------------V--KALRIVVMPHIKREHIDNFI 388 (397)
T ss_dssp CTT-------HHHHHHHHHHTTCBCEECSS---------------------------S--SEEEEECCTTCCHHHHHHHH
T ss_pred eCC-------HHHHHHHHHhCCeEEeccCC---------------------------C--CEEEEEEcCCCCHHHHHHHH
Confidence 643 56677777788999887621 1 28999999999999999999
Q ss_pred HHHHHhhh
Q 037063 560 AFVSRFLD 567 (588)
Q Consensus 560 ~~l~~~l~ 567 (588)
+.|+++++
T Consensus 389 ~~l~~~l~ 396 (397)
T 3f9t_A 389 EILNSIKR 396 (397)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhhC
Confidence 99998775
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-26 Score=247.72 Aligned_cols=330 Identities=10% Similarity=-0.042 Sum_probs=236.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCC---ceEEEecCHHHHHHHHHHhCCCC--------CC-----CeEEEcCCCchhHHHHHH
Q 037063 178 SELESKIRKRIMDFMNISEDD---YTLVFTANQSSAFKLLAESYPFY--------SN-----PRLLTVYDHENEAAALMI 241 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e---~~vvft~g~T~al~lv~~s~~~~--------~g-----d~ll~~~e~~s~~~~~~~ 241 (588)
.++++++++.+++++|+++++ ..+++|+|+|+|+.+++.++ .. +| ++|+++. .|. ++ .
T Consensus 80 ~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~-~~~~~~~~~~~G~~~~~~~vi~~~-~h~-~~---~ 153 (452)
T 2dgk_A 80 AAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAM-KWRWRKRMEAAGKPTDKPNLVCGP-VQI-CW---H 153 (452)
T ss_dssp HHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHH-HHHHHHHHHHTTCCCSCCEEEESS-CCH-HH---H
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHH-HHHHHHHHHhcCCCCCCcEEEECC-CcH-HH---H
Confidence 678899999999999997542 25999999999999887765 21 44 4666555 443 22 4
Q ss_pred HHHHhcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHc------CcE
Q 037063 242 ESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEK------GWH 314 (588)
Q Consensus 242 ~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~------g~~ 314 (588)
..++..|++++.+++++.++.+|+++|+++|+ ++|++|++++++|+||.+.|+++| ++|+++ |++
T Consensus 154 ~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~--------~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~ 225 (452)
T 2dgk_A 154 KFARYWDVELREIPMRPGQLFMDPKRMIEACD--------ENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDID 225 (452)
T ss_dssp HHHHHTTCEEEECCCBTTBCSCCHHHHHHHCC--------TTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHcCceEEEEecCCCCCeECHHHHHHHHh--------hCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCc
Confidence 55677899999999984378999999999998 679999999999999999999999 999995 999
Q ss_pred EEEeCCCcCCC----C-CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCc-ch-hccc--CCCCCCCceEeeecCC
Q 037063 315 VLLDATALGSK----D-MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKS-SA-SVLS--GSTSSVSTIMGIEPSF 385 (588)
Q Consensus 315 vvvDaa~~~~~----d-~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~-~~-~~l~--~~~~g~~g~v~~~~~~ 385 (588)
++||+++.... . ...+++...++|++++++||+++. |.|+|+++++++ .+ +.+. +.+.++ .+.
T Consensus 226 l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~------ 297 (452)
T 2dgk_A 226 MHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLA-PLGCGWVIWRDEEALPQELVFNVDYLGG-QIG------ 297 (452)
T ss_dssp EEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCC-CSSCEEEEESSGGGSCGGGCEEECCTTC-CEE------
T ss_pred EEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCC-CCCeEEEEEcCHHHHHHHhccCccccCC-CCC------
Confidence 99999976531 0 112344444699999999996643 889999999875 33 3331 222221 110
Q ss_pred CcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeC
Q 037063 386 SEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYG 465 (588)
Q Consensus 386 ~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~ 465 (588)
.+...|+.+.... .++..++..+...|++++.++...+++++.+.|.++ ++++++.
T Consensus 298 ------------~~~~~~~r~~~~~---~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---------~~~~~~~ 353 (452)
T 2dgk_A 298 ------------TFAINFSRPAGQV---IAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKL---------GPYEFIC 353 (452)
T ss_dssp ------------ECCSCCSCBCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------SSEEEEE
T ss_pred ------------CcccCCCChhHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC---------CCeEEec
Confidence 0001334444332 455567777666678999999999999999999984 5688876
Q ss_pred CCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe
Q 037063 466 PKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA 545 (588)
Q Consensus 466 p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS 545 (588)
|..+....++++|.+.+..+..++...+.+.|.+.||.++.. +.+.. ..+..++|+|
T Consensus 354 ~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~--~~~~~---------------------~~~~~~lRis 410 (452)
T 2dgk_A 354 TGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAF--TLGGE---------------------ATDIVVMRIM 410 (452)
T ss_dssp ECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEE--ECSTT---------------------CTTCEEEEEE
T ss_pred CCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeee--eCCcc---------------------cCCeEEEEEE
Confidence 532223568999998653222245577888888889987642 11100 0223489999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhhhcccccc
Q 037063 546 LGCLTNFEDTYRLWAFVSRFLDADFVEKERW 576 (588)
Q Consensus 546 lg~~~t~eDv~~li~~l~~~l~~~~~~~~~~ 576 (588)
++.++|.|||+++++.|++.++..--.++.|
T Consensus 411 ~~~~~t~e~id~li~~l~~~~~~~~~~~~~~ 441 (452)
T 2dgk_A 411 CRRGFEMDFAELLLEDYKASLKYLSDHPKLQ 441 (452)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHCGGGT
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999876543333444
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=246.00 Aligned_cols=344 Identities=13% Similarity=0.089 Sum_probs=239.0
Q ss_pred CeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHH
Q 037063 111 NYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMD 190 (588)
Q Consensus 111 ~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~ 190 (588)
..+|++++|.+++|+.+++++.+. +++ . . ...+ ++....+.++++|+.+++
T Consensus 39 ~~~~~~~~~~~~~~~~v~~a~~~~------~~~-~------------~------~~~~----~~~~~~~~~~~~~~~la~ 89 (398)
T 2fyf_A 39 PRDGRFGSGPSKVRLEQLQTLTTT------AAA-L------------F------GTSH----RQAPVKNLVGRVRSGLAE 89 (398)
T ss_dssp CSSCBCCSSSCCCCHHHHHGGGTT------TTT-T------------T------TSCT----TSHHHHHHHHHHHHHHHH
T ss_pred cCCccccCCCCCCCHHHHHHHhhc------CCC-c------------c------CcCc----CCHHHHHHHHHHHHHHHH
Confidence 457888899999999999987542 111 0 0 0000 001114678899999999
Q ss_pred HhCCCCCCceEEE-ecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhc--CCEEEEEeccCCCCccCHHH
Q 037063 191 FMNISEDDYTLVF-TANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKR--GARVSSAEFAWPNLRIHSGK 267 (588)
Q Consensus 191 ~lga~~~e~~vvf-t~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~--G~~v~~v~~~~~~~~i~~e~ 267 (588)
++|+++ +++|+| |+|+|+|+++++.++ +++| .+++....++ ..+ ...+... |++++.++++ . +.+...
T Consensus 90 ~~g~~~-~~~i~~~t~g~t~al~~~~~~l-~~~g-v~~v~~~~~~--~~~-~~~~~~~~~g~~~~~v~~~-~-g~~~~~- 160 (398)
T 2fyf_A 90 LFSLPD-GYEVILGNGGATAFWDAAAFGL-IDKR-SLHLTYGEFS--AKF-ASAVSKNPFVGEPIIITSD-P-GSAPEP- 160 (398)
T ss_dssp HTTCCT-TCEEEEEETCHHHHHHHHHHHT-CSSC-EEEEECSHHH--HHH-HHHHHHCTTSCCCEEEECC-T-TCCCCC-
T ss_pred HhCCCC-CceEEEeCCchhHHHHHHHHHh-cCCC-eEEEeCCHHH--HHH-HHHHHHhCCCCceEEEecC-C-CCCCCc-
Confidence 999973 245998 999999999999999 7886 2222333332 111 2234555 8899999886 2 322211
Q ss_pred HHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCc
Q 037063 268 LMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYK 346 (588)
Q Consensus 268 l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K 346 (588)
.++ +++++|++++++|+||.++|+++| ++ +|++||+|+++..+ ..++++.. +|++++|+||
T Consensus 161 ---~i~--------~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~--~~~~~~~~--~di~~~s~sK 222 (398)
T 2fyf_A 161 ---QTD--------PSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAG--GLPVDIAE--TDAYYFAPQK 222 (398)
T ss_dssp ---CCC--------TTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTT--TSCCCGGG--CSEEEECTTS
T ss_pred ---ccc--------CCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccC--CcccCccc--CcEEEEecCc
Confidence 133 679999999999999999999999 65 89999999998876 23344432 8999999999
Q ss_pred cCCCCCCceEEEEEeCcchhcccC---------CCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHH
Q 037063 347 IFGENPSGFGCLFVKKSSASVLSG---------STSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVEC 417 (588)
Q Consensus 347 ~~G~~P~G~G~L~v~~~~~~~l~~---------~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~ 417 (588)
++|. |.|+|++++++++++.++. .+..+ +... ..+. . .+ ..+|++..++ +++.
T Consensus 223 ~~~~-~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~--------~~~~-~---~~-~~~t~~~~~~---~a~~ 284 (398)
T 2fyf_A 223 NFAS-DGGLWLAIMSPAALSRIEAIAATGRWVPDFLSL-PIAV--------ENSL-K---NQ-TYNTPAIATL---ALLA 284 (398)
T ss_dssp TTCS-CSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCH-HHHH--------HHHT-T---TC-CSSCCCHHHH---HHHH
T ss_pred ccCC-CCceEEEEECHHHHHHhhcccccCCCCCcEEeh-HHHh--------hhcc-c---CC-CCCCCCHHHH---HHHH
Confidence 9995 4479999999988776632 11110 1000 0000 0 01 3456666654 6777
Q ss_pred HHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc-EEEEEeecCCCCCcCHHHHHH
Q 037063 418 KGLDHADALG-LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP-SLAFNVFDWNGTRIDPALVQK 495 (588)
Q Consensus 418 ~aL~~l~~~G-~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~-iv~f~~~~~~g~~i~~~~v~~ 495 (588)
.+|+.+.+.| ++++.++.+++++++.+.|+++ ++++++.+.. ..+++ ++.|.+++ | ++...+.+
T Consensus 285 ~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~---------~g~~~~~~~~-~~~~~~~~~~~~~~--~--~~~~~l~~ 350 (398)
T 2fyf_A 285 EQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER---------PYTTPFVTDP-GLRSQVVGTIDFVD--D--VDAGTVAK 350 (398)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS---------TTEEESCCSG-GGBCSSEEEEEECT--T--SCHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc---------CCceeccCCh-hhcCCcEEEEECCC--C--CCHHHHHH
Confidence 8999888777 8999999999999999999985 5688875211 12455 88888853 2 56777888
Q ss_pred HHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 496 LADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 496 ~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.|.++||.++.|... .+...||+|++.+++.||++++++.|++++++
T Consensus 351 ~L~~~gI~v~~g~~~--------------------------~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 351 ILRANGIVDTEPYRK--------------------------LGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp HHHHTTCBCCSCCTT--------------------------TCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCcEEecCccc--------------------------CCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 887789999876210 12238999999999999999999999988753
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-26 Score=236.16 Aligned_cols=342 Identities=14% Similarity=0.131 Sum_probs=239.0
Q ss_pred CCCCCCchhHHHHHhhhccCCCCCCeeeecCCCCCC-CCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCccccccccc
Q 037063 87 FPQYLQTDQADRIRAQDYFHLSLNNYVCFDYIGHGL-FSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSV 165 (588)
Q Consensus 87 ~p~y~~~~~~~~iR~~~f~~l~~~~~vyLD~a~~gl-~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~ 165 (588)
.+.|.......++++ +|.. ++.++|+.+-..+ .|+.+++++.+.+.. ....|
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~---~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~---------------------- 65 (363)
T 3ffh_A 13 LSSYKPGKREEEVMA-ELGL---TKITKLSSNENPLGTSKKVAAIQANSSVE-TEIYP---------------------- 65 (363)
T ss_dssp CCC----CHHHHHHH-TTTC---SCCEECSSCSCTTCCCHHHHHHHHTCBSC-CCBC-----------------------
T ss_pred CCCCCCCCCHHHHHH-hcCC---CceEEccCCCCCCCCCHHHHHHHHHHHHH-hhcCC----------------------
Confidence 445554455666665 3542 5788888875553 567788887554321 11111
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHH
Q 037063 166 NLNSWLQYGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESS 244 (588)
Q Consensus 166 ~~~s~~~~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a 244 (588)
.....++|+.+++++|+++++ |+||+|+|+|+.+++.++ +++||+|++ ...|++ . ...+
T Consensus 66 ------------~~~~~~lr~~la~~~~~~~~~--v~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~-~----~~~~ 125 (363)
T 3ffh_A 66 ------------DGWASSLRKEVADFYQLEEEE--LIFTAGVDELIELLTRVL-LDTTTNTVMATPTFVQ-Y----RQNA 125 (363)
T ss_dssp ---------------CHHHHHHHHHHHTCCGGG--EEEESSHHHHHHHHHHHH-CSTTCEEEEEESSCHH-H----HHHH
T ss_pred ------------CcchHHHHHHHHHHhCCChhh--EEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCChHH-H----HHHH
Confidence 122468999999999997665 999999999999999999 899999764 444443 2 3455
Q ss_pred HhcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHc--CcEEEEeCCC
Q 037063 245 KKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEK--GWHVLLDATA 321 (588)
Q Consensus 245 ~~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~--g~~vvvDaa~ 321 (588)
+..|++++.++.+ +++.+|+++|+++++ +++++|++++++|+||..+|+++| ++++.. |+++|+|+++
T Consensus 126 ~~~g~~~~~v~~~-~~~~~d~~~l~~~i~--------~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~ 196 (363)
T 3ffh_A 126 LIEGAEVREIPLL-QDGEHDLEGMLNAID--------EKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAY 196 (363)
T ss_dssp HHHTCEEEEEECC-TTSCCCHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTT
T ss_pred HHcCCEEEEecCC-CCCCcCHHHHHHhcc--------cCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCch
Confidence 6789999999998 478899999999997 689999999999999999999999 888877 9999999997
Q ss_pred cCCC---CCCCCCC-CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccccc
Q 037063 322 LGSK---DMDTLGL-SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDES 397 (588)
Q Consensus 322 ~~~~---d~~~l~l-~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~ 397 (588)
.... ....+.. .....++++.|++|.+|.+..++|++++++++++.+......
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~----------------------- 253 (363)
T 3ffh_A 197 IEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRPP----------------------- 253 (363)
T ss_dssp GGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTCCS-----------------------
T ss_pred HhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhCCC-----------------------
Confidence 7210 0011111 112246888999999983233459999988887766533211
Q ss_pred ccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE
Q 037063 398 SQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA 477 (588)
Q Consensus 398 ~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~ 477 (588)
.+.+.... +++..+|+..+ .++++.++.+.+++++.+.|.++ ++++++.+ .+.++.
T Consensus 254 -----~~~~~~~~---~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~l~~~---------~g~~~~~~-----~~~~~~ 309 (363)
T 3ffh_A 254 -----FNTTSIGQ---KLAIEAIKDQA--FIGECRTSNANGIKQYEAFAKRF---------EKVKLYPA-----NGNFVL 309 (363)
T ss_dssp -----CCCBHHHH---HHHHHHHHCHH--HHHHHHHHHHHHHHHHHHHHHHC---------TTCEECCC-----CSSEEE
T ss_pred -----CCCCHHHH---HHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHhhC---------CCceECCC-----CCeEEE
Confidence 11222221 34445555322 26788899999999999999883 35666532 456776
Q ss_pred EEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHH
Q 037063 478 FNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYR 557 (588)
Q Consensus 478 f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~ 557 (588)
+.+.. +...+.+.|.++||.++.|..+. ..++||+|++ +.+|+++
T Consensus 310 ~~~~~------~~~~~~~~l~~~gi~v~~g~~~~--------------------------~~~~iRis~~---~~~~i~~ 354 (363)
T 3ffh_A 310 IDLGI------EAGTIFSYLEKNGYITRSGAALG--------------------------FPTAVRITIG---KEEDNSA 354 (363)
T ss_dssp EECSS------CHHHHHHHHHHTTEECEETTTTT--------------------------CTTEEEEECC---CHHHHHH
T ss_pred EECCC------CHHHHHHHHHHCCeEEEeCccCC--------------------------CCCeEEEECC---CHHHHHH
Confidence 66653 36777777778999999885431 0129999987 8999999
Q ss_pred HHHHHHHhh
Q 037063 558 LWAFVSRFL 566 (588)
Q Consensus 558 li~~l~~~l 566 (588)
+++.|++++
T Consensus 355 ~~~~l~~~l 363 (363)
T 3ffh_A 355 VIALLEKLL 363 (363)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998764
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-27 Score=252.88 Aligned_cols=316 Identities=16% Similarity=0.087 Sum_probs=220.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++++++++.+++++|+++++ ++++.|+|.++..+..++.+++||+|+ ....|++ ....+..+++..|++++.++.
T Consensus 107 ~~~~~~~~~~la~~~g~~~~~--i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s-~~~~~~~~a~~~G~~v~~v~~ 183 (438)
T 1wyu_A 107 LQATFEYQTMIAELAGLEIAN--ASMYDGATALAEGVLLALRETGRMGVLVSQGVHPE-YRAVLRAYLEAVGAKLLTLPL 183 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSEEC--SCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHH-HHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCccc--eEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHh-HHHHHHHHHHHCCCEEEEEcC
Confidence 578899999999999997654 899999994444443333357899966 5556665 333445677888999999987
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCC-CcCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDAT-ALGSKDMDTLGLSL 334 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa-~~~~~d~~~l~l~~ 334 (588)
+++.+|+++ |+ ++|++|+++++ |+||.+.|+++| ++|+++|+++++|+. +..+. . ... ..
T Consensus 184 --~~~~~d~~~----i~--------~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~-~-~~~-~~ 245 (438)
T 1wyu_A 184 --EGGRTPLPE----VG--------EEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGV-L-KPP-GA 245 (438)
T ss_dssp --BTTBCCCCC----CC--------TTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGT-B-CCH-HH
T ss_pred --cCCccCHHH----hC--------CCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccC-c-CCC-cc
Confidence 346777766 55 67999999998 999999999999 999999999998765 44441 1 111 23
Q ss_pred CCCcEEEeccCc-----cCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccc--cccc-ccccccCCCCC
Q 037063 335 FKPDFLICSFYK-----IFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIEL--ETLD-ESSQSKFPESS 406 (588)
Q Consensus 335 ~~~D~vv~S~~K-----~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~--~~~~-~~~f~e~GT~~ 406 (588)
+++|++++|.|| ++|. | |+|++++++++++.+.....| +.+.. .... ...+ ..+. ..++ +.||++
T Consensus 246 ~g~D~~~~s~kk~~~~~~~~G-p-~~G~l~~~~~~~~~l~~~~~g--~~~~~-~~~~-~~~~~l~~~~~~~r~-~~~t~~ 318 (438)
T 1wyu_A 246 YGADIAVGDGQSLGLPMGFGG-P-HFGFLATKKAFVRQLPGRLVS--ETVDV-EGRR-GFILTLQAREQYIRR-AKAKSN 318 (438)
T ss_dssp HTCSEEEEECTTTTCCCGGGC-S-CCEEEEECGGGGGGCCSCCEE--EEEBT-TSCE-EEEECCGGGSHHHHG-GGSSCC
T ss_pred CCCCEEEECCcccCCCccCCC-C-CeeEEEEcHHHHHhCCCceec--ccccc-CCCc-ceeeeccccccccch-hcccCC
Confidence 448999999777 3442 6 899999999988777654433 11110 0000 0001 0000 0134 678888
Q ss_pred ccchhhHHHHHHH--HHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCC
Q 037063 407 ISGVSSKLVECKG--LDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWN 484 (588)
Q Consensus 407 ~~~~~~~~al~~a--L~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~ 484 (588)
+.....++++.++ +..+...|++++.++...+++++.+.|+++ ++++++.+. ..-.++.|.+.
T Consensus 319 ~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~---------~g~~~~~~~---~~~~~~~~~~~--- 383 (438)
T 1wyu_A 319 ITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV---------PGVRPFTPK---PFFNEFALALP--- 383 (438)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---------TTCEECSCS---SBCSEEEEECS---
T ss_pred ccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC---------CCeEECCCC---CeEEEEEEeCC---
Confidence 8433223455555 666766678999999999999999999984 678887652 12234445432
Q ss_pred CCCcCHHHHHHHHHhCCcEe--ccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHH
Q 037063 485 GTRIDPALVQKLADRHNISL--SCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 485 g~~i~~~~v~~~l~~~gI~v--~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l 562 (588)
.+...+.+.|.++||.+ +.|.+|. .+.||+|++.++|.+||+++++.|
T Consensus 384 ---~~~~~~~~~L~~~gi~v~~~~~~~~~---------------------------~~~lRis~~~~~t~edi~~~~~~l 433 (438)
T 1wyu_A 384 ---KDPEAVRRALAERGFHGATPVPREYG---------------------------ENLALFAATELHEEEDLLALREAL 433 (438)
T ss_dssp ---SCHHHHHHHHHHTTCCCCEECCTTSC---------------------------SSEEEEECCTTCCHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHCCceeccccccccC---------------------------CCeEEEEecccCCHHHHHHHHHHH
Confidence 34677877777889998 5554431 128999999999999999999999
Q ss_pred HHhh
Q 037063 563 SRFL 566 (588)
Q Consensus 563 ~~~l 566 (588)
++++
T Consensus 434 ~~~l 437 (438)
T 1wyu_A 434 KEVL 437 (438)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8864
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-26 Score=247.85 Aligned_cols=386 Identities=12% Similarity=0.050 Sum_probs=249.4
Q ss_pred CCCCCc--hhHHHHHhhhccCC-CCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccc
Q 037063 88 PQYLQT--DQADRIRAQDYFHL-SLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRS 164 (588)
Q Consensus 88 p~y~~~--~~~~~iR~~~f~~l-~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~ 164 (588)
|+-+.. ..++.+++.-.+.. ......||||.++++.+..+++++..... |++. ..|+
T Consensus 74 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~-----n~~~-----~~~~---------- 133 (497)
T 2qma_A 74 DNKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAAL-----NQSM-----DSWD---------- 133 (497)
T ss_dssp SSCCCCHHHHHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHHHHHHHHH-----CCCT-----TCGG----------
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHHHHHHHhh-----cccc-----cchh----------
Confidence 555442 34566776433432 11466899999999999999998755432 2200 0000
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC---C---------CC------CC-e
Q 037063 165 VNLNSWLQYGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP---F---------YS------NP-R 225 (588)
Q Consensus 165 ~~~~s~~~~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~---~---------~~------gd-~ 225 (588)
.+ ....++++++++++++++|+++. ..++||+|+|+|+.+++.+.. + ++ |+ +
T Consensus 134 ---~~-----~~~~~le~~~~~~la~~~g~~~~-~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~ 204 (497)
T 2qma_A 134 ---QA-----SSATYVEQKVVNWLCDKYDLSEK-ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLR 204 (497)
T ss_dssp ---GC-----HHHHHHHHHHHHHHHHHTTCCTT-CEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEE
T ss_pred ---hC-----hHHHHHHHHHHHHHHHHhCCCCC-CCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeE
Confidence 00 01267788889999999999642 469999999999988777621 1 12 45 5
Q ss_pred EEE-cCCCchhHHHHHHHHHHhcCC---EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC
Q 037063 226 LLT-VYDHENEAAALMIESSKKRGA---RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS 301 (588)
Q Consensus 226 ll~-~~e~~s~~~~~~~~~a~~~G~---~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p 301 (588)
|++ ...|++ . ...++..|. +++.+|++ +++.+|+++|+++|++. .....++.+|++++.+|+||.+.|
T Consensus 205 v~~s~~~h~s-~----~~~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~--~~~~~~~~~vv~~~~~~~tG~~~~ 276 (497)
T 2qma_A 205 IVCSKKSHFT-V----QKSASWMGLGEKAVMTVDAN-ADGTMDITKLDEVIAQA--KAEGLIPFAIVGTAGTTDHGAIDD 276 (497)
T ss_dssp EEEETTSCTH-H----HHHHHHTTSCGGGEEEECBC-TTSSBCGGGHHHHHHHH--HHTTCEEEEEEEEBSCTTTCCBCC
T ss_pred EEECCCchHH-H----HHHHHHcCCCcccEEEEecC-CCCcCCHHHHHHHHHHH--HHCCCcceEEEEcCCCCCCCCCCC
Confidence 554 456664 2 233444554 89999998 67899999999999721 011112448999999999999999
Q ss_pred HHHH-HHHHHcCcEEEEeCCCcCCCCCCCCC--CCCC-CCcEEEeccCccCCCCCCceEEEEEeCcc-hhcccCC--CCC
Q 037063 302 YMWM-SVAAEKGWHVLLDATALGSKDMDTLG--LSLF-KPDFLICSFYKIFGENPSGFGCLFVKKSS-ASVLSGS--TSS 374 (588)
Q Consensus 302 l~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~--l~~~-~~D~vv~S~~K~~G~~P~G~G~L~v~~~~-~~~l~~~--~~g 374 (588)
+++| ++|+++|+++|||+++..+.-..++. +... .+|++++|+||+++. |.|+|+++++++. ++.+... +..
T Consensus 277 l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~-p~~~G~l~~~~~~~~~~~~~~~~yl~ 355 (497)
T 2qma_A 277 LDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQ-TISCGALLVNDKSNFKFLLHHADYLN 355 (497)
T ss_dssp HHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCC-CSSCEEEEESCGGGGGGGCC------
T ss_pred HHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCC-CcceEEEEEeCHHHHHHhcCCchhcC
Confidence 9999 99999999999999987652111111 1222 589999999997775 8899999998764 3333211 100
Q ss_pred CCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCC
Q 037063 375 VSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHS 454 (588)
Q Consensus 375 ~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~ 454 (588)
..+.. .+. . .. +.-.++..+.+ .++..+++.+...|++.+.++...+++++.+.|.++
T Consensus 356 ~~~~~--~~~---~--~~------~~~~~~r~~~a----l~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----- 413 (497)
T 2qma_A 356 REHDE--LPN---L--VD------KSIATTKRFDA----LKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTN----- 413 (497)
T ss_dssp ---------------------------CCSCCCTH----HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred Ccccc--CCC---c--cc------cCCCCCCchhH----HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhC-----
Confidence 00000 000 0 00 00012222222 234456666655567889999999999999999984
Q ss_pred CCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcC--HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCC
Q 037063 455 ETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRID--PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGT 532 (588)
Q Consensus 455 ~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~--~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~ 532 (588)
++++++.+ .+++++.|.+.+... ..+ ...+.+.+.+.|+.+..+..
T Consensus 414 ----~~~~~~~~----~~~~~v~f~~~~~~~-~~~~l~~~l~~~l~~~G~~~~~~~~----------------------- 461 (497)
T 2qma_A 414 ----DQFELLAE----PSLSTVLFRATHETA-DLDELNKALRLEALTRGIAVLGETI----------------------- 461 (497)
T ss_dssp ----TTEEECSC----CSSSEEEEEECCSSS-CHHHHHHHHHHHHHHHTSCBCEEEE-----------------------
T ss_pred ----CCeEEEcC----CCceEEEEEEcCCcc-CHHHHHHHHHHHHHhCCCEEEEeeE-----------------------
Confidence 67888765 346899998865211 000 12344555666776643211
Q ss_pred CCCcCCccEEEEec-CCCCCHHHHHHHHHHHHHhhhh
Q 037063 533 NETRSGVSVVTAAL-GCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 533 ~~~~~g~~~vRvSl-g~~~t~eDv~~li~~l~~~l~~ 568 (588)
..|..++|+|+ ++++|.+||+++++.|++++++
T Consensus 462 ---~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 462 ---VDGKTALKFTILNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp ---ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---ECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 02334899998 8999999999999999988654
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-26 Score=248.44 Aligned_cols=363 Identities=11% Similarity=-0.005 Sum_probs=235.1
Q ss_pred CeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHH
Q 037063 111 NYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMD 190 (588)
Q Consensus 111 ~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~ 190 (588)
...||||..+++.|..++..+... +.|+++. .|+ .+. ...+++.++++++++
T Consensus 108 ~p~~~~~~~~~~~~~~~~~~~l~~-----~~n~~~~-----~~~-------------~s~-----~~~~le~~~~~~la~ 159 (515)
T 2jis_A 108 HPRFFNQLFSGLDPHALAGRIITE-----SLNTSQY-----TYE-------------IAP-----VFVLMEEEVLRKLRA 159 (515)
T ss_dssp STTEESSSCCCCCHHHHHHHHHHH-----HHCCCTT-----CTT-------------TCH-----HHHHHHHHHHHHHHH
T ss_pred CCCeEEEeeCCCCHHHHHHHHHHH-----HhccCCC-----chh-------------hch-----HHHHHHHHHHHHHHH
Confidence 457999999999998888755332 2233210 010 011 126788899999999
Q ss_pred HhCCCCCCceEEEecCHHHHHHHHHHhCC------CC-CCC------eEE-EcCCCchhHHHHHHHHHHhcCC---EEEE
Q 037063 191 FMNISEDDYTLVFTANQSSAFKLLAESYP------FY-SNP------RLL-TVYDHENEAAALMIESSKKRGA---RVSS 253 (588)
Q Consensus 191 ~lga~~~e~~vvft~g~T~al~lv~~s~~------~~-~gd------~ll-~~~e~~s~~~~~~~~~a~~~G~---~v~~ 253 (588)
++|++++ .++||+|+|+|+.+++.++. ++ +|+ +|+ +...|++ . ...++..|. +++.
T Consensus 160 l~g~~~~--~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s-~----~~~~~~~g~g~~~v~~ 232 (515)
T 2jis_A 160 LVGWSSG--DGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYS-I----QKGAAFLGLGTDSVRV 232 (515)
T ss_dssp HHTCSSC--EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH-H----HHHHHHTTSCGGGEEE
T ss_pred HhCCCCC--CeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHH-H----HHHHHHcCCCCCcEEE
Confidence 9999743 59999999999877766641 12 464 555 4556665 2 233445566 8999
Q ss_pred EeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCC-CCCC-
Q 037063 254 AEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKD-MDTL- 330 (588)
Q Consensus 254 v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d-~~~l- 330 (588)
+|.+ +++.+|+++|+++|++. +....++++|++++++|+||.+.|+++| ++|+++|+++|||+++..+.- ....
T Consensus 233 v~~~-~~~~~d~~~L~~~i~~~--~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~ 309 (515)
T 2jis_A 233 VKAD-ERGKMVPEDLERQIGMA--EAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHR 309 (515)
T ss_dssp ECBC-TTSCBCHHHHHHHHHHH--HHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG
T ss_pred EecC-CCCcCCHHHHHHHHHHH--HhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhH
Confidence 9997 67899999999999731 1112368999999999999999999999 999999999999999777521 1111
Q ss_pred -CCCC-CCCcEEEeccCccCCCCCCceEEEEEeCc--chhcc----cCCCCCCCceEeeecCCCcccccccccccccccC
Q 037063 331 -GLSL-FKPDFLICSFYKIFGENPSGFGCLFVKKS--SASVL----SGSTSSVSTIMGIEPSFSEIIELETLDESSQSKF 402 (588)
Q Consensus 331 -~l~~-~~~D~vv~S~~K~~G~~P~G~G~L~v~~~--~~~~l----~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~ 402 (588)
.+.. .++|++++|+||++|. |.|+|+++++++ +++.+ .++..++ +... . . .+ +.
T Consensus 310 ~~~~g~~~aD~v~~s~hK~l~~-p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~-~~~~--~----~---------~~-~~ 371 (515)
T 2jis_A 310 HLLDGIQRADSVAWNPHKLLAA-GLQCSALLLQDTSNLLKRCHGSQASYLFQQ-DKFY--D----V---------AL-DT 371 (515)
T ss_dssp GGGTTGGGCSEEEECTTSTTCC-CSCCEEEEESCCSCHHHHHHCC----------CCS--C----G---------GG-CC
T ss_pred hhcCCCccCCEEEECcccccCC-CCCeeEEEEeChHHHHHHHhcCCchhccCC-cccc--c----c---------cC-CC
Confidence 1222 2589999999998875 889999999987 54432 2222221 1100 0 0 01 11
Q ss_pred CCCCccch--hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEe
Q 037063 403 PESSISGV--SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNV 480 (588)
Q Consensus 403 GT~~~~~~--~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~ 480 (588)
|+..+... .....+..++..+...|++++.++...+++++.+.|.++ ++++++++. ..++++|..
T Consensus 372 ~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---------~g~~~~~~~----~~~~v~f~~ 438 (515)
T 2jis_A 372 GDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKR---------EGFELVMEP----EFVNVCFWF 438 (515)
T ss_dssp GGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---------TTEEESSCC----SSSEEEEEE
T ss_pred CCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---------CCEEEeCCC----CeeEEEEEE
Confidence 11111000 000233445666666678999999999999999999984 689998762 356788876
Q ss_pred ecC--CC----CCcCH------HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCC-ccEEEEec-
Q 037063 481 FDW--NG----TRIDP------ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSG-VSVVTAAL- 546 (588)
Q Consensus 481 ~~~--~g----~~i~~------~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g-~~~vRvSl- 546 (588)
... .+ ..+.. ..+.+.+.+.|+....... ..+ ..+||+++
T Consensus 439 ~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~--------------------------~~~~~~~lRis~~ 492 (515)
T 2jis_A 439 VPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQP--------------------------HGTRGNFFRVVVA 492 (515)
T ss_dssp CCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEE--------------------------ETTEEEEEEEECC
T ss_pred eCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEE--------------------------ECCceEEEEEEeC
Confidence 421 11 00000 0133344445653211000 012 13899999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhh
Q 037063 547 GCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 547 g~~~t~eDv~~li~~l~~~l~~ 568 (588)
++++|.+||+++++.|++++++
T Consensus 493 ~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 493 NSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp CTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHhh
Confidence 8999999999999999987653
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-25 Score=243.52 Aligned_cols=317 Identities=13% Similarity=0.016 Sum_probs=232.6
Q ss_pred hHHHHHHHHHHHHHhCCC--CCC-ceEEEecCHHHHHHHHHHhCCCCC--------CC-----eEEEc-CCCchhHHHHH
Q 037063 178 SELESKIRKRIMDFMNIS--EDD-YTLVFTANQSSAFKLLAESYPFYS--------NP-----RLLTV-YDHENEAAALM 240 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~--~~e-~~vvft~g~T~al~lv~~s~~~~~--------gd-----~ll~~-~e~~s~~~~~~ 240 (588)
.++++++++++++++|++ +++ ...++|+|+|+|+.+++.++ ..+ |+ +|+++ ..|.+ +
T Consensus 94 ~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~-~~~~~~~~~~~G~~~~~~~vi~~~~~h~s--~--- 167 (502)
T 3hbx_A 94 TELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAF-KRKWQNKRKAEGKPVDKPNIVTGANVQVC--W--- 167 (502)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHH-HHHHHHHHHHTTCCCSCCEEEEETTCCHH--H---
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHH-HHHHhHHHHhcCCCCCCcEEEEcCCchHH--H---
Confidence 688889999999999997 433 23457999999999888776 222 65 66654 45543 2
Q ss_pred HHHHHhcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHc------Cc
Q 037063 241 IESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEK------GW 313 (588)
Q Consensus 241 ~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~------g~ 313 (588)
...++..|++++.++++..++.+|+++|+++|+ ++|++|++++++|+||.+.|+++| ++|+++ |+
T Consensus 168 ~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~--------~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~ 239 (502)
T 3hbx_A 168 EKFARYFEVELKEVKLSEGYYVMDPQQAVDMVD--------ENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDT 239 (502)
T ss_dssp HHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCC--------TTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHcCceeEEEecCCCcCcCCHHHHHHHHh--------hCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCC
Confidence 456677899999999985458999999999998 689999999999999999999999 999999 99
Q ss_pred EEEEeCCCcCC-----CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcc-hh-cc--cCCCCCCCceEeeecC
Q 037063 314 HVLLDATALGS-----KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSS-AS-VL--SGSTSSVSTIMGIEPS 384 (588)
Q Consensus 314 ~vvvDaa~~~~-----~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~-~~-~l--~~~~~g~~g~v~~~~~ 384 (588)
+++||+|+... ....+.++...++|++++++||+++. |.|+|+++++++. +. .+ .+.+.++ ...
T Consensus 240 ~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~-p~g~G~~~~~~~~~l~~~~~~~~~yl~~-~~~----- 312 (502)
T 3hbx_A 240 PIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLV-YAGIGWVIWRNKEDLPEELIFHINYLGA-DQP----- 312 (502)
T ss_dssp CEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCC-CSSCEEEEESSGGGSCGGGCEEECSSSS-CEE-----
T ss_pred eEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCC-CCCeEEEEEeCHHHhhHHhccCcccccC-CCC-----
Confidence 99999998632 11123344445699999999997753 8999999998643 21 11 1222221 110
Q ss_pred CCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEe
Q 037063 385 FSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIY 464 (588)
Q Consensus 385 ~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~ 464 (588)
.|.-.++.+...+ +++..++..+...|+..+.++...+++++.+.|.++ ++++++
T Consensus 313 -------------~~~~~~sr~~~~~---~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---------~~~~~~ 367 (502)
T 3hbx_A 313 -------------TFTLNFSKGSSQV---IAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKT---------ERFNIV 367 (502)
T ss_dssp -------------ECCSCCSCBSHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------TCEEEC
T ss_pred -------------CccccCCchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCEEEE
Confidence 0101233433332 556677887766678999999999999999999985 568888
Q ss_pred CCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEE
Q 037063 465 GPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTA 544 (588)
Q Consensus 465 ~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRv 544 (588)
.+. ...++++|.+.+.. .++...+.+.|.++||.++.... +. . ..+...+|+
T Consensus 368 ~~~---~~~~~v~f~~~~~~--~~~~~~l~~~L~~~Gi~v~~~~~--p~--------------~-------~~~~~~lRi 419 (502)
T 3hbx_A 368 SKD---EGVPLVAFSLKDSS--CHTEFEISDMLRRYGWIVPAYTM--PP--------------N-------AQHITVLRV 419 (502)
T ss_dssp SCS---SSSSEEEEEESSCS--SCCHHHHHHHHHTTTCBCCEEEC--CT--------------T-------CTTCEEEEE
T ss_pred eCC---CCceEEEEEecCCC--cCCHHHHHHHHHhCCcEEeeccC--Cc--------------c-------cCCceEEEE
Confidence 651 35689999987522 25666788888999998864211 00 0 123348999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 545 ALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 545 Slg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+++..+|.||+++|++.|++.++.
T Consensus 420 sv~~~~t~edid~li~~L~~~l~~ 443 (502)
T 3hbx_A 420 VIREDFSRTLAERLVIDIEKVMRE 443 (502)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988754
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=233.44 Aligned_cols=327 Identities=12% Similarity=0.101 Sum_probs=234.0
Q ss_pred CCeeeecCCCCCC-CCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGL-FSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRI 188 (588)
Q Consensus 110 ~~~vyLD~a~~gl-~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~i 188 (588)
++.+.|+.+...+ .|+.+++++.+.+.. ... |. .....++|+.+
T Consensus 16 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~-------------------------------y~---~~~~~~l~~~l 60 (354)
T 3ly1_A 16 DNPIRINFNENPLGMSPKAQAAARDAVVK-ANR-------------------------------YA---KNEILMLGNKL 60 (354)
T ss_dssp SSCEECSSCCCSSCCCHHHHHHHHHTGGG-TTS-------------------------------CC---HHHHHHHHHHH
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHhh-CcC-------------------------------CC---CCchHHHHHHH
Confidence 5667787765543 677888887655421 111 10 23457999999
Q ss_pred HHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHH
Q 037063 189 MDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGK 267 (588)
Q Consensus 189 a~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~ 267 (588)
++++|+++++ |++|+|+|+|+.+++.++ .++||+|++. ..|++ . ...++..|++++.++.+ +++.+|+++
T Consensus 61 a~~~~~~~~~--i~~~~g~~~a~~~~~~~l-~~~gd~vl~~~~~~~~-~----~~~~~~~g~~~~~~~~~-~~~~~d~~~ 131 (354)
T 3ly1_A 61 AAHHQVEAPS--ILLTAGSSEGIRAAIEAY-ASLEAQLVIPELTYGD-G----EHFAKIAGMKVTKVKML-DNWAFDIEG 131 (354)
T ss_dssp HHHTTSCGGG--EEEESHHHHHHHHHHHHH-CCTTCEEEEESSSCTH-H----HHHHHHTTCEEEEECCC-TTSCCCHHH
T ss_pred HHHhCCChHH--EEEeCChHHHHHHHHHHH-hCCCCeEEECCCCchH-H----HHHHHHcCCEEEEecCC-CCCCCCHHH
Confidence 9999997665 999999999999999998 8999997654 44443 2 34566789999999997 568899999
Q ss_pred HHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH--cCcEEEEeCCCcCCC-CC---CCCC-CCCC-CCc
Q 037063 268 LMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE--KGWHVLLDATALGSK-DM---DTLG-LSLF-KPD 338 (588)
Q Consensus 268 l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~--~g~~vvvDaa~~~~~-d~---~~l~-l~~~-~~D 338 (588)
|++++++ .+++++|++++++|+||..+|++++ ++++. +|+++|+|+++.... +- ..+. +... ..+
T Consensus 132 l~~~l~~------~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (354)
T 3ly1_A 132 LKAAVAA------YSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENI 205 (354)
T ss_dssp HHHHHHT------CSSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSE
T ss_pred HHHHhcc------CCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCE
Confidence 9999971 1479999999999999999999998 88777 999999999976421 00 1111 1112 367
Q ss_pred EEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHH
Q 037063 339 FLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECK 418 (588)
Q Consensus 339 ~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~ 418 (588)
+++.|++|.+|.++.++|++++++++++.+...... ++.+.... +++..
T Consensus 206 i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~---~a~~~ 254 (354)
T 3ly1_A 206 ILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVAG----------------------------EKINFSGV---DAALA 254 (354)
T ss_dssp EEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGTTC----------------------------SCCCHHHH---HHHHH
T ss_pred EEEeeChhhccChhhhheeeecCHHHHHHHHHhcCC----------------------------CCCCHHHH---HHHHH
Confidence 999999999984345689999988877666533211 12222222 34445
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHH
Q 037063 419 GLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLAD 498 (588)
Q Consensus 419 aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~ 498 (588)
+|+... .++++.++.+.+++++.+.|.++ | ++++. ..+.++.+.+.+ +...+.+.|.
T Consensus 255 ~l~~~~--~~~~~~~~~~~~~~~l~~~l~~~-------~---~~~~~-----~~~~~~~~~~~~------~~~~~~~~l~ 311 (354)
T 3ly1_A 255 SMNDSA--FITYSKKSNDVSRQILLKALEDL-------K---LPYLP-----SEGNFVFHQLVV------PLKDYQTHMA 311 (354)
T ss_dssp HTTCHH--HHHHHHHHHHHHHHHHHHHHHHH-------T---CCBCC-----CCSSEEEEECSS------CHHHHHHHHH
T ss_pred HhcCHH--HHHHHHHHHHHHHHHHHHHHHHC-------C---CeECC-----CCceEEEEECCC------CHHHHHHHHH
Confidence 555332 26788889999999999999885 2 33332 245676666653 3677777788
Q ss_pred hCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhhh
Q 037063 499 RHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDADF 570 (588)
Q Consensus 499 ~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~~ 570 (588)
++||.++ |.+|. +.+.||+|++ +.+|++++++.|++++++.+
T Consensus 312 ~~gi~v~-g~~~~--------------------------~~~~iRis~~---~~~~i~~~~~~l~~~l~~~~ 353 (354)
T 3ly1_A 312 DAGVLIG-RAFPP--------------------------ADNWCRISLG---TPQEMQWVADTMREFRKKSW 353 (354)
T ss_dssp HTTEECC-CCCTT--------------------------CTTEEEEECC---CHHHHHHHHHHHHHHHHTTC
T ss_pred HCCEEEe-ecCCC--------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHHhhC
Confidence 8999998 75541 1229999976 89999999999999887643
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-26 Score=237.23 Aligned_cols=343 Identities=11% Similarity=0.076 Sum_probs=242.0
Q ss_pred hCCCCCCchhHHHHHhhhccCCCCCCeeeecCCCCC-CCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccc
Q 037063 86 VFPQYLQTDQADRIRAQDYFHLSLNNYVCFDYIGHG-LFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRS 164 (588)
Q Consensus 86 ~~p~y~~~~~~~~iR~~~f~~l~~~~~vyLD~a~~g-l~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~ 164 (588)
..+.|........+++ .|.. ++.++|+.+-.. +.|+.+++++.+.+.. ..+.|
T Consensus 10 ~~~~~~~~~~~~~~~~-~~~~---~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~--------------------- 63 (365)
T 3get_A 10 NLSNYEPGKDIEVIAK-EYGV---KEVIKLASNENPFGTPPKAIECLRQNANK-AHLYP--------------------- 63 (365)
T ss_dssp GSCCCCCCCCHHHHHH-HTTC---SCCEECSSCCCTTCSCHHHHHHHHHHGGG-TTSCC---------------------
T ss_pred hcCCCCCCCCHHHHHH-hcCC---CceEEecCCCCCCCCCHHHHHHHHHHHHh-hccCC---------------------
Confidence 3455554445666665 3543 578899977554 3677888887665531 11111
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHH
Q 037063 165 VNLNSWLQYGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESS 244 (588)
Q Consensus 165 ~~~~s~~~~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a 244 (588)
. ... .++|+.|++++|+++++ |++|+|+|+|+.+++.++ +++||+|++....+... ...+
T Consensus 64 ---~-------~~~---~~lr~~la~~~~~~~~~--v~~~~g~~~a~~~~~~~l-~~~gd~vl~~~~~~~~~----~~~~ 123 (365)
T 3get_A 64 ---D-------DSM---IELKSTLAQKYKVQNEN--IIIGAGSDQVIEFAIHSK-LNSKNAFLQAGVTFAMY----EIYA 123 (365)
T ss_dssp ---C-------TTC---HHHHHHHHHHHTCCGGG--EEEESSHHHHHHHHHHHH-CCTTCEEEECSSCCTHH----HHHH
T ss_pred ---C-------CCh---HHHHHHHHHHhCCCcce--EEECCCHHHHHHHHHHHH-hCCCCEEEEeCCChHHH----HHHH
Confidence 0 001 48999999999997655 999999999999999999 89999977654433312 3455
Q ss_pred HhcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHH--HcCcEEEEeCCC
Q 037063 245 KKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAA--EKGWHVLLDATA 321 (588)
Q Consensus 245 ~~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~--~~g~~vvvDaa~ 321 (588)
+..|++++.++++..++ +|+++|+++++ +++++|++++++|+||..+|++++ ++++ ++|+++|+|+++
T Consensus 124 ~~~g~~~~~v~~~~~~~-~d~~~l~~~l~--------~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~ 194 (365)
T 3get_A 124 KQCGAKCYKTQSITHNL-DEFKKLYETHK--------DEIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAY 194 (365)
T ss_dssp HHHTCEEEECSSSSCCH-HHHHHHHHHTT--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTT
T ss_pred HHcCCEEEEEecCCCCC-CCHHHHHHHhC--------CCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcc
Confidence 67799999999822567 99999999998 789999999999999999999999 8877 679999999997
Q ss_pred c------CCCC-CCCCCC-CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccc
Q 037063 322 L------GSKD-MDTLGL-SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELET 393 (588)
Q Consensus 322 ~------~~~d-~~~l~l-~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~ 393 (588)
. .+.. ...+.+ .....++++.|++|.+|.++.++|++++++++++.+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~------------------- 255 (365)
T 3get_A 195 NEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAP------------------- 255 (365)
T ss_dssp HHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSCT-------------------
T ss_pred HHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhcCC-------------------
Confidence 6 3200 111110 123367999999999984345689999988877665432211
Q ss_pred ccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc
Q 037063 394 LDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG 473 (588)
Q Consensus 394 ~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg 473 (588)
.+.+.... +++..+|+... .++++.++.+.+++++.+.|.++ +++++.+ .+
T Consensus 256 ---------~~~~~~~~---~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~l~~~----------g~~~~~~-----~~ 306 (365)
T 3get_A 256 ---------FNVSNLAL---KAAVAAMDDDE--FTEKTLENNFSQMELYKEFAKKH----------NIKIIDS-----YT 306 (365)
T ss_dssp ---------TCSCHHHH---HHHHHHHTCHH--HHHHHHHHHHHHHHHHHHHHHHT----------TCEECCC-----SS
T ss_pred ---------CCcCHHHH---HHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHhC----------CCEECCC-----CC
Confidence 01222221 34445555322 36888889999999999999884 3455432 45
Q ss_pred cEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHH
Q 037063 474 PSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFE 553 (588)
Q Consensus 474 ~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~e 553 (588)
.++.+.+.+. +...+.+.|.++||.++.|..|. .+.||+|++ +.+
T Consensus 307 ~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~---------------------------~~~iRis~~---~~~ 351 (365)
T 3get_A 307 NFITYFFDEK-----NSTDLSEKLLKKGIIIRNLKSYG---------------------------LNAIRITIG---TSY 351 (365)
T ss_dssp SEEEEECSSS-----CHHHHHHHHHTTTEECEECGGGT---------------------------CSEEEEECC---CHH
T ss_pred eEEEEECCCC-----CHHHHHHHHHHCCEEEEECccCC---------------------------CCEEEEEcC---CHH
Confidence 6666666541 57778888888899999886541 128999987 899
Q ss_pred HHHHHHHHHHHhh
Q 037063 554 DTYRLWAFVSRFL 566 (588)
Q Consensus 554 Dv~~li~~l~~~l 566 (588)
|++++++.|++++
T Consensus 352 ~i~~l~~~l~~~l 364 (365)
T 3get_A 352 ENEKFFTEFDKIL 364 (365)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999876
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-25 Score=230.03 Aligned_cols=322 Identities=10% Similarity=0.013 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--CCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--FYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
...+++|+.|++++|++ .+++|+|+|+|+.+++.++. +++||+|++ ...|++ .. ..++..|++++.++
T Consensus 32 ~~~~~l~~~la~~~~~~----~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~-~~----~~~~~~g~~~~~~~ 102 (375)
T 2fnu_A 32 KRSLLFEEALCEFLGVK----HALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVA-TA----NMLLESGYTPVFAG 102 (375)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTH-HH----HHHHHTTCEEEECC
T ss_pred hHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHh-HH----HHHHHCCCEEEEec
Confidence 45679999999999985 49999999999999999997 789999765 455654 22 23456899999999
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCC
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSL 334 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~ 334 (588)
++ +++.+|+++|+++++ +++++|+++++ ||...|+++| ++|+++|+++|+|+++..+.......+..
T Consensus 103 ~~-~~~~~d~~~l~~~i~--------~~~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~ 170 (375)
T 2fnu_A 103 IK-NDGNIDELALEKLIN--------ERTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGG 170 (375)
T ss_dssp BC-TTSSBCGGGSGGGCC--------TTEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTS
T ss_pred cC-CCCCCCHHHHHhhcC--------cCceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccc
Confidence 97 556899999988887 67898888776 9999999999 99999999999999988762111100222
Q ss_pred CCCcEEEeccC--ccCCCCCCceEEEEEe--CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc-c
Q 037063 335 FKPDFLICSFY--KIFGENPSGFGCLFVK--KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS-G 409 (588)
Q Consensus 335 ~~~D~vv~S~~--K~~G~~P~G~G~L~v~--~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~-~ 409 (588)
+ .|+++.|++ |++| | |+|+++++ +++++.+.+...+ +.....+ .+| +.++.++. .
T Consensus 171 ~-~~i~~~s~s~~K~~~--~-g~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------------~~~-~~~~~~~~~~ 230 (375)
T 2fnu_A 171 F-ALASVFSFHAIKPIT--T-AEGGAVVTNDSELHEKMKLFRSH--GMLKKDF-------------FEG-EVKSIGHNFR 230 (375)
T ss_dssp S-SSEEEEECCTTSSSC--C-SSCEEEEESCHHHHHHHHHHTBT--TEEESSS-------------SCE-EESSCCCBCC
T ss_pred c-CCeEEEeCCCCCCcc--c-cCceEEEeCCHHHHHHHHHHHhc--CCccccc-------------ccc-ccccccccCC
Confidence 2 256655555 9998 7 89999995 3466666544333 1110000 022 22222211 1
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc-ccEEEEEeecCCCCCc
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR-GPSLAFNVFDWNGTRI 488 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r-g~iv~f~~~~~~g~~i 488 (588)
. ..+..++.+....+++.+.++.+.+++++.+.|.++ ++++++.+...... +.++.+.+... + +
T Consensus 231 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~ 295 (375)
T 2fnu_A 231 L---NEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDN---------PYFTPLHPLLKDKSSNHLYPILMHQK-F--F 295 (375)
T ss_dssp C---CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTC---------SSEEESGGGCSSCCCCSCEEEEECGG-G--G
T ss_pred C---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------CCccccCCCCCCCcceEEEEEEeCcc-c--c
Confidence 1 122233333333467889999999999999999884 67888765211112 23444555431 1 2
Q ss_pred -CHHHHHHHHHhCCcEeccccccCcccccchHH--------HHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHH
Q 037063 489 -DPALVQKLADRHNISLSCGFLQNIFFSGEYEQ--------ERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLW 559 (588)
Q Consensus 489 -~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~--------~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li 559 (588)
+...+.+.|.++||.++.+ |.+........ ....... ...||+|++.++|.|||++++
T Consensus 296 ~~~~~l~~~L~~~gi~v~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~-----------~~~lRi~~~~~~t~~~i~~~~ 362 (375)
T 2fnu_A 296 TCKKLILESLHKRGILAQVH--YKPIYQYQLYQQLFNTAPLKSAEDFY-----------HAEISLPCHANLNLESVQNIA 362 (375)
T ss_dssp GGHHHHHHHHHHTTEECBCC--CCCGGGSHHHHHHHCCCCCHHHHHHH-----------HHEEEECCCTTCCHHHHHHHH
T ss_pred chHHHHHHHHHHCCCCcccc--ccccccchhhhcCCCccCChHHHHHH-----------hCEEEecCCCCCCHHHHHHHH
Confidence 4677888888899999843 43321110000 0000011 128999999999999999999
Q ss_pred HHHHHhhhhh
Q 037063 560 AFVSRFLDAD 569 (588)
Q Consensus 560 ~~l~~~l~~~ 569 (588)
+.|++++++.
T Consensus 363 ~~l~~~~~~~ 372 (375)
T 2fnu_A 363 HSVLKTFESF 372 (375)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987653
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=257.90 Aligned_cols=361 Identities=12% Similarity=0.042 Sum_probs=240.7
Q ss_pred eeeecCCCCCCCCHHHHHHhhhhcccCc-CCCCCCCCCCCCCCCCCcccccccccccccccccCCc--hhHHHHHHHHHH
Q 037063 112 YVCFDYIGHGLFSYSQMHSCSSNVHSSA-ASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSE--ESELESKIRKRI 188 (588)
Q Consensus 112 ~vyLD~a~~gl~~~~~~~~~~~~~~~~~-~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~~~~~~~~r~~i 188 (588)
.+.| .++.++.|+.+++++.+.+.... .++|. +. .|++. ..++++.+++++
T Consensus 46 ~i~L-~a~e~~~~~~V~eA~~~~l~~~~~~g~p~------------------------~~-~y~~~~~~~~le~~~~~~~ 99 (483)
T 1rv3_A 46 GLEL-IASENFASRAVLEALGSCLNNKYSLGYPG------------------------QR-YYGGTEHIDELETLCQKRA 99 (483)
T ss_dssp SEEC-CTTCCCCCHHHHHHHTSGGGTCCCCEETT------------------------EE-SSSCCHHHHHHHHHHHHHH
T ss_pred CeEE-EcCCCCCCHHHHHHHHHHHhccCcccCCC------------------------cc-ccCcchhHHHHHHHHHHHH
Confidence 4455 36677899999999876654211 13441 11 12221 257788999999
Q ss_pred HHHhCCCCCC--ceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHH---HHHHhcC--CEEEEEeccCCC
Q 037063 189 MDFMNISEDD--YTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMI---ESSKKRG--ARVSSAEFAWPN 260 (588)
Q Consensus 189 a~~lga~~~e--~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~---~~a~~~G--~~v~~v~~~~~~ 260 (588)
++++|+++++ ..|++++|+ +++.+++.++ ++|||+|+ ...+|.+....+.. ..++..| ++++.++++..+
T Consensus 100 a~~~g~~~~~~~~~V~~~sGs-~an~~~~~al-l~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~ 177 (483)
T 1rv3_A 100 LQAYGLDPQCWGVNVQPYSGS-PANFAVYTAL-VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDT 177 (483)
T ss_dssp HHHTTCCTTTEEEECCCSSHH-HHHHHHHHHH-TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTT
T ss_pred HHHhCCCcccCceEEEECCcH-HHHHHHHHHh-cCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCC
Confidence 9999998654 347777777 8888878888 89999966 45555542211100 0001123 455555556456
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC---CCCCCCCCCCCC
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS---KDMDTLGLSLFK 336 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~---~d~~~l~l~~~~ 336 (588)
+.+|.++|++++++ ++|++|++ +.+|++ .+.|+++| ++|+++|++|++|++|..+ .+.....+. .
T Consensus 178 ~~iD~d~le~~i~~-------~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~--~ 246 (483)
T 1rv3_A 178 GYIDYDRLEENARL-------FHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE--H 246 (483)
T ss_dssp CSBCHHHHHHHHHH-------HCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG--T
T ss_pred CcCCHHHHHHHHhh-------cCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC--C
Confidence 88999999999973 46899999 899988 99999999 9999999999999998764 112222111 3
Q ss_pred CcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccc-cCCCCCccchhhHHH
Q 037063 337 PDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS-KFPESSISGVSSKLV 415 (588)
Q Consensus 337 ~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~-e~GT~~~~~~~~~~a 415 (588)
+|++++|+||.|+. |.| |+++++++... ++ ..+ |...... . ...+... .|. ..||++...+ ++
T Consensus 247 ~div~~s~~K~l~G-prg-G~i~~~~~~~~-~~--~~~--g~~~~y~--~-~~~~~~~---~~~~~~g~~~~~~i---aa 310 (483)
T 1rv3_A 247 CHVVTTTTHKTLRG-CRA-GMIFYRRGVRS-VD--PKT--GKEILYN--L-ESLINSA---VFPGLQGGPHNHAI---AG 310 (483)
T ss_dssp CSEEEEESSGGGCC-CSC-EEEEEECSBCC------------CCBCC--H-HHHHHHH---HTTTTCCSCCHHHH---HH
T ss_pred CcEEEecCcccCCC-CCc-eEEEEcchhhh-hc--ccc--CcchhhH--H-HHHhhhh---cCCcccCCccHHHH---HH
Confidence 89999999996642 888 99999998643 33 112 1100000 0 0000000 110 3577777765 67
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHH
Q 037063 416 ECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQK 495 (588)
Q Consensus 416 l~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~ 495 (588)
+..|++.+...+++.+.+++..+++++.+.|.++ +++++.+.. ....+.+.+... | ++...+.+
T Consensus 311 l~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~~---~~~~~~v~~~~~-g--~~~~~~~~ 374 (483)
T 1rv3_A 311 VAVALKQAMTPEFKEYQRQVVANCRALSAALVEL----------GYKIVTGGS---DNHLILVDLRSK-G--TDGGRAEK 374 (483)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----------TCEEGGGSC---SSSEEEEEGGGG-T--CCHHHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc----------CCEeccCCC---CCceEEEeccCC-C--CCHHHHHH
Confidence 7788888765567899999999999999999984 466665421 123444444321 1 56778889
Q ss_pred HHHhCCcEec----cccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCC----HHHHHHHHHHHHHhhh
Q 037063 496 LADRHNISLS----CGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTN----FEDTYRLWAFVSRFLD 567 (588)
Q Consensus 496 ~l~~~gI~v~----~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t----~eDv~~li~~l~~~l~ 567 (588)
+|++.||.++ +|..|. .+.+.||+|++.+++ .+|++++++.|+++++
T Consensus 375 ~L~~~gI~v~~~~~pg~~~~-------------------------~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~ 429 (483)
T 1rv3_A 375 VLEACSIACNKNTCPGDKSA-------------------------LRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE 429 (483)
T ss_dssp HHHHTTEECEEECCSSCSCT-------------------------TSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCcEEecCCCCCCCcC-------------------------CCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHH
Confidence 9999999998 665442 223389999998888 9999999999999887
Q ss_pred h
Q 037063 568 A 568 (588)
Q Consensus 568 ~ 568 (588)
.
T Consensus 430 ~ 430 (483)
T 1rv3_A 430 L 430 (483)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-25 Score=240.81 Aligned_cols=368 Identities=12% Similarity=0.019 Sum_probs=238.0
Q ss_pred CeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHH
Q 037063 111 NYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMD 190 (588)
Q Consensus 111 ~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~ 190 (588)
...||+|..+++.|..++..+.... .|++..+ |+ .+. ...++++++++++++
T Consensus 92 ~p~~~~~~~~~~~~~~~~~~~l~~~-----~n~~~~~-----~~-------------~~~-----~~~~le~~~~~~la~ 143 (504)
T 2okj_A 92 HPRFFNQLSTGLDIIGLAGEWLTST-----ANTNMFT-----YE-------------IAP-----VFVLMEQITLKKMRE 143 (504)
T ss_dssp CTTEESSSSCCCCHHHHHHHHHHHH-----HCCBSSC-----TT-------------TCH-----HHHHHHHHHHHHHHH
T ss_pred CCCEEEEccCCCCHHHHHHHHHHHh-----hccCCCc-----hh-------------hCh-----HHHHHHHHHHHHHHH
Confidence 4569999999988877765443221 1221000 00 000 125678888999999
Q ss_pred HhCCCCCCceEEEecCHHHHHHHHHHhCCC-------CCC-----C-eEEE-cCCCchhHHHHHHHHHHhcCC---EEEE
Q 037063 191 FMNISEDDYTLVFTANQSSAFKLLAESYPF-------YSN-----P-RLLT-VYDHENEAAALMIESSKKRGA---RVSS 253 (588)
Q Consensus 191 ~lga~~~e~~vvft~g~T~al~lv~~s~~~-------~~g-----d-~ll~-~~e~~s~~~~~~~~~a~~~G~---~v~~ 253 (588)
++|++.+...++||+|+|+|+.+++.++.. ++| + +|++ ...|++ + .+.++..|. +++.
T Consensus 144 ~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s--~---~~~~~~~g~g~~~v~~ 218 (504)
T 2okj_A 144 IVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYS--I---KKAGAALGFGTDNVIL 218 (504)
T ss_dssp HHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH--H---HHHHHHTTSCGGGEEE
T ss_pred HhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHH--H---HHHHHHcCCCcccEEE
Confidence 999974234699999999999988877621 145 5 5554 456664 2 233344455 8999
Q ss_pred EeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCC-CC--
Q 037063 254 AEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDM-DT-- 329 (588)
Q Consensus 254 v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~-~~-- 329 (588)
+|.+ +++.+|+++|+++|++. +....++++|++++++|+||.+.|+++| ++|+++|++++||+++..+.-. ..
T Consensus 219 v~~~-~~~~~d~~~L~~~i~~~--~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~ 295 (504)
T 2okj_A 219 IKCN-ERGKIIPADFEAKILEA--KQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHR 295 (504)
T ss_dssp ECBC-TTSCBCHHHHHHHHHHH--HHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG
T ss_pred EecC-CCCCCCHHHHHHHHHHH--HHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhH
Confidence 9997 67899999999999731 1112368999999999999999999999 9999999999999997665211 00
Q ss_pred CCCC-CCCCcEEEeccCccCCCCCCceEEEEEeCc-chhc----ccCCCCCCCceEeeecCCCcccccccccccccccCC
Q 037063 330 LGLS-LFKPDFLICSFYKIFGENPSGFGCLFVKKS-SASV----LSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP 403 (588)
Q Consensus 330 l~l~-~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~-~~~~----l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G 403 (588)
..+. ...+|++++++||++|. |.|+|+++++++ .+.. ..++..++ +...... ..+... .. + +
T Consensus 296 ~~~~g~~~~D~i~~~~hK~~~~-p~~~g~l~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-----~~~~~~---~~-~-~ 363 (504)
T 2okj_A 296 HKLNGIERANSVTWNPHKMMGV-LLQCSAILVKEKGILQGCNQMCAGYLFQP-DKQYDVS-----YDTGDK---AI-Q-C 363 (504)
T ss_dssp GGGTTGGGCSEEEECTTSTTCC-CSCCEEEEESSTTHHHHHHCCCCSSSCCS-CCSSCGG-----GCCGGG---SS-C-S
T ss_pred hhcCCcccCCEEEECchhhcCC-CcceEEEEEECHHHHHHHhcCCCccccCC-cccccCc-----CCcccC---CC-C-C
Confidence 1122 12589999999999886 889999999985 5442 22233221 1100000 000000 00 1 1
Q ss_pred CCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecC
Q 037063 404 ESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDW 483 (588)
Q Consensus 404 T~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~ 483 (588)
+..+.. ..+..+++.+...|++++.++...+++++.+.|.++ ++++++.+.. ...++++|...+.
T Consensus 364 ~rr~~~----l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---------~~~~~~~~~~--p~~~~v~f~~~~~ 428 (504)
T 2okj_A 364 GRHVDI----FKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR---------EEFEMVFNGE--PEHTNVCFWYIPQ 428 (504)
T ss_dssp SCBCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---------TTEEESSSSC--CSSSCEEEEECCG
T ss_pred CCCccH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC---------CCEEEEecCC--CCeEEEEEEEeCc
Confidence 111111 233344555555678899999999999999999874 6789887421 3567888876431
Q ss_pred C--CCC--------c--CHHHHHHHHHhCCcE-eccccccCcccccchHHHHHHHHhhhcCCCCCcCCc-cEEEEecC-C
Q 037063 484 N--GTR--------I--DPALVQKLADRHNIS-LSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGV-SVVTAALG-C 548 (588)
Q Consensus 484 ~--g~~--------i--~~~~v~~~l~~~gI~-v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~-~~vRvSlg-~ 548 (588)
. +.. . ....+.+.|.+.|+. +..+.. .|. .++|+|++ .
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~---------------------------~~~~~~lRis~~~~ 481 (504)
T 2okj_A 429 SLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQ---------------------------GDKANFFRMVISNP 481 (504)
T ss_dssp GGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEE---------------------------TTEEEEEEECCCCT
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEE---------------------------CCceEEEEEEeCCC
Confidence 1 000 0 023455556666753 332210 122 38999996 9
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 037063 549 LTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 549 ~~t~eDv~~li~~l~~~l~~ 568 (588)
++|.+||+++++.|++++++
T Consensus 482 ~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 482 AATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp TCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=229.33 Aligned_cols=315 Identities=16% Similarity=0.189 Sum_probs=222.2
Q ss_pred CCeeeecCCCCC-CCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHG-LFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRI 188 (588)
Q Consensus 110 ~~~vyLD~a~~g-l~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~i 188 (588)
++.++|+.+... +.|+.+.+++...+.. .. .|. .....++|+.|
T Consensus 16 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~~-------------------------------~y~---~~~~~~lr~~l 60 (337)
T 3p1t_A 16 AQAVCLAFNENPEAVEPRVQAAIAAAAAR-IN-------------------------------RYP---FDAEPRVMRKL 60 (337)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHGGG-TT-------------------------------SCC---TTHHHHHHHHH
T ss_pred CCceEeeCCCCCCCCCHHHHHHHHHhhhh-hc-------------------------------cCC---CCchHHHHHHH
Confidence 567999988554 4567777776544321 10 011 12356899999
Q ss_pred HHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcC-CCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHH
Q 037063 189 MDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVY-DHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGK 267 (588)
Q Consensus 189 a~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~-e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~ 267 (588)
++++|+++++ |+||+|+|+++.+++.++ +||+|++.. .|++ . ...++..|++++.++.+ +++.+|+++
T Consensus 61 a~~~~~~~~~--i~~t~G~~~~l~~~~~~~---~gd~vl~~~p~~~~-~----~~~~~~~g~~~~~v~~~-~~~~~d~~~ 129 (337)
T 3p1t_A 61 AEHFSCPEDN--LMLVRGIDECFDRISAEF---SSMRFVTAWPGFDG-Y----RARIAVSGLRHFEIGLT-DDLLLDPND 129 (337)
T ss_dssp HHHHTSCGGG--EEEESHHHHHHHHHHHHS---TTSEEEEESSSCSH-H----HHHHTTSCCEEEEECBC-TTSSBCHHH
T ss_pred HHHhCcCHHH--EEEeCCHHHHHHHHHHhc---CCCeEEEeCCCcHH-H----HHHHHHcCCEEEEecCC-CCCCCCHHH
Confidence 9999997655 999999999999999987 799976544 4442 2 34567789999999987 567899988
Q ss_pred HHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCc--CCCCCCCCCCCCCCCcEEEecc
Q 037063 268 LMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATAL--GSKDMDTLGLSLFKPDFLICSF 344 (588)
Q Consensus 268 l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~--~~~d~~~l~l~~~~~D~vv~S~ 344 (588)
|+++ .+++++++++++|+||..+|+++| ++|+++++ +++|.++. ... ....+.....++++.|+
T Consensus 130 l~~~----------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~--~~~~~~~~~~~i~~~S~ 196 (337)
T 3p1t_A 130 LAQV----------SRDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSF--RARGLAYGENELVFRSF 196 (337)
T ss_dssp HTTC----------CTTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSC--SSSCCCCBTTEEEEEES
T ss_pred HHhh----------cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccc--cccccccCCCEEEEeeC
Confidence 7643 357899999999999999999999 99999997 66699865 221 11122223478999999
Q ss_pred CccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHH
Q 037063 345 YKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHAD 424 (588)
Q Consensus 345 ~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~ 424 (588)
+|.+|.++.++|++++++++++.+...... ++.+..+. .++..+|+...
T Consensus 197 sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~----------------------------~~~~~~~~---~a~~~~l~~~~ 245 (337)
T 3p1t_A 197 SKSYGLAGLRLGALFGPSELIAAMKRKQWF----------------------------CNVGTLDL---HALEAALDNDR 245 (337)
T ss_dssp SSTTCCTTTCCEEEECCHHHHHHHHTTSCT----------------------------TCSCHHHH---HHHHHHHTCHH
T ss_pred chhccCcchheEEEEeCHHHHHHHHhhcCC----------------------------CCCCHHHH---HHHHHHhCCHH
Confidence 999984455689999998887766543211 11222221 33334444322
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEe
Q 037063 425 ALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISL 504 (588)
Q Consensus 425 ~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v 504 (588)
. +++..+++...++++.+.|.++ +++++. ..++++.+...+ ...+.++|.++||.+
T Consensus 246 ~--~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~-----~~~~~~~~~~~~-------~~~~~~~l~~~gi~v 301 (337)
T 3p1t_A 246 A--REAHIAKTLAQRRRVADALRGL----------GYRVAS-----SEANFVLVENAA-------GERTLRFLRERGIQV 301 (337)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHT----------TCCBCC-----CSSSEEEEECTT-------THHHHHHHHHTTEEC
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHC----------cCEECC-----CCCeEEEEEcCC-------HHHHHHHHHHCCeEE
Confidence 2 4566677777888899999875 233333 245666665543 456778888999999
Q ss_pred ccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 505 SCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 505 ~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
+.|..|.. . ++||+|++ +.+|+++++++|+++++
T Consensus 302 ~~g~~~~~------------------------~--~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 302 KDAGQFGL------------------------H--HHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp EEGGGGTC------------------------C--SEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred EECccCCC------------------------C--CeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 99866520 1 28999987 79999999999998765
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=233.56 Aligned_cols=288 Identities=11% Similarity=0.083 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHhCC-CCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 181 ESKIRKRIMDFMNI-SEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 181 ~~~~r~~ia~~lga-~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
..++|+.+++++|+ +++ .|+||+|+|+|+++++.++ +++||+|++ ...|+. . ...++..|++++.++++
T Consensus 69 ~~~l~~~la~~~g~~~~~--~i~~~~g~t~a~~~~~~~~-~~~gd~Vl~~~~~~~~-~----~~~~~~~g~~~~~v~~~- 139 (367)
T 3euc_A 69 SEALRAKLKEVMQVPAGM--EVLLGNGSDEIISMLALAA-ARPGAKVMAPVPGFVM-Y----AMSAQFAGLEFVGVPLR- 139 (367)
T ss_dssp HHHHHHHHHHHHTCCTTC--EEEEEEHHHHHHHHHHHHT-CCTTCEEEEEESCSCC-S----CHHHHTTTCEEEEEECC-
T ss_pred HHHHHHHHHHHhCCCCcc--eEEEcCCHHHHHHHHHHHH-cCCCCEEEEcCCCHHH-H----HHHHHHcCCeEEEecCC-
Confidence 35899999999999 443 5999999999999999999 899999664 445543 2 23456789999999998
Q ss_pred CCCccCHHHHHHHHhhhccccCCC-cceEEEEeCCCCCCCccCCHHHH----HHHHHc--CcEEEEeCCCcCCCCCCCC-
Q 037063 259 PNLRIHSGKLMKKIVGKRKKKKKK-KRGLFVFPLQSKVTGARYSYMWM----SVAAEK--GWHVLLDATALGSKDMDTL- 330 (588)
Q Consensus 259 ~~~~i~~e~l~~~i~~~~~~~~~~-~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~--g~~vvvDaa~~~~~d~~~l- 330 (588)
+++.+|+++|+++++ + ++++|++++++|+||..+|.+++ ++|+++ |+++|+|+++..-.....+
T Consensus 140 ~~~~~d~~~l~~~l~--------~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~ 211 (367)
T 3euc_A 140 ADFTLDRGAMLAAMA--------EHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMS 211 (367)
T ss_dssp TTSCCCHHHHHHHHH--------HHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGG
T ss_pred CCCCCCHHHHHHHhh--------ccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHH
Confidence 577899999999998 4 78999999999999999986664 568889 9999999996531000000
Q ss_pred CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 331 GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
.+.....++++.|++|. |.++.++|++++++++++.+...... .+.+....
T Consensus 212 ~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~ 262 (367)
T 3euc_A 212 RLTDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLDKVRPP----------------------------YNVNVLTE 262 (367)
T ss_dssp GGGTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHGGGCCS----------------------------SCCCHHHH
T ss_pred HHhhCCCEEEEecchhh-cccccCceeeeeCHHHHHHHHHhCCC----------------------------CCCCHHHH
Confidence 12233467899999998 64345689999988877666433211 01222221
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCH
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDP 490 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~ 490 (588)
+++..+|+. .. .++++.++.+.+++++.+.|.++ |+++++. ..+.++.+.+. +.
T Consensus 263 ---~a~~~~l~~-~~-~~~~~~~~~~~~~~~l~~~l~~~---------~g~~~~~-----~~~~~~~~~~~-------~~ 316 (367)
T 3euc_A 263 ---ATALFALEH-VA-VLDEQAAQLRAERSRVAEGMAAH---------GGVTVFP-----SAANFLLARVP-------DA 316 (367)
T ss_dssp ---HHHHHHHTT-HH-HHHHHHHHHHHHHHHHHHHHHTS---------TTCEECC-----CSSSEEEEECS-------CH
T ss_pred ---HHHHHHhcC-HH-HHHHHHHHHHHHHHHHHHHHHhC---------CCcEECC-----CCCeEEEEECC-------CH
Confidence 344455655 22 26888899999999999999884 5666543 24566666654 36
Q ss_pred HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 491 ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 491 ~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
..+.+.|.++||.++.|..|.. .+.++||+|++ +.+|++++++.|+++++
T Consensus 317 ~~l~~~l~~~gi~v~~~~~~~~------------------------~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 317 AQTFDRLLARKVLIKNVSKMHP------------------------LLANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp HHHHHHHHTTTEECEECGGGCG------------------------GGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCeEEEECCccCC------------------------CCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 7788888999999998866521 11229999987 89999999999998764
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-25 Score=232.74 Aligned_cols=309 Identities=12% Similarity=0.067 Sum_probs=215.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
.++.+++++.+++.+|.+.+...|+||+|+|+|+.+++.++ +++||+|++....+... ...++..|++++.++++
T Consensus 65 ~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~vl~~~~~~~~~----~~~~~~~g~~~~~~~~~ 139 (391)
T 3dzz_A 65 AEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQF-TSPGDQILVQEPVYNMF----YSVIEGNGRRVISSDLI 139 (391)
T ss_dssp HHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHH-SCTTCEEEECSSCCHHH----HHHHHHTTCEEEECCCE
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHh-CCCCCeEEECCCCcHHH----HHHHHHcCCEEEEeeee
Confidence 57788899999999884333345999999999999999999 89999977654433312 34556789999999985
Q ss_pred C--CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCH---HHH-HHHHHcCcEEEEeCCCcCCC-C-CCC
Q 037063 258 W--PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSY---MWM-SVAAEKGWHVLLDATALGSK-D-MDT 329 (588)
Q Consensus 258 ~--~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl---~~I-~~a~~~g~~vvvDaa~~~~~-d-~~~ 329 (588)
+ .+..+|+++|+++|++ +++++|++++++|+||..+|. ++| ++|+++|+++|+|+++.... . ...
T Consensus 140 ~~~~~~~~d~~~l~~~l~~-------~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~ 212 (391)
T 3dzz_A 140 YENSKYSVNWADLEEKLAT-------PSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDI 212 (391)
T ss_dssp EETTEEECCHHHHHHHHTS-------TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC
T ss_pred ecCCceeecHHHHHHHHhc-------cCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCc
Confidence 2 2334899999999972 579999999999999999664 556 78999999999999976421 0 011
Q ss_pred CCCCCC---CCc--EEEeccCccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCC
Q 037063 330 LGLSLF---KPD--FLICSFYKIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP 403 (588)
Q Consensus 330 l~l~~~---~~D--~vv~S~~K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G 403 (588)
..+... .+| +++.|+||.+|.++.++|+++++ +++++.+...... + ...
T Consensus 213 ~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~------------------------~-~~~ 267 (391)
T 3dzz_A 213 TPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFL------------------------A-GIG 267 (391)
T ss_dssp CCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHH------------------------H-TCS
T ss_pred eehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHh------------------------h-ccC
Confidence 111111 156 99999999887434569999997 6666655432110 0 111
Q ss_pred CCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecC
Q 037063 404 ESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDW 483 (588)
Q Consensus 404 T~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~ 483 (588)
+.+.... +++..+++..... ++++.++.+.+++++.+.|.++ .|+++++.+. .+.++.+.+...
T Consensus 268 ~~~~~~~---~a~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~l~~~--------~~~~~~~~~~----~~~~~~~~~~~~ 331 (391)
T 3dzz_A 268 EPNLLAI---PAAIAAYEEGHDW-LRELKQVLRDNFAYAREFLAKE--------VPEVKVLDSN----ASYLAWVDISAL 331 (391)
T ss_dssp SCCTTHH---HHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHH--------CTTSEECCCC----BSSEEEEECGGG
T ss_pred CCCHHHH---HHHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhh--------CCCcEEeccC----ceEEEEEehhhc
Confidence 2333332 4444566543222 6788889999999999999882 2567776542 233333555431
Q ss_pred CCCCcCHHHHHHHH-HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHH
Q 037063 484 NGTRIDPALVQKLA-DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 484 ~g~~i~~~~v~~~l-~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l 562 (588)
| ++...+.+.| +++||.+++|..|.. .+.++||+|++ ++.+|++++++.|
T Consensus 332 -~--~~~~~~~~~l~~~~gi~v~~g~~~~~------------------------~~~~~iRis~~--~~~~~i~~~l~~l 382 (391)
T 3dzz_A 332 -G--MNAEDFCKYLREKTGLIISAGNGYRG------------------------NGHEFVRINLA--CPKELVIDGMQRL 382 (391)
T ss_dssp -C--SCHHHHHHHHHHHHCEECEESGGGCT------------------------TGGGEEEEECC--SCHHHHHHHHHHH
T ss_pred -C--CCHHHHHHHHHHhCCEEEeCchhhCC------------------------CCCCEEEEEec--CCHHHHHHHHHHH
Confidence 1 4567776666 689999999876631 12239999988 6999999999999
Q ss_pred HHhhhh
Q 037063 563 SRFLDA 568 (588)
Q Consensus 563 ~~~l~~ 568 (588)
++++++
T Consensus 383 ~~~l~~ 388 (391)
T 3dzz_A 383 KQGVLN 388 (391)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 998764
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-24 Score=231.43 Aligned_cols=301 Identities=13% Similarity=0.027 Sum_probs=219.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
.+...++++.|++++|++ .+++++++++|+..++.++ +++||+|++....|.... ..++..|++++.++.
T Consensus 108 ~~~~~~l~~~la~~~g~~----~~i~~~sGs~a~~~al~~l-~~~gd~vl~~~~~h~~~~----~~~~~~g~~~~~~~~- 177 (427)
T 2w8t_A 108 FHDHMEVEQALRDFYGTT----GAIVFSTGYMANLGIISTL-AGKGEYVILDADSHASIY----DGCQQGNAEIVRFRH- 177 (427)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHH-SCTTCEEEEETTCCHHHH----HHHHHSCSEEEEECT-
T ss_pred cHHHHHHHHHHHHHhCCC----ceEEecCcHHHHHHHHHHh-cCCCCEEEECCcccHHHH----HHHHHcCCeeEEeCC-
Confidence 366789999999999984 2667777778988888888 889999776655554233 334567999888763
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCC---C----C
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDM---D----T 329 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~---~----~ 329 (588)
+|+++|+++|.+ ....++++|++++++|++|.+.|+++| ++|+++|+++|+|+++..+.-- . .
T Consensus 178 -----~d~~~le~~l~~----~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~ 248 (427)
T 2w8t_A 178 -----NSVEDLDKRLGR----LPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEA 248 (427)
T ss_dssp -----TCHHHHHHHHHT----SCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHH
T ss_pred -----CCHHHHHHHHHh----ccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhh
Confidence 588999999972 111278999999999999999999999 9999999999999998775210 0 0
Q ss_pred CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 330 LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 330 l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
+++. .++|+++.|++|++| +.| |++++++++++.+.+.... + . ..++.+..+
T Consensus 249 ~~~~-~~~di~~~s~sK~~g--~~g-G~v~~~~~l~~~l~~~~~~----------------~------~--~~~~~~~~~ 300 (427)
T 2w8t_A 249 QGLE-GQIDFVVGTFSKSVG--TVG-GFVVSNHPKFEAVRLACRP----------------Y------I--FTASLPPSV 300 (427)
T ss_dssp TTCT-TCCSEEEEESSSTTC--SCC-EEEEECCTTGGGGGGTCHH----------------H------H--SSCCCCHHH
T ss_pred cCCC-cCCcEEEecchhhhc--cCC-CEEEeCHHHHHHHHHhccc----------------c------c--ccCCCCHHH
Confidence 3432 247999999999999 557 9999999887766543100 0 1 122344433
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcC
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRID 489 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~ 489 (588)
. +++.++|+.+.. ++.+.++++.+++++.+.|.++ +++++++. ..++++.+.+.+. ..
T Consensus 301 ~---aa~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~---~~~~~~~~~~~~~----~~ 358 (427)
T 2w8t_A 301 V---ATATTSIRKLMT--AHEKRERLWSNARALHGGLKAM----------GFRLGTET---CDSAIVAVMLEDQ----EQ 358 (427)
T ss_dssp H---HHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHH----------TCEESCSS---CCSSEEEEEESSH----HH
T ss_pred H---HHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc----------CCcccCCC---CCCCEEEEEECCH----HH
Confidence 2 455577777653 4788999999999999999985 34555332 2568888887531 23
Q ss_pred HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 490 PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 490 ~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
...+.+.|.++||.++.|..+.. ..+...||++++.+++.+||+++++.|++++++.
T Consensus 359 ~~~l~~~L~~~Gi~v~~~~~~~~-----------------------~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~ 415 (427)
T 2w8t_A 359 AAMMWQALLDGGLYVNMARPPAT-----------------------PAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAV 415 (427)
T ss_dssp HHHHHHHHHHTTEECEEECTTTS-----------------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCeEEeeeCCCCC-----------------------CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 45666777777999988754310 0223489999999999999999999999988654
Q ss_pred h
Q 037063 570 F 570 (588)
Q Consensus 570 ~ 570 (588)
.
T Consensus 416 ~ 416 (427)
T 2w8t_A 416 G 416 (427)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=243.27 Aligned_cols=311 Identities=12% Similarity=0.057 Sum_probs=232.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCC-----CC---CeEEEcCCCchhHHHHHHHHHHhcCC
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFY-----SN---PRLLTVYDHENEAAALMIESSKKRGA 249 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~-----~g---d~ll~~~e~~s~~~~~~~~~a~~~G~ 249 (588)
.++++++++++++++|++.+...++||+|+|+|+.+++.++ .+ +| ++|+++...|. ++ ...++..|+
T Consensus 106 ~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~-~~~~~~~~g~~~~~Vi~~~~~h~-~~---~~~~~~~G~ 180 (497)
T 3mc6_A 106 RKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSA-KMYALHHRGITEPEIIAPVTAHA-GF---DKAAYYFGM 180 (497)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHH-HHHHHHHSCCSSCEEEEETTSCH-HH---HHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHH-HHHHHhcCCCCCceEEEeCCccH-HH---HHHHHHcCC
Confidence 57888999999999999733345999999999999999887 22 34 77665544443 22 445667899
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC----
Q 037063 250 RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS---- 324 (588)
Q Consensus 250 ~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~---- 324 (588)
+++.++++..++.+|+++|+++|+ +++++|++++++|+||.+.|+++| ++|+++|+++|+|+++...
T Consensus 181 ~~~~v~~~~~~~~~d~~~l~~~i~--------~~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f 252 (497)
T 3mc6_A 181 KLRHVELDPTTYQVDLGKVKKFIN--------KNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSF 252 (497)
T ss_dssp EEEEECBCTTTCSBCTTTTGGGCC--------SSEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGG
T ss_pred eEEEEecCcccCcCCHHHHHHHHh--------hCCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhh
Confidence 999999984378899999999987 679999999999999999999999 9999999999999997621
Q ss_pred -----C-CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCC--CceEeeecCCCcccccccccc
Q 037063 325 -----K-DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSV--STIMGIEPSFSEIIELETLDE 396 (588)
Q Consensus 325 -----~-d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~--~g~v~~~~~~~~~~~~~~~~~ 396 (588)
. .+.+++....++|++++|+||+++. |.|+|+++++++.+.......... .+.. .
T Consensus 253 ~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------------~---- 315 (497)
T 3mc6_A 253 MEKAGYKNLPLLDFRVPGVTSISCDTHKYGFA-PKGSSVIMYRNSDLRMHQYYVNPAWTGGLY------------G---- 315 (497)
T ss_dssp GTTTTCCSCCCCSTTSTTCCEEEEETTTTTCC-CSSCEEEECSSHHHHTTTSCCBTTCTTSCB------------C----
T ss_pred hhhhcccCCccccccCCCCcEEEECchhhcCC-CCCceeEEecCHHHHhhhhcccccccCCCc------------C----
Confidence 0 0113444455699999999997642 889999999987665432211110 0000 0
Q ss_pred cccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE
Q 037063 397 SSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL 476 (588)
Q Consensus 397 ~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv 476 (588)
.+...|+.+...+ +++..+++.+...|++++.++...+++++.+.|.+. +++++++++ .+++++
T Consensus 316 -~~~~~g~~~~~~~---~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~--------~~g~~~~~~----~~~~~v 379 (497)
T 3mc6_A 316 -SPTLAGSRPGAIV---VGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN--------IPDLDIMGN----PRYSVI 379 (497)
T ss_dssp -CSSSCSSCBHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CTTCEECSC----CCSSEE
T ss_pred -CcCcccCCcchhH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCEEEecC----CCeeEE
Confidence 0001233333222 566788888888788999999999999999999982 267888765 357888
Q ss_pred EEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHH
Q 037063 477 AFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTY 556 (588)
Q Consensus 477 ~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~ 556 (588)
.|...+ ++...+.+.|.++||.++.+..+ ..+|+++. .++.||++
T Consensus 380 ~~~~~~-----~~~~~l~~~L~~~Gi~v~~~~~~-----------------------------~~~ri~~~-~~t~e~i~ 424 (497)
T 3mc6_A 380 SFSSKT-----LNIHELSDRLSKKGWHFNALQKP-----------------------------VALHMAFT-RLSAHVVD 424 (497)
T ss_dssp EEECTT-----TTHHHHHHHHHTTTCBCEECCSS-----------------------------CCEEEECC-TTTTCTHH
T ss_pred EEeCCC-----CCHHHHHHHHHhCCEEEecCCCC-----------------------------CeEEEEEe-CCCHHHHH
Confidence 887654 56788888888899988755222 15788888 78999999
Q ss_pred HHHHHHHHhhhhh
Q 037063 557 RLWAFVSRFLDAD 569 (588)
Q Consensus 557 ~li~~l~~~l~~~ 569 (588)
++++.|+++++..
T Consensus 425 ~~~~~L~~~l~~~ 437 (497)
T 3mc6_A 425 EICDILRTTVQEL 437 (497)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=232.74 Aligned_cols=332 Identities=11% Similarity=0.052 Sum_probs=224.9
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
+..+|||+++.++.++.+++++.+.+.. +... .| ..++.++++++++
T Consensus 13 p~~i~l~~~~~~~~~~~v~~a~~~~~~~--~~~~-----------------------------~g--~~~~~~~~~~~l~ 59 (359)
T 1svv_A 13 PKPYSFVNDYSVGMHPKILDLMARDNMT--QHAG-----------------------------YG--QDSHCAKAARLIG 59 (359)
T ss_dssp --CEECSCSCSSCCCHHHHHHHHHHTTC--CCCS-----------------------------TT--CSHHHHHHHHHHH
T ss_pred CeeEEecCCCcCCCCHHHHHHHHHHHhh--cccc-----------------------------cc--ccHHHHHHHHHHH
Confidence 4689999999999999999998665521 1100 01 1467889999999
Q ss_pred HHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHH
Q 037063 190 DFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKL 268 (588)
Q Consensus 190 ~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l 268 (588)
+++|+++++ |+||+|+|+|+.+++.++ .++||+|++. ..|++ .... ..++..|++++.++.+ ++.+|+++|
T Consensus 60 ~~~g~~~~~--v~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~-~~~~--~~~~~~g~~~~~v~~~--~~~~d~~~l 131 (359)
T 1svv_A 60 ELLERPDAD--VHFISGGTQTNLIACSLA-LRPWEAVIATQLGHIS-THET--GAIEATGHKVVTAPCP--DGKLRVADI 131 (359)
T ss_dssp HHHTCTTSE--EEEESCHHHHHHHHHHHH-CCTTEEEEEETTSHHH-HSST--THHHHTTCCEEEECCT--TSCCCHHHH
T ss_pred HHhCCCCcc--EEEeCCchHHHHHHHHHH-hCCCCEEEEcccchHH-HHHH--HHHhcCCCeeEEEeCC--CCeecHHHH
Confidence 999987654 999999999999999998 7899997654 44543 2211 1346689999999975 678999999
Q ss_pred HHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCC---cCCCCCCCCCCCC----CCC
Q 037063 269 MKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATA---LGSKDMDTLGLSL----FKP 337 (588)
Q Consensus 269 ~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~---~~~~d~~~l~l~~----~~~ 337 (588)
++++++. ......++++|+++++ |+||..+| +++| ++|+++|+++|+|+++ ..+. ...+... ..+
T Consensus 132 ~~~l~~~-~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~~ 207 (359)
T 1svv_A 132 ESALHEN-RSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSS--PVNDLTLADIARLT 207 (359)
T ss_dssp HHHHHHS-CSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTS--TTCCCCHHHHHHHC
T ss_pred HHHHHHH-HhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcC--CCcchhhhhhhhcC
Confidence 9999720 0011125899999998 78999999 7778 9999999999999997 3331 1122111 247
Q ss_pred cEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHH
Q 037063 338 DFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVEC 417 (588)
Q Consensus 338 D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~ 417 (588)
|+++.|+||+.| |.|+|++++++++++.+.+....+ +. .+ ..+.+ .. +++
T Consensus 208 d~~~~s~~K~g~--~~~~g~l~~~~~~~~~~~~~~~~~-~~-------------------~~-~~~~~---~~---~~~- 257 (359)
T 1svv_A 208 DMFYIGATKAGG--MFGEALIILNDALKPNARHLIKQR-GA-------------------LM-AKGWL---LG---IQF- 257 (359)
T ss_dssp SEEEEECTTTTC--SSCEEEEECSGGGCTTHHHHHHHT-TC-------------------CC-TTTHH---HH---HHH-
T ss_pred CEEEEecccCCC--CCceEEEEEcccHHHHHHHHHhcC-Cc-------------------cc-ccchh---hH---HHH-
Confidence 999999999855 889999999988876665432110 10 00 00100 11 121
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHH
Q 037063 418 KGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLA 497 (588)
Q Consensus 418 ~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l 497 (588)
...+...+++++.++.+++++++.+.| +. +++++++|. .+.++.+.+. ..+.+.|
T Consensus 258 --~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~---------~~~~~~~~~----~~~~~~~~~~---------~~~~~~l 312 (359)
T 1svv_A 258 --EVLMKDNLFFELGAHSNKMAAILKAGL-EA---------CGIRLAWPS----ASNQLFPILE---------NTMIAEL 312 (359)
T ss_dssp --HHHTSTTHHHHHHHHHHHHHHHHHHHH-HH---------TTCCBSSCC----SSSEECBEEE---------HHHHHHH
T ss_pred --HHHHhhhhHHHHHHHHHHHHHHHHHHh-cc---------CCeEEccCC----ccceEEEEcC---------HHHHHHH
Confidence 122333346788899999999999999 43 345555542 3444444432 3455555
Q ss_pred HhC-CcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 498 DRH-NISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 498 ~~~-gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.++ ||.+. +... .+.++||+++++.++.+|++++++.|++++++
T Consensus 313 ~~~~gi~v~-~~~~--------------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 313 NNDFDMYTV-EPLK--------------------------DGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp TTTEECEEE-EEET--------------------------TTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred HHhcCEEEE-eccc--------------------------CCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 555 99882 2100 12238999999999999999999999988754
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=234.59 Aligned_cols=294 Identities=14% Similarity=0.083 Sum_probs=213.9
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEecc--C
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFA--W 258 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~--~ 258 (588)
.++|+.|++++++++++ |+||+|+|+|+.+++.++ +++||+|+ ....|++ . ...++..|++++.++.+ .
T Consensus 64 ~~l~~~la~~~~~~~~~--v~~~~g~~~a~~~~~~~~-~~~gd~Vl~~~~~~~~-~----~~~~~~~g~~~~~v~~~~~~ 135 (381)
T 1v2d_A 64 PALREALAEEFAVEPES--VVVTSGATEALYVLLQSL-VGPGDEVVVLEPFFDV-Y----LPDAFLAGAKARLVRLDLTP 135 (381)
T ss_dssp HHHHHHHHHHHTSCGGG--EEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCTT-H----HHHHHHTTCEEEEEECEEET
T ss_pred HHHHHHHHHhcCCChhh--EEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchh-H----HHHHHHcCCEEEEEeCCCCC
Confidence 48999999999998765 999999999999999998 88999965 4555654 2 23456789999999986 3
Q ss_pred CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcCCCC-CCCCCCC
Q 037063 259 PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALGSKD-MDTLGLS 333 (588)
Q Consensus 259 ~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~~d-~~~l~l~ 333 (588)
+++.+|+++|+++++ +++++|++++++|+||.++| +++| ++|+++|+++|+|+++..... ....++.
T Consensus 136 ~~~~~d~~~l~~~l~--------~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~ 207 (381)
T 1v2d_A 136 EGFRLDLSALEKALT--------PRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLR 207 (381)
T ss_dssp TEEECCHHHHHTTCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHH
T ss_pred ccCCcCHHHHHHhcC--------cCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHH
Confidence 456789999998887 67999999999999999998 6667 889999999999999764210 0111111
Q ss_pred --CCCCcEEEeccCccCCCCCCc--eEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 334 --LFKPDFLICSFYKIFGENPSG--FGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 334 --~~~~D~vv~S~~K~~G~~P~G--~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
..+.|+++.|+||++| +.| +|++++++++++.+...... ...+.+...
T Consensus 208 ~~~~~~~~~~~s~sK~~~--~~G~r~G~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~ 259 (381)
T 1v2d_A 208 EFAPERTFTVGSAGKRLE--ATGYRVGWIVGPKEFMPRLAGMRQW--------------------------TSFSAPTPL 259 (381)
T ss_dssp HHCTTTEEEEEEHHHHTT--CGGGCCEEEECCTTTHHHHHHHHHH--------------------------HTSSCCHHH
T ss_pred HhcCCCEEEEeechhhcC--CcccceEEEEeCHHHHHHHHHHHhh--------------------------cccCCCcHH
Confidence 2358999999999998 446 89999998887665422100 011222222
Q ss_pred hhhHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 410 VSSKLVECKGLDHAD-ALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 410 ~~~~~al~~aL~~l~-~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
. +++..+|+... ..+++++.++.+.+++++.+.|.++ +++++.+. .+.++.+.+.+ .
T Consensus 260 ~---~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~----~~~~~~~~~~~-----~ 317 (381)
T 1v2d_A 260 Q---AGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM----------GLRVYVPE----GTYFLMAELPG-----W 317 (381)
T ss_dssp H---HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT----------TCCEECCS----BSSEEEEECTT-----C
T ss_pred H---HHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC----------CCEecCCC----cceEEEEecCh-----H
Confidence 1 44556666542 2236888999999999999999884 34555542 24455566543 1
Q ss_pred CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 489 DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 489 ~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+ +.+++.++||.+++|..|... ..+..+||+|++. +.+||+++++.|++++++
T Consensus 318 ~---~~~~l~~~gi~v~~g~~~~~~----------------------~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~ 370 (381)
T 1v2d_A 318 D---AFRLVEEARVALIPASAFYLE----------------------DPPKDLFRFAFCK--TEEELHLALERLGRVVNS 370 (381)
T ss_dssp C---HHHHHHHTCEECEEGGGGCSS----------------------SCCTTEEEEECCS--CHHHHHHHHHHHHHHC--
T ss_pred h---HHHHHHhCCEEEecchHhCCC----------------------CCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence 2 778889999999988665310 0122389999986 899999999999998765
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-25 Score=239.02 Aligned_cols=306 Identities=18% Similarity=0.159 Sum_probs=208.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....+++|++|++++|++ +.|+|++| ++|+++++.++ +++||+|++....+...+.++...++..|+++++++.+
T Consensus 113 ~~~~~~l~~~lA~l~g~~---~~v~~~sG-~~Ai~~al~~l-~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 187 (445)
T 1qgn_A 113 NPTTVVLEEKISALEGAE---STLLMASG-MCASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA 187 (445)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESCH-HHHHHHHHHHH-SCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS
T ss_pred ChHHHHHHHHHHHHhCCC---cEEEeCCH-HHHHHHHHHHH-hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 567889999999999984 23555555 59999999988 88999976544444435555444567789999999864
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcc-eEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKR-GLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t-~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
|+++|+++|+ ++| ++|++++++|++|.+.|+++| ++|+++|+++++|+++..+....+++ +
T Consensus 188 ------d~~~l~~ai~--------~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~~~---~ 250 (445)
T 1qgn_A 188 ------DVGALELALN--------QKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALA---L 250 (445)
T ss_dssp ------CHHHHHHHHH--------HSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTT---T
T ss_pred ------CHHHHHHHhc--------cCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCccc---c
Confidence 7899999998 578 999999999999999999999 99999999999999988763223332 3
Q ss_pred CCcEEEeccCccCCCCCCc---eEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhh
Q 037063 336 KPDFLICSFYKIFGENPSG---FGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSS 412 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G---~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~ 412 (588)
++|+++.|+||++| |.| +|++++++++++.+...... ..++.+....
T Consensus 251 g~Div~~S~sK~~g--g~gd~~~G~l~~~~~l~~~l~~~~~~--------------------------~g~~~~~~~a-- 300 (445)
T 1qgn_A 251 GADLVLHSATKFLG--GHNDVLAGCISGPLKLVSEIRNLHHI--------------------------LGGALNPNAA-- 300 (445)
T ss_dssp TCSEEEECTTTTTT--CSSSCCCEEEEECHHHHHHHHHHHHH--------------------------HCCCCCHHHH--
T ss_pred CCEEEEECCccccc--ccccceEEEEEECHHHHHHHHHHHHH--------------------------hCCCCCHHHH--
Confidence 49999999999999 666 99999998877665422100 0111221111
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCC------------CCcccEEEEE
Q 037063 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVM------------FDRGPSLAFN 479 (588)
Q Consensus 413 ~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~------------~~rg~iv~f~ 479 (588)
+.+..+++.+ ....++....++++.+.|.++ |.+ +++.|..+ ...+++++|.
T Consensus 301 -~~~~~~l~~l-----~~r~~~~~~~a~~l~~~L~~~---------p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~ 365 (445)
T 1qgn_A 301 -YLIIRGMKTL-----HLRVQQQNSTALRMAEILEAH---------PKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFE 365 (445)
T ss_dssp -HHHHHHGGGH-----HHHHHHHHHHHHHHHHHHHTC---------TTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEE
T ss_pred -HHHHHhHHHH-----HHHHHHHHHHHHHHHHHHhcC---------CCceEEECCCCCCCchHHHHHHhccCCCcEEEEE
Confidence 1222344433 222333344467777778763 556 67766321 1257899999
Q ss_pred eecCCCCCcCHHHHHHHHHhC---CcEeccccccCcccccchHH---HHHHHHhhhcCCCCCcCCc--cEEEEecCCCCC
Q 037063 480 VFDWNGTRIDPALVQKLADRH---NISLSCGFLQNIFFSGEYEQ---ERVRVLETRSGTNETRSGV--SVVTAALGCLTN 551 (588)
Q Consensus 480 ~~~~~g~~i~~~~v~~~l~~~---gI~v~~G~~c~~~~~~~~~~---~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~~t 551 (588)
+.+ ..+...+++++. +|.++.|..|+......... .....+.. .|. +.||+|+|
T Consensus 366 l~~------~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~--------~g~~~~~iRlSvG---- 427 (445)
T 1qgn_A 366 VDG------DLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAK--------YGIMDNLVRFSFG---- 427 (445)
T ss_dssp ESS------CHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHT--------TTCCSSEEEEECC----
T ss_pred ECC------CHHHHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHh--------cCCCCCeEEEEec----
Confidence 875 134455555554 78889998886421110000 00011111 333 39999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 037063 552 FEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 552 ~eDv~~li~~l~~~l~~ 568 (588)
.||++.+++.|++.+++
T Consensus 428 ~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 428 VEDFDDLKADILQALDS 444 (445)
T ss_dssp SSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 47999999999988763
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=232.13 Aligned_cols=322 Identities=11% Similarity=0.045 Sum_probs=211.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+++|+++++++|++ .++||+|+|+|+++++.++ +++||+|+ ....|++ .+..+...++..|++++.++.
T Consensus 55 ~~~~~~l~~~la~~~g~~----~~~~~~~gt~a~~~al~~l-~~~gd~vi~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~ 128 (412)
T 2cb1_A 55 DPTAKALEERLKALEGAL----EAVVLASGQAATFAALLAL-LRPGDEVVAAKGLFGQ-TIGLFGQVLSLMGVTVRYVDP 128 (412)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHTT-CCTTCEEEEETTCCHH-HHHHHHHTTTTTTCEEEEECS
T ss_pred ChHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEeCCCchh-HHHHHHHHHHHcCCEEEEECC
Confidence 466789999999999984 3999999999999999998 89999965 5666765 333323445678999999875
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-CCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS-KDMDTLGLSL 334 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~-~d~~~l~l~~ 334 (588)
+ +++|+++|+ +++++|++++++|++|.+.|+++| ++|+++|+++|+|+++..+ ....+++
T Consensus 129 ~-------~~~l~~~i~--------~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~--- 190 (412)
T 2cb1_A 129 E-------PEAVREALS--------AKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLA--- 190 (412)
T ss_dssp S-------HHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGG---
T ss_pred C-------HHHHHHHhc--------cCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCccc---
Confidence 3 788999887 689999999999999999999999 9999999999999998876 3333332
Q ss_pred CCCcEEEeccCccCCCCCCc-eEEEEEeCcchh-----cccCCCCCCCceEeeecCCCccccccccccccc--ccCCCCC
Q 037063 335 FKPDFLICSFYKIFGENPSG-FGCLFVKKSSAS-----VLSGSTSSVSTIMGIEPSFSEIIELETLDESSQ--SKFPESS 406 (588)
Q Consensus 335 ~~~D~vv~S~~K~~G~~P~G-~G~L~v~~~~~~-----~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f--~e~GT~~ 406 (588)
..+|+++.|+||++|. |.+ +|++++.++... .+.+.... |....... +...+..+ .+.+ ...|. .
T Consensus 191 ~~~di~~~S~~K~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~--~~~~~~~~-~r~~~~~~~g~-~ 263 (412)
T 2cb1_A 191 WGAHVVVESLTKWASG-HGSVLGGAVLSRETELWRNYPQFLQPDLK--GQIPWEAL--RARCFPER-VRTLGLSLCGM-A 263 (412)
T ss_dssp GTCSEEEEETTTTTTC-SSCCCCEEEEECCCSGGGGSGGGGCC---------HHHH--GGGHHHHH-HHHHHTTTTCC-C
T ss_pred cCCeEEEECCcccccC-CCCcEEEEEEecccccccccccccccccc--ccchhhcc--chHHHHHH-HHHHHHHhcCC-C
Confidence 3489999999998874 555 888888774321 12221111 11100000 00000000 0001 01222 1
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEE-EeCCCCC------------CCcc
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVR-IYGPKVM------------FDRG 473 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~-i~~p~~~------------~~rg 473 (588)
.... +...++..++. ++...++...+++++.+.|.+. +++. +++|... ...+
T Consensus 264 ~~~~----~a~~~~~~l~~--l~~~~~~~~~~~~~l~~~L~~~---------~~v~~v~~p~~~~~p~~~~~~~~~~~~~ 328 (412)
T 2cb1_A 264 LSPF----NAYLLFQGLET--VALRVARMSETARFLAERLQGH---------PKVKALRYPGLPEDPAHRNARKYLASGG 328 (412)
T ss_dssp CCHH----HHHHHHHHGGG--HHHHHHHHHHHHHHHHHHHHTC---------TTCSEEECTTSTTCTTHHHHHHHCSSSC
T ss_pred CChH----HhHHHHcCCch--HHHHHHHHHHHHHHHHHHHHcC---------CCeeEEECCCCCCCccHHHHHHhCCCCc
Confidence 1111 11112222222 3455566678889999999874 4554 5455321 1357
Q ss_pred cEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccc---------cccCcccccchHHHHHHHHhhhcCCCCCcCC--ccEE
Q 037063 474 PSLAFNVFDWNGTRIDPALVQKLADRHNISLSCG---------FLQNIFFSGEYEQERVRVLETRSGTNETRSG--VSVV 542 (588)
Q Consensus 474 ~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G---------~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g--~~~v 542 (588)
++++|.+ + +.+.+.+++++.||.+ .| ++|......... ...+.. .| .+.|
T Consensus 329 ~iv~~~~-~------~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~---~~~~~~--------~g~~~~~i 389 (412)
T 2cb1_A 329 PILTLDL-G------DLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLK---EEARLQ--------AGVTPGLV 389 (412)
T ss_dssp SEEEEEC-S------SHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSC---HHHHHH--------TTCCTTEE
T ss_pred eEEEEEe-C------CHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCC---HHHHHh--------cCCCCCeE
Confidence 8999998 4 2678889999999999 87 456433211000 011111 23 2499
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q 037063 543 TAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 543 RvSlg~~~t~eDv~~li~~l~~ 564 (588)
|+|+|.+++.++|++++++|++
T Consensus 390 R~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 390 RVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp EEECCSSCHHHHHHHHHHHHHC
T ss_pred EEEeccCCHHHHHHHHHHHHhh
Confidence 9999999999999999999864
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-24 Score=231.29 Aligned_cols=342 Identities=10% Similarity=0.068 Sum_probs=235.7
Q ss_pred CCeeeecCCCCCCC----CHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHH
Q 037063 110 NNYVCFDYIGHGLF----SYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIR 185 (588)
Q Consensus 110 ~~~vyLD~a~~gl~----~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r 185 (588)
++..|+|.++..++ ++.+++++.+.+.. ++++++ .+...+|. .....++|
T Consensus 43 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~--~~~~~~----------------------~~~~~~g~--~~~~~~l~ 96 (401)
T 1fc4_A 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDS--HGFGMA----------------------SVRFICGT--QDSHKELE 96 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHH--HCSCCC----------------------SCHHHHCC--BHHHHHHH
T ss_pred CCccEEEeeccCcccccCCHHHHHHHHHHHHH--hCCCCC----------------------CCCcccCC--cHHHHHHH
Confidence 46678898876554 67888887655532 122110 00111111 35678999
Q ss_pred HHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCH
Q 037063 186 KRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHS 265 (588)
Q Consensus 186 ~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~ 265 (588)
+.|++++|++ + .++++++|+|+.+++.++ +++||+|++....|.... ..++..|++++.++. +|.
T Consensus 97 ~~la~~~g~~--~--~i~~~sGs~a~~~~~~~~-~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~------~d~ 161 (401)
T 1fc4_A 97 QKLAAFLGME--D--AILYSSCFDANGGLFETL-LGAEDAIISDALNHASII----DGVRLCKAKRYRYAN------NDM 161 (401)
T ss_dssp HHHHHHHTCS--E--EEEESCHHHHHHTTHHHH-CCTTCEEEEETTCCHHHH----HHHHTSCSEEEEECT------TCH
T ss_pred HHHHHHhCCC--c--EEEeCChHHHHHHHHHHH-cCCCCEEEEcchhHHHHH----HHHHHcCCceEEECC------CCH
Confidence 9999999985 2 456666788999988888 889999776554443222 345678999988863 478
Q ss_pred HHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCC---CCC----CCCCCCCC
Q 037063 266 GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKD---MDT----LGLSLFKP 337 (588)
Q Consensus 266 e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d---~~~----l~l~~~~~ 337 (588)
++|+++|++. .....++++|++++++|+||..+|+++| ++|+++|+++|+|+++..+.. -.. +++.. .+
T Consensus 162 ~~l~~~l~~~--~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~ 238 (401)
T 1fc4_A 162 QELEARLKEA--REAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RV 238 (401)
T ss_dssp HHHHHHHHHH--HHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CC
T ss_pred HHHHHHHHHh--hccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCc-CC
Confidence 9999988721 0001168999999999999999999999 999999999999999864421 000 34332 47
Q ss_pred cEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHH
Q 037063 338 DFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVEC 417 (588)
Q Consensus 338 D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~ 417 (588)
|+++.|+||+++. +.| |++++++++++.+...... + .+ .++.+.... +++.
T Consensus 239 di~~~s~sK~~~~-~~g-G~~~~~~~~~~~l~~~~~~----------------~------~~--~~~~~~~~~---~a~~ 289 (401)
T 1fc4_A 239 DIITGTLGKALGG-ASG-GYTAARKEVVEWLRQRSRP----------------Y------LF--SNSLAPAIV---AASI 289 (401)
T ss_dssp SEEEEESSSTTCS-SSC-EEEEECHHHHHHHHHHCHH----------------H------HH--SCCCCHHHH---HHHH
T ss_pred cEEEecchhhccC-CCC-EEEEcCHHHHHHHHHhCcC----------------c------ee--CCCCCHHHH---HHHH
Confidence 9999999998832 556 9999988877665432100 0 00 123333332 4556
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHH
Q 037063 418 KGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLA 497 (588)
Q Consensus 418 ~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l 497 (588)
.+|+.+.. .+.+.++.+++++++.+.|.++ | ++++ + ..++++.+.+.+. .+...+.+.|
T Consensus 290 ~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-------g---~~~~-~----~~~~~~~~~~~~~----~~~~~l~~~l 348 (401)
T 1fc4_A 290 KVLEMVEA--GSELRDRLWANARQFREQMSAA-------G---FTLA-G----ADHAIIPVMLGDA----VVAQKFAREL 348 (401)
T ss_dssp HHHHHHHT--CHHHHHHHHHHHHHHHHHHHHT-------T---CCBC-C----SSSSEEEEEEECH----HHHHHHHHHH
T ss_pred HHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-------C---Cccc-C----CCCCEEEEEcCCh----HHHHHHHHHH
Confidence 77777654 3788899999999999999985 2 3333 2 3577888887531 2355677777
Q ss_pred HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 498 DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 498 ~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.++||.++.|..|.. ..+...+|++++.+++.+|++++++.|++++++
T Consensus 349 ~~~gi~v~~~~~~~~-----------------------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 396 (401)
T 1fc4_A 349 QKEGIYVTGFFYPVV-----------------------PKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQ 396 (401)
T ss_dssp HHTTEECCEECTTSS-----------------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHCCcEEeeecCCCC-----------------------CCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 778999998765420 012238999999999999999999999998765
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-25 Score=231.71 Aligned_cols=342 Identities=11% Similarity=0.056 Sum_probs=235.9
Q ss_pred CeeeecCCCCCCC----CHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHH
Q 037063 111 NYVCFDYIGHGLF----SYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRK 186 (588)
Q Consensus 111 ~~vyLD~a~~gl~----~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~ 186 (588)
+.-|+|.++..++ ++.+.+++.+.+.. ++++.+ .+...+|. .+..+++|+
T Consensus 42 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~--~~~~~~----------------------~~~~~~g~--~~~~~~l~~ 95 (399)
T 3tqx_A 42 EKEVLNFCANNYLGLADHPALIKTAQTVVEQ--YGFGMA----------------------SVRFICGT--QTIHKELEK 95 (399)
T ss_dssp TEEEEECSSCCTTSCTTCHHHHHHHHHHHHH--HCSCCC----------------------SCCCCCCC--BHHHHHHHH
T ss_pred CeeEEEeeccCcccccCCHHHHHHHHHHHHH--hCCCCC----------------------CcCccccC--chHHHHHHH
Confidence 4568888887543 46777777655533 222210 01111222 467789999
Q ss_pred HHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHH
Q 037063 187 RIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSG 266 (588)
Q Consensus 187 ~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e 266 (588)
.+++++|.+ . .++++++|+|+.+++.++ +++||+|++....|... ...++..|++++.++. +|++
T Consensus 96 ~la~~~~~~---~-~i~~~sGt~a~~~~l~~~-~~~gd~v~~~~~~~~~~----~~~~~~~g~~~~~~~~------~d~~ 160 (399)
T 3tqx_A 96 DISEFLGTD---D-TILYSSCFDANGGLFETL-LGPEDAIISDELNHASI----IDGIRLCKAQRYRYKN------NAMG 160 (399)
T ss_dssp HHHHHHTCS---E-EEEESCHHHHHHTTHHHH-CCTTCEEEEETTCCHHH----HHHHHSCCSEEEEECT------TCTT
T ss_pred HHHHHHCCC---c-EEEECchHHHHHHHHHHh-cCCCCEEEECCcccHHH----HHHHHHcCCceeEeCC------CCHH
Confidence 999999984 2 444455688999998888 89999977655554422 3455778999998875 3678
Q ss_pred HHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC-CCC------CCCCCCCCCc
Q 037063 267 KLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK-DMD------TLGLSLFKPD 338 (588)
Q Consensus 267 ~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~-d~~------~l~l~~~~~D 338 (588)
+|+++++.. .....++++|++++++|+||.++|+++| ++|+++|+++|+|+++..+. ... ..++ ...+|
T Consensus 161 ~l~~~l~~~--~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~d 237 (399)
T 3tqx_A 161 DLEAKLKEA--DEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGV-ADRVD 237 (399)
T ss_dssp HHHHHHHHH--HTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTC-TTCCS
T ss_pred HHHHHHHhh--hccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCC-CCCCc
Confidence 899988721 0111279999999999999999999999 99999999999999985441 111 1111 12479
Q ss_pred EEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHH
Q 037063 339 FLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECK 418 (588)
Q Consensus 339 ~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~ 418 (588)
+++.|+||++| ++.| |+++.++++++.+...... +...++.+.... +++..
T Consensus 238 i~~~s~sK~~~-g~~g-G~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~---~~~~~ 288 (399)
T 3tqx_A 238 ILTGTLGKALG-GASG-GYTSGHKEIIEWLRNRSRP------------------------YLFSNTVAPVIV---ATSLK 288 (399)
T ss_dssp EEEEESSSSSC-SSCC-EEEEECHHHHHHHHHHCHH------------------------HHSSCCCCHHHH---HHHHH
T ss_pred EEEecchHhcc-cCce-EEEEcCHHHHHHHHHhCcc------------------------eeccCCCcHHHH---HHHHH
Confidence 99999999888 3667 9999999887766432110 001223443332 45556
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHH
Q 037063 419 GLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLAD 498 (588)
Q Consensus 419 aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~ 498 (588)
+++.+. .+++++.++.+++++++.+.|.++ | ++++. ..++++.+.+.+. .+...+.+.|.
T Consensus 289 ~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-------g---~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~l~ 348 (399)
T 3tqx_A 289 VLELLK-TEGPQLRKQLQENSRYFRAGMEKL-------G---FQLVP-----GNHPIIPVMLGDA----QLATNMADHLL 348 (399)
T ss_dssp HHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH-------T---CCBCC-----CSSSEEEEEEECH----HHHHHHHHHHH
T ss_pred HHHHHh-hccHHHHHHHHHHHHHHHHHHHHc-------C---CCcCC-----CCCCEEEEEeCCH----HHHHHHHHHHH
Confidence 777664 357899999999999999999986 2 23332 3567888877641 23556777777
Q ss_pred hCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 499 RHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 499 ~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
++||.++++.+... ..+..+||+|++++++.||++++++.|++++++
T Consensus 349 ~~gi~v~~~~~~~~-----------------------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 395 (399)
T 3tqx_A 349 QEGIYVVGFSYPVV-----------------------PMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKK 395 (399)
T ss_dssp HTTEECCEECTTTS-----------------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HCCCEEeeeCCCCC-----------------------CCCCceEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence 78999987643210 023349999999999999999999999998865
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=229.55 Aligned_cols=353 Identities=10% Similarity=0.089 Sum_probs=236.8
Q ss_pred hHHHHHhhhccCCCCCCeeeecCCCCC-CCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 037063 95 QADRIRAQDYFHLSLNNYVCFDYIGHG-LFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQY 173 (588)
Q Consensus 95 ~~~~iR~~~f~~l~~~~~vyLD~a~~g-l~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 173 (588)
.+|... ++|.. .+.+.|..+... +.|+.+.+++.+.+.....+ |
T Consensus 21 ~~d~~~-~~~~~---~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~-------------------------------y 65 (391)
T 4dq6_A 21 KWSEME-KKYGT---NDLLPMWVADMDFKAAPCIIDSLKNRLEQEIYG-------------------------------Y 65 (391)
T ss_dssp HHHCHH-HHHSC---SCSEECCSSSCSSCCCHHHHHHHHHHHTTCCCC-------------------------------C
T ss_pred eeeecc-cccCC---CCceeccccCCCCCCCHHHHHHHHHHHhCCCCC-------------------------------C
Confidence 344444 34641 567788876655 44577888876555321110 1
Q ss_pred CCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEE
Q 037063 174 GSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSS 253 (588)
Q Consensus 174 g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~ 253 (588)
+....++.+++++.+++++|.+.+...|++|+|+|+|+.+++.++ +++||+|++....+... ...++..|++++.
T Consensus 66 ~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~~~~~~~----~~~~~~~g~~~~~ 140 (391)
T 4dq6_A 66 TTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINEL-TKANDKIMIQEPVYSPF----NSVVKNNNRELII 140 (391)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH-SCTTCEEEECSSCCTHH----HHHHHHTTCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCCHHH----HHHHHHcCCeEEe
Confidence 111267888999999999994322335999999999999999999 89999977554433312 3455678999999
Q ss_pred Eecc-CC--CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcCCC-
Q 037063 254 AEFA-WP--NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALGSK- 325 (588)
Q Consensus 254 v~~~-~~--~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~~~- 325 (588)
++++ +. ++.+|+++|+++++ + +++|++++++|+||.++|.++ | ++|+++|+++|+|+++....
T Consensus 141 ~~~~~~~~~~~~~d~~~l~~~l~--------~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~ 211 (391)
T 4dq6_A 141 SPLQKLENGNYIMDYEDIENKIK--------D-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIIL 211 (391)
T ss_dssp CCCEECTTSCEECCHHHHHHHCT--------T-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBC
T ss_pred eeeeecCCCceEeeHHHHHHHhh--------c-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeecccccccc
Confidence 9987 33 34589999999998 5 999999999999999977555 5 77999999999999976521
Q ss_pred C-CCCCCCCCC-----CCcEEEeccCccCCCCCCceEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccc
Q 037063 326 D-MDTLGLSLF-----KPDFLICSFYKIFGENPSGFGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESS 398 (588)
Q Consensus 326 d-~~~l~l~~~-----~~D~vv~S~~K~~G~~P~G~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~ 398 (588)
+ .....+... ...+++.|++|.+|.++.++|++++++ ++++.+......
T Consensus 212 ~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~------------------------ 267 (391)
T 4dq6_A 212 KKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTR------------------------ 267 (391)
T ss_dssp TTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHH------------------------
T ss_pred CCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHh------------------------
Confidence 0 011111111 133889999998884334589999887 666555432110
Q ss_pred cccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE-
Q 037063 399 QSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA- 477 (588)
Q Consensus 399 f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~- 477 (588)
+ ..++++.... +++..+++...+. ++++.++.+.+++++.+.|.+. .|+++++.+ .++++.
T Consensus 268 ~-~~~~~~~~~~---~a~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~l~~~--------~~~~~~~~~-----~~~~~~~ 329 (391)
T 4dq6_A 268 I-DIKRNNCFSL---VATEASYNNGESW-LESFLEYLESNIDFAIKYINEN--------MPKLKVRKP-----EGTYLLW 329 (391)
T ss_dssp T-TCCCCCHHHH---HHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHH--------CTTSEECCC-----SBSSEEE
T ss_pred h-cCCCCCHHHH---HHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHhh--------CCCCEecCC-----CccEEEE
Confidence 0 1123333332 3444555543332 6788889999999999999873 356777654 334444
Q ss_pred EEeecCCCCCcCHHHHHHHHHhC-CcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHH
Q 037063 478 FNVFDWNGTRIDPALVQKLADRH-NISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTY 556 (588)
Q Consensus 478 f~~~~~~g~~i~~~~v~~~l~~~-gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~ 556 (588)
+.+.... ++...+.+.|.++ ||.+++|..|.. .+..++|+|++ ++.|||+
T Consensus 330 ~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~------------------------~~~~~iRis~~--~~~~~i~ 380 (391)
T 4dq6_A 330 VDFSALG---LSDEELESILVQKGKVALNQGNSFGI------------------------GGSGYQRINLA--CPRSMLE 380 (391)
T ss_dssp EECGGGC---CCHHHHHHHHHHTTCEECEEGGGGCT------------------------TCTTEEEEECC--SCHHHHH
T ss_pred EEhhhcC---CCHHHHHHHHHHhCCEEeeCchhhCC------------------------CCCCeEEEEEc--CCHHHHH
Confidence 5555311 4577777766666 999999866531 12239999988 6899999
Q ss_pred HHHHHHHHhhh
Q 037063 557 RLWAFVSRFLD 567 (588)
Q Consensus 557 ~li~~l~~~l~ 567 (588)
++++.|+++++
T Consensus 381 ~~l~~l~~~l~ 391 (391)
T 4dq6_A 381 EALIRIKNAIN 391 (391)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998763
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=230.32 Aligned_cols=298 Identities=11% Similarity=0.067 Sum_probs=215.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
.+..+++++.+++++|++ .+++|+|+|+|+.+++.++ +++||+|++....|... ...++..|++++.++.
T Consensus 87 ~~~~~~l~~~la~~~g~~----~v~~~~ggt~a~~~~~~~~-~~~gd~V~~~~p~~~~~----~~~~~~~g~~~~~v~~- 156 (398)
T 3a2b_A 87 LDIHVELEEKLSAYVGKE----AAILFSTGFQSNLGPLSCL-MGRNDYILLDERDHASI----IDGSRLSFSKVIKYGH- 156 (398)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHS-SCTTCEEEEETTCCHHH----HHHHHHSSSEEEEECT-
T ss_pred cHHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEECCccCHHH----HHHHHHcCCceEEeCC-
Confidence 467889999999999973 4999999999999999999 89999977655544422 2345668999998875
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-CCCCCCCC-CC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS-KDMDTLGL-SL 334 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~-~d~~~l~l-~~ 334 (588)
+|.++|+++++. ....++++|++++++|+||.+.|+++| ++|+++|+++|+|+++..+ .+.....+ +.
T Consensus 157 -----~d~~~l~~~l~~----~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 227 (398)
T 3a2b_A 157 -----NNMEDLRAKLSR----LPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASH 227 (398)
T ss_dssp -----TCHHHHHHHHHT----SCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHH
T ss_pred -----CCHHHHHHHHHh----hccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhh
Confidence 478999999972 111178999999999999999999999 9999999999999998644 11101111 10
Q ss_pred ----CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 335 ----FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 335 ----~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
.++|+++.|+||++| |.| |++++++++++.+...... +...++++..+.
T Consensus 228 ~~~~~~~di~~~s~sK~~~--~~G-G~~~~~~~~~~~l~~~~~~------------------------~~~~~~~~~~~~ 280 (398)
T 3a2b_A 228 FGLNDDVDLIMGTFSKSLA--SLG-GFVAGDADVIDFLKHNARS------------------------VMFSASMTPASV 280 (398)
T ss_dssp HTCGGGCSEEEEESSSTTC--SSC-EEEEECHHHHHHHHHHCHH------------------------HHSSBCCCHHHH
T ss_pred cCCCcCCeEEEeccccccc--CCC-cEEEeCHHHHHHHHHhccc------------------------ceecCCCCHHHH
Confidence 137999999999999 778 9999998877765432100 001122333332
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCH
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDP 490 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~ 490 (588)
+++..+|+.++. ++++.++.+++++++.+.|.++ | ++++.+ .+.++.+.+.+ + .+.
T Consensus 281 ---a~~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-------g---~~~~~~-----~g~~~~~~~~~--~--~~~ 336 (398)
T 3a2b_A 281 ---ASTLKALEIIQN--EPEHIEKLWKNTDYAKAQLLDH-------G---FDLGAT-----ESPILPIFIRS--N--EKT 336 (398)
T ss_dssp ---HHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHT-------T---CCBCSC-----CSSEEEEECCC--H--HHH
T ss_pred ---HHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHHHhc-------C---CCcCCC-----CCCEEEEEcCC--H--HHH
Confidence 344567776543 3678888899999999999885 2 333332 36777777642 1 335
Q ss_pred HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 491 ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 491 ~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
..+.+.|.++||.++.|..|... .+.++||+|++.+++.||++++++.|++++++
T Consensus 337 ~~l~~~l~~~gi~v~~~~~~~~~-----------------------~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 337 FWVTKMLQDDGVFVNPVVSPAVP-----------------------AEESLIRFSLMATHTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp HHHHHHHHHTTEECEEECTTTSC-----------------------GGGCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcEEEeeCCCCCC-----------------------CCCceEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 56666666679999988655210 11238999999999999999999999998764
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-25 Score=240.27 Aligned_cols=305 Identities=12% Similarity=0.057 Sum_probs=229.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceE--EEecCHHHHHHHHHHhCCCCCC--------CeEEEc-CCCchhHHHHHHHHHHh
Q 037063 178 SELESKIRKRIMDFMNISEDDYTL--VFTANQSSAFKLLAESYPFYSN--------PRLLTV-YDHENEAAALMIESSKK 246 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~v--vft~g~T~al~lv~~s~~~~~g--------d~ll~~-~e~~s~~~~~~~~~a~~ 246 (588)
.++++++++++++++|++++...+ +||+|+|+|+.+++.++ .++| |+|++. ..|++ . ...++.
T Consensus 138 ~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~-~~~g~~~~g~~~d~Vi~~~~~~~~-~----~~~~~~ 211 (514)
T 3mad_A 138 AKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTY-RDWARATKGITAPEAVVPVSAHAA-F----DKAAQY 211 (514)
T ss_dssp HHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHH-HHHHHHHHCCSSCEEEEETTSCTH-H----HHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHH-HHHhhhhcCCCCCeEEEeCccchH-H----HHHHHH
Confidence 577788999999999997521236 99999999999999987 4554 786654 45543 2 345566
Q ss_pred cCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-
Q 037063 247 RGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS- 324 (588)
Q Consensus 247 ~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~- 324 (588)
.|++++.++++ +++.+|+++|+++|+ +++++|++++++|+||.+.|+++| ++|+++|+++|+|+++...
T Consensus 212 ~G~~v~~v~~~-~~~~~d~~~Le~~i~--------~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~ 282 (514)
T 3mad_A 212 FGIKLVRTPLD-ADYRADVAAMREAIT--------PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFI 282 (514)
T ss_dssp HTCEEEEECBC-TTSCBCHHHHHHHCC--------TTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred cCCeeEEeeeC-CCCCCCHHHHHHHhc--------cCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEeccccccc
Confidence 79999999998 588999999999998 689999999999999999999999 9999999999999996532
Q ss_pred --------CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCC----CCCCCceEeeecCCCcccccc
Q 037063 325 --------KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGS----TSSVSTIMGIEPSFSEIIELE 392 (588)
Q Consensus 325 --------~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~----~~g~~g~v~~~~~~~~~~~~~ 392 (588)
.....++....++|++++|+||+++. |.|+|+++++++.+...... +.+ +.. .
T Consensus 283 ~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~-----------~- 347 (514)
T 3mad_A 283 LPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYG-AKGTSVILYRRPDLLHYQYFIAADWPG--GLY-----------F- 347 (514)
T ss_dssp HHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCC-CSSCEEEEESSHHHHTTTCEEESSCTT--CSE-----------E-
T ss_pred chhHHhcCCCCCcccccCCCCcEEEECchhccCC-CCCeEEEEEeCHHHhccccccccccCC--Ccc-----------c-
Confidence 11224454556689999999997442 88999999999765443211 111 110 0
Q ss_pred cccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc
Q 037063 393 TLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR 472 (588)
Q Consensus 393 ~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r 472 (588)
.+...|+.+...+ +++..+++.+...|++++.+++..+++++.+.|.++ ++++++.+.
T Consensus 348 -----~~~~~gs~~~~~~---~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---------~g~~~~~~~----- 405 (514)
T 3mad_A 348 -----SPTFAGSRPGALS---ATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI---------PSLKILGDP----- 405 (514)
T ss_dssp -----ESSSCSSCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---------TTCEESSCC-----
T ss_pred -----CCccCCCCchHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC---------CCeEEeCCC-----
Confidence 0002455554443 566788888877788999999999999999999984 567877653
Q ss_pred ccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecC-CCCC
Q 037063 473 GPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALG-CLTN 551 (588)
Q Consensus 473 g~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg-~~~t 551 (588)
.+++.|...+ ++...+.+.|.++||.+ .|..+ . ..+|+++. ..++
T Consensus 406 ~~~~~~~~~~-----~~~~~l~~~L~~~Gi~v-~g~~~--------------------------~--~~~Ri~~~~~~~~ 451 (514)
T 3mad_A 406 LWVIAVASDE-----LNIYQVMEEMAGRGWRL-NGLHR--------------------------P--PAFHVALTLRHTE 451 (514)
T ss_dssp SSEEEEECSS-----SCHHHHHHHHHTTTCBC-EEETT--------------------------T--TEEEEECCGGGGS
T ss_pred eEEEEEeCCC-----CCHHHHHHHHHhcCCEe-ccCCC--------------------------C--CeEEEEEecCCCC
Confidence 3477776543 55778888888889987 44222 1 27999998 4456
Q ss_pred HHHHHHHHHHHHHhhhh
Q 037063 552 FEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 552 ~eDv~~li~~l~~~l~~ 568 (588)
.|||+++++.|++.+++
T Consensus 452 ~e~i~~~l~~L~~~l~~ 468 (514)
T 3mad_A 452 PGVVDRFLADLQDAVAQ 468 (514)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 79999999999998865
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-25 Score=235.01 Aligned_cols=316 Identities=9% Similarity=-0.083 Sum_probs=212.8
Q ss_pred HHHHHHHHHhC------CCCCCceEEEecCHHHHHHHHHHhCCC--CCCC--eEEE-cCCCchhHHHHHHHHHHhcCCEE
Q 037063 183 KIRKRIMDFMN------ISEDDYTLVFTANQSSAFKLLAESYPF--YSNP--RLLT-VYDHENEAAALMIESSKKRGARV 251 (588)
Q Consensus 183 ~~r~~ia~~lg------a~~~e~~vvft~g~T~al~lv~~s~~~--~~gd--~ll~-~~e~~s~~~~~~~~~a~~~G~~v 251 (588)
++|+.|+++++ ++++ .|+||+|+|+|+.+++.++ . ++|| +|++ ...|++ . ...++..|+++
T Consensus 86 ~lr~~la~~~~~~~g~~~~~~--~i~~t~g~t~al~~~~~~l-~~~~~gd~~~Vl~~~p~~~~-~----~~~~~~~g~~~ 157 (437)
T 3g0t_A 86 ELKQEASRFAKLFVNIDIPAR--ACVPTVGSMQGCFVSFLVA-NRTHKNREYGTLFIDPGFNL-N----KLQCRILGQKF 157 (437)
T ss_dssp HHHHHHHHHHHHHHCCCCCGG--GEEEESHHHHHHHHHHHHH-TTSCTTCSCCEEEEESCCHH-H----HHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhhCCCCCcc--cEEEeCCHHHHHHHHHHHH-hcCCCCCccEEEEeCCCcHh-H----HHHHHHcCCEE
Confidence 56666766665 4444 4999999999999999998 5 8999 8665 444443 2 34556779999
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcCC-CC
Q 037063 252 SSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALGS-KD 326 (588)
Q Consensus 252 ~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~~-~d 326 (588)
+.++++..+..+|+++|++++.. +++++|++++++|+||..+|.++ | ++|+++|+++|+|+++... .+
T Consensus 158 ~~v~~~~~~~~~d~~~l~~~l~~-------~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~ 230 (437)
T 3g0t_A 158 ESFDLFEYRGEKLREKLESYLQT-------GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFR 230 (437)
T ss_dssp EEEEGGGGCTTHHHHHHHHHHTT-------TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTT
T ss_pred EEEeecCCCCccCHHHHHHHHhc-------CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccC
Confidence 99999734446899999999931 67999999999999999999554 6 8899999999999997642 10
Q ss_pred -CCC--------CCCCC-CCCcEEEeccCccCCCCCCceEEEEEeCcchh-cccCCC---CCCCceEeeecCCCcccccc
Q 037063 327 -MDT--------LGLSL-FKPDFLICSFYKIFGENPSGFGCLFVKKSSAS-VLSGST---SSVSTIMGIEPSFSEIIELE 392 (588)
Q Consensus 327 -~~~--------l~l~~-~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~-~l~~~~---~g~~g~v~~~~~~~~~~~~~ 392 (588)
..+ ..+.. ...++++.|++|.+|.++.++|++++++++++ .+.... .++ +.. ...+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~ 301 (437)
T 3g0t_A 231 KDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRL-RFG--------EALSS 301 (437)
T ss_dssp SCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCS-BHH--------HHHHT
T ss_pred CCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhccccccccc-chh--------HHHHH
Confidence 111 12222 45779999999999842345999999988776 522111 110 000 00000
Q ss_pred cccccccccCCCCCccchhhHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCC--
Q 037063 393 TLDESSQSKFPESSISGVSSKLVECKGLDHADALG--LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKV-- 468 (588)
Q Consensus 393 ~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G--~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~-- 468 (588)
. .... ...+.+.... +++..+|+...... ++++.++++.+++++.+.|.++ +++++.+..
T Consensus 302 ~--~~~~-~~~~~~~~~~---~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~~~~ 365 (437)
T 3g0t_A 302 S--ALYA-LSSGATHSAQ---WGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN----------GFNIVYDKDGN 365 (437)
T ss_dssp T--HHHH-HHSSSCHHHH---HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT----------TEEESSCEETT
T ss_pred H--HHhh-hcCCCCHHHH---HHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCEEeccccCC
Confidence 0 0000 1223333332 44445565543211 7889999999999999999984 466661100
Q ss_pred -CCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecC
Q 037063 469 -MFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALG 547 (588)
Q Consensus 469 -~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg 547 (588)
+...+.++.+.+.+ ++...+.+.|.++||.+++|..|.. .....||+|++
T Consensus 366 ~~~~~~~~~~~~~~~-----~~~~~l~~~L~~~gi~v~~~~~~~~------------------------~~~~~iRis~~ 416 (437)
T 3g0t_A 366 EPLADGFYFTVGYKG-----MDSSKLIEKFVRYGMCAITLKTTGS------------------------KRNEAMRICTS 416 (437)
T ss_dssp EECCSSSEEEEEETT-----CCHHHHHHHHHHTTEECEESTTTTC------------------------CCTTCEEEECS
T ss_pred CCCceeEEEEEecCC-----CCHHHHHHHHHHcCeEEeeccccCC------------------------CCCCEEEEEEe
Confidence 00235566667653 5677888888888999998866631 11127999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhh
Q 037063 548 CLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 548 ~~~t~eDv~~li~~l~~~l~~ 568 (588)
. .+.+||+++++.|++++++
T Consensus 417 ~-~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 417 L-LPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp S-SCGGGHHHHHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHHHhc
Confidence 4 4999999999999988753
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-25 Score=235.35 Aligned_cols=299 Identities=11% Similarity=0.071 Sum_probs=209.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhC-CCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY-PFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~-~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.+..+++|+.|++++|.+ +.|+||+|++ ++..+...+ .+.+||+|++. ..|++ .. ..++..|++++.++
T Consensus 90 ~~~~~~l~~~la~~~~~~---~~i~~~sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~-~~----~~~~~~g~~~~~v~ 160 (401)
T 2bwn_A 90 TAYHRRLEAEIAGLHQKE---AALVFSSAYN-ANDATLSTLRVLFPGLIIYSDSLNHAS-MI----EGIKRNAGPKRIFR 160 (401)
T ss_dssp BHHHHHHHHHHHHHTTCS---EEEEESCHHH-HHHHHHHHHHHHSTTCEEEEETTCCHH-HH----HHHHHSCCCEEEEC
T ss_pred hHHHHHHHHHHHHHhCCC---cEEEECCcHH-HHHHHHHHHhcCCCCCEEEECchhhHH-HH----HHHHHcCCeEEEEc
Confidence 456789999999999973 4588877776 555554443 13589997654 45554 22 23456799999998
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC-CCCC----
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK-DMDT---- 329 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~-d~~~---- 329 (588)
.+ +.++|++++.. ...+++++|++++++|+||.+.|+++| ++|+++|+++|+|+++..+. ....
T Consensus 161 ~~------d~~~le~~l~~----~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~ 230 (401)
T 2bwn_A 161 HN------DVAHLRELIAA----DDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA 230 (401)
T ss_dssp TT------CHHHHHHHHHH----SCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH
T ss_pred CC------CHHHHHHHHHh----hccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceee
Confidence 64 67889988862 111478999999999999999999999 99999999999999988541 0011
Q ss_pred --CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCc
Q 037063 330 --LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407 (588)
Q Consensus 330 --l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~ 407 (588)
.++. .++|+++.|++|.+|. .| |+++.++++++.+.....+ + .| ..|+++
T Consensus 231 ~~~~~~-~~~~i~~~s~sK~~~~--~G-G~~~~~~~~~~~l~~~~~~----------------~------~~-~~~~~~- 282 (401)
T 2bwn_A 231 ERDGLM-HRIDIFNGTLAKAYGV--FG-GYIAASARMVDAVRSYAPG----------------F------IF-STSLPP- 282 (401)
T ss_dssp HHHTCG-GGCSEEEEESSSTTCS--CC-EEEEECHHHHHHHHHHCHH----------------H------HT-SBCCCH-
T ss_pred eccCcc-ccCcEEEeechhhccC--CC-CEEecCHHHHHHHHHhCcC----------------c------ee-cCCCCH-
Confidence 1110 1368999999999993 46 8888887766544321100 0 22 344544
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTR 487 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~ 487 (588)
... +++.++++++.+.|++++.++.+.+++++.+.|.++ +++++.+ +++++.|.+.+ +
T Consensus 283 ~~~---~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~-----~~~~~~~~~~~--~-- 340 (401)
T 2bwn_A 283 AIA---AGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL----------GMPIIDH-----GSHIVPVVIGD--P-- 340 (401)
T ss_dssp HHH---HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH----------TCCBCCC-----SSSCEEEECCC--H--
T ss_pred HHH---HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC----------CCcccCC-----CCCeEEEEeCC--h--
Confidence 222 566788888877677899999999999999999885 2344433 35688887753 1
Q ss_pred cCHHHHHHHH-HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 488 IDPALVQKLA-DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 488 i~~~~v~~~l-~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
.+...+.+.| +++||.++.+.... . ..|...||+|++.+++.+||+++++.|++++
T Consensus 341 ~~~~~~~~~L~~~~gi~v~~~~~~~----------------~-------~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~ 397 (401)
T 2bwn_A 341 VHTKAVSDMLLSDYGVYVQPINFPT----------------V-------PRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 397 (401)
T ss_dssp HHHHHHHHHHHHHHCEECCEECTTT----------------S-------CTTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCEEEeecCCCC----------------C-------CCCCceEEEEeeCCCCHHHHHHHHHHHHHHH
Confidence 3355666655 58899998763210 0 0122389999999999999999999999886
Q ss_pred hh
Q 037063 567 DA 568 (588)
Q Consensus 567 ~~ 568 (588)
+.
T Consensus 398 ~~ 399 (401)
T 2bwn_A 398 AR 399 (401)
T ss_dssp --
T ss_pred Hh
Confidence 53
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=231.89 Aligned_cols=309 Identities=14% Similarity=0.086 Sum_probs=200.6
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCC
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNL 261 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~ 261 (588)
++|+++++++|++ +.|++++| |+|+.+++.++ +++||+|+ ....|++ ....+..+++..|++++.++.
T Consensus 2 ~l~~~la~~~g~~---~~i~~~sG-~~a~~~~~~~~-~~~g~~v~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~----- 70 (331)
T 1pff_A 2 ALEGKIAKLEHAE---ACAATASG-MGAIAASVWTF-LKAGDHLISDDCLYGC-THALFEHQLRKFGVEVDFIDM----- 70 (331)
T ss_dssp HHHHHHHHHHTCS---EEEEESSH-HHHHHHHHHHH-CCTTCEEEEESCCCHH-HHHHHHTHHHHTTCEEEEECT-----
T ss_pred hHHHHHHHHhCCC---eEEEeCCh-HHHHHHHHHHh-cCCCCEEEEcCCCcch-HHHHHHHHHHhcCCEEEEeCC-----
Confidence 6889999999985 23555554 89999999988 88999965 5556665 333333445678999999875
Q ss_pred ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH-cCcEEEEeCCCcCCCCCCCCCCCCCCCcE
Q 037063 262 RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE-KGWHVLLDATALGSKDMDTLGLSLFKPDF 339 (588)
Q Consensus 262 ~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~-~g~~vvvDaa~~~~~d~~~l~l~~~~~D~ 339 (588)
+|.++++++++ +++++|++++++|+||..+|+++| ++|++ +|+++++|+++..+....++ .+++|+
T Consensus 71 -~d~~~l~~~i~--------~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~---~~~~d~ 138 (331)
T 1pff_A 71 -AVPGNIEKHLK--------PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL---DLGVDI 138 (331)
T ss_dssp -TSTTHHHHTCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG---GGTCSE
T ss_pred -CCHHHHHHhhc--------CCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh---hcCCcE
Confidence 36788988887 689999999999999999999999 99999 99999999998775211122 234899
Q ss_pred EEeccCccCCCCCCc--eEEEEEeC-cchhcccCCCCC-CCceEeeecCCCcccccccccccccccCCCCCccchhhHHH
Q 037063 340 LICSFYKIFGENPSG--FGCLFVKK-SSASVLSGSTSS-VSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLV 415 (588)
Q Consensus 340 vv~S~~K~~G~~P~G--~G~L~v~~-~~~~~l~~~~~g-~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~a 415 (588)
++.|+||++|. |.+ +|++++++ ++++.+.+...+ + + ++.+.... ++
T Consensus 139 ~~~s~~K~~~~-~~~r~~G~~~~~~~~~~~~l~~~~~~~~-~-------------------------~~~~~~~~---~~ 188 (331)
T 1pff_A 139 VVHSATKYING-HTDVVAGLVCSRADIIAKVKSQGIKDIT-G-------------------------AIISPHDA---WL 188 (331)
T ss_dssp EEEETTTTTSS-SSSCCCEEEEECHHHHHHHHHTCCCCCC-C-------------------------CCCCHHHH---HH
T ss_pred EEEECccccCC-CCCceEEEEEeCcHHHHHHHHHHHHhhc-C-------------------------CCCCHHHH---HH
Confidence 99999998874 655 79999998 887777654432 1 1 01111111 22
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHH--HHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHH
Q 037063 416 ECKGLDHADALGLILISNRARYLINWLANA--LMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALV 493 (588)
Q Consensus 416 l~~aL~~l~~~G~~~i~~r~~~L~~~l~~~--L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v 493 (588)
+..+++.+... ++...+....+.+++.+. +.+..++.- ...++++++.+.. ..++++++|.+.+ .+.+
T Consensus 189 ~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~l~~~~~~~l-~~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~ 258 (331)
T 1pff_A 189 ITRGTLTLDMR-VKRAAENAQKVAEFLHEHKAVKKVYYPGL-PDHPGHEIAKKQM-KMFGSMIAFDVDG-------LEKA 258 (331)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHCTTCCCEECTTS-TTSTTHHHHHHHC-SSCCSEEEEECSS-------HHHH
T ss_pred HHcCcchHHHH-HHHHHHHHHHHHHHHHcCCCeeEEECCCC-CCCccHHHHHhhC-CCCceEEEEEECC-------HHHH
Confidence 23455543321 344444444444444332 000000000 0122333333221 1357899998753 6778
Q ss_pred HHHHHhCCcEeccc---------cccCcccccchHHHHHHHHhhhcCCCCCcCC--ccEEEEecCCCCCHHHHHHHHHHH
Q 037063 494 QKLADRHNISLSCG---------FLQNIFFSGEYEQERVRVLETRSGTNETRSG--VSVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 494 ~~~l~~~gI~v~~G---------~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g--~~~vRvSlg~~~t~eDv~~li~~l 562 (588)
.+++++.||.++.+ ++|......... ...+.. .| .+.||+|+|.++|.+||++++++|
T Consensus 259 ~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~---~~~~~~--------~g~~~~~iRis~~~~~t~~~i~~l~~~l 327 (331)
T 1pff_A 259 KKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVP---KEEREA--------AGLTDNLIRLSVGCENVQDIIDDLKQAL 327 (331)
T ss_dssp HHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSC---HHHHHH--------TTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHhCCCceeccCCCCcceeeecchhhcccccC---HHHHHh--------cCCCCCeEEEEEecCCHHHHHHHHHHHH
Confidence 89999999977654 355321100000 000111 22 249999999999999999999998
Q ss_pred HHh
Q 037063 563 SRF 565 (588)
Q Consensus 563 ~~~ 565 (588)
+++
T Consensus 328 ~~~ 330 (331)
T 1pff_A 328 DLV 330 (331)
T ss_dssp HTC
T ss_pred HHh
Confidence 764
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=228.10 Aligned_cols=316 Identities=12% Similarity=0.046 Sum_probs=215.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+++|+.+++++|++ .++||+|+|+|+.+++.++.+++||+|+ ....|++ .. ..++..|++++.+++
T Consensus 35 ~~~~~~l~~~la~~~~~~----~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~-~~----~~~~~~g~~~~~~~~ 105 (373)
T 3frk_A 35 GDEDKKFEQEFADYCNVN----YCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIA-TA----LAVSYTGAKPIFVEP 105 (373)
T ss_dssp SHHHHHHHHHHHHHHTSS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTH-HH----HHHHHHSCEEEEECE
T ss_pred CchHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHH-HH----HHHHHcCCEEEEEec
Confidence 356789999999999984 3999999999999999998889999965 5666765 22 334567999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC--CCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK--DMDTLGLS 333 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~--d~~~l~l~ 333 (588)
+..++.+|+++|+++++ +++++|+ ++|+||...|+++| ++|+++|+++|+|+++..+. +...++.
T Consensus 106 ~~~~~~~d~~~l~~~l~--------~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~- 173 (373)
T 3frk_A 106 DIRTYNIDPSLIESAIT--------EKTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGS- 173 (373)
T ss_dssp ETTTTEECGGGTGGGCC--------TTEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTS-
T ss_pred cccccCcCHHHHHHhcC--------CCCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccc-
Confidence 86678899999998887 6788888 56789999999999 99999999999999988762 2222221
Q ss_pred CCCCcEEEeccC--ccCCCCC-CceEEEEEeCc-chhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 334 LFKPDFLICSFY--KIFGENP-SGFGCLFVKKS-SASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 334 ~~~~D~vv~S~~--K~~G~~P-~G~G~L~v~~~-~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
-+|++++|++ |++| | ...|+++.+++ +.+.+++...++ .... +. .. ..|. ++..
T Consensus 174 --~~d~~~~S~~~~K~l~--~~g~gg~~~~~~~~~~~~~~~~~~~g-~~~~----------~~-----~~-~~g~-~~~~ 231 (373)
T 3frk_A 174 --LGDAAGFSFYPAKNLG--SLGDGGAVVTNDKDLAEKIKALSNYG-SEKK----------YH-----HI-YKGF-NSRL 231 (373)
T ss_dssp --SSSEEEEECCTTSSSC--CSSSCEEEEESCHHHHHHHHHHHBTT-CSBT----------TB-----CC-SCCC-BCCC
T ss_pred --cccEEEEeCcCCCccC--ccceeEEEEeCCHHHHHHHHHHHhcC-cccC----------Cc-----cc-cccc-cCCC
Confidence 1699999966 9888 5 34566666654 555555443321 1100 00 00 2231 1111
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcC
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRID 489 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~ 489 (588)
..+.+++......+++.+.++.+.+++++.+.|.++ + +++..... .....++.|.+.. .+
T Consensus 232 ----~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~-~~~~~~~~-~~~~~~~~~~~~~-----~~ 291 (373)
T 3frk_A 232 ----DELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNP---------N-VIIPVEAD-YAKHVWYTFVIRS-----EK 291 (373)
T ss_dssp ----CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCT---------T-EECCCCCT-TEECCCSSEEEEE-----SS
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------c-eEeccCCC-CCceeeEEEEEEe-----CC
Confidence 233455555544567889999999999999998874 4 55533211 1223334455443 24
Q ss_pred HHHHHHHHHhCCcEecccc----ccCcccccc-----hHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHH
Q 037063 490 PALVQKLADRHNISLSCGF----LQNIFFSGE-----YEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 490 ~~~v~~~l~~~gI~v~~G~----~c~~~~~~~-----~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~ 560 (588)
.+.+.+.|.++||.++.+. +|.+.+... .. .....+.. ..||+|++.++|.|||+++++
T Consensus 292 ~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~lrl~~~~~~t~~di~~~~~ 359 (373)
T 3frk_A 292 RDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNF-PIAEKIAN-----------EILSIPIWYGMKNEEIEYVID 359 (373)
T ss_dssp HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSS-HHHHHHHH-----------HEEEECCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCC-HHHHHHHh-----------CEEEccCCCCCCHHHHHHHHH
Confidence 7788888988999999664 343322110 00 00111111 289999999999999999999
Q ss_pred HHHHhhhh
Q 037063 561 FVSRFLDA 568 (588)
Q Consensus 561 ~l~~~l~~ 568 (588)
.|+++.++
T Consensus 360 ~l~~~~~~ 367 (373)
T 3frk_A 360 KINAWKLE 367 (373)
T ss_dssp HHHTCC--
T ss_pred HHHHHhhh
Confidence 99987654
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=228.11 Aligned_cols=298 Identities=13% Similarity=0.111 Sum_probs=205.6
Q ss_pred HHHHHHHHHh----CCCCCCce-EEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 183 KIRKRIMDFM----NISEDDYT-LVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 183 ~~r~~ia~~l----ga~~~e~~-vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++|+.+++++ |.+.+... |++|+|+|+|+.+++.++ +++||+|+ ....|++ . ...++..|++++.++.
T Consensus 67 ~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~~~~~~-~----~~~~~~~g~~~~~v~~ 140 (389)
T 1gd9_A 67 ELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAF-LKDGEEVLIPTPAFVS-Y----APAVILAGGKPVEVPT 140 (389)
T ss_dssp HHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTT-CCTTCEEEEEESCCTT-H----HHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchh-H----HHHHHHCCCEEEEecc
Confidence 5666666665 85433345 999999999999999998 88999966 4555654 2 2345667999999998
Q ss_pred cCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcCCC-C---C
Q 037063 257 AWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALGSK-D---M 327 (588)
Q Consensus 257 ~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~~-d---~ 327 (588)
+.. ++.+|+++|+++++ +++++|++++++|+||..+| +++| ++|+++|+++|+|+++.... + .
T Consensus 141 ~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~ 212 (389)
T 1gd9_A 141 YEEDEFRLNVDELKKYVT--------DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARH 212 (389)
T ss_dssp CGGGTTCCCHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCC
T ss_pred CCccCCCCCHHHHHHhcC--------cCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCC
Confidence 732 35689999999987 57899999999999999997 6667 89999999999999976531 1 0
Q ss_pred CC-CCCC-CCCCcEEEeccCccCCCCCCc--eEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCC
Q 037063 328 DT-LGLS-LFKPDFLICSFYKIFGENPSG--FGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP 403 (588)
Q Consensus 328 ~~-l~l~-~~~~D~vv~S~~K~~G~~P~G--~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G 403 (588)
.+ ..+. ..+.|+++.|+||.+| +.| +|++++++++++.+.....+. .+
T Consensus 213 ~~~~~~~~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~~~~--------------------------~~ 264 (389)
T 1gd9_A 213 YSIASLDGMFERTITVNGFSKTFA--MTGWRLGFVAAPSWIIERMVKFQMYN--------------------------AT 264 (389)
T ss_dssp CCGGGSTTCGGGEEEEEESTTTTT--CGGGCCEEEECCHHHHHHHHHHHTTT--------------------------TC
T ss_pred CCHhhccCCCCCEEEEecChhhcC--CcccceEEEEECHHHHHHHHHHHhhh--------------------------cc
Confidence 01 1121 1347899999999998 446 799999988777665322110 01
Q ss_pred CCCccchhhHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeec
Q 037063 404 ESSISGVSSKLVECKGLDHADA-LGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFD 482 (588)
Q Consensus 404 T~~~~~~~~~~al~~aL~~l~~-~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~ 482 (588)
+.+.... +++..+|+.... ..++++.++.+.+++++.+.|.++ +++++.+ ..+.++.+.+..
T Consensus 265 ~~~~~~~---~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~----~~~~~~~~~~~~ 327 (389)
T 1gd9_A 265 CPVTFIQ---YAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM----------GLPTVKP----KGAFYIFPRIRD 327 (389)
T ss_dssp SCCHHHH---HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------TCCCCCC----CBTTEECCBCGG
T ss_pred CCCHHHH---HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc----------CCeecCC----CeeeEEEEeccC
Confidence 1221111 334455554322 136778888999999999999884 2333333 123334445542
Q ss_pred CCCCCcCHHHHHHHHH-hCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHH
Q 037063 483 WNGTRIDPALVQKLAD-RHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAF 561 (588)
Q Consensus 483 ~~g~~i~~~~v~~~l~-~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~ 561 (588)
. | .+...+.+.|. ++||.++.|..|.. .+.++||+|++. +.+|++++++.
T Consensus 328 ~-~--~~~~~~~~~l~~~~gi~v~~g~~~~~------------------------~~~~~iRi~~~~--~~~~i~~~l~~ 378 (389)
T 1gd9_A 328 T-G--LTSKKFSELMLKEARVAVVPGSAFGK------------------------AGEGYVRISYAT--AYEKLEEAMDR 378 (389)
T ss_dssp G-T--CCHHHHHHHHHHHTCEECEEGGGGCG------------------------GGTTBEEEECCS--CHHHHHHHHHH
T ss_pred C-C--CCHHHHHHHHHHhCCEEEeCchhhCC------------------------CCCCeEEEEecC--CHHHHHHHHHH
Confidence 1 1 35666666664 89999998865521 112289999885 89999999999
Q ss_pred HHHhhhh
Q 037063 562 VSRFLDA 568 (588)
Q Consensus 562 l~~~l~~ 568 (588)
|.+++++
T Consensus 379 l~~~~~~ 385 (389)
T 1gd9_A 379 MERVLKE 385 (389)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988764
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=227.56 Aligned_cols=284 Identities=12% Similarity=0.094 Sum_probs=202.3
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
.++|+.|++++|+++++ |+||+|+|+|+.+++.++ +++||+|++. ..|++ . ...++..|++++.++.+ ++
T Consensus 68 ~~lr~~la~~~g~~~~~--i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~~~~-~----~~~~~~~g~~~~~v~~~-~~ 138 (360)
T 3hdo_A 68 QKLREVAGELYGFDPSW--IIMANGSDEVLNNLIRAF-AAEGEEIGYVHPSYSY-Y----GTLAEVQGARVRTFGLT-GD 138 (360)
T ss_dssp HHHHHHHHHHHTCCGGG--EEEESSHHHHHHHHHHHH-CCTTCEEEEESSSCTH-H----HHHHHHHTCEEEEECBC-TT
T ss_pred HHHHHHHHHHhCcCcce--EEEcCCHHHHHHHHHHHH-hCCCCEEEEcCCChHH-H----HHHHHHCCCEEEEeeCC-CC
Confidence 58999999999987665 999999999999999999 8999997654 44443 2 34556779999999987 44
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCC-CCCCCc
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGL-SLFKPD 338 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l-~~~~~D 338 (588)
+.+ +++++. .+++++++++++|+||.++|+++| ++|+++|+++|+|+++..-..-..+.+ .....+
T Consensus 139 ~~~--~~l~~~----------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 206 (360)
T 3hdo_A 139 FRI--AGFPER----------YEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENV 206 (360)
T ss_dssp SSB--TTCCSS----------BCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSE
T ss_pred CCH--HHHHhh----------cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCE
Confidence 444 333211 235699999999999999999999 999999999999999763100011111 123356
Q ss_pred EEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHH
Q 037063 339 FLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECK 418 (588)
Q Consensus 339 ~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~ 418 (588)
+++.|++|.+|.+..++|++++++++++.+...... .+.+.... +++..
T Consensus 207 i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~---~a~~~ 255 (360)
T 3hdo_A 207 VVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRDH----------------------------YNLDRLAQ---AACVA 255 (360)
T ss_dssp EEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSCS----------------------------CCSCHHHH---HHHHH
T ss_pred EEEecchHhhcCCccceeeEeeCHHHHHHHHHhCCC----------------------------CCCCHHHH---HHHHH
Confidence 889999999884345689999988777655432211 01222221 34445
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHH
Q 037063 419 GLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLAD 498 (588)
Q Consensus 419 aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~ 498 (588)
+|+... .++++.++.+++++++.+.|.++ +++++. ..+.++.+.+.+ .+...+.+.|.
T Consensus 256 ~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~----------~~~~~~-----~~~~~~~~~~~~-----~~~~~l~~~l~ 313 (360)
T 3hdo_A 256 ALRDQA--YLSECCRRIRETREWFTTELRSI----------GYDVIP-----SQGNYLFATPPD-----RDGKRVYDGLY 313 (360)
T ss_dssp HHHCHH--HHHHHHHHHHHHHHHHHHHHHHT----------TCEECC-----CSSSEEEEECTT-----CCHHHHHHHHH
T ss_pred HhcCHH--HHHHHHHHHHHHHHHHHHHHHHC----------CCEEcC-----CCccEEEEECCC-----CCHHHHHHHHH
Confidence 555422 25788889999999999999884 345543 346677776654 45788888888
Q ss_pred hCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 499 RHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 499 ~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
++||.++.|... .+.++||+|++ +.+|+++++++|+++.+.
T Consensus 314 ~~gi~v~~~~~~--------------------------~~~~~iRis~~---~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 314 ARKVLVRHFSDP--------------------------LLAHGMRISIG---TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp HTTEECBCCCST--------------------------TTTTSEEEECC---CHHHHHHHHHHHHHHHC-
T ss_pred HCCEEEEECCCC--------------------------CCCCEEEEEcC---CHHHHHHHHHHHHHHhcc
Confidence 999999875320 11238999987 899999999999987654
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=227.98 Aligned_cols=300 Identities=13% Similarity=0.112 Sum_probs=203.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++.+.+.+.+.+.+|++.+...|++|+|+|+|+.+++.++ +++||+|++ ...|++ . ...++..|++++.++.
T Consensus 70 ~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~~~~~~-~----~~~~~~~g~~~~~v~~ 143 (388)
T 1j32_A 70 PRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAM-IEPGDEVIIPAPFWVS-Y----PEMVKLAEGTPVILPT 143 (388)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEESSCCTH-H----HHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCChh-H----HHHHHHcCCEEEEecC
Confidence 34445555555555575433345999999999999999999 899999664 455553 2 2345678999999998
Q ss_pred cCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcCCC------
Q 037063 257 AWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALGSK------ 325 (588)
Q Consensus 257 ~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~~------ 325 (588)
+.. ++.+|+++|+++++ +++++|++++++|+||.++| +++| ++|+++|+++|+|+++....
T Consensus 144 ~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~ 215 (388)
T 1j32_A 144 TVETQFKVSPEQIRQAIT--------PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQH 215 (388)
T ss_dssp CGGGTTCCCHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC
T ss_pred CcccCCCCCHHHHHHhcC--------cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC
Confidence 632 45689999999997 67999999999999999988 6667 88999999999999965421
Q ss_pred -CCCCCCCCCCCCcEEEeccCccCCCCCCc--eEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccC
Q 037063 326 -DMDTLGLSLFKPDFLICSFYKIFGENPSG--FGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKF 402 (588)
Q Consensus 326 -d~~~l~l~~~~~D~vv~S~~K~~G~~P~G--~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~ 402 (588)
.+..++.+....|+++.|+||++| +.| +|++++++++++.+.....++ ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~~~~-------------------------~~ 268 (388)
T 1j32_A 216 LSIGAASPEAYERSVVCSGFAKTYA--MTGWRVGFLAGPVPLVKAATKIQGHS-------------------------TS 268 (388)
T ss_dssp CCGGGSCHHHHHTEEEEEESTTTTT--CTTTCCEEEECCHHHHHHHHHHHHTT-------------------------TC
T ss_pred CCHHHccccccCCEEEEeechhccC--CcccceEEEEeCHHHHHHHHHHHhhc-------------------------cc
Confidence 011111001347899999999998 446 999999988776654322110 01
Q ss_pred CCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE-EEee
Q 037063 403 PESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA-FNVF 481 (588)
Q Consensus 403 GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~-f~~~ 481 (588)
+++.+.. .++..+|+...+ .++++.++.+.+++++.+.|.++ ++++++.| .++++. +.+.
T Consensus 269 ~~~~~~~----~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~---------~g~~~~~~-----~~~~~~~~~~~ 329 (388)
T 1j32_A 269 NVCTFAQ----YGAIAAYENSQD-CVQEMLAAFAERRRYMLDALNAM---------PGLECPKP-----DGAFYMFPSIA 329 (388)
T ss_dssp SCCHHHH----HHHHHHHHSCSH-HHHHHHHHHHHHHHHHHHHHHTC---------TTCBCCCC-----CBTTEECCBCG
T ss_pred CCCHHHH----HHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHHhhC---------CCCcccCC-----CeeEEEEEecC
Confidence 1111111 222234432111 25778888899999999999874 45555543 233332 3333
Q ss_pred cCCCCCcCHHHHHHHH-HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHH
Q 037063 482 DWNGTRIDPALVQKLA-DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 482 ~~~g~~i~~~~v~~~l-~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~ 560 (588)
.. | .+...+.+.| +++||.++.|..|. ..++||+|++ ++.||++++++
T Consensus 330 ~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~--------------------------~~~~iRis~~--~~~~~i~~~~~ 378 (388)
T 1j32_A 330 KT-G--RSSLDFCSELLDQHQVATVPGAAFG--------------------------ADDCIRLSYA--TDLDTIKRGME 378 (388)
T ss_dssp GG-T--CCHHHHHHHHHHHHCEECEEGGGGT--------------------------CTTBEEEECC--SCHHHHHHHHH
T ss_pred CC-C--CCHHHHHHHHHHhCCEEEeChhhhC--------------------------CCCcEEEEec--CCHHHHHHHHH
Confidence 21 1 3466666555 45899999885441 0128999987 69999999999
Q ss_pred HHHHhhhh
Q 037063 561 FVSRFLDA 568 (588)
Q Consensus 561 ~l~~~l~~ 568 (588)
.|++++++
T Consensus 379 ~l~~~l~~ 386 (388)
T 1j32_A 379 RLEKFLHG 386 (388)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-24 Score=224.19 Aligned_cols=335 Identities=10% Similarity=0.061 Sum_probs=230.6
Q ss_pred CCeeeecCCCCC----CCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHH
Q 037063 110 NNYVCFDYIGHG----LFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIR 185 (588)
Q Consensus 110 ~~~vyLD~a~~g----l~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r 185 (588)
++..|+|.++.. ..++.+.+++.+.+.....+++ .+...+|. .....++|
T Consensus 37 ~g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~------------------------~~~~~~g~--~~~~~~l~ 90 (384)
T 1bs0_A 37 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSG------------------------GSGHVSGY--SVVHQALE 90 (384)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCC------------------------SBTTTTCC--CHHHHHHH
T ss_pred CCceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCC------------------------CcCcccCC--hHHHHHHH
Confidence 356789988844 3567788877655532111111 00111111 35678999
Q ss_pred HHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCH
Q 037063 186 KRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHS 265 (588)
Q Consensus 186 ~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~ 265 (588)
+.|++++|++ + .++++++|+|+.+++.++ .++||+|++...+|... ...++..|++++.+|. +|.
T Consensus 91 ~~la~~~g~~--~--~i~~~sGt~a~~~~~~~~-~~~gd~v~~~~~~~~~~----~~~~~~~g~~~~~~~~------~d~ 155 (384)
T 1bs0_A 91 EELAEWLGYS--R--ALLFISGFAANQAVIAAM-MAKEDRIAADRLSHASL----LEAASLSPSQLRRFAH------NDV 155 (384)
T ss_dssp HHHHHHHTCS--E--EEEESCHHHHHHHHHHHH-CCTTCEEEEETTCCHHH----HHHHHTSSSEEEEECT------TCH
T ss_pred HHHHHHhCCC--c--EEEeCCcHHHHHHHHHHh-CCCCcEEEEcccccHHH----HHHHHHcCCCEEEeCC------CCH
Confidence 9999999984 2 666666699999999998 88999977665555422 2345668999998874 478
Q ss_pred HHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC-C--C----CCCCCCCCCC
Q 037063 266 GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK-D--M----DTLGLSLFKP 337 (588)
Q Consensus 266 e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~-d--~----~~l~l~~~~~ 337 (588)
++|+++|++ . .+++++|++++++|+||..+|+++| ++|+++|+++|+|+++..+. . . ..++ ..+
T Consensus 156 ~~l~~~l~~----~-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~---~~~ 227 (384)
T 1bs0_A 156 THLARLLAS----P-CPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQK---VKP 227 (384)
T ss_dssp HHHHHHHHS----C-CSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTT---CCC
T ss_pred HHHHHHHHh----c-CCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcC---CCC
Confidence 999999972 1 1247999999999999999999999 99999999999999976542 1 0 1122 248
Q ss_pred cEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHH
Q 037063 338 DFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVEC 417 (588)
Q Consensus 338 D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~ 417 (588)
|+++.|+||++| |.| |++++++++++.+...... . . ..++.+.... +++.
T Consensus 228 di~~~s~sK~~~--~~G-G~~~~~~~~~~~l~~~~~~---~-------------------~--~~~~~~~~~~---~~~~ 277 (384)
T 1bs0_A 228 ELLVVTFGKGFG--VSG-AAVLCSSTVADYLLQFARH---L-------------------I--YSTSMPPAQA---QALR 277 (384)
T ss_dssp SEEEEESSSTTS--SCC-EEEEECHHHHHHHHHHCHH---H-------------------H--SSBCCCHHHH---HHHH
T ss_pred cEEEeeccchhh--ccC-cEEEeCHHHHHHHHHhchh---h-------------------h--cCCCCCHHHH---HHHH
Confidence 999999999999 677 9999998887665432100 0 0 0112233322 4555
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHH
Q 037063 418 KGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLA 497 (588)
Q Consensus 418 ~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l 497 (588)
++|+.+.+..++.+.++.+.+++++.+.|.++ +++++. ..++++.+.+.+. .+...+.+.|
T Consensus 278 ~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~-----~~~~~~~~~~~~~----~~~~~l~~~l 338 (384)
T 1bs0_A 278 ASLAVIRSDEGDARREKLAALITRFRAGVQDL----------PFTLAD-----SCSAIQPLIVGDN----SRALQLAEKL 338 (384)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS----------SCEECS-----CCSSBCCEEEESH----HHHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhc----------CCcccC-----CCCCEEEEEeCCH----HHHHHHHHHH
Confidence 67777763124788899999999999999885 245542 2456666766521 3356677777
Q ss_pred HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 498 DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 498 ~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
.++||.++.|..... ..+...||+|++.+++.+|++++++.|+++
T Consensus 339 ~~~gi~v~~~~~~~~-----------------------~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 339 RQQGCWVTAIRPPTV-----------------------PAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp HHTTEECCEECTTSS-----------------------CTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred HHCCcEEEeecCCCC-----------------------CCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 778999988743210 012248999999999999999999998864
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-24 Score=227.26 Aligned_cols=306 Identities=12% Similarity=0.083 Sum_probs=205.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+++|++||+++|++ + +++++|+++|+++++.++ +++||+|+ ...+|++ ....+...+++.|+++.+++.
T Consensus 81 ~p~~~~le~~lA~l~g~~--~--~i~~ssGt~Ai~~al~~l-~~~Gd~Vi~~~~~y~~-~~~~~~~~l~~~G~~v~~v~~ 154 (415)
T 2fq6_A 81 TLTHFSLQQAMCELEGGA--G--CVLFPCGAAAVANSILAF-IEQGDHVLMTNTAYEP-SQDFCSKILSKLGVTTSWFDP 154 (415)
T ss_dssp CHHHHHHHHHHHHHHTCS--E--EEEESSHHHHHHHHHHTT-CCTTCEEEEETTSCHH-HHHHHHHTGGGGTCEEEEECT
T ss_pred CchHHHHHHHHHHHhCCC--e--EEEeCCHHHHHHHHHHHH-hCCCCEEEEeCCCchH-HHHHHHHHHHHcCcEEEEECC
Confidence 466789999999999984 2 566688899999999998 89999965 5667765 333334456678999999976
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH--cCcEEEEeCCCcCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE--KGWHVLLDATALGSKDMDTLGLS 333 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~--~g~~vvvDaa~~~~~d~~~l~l~ 333 (588)
+ |+++|+++|+ ++|++|++++++|++|.+.|+++| ++|++ +|+++++|+++..+....+++
T Consensus 155 ~------d~~~le~ai~--------~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~-- 218 (415)
T 2fq6_A 155 L------IGADIVKHLQ--------PNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALD-- 218 (415)
T ss_dssp T------CGGGGGGGCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGG--
T ss_pred C------CHHHHHHhhc--------cCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCccc--
Confidence 3 6788888887 689999999999999999999999 99999 999999999988663233332
Q ss_pred CCCCcEEEeccCccCCCCCCc---eEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC-CCccc
Q 037063 334 LFKPDFLICSFYKIFGENPSG---FGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE-SSISG 409 (588)
Q Consensus 334 ~~~~D~vv~S~~K~~G~~P~G---~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT-~~~~~ 409 (588)
+++|+++.|+||++| |.| .|+++.++++++.+..... ..|+ .+...
T Consensus 219 -~g~Div~~S~sK~lg--~~g~~~~G~l~~~~~~~~~l~~~~~---------------------------~~G~~~~~~~ 268 (415)
T 2fq6_A 219 -FGIDVSIQAATKYLV--GHSDAMIGTAVCNARCWEQLRENAY---------------------------LMGQMVDADT 268 (415)
T ss_dssp -GTCSEEEEETTTTTT--CSSSCCCEEEEECTTTHHHHHHHHH---------------------------HTTCCCCHHH
T ss_pred -cCCeEEEEeCccccC--CCCCceEEEEEeCHHHHHHHHHHHH---------------------------hcCCCCCHHH
Confidence 348999999999998 545 6999998877665542210 0111 11110
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCC------------CCcccEE
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVM------------FDRGPSL 476 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~------------~~rg~iv 476 (588)
.+.+..+++.+ ....++....+..+.+.|.+. |.+ +++-|.-. ...++++
T Consensus 269 ---a~~~~~~l~~l-----~~r~~~~~~n~~~l~~~L~~~---------~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~ 331 (415)
T 2fq6_A 269 ---AYITSRGLRTL-----GVRLRQHHESSLKVAEWLAEH---------PQVARVNHPALPGSKGHEFWKRDFTGSSGLF 331 (415)
T ss_dssp ---HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTC---------TTEEEEECTTSTTSTTHHHHHHHCSCCCSEE
T ss_pred ---HHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHcC---------CCeeEEECCCCCCCccHHHHHhhCCCCceEE
Confidence 01222344433 223334444555666666653 323 33333210 1257899
Q ss_pred EEEeecCCCCCcCHHHHHHHHHhC---CcEeccccccCcccc--cchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCCC
Q 037063 477 AFNVFDWNGTRIDPALVQKLADRH---NISLSCGFLQNIFFS--GEYEQERVRVLETRSGTNETRSGV--SVVTAALGCL 549 (588)
Q Consensus 477 ~f~~~~~~g~~i~~~~v~~~l~~~---gI~v~~G~~c~~~~~--~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~ 549 (588)
+|.+.+. ++.....++++.. +|.++.|..|+.... .. ....... ....|. +.||+|+|..
T Consensus 332 sf~l~g~----~~~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~------~~s~~~~---~~~~g~~~~~iRlS~G~e 398 (415)
T 2fq6_A 332 SFVLKKK----LNNEELANYLDNFSLFSMAYSWGGYESLILANQPE------HIAAIRP---QGEIDFSGTLIRLHIGLE 398 (415)
T ss_dssp EEEESSC----CCHHHHHHHHTTCSSCEECSCCCSSSCEEEEECHH------HHHTTCT---TCCCCCCSCEEEEECCSS
T ss_pred EEEECCC----CCHHHHHHHHHhCCcCeEeccCCCCceeEEecCCC------ccccccc---hhhcCCCCCEEEEEecCC
Confidence 9998751 1244556666654 477788988875431 10 0111000 001222 3999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 037063 550 TNFEDTYRLWAFVSRF 565 (588)
Q Consensus 550 ~t~eDv~~li~~l~~~ 565 (588)
+++++|+.+.++|++.
T Consensus 399 ~~~d~i~~l~~al~~~ 414 (415)
T 2fq6_A 399 DVDDLIADLDAGFARI 414 (415)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999998753
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.3e-24 Score=223.50 Aligned_cols=321 Identities=12% Similarity=-0.013 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....++|+.++++++.+ .++||+|+|+|+.+++.++.+++||+|+ ....|++ . ...++..|++++.++++
T Consensus 56 ~~~~~l~~~la~~~~~~----~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~-~----~~~~~~~g~~~~~~~~~ 126 (391)
T 3dr4_A 56 RFIVEFEKAFADYCGVK----HAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIA-S----ANSVTYCGATPVLVDND 126 (391)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTH-H----HHHHHHTTCEEEEECBC
T ss_pred hHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHH-H----HHHHHHCCCEEEEEecC
Confidence 45679999999999985 3899999999999999998788999966 5566664 2 23446789999999998
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFK 336 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~ 336 (588)
..++.+|+++|+++++ +++++|+ ++|+||...|+++| ++|+++|+++|+|+++..+...........
T Consensus 127 ~~~~~~d~~~l~~~~~--------~~~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~- 194 (391)
T 3dr4_A 127 PRTFNLDAAKLEALIT--------PRTKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSL- 194 (391)
T ss_dssp TTTCSBCGGGSGGGCC--------TTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-
T ss_pred ccccCcCHHHHHHhcC--------CCceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeeccc-
Confidence 5667899999998887 6788887 46799999999999 999999999999999877521111111111
Q ss_pred CcEEEec--cCccCCCCCCceEEEEEeCc-chhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhH
Q 037063 337 PDFLICS--FYKIFGENPSGFGCLFVKKS-SASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSK 413 (588)
Q Consensus 337 ~D~vv~S--~~K~~G~~P~G~G~L~v~~~-~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~ 413 (588)
.|++++| .||+++ +...|+++.+++ +.+.+.....++ ... . . .+ .+...|. ++..
T Consensus 195 ~di~~~S~s~~K~l~--~g~gg~~~~~~~~~~~~~~~~~~~g--~~~---~-~---~~------~~~~~g~-~~~~---- 252 (391)
T 3dr4_A 195 GDCATFSFFGNAIIT--TGEGGMITTNDDDLAAKMRLLRGQG--MDP---N-R---RY------WFPIVGF-NYRM---- 252 (391)
T ss_dssp SSEEEEECBTTSSSC--CBSCEEEEESCHHHHHHHHHHHBTT--CCT---T-S---TT------CCSSCCC-BCBC----
T ss_pred CCEEEEECCCCCcCC--cCCeEEEEECCHHHHHHHHHHHhcC--CCC---C-C---cc------ccccccc-ccCC----
Confidence 3677777 559887 434577777654 445554433221 100 0 0 00 0102221 1111
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCC--CCC-CCcccEEEEEeecCCCCCcCH
Q 037063 414 LVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGP--KVM-FDRGPSLAFNVFDWNGTRIDP 490 (588)
Q Consensus 414 ~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p--~~~-~~rg~iv~f~~~~~~g~~i~~ 490 (588)
..+.+++......+++++.++.+.+++++.+.|.++ +++++.+ ... .....++.+.+.+.. .++.
T Consensus 253 ~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~ 320 (391)
T 3dr4_A 253 TNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARL----------GNRVTKPHVALTGRHVFWMYTVRLGEGL--STTR 320 (391)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG----------TTSEECCCCCTTSCCCCSSEEEEECSSC--SSCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----------CccccCcCCCCCCcceeEEEEEEECCcc--chhH
Confidence 234455555555568899999999999999999985 2334443 211 122235566665421 2567
Q ss_pred HHHHHHHHhCCcEecccc---ccCcccccc---hHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 491 ALVQKLADRHNISLSCGF---LQNIFFSGE---YEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 491 ~~v~~~l~~~gI~v~~G~---~c~~~~~~~---~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
..+.+.|.++||.++.|. +|.+.+... .. .....+.. ..||++++.++|.|||+++++.|++
T Consensus 321 ~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~-----------~~lrl~~~~~~t~edi~~~~~~l~~ 388 (391)
T 3dr4_A 321 DQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDL-KIAEACGV-----------DGLNLPTHAGLTEADIDRVIAALDQ 388 (391)
T ss_dssp HHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTC-HHHHHHHH-----------HEEEECCCTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCceeecCCccccChhhhhcCcCCC-hHHHHHHh-----------CeEEccCCCCCCHHHHHHHHHHHHH
Confidence 888888888999999886 565543220 00 00111112 2899999999999999999999988
Q ss_pred hh
Q 037063 565 FL 566 (588)
Q Consensus 565 ~l 566 (588)
++
T Consensus 389 ~l 390 (391)
T 3dr4_A 389 VL 390 (391)
T ss_dssp TC
T ss_pred Hh
Confidence 75
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.2e-24 Score=230.55 Aligned_cols=325 Identities=10% Similarity=0.027 Sum_probs=217.5
Q ss_pred hHHHHHHHHHHHHHhCCCCC-------CceEEEecCHHHHHHHHHHhCCCC--C------CC--------e--EE-EcCC
Q 037063 178 SELESKIRKRIMDFMNISED-------DYTLVFTANQSSAFKLLAESYPFY--S------NP--------R--LL-TVYD 231 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~-------e~~vvft~g~T~al~lv~~s~~~~--~------gd--------~--ll-~~~e 231 (588)
.++++++++++++++|++.+ ...++||+|+|+|+.+++.+..-. + || + |+ +...
T Consensus 112 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~ 191 (486)
T 1js3_A 112 TELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQA 191 (486)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTC
T ss_pred HHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCC
Confidence 67888999999999999742 135899999999988777654110 1 42 4 44 4455
Q ss_pred CchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH
Q 037063 232 HENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE 310 (588)
Q Consensus 232 ~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~ 310 (588)
|++ + .+.++..|++++.+|++ +++.+|+++|+++|++. .+....+.+|++++++|+||.+.|+++| ++|++
T Consensus 192 h~s--~---~~~~~~~G~~v~~v~~d-~~~~~d~~~L~~~i~~~--~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~ 263 (486)
T 1js3_A 192 HSS--V---ERAGLIGGVKLKAIPSD-GKFAMRASALQEALERD--KAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHE 263 (486)
T ss_dssp CHH--H---HHHHHHHTCEEEEECCC-TTSCCCHHHHHHHHHHH--HHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH
T ss_pred cHH--H---HHHHHhCCCceEEeecC-CCCCCCHHHHHHHHHHH--HhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 653 2 34556779999999998 78899999999999821 0011123599999999999999999999 99999
Q ss_pred cCcEEEEeCCCcCCC----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcc--hhccc--CCC-CCCCceEee
Q 037063 311 KGWHVLLDATALGSK----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSS--ASVLS--GST-SSVSTIMGI 381 (588)
Q Consensus 311 ~g~~vvvDaa~~~~~----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~--~~~l~--~~~-~g~~g~v~~ 381 (588)
+|+++++|+++..+. +...+-.....+|++++++||+++. |.|+|+++++++. .+.+. +.+ .++ +....
T Consensus 264 ~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~-p~~~G~l~~~~~~~l~~~~~~~~~yl~~~-~~~~~ 341 (486)
T 1js3_A 264 EDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLV-NFDCSAMWVKRRTDLTGAFKLDPVYLKHS-HQGSG 341 (486)
T ss_dssp TTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSC-CSSCEEEEESCHHHHHGGGC-------------CC
T ss_pred cCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCC-CcceEEEEEeCHHHHHHHhcCCchhhCCC-ccccc
Confidence 999999999976541 1111100112489999999998886 8899999998763 34442 111 110 10000
Q ss_pred ecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE
Q 037063 382 EPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV 461 (588)
Q Consensus 382 ~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v 461 (588)
...+...+ .. +. +..+.. .++..+++.+...|++++.++...+++++.+.|.++ |++
T Consensus 342 --~~~~~~~~------~~-~~-~rr~~~----~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---------~~~ 398 (486)
T 1js3_A 342 --LITDYRHW------QL-PL-GRRFRS----LKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD---------PRF 398 (486)
T ss_dssp --SCCCGGGS------SS-CS-CCCCTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------TTE
T ss_pred --CCCCcccc------CC-CC-CCchhH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---------CCe
Confidence 00000000 00 11 112211 355567776666678999999999999999999984 688
Q ss_pred EEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccE
Q 037063 462 RIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSV 541 (588)
Q Consensus 462 ~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~ 541 (588)
+++.+ ...++++|.+.+.+ .+ ...+.+.|.+.|+.+..+... .+..+
T Consensus 399 ~~~~~----~~~~~v~f~~~~~~--~~-~~~l~~~L~~~g~~~~~~~~~--------------------------~~~~~ 445 (486)
T 1js3_A 399 EVCAE----VTLGLVCFRLKGSD--GL-NEALLERINSARKIHLVPCRL--------------------------RGQFV 445 (486)
T ss_dssp EECSC----CCSSEEEEEESSCH--HH-HHHHHHHHHHHTSCBCEEEEE--------------------------TTEEE
T ss_pred EEeCC----CceeEEEEEecChH--HH-HHHHHHHHHhcCCEEEEEEEE--------------------------CCEEE
Confidence 98864 24789999876411 01 245556566667653322110 23348
Q ss_pred EEEec-CCCCCHHHHHHHHHHHHHhhhh
Q 037063 542 VTAAL-GCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 542 vRvSl-g~~~t~eDv~~li~~l~~~l~~ 568 (588)
+|+++ +.++|.+||+++++.|+++++.
T Consensus 446 lRi~~~~~~~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 446 LRFAICSRKVESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99997 6789999999999999998765
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-24 Score=231.55 Aligned_cols=321 Identities=14% Similarity=0.024 Sum_probs=216.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCC-------ceEEEecCHHHHHHHHHHhCCC------------------CCCCeEE-EcCC
Q 037063 178 SELESKIRKRIMDFMNISEDD-------YTLVFTANQSSAFKLLAESYPF------------------YSNPRLL-TVYD 231 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e-------~~vvft~g~T~al~lv~~s~~~------------------~~gd~ll-~~~e 231 (588)
.++++++.+++++++|.+.+. ...+||+|+|+|+.+++.+... .++++|+ +...
T Consensus 112 ~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~ 191 (475)
T 3k40_A 112 TELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQA 191 (475)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTS
T ss_pred HHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCc
Confidence 688889999999999996431 2599999999997665554310 1234555 4556
Q ss_pred CchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH
Q 037063 232 HENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE 310 (588)
Q Consensus 232 ~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~ 310 (588)
|++ . .+.++..|++++.+|++ +++ +|+++|+++|++. ......+.+|++++.+|.+|.+.|+++| ++|++
T Consensus 192 H~s-~----~~~~~~~g~~~~~v~~d-~~~-~d~~~L~~~i~~~--~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~ 262 (475)
T 3k40_A 192 HSS-V----ERAGLLGGVKLRSVQSE-NHR-MRGAALEKAIEQD--VAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNK 262 (475)
T ss_dssp CHH-H----HHHHHHHTCEEEEECCB-TTB-CCHHHHHHHHHHH--HHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH
T ss_pred hHH-H----HHHHHHcCCceEEEECC-CCC-cCHHHHHHHHHHH--HHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHH
Confidence 654 2 34455679999999998 678 9999999999831 1112347889999999999999999999 99999
Q ss_pred cCcEEEEeCCCcCCC----CCCCC--CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcch--hccc--CCCCCCCceEe
Q 037063 311 KGWHVLLDATALGSK----DMDTL--GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSA--SVLS--GSTSSVSTIMG 380 (588)
Q Consensus 311 ~g~~vvvDaa~~~~~----d~~~l--~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~--~~l~--~~~~g~~g~v~ 380 (588)
+|++++||+++..+. ....+ ++ ..+|++++++||+++. |.|+|+++++++.. +.+. +.+... ....
T Consensus 263 ~~~~lhvD~A~~~~~~~~~~~~~~~~gi--~~~Ds~~~~~hK~l~~-p~g~g~l~~~~~~~l~~~~~~~~~yl~~-~~~~ 338 (475)
T 3k40_A 263 HNLWIHVDAAYAGSAFICPEYRHLMKGI--ESADSFNFNPHKWMLV-NFDCSAMWLKDPSWVVNAFNVDPLYLKH-DMQG 338 (475)
T ss_dssp TTCEEEEECTTGGGGGGSGGGGGGGTTG--GGCSEEEECHHHHSSC-CSSCEEEEESSGGGC------------------
T ss_pred hCCeEEEeHHhHHHHHhCHhhHHHhcCc--ccCCEEEECchhccCC-CCceEEEEEeCHHHHHHHhcCCccccCC-CcCC
Confidence 999999999976641 11111 21 2379999999997775 99999999998643 1121 111110 0000
Q ss_pred eecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe
Q 037063 381 IEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPL 460 (588)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~ 460 (588)
... +..++ .+ +.|.+ +.. ..+..+++.+...|++++.++...+++++.+.|+++ ++
T Consensus 339 ~~~---~~~~~------~~-~~sr~-~~~----l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---------~g 394 (475)
T 3k40_A 339 SAP---DYRHW------QI-PLGRR-FRA----LKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD---------SR 394 (475)
T ss_dssp --------------------CCCGG-GTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------TT
T ss_pred CCC---Ccccc------cc-cCCCc-ccH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---------CC
Confidence 000 00000 11 22222 222 456678888777789999999999999999999984 78
Q ss_pred EEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcE-eccccccCcccccchHHHHHHHHhhhcCCCCCcCCc
Q 037063 461 VRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNIS-LSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGV 539 (588)
Q Consensus 461 v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~-v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ 539 (588)
++++.+ ...++++|.+.+.+ .....+.+.|.+.|+. +..+. ..|.
T Consensus 395 ~~l~~~----~~~~iv~f~~~~~~---~~~~~l~~~L~~~g~~~~~~~~---------------------------~~g~ 440 (475)
T 3k40_A 395 FELAAE----INMGLVCFRLKGSN---ERNEALLKRINGRGHIHLVPAK---------------------------IKDV 440 (475)
T ss_dssp EEESSC----CBTTEEEEEESSCH---HHHHHHHHHHHHHTSCBCEEEE---------------------------ETTE
T ss_pred EEEecC----CceEEEEEEeCCch---HHHHHHHHHHHhCCcEEEEeeE---------------------------ECCE
Confidence 999876 35689999986421 1234455555555553 33221 1344
Q ss_pred cEEEEecC-CCCCHHHHHHHHHHHHHhhhhh
Q 037063 540 SVVTAALG-CLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 540 ~~vRvSlg-~~~t~eDv~~li~~l~~~l~~~ 569 (588)
..+|+++. +.+|.+||+++++.|++++++.
T Consensus 441 ~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~ 471 (475)
T 3k40_A 441 YFLRMAICSRFTQSEDMEYSWKEVSAAADEM 471 (475)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 49999975 6679999999999999987653
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=230.33 Aligned_cols=305 Identities=13% Similarity=0.065 Sum_probs=212.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCC-ceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 178 SELESKIRKRIMDFMNISEDD-YTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e-~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.++.+++++.+++++|.+.+. ..|+||+|+|+|+.+++.++ +++||+|++. ..|++ . ...++..|++++.++
T Consensus 81 ~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~vl~~~~~~~~-~----~~~~~~~g~~~~~~~ 154 (407)
T 3nra_A 81 LGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-VARGDKVAIVQPDYFA-N----RKLVEFFEGEMVPVQ 154 (407)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTT-CCTTCEEEEEESCCTH-H----HHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh-CCCCCEEEEcCCcccc-h----HHHHHHcCCEEEEee
Confidence 578889999999999985322 35999999999999999999 8999997654 44443 2 345567899999999
Q ss_pred ccC-----CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcCC--
Q 037063 256 FAW-----PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALGS-- 324 (588)
Q Consensus 256 ~~~-----~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~-- 324 (588)
.+. .++.+|+++|++++. +++++|++++++|+||..+| +++| ++|+++|+++|+|+++...
T Consensus 155 ~~~~~~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~ 226 (407)
T 3nra_A 155 LDYVSADETRAGLDLTGLEEAFK--------AGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRY 226 (407)
T ss_dssp BCCCSSCCSSCCBCHHHHHHHHH--------TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBC
T ss_pred cccccccCcCCCcCHHHHHHHHh--------hCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 831 567799999999998 57899999999999999999 7778 8999999999999997652
Q ss_pred --CC---CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccccccc
Q 037063 325 --KD---MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQ 399 (588)
Q Consensus 325 --~d---~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f 399 (588)
.. +..++......++++.|++|.+|.++.++|+++.++++++.+...... +
T Consensus 227 ~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~------------------------~ 282 (407)
T 3nra_A 227 AGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAI------------------------V 282 (407)
T ss_dssp TTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHH------------------------H
T ss_pred CCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhh------------------------h
Confidence 11 111110123356999999999984334589999988877666432211 0
Q ss_pred ccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEE
Q 037063 400 SKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFN 479 (588)
Q Consensus 400 ~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~ 479 (588)
..+++.+.. +++..+|+.... .+++..++.+.+++++.+.|.++ ++++++.+. .+.++.+.
T Consensus 283 -~~~~~~~~~----~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~~~----~~~~~~~~ 343 (407)
T 3nra_A 283 -SLRAAGYSQ----AVLRGWFDEAPG-WMEDRIARHQAIRDELLHVLRGC---------EGVFARTPQ----AGSYLFPR 343 (407)
T ss_dssp -TSSSCHHHH----GGGGGTTCCCTT-HHHHHHHHHHHHHHHHHHHHHTS---------TTCBCCCCS----BSSEECCB
T ss_pred -ccCCChHHH----HHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHhcC---------CCceeccCC----eeEEEEEe
Confidence 001111111 111122221001 15677788888999999999874 455555442 23444444
Q ss_pred eecCCCCCcCHHHHHHHH-HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHH
Q 037063 480 VFDWNGTRIDPALVQKLA-DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRL 558 (588)
Q Consensus 480 ~~~~~g~~i~~~~v~~~l-~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~l 558 (588)
+... .++...+.+.| +++||.+++|..|.+ .+..+||+|++. +.+||+++
T Consensus 344 ~~~~---~~~~~~~~~~l~~~~gi~v~~g~~~~~------------------------~~~~~iRis~~~--~~~~i~~~ 394 (407)
T 3nra_A 344 LPKL---AVAPAEFVKILRLQAGVVVTPGTEFSP------------------------HTADSVRLNFSQ--DHEAAVAA 394 (407)
T ss_dssp CCCB---SSCHHHHHHHHHHHHCEECEEGGGTCT------------------------TCTTBEEEECCS--CHHHHHHH
T ss_pred CCCC---CCCHHHHHHHHHHhCCEEEeCchhhCC------------------------CCCCEEEEEeCC--CHHHHHHH
Confidence 4321 14566666655 567999999876631 122389999984 99999999
Q ss_pred HHHHHHhhhh
Q 037063 559 WAFVSRFLDA 568 (588)
Q Consensus 559 i~~l~~~l~~ 568 (588)
++.|++++++
T Consensus 395 ~~~l~~~~~~ 404 (407)
T 3nra_A 395 ARRIVTLVER 404 (407)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-24 Score=227.57 Aligned_cols=348 Identities=11% Similarity=0.018 Sum_probs=211.9
Q ss_pred CeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHH
Q 037063 111 NYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMD 190 (588)
Q Consensus 111 ~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~ 190 (588)
...-.||.+++...+.+.+.+. .++|+.+ ...|+.......+++++++++
T Consensus 27 ~~~~p~~~~~~~~~~~~~~~~~------~~~~~~~------------------------~~~~~r~~~~~~~~l~~~la~ 76 (398)
T 1gc0_A 27 ALVPPVYQTATFTFPTVEYGAA------CFAGEQA------------------------GHFYSRISNPTLNLLEARMAS 76 (398)
T ss_dssp BSSCCBCCCSCBCCC---------------------------------------------------CCHHHHHHHHHHHH
T ss_pred CcCCCccCCCccccCCHHHHHH------hhcCCcC------------------------CCcccCCCChHHHHHHHHHHH
Confidence 4556788888887766666542 1333311 001122225678899999999
Q ss_pred HhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHH
Q 037063 191 FMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLM 269 (588)
Q Consensus 191 ~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~ 269 (588)
++|++ ..++++++|+|+.+++.++ +++||+|+ ....|++ ....+..+++..|++++.++.+ |.++|+
T Consensus 77 ~~g~~----~~i~~~sG~~a~~~~l~~~-~~~gd~vl~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~------d~~~l~ 144 (398)
T 1gc0_A 77 LEGGE----AGLALASGMGAITSTLWTL-LRPGDEVLLGNTLYGC-TFAFLHHGIGEFGVKLRHVDMA------DLQALE 144 (398)
T ss_dssp HHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCSH-HHHHHHHTGGGGTCEEEEECTT------CHHHHH
T ss_pred HhCCC----cEEEECCHHHHHHHHHHHH-hcCCCEEEEeCCCchh-HHHHHHHHHHHcCCEEEEECCC------CHHHHH
Confidence 99985 2566666689999999998 88999966 4566665 3333344457789999998763 789999
Q ss_pred HHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccC
Q 037063 270 KKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIF 348 (588)
Q Consensus 270 ~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~ 348 (588)
++|+ +++++|++++++|+||.+.|+++| ++|+++|+++|+|+++..+....++. +++|+++.|+||++
T Consensus 145 ~~i~--------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~---~~~d~~~~S~sK~~ 213 (398)
T 1gc0_A 145 AAMT--------PATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLE---LGADLVVHSATKYL 213 (398)
T ss_dssp HHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGG---GTCSEEEEETTTTT
T ss_pred HhcC--------CCCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCCchh---hCceEEEECCcccc
Confidence 9987 689999999999999999999999 99999999999999987652112221 34899999999988
Q ss_pred CCCCCc--eEEEEEeCcchh-cccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHH
Q 037063 349 GENPSG--FGCLFVKKSSAS-VLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADA 425 (588)
Q Consensus 349 G~~P~G--~G~L~v~~~~~~-~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~ 425 (588)
|. |.+ .|+++++++.+. .+.+...+ .+ .++.+.... +++..+++.+
T Consensus 214 ~~-~~~~~~G~l~~~~~~~~~~~~~~~~~-----------------------~~--~~~~~~~~~---~~~~~~l~~~-- 262 (398)
T 1gc0_A 214 SG-HGDITAGIVVGSQALVDRIRLQGLKD-----------------------MT--GAVLSPHDA---ALLMRGIKTL-- 262 (398)
T ss_dssp TC-SSSCCCEEEEECHHHHHHHHHTHHHH-----------------------HT--CCCCCHHHH---HHHHHHHTTH--
T ss_pred CC-CCCCeEEEEEEChHHHHHHHHHHhhc-----------------------cC--CCCCCHHHH---HHHHhccchH--
Confidence 84 544 599999887654 34332111 00 122222221 2333455433
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHccc------CCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHh
Q 037063 426 LGLILISNRARYLINWLANALMNLH------HPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADR 499 (588)
Q Consensus 426 ~G~~~i~~r~~~L~~~l~~~L~~L~------h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~ 499 (588)
....++....++.+.+.|.++. ++.-+ ..|+++++++.. ...+++++|.+.+ ..+.+.+++++
T Consensus 263 ---~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~-~~~~~~~~~~~~-~~~~~~~~~~l~~------~~~~~~~~l~~ 331 (398)
T 1gc0_A 263 ---NLRMDRHCANAQVLAEFLARQPQVELIHYPGLA-SFPQYTLARQQM-SQPGGMIAFELKG------GIGAGRRFMNA 331 (398)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC------------------CCTTEEEEEETT------HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCC-CCcCHHHHHhhC-CCCceEEEEEECC------CHHHHHHHHHh
Confidence 3333444444555555555421 11000 123455555422 1368999998864 14567888999
Q ss_pred CCcEecc---ccc------cCccc-ccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 500 HNISLSC---GFL------QNIFF-SGEYEQERVRVLETRSGTNETRSGV--SVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 500 ~gI~v~~---G~~------c~~~~-~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
.+|.++. |.. |.... +... ...+.. .|. +.||+|+|..++.++|+.+.++|+++
T Consensus 332 ~~i~~~~~s~G~~~sl~~~~~~~~~~~~~----~~~~~~--------~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 332 LQLFSRAVSLGDAESLAQHPASMTHSSYT----PEERAH--------YGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp CSSSEECSCCSCSSCEEECGGGTTTSSSC----HHHHHH--------TTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCCceeccCCCCcceeeecccccccccCC----HHHHHh--------cCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 9988765 422 32110 0000 011111 232 49999999999999999999998864
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=8.2e-25 Score=232.12 Aligned_cols=351 Identities=12% Similarity=0.031 Sum_probs=236.6
Q ss_pred eeeecCCCCCCCCHHHHHHhhhhcccC-cCCCCCCCCCCCCCCCCCcccccccccccccccccCCc-hhHHHHHHHHHHH
Q 037063 112 YVCFDYIGHGLFSYSQMHSCSSNVHSS-AASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSE-ESELESKIRKRIM 189 (588)
Q Consensus 112 ~vyLD~a~~gl~~~~~~~~~~~~~~~~-~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~-~~~~~~~~r~~ia 189 (588)
..++|+++.+++|+.+++++.+.+... ..++|. +....|.. ..++.+.+|++++
T Consensus 24 ~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~r~~la 79 (405)
T 2vi8_A 24 AKIELIASENFVSRAVMEAQGSVLTNKYAEGYPG------------------------RRYYGGCEYVDIVEELARERAK 79 (405)
T ss_dssp HSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETT------------------------EESSSCCHHHHHHHHHHHHHHH
T ss_pred cceeeccCcccCCHHHHHHHHHHhhcccccCCCC------------------------ccccccchHHHHHHHHHHHHHH
Confidence 347888888999999999987665311 122221 11001111 2456667899999
Q ss_pred HHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHH-HHHHhcCCEEEEEeccCCCCccCHHH
Q 037063 190 DFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMI-ESSKKRGARVSSAEFAWPNLRIHSGK 267 (588)
Q Consensus 190 ~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~-~~a~~~G~~v~~v~~~~~~~~i~~e~ 267 (588)
+++|+++ ..++++++|+|+.+++.++ +++||+|++ ...|++....+.. .. ...+.+++.++++..++.+|+++
T Consensus 80 ~~~g~~~---~~i~~~sGt~a~~~a~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~d~~~ 154 (405)
T 2vi8_A 80 QLFGAEH---ANVQPHSGAQANMAVYFTV-LEHGDTVLGMNLSHGGHLTHGSPVNF-SGVQYNFVAYGVDPETHVIDYDD 154 (405)
T ss_dssp HHHTCSE---EECCCSSHHHHHHHHHHHH-CCTTCEEEEECGGGTCCTTTTCTTSH-HHHHSEEEEECBCTTTCSBCHHH
T ss_pred HHhCCCc---eEEEecCcHHHHHHHHHHh-cCCCCEEEEecccccchhcccchhhh-ccceeEEEecccccccCCcCHHH
Confidence 9999963 3555555599999999999 899999664 4444431111100 01 11234777777653467799999
Q ss_pred HHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC---CCCCCCCCCCCCCcEEEec
Q 037063 268 LMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS---KDMDTLGLSLFKPDFLICS 343 (588)
Q Consensus 268 l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~---~d~~~l~l~~~~~D~vv~S 343 (588)
|+++++. .++++|+++. + ..|...++++| ++|+++|+++|+|+++..+ .+.....+ ..+|++++|
T Consensus 155 l~~~i~~-------~~~~~v~~~~-~-~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~--~~~di~~~s 223 (405)
T 2vi8_A 155 VREKARL-------HRPKLIVAAA-A-AYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPV--PYAHFVTTT 223 (405)
T ss_dssp HHHHHHH-------HCCSEEEECC-S-SCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST--TTCSEEEEE
T ss_pred HHHHHHh-------cCCeEEEEeC-C-CCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCcc--ccCCEEEEe
Confidence 9999972 2678888732 2 35788899999 9999999999999998753 22222222 148999999
Q ss_pred cCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHH
Q 037063 344 FYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHA 423 (588)
Q Consensus 344 ~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l 423 (588)
+||++|. |.| |++++++++++.+.+.... + ..|+++..++ +++.++++.+
T Consensus 224 ~sK~~~g-~~g-G~~~~~~~~~~~l~~~~~~------------------------~-~~~~~~~~~~---aa~~~al~~~ 273 (405)
T 2vi8_A 224 THKTLRG-PRG-GMILCQEQFAKQIDKAIFP------------------------G-IQGGPLMHVI---AAKAVAFGEA 273 (405)
T ss_dssp SSSTTCC-CSC-EEEEECHHHHHHHHHHHTT------------------------T-TCSSCCHHHH---HHHHHHHHHH
T ss_pred ccccCCC-CCC-eEEEEcHHHHHHHHhhhcc------------------------c-ccCCCCHHHH---HHHHHHHHHH
Confidence 9998873 778 9999998777655432211 1 2344444443 5666788876
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcE
Q 037063 424 DALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNIS 503 (588)
Q Consensus 424 ~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~ 503 (588)
...+++.+.++.+.+++++.+.|.++ +++++.|. ..+.++.+.+.+. | ++...+.+.|.++||.
T Consensus 274 ~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~---~~~~~~~~~~~~~-~--~~~~~~~~~l~~~gi~ 337 (405)
T 2vi8_A 274 LQDDFKAYAKRVVDNAKRLASALQNE----------GFTLVSGG---TDNHLLLVDLRPQ-Q--LTGKTAEKVLDEVGIT 337 (405)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHT----------TCEEGGGS---CSSSEEEEECGGG-T--CCHHHHHHHHHHHTEE
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhC----------CCeEecCC---CCceEEEEEccCC-C--CCHHHHHHHHHHcCce
Confidence 65567899999999999999999984 35666542 2467777777532 1 4577788888889999
Q ss_pred eccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCC----CCCHHHHHHHHHHHHHhhhh
Q 037063 504 LSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGC----LTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 504 v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~----~~t~eDv~~li~~l~~~l~~ 568 (588)
++.|..+..... ..+.+.+|+|++. ..+.+|++++++.|+++++.
T Consensus 338 v~~g~~~~~~~~--------------------~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 386 (405)
T 2vi8_A 338 VNKNTIPYDPES--------------------PFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp CEEECCTTCSSC--------------------TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred eccCcCccccCC--------------------CCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhc
Confidence 998854310000 0112279999997 45799999999999998864
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-24 Score=223.09 Aligned_cols=326 Identities=11% Similarity=0.088 Sum_probs=217.6
Q ss_pred CCeeeecCCCCCC-CCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGL-FSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRI 188 (588)
Q Consensus 110 ~~~vyLD~a~~gl-~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~i 188 (588)
++.++|+.+...+ .|+.+.+++.+.+...... |+. ..-..++|+.|
T Consensus 29 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~-------------------------------y~~--~~~~~~l~~~l 75 (370)
T 2z61_A 29 KKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTH-------------------------------YTD--SRGILELREKI 75 (370)
T ss_dssp CCCEECCCCSCSSCCCHHHHHHHHHHHHTTCCS-------------------------------CCC--TTCCHHHHHHH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHHcCccC-------------------------------CCC--CCCCHHHHHHH
Confidence 4678888877654 4677788776554321100 000 00113566666
Q ss_pred HHHh----CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCcc
Q 037063 189 MDFM----NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAWPNLRI 263 (588)
Q Consensus 189 a~~l----ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i 263 (588)
++++ |.+.+...|++|+|+|+|+.+++.++ +++||+|++ ...|++ . ...++..|++++.++ +
T Consensus 76 a~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~~~~-~----~~~~~~~g~~~~~v~-------~ 142 (370)
T 2z61_A 76 SELYKDKYKADIIPDNIIITGGSSLGLFFALSSI-IDDGDEVLIQNPCYPC-Y----KNFIRFLGAKPVFCD-------F 142 (370)
T ss_dssp HHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCTH-H----HHHHHHTTCEEEEEC-------S
T ss_pred HHHHHHHhCCCCChhhEEECCChHHHHHHHHHHh-cCCCCEEEEeCCCchh-H----HHHHHHcCCEEEEeC-------C
Confidence 6665 43222335999999999999999999 899999664 455553 2 234567899998886 5
Q ss_pred CHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC-C---CCCCCC-CCCCC
Q 037063 264 HSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK-D---MDTLGL-SLFKP 337 (588)
Q Consensus 264 ~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~-d---~~~l~l-~~~~~ 337 (588)
|.++|+++++ +++++|++++++|+||..+|++ | ++|+++|+++|+|+++.... + ..-..+ ...+.
T Consensus 143 d~~~l~~~l~--------~~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 213 (370)
T 2z61_A 143 TVESLEEALS--------DKTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEK 213 (370)
T ss_dssp SHHHHHHHCC--------SSEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSS
T ss_pred CHHHHHHhcc--------cCceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCc
Confidence 7899999887 5789999999999999999999 9 99999999999999976531 0 111122 12357
Q ss_pred cEEEeccCccCCCCCCc--eEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHH
Q 037063 338 DFLICSFYKIFGENPSG--FGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLV 415 (588)
Q Consensus 338 D~vv~S~~K~~G~~P~G--~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~a 415 (588)
|+++.|+||++| +.| +|++++++++++.+.....+ ..++.+.... ++
T Consensus 214 ~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~---~a 262 (370)
T 2z61_A 214 TILINGFSKLYA--MTGWRIGYVISNDEIIEAILKLQQN--------------------------LFISAPTISQ---YA 262 (370)
T ss_dssp EEEEEESTTTTT--CGGGCCEEEECCHHHHHHHHHHHHH--------------------------HTSSSCHHHH---HH
T ss_pred EEEEecChhccC--CccceEEEEEECHHHHHHHHHHHhh--------------------------cccCCCHHHH---HH
Confidence 999999999998 446 99999999877766432211 0112222221 33
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHH
Q 037063 416 ECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQK 495 (588)
Q Consensus 416 l~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~ 495 (588)
+..+|+.+....++++.++.+.+++++.+.|.++ +++++.+. .+.++.+.+.+ +...+.+
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~----~~~~~~~~~~~------~~~~~~~ 322 (370)
T 2z61_A 263 ALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF----------GWEVNNPI----GAYYVFPNIGE------DGREFAY 322 (370)
T ss_dssp HGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------TCBCCCCC----BTTEECCBCSS------CHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc----------CCeecCCC----cceEEEEecCC------CHHHHHH
Confidence 3445543112235778888889999999999874 23333331 22333334432 3556655
Q ss_pred HH-HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 496 LA-DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 496 ~l-~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
.| +++||.++.|..|.. .+.+++|+|++ ++.||++++++.|+++++
T Consensus 323 ~l~~~~gi~v~~g~~f~~------------------------~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 323 KLLKEKFVALTPGIGFGS------------------------KGKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp HHHHHHCEECEEGGGGCG------------------------GGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCEEEeCchhhCC------------------------CCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 55 478999998865521 01228999999 699999999999998775
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=225.02 Aligned_cols=296 Identities=9% Similarity=0.015 Sum_probs=203.3
Q ss_pred HHHHHHHHHhC------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 183 KIRKRIMDFMN------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 183 ~~r~~ia~~lg------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
++|+.++++++ ++++ .|+||+|+|+|+++++.++ .++||+|++ ...|++ . ...++..|++++.++
T Consensus 62 ~lr~~la~~~~~~~~~~~~~~--~i~~t~g~~~a~~~~~~~~-~~~gd~vl~~~~~~~~-~----~~~~~~~g~~~~~~~ 133 (377)
T 3fdb_A 62 LLSQATAEFYADRYGYQARPE--WIFPIPDVVRGLYIAIDHF-TPAQSKVIVPTPAYPP-F----FHLLSATQREGIFID 133 (377)
T ss_dssp CHHHHHHHHHHHHHCCCCCGG--GEEEESCHHHHHHHHHHHH-SCTTCCEEEEESCCTH-H----HHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCHH--HEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCcHh-H----HHHHHHcCCEEEEcc
Confidence 45566666655 5554 4999999999999999998 889999664 445553 2 344566799999999
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcCCC-----C
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALGSK-----D 326 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~~~-----d 326 (588)
.+ ++ +|+++|+++++ ++++++++++++|+||..+|.+++ ++|+++|+++|+|+++.... .
T Consensus 134 ~~-~~--~d~~~l~~~l~--------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~ 202 (377)
T 3fdb_A 134 AT-GG--INLHDVEKGFQ--------AGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHT 202 (377)
T ss_dssp CT-TS--CCHHHHHHHHH--------TTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCC
T ss_pred CC-CC--CCHHHHHHHhc--------cCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCC
Confidence 97 33 99999999998 568999999999999999987664 56899999999999976521 0
Q ss_pred CCCC-CCCCCCCcEEEeccCccCCCCCCceEEEEE-eCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 327 MDTL-GLSLFKPDFLICSFYKIFGENPSGFGCLFV-KKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 327 ~~~l-~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v-~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
..++ .+.....++++.|++|.+|.+..++|++++ ++++++.+...... ..++
T Consensus 203 ~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~--------------------------~~~~ 256 (377)
T 3fdb_A 203 VAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPV--------------------------IKDG 256 (377)
T ss_dssp CGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHH--------------------------HHCC
T ss_pred cccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHh--------------------------hcCC
Confidence 1111 111122458899999999843345898887 45665555432211 0112
Q ss_pred CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCC
Q 037063 405 SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWN 484 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~ 484 (588)
.+..+. +++..+|+...+ .++++.++.+.+++++.+.|+++ .|+++++.+. .+.++.+.+...
T Consensus 257 ~~~~~~---~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~--------~~~~~~~~~~----~~~~~~~~~~~~- 319 (377)
T 3fdb_A 257 ASTLGL---IAAEAAYRYGTD-FLNQEVAYLKNNHDFLLHEIPKR--------IPGAKITPMQ----ATYLMWIDFRDT- 319 (377)
T ss_dssp CCHHHH---HHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHH--------STTCEECCCS----BCSEEEEECTTS-
T ss_pred CCHHHH---HHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhh--------CCCceEecCC----eeEEEEEECccc-
Confidence 222222 333455554222 25788889999999999999883 3567777542 233334555442
Q ss_pred CCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 485 GTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 485 g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
+ ++.+.+.++++++||.+++|..|.. .+.++||+|++ ++.|||+++++.|++
T Consensus 320 ~--~~~~~~~~l~~~~gi~v~~g~~~~~------------------------~~~~~~Ris~~--~~~e~i~~~l~~l~~ 371 (377)
T 3fdb_A 320 T--IEGSPSEFFIEKAKVAMNDGAWFGE------------------------DGTGFCRLNFA--TSREVLEEAIDRMAK 371 (377)
T ss_dssp C--CCSCHHHHHHHHHCEECEEGGGGCG------------------------GGTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHhCCEEecCChhccC------------------------CCCCEEEEEeC--CCHHHHHHHHHHHHH
Confidence 1 2334556777778999999876631 11229999988 489999999999999
Q ss_pred hhhh
Q 037063 565 FLDA 568 (588)
Q Consensus 565 ~l~~ 568 (588)
++++
T Consensus 372 ~l~~ 375 (377)
T 3fdb_A 372 AVSH 375 (377)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 8764
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-24 Score=223.90 Aligned_cols=300 Identities=11% Similarity=0.057 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCc-eEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 179 ELESKIRKRIMDFMNISEDDY-TLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~-~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++.+.+.+.+.+.+|.+.+.. .|++|+|+|+|+.+++.++ +++||+|+ ....|++ . ...++..|++++.++.
T Consensus 71 ~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~~~~-~----~~~~~~~g~~~~~v~~ 144 (386)
T 1u08_A 71 ALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITAL-VRNGDEVICFDPSYDS-Y----APAIALSGGIVKRMAL 144 (386)
T ss_dssp HHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCTT-H----HHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHh-CCCCCEEEEeCCCchh-H----HHHHHHcCCEEEEeec
Confidence 344444444444457532223 4999999999999999998 88999966 4555654 2 2345678999999998
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCH---HHH-HHHHHcCcEEEEeCCCcCC----CCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSY---MWM-SVAAEKGWHVLLDATALGS----KDMD 328 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl---~~I-~~a~~~g~~vvvDaa~~~~----~d~~ 328 (588)
+.+++.+|.++|+++++ +++++|++++++|+||..+|. ++| ++|+++|+++|+|+++... ....
T Consensus 145 ~~~~~~~d~~~l~~~l~--------~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~ 216 (386)
T 1u08_A 145 QPPHFRVDWQEFAALLS--------ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHA 216 (386)
T ss_dssp CTTTCCCCHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCC
T ss_pred CcccCcCCHHHHHHhhc--------ccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCc
Confidence 74456799999999987 679999999999999999985 556 8899999999999997652 1111
Q ss_pred CC-CCC-CCCCcEEEeccCccCCCCCCc--eEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 329 TL-GLS-LFKPDFLICSFYKIFGENPSG--FGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 329 ~l-~l~-~~~~D~vv~S~~K~~G~~P~G--~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
++ .+. ..+.|+++.|++|.+| +.| +|++++++++++.+...... ...+
T Consensus 217 ~~~~~~~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~~~--------------------------~~~~ 268 (386)
T 1u08_A 217 SVLAHPQLRERAVAVSSFGKTYH--MTGWKVGYCVAPAPISAEIRKVHQY--------------------------LTFS 268 (386)
T ss_dssp CGGGSHHHHTTEEEEEEHHHHTT--CGGGCCEEEECCHHHHHHHHHHHHH--------------------------HTSS
T ss_pred ChhcccCccCcEEEEecchhhcC--CcccceEEEEcCHHHHHHHHHHHHh--------------------------hccC
Confidence 11 111 2347999999999998 456 89999998877666432210 0011
Q ss_pred CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCC
Q 037063 405 SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWN 484 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~ 484 (588)
.+.... +++..+|+.... .++++.++.+++++++.+.|.++ +++++.+ ..+.++.+.+.+..
T Consensus 269 ~~~~~~---~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~----~~g~~~~~~~~~~~ 330 (386)
T 1u08_A 269 VNTPAQ---LALADMLRAEPE-HYLALPDFYRQKRDILVNALNES----------RLEILPC----EGTYFLLVDYSAVS 330 (386)
T ss_dssp CCHHHH---HHHHHHHHHCTH-HHHTHHHHHHHHHHHHHHHTTSS----------SCEECCC----CBSSEEEEECTTTC
T ss_pred CChHHH---HHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHHHHC----------CCeecCC----CceEEEEEecCCCC
Confidence 121111 344455554322 36778888899999999998874 3556544 23456767665420
Q ss_pred CCCcCHHHHHH-HHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 485 GTRIDPALVQK-LADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 485 g~~i~~~~v~~-~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
..+...+.+ +++++||.+++|..+... ..+...||+|++ ++.|||+++++.|+
T Consensus 331 --~~~~~~~~~~l~~~~gi~v~~g~~f~~~----------------------~~~~~~iRis~~--~~~~~i~~~~~~l~ 384 (386)
T 1u08_A 331 --TLDDVEFCQWLTQEHGVAAIPLSVFCAD----------------------PFPHKLIRLCFA--KKESTLLAAAERLR 384 (386)
T ss_dssp --CSCHHHHHHHHHHHSCEECEEGGGGCSS----------------------CCCSCEEEEECC--SCHHHHHHHHHHHT
T ss_pred --CCCHHHHHHHHHHhCCEEEeCchHhCCC----------------------CCCCCEEEEEEc--CCHHHHHHHHHHHh
Confidence 034556655 556899999987543110 012238999997 48999999999986
Q ss_pred H
Q 037063 564 R 564 (588)
Q Consensus 564 ~ 564 (588)
+
T Consensus 385 ~ 385 (386)
T 1u08_A 385 Q 385 (386)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-23 Score=217.44 Aligned_cols=285 Identities=13% Similarity=0.125 Sum_probs=207.1
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
.++|+.+++++++++++ |+||+|+|+|+.+++.++ |+|++ ...|++ . ...++..|++++.++.+ ++
T Consensus 64 ~~l~~~la~~~~~~~~~--i~~~~g~t~al~~~~~~~-----d~vi~~~~~~~~-~----~~~~~~~g~~~~~~~~~-~~ 130 (361)
T 3ftb_A 64 RRLNKSIENYLKLKDIG--IVLGNGASEIIELSISLF-----EKILIIVPSYAE-Y----EINAKKHGVSVVFSYLD-EN 130 (361)
T ss_dssp HHHHHHHHHHHTCCSCE--EEEESSHHHHHHHHHTTC-----SEEEEEESCCTH-H----HHHHHHTTCEEEEEECC-TT
T ss_pred HHHHHHHHHHhCCCcce--EEEcCCHHHHHHHHHHHc-----CcEEEecCChHH-H----HHHHHHcCCeEEEeecC-cc
Confidence 58999999999997764 999999999999999987 78654 445553 2 34556789999999998 55
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcCC-CC--CCCCCC-
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALGS-KD--MDTLGL- 332 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~~-~d--~~~l~l- 332 (588)
+.+++++|+++++ + +++|++++++|+||..+|.+++ ++|+++|+++|+|+++... .+ ...+.+
T Consensus 131 ~~~~~~~l~~~l~--------~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 201 (361)
T 3ftb_A 131 MCIDYEDIISKID--------D-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEI 201 (361)
T ss_dssp SCCCHHHHHHHTT--------T-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGT
T ss_pred cCCCHHHHHHhcc--------C-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhc
Confidence 6788899999987 5 8999999999999999997764 6677999999999996532 10 111111
Q ss_pred CCCCCcEEEeccCccCCCCCCceEEEE-EeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchh
Q 037063 333 SLFKPDFLICSFYKIFGENPSGFGCLF-VKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVS 411 (588)
Q Consensus 333 ~~~~~D~vv~S~~K~~G~~P~G~G~L~-v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~ 411 (588)
.....++++.|++|.+|.++.++|+++ .++++++.+...... .+.+....
T Consensus 202 ~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~- 252 (361)
T 3ftb_A 202 KNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNP----------------------------WNINCFAE- 252 (361)
T ss_dssp TTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSCT----------------------------TCSCHHHH-
T ss_pred ccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCCC----------------------------CCCCHHHH-
Confidence 122345788899999884334579888 566666655433211 12222222
Q ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEE-EeCCCCCCCcccEEEEEeecCCCCCcCH
Q 037063 412 SKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVR-IYGPKVMFDRGPSLAFNVFDWNGTRIDP 490 (588)
Q Consensus 412 ~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~-i~~p~~~~~rg~iv~f~~~~~~g~~i~~ 490 (588)
+++..+|+.. ..++++.++.+.+++++.+.|.++ ++++ ++.+ .++++.+.+.+ .+.
T Consensus 253 --~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~---------~~~~~~~~~-----~~~~~~~~~~~-----~~~ 309 (361)
T 3ftb_A 253 --MAAINCLKDT--NYIEESLLWIKKERKRFIEELNKI---------GFIKRVFSP-----HANFVLCRLEN-----ISG 309 (361)
T ss_dssp --HHHHHTSSCH--HHHHHHHHHHHHHHHHHHHHHHHS---------SSEEEEECC-----SSSEEEEEESS-----SCH
T ss_pred --HHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHhC---------CCCceecCC-----CCeEEEEEcCC-----CCH
Confidence 3444555532 236788889999999999999884 6777 6653 46777777765 457
Q ss_pred HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 491 ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 491 ~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
..+.+.|.++||.+++|..|.. .+.++||+|++ +.+|++++++.|+++++
T Consensus 310 ~~l~~~l~~~gi~v~~g~~~~~------------------------~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 310 EKLYDSLLKEDIVIRRCCNFIG------------------------LDDSFVRFAIK---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp HHHHHHHHTTTEECEECTTSTT------------------------CCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCeEEeeCccCCC------------------------CCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence 7788878778999999876621 22239999987 88999999999998764
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-23 Score=226.48 Aligned_cols=331 Identities=12% Similarity=0.026 Sum_probs=222.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCC-------------CCCCeEEE-cCCCchhHHHHHHHH
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPF-------------YSNPRLLT-VYDHENEAAALMIES 243 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~-------------~~gd~ll~-~~e~~s~~~~~~~~~ 243 (588)
.++++++++++++++|.+.+...++||+|+|+|+..++.+..- .+++.|++ ...|++ . .+.
T Consensus 134 ~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s-~----~~~ 208 (511)
T 3vp6_A 134 VLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYS-I----KKA 208 (511)
T ss_dssp HHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTH-H----HHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHH-H----HHH
Confidence 6788899999999999975445699999999998877655421 13456654 455554 2 345
Q ss_pred HHhcCC---EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeC
Q 037063 244 SKKRGA---RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDA 319 (588)
Q Consensus 244 a~~~G~---~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDa 319 (588)
++..|+ +++.++.+ +++.+|+++|+++|.+. +.....+++|++++++|++|.+.|+++| ++|+++|++++||+
T Consensus 209 ~~~~g~g~~~~~~v~~d-~~~~~d~~~Le~~i~~~--~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~ 285 (511)
T 3vp6_A 209 GAALGFGTDNVILIKCN-ERGKIIPADFEAKILEA--KQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDA 285 (511)
T ss_dssp HHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHH--HHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEE
T ss_pred HHHcCCCCCcEEEeecC-CCCccCHHHHHHHHHHH--HhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEc
Confidence 566677 99999998 67899999999999731 1122348999999999999999999999 99999999999999
Q ss_pred CCcCCCC-CCCC--CCC-CCCCcEEEeccCccCCCCCCceEEEEEeCcc-hhcc---cCCCCCCCceEeeecCCCccccc
Q 037063 320 TALGSKD-MDTL--GLS-LFKPDFLICSFYKIFGENPSGFGCLFVKKSS-ASVL---SGSTSSVSTIMGIEPSFSEIIEL 391 (588)
Q Consensus 320 a~~~~~d-~~~l--~l~-~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~-~~~l---~~~~~g~~g~v~~~~~~~~~~~~ 391 (588)
++.++.- .... .+. ..++|++++++||+++. |.|+|+++++++. +..+ .+.+....+... ...+
T Consensus 286 a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~-------~~~~ 357 (511)
T 3vp6_A 286 AWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGV-LLQCSAILVKEKGILQGCNQMHASYLFQQDKHY-------DVSY 357 (511)
T ss_dssp TTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCC-CSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSS-------CGGG
T ss_pred cchhhHhhChhhhhhccCCccCCEEEECcccccCC-CcCeEEEEEeCHHHHHHHhccCCccccCccccc-------cccc
Confidence 9776521 1111 111 23489999999998875 8999999998864 3332 122211000000 0000
Q ss_pred ccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCC
Q 037063 392 ETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFD 471 (588)
Q Consensus 392 ~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~ 471 (588)
+.... .. +.|. .+.. .++..+++.+...|++++.+|...+++++.+.|+++ |+++++.+.. .
T Consensus 358 ~~~~~-~~-~~~r-~~~a----l~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~---------pg~~l~~~~~--p 419 (511)
T 3vp6_A 358 DTGDK-AI-QCGR-HVDI----FKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR---------EEFEMVFNGE--P 419 (511)
T ss_dssp CCGGG-SS-CSSC-CCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---------TTEEESSSSC--C
T ss_pred CccCC-CC-CCCC-chHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---------CCEEEEecCC--C
Confidence 00000 11 1222 2222 456677887777789999999999999999999984 7899987421 3
Q ss_pred cccEEEEEeecCC--CCCcC----------HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCc
Q 037063 472 RGPSLAFNVFDWN--GTRID----------PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGV 539 (588)
Q Consensus 472 rg~iv~f~~~~~~--g~~i~----------~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ 539 (588)
..++++|.+.... +..-+ ...+.+.|.+.|+.+...... ..+.
T Consensus 420 ~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~-------------------------~~~~ 474 (511)
T 3vp6_A 420 EHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQ-------------------------GDKA 474 (511)
T ss_dssp SSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEE-------------------------TTEE
T ss_pred CeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEe-------------------------CCce
Confidence 5678899864321 00000 124556666667643221000 0122
Q ss_pred cEEEEec-CCCCCHHHHHHHHHHHHHhhh
Q 037063 540 SVVTAAL-GCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 540 ~~vRvSl-g~~~t~eDv~~li~~l~~~l~ 567 (588)
..+|+++ +..++.+||+++++.|+++-+
T Consensus 475 ~~lRi~~~~~~~t~~di~~ll~~i~~~~~ 503 (511)
T 3vp6_A 475 NFFRMVISNPAATQSDIDFLIEEIERLGQ 503 (511)
T ss_dssp EEEEECCCCTTCCHHHHHHHHHHHHHHHC
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 3799999 799999999999999998644
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-24 Score=228.57 Aligned_cols=298 Identities=12% Similarity=0.019 Sum_probs=206.8
Q ss_pred HHHHHHHHHHhC-----CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 182 SKIRKRIMDFMN-----ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 182 ~~~r~~ia~~lg-----a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.++|+.++++++ +++++ |++|+|+|+|+.+++.++ .++||+|++. ..|+. . ...++..|++++.++
T Consensus 99 ~~lr~~la~~~~~~~~~~~~~~--v~~t~g~t~al~~~~~~l-~~~gd~vl~~~p~~~~-~----~~~~~~~g~~~~~~~ 170 (427)
T 3dyd_A 99 LSSREEIASYYHCPEAPLEAKD--VILTSGCSQAIDLCLAVL-ANPGQNILVPRPGFSL-Y----KTLAESMGIEVKLYN 170 (427)
T ss_dssp HHHHHHHHHHHCBTTBCCCGGG--EEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCTH-H----HHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCCChHH--EEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCchh-H----HHHHHHcCCEEEEEe
Confidence 589999999998 65554 999999999999999999 7899997654 34432 2 345677899999999
Q ss_pred ccC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcC----CC-
Q 037063 256 FAW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALG----SK- 325 (588)
Q Consensus 256 ~~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~----~~- 325 (588)
.+. .++.+|.++|++.++ +++++|++++++|+||..+| +++| ++|+++|+++|+|+++.. +.
T Consensus 171 ~~~~~~~~~d~~~l~~~l~--------~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~ 242 (427)
T 3dyd_A 171 LLPEKSWEIDLKQLEYLID--------EKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCK 242 (427)
T ss_dssp EEGGGTTEECHHHHHSSCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCC
T ss_pred cccccCCCCCHHHHHHHhc--------cCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCc
Confidence 863 345689999998887 67999999999999999999 8888 999999999999999654 21
Q ss_pred --CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCc-------chhcccCCCCCCCceEeeecCCCcccccccccc
Q 037063 326 --DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKS-------SASVLSGSTSSVSTIMGIEPSFSEIIELETLDE 396 (588)
Q Consensus 326 --d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~-------~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~ 396 (588)
.+..++ .....+++.|++|.||.+..++|+++++++ +++.+.....
T Consensus 243 ~~~~~~~~--~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~----------------------- 297 (427)
T 3dyd_A 243 YEPLATLS--TDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQ----------------------- 297 (427)
T ss_dssp CCCGGGGC--SSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH-----------------------
T ss_pred CccHHHhC--CCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHh-----------------------
Confidence 111222 111236778999988743334899999863 2222211100
Q ss_pred cccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE
Q 037063 397 SSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL 476 (588)
Q Consensus 397 ~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv 476 (588)
...+++..+. +++..+|+......++.+.++++.+++++.+.|+++ |+++++.|. .+.++
T Consensus 298 ----~~~~~~~~~~---~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------~g~~~~~p~----~g~~~ 357 (427)
T 3dyd_A 298 ----RILGPCTIVQ---GALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAI---------PGLRPVRPS----GAMYL 357 (427)
T ss_dssp ----HHCCSCHHHH---HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHS---------TTEEEECCS----BTTEE
T ss_pred ----ccCCCCHHHH---HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcC---------CCceecCCC----eeEEE
Confidence 0112222222 344455553222236778888899999999999884 678877652 34455
Q ss_pred EEEeecC-CCCCcCHHH-HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHH
Q 037063 477 AFNVFDW-NGTRIDPAL-VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFED 554 (588)
Q Consensus 477 ~f~~~~~-~g~~i~~~~-v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eD 554 (588)
.+.+... -....+... +.++++++||.+++|..|. ..+++|+|++ ++.++
T Consensus 358 ~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~--------------------------~~~~iRis~~--~~~e~ 409 (427)
T 3dyd_A 358 MVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFE--------------------------YPNFIRVVIT--VPEVM 409 (427)
T ss_dssp EEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGT--------------------------CTTEEEEESC--SCHHH
T ss_pred EEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccC--------------------------CCCeEEEEEC--CCHHH
Confidence 5555421 001123444 4556678999999886552 1129999987 68999
Q ss_pred HHHHHHHHHHhhhh
Q 037063 555 TYRLWAFVSRFLDA 568 (588)
Q Consensus 555 v~~li~~l~~~l~~ 568 (588)
|+++++.|.+++++
T Consensus 410 i~~~l~~l~~~l~~ 423 (427)
T 3dyd_A 410 MLEACSRIQEFCEQ 423 (427)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=223.25 Aligned_cols=321 Identities=12% Similarity=0.012 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCc-eEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 179 ELESKIRKRIMDFMNISEDDY-TLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~-~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++.+.+.+.+.+.+|++.+.. .|++|+|+|+|+.+++.++ +++||+|+ ....|++ . ...++..|++++.++.
T Consensus 66 ~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~-~~~gd~Vl~~~~~y~~-~----~~~~~~~g~~~~~v~~ 139 (411)
T 2o0r_A 66 PLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGL-VEPGSEVLLIEPFYDS-Y----SPVVAMAGAHRVTVPL 139 (411)
T ss_dssp HHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCTT-H----HHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHh-cCCCCEEEEeCCCcHh-H----HHHHHHcCCEEEEeec
Confidence 444444444444457542222 5999999999999999998 88999966 4556664 2 2345678999999998
Q ss_pred cCC--CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCH---HHH-HHHHHcCcEEEEeCCCcCCC----C
Q 037063 257 AWP--NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSY---MWM-SVAAEKGWHVLLDATALGSK----D 326 (588)
Q Consensus 257 ~~~--~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl---~~I-~~a~~~g~~vvvDaa~~~~~----d 326 (588)
+.. ++.+|+++|+++++ +++++|++++++|+||..+|. ++| ++|+++|+++|+|+++.... .
T Consensus 140 ~~~~~~~~~d~~~l~~~l~--------~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~ 211 (411)
T 2o0r_A 140 VPDGRGFALDADALRRAVT--------PRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHAR 211 (411)
T ss_dssp EEETTEEECCHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC
T ss_pred cccccCCCCCHHHHHHhhc--------cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC
Confidence 632 35689999999987 679999999999999999996 567 88999999999999976531 0
Q ss_pred CCCC-CCC-CCCCcEEEeccCccCCCCCCc--eEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccC
Q 037063 327 MDTL-GLS-LFKPDFLICSFYKIFGENPSG--FGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKF 402 (588)
Q Consensus 327 ~~~l-~l~-~~~~D~vv~S~~K~~G~~P~G--~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~ 402 (588)
..++ .+. ....|+++.|++|.+| +.| +|++++++++++.+...... ..
T Consensus 212 ~~~~~~~~~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~~~--------------------------~~ 263 (411)
T 2o0r_A 212 HLPLAGFDGMAERTITISSAAKMFN--CTGWKIGWACGPAELIAGVRAAKQY--------------------------LS 263 (411)
T ss_dssp CCCGGGSTTTGGGEEEEEEHHHHTT--CTTTCEEEEECCHHHHHHHHHHHHH--------------------------HT
T ss_pred CcChhhccCCCCCEEEEeechhhcC--CccceEEEEeeCHHHHHHHHHHHhh--------------------------cc
Confidence 1111 111 1347999999999998 446 99999988877655432110 01
Q ss_pred CCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeec
Q 037063 403 PESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFD 482 (588)
Q Consensus 403 GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~ 482 (588)
.+.+.... +++..+|+.... .++++.++.+.+++++.+.|.++ +++++.+ ..+.++.+.+.+
T Consensus 264 ~~~~~~~~---~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~----~~g~~~~~~~~~ 325 (411)
T 2o0r_A 264 YVGGAPFQ---PAVALALDTEDA-WVAALRNSLRARRDRLAAGLTEI----------GFAVHDS----YGTYFLCADPRP 325 (411)
T ss_dssp SCCCTTHH---HHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHH----------TCEECCC----CBSSEEEEECGG
T ss_pred CCCChHHH---HHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHHHc----------CCEecCC----CeeEEEEEecCC
Confidence 11122211 344456654322 36788889999999999999874 3455543 224467777764
Q ss_pred CCCCCcCHHHHHH-HHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHH
Q 037063 483 WNGTRIDPALVQK-LADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAF 561 (588)
Q Consensus 483 ~~g~~i~~~~v~~-~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~ 561 (588)
..+ .+...+.+ +++++||.++.|..|....... ...+.. .+.++||+|++ ++.|||+++++.
T Consensus 326 ~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~-----~~~~~~--------~~~~~iRis~~--~~~e~i~~~~~~ 388 (411)
T 2o0r_A 326 LGY--DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQ-----ASQQAD--------VWNHLVRFTFC--KRDDTLDEAIRR 388 (411)
T ss_dssp GTC--CCHHHHHHHHHHHHSEECEEGGGGSCCC-------------C--------CGGGCEEEECC--SCHHHHHHHHHH
T ss_pred CCC--CCHHHHHHHHHHhCCEEEcChhhhCCCcccc-----cccccc--------CCCCeEEEEec--CCHHHHHHHHHH
Confidence 211 34555555 5567899999886653211000 000000 12238999986 489999999999
Q ss_pred HHHhhhhhhccccccc
Q 037063 562 VSRFLDADFVEKERWR 577 (588)
Q Consensus 562 l~~~l~~~~~~~~~~~ 577 (588)
|++++++.-. +-+|.
T Consensus 389 l~~~~~~~~~-~~~~~ 403 (411)
T 2o0r_A 389 LSVLAERPAT-GVPRG 403 (411)
T ss_dssp HGGGGC----------
T ss_pred HHHHHhccCc-CCCcc
Confidence 9998766432 23553
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-23 Score=217.28 Aligned_cols=283 Identities=10% Similarity=0.048 Sum_probs=205.2
Q ss_pred HHHHHHHHH------hCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 183 KIRKRIMDF------MNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 183 ~~r~~ia~~------lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
++|+.++++ ++++++ .|++|+|+++++.+++.++ .++||+|++ ...|++ . ...++..|++++.++
T Consensus 73 ~l~~~la~~l~~~~g~~~~~~--~v~~~~G~~~al~~~~~~l-~~~gd~Vl~~~~~y~~-~----~~~~~~~g~~~~~v~ 144 (369)
T 3cq5_A 73 ELRDELAAYITKQTGVAVTRD--NLWAANGSNEILQQLLQAF-GGPGRTALGFQPSYSM-H----PILAKGTHTEFIAVS 144 (369)
T ss_dssp HHHHHHHHHHHHHHCCCCCGG--GEEEESHHHHHHHHHHHHH-CSTTCEEEEEESSCTH-H----HHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhhhhcccCCCChH--hEEECCChHHHHHHHHHHh-cCCCCEEEEcCCChHH-H----HHHHHHcCCEEEEec
Confidence 667777776 455544 4999999999999999998 889999664 455553 2 234567899999999
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCC-cceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC-CCCCCCC
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKK-KRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK-DMDTLGL 332 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~-~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~-d~~~l~l 332 (588)
.+ +++.+|+++|+++++ + ++++|++++++|+||..+|++++ ++++..++++|+|+++.... +...+.+
T Consensus 145 ~~-~~~~~d~~~l~~~i~--------~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~ 215 (369)
T 3cq5_A 145 RG-ADFRIDMDVALEEIR--------AKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTL 215 (369)
T ss_dssp CC-TTSSCCHHHHHHHHH--------HHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGG
T ss_pred CC-cCCCCCHHHHHHHhh--------ccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHH
Confidence 87 556799999999997 4 68899999999999999999999 99999999999999976542 1111222
Q ss_pred -CCCC-CcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 333 -SLFK-PDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 333 -~~~~-~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
...+ .++++.|++|.+|.+..++|++++++++++.+...... | +.+....
T Consensus 216 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~------------------------~----~~~~~~~ 267 (369)
T 3cq5_A 216 LEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRLP------------------------Y----HLSALSQ 267 (369)
T ss_dssp TTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTTSCT------------------------T----CSCHHHH
T ss_pred HhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHcCCC------------------------C----CCCHHHH
Confidence 2334 57999999999983222379999998887766543211 0 1121111
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCH
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDP 490 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~ 490 (588)
+++..+|+..+ .++++.++.+.+++++.+.|.++ +++++. ..+.++.+.+. .+.
T Consensus 268 ---~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~-----~~~~~~~~~~~------~~~ 321 (369)
T 3cq5_A 268 ---AAAIVALRHSA--DTLGTVEKLSVERVRVAARLEEL----------GYAVVP-----SESNFVFFGDF------SDQ 321 (369)
T ss_dssp ---HHHHHHHHTHH--HHHTHHHHHHHHHHHHHHHHHHH----------TCEEEC-----CSSSEEEEECC------SSH
T ss_pred ---HHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHhC----------CCEECC-----CCCeEEEEECC------CCH
Confidence 33345555322 25778888889999999999874 345552 24567777654 246
Q ss_pred HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 491 ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 491 ~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
..+.+.|.++||.++.|.. . +++|+|++ +.+|++++++.|+++++.
T Consensus 322 ~~l~~~l~~~gi~v~~~~~---------------------------~--~~iRis~~---~~~~i~~~~~~l~~~~~~ 367 (369)
T 3cq5_A 322 HAAWQAFLDRGVLIRDVGI---------------------------A--GHLRTTIG---VPEENDAFLDAAAEIIKL 367 (369)
T ss_dssp HHHHHHHHHTTEECBCCSC---------------------------T--TEEEEECC---CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCEEEEECCC---------------------------C--CeEEEEeC---CHHHHHHHHHHHHHHHhc
Confidence 6777777889999987610 1 28999998 789999999999988754
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=219.14 Aligned_cols=333 Identities=12% Similarity=0.054 Sum_probs=225.2
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
++.+||++...+..++.+++++.+.+.. + . ..|+. ....++++++++
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~~~--~--~---------------------------~~~~~--~~~~~~l~~~la 53 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHSSG--Q--A---------------------------GPYGT--DELTAQVKRKFC 53 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTTSS--C--C---------------------------CSTTC--SHHHHHHHHHHH
T ss_pred CceEeeccCCccCCCHHHHHHHHhhccC--c--c---------------------------ccccc--chHHHHHHHHHH
Confidence 4678898888888889999987654311 0 0 00111 456789999999
Q ss_pred HHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhc--CCEEEEEeccCCCCccCHHH
Q 037063 190 DFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKR--GARVSSAEFAWPNLRIHSGK 267 (588)
Q Consensus 190 ~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~--G~~v~~v~~~~~~~~i~~e~ 267 (588)
+++| . +.+|+||+|+|+|+.+++.++ .++||+|++....|...... ..++.. |++++.++.+ ++.+|+++
T Consensus 54 ~~~g-~--~~~v~~~~~gt~a~~~al~~~-~~~gd~vi~~~~~~~~~~~~--~~~~~~~~g~~~~~v~~~--~~~~d~~~ 125 (356)
T 1v72_A 54 EIFE-R--DVEVFLVPTGTAANALCLSAM-TPPWGNIYCHPASHINNDEC--GAPEFFSNGAKLMTVDGP--AAKLDIVR 125 (356)
T ss_dssp HHHT-S--CCEEEEESCHHHHHHHHHHTS-CCTTEEEEECTTSHHHHSST--THHHHHTTSCEEEECCCG--GGCCCHHH
T ss_pred HHhC-C--CCcEEEeCCccHHHHHHHHHh-cCCCCEEEEcCccchhhhhc--hHHHHHhCCcEEEEecCC--CCeEcHHH
Confidence 9999 3 235999999999999999998 78999977665443212111 013444 9999998875 46799999
Q ss_pred HHH-HHhhhccccCCCcceEEEEeCCCCCCCccCCH---HHH-HHHHHcCcEEEEeCCCcC------CCCCCCCCCCCCC
Q 037063 268 LMK-KIVGKRKKKKKKKRGLFVFPLQSKVTGARYSY---MWM-SVAAEKGWHVLLDATALG------SKDMDTLGLSLFK 336 (588)
Q Consensus 268 l~~-~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl---~~I-~~a~~~g~~vvvDaa~~~------~~d~~~l~l~~~~ 336 (588)
|++ +++.. .....+++++|++++++| ||..+|. ++| ++|+++|+++|+|+++.. +.....+++. ..
T Consensus 126 l~~~~i~~~-~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~-~~ 202 (356)
T 1v72_A 126 LRERTREKV-GDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWK-AG 202 (356)
T ss_dssp HHHHTTSST-TCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGG-GT
T ss_pred HHHHhhhcc-hhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhh-hc
Confidence 999 88610 001112689999999876 9997764 556 889999999999998742 2222222111 24
Q ss_pred CcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHH
Q 037063 337 PDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVE 416 (588)
Q Consensus 337 ~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al 416 (588)
+|++++|+||+ |. |.|+|++++++++++.+..... ..|+...... .+.
T Consensus 203 ~d~~~~s~sK~-g~-~~G~g~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~---~~~ 250 (356)
T 1v72_A 203 VDALSFGATKN-GV-LAAEAIVLFNTSLATEMSYRRK---------------------------RAGHLSSKMR---FLS 250 (356)
T ss_dssp CCEEEECCGGG-TC-SSCEEEEESSGGGHHHHHHHHH---------------------------HTTCCCSSTH---HHH
T ss_pred CCEEEEecccC-CC-cCccEEEEECHHHHhhHHHHhh---------------------------ccCchhhhHH---HHH
Confidence 89999999999 64 8888999988887765542210 0111111111 222
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHH
Q 037063 417 CKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKL 496 (588)
Q Consensus 417 ~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~ 496 (588)
..+++.+..-.+..+.++.+.+++++.+.|.++ ++++++.| ..+.++.+.+. ..+.+.
T Consensus 251 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---------~g~~~~~~----~~~~~~~~~~~---------~~~~~~ 308 (356)
T 1v72_A 251 AQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL---------GGVEVLGG----TEANILFCRLD---------SAMIDA 308 (356)
T ss_dssp HHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC---------TTEEEESC----CCSSEEEEEEC---------HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC---------CCcEEccC----CCccEEEEEcC---------HHHHHH
Confidence 234444433224567788889999999999874 56887765 24566655542 245666
Q ss_pred HHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 497 ADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 497 l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
|.++||.+++|.+ +.+.+|+++++.++.||++++++.|+++++.
T Consensus 309 l~~~gi~v~~g~~----------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 309 LLKAGFGFYHDRW----------------------------GPNVVRFVTSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp HHHTTCBCBCSSS----------------------------STTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred HHhcCeEEecccc----------------------------CCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 6788999987631 0128999999999999999999999998764
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.3e-24 Score=224.78 Aligned_cols=294 Identities=13% Similarity=0.082 Sum_probs=203.7
Q ss_pred HHHHHHHHHh----CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 183 KIRKRIMDFM----NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 183 ~~r~~ia~~l----ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++|+.+++++ |.+.+...|++|+|+|+|+.+++.++ +++||+|++ ...|++ . ...++..|++++.++.+
T Consensus 82 ~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l-~~~gd~Vl~~~~~~~~-~----~~~~~~~g~~~~~v~~~ 155 (406)
T 1xi9_A 82 ELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGAL-LDPGDEILVPGPSYPP-Y----TGLVKFYGGKPVEYRTI 155 (406)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCHH-H----HHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCCcc-H----HHHHHHcCCEEEEeecC
Confidence 5555555555 43333335999999999999999998 889999664 455553 2 34556789999999987
Q ss_pred C-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcCCC------C
Q 037063 258 W-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALGSK------D 326 (588)
Q Consensus 258 ~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~~------d 326 (588)
. .++.+|+++|+++++ +++++|++++++|+||..+| +++| ++|+++|+++|+|+++.... .
T Consensus 156 ~~~~~~~d~~~l~~~l~--------~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 227 (406)
T 1xi9_A 156 EEEDWQPDIDDIRKKIT--------DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHIS 227 (406)
T ss_dssp GGGTSEECHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCC
T ss_pred CCcCCcCCHHHHHHhhC--------cCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCC
Confidence 3 245689999999997 57899999999999999998 7777 89999999999999976531 1
Q ss_pred CCCCCCCCCCC-cEEEeccCccCCCCCCc--eEEEE--EeC----cchhcccCCCCCCCceEeeecCCCccccccccccc
Q 037063 327 MDTLGLSLFKP-DFLICSFYKIFGENPSG--FGCLF--VKK----SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDES 397 (588)
Q Consensus 327 ~~~l~l~~~~~-D~vv~S~~K~~G~~P~G--~G~L~--v~~----~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~ 397 (588)
+..++ ... |+++.|++|++| +.| +|+++ .++ ++++.+.....
T Consensus 228 ~~~~~---~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~------------------------ 278 (406)
T 1xi9_A 228 PGSLT---KDVPVIVMNGLSKVYF--ATGWRLGYMYFVDPENKLSEVREAIDRLAR------------------------ 278 (406)
T ss_dssp HHHHC---SSSCEEEEEESTTTTC--CGGGCCEEEEEECTTCTTHHHHHHHHHHHH------------------------
T ss_pred HHHcC---CCceEEEEeccccccC--CCccEEEEEEEecCchhHHHHHHHHHHHHH------------------------
Confidence 11111 235 889999999998 446 89999 777 66655432110
Q ss_pred ccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE
Q 037063 398 SQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA 477 (588)
Q Consensus 398 ~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~ 477 (588)
+ . ++.+.... +++.++|+...+ +++++.++.+.+++++.+.|.++ |+++++.| .++++.
T Consensus 279 -~-~-~~~~~~~~---~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~~-----~~~~~~ 337 (406)
T 1xi9_A 279 -I-R-LCPNTPAQ---FAAIAGLTGPMD-YLKEYMKKLKERRDYIYKRLNEI---------PGISTTKP-----QGAFYI 337 (406)
T ss_dssp -H-T-CCSCSHHH---HHHHHHHHSCCH-HHHHHHHHHHHHHHHHHHHHHTS---------TTEECCCC-----CBSSEE
T ss_pred -h-h-cCCCHHHH---HHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHHHhC---------CCCeeecC-----CeeEEE
Confidence 0 1 12222221 344455542212 26778888899999999999874 56776543 244444
Q ss_pred E-EeecCCCCCcCHHHHHHHH-HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHH
Q 037063 478 F-NVFDWNGTRIDPALVQKLA-DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDT 555 (588)
Q Consensus 478 f-~~~~~~g~~i~~~~v~~~l-~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv 555 (588)
+ .+....+ .+...+.+.| +++||.+++|..|.. .+..+||+|++ ++.|||
T Consensus 338 ~~~~~~~~~--~~~~~l~~~l~~~~gi~v~~g~~f~~------------------------~~~~~lRis~~--~~~~~i 389 (406)
T 1xi9_A 338 FPKIEVGPW--KNDKEFVLDVLHNAHVLFVHGSGFGE------------------------YGAGHFRAVFL--PPIEIL 389 (406)
T ss_dssp CCEECSCSC--SSHHHHHHHHHHHHCEECEEGGGGCG------------------------GGTTBEEEECC--SCHHHH
T ss_pred EEecCccCC--CCHHHHHHHHHHhCCEEEeCchhcCC------------------------CCCCEEEEEec--CCHHHH
Confidence 3 4432101 3466665554 589999998865521 11128999998 899999
Q ss_pred HHHHHHHHHhhhh
Q 037063 556 YRLWAFVSRFLDA 568 (588)
Q Consensus 556 ~~li~~l~~~l~~ 568 (588)
+++++.|++++++
T Consensus 390 ~~~~~~l~~~l~~ 402 (406)
T 1xi9_A 390 EEAMDRFEKFMKE 402 (406)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998865
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-24 Score=225.46 Aligned_cols=289 Identities=16% Similarity=0.127 Sum_probs=201.2
Q ss_pred HHHHHHHHHh----CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 183 KIRKRIMDFM----NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 183 ~~r~~ia~~l----ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++|+.+++++ |++.+...|++|+|+|+|+.+++.++ +++||+|+ ....|++ . ...++..|++++.++.+
T Consensus 82 ~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l-~~~gd~Vl~~~~~~~~-~----~~~~~~~g~~~~~v~~~ 155 (389)
T 1o4s_A 82 ELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMAL-LDPGDEVIVFSPVWVS-Y----IPQIILAGGTVNVVETF 155 (389)
T ss_dssp HHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT-H----HHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHh-CCCCCEEEEcCCCchh-H----HHHHHHcCCEEEEEecC
Confidence 5666666665 76322235999999999999999999 88999966 4555654 2 23456789999999987
Q ss_pred CC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcCCCC-CCCC-
Q 037063 258 WP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALGSKD-MDTL- 330 (588)
Q Consensus 258 ~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~~d-~~~l- 330 (588)
.. ++.+|+++|+++++ +++++|++++++|+||..+| +++| ++|+++|+++|+|+++..... -...
T Consensus 156 ~~~~~~~d~~~l~~~l~--------~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~ 227 (389)
T 1o4s_A 156 MSKNFQPSLEEVEGLLV--------GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTS 227 (389)
T ss_dssp GGGTTCCCHHHHHHTCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCC
T ss_pred CccCCCCCHHHHHHhcc--------cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Confidence 32 45689999999887 57899999999999999999 7778 899999999999999765411 0011
Q ss_pred --CCC-CCCCcEEEeccCccCCCCCCc--eEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 331 --GLS-LFKPDFLICSFYKIFGENPSG--FGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 331 --~l~-~~~~D~vv~S~~K~~G~~P~G--~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
.+. ..+.|+++.|++|++| +.| +|++++++++++.+.....++ ..+++
T Consensus 228 ~~~~~~~~~~~i~~~s~sK~~~--~~G~r~G~l~~~~~~~~~l~~~~~~~-------------------------~~~~~ 280 (389)
T 1o4s_A 228 ILDVSEGFDRIVYINGFSKSHS--MTGWRVGYLISSEKVATAVSKIQSHT-------------------------TSCIN 280 (389)
T ss_dssp HHHHCSSSTTEEEEEESTTTTT--CGGGCCEEEECCHHHHHHHHHHHHHH-------------------------TCSCC
T ss_pred HhhcCCCCCcEEEEeechhhcC--CcccceEEEEeCHHHHHHHHHHhhhc-------------------------ccCCC
Confidence 111 1357999999999998 446 899999988776654332110 00111
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCC
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNG 485 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g 485 (588)
.+ +...++..++. +++++.++++.+++++.+.|.++ +++++.| ..+.++.+.+.
T Consensus 281 ~~-------~~~a~~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~----~~~~~~~~~~~---- 334 (389)
T 1o4s_A 281 TV-------AQYAALKALEV-DNSYMVQTFKERKNFVVERLKKM----------GVKFVEP----EGAFYLFFKVR---- 334 (389)
T ss_dssp HH-------HHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHT----------TCCCCCC----SBSSEEEEECS----
T ss_pred HH-------HHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhc----------CCeeecC----CcceEEEEeCC----
Confidence 11 11123333332 46888899999999999999885 2333333 12334444443
Q ss_pred CCcCHHHHHHHH-HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 486 TRIDPALVQKLA-DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 486 ~~i~~~~v~~~l-~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
.+...+.+.| +++||.++.|..|.. .+ +||+|++ ++.+|++++++.|.+
T Consensus 335 --~~~~~l~~~l~~~~gi~v~~g~~f~~------------------------~~--~~Ris~~--~~~~~l~~~l~~l~~ 384 (389)
T 1o4s_A 335 --GDDVKFCERLLEEKKVALVPGSAFLK------------------------PG--FVRLSFA--TSIERLTEALDRIED 384 (389)
T ss_dssp --SCHHHHHHHHHHHHCEECEEGGGGTC------------------------TT--EEEEECC--SCHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHCCEEEeCchhcCC------------------------CC--eEEEEEe--CCHHHHHHHHHHHHH
Confidence 2356666555 588999998854410 12 8999998 499999999999998
Q ss_pred hhhh
Q 037063 565 FLDA 568 (588)
Q Consensus 565 ~l~~ 568 (588)
++++
T Consensus 385 ~l~~ 388 (389)
T 1o4s_A 385 FLNS 388 (389)
T ss_dssp HHTC
T ss_pred HHhc
Confidence 7753
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-23 Score=219.76 Aligned_cols=306 Identities=14% Similarity=0.101 Sum_probs=207.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.....++|++|+++++++ +.|+|++| |+|+.+++.++ +++||+|+ ....|++ .+..+...++..|++++.++.
T Consensus 51 ~~~~~~l~~~la~~~~~~---~~i~~~sG-t~a~~~~~~~~-~~~g~~vl~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~ 124 (386)
T 1cs1_A 51 NPTRDVVQRALAELEGGA---GAVLTNTG-MSAIHLVTTVF-LKPGDLLVAPHDCYGG-SYRLFDSLAKRGCYRVLFVDQ 124 (386)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSH-HHHHHHHHHHH-CCTTCEEEEETTCCHH-HHHHHHHHHTTTSCEEEEECT
T ss_pred CccHHHHHHHHHHHhCCC---cEEEeCCH-HHHHHHHHHHH-hCCCCEEEEecCCcHh-HHHHHHHHHHhcCCEEEEeCC
Confidence 466789999999999985 34666555 99999999998 88999966 4556665 444445566788999999876
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ |.++|+++|+ +++++|++++++|+||.+.|+++| ++|+++|+++|+|+++..+....++ .+
T Consensus 125 ~------d~~~l~~~i~--------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~---~~ 187 (386)
T 1cs1_A 125 G------DEQALRAALA--------EKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL---AL 187 (386)
T ss_dssp T------CHHHHHHHHH--------TCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG---GG
T ss_pred C------CHHHHHHhhc--------cCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCcc---cc
Confidence 3 7899999998 689999999999999999999999 9999999999999998876321222 24
Q ss_pred CCcEEEeccCccCCCCCCce--EEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhh
Q 037063 336 KPDFLICSFYKIFGENPSGF--GCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSS 412 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~--G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~ 412 (588)
++|+++.|+||++|. |.+. |++++++ ++++.+.+...++ .++.+....
T Consensus 188 ~~di~~~s~sK~~~~-~~~~~~G~~~~~~~~l~~~l~~~~~~~--------------------------~~~~~~~~~-- 238 (386)
T 1cs1_A 188 GADLVLHSCTKYLNG-HSDVVAGVVIAKDPDVVTELAWWANNI--------------------------GVTGGAFDS-- 238 (386)
T ss_dssp TCSEEEEETTTTTTC-SSCCCCEEEEESSHHHHHHHHHHHHHH--------------------------TCBCCHHHH--
T ss_pred CceEEEEcCcccccC-CCCceeEEEEeCcHHHHHHHHHHHHhc--------------------------CCCCCHHHH--
Confidence 589999999998874 6553 9999987 6766665332110 111221111
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEE-EeCCCC------------CCCcccEEEEE
Q 037063 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVR-IYGPKV------------MFDRGPSLAFN 479 (588)
Q Consensus 413 ~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~-i~~p~~------------~~~rg~iv~f~ 479 (588)
++...+++. ++...++....++++.+.|.++ +.++ ++.+.- ....+++++|.
T Consensus 239 -~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~---------~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 303 (386)
T 1cs1_A 239 -YLLLRGLRT-----LVPRMELAQRNAQAIVKYLQTQ---------PLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFE 303 (386)
T ss_dssp -HHHHHHHTT-----HHHHHHHHHHHHHHHHHHHTTC---------TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE
T ss_pred -HHHHhcccH-----HHHHHHHHHHHHHHHHHHHhcC---------CCeEEEECCCCCCCccHHHHHHhcCCCceEEEEE
Confidence 122233432 2334445555666666777664 2232 222210 01357899998
Q ss_pred eecCCCCCcCHHHHHHHHHhCCcEecc---c------cccCccc-ccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC
Q 037063 480 VFDWNGTRIDPALVQKLADRHNISLSC---G------FLQNIFF-SGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL 549 (588)
Q Consensus 480 ~~~~~g~~i~~~~v~~~l~~~gI~v~~---G------~~c~~~~-~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~ 549 (588)
+.+ . .+.+.+.|.+.||.++. | ++|.... +... ...+... | ...+.||+|++..
T Consensus 304 ~~~-----~-~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~----~~~~~~~---g---~~~~~iRis~~~~ 367 (386)
T 1cs1_A 304 LDG-----D-EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMA----PEARAAA---G---ISETLLRISTGIE 367 (386)
T ss_dssp ESS-----C-HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSC----HHHHHHH---T---CCTTEEEEECCSS
T ss_pred ECC-----C-HHHHHHHHHhCCcceEcccCCCcceeeecccccccccCC----HHHHHhc---C---CCCCeEEEEEccC
Confidence 764 2 56788889999999873 4 3443211 0000 0011110 0 1123999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 037063 550 TNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 550 ~t~eDv~~li~~l~~~l 566 (588)
++.++|+++.++|+++.
T Consensus 368 ~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 368 DGEDLIADLENGFRAAN 384 (386)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999998764
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-24 Score=227.82 Aligned_cols=350 Identities=11% Similarity=0.008 Sum_probs=221.7
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
....|.|+.+.+..-+.+.+++. . +.++++ ...|+....+..+++|++++
T Consensus 25 ~~~~~~d~~~~~~~~~~~~~~~~-~-----~~~~~~------------------------~~~~~~~~~~~~~~l~~~la 74 (398)
T 2rfv_A 25 GALSTPIFQTSTFVFDSAEQGAA-R-----FALEES------------------------GYIYTRLGNPTTDALEKKLA 74 (398)
T ss_dssp CCSSCCCCCCSBCCCSSHHHHHH-H-----C-----------------------------CCSBTTTCCHHHHHHHHHHH
T ss_pred CCcCCCCcCCCccccCCHHHHHH-h-----hcCCCC------------------------CCceeCCCChHHHHHHHHHH
Confidence 35788999999988877777653 1 122211 00112112567789999999
Q ss_pred HHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHH
Q 037063 190 DFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKL 268 (588)
Q Consensus 190 ~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l 268 (588)
+++|++ .+++++++++|+.+++.++ +++||+|++ ...|++ ....+..+++..|++++.++.+ |.++|
T Consensus 75 ~~~g~~----~~i~~~sG~~a~~~~l~~~-~~~gd~vi~~~~~~~~-~~~~~~~~~~~~g~~~~~v~~~------d~~~l 142 (398)
T 2rfv_A 75 VLERGE----AGLATASGISAITTTLLTL-CQQGDHIVSASAIYGC-THAFLSHSMPKFGINVRFVDAA------KPEEI 142 (398)
T ss_dssp HHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESSSCHH-HHHHHHTHHHHTTCEEEEECTT------SHHHH
T ss_pred HHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEcCCCccc-HHHHHHHHHHHcCCEEEEeCCC------CHHHH
Confidence 999985 2666677789999999998 889999664 555654 3333344557789999999874 78999
Q ss_pred HHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCcc
Q 037063 269 MKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKI 347 (588)
Q Consensus 269 ~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~ 347 (588)
+++++ +++++|++++++|+||.++|+++| ++|+++|+++|+|+++..+.....+. +++|+++.|+||+
T Consensus 143 ~~~i~--------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~---~~~di~~~s~sK~ 211 (398)
T 2rfv_A 143 RAAMR--------PETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQ---LGADIVVHSVTKY 211 (398)
T ss_dssp HHHCC--------TTEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGG---GTCSEEEEETTTT
T ss_pred HHhcC--------CCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCchh---hCCcEEEEeCccc
Confidence 99887 689999999999999999999999 99999999999999988663112222 3489999999998
Q ss_pred CCCCCCc--eEEEEEeCcchh-cccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHH
Q 037063 348 FGENPSG--FGCLFVKKSSAS-VLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHAD 424 (588)
Q Consensus 348 ~G~~P~G--~G~L~v~~~~~~-~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~ 424 (588)
+|. |.+ .|+++++++.++ .+++...+ + +.++.+.... +++.++++.+
T Consensus 212 ~~~-~g~~~~G~~~~~~~~~~~~~~~~~~~------------------------~-~~~~~~~~~~---~~~~~~l~~~- 261 (398)
T 2rfv_A 212 ING-HGDVIGGIIVGKQEFIDQARFVGLKD------------------------I-TGGCMSPFNA---WLTLRGVKTL- 261 (398)
T ss_dssp TTC-SSCCCCEEEEECHHHHHHHHHTHHHH------------------------T-TCCCCCHHHH---HHHHHHHTTH-
T ss_pred ccC-CCCceEEEEEECHHHHHHHHHHHHHh------------------------C-CCCCCCHHHH---HHHHhhhhhH-
Confidence 874 554 599999988765 44432211 0 0122332221 3333455433
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHHccc------CCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHH
Q 037063 425 ALGLILISNRARYLINWLANALMNLH------HPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLAD 498 (588)
Q Consensus 425 ~~G~~~i~~r~~~L~~~l~~~L~~L~------h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~ 498 (588)
+...++....++.+.+.|.+.. ++.-+ ..|+++++.|.. ...++++.|.+.+ . .....++++
T Consensus 262 ----~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~-~~p~~~~~~~~~-~~~g~~~~~~~~~-----~-~~~~~~l~~ 329 (398)
T 2rfv_A 262 ----GIRMERHCENALKIARFLEGHPSITRVYYPGLS-SHPQYELGQRQM-SLPGGIISFEIAG-----G-LEAGRRMIN 329 (398)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTST-TSTTHHHHHHHC-SSCCSEEEEEETT-----H-HHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCC-CCccHHHHHhhC-CCCceEEEEEEcC-----C-HHHHHHHHH
Confidence 2223333444555555565531 00000 012333333211 1357899998764 1 234555665
Q ss_pred hC---CcEeccccc------cCcccccchHHHHHHHHhhhcCCCCCcCC--ccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 499 RH---NISLSCGFL------QNIFFSGEYEQERVRVLETRSGTNETRSG--VSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 499 ~~---gI~v~~G~~------c~~~~~~~~~~~~~~~l~~~~~~~~~~~g--~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
+. ||.++.|.. |......... ...+.. .| .+.||+|++..++.++|++++++|++.
T Consensus 330 ~~~~~~i~~~~G~~~~li~~~~~~~~~~~~---~~~~~~--------~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 330 SVELCLLAVSLGDTETLIQHPASMTHSPVA---PEERLK--------AGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp TCSSSEECSCCSSSSCEEECHHHHTSSSSC---HHHHHH--------TTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred hCCcceeccCCCCcceeeecccccccccCC---HHHHHh--------cCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 54 777777743 3211000000 011111 23 249999999999999999999998763
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.2e-23 Score=215.58 Aligned_cols=327 Identities=10% Similarity=0.022 Sum_probs=218.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....++|+.+++++|.+ .+++|+|+|+|+.+++.++.+++||+|+ ....|++ . ...++..|++++.++++
T Consensus 39 ~~~~~l~~~la~~~~~~----~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~-~----~~~~~~~g~~~~~v~~~ 109 (393)
T 1mdo_A 39 PKNQELEAAFCRLTGNQ----YAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVS-T----LNMIVLLGANPVMVDVD 109 (393)
T ss_dssp HHHHHHHHHHHHHHCCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHH-H----HHHHHHTTCEEEEECBC
T ss_pred hHHHHHHHHHHHHhCCC----cEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHh-H----HHHHHHCCCEEEEEecc
Confidence 45679999999999984 3999999999999999998778999966 4556654 2 23456789999999998
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC--CCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK--DMDTLGLSL 334 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~--d~~~l~l~~ 334 (588)
..++.+|+++|+++|+ +++++|+++ |++|...|+++| ++|+++|+++|+|+++..+. +..+++.
T Consensus 110 ~~~~~~d~~~l~~~l~--------~~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~-- 176 (393)
T 1mdo_A 110 RDTLMVTPEHIEAAIT--------PQTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGA-- 176 (393)
T ss_dssp TTTCCBCHHHHHHHCC--------TTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTS--
T ss_pred CCcCCCCHHHHHHhcC--------CCceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecCC--
Confidence 4446799999999997 578888875 479999999999 99999999999999988651 1222321
Q ss_pred CCCcEEEeccC--ccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccc--cCCC-CCcc
Q 037063 335 FKPDFLICSFY--KIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS--KFPE-SSIS 408 (588)
Q Consensus 335 ~~~D~vv~S~~--K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~--e~GT-~~~~ 408 (588)
.|++++|+| |+++ +...|+++.+ +++++.+.+....+ +..+... . .....+ ..|+ +.|+ ..+.
T Consensus 177 --~d~~~~S~~k~K~l~--~~~~g~~~~~~~~~~~~l~~~~~~~-~~~~~~~----~-~~~~~~-~~~~~~~~g~~~~~~ 245 (393)
T 1mdo_A 177 --RGTAIFSFHAIKNIT--CAEGGIVVTDNPQFADKLRSLKFHG-LGVDAWD----R-QSGGRA-PQAEVLAPGYKYNLP 245 (393)
T ss_dssp --SSEEEEECCTTSSSC--SSSCEEEEESCHHHHHHHHHHTBTT-EECC-----------------CCEESSCCCBCCCC
T ss_pred --CCeEEEeCCCCCccc--cccceEEEeCCHHHHHHHHHHHhcC-Ccccchh----h-hccccc-ccccccccCccCCCC
Confidence 799999999 8777 4357888886 56777665433221 1111000 0 000000 0221 2333 2223
Q ss_pred chhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCC--CCCcccEEEEEeecC-CC
Q 037063 409 GVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKV--MFDRGPSLAFNVFDW-NG 485 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~--~~~rg~iv~f~~~~~-~g 485 (588)
.+ ....++..++ +++++.++.+.+++++.+.|.++ + ++++++.. ....+.++.+.+.+. .|
T Consensus 246 ~~----~~a~~~~~l~--~~~~~~~~~~~~~~~l~~~L~~~---------~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 309 (393)
T 1mdo_A 246 DL----NAAIALAQLQ--KLDALNARRAAIAAQYHQAMADL---------P-FQPLSLPSWEHIHAWHLFIIRVDEARCG 309 (393)
T ss_dssp HH----HHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHTS---------S-CEECCCCSSCEECCCSCEEEECCHHHHS
T ss_pred HH----HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcC---------C-cccccCCCCCCCceeEEEEEEecccccc
Confidence 22 1123333343 36788888889999999999884 4 66664321 112234677776520 01
Q ss_pred CCcCHHHHHHHHHhCCcEeccccccCcccccchHH-------HHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHH
Q 037063 486 TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQ-------ERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRL 558 (588)
Q Consensus 486 ~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~-------~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~l 558 (588)
++...+.+.|.++||.++.|..|.+... .+.. .....+ +...||++++.++|.+||+++
T Consensus 310 --~~~~~l~~~l~~~gi~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~lRi~~~~~~t~~~i~~~ 375 (393)
T 1mdo_A 310 --ITRDALMASLKTKGIGTGLHFRAAHTQK-YYRERFPTLTLPDTEWN-----------SERICSLPLFPDMTESDFDRV 375 (393)
T ss_dssp --SCHHHHHHHHHHTTBCCBCCCCCGGGSH-HHHHHSTTCCCHHHHHH-----------HTTEEEECCCTTCCHHHHHHH
T ss_pred --cCHHHHHHHHHhCCCCcccccCccccCh-hhhccCCccCChhHHHH-----------HhCEEEecCCCCCCHHHHHHH
Confidence 4577888888889999999876632110 0000 000000 112899999999999999999
Q ss_pred HHHHHHhhhh
Q 037063 559 WAFVSRFLDA 568 (588)
Q Consensus 559 i~~l~~~l~~ 568 (588)
++.|+++++.
T Consensus 376 ~~~l~~~~~~ 385 (393)
T 1mdo_A 376 ITALHQIAGQ 385 (393)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhc
Confidence 9999988765
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=230.07 Aligned_cols=301 Identities=14% Similarity=0.124 Sum_probs=209.8
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
.++|+.+++++|+++++ |++|+|+++|+.+++.++ .++||+|++. ..|++ . ...++..|++++.++.+ ++
T Consensus 77 ~~l~~~la~~~g~~~~~--v~~~~g~~~al~~~~~~~-~~~gd~Vl~~~p~y~~-~----~~~~~~~g~~~~~~~~~-~~ 147 (397)
T 2zyj_A 77 APLRAFVAEWIGVRPEE--VLITTGSQQALDLVGKVF-LDEGSPVLLEAPSYMG-A----IQAFRLQGPRFLTVPAG-EE 147 (397)
T ss_dssp HHHHHHHHHHHTSCGGG--EEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCHH-H----HHHHHTTCCEEEEEEEE-TT
T ss_pred HHHHHHHHHHhCCChhh--EEEeccHHHHHHHHHHHh-CCCCCEEEEeCCCcHH-H----HHHHHHcCCEEEecCcC-CC
Confidence 58999999999986654 999999999999999998 7899997654 44543 2 34556789999999987 44
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEE-EEeCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCCCcCCC-CCC-CCCCC
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLF-VFPLQSKVTGARYSYM---WM-SVAAEKGWHVLLDATALGSK-DMD-TLGLS 333 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv-~~~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa~~~~~-d~~-~l~l~ 333 (588)
+ +|+++|+++++. .++++| ++++++|+||..+|.+ +| ++|+++|+++|+|+++.... +-. ...+.
T Consensus 148 ~-~d~~~l~~~l~~-------~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~ 219 (397)
T 2zyj_A 148 G-PDLDALEEVLKR-------ERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLF 219 (397)
T ss_dssp E-ECHHHHHHHHHH-------CCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHH
T ss_pred C-CCHHHHHHHHhh-------cCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchh
Confidence 4 899999999972 267776 6799999999999977 56 88999999999999976531 001 11111
Q ss_pred CC------CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCc
Q 037063 334 LF------KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407 (588)
Q Consensus 334 ~~------~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~ 407 (588)
.+ ..++++.|++|++| +..++|++++++++++.+...... + ..+++.+
T Consensus 220 ~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~~------------------------~-~~~~~~~ 273 (397)
T 2zyj_A 220 ELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQG------------------------A-DLHTPML 273 (397)
T ss_dssp HHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCHHHHHHHHHHHHH------------------------H-HSSCCHH
T ss_pred hhCcccCCCeEEEEeccccccc-ccceeEEEecCHHHHHHHHHHHHh------------------------h-cCCCCHH
Confidence 11 23488999999998 345689999998877666432211 0 1122221
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC-eEEEeCCCCCCCcccEEEEEeecCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIP-LVRIYGPKVMFDRGPSLAFNVFDWNGT 486 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~-~v~i~~p~~~~~rg~iv~f~~~~~~g~ 486 (588)
.. +++..+|+......++++.++.+++++++.+.|.++ .| +++++.| ..+.++.+.+.+ +
T Consensus 274 ~~----~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--------~~~g~~~~~~----~~g~~~~~~~~~--~- 334 (397)
T 2zyj_A 274 NQ----MLVHELLKEGFSERLERVRRVYREKAQAMLHALDRE--------VPKEVRYTRP----KGGMFVWMELPK--G- 334 (397)
T ss_dssp HH----HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH--------SCTTSEECCC----SBSSEEEEECST--T-
T ss_pred HH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCCeEEccC----CccEEEEEEcCC--C-
Confidence 11 233344432110125677788888888999988873 24 4666554 235666666653 1
Q ss_pred CcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 487 RIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 487 ~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
++...+.+.|.++||.+++|..|... ..+.++||+|++.. +.+||+++++.|++++
T Consensus 335 -~~~~~~~~~l~~~gi~v~~g~~f~~~----------------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l 390 (397)
T 2zyj_A 335 -LSAEGLFRRALEENVAFVPGGPFFAN----------------------GGGENTLRLSYATL-DREGIAEGVRRLGRAL 390 (397)
T ss_dssp -CCHHHHHHHHHHTTEEEEESGGGCTT----------------------SCCTTEEEEECSSS-CHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHCCCEEechHHhcCC----------------------CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHH
Confidence 45677777777779999988655210 01223899999986 8999999999999987
Q ss_pred hh
Q 037063 567 DA 568 (588)
Q Consensus 567 ~~ 568 (588)
++
T Consensus 391 ~~ 392 (397)
T 2zyj_A 391 KG 392 (397)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-23 Score=218.89 Aligned_cols=292 Identities=14% Similarity=0.096 Sum_probs=198.6
Q ss_pred HHHHHHHHHh----CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 183 KIRKRIMDFM----NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 183 ~~r~~ia~~l----ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++|+.|++++ |++.+...|++|+|+|+|+.+++.++ +++||+|++ ...|+. + ...++..|++++.++.+
T Consensus 72 ~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vlv~~p~y~~--~---~~~~~~~g~~~~~v~~~ 145 (385)
T 1b5p_A 72 ELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAI-LDPGDEVIVLSPYWVS--Y---PEMVRFAGGVVVEVETL 145 (385)
T ss_dssp HHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTH--H---HHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHh-cCCCCEEEEcCCCchh--H---HHHHHHcCCEEEEeecC
Confidence 5566666655 54322335999999999999999999 899999664 445543 2 34556789999999997
Q ss_pred C-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcCC-CC--CCC
Q 037063 258 W-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALGS-KD--MDT 329 (588)
Q Consensus 258 ~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~-~d--~~~ 329 (588)
. .+..+|+++|+++++ +++++|++++++|+||..+| +++| ++|+++|++||+|+++... .+ ..+
T Consensus 146 ~~~~~~~d~~~l~~~l~--------~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~ 217 (385)
T 1b5p_A 146 PEEGFVPDPERVRRAIT--------PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFS 217 (385)
T ss_dssp GGGTTCCCHHHHHTTCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCC
T ss_pred cccCCCCCHHHHHHhcC--------CCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCC
Confidence 4 245689999998887 67899999999999999999 5667 8899999999999995542 10 111
Q ss_pred -CCCCCCCCcEEEeccCccCCCCCCc--eEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 330 -LGLSLFKPDFLICSFYKIFGENPSG--FGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 330 -l~l~~~~~D~vv~S~~K~~G~~P~G--~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
..+.. ..++++.|++|.+| +.| +|++++++++++.+.+....+ ..+++.
T Consensus 218 ~~~~~~-~~~i~~~s~SK~~~--~~G~RiG~~~~~~~~~~~l~~~~~~~-------------------------~~~~~~ 269 (385)
T 1b5p_A 218 PGRVAP-EHTLTVNGAAKAFA--MTGWRIGYACGPKEVIKAMASVSRQS-------------------------TTSPDT 269 (385)
T ss_dssp GGGTCT-TTEEEEEESTTTTT--CGGGCCEEEECCHHHHHHHHHHHHTT-------------------------TCSCCH
T ss_pred HHHcCC-CCEEEEEechhhcC--CcccceEEEEeCHHHHHHHHHHHhhc-------------------------cCCCCH
Confidence 11211 36899999999999 446 999999888776654322110 001111
Q ss_pred ccchhhHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc-EEEEEeec
Q 037063 407 ISGVSSKLVECKGLDH---ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP-SLAFNVFD 482 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~---l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~-iv~f~~~~ 482 (588)
+.+ .++..+|+. ... .++++.++.++.++++.+.|.++ +++++.| .++ .+...+..
T Consensus 270 ~~~----~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~-----~~~~~~~~~~~~ 329 (385)
T 1b5p_A 270 IAQ----WATLEALTNQEASRA-FVEMAREAYRRRRDLLLEGLTAL----------GLKAVRP-----SGAFYVLMDTSP 329 (385)
T ss_dssp HHH----HHHHHHHHCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----------TCCBCCC-----SBTTEEEEECTT
T ss_pred HHH----HHHHHHHhCCCcchH-HHHHHHHHHHHHHHHHHHHHHHC----------CCeecCC-----CeeEEEEEecCC
Confidence 111 233345542 122 15777888888889999998874 2334433 233 33334431
Q ss_pred CCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHH
Q 037063 483 WNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 483 ~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l 562 (588)
.| ++...+.+.|.++||.++.|..|.. . ++||+|++ ++.++++++++.|
T Consensus 330 -~~--~~~~~l~~~l~~~gv~v~~g~~f~~------------------------~--~~iRis~~--~~~~~i~~~l~~l 378 (385)
T 1b5p_A 330 -IA--PDEVRAAERLLEAGVAVVPGTDFAA------------------------F--GHVRLSYA--TSEENLRKALERF 378 (385)
T ss_dssp -TC--SSHHHHHHHHHHTTEECEESGGGTC------------------------T--TEEEEECC--SCHHHHHHHHHHG
T ss_pred -CC--CCHHHHHHHHHHCCeEEecccccCC------------------------C--CeEEEEec--CCHHHHHHHHHHH
Confidence 11 4566776666689999998865520 1 28999987 7999999999998
Q ss_pred HHhhh
Q 037063 563 SRFLD 567 (588)
Q Consensus 563 ~~~l~ 567 (588)
+++++
T Consensus 379 ~~~l~ 383 (385)
T 1b5p_A 379 ARVLG 383 (385)
T ss_dssp GGGC-
T ss_pred HHHHh
Confidence 87764
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=223.87 Aligned_cols=304 Identities=11% Similarity=0.026 Sum_probs=207.8
Q ss_pred HHHHHHHHHHhC------------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcC
Q 037063 182 SKIRKRIMDFMN------------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRG 248 (588)
Q Consensus 182 ~~~r~~ia~~lg------------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G 248 (588)
.++|+.|+++++ +++++ |++|+|+|+|+.+++.++ +++||+|++ ...|++ . ...++..|
T Consensus 78 ~~lr~~la~~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~al~~~~~~l-~~~gd~vl~~~p~y~~-~----~~~~~~~g 149 (416)
T 1bw0_A 78 PEAREAVATWWRNSFVHKEELKSTIVKDN--VVLCSGGSHGILMAITAI-CDAGDYALVPQPGFPH-Y----ETVCKAYG 149 (416)
T ss_dssp HHHHHHHHHHHHHHHCCSTTTGGGCCGGG--EEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTH-H----HHHHHHTT
T ss_pred HHHHHHHHHHHHhhhcccccCCCCCCcce--EEEeCChHHHHHHHHHHh-CCCCCEEEEcCCCcHh-H----HHHHHHcC
Confidence 478888888887 55554 999999999999999999 889999664 455653 2 34556789
Q ss_pred CEEEEEeccCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcC
Q 037063 249 ARVSSAEFAWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALG 323 (588)
Q Consensus 249 ~~v~~v~~~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~ 323 (588)
++++.++++.. ++.+|+++|+++++ +++++|++++++|+||.++| +++| ++|+++|++||+|+++..
T Consensus 150 ~~~~~v~~~~~~~~~~d~~~l~~~l~--------~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~ 221 (416)
T 1bw0_A 150 IGMHFYNCRPENDWEADLDEIRRLKD--------DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAG 221 (416)
T ss_dssp CEEEEEEEEGGGTTEECHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTT
T ss_pred cEEEEeecCcccCCCCCHHHHHHHhc--------cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence 99999998632 35689999999987 67899999999999999999 7778 899999999999999654
Q ss_pred C----C----CCCCC-CCCCCCCcEEEeccCccCCCCCCceEEEEEeCc--chhcccCCCCCCCceEeeecCCCcccccc
Q 037063 324 S----K----DMDTL-GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKS--SASVLSGSTSSVSTIMGIEPSFSEIIELE 392 (588)
Q Consensus 324 ~----~----d~~~l-~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~--~~~~l~~~~~g~~g~v~~~~~~~~~~~~~ 392 (588)
. . ...++ .+.....++++.|++|.||.+..++|+++++++ +++.+...... +
T Consensus 222 ~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~----------------~- 284 (416)
T 1bw0_A 222 MVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKR----------------V- 284 (416)
T ss_dssp CBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHH----------------H-
T ss_pred cccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHH----------------H-
Confidence 2 1 11111 122222357888999988742234899999874 44433211000 0
Q ss_pred cccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc
Q 037063 393 TLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR 472 (588)
Q Consensus 393 ~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r 472 (588)
.. ..++.+.... +++..+|+.....+++++.++++.+++++.+.|.++ ++++++.| ..
T Consensus 285 -----~~-~~~~~~~~~~---~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------~g~~~~~~----~~ 342 (416)
T 1bw0_A 285 -----GM-LVCGPCTVVQ---AALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGEC---------IGLAPTMP----RG 342 (416)
T ss_dssp -----HH-HHTCSCHHHH---HHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTS---------TTEEECCC----CB
T ss_pred -----hc-cccCCCcHHH---HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC---------CCCcccCC----Ce
Confidence 00 0112232222 444455553222246788889999999999999874 56777654 23
Q ss_pred ccEEEEEeecCC-CCCcCHHHHHH-HHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC
Q 037063 473 GPSLAFNVFDWN-GTRIDPALVQK-LADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT 550 (588)
Q Consensus 473 g~iv~f~~~~~~-g~~i~~~~v~~-~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~ 550 (588)
+.++.+.+.... ....+...+.+ +++++||.+++|..|. ..+++|+|++ +
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~--------------------------~~~~iRis~~--~ 394 (416)
T 1bw0_A 343 AMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH--------------------------APGFTRLTTT--R 394 (416)
T ss_dssp TTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT--------------------------CTTEEEEECC--S
T ss_pred eEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccC--------------------------CCCeEEEEec--C
Confidence 555666664210 00123555544 5578999999885541 1128999996 6
Q ss_pred CHHHHHHHHHHHHHhhhh
Q 037063 551 NFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 551 t~eDv~~li~~l~~~l~~ 568 (588)
+.|+++++++.|.+++++
T Consensus 395 ~~e~l~~~l~~l~~~l~~ 412 (416)
T 1bw0_A 395 PVEVYREAVERIKAFCQR 412 (416)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 899999999999988765
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=218.45 Aligned_cols=286 Identities=11% Similarity=0.053 Sum_probs=200.2
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCC-CeEEEcC-CCchhHHHHHHHHHHhcCCEEEEEeccCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSN-PRLLTVY-DHENEAAALMIESSKKRGARVSSAEFAWP 259 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~g-d~ll~~~-e~~s~~~~~~~~~a~~~G~~v~~v~~~~~ 259 (588)
.++|+.|++++++++++ |++|+|+++++.+++.++ .++| |+|++.. .|+. . ...++..|++++.++.+ +
T Consensus 61 ~~lr~~la~~~~~~~~~--v~~~~G~~~ai~~~~~~~-~~~g~d~Vl~~~p~~~~-~----~~~~~~~g~~~~~v~~~-~ 131 (356)
T 1fg7_A 61 KAVIENYAQYAGVKPEQ--VLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGM-Y----SVSAETIGVECRTVPTL-D 131 (356)
T ss_dssp HHHHHHHHHHHTSCGGG--EEEESHHHHHHHHHHHHH-CCTTTCEEEECSSSCTH-H----HHHHHHHTCEEEECCCC-T
T ss_pred HHHHHHHHHHhCCChHH--EEEcCCHHHHHHHHHHHH-hCCCCCEEEEeCCChHH-H----HHHHHHcCCEEEEeeCC-C
Confidence 58999999999997655 999999999999999998 7899 9977554 4443 2 23455679999999987 5
Q ss_pred CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH--cCcEEEEeCCCcCCC-CCCCCCC-CC
Q 037063 260 NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE--KGWHVLLDATALGSK-DMDTLGL-SL 334 (588)
Q Consensus 260 ~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~--~g~~vvvDaa~~~~~-d~~~l~l-~~ 334 (588)
++.+|.++|+++++ ++++|++++++|+||.++|.++| ++++. +|+++|+|+++.... ...-..+ ..
T Consensus 132 ~~~~d~~~l~~~i~---------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 202 (356)
T 1fg7_A 132 NWQLDLQGISDKLD---------GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAE 202 (356)
T ss_dssp TSCCCHHHHHTSCT---------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTT
T ss_pred CCCCCHHHHHHHhc---------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCCEEEEEccchhhcCCCcHHHHHhh
Confidence 66788888876553 58999999999999999998886 44433 899999999976421 0111121 23
Q ss_pred CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHH
Q 037063 335 FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKL 414 (588)
Q Consensus 335 ~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~ 414 (588)
++.++++.|++|++|.+..++|++++++++++.+...... | +.+.... +
T Consensus 203 ~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~------------------------~----~~~~~~~---~ 251 (356)
T 1fg7_A 203 YPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAP------------------------Y----PLSTPVA---D 251 (356)
T ss_dssp CTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCS------------------------S----CSCHHHH---H
T ss_pred CCCEEEEecchHhhcCchhhhEEEEeCHHHHHHHHHhcCC------------------------C----CCCHHHH---H
Confidence 4468999999999983222379999988877665432211 0 1111111 2
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHH
Q 037063 415 VECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQ 494 (588)
Q Consensus 415 al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~ 494 (588)
+..++|+......++++.++.+++++++.+.|.++ +++..+.| ..+.++.+.+. +...+.
T Consensus 252 a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~~----~~~~~~~~~~~-------~~~~l~ 311 (356)
T 1fg7_A 252 IAAQALSPQGIVAMRERVAQIIAEREYLIAALKEI---------PCVEQVFD----SETNYILARFK-------ASSAVF 311 (356)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------TTEEEECC----CSSSEEEEEET-------THHHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhC---------CCceEECC----CCCeEEEEECC-------CHHHHH
Confidence 23344432111015777888889999999999885 33333333 24567766664 256677
Q ss_pred HHHHhCCcEecc-ccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 495 KLADRHNISLSC-GFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 495 ~~l~~~gI~v~~-G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
+.|.++||.++. |..|. .. +++|+|++ +.+|++++++.|+++
T Consensus 312 ~~L~~~gI~v~~~g~~~~------------------------~~--~~iRis~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 312 KSLWDQGIILRDQNKQPS------------------------LS--GCLRITVG---TREESQRVIDALRAE 354 (356)
T ss_dssp HHHHHTTEECEECTTSTT------------------------CT--TEEEEECC---CHHHHHHHHHHHHTC
T ss_pred HHHHHCCEEEEECCCCCC------------------------CC--CeEEEEeC---CHHHHHHHHHHHHhh
Confidence 777889999998 75441 01 28999987 689999999998865
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-24 Score=226.58 Aligned_cols=308 Identities=14% Similarity=0.077 Sum_probs=198.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 177 ESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 177 ~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.....+++|++|++++|++ + +++++++|+|+++++. + +++||+|++ ...|++ ...++...++..|++++.++
T Consensus 53 ~~~~~~~lr~~la~~~g~~---~-~i~~~sGt~a~~~al~-~-~~~gd~Vi~~~~~y~~-~~~~~~~~~~~~G~~v~~v~ 125 (393)
T 1n8p_A 53 QNPNRENLERAVAALENAQ---Y-GLAFSSGSATTATILQ-S-LPQGSHAVSIGDVYGG-THRYFTKVANAHGVETSFTN 125 (393)
T ss_dssp CCHHHHHHHHHHHHHTTCS---E-EEEESCHHHHHHHHHH-T-SCSSCEEEEESSCCHH-HHHHHHHTSTTTCSCCEEES
T ss_pred CChhHHHHHHHHHHHhCCC---c-EEEECChHHHHHHHHH-H-cCCCCEEEEeCCCchH-HHHHHHHHHHHcCcEEEEeC
Confidence 3567889999999999985 2 4555555999999999 7 899999664 445554 44443445677899999988
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHc----CcEEEEeCCCcCCCCCCCC
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEK----GWHVLLDATALGSKDMDTL 330 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~----g~~vvvDaa~~~~~d~~~l 330 (588)
++ | ++|+++|+ +++++|++++++|+||.++|+++| ++|+++ |+++|+|+++..+.....+
T Consensus 126 ~~------d-~~l~~~i~--------~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~~ 190 (393)
T 1n8p_A 126 DL------L-NDLPQLIK--------ENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPL 190 (393)
T ss_dssp SH------H-HHHHHHSC--------SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGG
T ss_pred CC------h-HHHHHhcc--------cCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccCCHH
Confidence 74 5 78888887 689999999999999999999999 999999 9999999998875211122
Q ss_pred CCCCCCCcEEEeccCccCCCCCCc--e-EEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 331 GLSLFKPDFLICSFYKIFGENPSG--F-GCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~~G~~P~G--~-G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
.+++|+++.|+||++| |.| + |+++++ +++++.+...... ..++.+
T Consensus 191 ---~~~~di~~~S~sK~~g--~~G~rigG~~~~~~~~~~~~l~~~~~~--------------------------~g~~~~ 239 (393)
T 1n8p_A 191 ---NFGADIVVHSATKYIN--GHSDVVLGVLATNNKPLYERLQFLQNA--------------------------IGAIPS 239 (393)
T ss_dssp ---GGTCSEEEEETTTTTT--CSSCCCCEEEEESCHHHHHHHHHHHHH--------------------------HCCCCC
T ss_pred ---HcCCeEEEEECccccc--CCCCceeEEEEeCCHHHHHHHHHHHHh--------------------------cCCCCC
Confidence 2249999999999999 667 6 888886 5665555422100 011111
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe-E-EEeCCCCC------------CC-
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPL-V-RIYGPKVM------------FD- 471 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~-v-~i~~p~~~------------~~- 471 (588)
.... +++..+++.+ ....++....+..+.+.|.+. +. + +++-|... ..
T Consensus 240 ~~~~---~~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~---------~~~l~~v~~p~l~~~~~~~~~~~~~~~~ 302 (393)
T 1n8p_A 240 PFDA---WLTHRGLKTL-----HLRVRQAALSANKIAEFLAAD---------KENVVAVNYPGLKTHPNYDVVLKQHRDA 302 (393)
T ss_dssp HHHH---HHHHHHHTTH-----HHHHHHHHHHHHHHHHHHTSC---------TTTEEEEECTTSTTSTTHHHHHHHSGGG
T ss_pred HHHH---HHHHhccchH-----HHHHHHHHHHHHHHHHHHHhC---------CCCceEEECCCCCCCccHHHHHhhCCCC
Confidence 1111 2222344332 333344444555566666653 22 2 33333210 01
Q ss_pred c-ccEEEEEeecCCCCCcCHHHHHHHHHhC---CcEeccccccCcccccchHHHHHHHHhhhcCC-CCCcCCc--cEEEE
Q 037063 472 R-GPSLAFNVFDWNGTRIDPALVQKLADRH---NISLSCGFLQNIFFSGEYEQERVRVLETRSGT-NETRSGV--SVVTA 544 (588)
Q Consensus 472 r-g~iv~f~~~~~~g~~i~~~~v~~~l~~~---gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~-~~~~~g~--~~vRv 544 (588)
. +++++|.+.+ ......++++.. +|.++.|..|+........ ....... .....|. +.||+
T Consensus 303 ~~~~i~~~~l~~------~~~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~------~h~~~~~~~~~~~g~~~~~iRl 370 (393)
T 1n8p_A 303 LGGGMISFRIKG------GAEAASKFASSTRLFTLAESLGGIESLLEVPAVM------THGGIPKEAREASGVFDDLVRI 370 (393)
T ss_dssp CCCSEEEEEESS------CHHHHHHHHHHCSSSEECSCCCCSSCEEECTTTT------TSCSSCTTTTTTTSCCTTEEEE
T ss_pred CCccEEEEEeCC------cHHHHHHHHhhCCcceECCCCCCCcceeeccccc------cccccCHHHHHhcCCCCCeEEE
Confidence 4 7899999864 134445555544 5567788777643210000 0000000 0001332 39999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhh
Q 037063 545 ALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 545 Slg~~~t~eDv~~li~~l~~~l 566 (588)
|+|.++++++|+.+.++|+++.
T Consensus 371 S~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 371 SVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp ECCSSCHHHHHHHHHHHHHHHH
T ss_pred EEccCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998754
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-23 Score=217.90 Aligned_cols=314 Identities=11% Similarity=0.009 Sum_probs=216.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....++|+.++++++.+ .+++++|+|+|+.+++.++.+++||+|+ ....|++ . ...++..|++++.++++
T Consensus 38 ~~~~~l~~~la~~~~~~----~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~-~----~~~~~~~g~~~~~~~~~ 108 (374)
T 3uwc_A 38 AELEKFEKRFAALHNAP----HAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIA-S----VGAIVQAGATPVLVDSE 108 (374)
T ss_dssp HHHHHHHHHHHHHTTCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHH-H----HHHHHHTTCEEEEECBC
T ss_pred hhHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHH-H----HHHHHHcCCEEEEEecC
Confidence 45679999999999985 3999999999999999998788999966 4555654 2 23456789999999998
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC--CCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK--DMDTLGLSL 334 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~--d~~~l~l~~ 334 (588)
.++.+|+++|+++++ +++++|+ ++|+||...|+++| ++|+++|+++|+|+++..+. +...++
T Consensus 109 -~~~~~d~~~l~~~~~--------~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~--- 173 (374)
T 3uwc_A 109 -NGYVIDPEKIEAAIT--------DKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVG--- 173 (374)
T ss_dssp -TTSSBCGGGTGGGCC--------TTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETT---
T ss_pred -CCCCcCHHHHHHhCC--------CCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeecc---
Confidence 778899999998887 6788887 77899999999999 99999999999999987752 122222
Q ss_pred CCCcEEEeccC--ccCCCCC-CceEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccc-cCCCCCccc
Q 037063 335 FKPDFLICSFY--KIFGENP-SGFGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS-KFPESSISG 409 (588)
Q Consensus 335 ~~~D~vv~S~~--K~~G~~P-~G~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~-e~GT~~~~~ 409 (588)
..+|++++|+| |++| + ...|+++.++ ++.+.+.....+ +... .|. ...+.++..
T Consensus 174 ~~~d~~~~s~~~~K~l~--~~g~~g~~~~~~~~~~~~~~~~~~~--~~~~-----------------~~~~~~~~~~~~~ 232 (374)
T 3uwc_A 174 SWGQFACFSLHPLKNLN--VWSDAGVIITHSDEYAEKLRLYRNH--GLIN-----------------RDVCVEYGINCRM 232 (374)
T ss_dssp SSSSEEEEECSSSSSSC--CSSCCEEEEESCHHHHHHHHHHTBT--TEEE-----------------TTEESSCCCBCBC
T ss_pred ccccEEEEeCCCCCcCC--ccceeEEEEeCCHHHHHHHHHHHhc--Cccc-----------------cCccccccccCCC
Confidence 11699999988 9888 4 3367777666 344555443322 1110 010 111222221
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe-EEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPL-VRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~-v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
..+..++......+++.+.++.+.+++++.+.|.++ +. +++..+.. .....++.|.+.. .
T Consensus 233 ----~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~-----~ 293 (374)
T 3uwc_A 233 ----DTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDL---------SEFIDVPVRRE-GVYHVFHIYVLRV-----K 293 (374)
T ss_dssp ----CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGG---------TTTEECCCCCT-TEECCCSSEEEEE-----T
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------CCeEEeccCCC-CCceeeEEEEEEc-----C
Confidence 234455555555567889999999999999999885 44 55533211 1112223344443 2
Q ss_pred CHHHHHHHHHhCCcEecccc----ccCccccc-----chHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHH
Q 037063 489 DPALVQKLADRHNISLSCGF----LQNIFFSG-----EYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLW 559 (588)
Q Consensus 489 ~~~~v~~~l~~~gI~v~~G~----~c~~~~~~-----~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li 559 (588)
+...+.+.|.++||.++.|. +|.+.+.. ... .....+. ...||++++.++|.|||++++
T Consensus 294 ~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~lrl~~~~~~t~edi~~~~ 361 (374)
T 3uwc_A 294 YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDF-PMAEKHG-----------EAVITLPAHPYLTEEEINYII 361 (374)
T ss_dssp THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSC-HHHHHHH-----------HHEEEECCCTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCC-ccHHHHH-----------hCEEEccCCCCCCHHHHHHHH
Confidence 46778888888999999885 33221110 000 0001111 128999999999999999999
Q ss_pred HHHHHhhhh
Q 037063 560 AFVSRFLDA 568 (588)
Q Consensus 560 ~~l~~~l~~ 568 (588)
+.|++++++
T Consensus 362 ~~l~~~l~~ 370 (374)
T 3uwc_A 362 KKVREFYLE 370 (374)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998865
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-23 Score=218.37 Aligned_cols=298 Identities=12% Similarity=0.035 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHh----CCCCCCc-eEEEecCHHHHHHHHHHhCCCCCCCeEEEcC-CCchhHHHHHHHHHHhcCCEEEE
Q 037063 180 LESKIRKRIMDFM----NISEDDY-TLVFTANQSSAFKLLAESYPFYSNPRLLTVY-DHENEAAALMIESSKKRGARVSS 253 (588)
Q Consensus 180 ~~~~~r~~ia~~l----ga~~~e~-~vvft~g~T~al~lv~~s~~~~~gd~ll~~~-e~~s~~~~~~~~~a~~~G~~v~~ 253 (588)
...++|+.|++++ |++.+.. .|+||+|+|+|+.+++.++ .++||+|++.. .|+. . ...++..|++++.
T Consensus 64 ~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l-~~~gd~vl~~~p~y~~-~----~~~~~~~g~~~~~ 137 (376)
T 2dou_A 64 CTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLAL-TEPEDLLLLPEVAYPS-Y----FGAARVASLRTFL 137 (376)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCHH-H----HHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHh-cCCCCEEEECCCCcHh-H----HHHHHHcCCEEEE
Confidence 3567888888887 8753222 5999999999999999998 88999976544 4443 2 3445678999999
Q ss_pred EeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCCCcCCC-C--
Q 037063 254 AEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYM---WM-SVAAEKGWHVLLDATALGSK-D-- 326 (588)
Q Consensus 254 v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa~~~~~-d-- 326 (588)
++.+ .+..+|+++|++++. +++++|++++++|+||.++|.+ +| ++|+++|+++|+|+++.... +
T Consensus 138 ~~~~-~~~~~d~~~l~~~l~--------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~ 208 (376)
T 2dou_A 138 IPLR-EDGLADLKAVPEGVW--------REAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE 208 (376)
T ss_dssp ECBC-TTSSBCGGGSCHHHH--------HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC
T ss_pred eeCC-CCCCCCHHHHHHhhc--------cCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC
Confidence 9983 444589999999987 5789999999999999999954 46 78999999999999976521 0
Q ss_pred -CCCCCC-CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 327 -MDTLGL-SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 327 -~~~l~l-~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
...+.+ .....++++.|++|.+|.++.++|++++++++++.+...... ...+
T Consensus 209 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~--------------------------~~~~ 262 (376)
T 2dou_A 209 APSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLERVKGV--------------------------IDFN 262 (376)
T ss_dssp CCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECHHHHHHHHHHHHH--------------------------HCCC
T ss_pred CCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCHHHHHHHHHHHHh--------------------------cccC
Confidence 111222 123467899999999883223479999988887766432211 0011
Q ss_pred CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCC
Q 037063 405 SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWN 484 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~ 484 (588)
.+.... +++..+|+.... .++++.++.+.+++++.+.|.+ . ++++.+ ..+.++.+.+.+
T Consensus 263 ~~~~~~---~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~---------~--~~~~~~----~~~~~~~~~~~~-- 321 (376)
T 2dou_A 263 QYAGVL---RMGVEALKTPKE-VVRGYARVYRERALGMAEALKG---------V--LSLLPP----RATMYLWGRLPE-- 321 (376)
T ss_dssp SCHHHH---HHHHHHHTSCHH-HHHHHHHHHHHHHHHHHHHHTT---------T--SEECCC----CBSSEEEEECCT--
T ss_pred CCHHHH---HHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHH---------h--cCccCC----CeeEEEEEECCC--
Confidence 222221 334445543222 2577788888889999998876 2 445433 123345566643
Q ss_pred CCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 485 GTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 485 g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
+ ++...+.+.|.++||.++.|..|.. .+.++||+|++. +.+|++++++.|++
T Consensus 322 ~--~~~~~~~~~l~~~gi~v~~g~~f~~------------------------~~~~~~Ris~~~--~~~~i~~~l~~l~~ 373 (376)
T 2dou_A 322 G--VDDLEFGLRLVERGVALAPGRGFGP------------------------GGKGFVRIALVR--PLEELLEAAKRIRE 373 (376)
T ss_dssp T--CCHHHHHHHHHHTTEECEEGGGGCG------------------------GGTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHCCEEEcCchhhCC------------------------CCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 1 4566676666667999998865521 111289999985 88999999999988
Q ss_pred hhh
Q 037063 565 FLD 567 (588)
Q Consensus 565 ~l~ 567 (588)
+++
T Consensus 374 ~l~ 376 (376)
T 2dou_A 374 ALD 376 (376)
T ss_dssp TC-
T ss_pred HhC
Confidence 763
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-23 Score=221.73 Aligned_cols=309 Identities=9% Similarity=0.006 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCc-eEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 179 ELESKIRKRIMDFMNISEDDY-TLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~-~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++.+.+.+.+.+.+|.+.+.. .|+||+|+|+|+.+++.++ .++||+|++ ...|+. . ...++..|++++.++.
T Consensus 81 ~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-~~~gd~Vl~~~p~y~~-~----~~~~~~~g~~~~~~~~ 154 (429)
T 1yiz_A 81 RLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGH-VDEGDEVIIIEPFFDC-Y----EPMVKAAGGIPRFIPL 154 (429)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT-H----HHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHh-cCCCCEEEEcCCCchh-H----HHHHHHcCCEEEEEeC
Confidence 344444444444457532223 4999999999999999998 789999664 445553 2 2345668999999998
Q ss_pred cCC---------CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcC
Q 037063 257 AWP---------NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALG 323 (588)
Q Consensus 257 ~~~---------~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~ 323 (588)
+.. ++.+|+++|+++++ +++++|++++++|+||.++| +++| ++|+++|+++|+|+++..
T Consensus 155 ~~~~~~~~~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~ 226 (429)
T 1yiz_A 155 KPNKTGGTISSADWVLDNNELEALFN--------EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEH 226 (429)
T ss_dssp BCCCSSSSEEGGGCBCCHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred CcccccccccccCcccCHHHHHHHhc--------cCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccc
Confidence 743 35689999999987 68999999999999999997 6677 899999999999999764
Q ss_pred C----CCCCCC-CCC-CCCCcEEEeccCccCCCCCCc--eEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccc
Q 037063 324 S----KDMDTL-GLS-LFKPDFLICSFYKIFGENPSG--FGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLD 395 (588)
Q Consensus 324 ~----~d~~~l-~l~-~~~~D~vv~S~~K~~G~~P~G--~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~ 395 (588)
. ....++ .+. ....|+++.|++|.+| +.| +|++++++++++.+......
T Consensus 227 ~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~~~--------------------- 283 (429)
T 1yiz_A 227 MVFEPFEHIRICTLPGMWERTITIGSAGKTFS--LTGWKIGWAYGPEALLKNLQMVHQN--------------------- 283 (429)
T ss_dssp CBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHT--CGGGCCEEEESCHHHHHHHHHHHHT---------------------
T ss_pred cccCCCCCcChhhccCCcCceEEEecchhccC--CCCcceEEEEeCHHHHHHHHHHHhh---------------------
Confidence 2 111111 121 2447999999999998 557 99999998877665432110
Q ss_pred ccccccCCCCCccchhhHHHHHHHHHH-----H--HHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCC
Q 037063 396 ESSQSKFPESSISGVSSKLVECKGLDH-----A--DALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKV 468 (588)
Q Consensus 396 ~~~f~e~GT~~~~~~~~~~al~~aL~~-----l--~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~ 468 (588)
...+.+.... +++..+|+. . .. .++++.++.+.+++++.+.|.++ +++++.+
T Consensus 284 -----~~~~~~~~~~---~a~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~-- 342 (429)
T 1yiz_A 284 -----CVYTCATPIQ---EAIAVGFETELKRLKSPEC-YFNSISGELMAKRDYMASFLAEV----------GMNPTVP-- 342 (429)
T ss_dssp -----TTCCCCHHHH---HHHHHHHHHHHTTTTSTTS-HHHHHHHHHHHHHHHHHHHHHHH----------TCEEEEC--
T ss_pred -----cccCCChHHH---HHHHHHHhcccccccchHH-HHHHHHHHHHHHHHHHHHHHHhC----------CCcccCC--
Confidence 0111222211 344455554 1 11 16788889999999999999885 2445544
Q ss_pred CCCcccEEEEEeecCCC--------CCcCHHHHHH-HHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCc
Q 037063 469 MFDRGPSLAFNVFDWNG--------TRIDPALVQK-LADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGV 539 (588)
Q Consensus 469 ~~~rg~iv~f~~~~~~g--------~~i~~~~v~~-~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ 539 (588)
..+.++.+.+.+... ...+...+.+ +++++||.+++|..+.... ... .+.
T Consensus 343 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~------------~~~-------~~~ 401 (429)
T 1yiz_A 343 --QGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEP------------NKH-------LGE 401 (429)
T ss_dssp --SBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGG------------GGG-------GTT
T ss_pred --CcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCc------------ccC-------CCC
Confidence 234577777754210 0023445554 5568999999875442100 000 112
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 540 SVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 540 ~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
++||+|++ ++.+||+++++.|++++++
T Consensus 402 ~~iRis~~--~~~e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 402 DFVRYCFF--KKDENLQKAAEILRKWKGS 428 (429)
T ss_dssp TEEEEECC--SCHHHHHHHHHHHHHHSCC
T ss_pred CeEEEEec--CCHHHHHHHHHHHHHhccC
Confidence 38999998 4899999999999998764
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-23 Score=217.34 Aligned_cols=301 Identities=13% Similarity=0.096 Sum_probs=200.9
Q ss_pred HHHHHHHH----hCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 184 IRKRIMDF----MNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 184 ~r~~ia~~----lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
+|+.|+++ +|.+.+...|++|+|+|+|+.+++.++ .++||+|++. ..|++ . ...++..|++++.+|.+.
T Consensus 69 lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l-~~~gd~vl~~~p~y~~-~----~~~~~~~g~~~~~v~~~~ 142 (390)
T 1d2f_A 69 FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQW-SETGEGVVIHTPAYDA-F----YKAIEGNQRTVMPVALEK 142 (390)
T ss_dssp HHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHS-SCTTCEEEEEESCCHH-H----HHHHHHTTCEEEEEECEE
T ss_pred HHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCcHH-H----HHHHHHCCCEEEEeeccc
Confidence 55555555 473222335999999999999999999 7899997654 44543 2 344567899999999873
Q ss_pred CC--CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcCCC-C-CCCC
Q 037063 259 PN--LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALGSK-D-MDTL 330 (588)
Q Consensus 259 ~~--~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~~-d-~~~l 330 (588)
.+ ..+|+++|+++++. .++++|++++++|+||.++| +++| ++|+++|+++|+|+++.... + ....
T Consensus 143 ~~~~~~~d~~~l~~~l~~-------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~ 215 (390)
T 1d2f_A 143 QADGWFCDMGKLEAVLAK-------PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHI 215 (390)
T ss_dssp CSSSEECCHHHHHHHHTS-------TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCC
T ss_pred CCCccccCHHHHHHHhcc-------CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCc
Confidence 32 25899999999971 37899999999999999999 6777 89999999999999976521 0 0111
Q ss_pred CCCCC--C-CcEEEeccCccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 331 GLSLF--K-PDFLICSFYKIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 331 ~l~~~--~-~D~vv~S~~K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
.+... . .|. +.|++|.+|.+..++|+++++ +++++.+.....+. + ..++.+
T Consensus 216 ~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~-----------------------~-~~~~~~ 270 (390)
T 1d2f_A 216 PWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGR-----------------------D-GLSSPS 270 (390)
T ss_dssp CGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTT-----------------------S-CCCSCC
T ss_pred CHHHcchhhHhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHhhh-----------------------c-ccCCCC
Confidence 11111 1 277 999999988322237999996 46655554322100 0 112333
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE-EEEeecCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL-AFNVFDWNG 485 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv-~f~~~~~~g 485 (588)
..+. +++..+++..... ++++.++.+.+++++.+.|.+. .|+++++.+ .++++ .+.+.+. |
T Consensus 271 ~~~~---~a~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~~--------~~~~~~~~~-----~~~~~~~~~~~~~-~ 332 (390)
T 1d2f_A 271 VLAL---TAHIAAYQQGAPW-LDALRIYLKDNLTYIADKMNAA--------FPELNWQIP-----QSTYLAWLDLRPL-N 332 (390)
T ss_dssp HHHH---HHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHH--------CSSCCCCCC-----SBCSEEEEECGGG-C
T ss_pred HHHH---HHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHHHHhh--------CCCCEEecC-----CccEEEEEEcccc-C
Confidence 3332 3444556542222 6778888899999999999872 144555443 34444 4566531 1
Q ss_pred CCcCHHHHHHHHH-hCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 486 TRIDPALVQKLAD-RHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 486 ~~i~~~~v~~~l~-~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
++...+.+.|. ++||.+++|..|.+ .+.++||+|++. +.++++++++.|++
T Consensus 333 --~~~~~l~~~l~~~~gi~v~~g~~f~~------------------------~~~~~~Ris~~~--~~~~l~~~l~~l~~ 384 (390)
T 1d2f_A 333 --IDDNALQKALIEQEKVAIMPGYTYGE------------------------EGRGFVRLNAGC--PRSKLEKGVAGLIN 384 (390)
T ss_dssp --CCHHHHHHHHHHTTCEECEEGGGGCG------------------------GGTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHcCEEeeCccccCC------------------------CCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 34666666665 78999999866521 111289999986 58999999999998
Q ss_pred hhhh
Q 037063 565 FLDA 568 (588)
Q Consensus 565 ~l~~ 568 (588)
++++
T Consensus 385 ~l~~ 388 (390)
T 1d2f_A 385 AIRA 388 (390)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-23 Score=219.94 Aligned_cols=292 Identities=13% Similarity=0.080 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
+..+++++++++++|++ . .+++.++|+|+..++.++ +++||.|+++...|.... ..++..|++++.++.
T Consensus 104 ~~~~~l~~~la~~~g~~---~-~i~~~sGt~a~~~~l~~~-~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~~~~-- 172 (409)
T 3kki_A 104 YDKPMIEKRLAKFTGFD---E-CLLSQSGWNANVGLLQTI-CQPNTNVYIDFFAHMSLW----EGARYANAQAHPFMH-- 172 (409)
T ss_dssp TTSCHHHHHHHHHHTCS---E-EEEESCHHHHHHHHHHHH-CCTTCEEEEETTSCHHHH----HHHHHTTCEEEEECT--
T ss_pred HHHHHHHHHHHHHhCCC---e-EEEecchHHHHHHHHHHh-cCCCCEEEECCCcCHHHH----HHHHHcCCeEEEecC--
Confidence 34458999999999985 2 455566679999898988 899999776554443232 334557998887754
Q ss_pred CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCC-------CCCC
Q 037063 259 PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKD-------MDTL 330 (588)
Q Consensus 259 ~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d-------~~~l 330 (588)
+|+++|+++|.+ .++++|++++++|+||.+.|+++| ++|+++|++||+|+++..+.- ....
T Consensus 173 ----~d~~~le~~l~~-------~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~ 241 (409)
T 3kki_A 173 ----NNCDHLRMLIQR-------HGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAEL 241 (409)
T ss_dssp ----TCHHHHHHHHHH-------HCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHH
T ss_pred ----CCHHHHHHHHHh-------cCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhc
Confidence 578999999982 247999999999999999999999 999999999999999865310 0112
Q ss_pred CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 331 GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
++. ..+|+++.|++|.+|. . .|+++.++++++.+....... .| .++.+...
T Consensus 242 ~~~-~~~di~~~s~sK~~~~--~-gg~v~~~~~~~~~~~~~~~~~----------------------~~--~~~~~~~~- 292 (409)
T 3kki_A 242 GLT-REVHFMTASLAKTFAY--R-AGAIWCNNEVNRCVPFISYPA----------------------IF--SSTLLPYE- 292 (409)
T ss_dssp TCG-GGCSEEEEESSSTTCS--S-CEEEEESSSGGGTHHHHCHHH----------------------HH--SBCCCHHH-
T ss_pred CCC-CCCCEEEeecchhhCC--C-ceEEEECHHHHHHHHHhCcCc----------------------cc--cCCCcHHH-
Confidence 221 2489999999999984 3 499999988876554321100 01 11122222
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCH
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDP 490 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~ 490 (588)
.+++.++++.++.. +.+.++.+++++++.+.|.++ | +++. ..+.++.+.+.+. .+.
T Consensus 293 --~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~-------g---~~~~------~~~~~~~~~~~~~----~~~ 348 (409)
T 3kki_A 293 --AAGLETTLEIIESA--DNRRQHLDRMARKLRIGLSQL-------G---LTIR------SESQIIGLETGDE----RNT 348 (409)
T ss_dssp --HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHTT-------T---CCCC------CSSSEEEEEEESH----HHH
T ss_pred --HHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-------C---CccC------CCCCEEEEEeCCH----HHH
Confidence 25666788887764 778889999999999999986 2 2222 2467888877641 124
Q ss_pred HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 491 ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 491 ~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
..+.+.|.++||.++.++.... ..+..+||++++.+++.|||+++++.|+++++.
T Consensus 349 ~~~~~~L~~~Gv~v~~~~~~~~-----------------------~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 349 EKVRDYLESNGVFGSVFCRPAT-----------------------SKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHHTTEECEEECTTSS-----------------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCceEeeeCCCCc-----------------------CCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 4566667777999876533210 123349999999999999999999999998764
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-23 Score=224.27 Aligned_cols=321 Identities=12% Similarity=0.067 Sum_probs=218.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCC--------ceEEEecCHHHHHHHHHHhCCC------------------CCCCeEEE-cC
Q 037063 178 SELESKIRKRIMDFMNISEDD--------YTLVFTANQSSAFKLLAESYPF------------------YSNPRLLT-VY 230 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e--------~~vvft~g~T~al~lv~~s~~~------------------~~gd~ll~-~~ 230 (588)
.++++++.+++++++|.+.+. ...+||+|+|+|+.+++.+..- .++++|++ ..
T Consensus 117 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~ 196 (481)
T 4e1o_A 117 TELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQ 196 (481)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETT
T ss_pred HHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCc
Confidence 688889999999999996431 1589999999998766654311 14556664 45
Q ss_pred CCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHH
Q 037063 231 DHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAA 309 (588)
Q Consensus 231 e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~ 309 (588)
.|.+ . .+.++..|++++.+|++ +++.+|+++|+++|++. +.....+.+|++++.+|++|.+.|+++| ++|+
T Consensus 197 ~H~s-~----~~~~~~~g~~~~~v~~~-~~~~~d~~~Le~~i~~~--~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~ 268 (481)
T 4e1o_A 197 AHSS-V----EKAGLISLVKMKFLPVD-DNFSLRGEALQKAIEED--KQRGLVPVFVCATLGTTGVCAFDCLSELGPICA 268 (481)
T ss_dssp SCHH-H----HHHHHHHTCEEEEECCC-TTSCCCHHHHHHHHHHH--HHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred chHH-H----HHHHHhCCCceEEEEcC-CCCcCCHHHHHHHHHHH--HhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHH
Confidence 5553 2 23345579999999998 78899999999999731 1122347889999999999999999999 9999
Q ss_pred HcCcEEEEeCCCcCCC----CCCCC--CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcch-h-ccc--CCCCCCCceE
Q 037063 310 EKGWHVLLDATALGSK----DMDTL--GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSA-S-VLS--GSTSSVSTIM 379 (588)
Q Consensus 310 ~~g~~vvvDaa~~~~~----d~~~l--~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~-~-~l~--~~~~g~~g~v 379 (588)
++|++++||+++..+. ....+ ++ ..+|++++++||+++. |.|+|+++++++.. . .+. +.+......
T Consensus 269 ~~~~~lhvDaA~g~~~~~~~~~~~~~~gi--~~aDsi~~~~hK~l~~-p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~- 344 (481)
T 4e1o_A 269 REGLWLHIDAAYAGTAFLCPEFRGFLKGI--EYADSFTFNPSKWMMV-HFDCTGFWVKDKYKLQQTFSVNPIYLRHANS- 344 (481)
T ss_dssp HHTCEEEEECTTGGGGGGSGGGGGGGTTG--GGCSEEEECHHHHSSC-CSSCEEEEESBHHHHHTTTCCCCGGGCCTTT-
T ss_pred HcCCeEEeehhhHHHHHhChhhHHHhcCc--ccCCEEEEChHHhcCC-CCceEEEEEeCHHHHHHHhcCCchhccCccc-
Confidence 9999999999976541 11111 22 1369999999998875 99999999998643 1 111 111110000
Q ss_pred eeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC
Q 037063 380 GIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIP 459 (588)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~ 459 (588)
... .+...+ .. +.|. .+.. ..+..++..+...|++++.++...+++++.+.|.++ +
T Consensus 345 ~~~---~~~~~~------~~-~~~r-~~~~----l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---------~ 400 (481)
T 4e1o_A 345 GVA---TDFMHW------QI-PLSR-RFRS----VKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND---------P 400 (481)
T ss_dssp TTS---CCGGGG------SS-SSCC-CCTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------T
T ss_pred CCC---CCcccc------cc-cCCC-CccH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC---------C
Confidence 000 000000 01 2222 2222 455677777777788999999999999999999984 7
Q ss_pred eEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCc-EeccccccCcccccchHHHHHHHHhhhcCCCCCcCC
Q 037063 460 LVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNI-SLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSG 538 (588)
Q Consensus 460 ~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI-~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g 538 (588)
+++++.+ ...+++.|.+.+.+ .....+.+.+.+.|+ .+..+.. .|
T Consensus 401 g~~~~~~----~~~~~v~f~~~~~~---~~~~~l~~~L~~~g~~~~~~~~~---------------------------~g 446 (481)
T 4e1o_A 401 SFEIPAK----RHLGLVVFRLKGPN---SLTENVLKEIAKAGRLFLIPATI---------------------------QD 446 (481)
T ss_dssp TEECCSC----CCSSEEEEEESSCH---HHHHHHHHHHHHHCSSBCEEEEE---------------------------TT
T ss_pred CeEEecC----CceeEEEEEeCCch---HHHHHHHHHHHhCCeEEEEeeEE---------------------------CC
Confidence 8888765 34689999986421 123445555555564 3332210 33
Q ss_pred ccEEEEecC-CCCCHHHHHHHHHHHHHhhhh
Q 037063 539 VSVVTAALG-CLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 539 ~~~vRvSlg-~~~t~eDv~~li~~l~~~l~~ 568 (588)
...+|+++. +.+|.+||+++++.|++++++
T Consensus 447 ~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 477 (481)
T 4e1o_A 447 KLIIRFTVTSQFTTRDDILRDWNLIRDAATL 477 (481)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 448999976 556999999999999998764
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-23 Score=219.20 Aligned_cols=305 Identities=10% Similarity=0.046 Sum_probs=204.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcC-CCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVY-DHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~-e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++.+.+.+.+.+.+|.+.+...|++|+|+|+|+.+++.++ .++||+|++.. .|++ . ...++..|++++.++.+
T Consensus 70 ~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l-~~~gd~vl~~~p~~~~-~----~~~~~~~g~~~~~~~~~ 143 (399)
T 1c7n_A 70 EYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREF-TKPGDGVIIITPVYYP-F----FMAIKNQERKIIECELL 143 (399)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH-CCTTCEEEECSSCCTH-H----HHHHHTTTCEEEECCCE
T ss_pred HHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCcHh-H----HHHHHHcCCEEEecccc
Confidence 3334444444444573322335999999999999999999 78999977654 4443 2 34456789999999885
Q ss_pred CCC--CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcCCC----CC
Q 037063 258 WPN--LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALGSK----DM 327 (588)
Q Consensus 258 ~~~--~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~~----d~ 327 (588)
+++ ..+|+++|++++++ +++++|++++++|+||..+| +++| ++|+++|+++|+|+++.... ..
T Consensus 144 ~~~g~~~~d~~~l~~~l~~-------~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~ 216 (399)
T 1c7n_A 144 EKDGYYTIDFQKLEKLSKD-------KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEH 216 (399)
T ss_dssp EETTEEECCHHHHHHHHTC-------TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCC
T ss_pred cCCCCEEEcHHHHHHHhcc-------CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCc
Confidence 332 35899999999972 46899999999999999999 7778 99999999999999976521 01
Q ss_pred CCC-CCCC--CCCcEEEeccCccCCCCCCceEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCC
Q 037063 328 DTL-GLSL--FKPDFLICSFYKIFGENPSGFGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP 403 (588)
Q Consensus 328 ~~l-~l~~--~~~D~vv~S~~K~~G~~P~G~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G 403 (588)
.++ .+.. ...++++.|++|.+|.+..++|++++++ ++++.+...... + ..+
T Consensus 217 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~------------------------~-~~~ 271 (399)
T 1c7n_A 217 TVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDA------------------------T-SGM 271 (399)
T ss_dssp CCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHH------------------------T-TCC
T ss_pred ccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhh------------------------c-ccC
Confidence 111 1111 2357899999999883222379999975 466655432211 0 111
Q ss_pred CCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHc-ccCCCCCCCCCeEEEeCCCCCCCcccEEE-EEee
Q 037063 404 ESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMN-LHHPHSETGIPLVRIYGPKVMFDRGPSLA-FNVF 481 (588)
Q Consensus 404 T~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~-L~h~~~~~g~~~v~i~~p~~~~~rg~iv~-f~~~ 481 (588)
+.+.... +++.++|+...+ .++++.++.+.+++++.+.|.+ + |+++++.+ .++++. +.+.
T Consensus 272 ~~~~~~~---~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~---------~~~~~~~~-----~~~~~~~~~~~ 333 (399)
T 1c7n_A 272 PFTTLGY---KACEICYKECGK-WLDGCIKVIDKNQRIVKDFFEVNH---------PEIKAPLI-----EGTYLQWIDFR 333 (399)
T ss_dssp CCCHHHH---HHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHC---------TTSBCCCC-----SBSSEEEEECG
T ss_pred CCCHHHH---HHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHHhhC---------CCCeEecC-----CceEEEEEEcc
Confidence 2232222 334455553222 2677888889999999999987 4 44554433 345444 5665
Q ss_pred cCCCCCcCHHHHHHHH-HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHH
Q 037063 482 DWNGTRIDPALVQKLA-DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 482 ~~~g~~i~~~~v~~~l-~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~ 560 (588)
+. | ++...+.+.| +++||.+++|..|.+ .+.++||+|++.. .++++++++
T Consensus 334 ~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~~------------------------~~~~~iRis~~~~--~~~l~~~l~ 384 (399)
T 1c7n_A 334 AL-K--MDHKAMEEFMIHKAQIFFDEGYIFGD------------------------GGIGFERINLAAP--SSVIQESLE 384 (399)
T ss_dssp GG-C--CCHHHHHHHHHHTTCCCCEEGGGGCG------------------------GGTTEEEEECCSC--HHHHHHHHH
T ss_pred cC-C--CCHHHHHHHHHHhCCEEEeCccccCC------------------------CCCCeEEEEeccC--HHHHHHHHH
Confidence 31 1 3466666666 478999998866531 1122899999864 799999999
Q ss_pred HHHHhhhh
Q 037063 561 FVSRFLDA 568 (588)
Q Consensus 561 ~l~~~l~~ 568 (588)
.|++++++
T Consensus 385 ~l~~~l~~ 392 (399)
T 1c7n_A 385 RLNKALKD 392 (399)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-23 Score=218.37 Aligned_cols=288 Identities=11% Similarity=0.049 Sum_probs=200.2
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
.++|+.+++++++++++ |+||+|+|+|+.+++.++ +||+|++ ...|++ . ...++..|++++.++.+..+
T Consensus 62 ~~l~~~la~~~~~~~~~--v~~~~g~~~al~~~~~~~---~gd~vl~~~p~y~~-~----~~~~~~~g~~~~~v~~~~~~ 131 (364)
T 1lc5_A 62 FHLHQALARHHQVPASW--ILAGNGETESIFTVASGL---KPRRAMIVTPGFAE-Y----GRALAQSGCEIRRWSLREAD 131 (364)
T ss_dssp HHHHHHHHHHHTSCGGG--EEEESSHHHHHHHHHHHH---CCSEEEEEESCCTH-H----HHHHHHTTCEEEEEECCGGG
T ss_pred HHHHHHHHHHHCcCHHH--EEECCCHHHHHHHHHHHc---CCCeEEEeCCCcHH-H----HHHHHHcCCeEEEEeCCccc
Confidence 58999999999997654 999999999999999987 5788664 445553 2 34456789999999986322
Q ss_pred CccC-HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcCCC-C-CCCCC-C
Q 037063 261 LRIH-SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALGSK-D-MDTLG-L 332 (588)
Q Consensus 261 ~~i~-~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~~-d-~~~l~-l 332 (588)
+ ++ .+++.+.+. +++++|++++++|+||.++| +++| ++|+++|+++|+|+++.... + ...+. +
T Consensus 132 ~-~~~l~~~~~~~~--------~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 202 (364)
T 1lc5_A 132 G-WQLTDAILEALT--------PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPAL 202 (364)
T ss_dssp T-TCCCTTHHHHCC--------TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGC
T ss_pred c-cchhHHHHHhcc--------CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHh
Confidence 2 33 355555554 57899999999999999999 7777 89999999999999976421 0 11122 1
Q ss_pred CCCCCcEEEeccCccCCCCCCceEEEE-EeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchh
Q 037063 333 SLFKPDFLICSFYKIFGENPSGFGCLF-VKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVS 411 (588)
Q Consensus 333 ~~~~~D~vv~S~~K~~G~~P~G~G~L~-v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~ 411 (588)
...+.|+++.|++|++|.+..++|+++ .++++++.+...... .+.+....
T Consensus 203 ~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~----------------------------~~~~~~~~- 253 (364)
T 1lc5_A 203 KDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMP----------------------------WSVNALAA- 253 (364)
T ss_dssp TTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCT----------------------------TCSCHHHH-
T ss_pred ccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCCC----------------------------CCCCHHHH-
Confidence 234578999999999984223479999 888877665432211 01222221
Q ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHH
Q 037063 412 SKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPA 491 (588)
Q Consensus 412 ~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~ 491 (588)
+++..+|+.- . .++++.++.+.+++++.+.|.++ |+++++. ..+.++.+.+.+. ..
T Consensus 254 --~~~~~~l~~~-~-~~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~-----~~g~~~~~~~~~~------~~ 309 (364)
T 1lc5_A 254 --LAGEVALQDS-A-WQQATWHWLREEGARFYQALCQL---------PLLTVYP-----GRANYLLLRCERE------DI 309 (364)
T ss_dssp --HHHHHGGGCH-H-HHHHHHHHHHHHHHHHHHHHHTS---------TTEEECC-----CSSSEEEEEESCT------TC
T ss_pred --HHHHHHHhCc-H-HHHHHHHHHHHHHHHHHHHHhcC---------CCCEECC-----CCCeEEEEECCCc------HH
Confidence 3333445431 1 26778888888999999999874 5677753 2467777766531 22
Q ss_pred HHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 492 LVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 492 ~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.+.+.|.++||.++.|..|.. .+.++||+|++ +.+|++++++.|+++++.
T Consensus 310 ~l~~~l~~~gi~v~~g~~~~~------------------------~~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 310 DLQRRLLTQRILIRSCANYPG------------------------LDSRYYRVAIR---SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp CHHHHHHTTTEECEECTTSTT------------------------CCTTEEEEECC---CHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHCCcEEeeCcccCC------------------------CCCCEEEEEeC---CHHHHHHHHHHHHHHhhc
Confidence 355666678999998865521 11238999976 689999999999988654
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-23 Score=215.27 Aligned_cols=324 Identities=9% Similarity=0.002 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
...+++|+.|++++|++ +.|++++| |+|+++++.++.+++||+|+ ....|++ . ...++..|++++.++++
T Consensus 38 ~~~~~l~~~la~~~~~~---~~i~~~sG-t~al~~~l~~l~~~~gd~Vi~~~~~~~~-~----~~~~~~~g~~~~~v~~~ 108 (388)
T 1b9h_A 38 DEVNSFEREFAAHHGAA---HALAVTNG-THALELALQVMGVGPGTEVIVPAFTFIS-S----SQAAQRLGAVTVPVDVD 108 (388)
T ss_dssp SHHHHHHHHHHHHTTCS---EEEEESCH-HHHHHHHHHHTTCCTTCEEEEESSSCTH-H----HHHHHHTTCEEEEECBC
T ss_pred HHHHHHHHHHHHHhCCC---eEEEeCCH-HHHHHHHHHHcCCCCcCEEEECCCccHH-H----HHHHHHcCCEEEEEecC
Confidence 34679999999999985 34666655 99999999998778999965 5566765 2 23456789999999998
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFK 336 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~ 336 (588)
..++.+|+++|+++|+ +++++|+ ++|+||.+.|+++| ++|+++|++||+|+++..+......++..++
T Consensus 109 ~~~~~~d~~~l~~~i~--------~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~ 177 (388)
T 1b9h_A 109 AATYNLDPEAVAAAVT--------PRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD 177 (388)
T ss_dssp TTTCCBCHHHHHHHCC--------TTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS
T ss_pred CCcCCCCHHHHHHhcC--------cCceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeeccccc
Confidence 4457899999999997 6788887 78899999999999 9999999999999998875211111122222
Q ss_pred -CcEEEeccCccCCCCCCceEEEEEeCc-c--hhcccCCCCCCCceEeeecCCCcccccccccccccc--cCCCCCccch
Q 037063 337 -PDFLICSFYKIFGENPSGFGCLFVKKS-S--ASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS--KFPESSISGV 410 (588)
Q Consensus 337 -~D~vv~S~~K~~G~~P~G~G~L~v~~~-~--~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~--e~GT~~~~~~ 410 (588)
+++..+|.||+++. + ..|+++.+++ + ++.+...... +... . + ..|+ ..|+......
T Consensus 178 ~i~~~S~s~~K~l~g-~-~~G~~~~~~~~~~~~~~~~~~~~~--~~~~---~----------~-~~~~~~~~g~~~~~~~ 239 (388)
T 1b9h_A 178 SIATFSFQNGKLMTA-G-EGGAVVFPDGETEKYETAFLRHSC--GRPR---D----------D-RRYFHKIAGSNMRLNE 239 (388)
T ss_dssp SCEEEECCTTSSSCS-S-SCEEEEECTTCHHHHHHHHHHTBT--TCCT---T----------C-SSCCCCSCCCBCBCBH
T ss_pred ceEEEEccCCCcccC-C-CeEEEEECCHHHHHHHHHHHHHhC--CCCc---c----------C-ccceeecccccCCcCH
Confidence 44445555687762 4 4688888876 4 3444322211 1100 0 0 0110 2344321221
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCC--CCcccEEEEEeecCCCCCc
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVM--FDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~--~~rg~iv~f~~~~~~g~~i 488 (588)
...+++..++++ ++...++.+.+++++.+.|.++ ++++++++... ...+.++.|.+.+.. ..
T Consensus 240 ~~~a~~~~~~~~-----l~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 303 (388)
T 1b9h_A 240 FSASVLRAQLAR-----LDEQIAVRDERWTLLSRLLGAI---------DGVVPQGGDVRADRNSHYMAMFRIPGLT--EE 303 (388)
T ss_dssp HHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTS---------TTCEECCCCTTCCBCCCSEEEEECTTCC--HH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccC---------CCccccCCCcCCCccceEEEEEEeCCcC--cc
Confidence 011222222222 4667777788899999999874 56777764321 123567888876411 01
Q ss_pred CHHHHHHHHHhCCcEeccccccCcccccchH---------------HHHHHHHhhhcCCCCCcCCccEEEEecCCCC-CH
Q 037063 489 DPALVQKLADRHNISLSCGFLQNIFFSGEYE---------------QERVRVLETRSGTNETRSGVSVVTAALGCLT-NF 552 (588)
Q Consensus 489 ~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~-t~ 552 (588)
+...+.+.|.++||.++.+...... ...+. -.....+.. ..||++++..+ |.
T Consensus 304 ~~~~l~~~L~~~gI~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~l~~~~~~~t~ 371 (388)
T 1b9h_A 304 RRNALVDRLVEAGLPAFAAFRAIYR-TDAFWELGAPDESVDAIARRCPNTDAISS-----------DCVWLHHRVLLAGE 371 (388)
T ss_dssp HHHHHHHHHHHTTCCEEECCCCGGG-SHHHHHSSCCSSCHHHHHHTCHHHHHHHH-----------HEEEEEGGGGGSCH
T ss_pred cHHHHHHHHHHCCCCcccccCcccc-ChHhHhcCCCcccccccccCCHHHHHHHh-----------CeEEecCCCCCCCH
Confidence 3566777777899999876431100 00000 000111111 28999999999 99
Q ss_pred HHHHHHHHHHHHhhhh
Q 037063 553 EDTYRLWAFVSRFLDA 568 (588)
Q Consensus 553 eDv~~li~~l~~~l~~ 568 (588)
|||+++++.|+++++.
T Consensus 372 edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 372 PELHATAEIIADAVAR 387 (388)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998753
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-23 Score=221.80 Aligned_cols=300 Identities=13% Similarity=0.057 Sum_probs=202.9
Q ss_pred HHHHHHHHHHh----CCCCCC-ceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 182 SKIRKRIMDFM----NISEDD-YTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 182 ~~~r~~ia~~l----ga~~~e-~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.++|+.|++++ |++.+. ..|++|+|+|+|+.+++.++ +++||+|++ ...|++ . ...++..|++++.++
T Consensus 78 ~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~-~~~gd~Vl~~~p~~~~-~----~~~~~~~g~~~~~~~ 151 (412)
T 2x5d_A 78 PRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLAT-LDHGDTILVPNPSYPI-H----IYGAVIAGAQVRSVP 151 (412)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHH-CCTTCEEEEEESCCHH-H----HHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchh-H----HHHHHHcCCEEEEee
Confidence 36677777776 853221 24999999999999999998 889999664 445553 2 234456799999999
Q ss_pred ccCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCH---HHH-HHHHHcCcEEEEeCCCcCCC----C
Q 037063 256 FAWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSY---MWM-SVAAEKGWHVLLDATALGSK----D 326 (588)
Q Consensus 256 ~~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl---~~I-~~a~~~g~~vvvDaa~~~~~----d 326 (588)
.+.. ...+|+++|+++++ +++++|++++++|+||..+|. ++| ++|+++|+++|+|+++.... .
T Consensus 152 ~~~~~~~~~d~~~l~~~i~--------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~ 223 (412)
T 2x5d_A 152 LVPGIDFFNELERAIRESI--------PKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWK 223 (412)
T ss_dssp CSTTSCHHHHHHHHHHTEE--------SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC
T ss_pred cCCccCCCCCHHHHHHhcc--------cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC
Confidence 8733 23378888988887 678999999999999999996 456 88999999999999976531 0
Q ss_pred CCC-CCCCC-CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 327 MDT-LGLSL-FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 327 ~~~-l~l~~-~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
..+ ..+.. .+.|+++.|++|++|.+..++|++++++++++.+...... ...+
T Consensus 224 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~--------------------------~~~~ 277 (412)
T 2x5d_A 224 APSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSY--------------------------HDYG 277 (412)
T ss_dssp CCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEECHHHHHHHHHHHHH--------------------------HCCC
T ss_pred CCChhhccCccCcEEEEecCccccCCcccceEEEEcCHHHHHHHHHHHhh--------------------------hccC
Confidence 001 11211 3478999999999983233489999988887766432210 0112
Q ss_pred CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCC
Q 037063 405 SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWN 484 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~ 484 (588)
.+.... +++..+|+...+ .++.+.++.+.+++++.+.|.++ | ++++.+ ..+.++.+.+..
T Consensus 278 ~~~~~~---~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-------g---~~~~~~----~~g~~~~~~~~~-- 337 (412)
T 2x5d_A 278 TFTPLQ---VAAIAALEGDQQ-CVRDIARQYQQRRDVLVKGLREA-------G---WMVENP----KASMYVWAKIPE-- 337 (412)
T ss_dssp CCHHHH---HHHHHHHHSCSH-HHHHHHHHHHHHHHHHHHHHHHH-------T---CCCCCC----SBSSEEEEECCT--
T ss_pred CCHHHH---HHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHHC-------C---CEecCC----CeeeEEEEEcCC--
Confidence 222221 333344543211 26778888889999999999875 2 333332 123355566642
Q ss_pred CCCc---CHHHHHHHH-HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHH
Q 037063 485 GTRI---DPALVQKLA-DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 485 g~~i---~~~~v~~~l-~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~ 560 (588)
+ + +...+.+.| +++||.+++|..|.. .+.++||+|++. +.++++++++
T Consensus 338 ~--~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------------------------~~~~~iRis~~~--~~~~l~~~l~ 389 (412)
T 2x5d_A 338 P--YAHLGSLEFAKKLLQDAKVSVSPGIGFGD------------------------YGDDHVRFALIE--NRDRLRQAVR 389 (412)
T ss_dssp T--TGGGCHHHHHHHHHHHHCEECEEGGGGCG------------------------GGTTEEEEECCS--CHHHHHHHHH
T ss_pred c--cCCCCHHHHHHHHHHHCCEEEeCchhhCC------------------------CCCCeEEEEecC--CHHHHHHHHH
Confidence 1 2 455565554 668999998866521 112389999986 8999999999
Q ss_pred HHHHhhhhh
Q 037063 561 FVSRFLDAD 569 (588)
Q Consensus 561 ~l~~~l~~~ 569 (588)
.|++++++.
T Consensus 390 ~l~~~l~~~ 398 (412)
T 2x5d_A 390 GIKAMFRAD 398 (412)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999988764
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=224.56 Aligned_cols=314 Identities=12% Similarity=0.073 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
...+++|++|++++|++ +.|+|++| ++|+.+++. + +++||+|++ ...|++ .+..+...++..|++++.++.+
T Consensus 67 p~~~~l~~~la~~~g~~---~~i~~~sG-~~ai~~~~~-l-~~~gd~Vl~~~~~y~~-~~~~~~~~~~~~G~~v~~v~~~ 139 (403)
T 3cog_A 67 PTRNCLEKAVAALDGAK---YCLAFASG-LAATVTITH-L-LKAGDQIICMDDVYGG-TNRYFRQVASEFGLKISFVDCS 139 (403)
T ss_dssp HHHHHHHHHHHHHHTCS---EEEEESCH-HHHHHHHHT-T-SCTTCEEEEESSCCHH-HHHHHHHTGGGGTCEEEEECTT
T ss_pred chHHHHHHHHHHHhCCC---cEEEECCH-HHHHHHHHH-H-hCCCCEEEEeCCCcch-HHHHHHHHHHHcCCEEEEECCC
Confidence 44679999999999985 34666655 699999998 7 899999664 555654 3433345567789999999874
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcC-cEEEEeCCCcCCCCCCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKG-WHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g-~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
|.++|+++|+ +++++|++++++|+||.++|+++| ++|+++| +++++|+++..+....+++ .
T Consensus 140 ------d~~~l~~~i~--------~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~~---~ 202 (403)
T 3cog_A 140 ------KIKLLEAAIT--------PETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLA---L 202 (403)
T ss_dssp ------SHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTTT---T
T ss_pred ------CHHHHHHhcC--------cCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCccc---c
Confidence 7889999887 689999999999999999999999 9999999 9999999988763223443 3
Q ss_pred CCcEEEeccCccCCCCCCc--eEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhh
Q 037063 336 KPDFLICSFYKIFGENPSG--FGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSS 412 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G--~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~ 412 (588)
++|+++.|++|++|. |.| +|+++++ +++++.+.+...++ | ++.+....
T Consensus 203 ~~div~~S~sK~~~g-~~~~~~G~v~~~~~~l~~~l~~~~~~~-g-------------------------~~~~~~~~-- 253 (403)
T 3cog_A 203 GADISMYSATKYMNG-HSDVVMGLVSVNCESLHNRLRFLQNSL-G-------------------------AVPSPIDC-- 253 (403)
T ss_dssp TCSEEEEETTTTTTC-SSCCCCEEEEECCHHHHHHHHHHHHHH-C-------------------------CCCCHHHH--
T ss_pred CCeEEEEcChhhccC-CCCCeEEEEEECcHHHHHHHHHHHHhc-C-------------------------CCCCHHHH--
Confidence 489999999998874 665 5999996 46666554332110 1 11111111
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH--HHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCH
Q 037063 413 KLVECKGLDHADALGLILISNRARYLINWLANA--LMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDP 490 (588)
Q Consensus 413 ~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~--L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~ 490 (588)
.++..+++.+... +++..+....+++++.+. +.+..++.-+ ..|+++++.+.. ...+++++|.+.+ ..
T Consensus 254 -~~~~~~l~~l~~r-~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~-~~p~~~~~~~~~-~~~g~~~~~~l~~------~~ 323 (403)
T 3cog_A 254 -YLCNRGLKTLHVR-MEKHFKNGMAVAQFLESNPWVEKVIYPGLP-SHPQHELVKRQC-TGCTGMVTFYIKG------TL 323 (403)
T ss_dssp -HHHHHHHTTHHHH-HHHHHHHHHHHHHHHHTCTTEEEEECTTST-TSTTHHHHHHHC-SCCCSEEEEEESS------CH
T ss_pred -HHHHhhhhHHHHH-HHHHHHHHHHHHHHHhcCCCEEEEECCCCC-CCCcHHHHHhcC-CCCceEEEEEecC------CH
Confidence 2223445433221 233333333444444321 0000011000 012233332211 1348899998754 13
Q ss_pred HHHHHHHHhCCcEecc---cc------ccCccc-ccchHHHHHHHHhhhcCCCCCcCC--ccEEEEecCCCCCHHHHHHH
Q 037063 491 ALVQKLADRHNISLSC---GF------LQNIFF-SGEYEQERVRVLETRSGTNETRSG--VSVVTAALGCLTNFEDTYRL 558 (588)
Q Consensus 491 ~~v~~~l~~~gI~v~~---G~------~c~~~~-~~~~~~~~~~~l~~~~~~~~~~~g--~~~vRvSlg~~~t~eDv~~l 558 (588)
+.+.+++++.||.++. |. +|.... +.... ..... .| .+.||+|+|..++.++|++|
T Consensus 324 ~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~----~~~~~--------~g~~~~~iRlSvg~e~~~d~i~~l 391 (403)
T 3cog_A 324 QHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLK----NDRDV--------LGISDTLIRLSVGLEDEEDLLEDL 391 (403)
T ss_dssp HHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCH----HHHHH--------HTCCTTEEEEECCSSCHHHHHHHH
T ss_pred HHHHHHHHhCCcceEccCCCCcceeeecccccccccCCH----HHHHh--------cCCCcCeEEEEeCCCCHHHHHHHH
Confidence 5678888999996542 42 332211 00000 00111 12 23999999999999999999
Q ss_pred HHHHHHhhh
Q 037063 559 WAFVSRFLD 567 (588)
Q Consensus 559 i~~l~~~l~ 567 (588)
.++|++.++
T Consensus 392 ~~al~~~~~ 400 (403)
T 3cog_A 392 DQALKAAHP 400 (403)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhhc
Confidence 999987665
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=222.34 Aligned_cols=305 Identities=10% Similarity=0.105 Sum_probs=212.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++.+++++.+++.++.+.+...|+||+|+++|+.+++.++ .++||+|++ ...|++ . ...++..|.+++.+|+
T Consensus 99 ~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~-~~~gd~Vi~~~~~y~~-~----~~~~~~~g~~~~~~~~ 172 (421)
T 3l8a_A 99 DDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAF-SEKGDAVLINSPVYYP-F----ARTIRLNDHRLVENSL 172 (421)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH-SCTEEEEEEEESCCHH-H----HHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCcHH-H----HHHHHHCCCEEEeccc
Confidence 57788999999999994333345999999999999999998 889999664 445553 2 3445678999999998
Q ss_pred cC--CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcCC------
Q 037063 257 AW--PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALGS------ 324 (588)
Q Consensus 257 ~~--~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~------ 324 (588)
++ .+..+|+++|+++|++ +++++|++++++|++|..+| +++| ++|+++|+++|+|+++..-
T Consensus 173 ~~~~~~~~~d~~~le~~i~~-------~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~ 245 (421)
T 3l8a_A 173 QIINGRFEIDFEQLEKDIID-------NNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNT 245 (421)
T ss_dssp EEETTEEECCHHHHHHHHHH-------TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC
T ss_pred cccCCCeeeCHHHHHHHhhc-------cCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC
Confidence 63 3346899999999972 57999999999999999965 4556 8899999999999997541
Q ss_pred -CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccC
Q 037063 325 -KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKF 402 (588)
Q Consensus 325 -~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~ 402 (588)
..+..++.+....++++.|++|.+|.++.++|+++++ +++.+.+.+.... + ..
T Consensus 246 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~------------------------~-~~ 300 (421)
T 3l8a_A 246 HHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLA------------------------N-NQ 300 (421)
T ss_dssp CCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHH------------------------T-TC
T ss_pred CccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHh------------------------c-cc
Confidence 1112222111235689999999888323456999998 5665555432110 0 11
Q ss_pred CCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE-EEee
Q 037063 403 PESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA-FNVF 481 (588)
Q Consensus 403 GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~-f~~~ 481 (588)
++.+..+. +++.++++...+. ++++.++.+.+++++.+.|.++ |+++++.+ .+..+. +.+.
T Consensus 301 ~~~n~~~~---~a~~aal~~~~~~-~~~~~~~~~~~~~~l~~~L~~~---------~~i~~~~~-----~~~~~~~v~~~ 362 (421)
T 3l8a_A 301 HEVPTVGM---IATQAAFQYGKPW-LEELKTVIEGNIKLVIKELEAK---------TKIKVMEP-----EGTYLVWLDFS 362 (421)
T ss_dssp SCCCHHHH---HHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHH---------CSCEEECC-----SBSSEEEEECG
T ss_pred CCCCHHHH---HHHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhC---------CCceEeCC-----CeeEEEEEecc
Confidence 23343332 4455666643332 6888889999999999999884 45777654 344444 5554
Q ss_pred cCCCCCcCHHHHHHHH-HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHH
Q 037063 482 DWNGTRIDPALVQKLA-DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 482 ~~~g~~i~~~~v~~~l-~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~ 560 (588)
.. | ++...+.+.| +++||.++.|..|.. .+..+||++++ ++.+||+++++
T Consensus 363 ~~-~--~~~~~l~~~l~~~~gi~v~~g~~f~~------------------------~~~~~iRi~~~--~~~~~i~~~l~ 413 (421)
T 3l8a_A 363 AY-A--IAQPQLSEKLQNEAKVVLNDGAHFGK------------------------EGKYFARLNVA--TPKNTVQEALS 413 (421)
T ss_dssp GG-T--CCTTHHHHHHHHTTCEECEEGGGGCG------------------------GGTTEEEEECC--SCHHHHHHHHH
T ss_pred cc-C--CCHHHHHHHHHHhCCEEEECchhhCC------------------------CCCCEEEEEec--CCHHHHHHHHH
Confidence 31 1 2344555544 678999999866531 12239999988 68999999999
Q ss_pred HHHHhhh
Q 037063 561 FVSRFLD 567 (588)
Q Consensus 561 ~l~~~l~ 567 (588)
.|+++++
T Consensus 414 ~l~~~l~ 420 (421)
T 3l8a_A 414 RIISVFG 420 (421)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 9998765
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=214.97 Aligned_cols=297 Identities=16% Similarity=0.122 Sum_probs=196.9
Q ss_pred HHHHHHHHHh----CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 183 KIRKRIMDFM----NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 183 ~~r~~ia~~l----ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++|+.|++++ |.+.+...|+||+|+|+|+++++.++ +++||+|++. ..|++ . ...++..|++++.++++
T Consensus 72 ~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l-~~~gd~vl~~~p~~~~-~----~~~~~~~g~~~~~v~~~ 145 (391)
T 3h14_A 72 ALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTAL-FDSGDRVGIGAPGYPS-Y----RQILRALGLVPVDLPTA 145 (391)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCHH-H----HHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHh-cCCCCEEEEcCCCCcc-H----HHHHHHcCCEEEEeecC
Confidence 5555555555 53323335999999999999999999 8999997654 44442 2 34567789999999987
Q ss_pred CC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcCCC-CCCCCC
Q 037063 258 WP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALGSK-DMDTLG 331 (588)
Q Consensus 258 ~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~~-d~~~l~ 331 (588)
.. +..+|+++|+++ ++++|++++++|+||..+| +++| ++|+++|+++|+|+++.... +-....
T Consensus 146 ~~~~~~~d~~~l~~~-----------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~ 214 (391)
T 3h14_A 146 PENRLQPVPADFAGL-----------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVT 214 (391)
T ss_dssp GGGTTSCCHHHHTTS-----------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCC
T ss_pred cccCCCCCHHHHHhc-----------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcC
Confidence 32 235687776532 5889999999999999999 5566 88999999999999976421 001111
Q ss_pred CC-CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 332 LS-LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 332 l~-~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
+. ....++++.|++|.+|.++.++|++++++++++.+...... ..++.+....
T Consensus 215 ~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~ 268 (391)
T 3h14_A 215 ALELTDECYVINSFSKYFSMTGWRVGWMVVPEDQVRVVERIAQN--------------------------MFICAPHASQ 268 (391)
T ss_dssp GGGTCSSSEEEEESSSTTCCTTSCCEEEECCGGGHHHHHHHHHH--------------------------TTCCCCHHHH
T ss_pred hhhcCCCEEEEEechhccCCccceeEEEEeCHHHHHHHHHHHhh--------------------------hccCCCHHHH
Confidence 11 12356888999999984355689999988877665432211 1112232221
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCH
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDP 490 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~ 490 (588)
+++.++|+. ...++++.++.+.+++++.+.|.++ +...++.| ..+.++.+.+.... .+.
T Consensus 269 ---~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~---------~~~~~~~~----~~~~~~~~~~~~~~---~~~ 327 (391)
T 3h14_A 269 ---VAALAALDC--DAELQANLDVYKANRKLMLERLPKA---------GFTRIAPP----DGAFYVYADVSDLT---DDS 327 (391)
T ss_dssp ---HHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHH---------TCCCBCCC----CBTTEEEEECTTTC---SCH
T ss_pred ---HHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHHc---------CCCcccCC----CeeEEEEEecCccC---CCH
Confidence 333345541 1236778888899999999999885 11222222 12234444554311 456
Q ss_pred HHHHH-HHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 491 ALVQK-LADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 491 ~~v~~-~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
..+.+ +++++||.+++|..|... .+.++||+|++. +.||++++++.|++++++
T Consensus 328 ~~~~~~l~~~~gi~v~~g~~~~~~-----------------------~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~ 381 (391)
T 3h14_A 328 RAFAAEILEKAGVAVTPGLDFDPE-----------------------RGAGTLRFSYAR--ATADIEEGLDRLEAFMQA 381 (391)
T ss_dssp HHHHHHHHHHHCEECEEGGGTCTT-----------------------TGGGEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEcCchhhCCC-----------------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 66654 456679999999777320 112399999987 789999999999987764
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=215.68 Aligned_cols=299 Identities=10% Similarity=0.047 Sum_probs=201.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCC-CeEEEcC-CCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSN-PRLLTVY-DHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~g-d~ll~~~-e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.++.+.+.+.+.+.+|.+.+...|+||+|+|+|+.+++.++ +++| |+|++.. .|+. . ...++..|++++.++
T Consensus 79 ~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l-~~~g~d~vl~~~p~~~~-~----~~~~~~~g~~~~~v~ 152 (398)
T 3ele_A 79 VETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRAL-TSDAYDEFITIAPYFPE-Y----KVFVNAAGARLVEVP 152 (398)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH-CCSTTCEEEEESSCCTH-H----HHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHH-cCCCCCEEEEeCCCchh-h----HHHHHHcCCEEEEEe
Confidence 34555555555555664333345999999999999999999 8999 9976544 4442 2 345577899999999
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHH------cCcEEEEeCCCcCCC
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAE------KGWHVLLDATALGSK 325 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~------~g~~vvvDaa~~~~~ 325 (588)
++..++.+|+++|+++++ +++++|++++++|+||..+|.++ | ++|++ +|+++|+|+++....
T Consensus 153 ~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~ 224 (398)
T 3ele_A 153 ADTEHFQIDFDALEERIN--------AHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIV 224 (398)
T ss_dssp CCTTTSSCCHHHHHHTCC--------TTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCB
T ss_pred cCCcCCcCCHHHHHHHhC--------cCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccc
Confidence 975566899999999987 68999999999999999999554 5 77888 899999999976421
Q ss_pred -C--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcc--cCCCCCCCceEeeecCCCcccccccccccccc
Q 037063 326 -D--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVL--SGSTSSVSTIMGIEPSFSEIIELETLDESSQS 400 (588)
Q Consensus 326 -d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l--~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~ 400 (588)
+ ..+........++++.|++|.+|.++.++|++++++++++.. ...... .. .
T Consensus 225 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~----------------~~-----~-- 281 (398)
T 3ele_A 225 YDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCG----------------AG-----R-- 281 (398)
T ss_dssp CTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHH----------------HH-----H--
T ss_pred cCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHH----------------Hh-----h--
Confidence 0 111112233467999999999984355699999998865421 100000 00 0
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE-EEEE
Q 037063 401 KFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS-LAFN 479 (588)
Q Consensus 401 e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i-v~f~ 479 (588)
..++.+.... +...+...++.. ...++.+..++++.+.|.++ +++++.| .+++ +.+.
T Consensus 282 ~~~~~~~~~~----~~~a~~~~l~~~---~~~~~~~~~~~~l~~~L~~~----------g~~~~~~-----~~~~~~~~~ 339 (398)
T 3ele_A 282 ALGYVCAPSL----FQKMIVKCQGAT---GDINAYKENRDLLYEGLTRI----------GYHCFKP-----DGAFYMFVK 339 (398)
T ss_dssp HTTCCCSCHH----HHHHHTTCTTCC---CCHHHHHHHHHHHHHHHHHH----------TCCEECC-----SBSSEEEEE
T ss_pred hccccCCCHH----HHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHc----------CCeecCC-----CeeEEEEEE
Confidence 0111111111 111222222221 13566677788888888875 2344443 2344 5555
Q ss_pred eecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHH
Q 037063 480 VFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLW 559 (588)
Q Consensus 480 ~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li 559 (588)
+.+ .+...+.+.|.++||.+++|..|. ..++||+|++ ++.|||++++
T Consensus 340 ~~~-----~~~~~~~~~l~~~gi~v~~g~~~~--------------------------~~~~iRis~~--~~~e~i~~~l 386 (398)
T 3ele_A 340 ALE-----DDSNAFCEKAKEEDVLIVAADGFG--------------------------CPGWVRISYC--VDREMIKHSM 386 (398)
T ss_dssp CSS-----SCHHHHHHHHHTTTEECEESGGGT--------------------------CTTEEEEECC--SCHHHHHHHH
T ss_pred cCC-----CCHHHHHHHHHHCCEEEeCccccC--------------------------CCCeEEEEec--CCHHHHHHHH
Confidence 543 346778888889999999986652 1128999997 6999999999
Q ss_pred HHHHHhhhh
Q 037063 560 AFVSRFLDA 568 (588)
Q Consensus 560 ~~l~~~l~~ 568 (588)
+.|++++++
T Consensus 387 ~~l~~~l~~ 395 (398)
T 3ele_A 387 PAFEKIYKK 395 (398)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-23 Score=216.01 Aligned_cols=295 Identities=15% Similarity=0.119 Sum_probs=208.4
Q ss_pred HHHHHHHHHHh-CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEeccCC
Q 037063 182 SKIRKRIMDFM-NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEFAWP 259 (588)
Q Consensus 182 ~~~r~~ia~~l-ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~ 259 (588)
.++|+.+++++ ++++++ |++|+|+|+|+.+++.++ +++||+|++. ..|++ . ...++..|++++.++++++
T Consensus 66 ~~l~~~la~~~~~~~~~~--v~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~~~~-~----~~~~~~~g~~~~~v~~~~~ 137 (375)
T 3op7_A 66 PAFKKSVSQLYTGVKPEQ--ILQTNGATGANLLVLYSL-IEPGDHVISLYPTYQQ-L----YDIPKSLGAEVDLWQIEEE 137 (375)
T ss_dssp HHHHHHHHTTSSSCCGGG--EEEESHHHHHHHHHHHHH-CCTTCEEEEEESSCTH-H----HHHHHHTTCEEEEEEEEGG
T ss_pred HHHHHHHHHHhccCChhh--EEEcCChHHHHHHHHHHh-cCCCCEEEEeCCCchh-H----HHHHHHcCCEEEEEecccc
Confidence 48899999988 466554 999999999999999999 8999997654 44543 2 3445678999999998733
Q ss_pred -CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcCCCCCCCCC--C
Q 037063 260 -NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALGSKDMDTLG--L 332 (588)
Q Consensus 260 -~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~--l 332 (588)
+..+|+++|+++++ +++++|++++++|+||..+| +++| ++|+++|+++|+|+++.... ...+. .
T Consensus 138 ~~~~~d~~~l~~~l~--------~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~-~~~~~~~~ 208 (375)
T 3op7_A 138 NGWLPDLEKLRQLIR--------PTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFS-ELDVPSII 208 (375)
T ss_dssp GTTEECHHHHHHHCC--------TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCS-SSCCCCHH
T ss_pred CCCCCCHHHHHHhhc--------cCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccc-ccCCCchh
Confidence 34589999999997 68999999999999999999 8888 99999999999999965521 01110 1
Q ss_pred CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhh
Q 037063 333 SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSS 412 (588)
Q Consensus 333 ~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~ 412 (588)
+....++++.|++|.+|.+..++|++++++++++.+......+ ..+.+....
T Consensus 209 ~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~--------------------------~~~~~~~~~-- 260 (375)
T 3op7_A 209 EVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYT--------------------------MICAGVFDD-- 260 (375)
T ss_dssp HHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGT--------------------------TSCCCHHHH--
T ss_pred hhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhh--------------------------ccCCCcHHH--
Confidence 1233678999999999842344799999888877776443210 001111111
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHH
Q 037063 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPAL 492 (588)
Q Consensus 413 ~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~ 492 (588)
++...+++..+.. +++..++.+.+++++.+.|.++ +++.++.|. .+..+.+.+... .+...
T Consensus 261 -~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~l~~~---------~~~~~~~~~----~~~~~~~~~~~~----~~~~~ 321 (375)
T 3op7_A 261 -LVAQLALAHYQEI-LERNRHILEENLAILDQWIEEE---------PLVSYIRPA----VVSTSFVKIAVD----MPMED 321 (375)
T ss_dssp -HHHHHHHHTHHHH-HHHHHHHHHHHHHHHHHHHHHC---------TTEEECCCS----SSSCEEEEECCS----SCHHH
T ss_pred -HHHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHhhC---------CCceEecCC----CeEEEeEEcCCC----CCHHH
Confidence 3334556554443 5677777788888999988873 567766542 223333334321 34555
Q ss_pred H-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 493 V-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 493 v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+ .+++.++||.+++|..+. ....+|++++. +.|||+++++.|.+++++
T Consensus 322 ~~~~ll~~~gi~v~~g~~~~--------------------------~~~~iRi~~~~--~~~~i~~~l~~l~~~l~~ 370 (375)
T 3op7_A 322 FCLQLLQEHGVLLVPGNRFE--------------------------RDGYVRLGFAC--EQETLIKGLEKLSQFLRR 370 (375)
T ss_dssp HHHHHHHHHCEECEEGGGGT--------------------------CTTEEEECCCS--CHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhCCEEEeChhhhC--------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 5 455588999999885441 11289999875 459999999999998875
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-24 Score=230.11 Aligned_cols=285 Identities=13% Similarity=0.051 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcC-CCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVY-DHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~-e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
..++++|+.+++ +|++ +.++||+|+|+|+.+++.++ +++||+|++.. .|++ ... .+...|++++.++..
T Consensus 57 ~~~~~~~~~la~-~g~~---~~v~~~~G~t~a~~~~~~a~-~~~gd~Vlv~~~~h~s-~~~----~~~~~G~~~~~v~~~ 126 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDY---DGYFLVNGTTSGILSVIQSF-SQKKGDILMARNVHKS-VLH----ALDISQQEGHFIETH 126 (446)
T ss_dssp SHHHHHHHHHCS-CTTE---EEEEESSHHHHHHHHHHHTT-TTSSSCEEECTTCCHH-HHH----HHHHHTCCEEECEEE
T ss_pred hHHHHHHHHHHh-cCCC---ceEEEeCCHHHHHHHHHHHh-cCCCCEEEEecCccHH-HHH----HHHHcCCeEEEEeCe
Confidence 456899999999 9986 35999999999999999999 89999977554 5554 332 234469999999883
Q ss_pred C-CC----CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCC--C
Q 037063 258 W-PN----LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMD--T 329 (588)
Q Consensus 258 ~-~~----~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~--~ 329 (588)
+ ++ +.++.++| +. +++++|++++ +|++|..+|+++| ++|+++|+++++|+++....... +
T Consensus 127 ~~~~~~~~~~~d~~~l---~~--------~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~ 194 (446)
T 2x3l_A 127 QSPLTNHYNKVNLSRL---NN--------DGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFP 194 (446)
T ss_dssp ECTTTSSEEEEEC------------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSC
T ss_pred eccccCcCCCCCHHHH---cC--------CCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCC
Confidence 2 33 56777777 44 6789999999 6669999999999 99999999999999976521000 2
Q ss_pred CCCCCCCCcEEEeccCc-cCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 330 LGLSLFKPDFLICSFYK-IFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 330 l~l~~~~~D~vv~S~~K-~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
++.....+|+++.|+|| ++| +.|+|+++++++.++ +.+...+ + ..+ ..+++++.
T Consensus 195 ~~~~~~g~Di~~~S~~K~l~~--~~g~g~l~~~~~~i~-~~~~~~~--~-------------------~~~-~~~s~~~~ 249 (446)
T 2x3l_A 195 DSTLNYQADYVVQSFHKTLPA--LTMGSVLYIHKNAPY-RENIIEY--L-------------------SYF-QTSSPSYL 249 (446)
T ss_dssp CCGGGGTCSEEEECHHHHSSS--CTTCEEEEEETTCTT-HHHHHHH--H-------------------HHH-SCSSCCHH
T ss_pred CChHHcCCCEEEECCcccccc--ccccEEEEEcCCcCC-HHHHHHH--H-------------------HHH-cCCCchHH
Confidence 22223348999999999 555 789999999988654 2221111 0 022 45666665
Q ss_pred chhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 409 GVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
.+ +++..+++++...|.+++.++.+.+++++++. . ++++++.+ +..+.+.+.+ +
T Consensus 250 ~~---aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~--g------------~~~~~~~~----~~~l~i~~~~-----~ 303 (446)
T 2x3l_A 250 IM---ASLESAAQFYKTYDSTLFFAKRAQLIECLENK--G------------FEMLQVDD----PLKLLIKYEG-----F 303 (446)
T ss_dssp HH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--T------------CEEEECSS----TTEEEEECTT-----S
T ss_pred HH---HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc--C------------CEECcCCC----CeEEEEEeCC-----c
Confidence 54 67778889998888777889999999888876 3 34444421 2346666653 5
Q ss_pred CHHHHHHHHHhCCcEec-cccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 489 DPALVQKLADRHNISLS-CGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 489 ~~~~v~~~l~~~gI~v~-~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
+...+.+.|.++||.++ .| . ..||++++.++|.+|+ ++++.|+++++
T Consensus 304 ~~~~l~~~L~~~GI~v~~~g-----------------------------~--~~iRi~~~~~~t~e~i-~l~~aL~~~~~ 351 (446)
T 2x3l_A 304 TGHDIQNWFMNAHIYLELAD-----------------------------D--YQALAILPLWHHDDTY-LFDSLLRKIED 351 (446)
T ss_dssp CHHHHHHHHHHTTEEESEEC-----------------------------S--SCEEEECCCCCTTCCC-CHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCEEEecC-----------------------------C--CEEEEEeecCCCHHHH-HHHHHHHHHHH
Confidence 67778888877799987 33 1 2799999999999999 99999999875
Q ss_pred h
Q 037063 568 A 568 (588)
Q Consensus 568 ~ 568 (588)
.
T Consensus 352 ~ 352 (446)
T 2x3l_A 352 M 352 (446)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-22 Score=214.03 Aligned_cols=308 Identities=12% Similarity=0.051 Sum_probs=201.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+++|++|++++|++ .+++++|+++|+.+++.++ +++||+|+ ....|++ ....+...++..|++++.++.
T Consensus 58 ~~~~~~l~~~la~~~g~~----~~i~~~sG~~ai~~~~~~~-~~~gd~vl~~~~~y~~-~~~~~~~~~~~~g~~~~~v~~ 131 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGAA----GSAAFGSGMGAISSSTLAF-LQKGDHLIAGDTLYGC-TVSLFTHWLPRFGIEVDLIDT 131 (389)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHTTT-CCTTCEEEEESSCCHH-HHHHHHHHHHHTTCEEEEECT
T ss_pred ChHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHH-hCCCCEEEEeCCCchH-HHHHHHHHHHHcCCEEEEECC
Confidence 456789999999999985 2677777889999999998 89999966 4556665 344335557788999999986
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
.|.++|+++|+ +++++|++++++|++|.+.|+++| ++|+++|+++++|+++..+....+++ +
T Consensus 132 ------~d~~~l~~~i~--------~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~---~ 194 (389)
T 3acz_A 132 ------SDVEKVKAAWK--------PNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLE---L 194 (389)
T ss_dssp ------TCHHHHHHTCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGG---T
T ss_pred ------CCHHHHHHhcC--------CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCccc---c
Confidence 37889998887 689999999999999999999999 99999999999999987763223343 3
Q ss_pred CCcEEEeccCccCCCCCCc--eEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhh
Q 037063 336 KPDFLICSFYKIFGENPSG--FGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSS 412 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G--~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~ 412 (588)
.+|+++.|++|++|. |.+ .|++++++ ++++.+.+.... ..++.+....
T Consensus 195 ~~di~~~S~sK~~~~-~~~~~~G~v~~~~~~~~~~l~~~~~~--------------------------~g~~~~~~~~-- 245 (389)
T 3acz_A 195 GADIALHSVSKYING-HGDVIGGVSSAKTAEDIATIKFYRKD--------------------------AGSLMAPMDA-- 245 (389)
T ss_dssp TCSEEEEETTTTTTC-SSCCCCEEEEESSHHHHHHHHHHHHH--------------------------HCCCCCHHHH--
T ss_pred CCeEEEECChhhccC-CCCceeEEEEECcHHHHHHHHHHHHh--------------------------cCCCCCHHHH--
Confidence 499999999998874 555 59999998 877766533210 0011111110
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHccc------CCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCC
Q 037063 413 KLVECKGLDHADALGLILISNRARYLINWLANALMNLH------HPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGT 486 (588)
Q Consensus 413 ~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~------h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~ 486 (588)
.+...+++.+ +...++....+..+.+.|.+++ ++.-+ ..|+++++.+.. ...+++++|.+.+
T Consensus 246 -~~~~~~l~~l-----~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~-~~~~~~~~~~~~-~g~g~~~~~~l~~---- 313 (389)
T 3acz_A 246 -FLCARGMKTL-----PIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLE-SFPGHDIAKKQM-TGYGSTFLFEMKS---- 313 (389)
T ss_dssp -HHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHHCTTEEEEECTTST-TSTTHHHHHHHC-SSCCSEEEEEESS----
T ss_pred -HHHHcCccHH-----HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCC-CCccHHHHHhhC-CCCCeEEEEEECC----
Confidence 1222344322 3333444445555666665531 00000 011111111110 1247899998853
Q ss_pred CcCHHHHHHHHHhCCcEecc---c------cccCcccccchHHHHHHHHhhhcCCCCCcCC--ccEEEEecCCCCCHHHH
Q 037063 487 RIDPALVQKLADRHNISLSC---G------FLQNIFFSGEYEQERVRVLETRSGTNETRSG--VSVVTAALGCLTNFEDT 555 (588)
Q Consensus 487 ~i~~~~v~~~l~~~gI~v~~---G------~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g--~~~vRvSlg~~~t~eDv 555 (588)
.+.+.+++++.||.++. | ++|.......... ..... .| .+.||+|+|..++.++|
T Consensus 314 ---~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~---~~~~~--------~g~~~~~iRlsvg~~~~~~li 379 (389)
T 3acz_A 314 ---FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPE---NIMRK--------QGITPELVRISVGIENVDDII 379 (389)
T ss_dssp ---HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCH---HHHHH--------HTCCTTEEEEECCSSCHHHHH
T ss_pred ---HHHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCH---HHHHh--------cCCCcCeEEEEeccCCHHHHH
Confidence 56678899999998776 5 5664322111000 11111 22 23999999998777777
Q ss_pred HHHHHHHH
Q 037063 556 YRLWAFVS 563 (588)
Q Consensus 556 ~~li~~l~ 563 (588)
+.+.++|+
T Consensus 380 ~~l~~al~ 387 (389)
T 3acz_A 380 ADLKQALE 387 (389)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 77666654
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-23 Score=217.50 Aligned_cols=296 Identities=13% Similarity=0.077 Sum_probs=199.6
Q ss_pred HHHHHHHHHh----CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 183 KIRKRIMDFM----NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 183 ~~r~~ia~~l----ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++|+.+++++ |.+.+...|++|+|+|+|+.+++.++ +++||+|++ ...|++ . ...++..|++++.++.+
T Consensus 83 ~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~-~~~gd~Vl~~~~~~~~-~----~~~~~~~g~~~~~v~~~ 156 (409)
T 2gb3_A 83 ELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVI-ANPGDEILVLEPFYAN-Y----NAFAKIAGVKLIPVTRR 156 (409)
T ss_dssp HHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTH-H----HHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHh-CCCCCEEEEcCCCchh-H----HHHHHHcCCEEEEeccC
Confidence 5666666665 43222235999999999999999998 889999664 455653 2 23456679999999987
Q ss_pred C-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcCCC-CCCCCC
Q 037063 258 W-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALGSK-DMDTLG 331 (588)
Q Consensus 258 ~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~~-d~~~l~ 331 (588)
. .+..+ +++|+++++ +++++|++++++|+||.++| +++| ++|+++|+++|+|+++.... +-....
T Consensus 157 ~~~~~~~-~~~l~~~l~--------~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~ 227 (409)
T 2gb3_A 157 MEEGFAI-PQNLESFIN--------ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFAS 227 (409)
T ss_dssp GGGTSCC-CTTGGGGCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCC
T ss_pred CCCCCcc-HHHHHHhhC--------cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCC
Confidence 3 12334 788887776 57899999999999999987 5667 88999999999999976531 101111
Q ss_pred -CCC-CCCcEEEeccCccCCCCCCc--eEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 332 -LSL-FKPDFLICSFYKIFGENPSG--FGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 332 -l~~-~~~D~vv~S~~K~~G~~P~G--~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
+.. .+.|+++.|++|++| +.| +|++++++ ++++.+...... .. +.+
T Consensus 228 ~~~~~~~~~i~~~s~sK~~g--~~G~r~G~~~~~~~~l~~~l~~~~~~--------------------------~~-~~~ 278 (409)
T 2gb3_A 228 ALSIESDKVVVIDSVSKKFS--ACGARVGCLITRNEELISHAMKLAQG--------------------------RL-APP 278 (409)
T ss_dssp GGGSCCTTEEEEEESTTTTT--CGGGCCEEEECSCHHHHHHHHHHHHH--------------------------SC-CCC
T ss_pred ccccCCCCEEEEecchhccC--CccceEEEEEECcHHHHHHHHHHHhc--------------------------cC-CCC
Confidence 221 347999999999998 446 89999998 777665432211 00 122
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEE-eCCCCCCCcccEEEEEeecCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRI-YGPKVMFDRGPSLAFNVFDWNG 485 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i-~~p~~~~~rg~iv~f~~~~~~g 485 (588)
.... +++.++|+.... +++++.++.+.+++++.+.|.++ ++++ +.| ..+.++.+.+.+
T Consensus 279 ~~~~---~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~----~~~~~~~~~~~~--- 337 (409)
T 2gb3_A 279 LLEQ---IGSVGLLNLDDS-FFDFVRETYRERVETVLKKLEEH----------GLKRFTKP----SGAFYITAELPV--- 337 (409)
T ss_dssp HHHH---HHHHHHHTCCHH-HHHHHHHHHHHHHHHHHHHHHHT----------TCCCBCCC----SBSSEEEEECSS---
T ss_pred HHHH---HHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHHc----------CceeeeCC----CeeEEEEEEeCC---
Confidence 2111 333445532111 36778888899999999999874 2333 332 123333335542
Q ss_pred CCcCHHHHHHHHHhC------CcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHH
Q 037063 486 TRIDPALVQKLADRH------NISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLW 559 (588)
Q Consensus 486 ~~i~~~~v~~~l~~~------gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li 559 (588)
.+...+.+.|.++ ||.++.|..|... . ..+...||+|++ ++.|||++++
T Consensus 338 --~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~--------------~-------~~~~~~iRis~~--~~~e~i~~~~ 392 (409)
T 2gb3_A 338 --EDAEEFARWMLTDFNMDGETTMVAPLRGFYLT--------------P-------GLGKKEIRIACV--LEKDLLSRAI 392 (409)
T ss_dssp --SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSS--------------T-------TTTSSEEEEECC--SCHHHHHHHH
T ss_pred --CCHHHHHHHHHhccccccCcEEEeCchHhCCC--------------C-------CCCCCEEEEEeC--CCHHHHHHHH
Confidence 4566676666554 9999988654210 0 012238999988 8999999999
Q ss_pred HHHHHhhhh
Q 037063 560 AFVSRFLDA 568 (588)
Q Consensus 560 ~~l~~~l~~ 568 (588)
+.|++++++
T Consensus 393 ~~l~~~l~~ 401 (409)
T 2gb3_A 393 DVLMEGLKM 401 (409)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998865
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-22 Score=214.84 Aligned_cols=336 Identities=12% Similarity=0.030 Sum_probs=217.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++.+++++.+++++|++ .++|++|+|+|+.+++.++.+++||+|+ ....|++ . ...++..|++++.+++
T Consensus 41 ~~l~~~l~~~la~~~g~~----~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~-~----~~~~~~~g~~~~~~~~ 111 (418)
T 2c81_A 41 ESMERKFAKAFADFNGVP----YCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIA-T----ATAVLNVNALPVFVDV 111 (418)
T ss_dssp CCHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTH-H----HHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHh-H----HHHHHHcCCEEEEEec
Confidence 356789999999999985 2788999999999999998778999966 4556664 2 2344578999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC--CCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK--DMDTLGLS 333 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~--d~~~l~l~ 333 (588)
+..++.+|+++|+++|+ +++++|+++ |+||...|+++| ++|+++|++||+|+++..+. +...++
T Consensus 112 ~~~~~~~d~~~l~~~i~--------~~~~~v~~~---~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-- 178 (418)
T 2c81_A 112 EADTYCIDPQLIKSAIT--------DKTKAIIPV---HLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAG-- 178 (418)
T ss_dssp CTTTCSBCHHHHGGGCC--------TTEEEECCB---CCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETT--
T ss_pred CCCCCCcCHHHHHHhhC--------CCCeEEEEe---CCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecc--
Confidence 74477899999998887 678888764 589999999999 99999999999999988762 112222
Q ss_pred CCCCcEEEecc--CccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCccccccccccccccc-CCCCCccc
Q 037063 334 LFKPDFLICSF--YKIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSK-FPESSISG 409 (588)
Q Consensus 334 ~~~~D~vv~S~--~K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e-~GT~~~~~ 409 (588)
.. .|+++.|+ ||++|. + +.|+++.+ +++++.+.+....+ +.....+ ......|.+ .||..+.+
T Consensus 179 ~~-~~~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~~~~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~g 245 (418)
T 2c81_A 179 TI-GDIGAFSCQQGKVLTA-G-EGGIIVTKNPRLFELIQQLRADS-RVYCDDS---------SELMHGDMQLVKKGDIQG 245 (418)
T ss_dssp SS-SSEEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHHBTT-EEECSCG---------GGCCTTCBSEEECCSSCC
T ss_pred cc-cceEEEeccCCcccCC-C-CeEEEEECCHHHHHHHHHHHHhC-ccccccc---------cccccchhhccccccccC
Confidence 11 36777777 999994 3 56888875 46666665433221 1110000 000002211 22223222
Q ss_pred hh-hHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCC-CCcc-cEEEEEeecCCCC
Q 037063 410 VS-SKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVM-FDRG-PSLAFNVFDWNGT 486 (588)
Q Consensus 410 ~~-~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~-~~rg-~iv~f~~~~~~g~ 486 (588)
.. .+..+.+++......+++.+.++.+.+++++.+.|.++ ++++++++... .... .++.+.+.+....
T Consensus 246 ~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (418)
T 2c81_A 246 SNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKI---------DGIKVMKRPPQVSRQTYYGYVFRFDPVKFG 316 (418)
T ss_dssp CBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTS---------TTEEECCCCTTEEECCCSEEEEEECGGGTT
T ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------CCcccCCCCCCCcccccEEEEEEEcccccc
Confidence 10 00112233332222246888899999999999999874 67888754321 1122 3666777531000
Q ss_pred CcCHHHHHHHHHhC-CcE---eccccccCcc---cccc-h-----------------HHHHHHHHhhhcCCCCCcCCccE
Q 037063 487 RIDPALVQKLADRH-NIS---LSCGFLQNIF---FSGE-Y-----------------EQERVRVLETRSGTNETRSGVSV 541 (588)
Q Consensus 487 ~i~~~~v~~~l~~~-gI~---v~~G~~c~~~---~~~~-~-----------------~~~~~~~l~~~~~~~~~~~g~~~ 541 (588)
.++...+.+.|.++ ||. ++.|+.+... +... + .-.....+. ...
T Consensus 317 ~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 385 (418)
T 2c81_A 317 GLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERAS-----------GQS 385 (418)
T ss_dssp TCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHH-----------HHE
T ss_pred ccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHH-----------hCE
Confidence 15677788777777 999 9888643210 0000 0 000001111 128
Q ss_pred EEEecCCCC-CHHHHHHHHHHHHHhhhh
Q 037063 542 VTAALGCLT-NFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 542 vRvSlg~~~-t~eDv~~li~~l~~~l~~ 568 (588)
||++++.++ |.|||++++++|++++++
T Consensus 386 lrl~~~~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 386 IVIHHAILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp EEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence 999999999 999999999999998764
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=221.49 Aligned_cols=315 Identities=11% Similarity=-0.008 Sum_probs=210.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhC---CCCCCC-----eEEEc-CCCchhHHHHHHHHHHhcC
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY---PFYSNP-----RLLTV-YDHENEAAALMIESSKKRG 248 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~---~~~~gd-----~ll~~-~e~~s~~~~~~~~~a~~~G 248 (588)
.++++++++.+++++|++. .+++|+|+|+|+.+++.++ ..++|| +|++. ..|++ + ...++..|
T Consensus 106 ~~l~~~l~~~la~~~g~~~---~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~--~---~~~~~~~G 177 (474)
T 1wyu_B 106 LRLMWELGEYLKALTGMDA---ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGS--N---PATASMAG 177 (474)
T ss_dssp HHHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTH--H---HHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCc---eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChh--h---HHHHHHCC
Confidence 5788999999999999963 4788999999988644332 134676 76654 44543 2 23456789
Q ss_pred CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCcc-CCHHHH-HHHHHcCcEEEEeCCCcCCCC
Q 037063 249 ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGAR-YSYMWM-SVAAEKGWHVLLDATALGSKD 326 (588)
Q Consensus 249 ~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~-~pl~~I-~~a~~~g~~vvvDaa~~~~~d 326 (588)
++++.++++ +++.+|+++|+++|+ +++++|+++++ |++|.+ .|+++| ++|+++|+++|+|+++..+.
T Consensus 178 ~~vv~v~~~-~~~~~d~~~L~~~i~--------~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~- 246 (474)
T 1wyu_B 178 YQVREIPSG-PEGEVDLEALKRELG--------PHVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAI- 246 (474)
T ss_dssp CEEEEECBC-TTSSBCHHHHHHHCS--------TTEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGT-
T ss_pred CEEEEecCC-CCCCcCHHHHHHhhC--------CCceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhh-
Confidence 999999997 678899999999998 67999999986 689998 699999 99999999999999986542
Q ss_pred CCCCCCCCCCCcEEEeccCccCCCCCC-----ceEEEEEeCcchhcccCCCCC-CCceEeeecCCCcccccccccccccc
Q 037063 327 MDTLGLSLFKPDFLICSFYKIFGENPS-----GFGCLFVKKSSASVLSGSTSS-VSTIMGIEPSFSEIIELETLDESSQS 400 (588)
Q Consensus 327 ~~~l~l~~~~~D~vv~S~~K~~G~~P~-----G~G~L~v~~~~~~~l~~~~~g-~~g~v~~~~~~~~~~~~~~~~~~~f~ 400 (588)
...+....+++|++++|+||+|+. |. |+|++++++++++.+.....+ +......... ... ...++
T Consensus 247 ~g~~~~~~~g~di~~~s~~K~~~~-p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~------~~~-~~~~~- 317 (474)
T 1wyu_B 247 MGWARPGDMGFDVVHLNLHKTFTV-PHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFD------RPK-SIGRV- 317 (474)
T ss_dssp TTTCCHHHHTCSEEECCTTTTTCC-CCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECC------CTT-CCCCS-
T ss_pred ccCCCcccCCCcEEEEeCcccccc-CCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEeccc------Ccc-cCccc-
Confidence 112222234589999999998875 64 699999999988777632211 0011000000 000 00122
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE
Q 037063 401 KFPESSISGVSSKLVECKGLDHADAL---GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA 477 (588)
Q Consensus 401 e~GT~~~~~~~~~~al~~aL~~l~~~---G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~ 477 (588)
..++.+. .++.+++.++..+ +++++.++...+++++.+.|.++ ++++..+.. ..+..++
T Consensus 318 ~~~~~~~------~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~~-~~~~~~~- 379 (474)
T 1wyu_B 318 RSFYGNF------LALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK----------GYRVPYDGP-SMHEFVA- 379 (474)
T ss_dssp SSTTSCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------TCBCSSCSS-CCSCEEE-
T ss_pred ccCcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CcEecCCCC-cceEEEE-
Confidence 3334332 2334555555543 45666888999999999999884 233321211 1111222
Q ss_pred EEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHH
Q 037063 478 FNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYR 557 (588)
Q Consensus 478 f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~ 557 (588)
.+. .+ ++...+.+.|.++||.+....+- . ...+.||+|++.+++.+|+++
T Consensus 380 -~~~--~~--~~~~~l~~~L~~~Gi~~~~~~~~-----------------~--------~~~~~lRis~~~~~t~e~id~ 429 (474)
T 1wyu_B 380 -QPP--EG--FRALDLAKGLLELGFHPPTVYFP-----------------L--------IVKEALMVEPTETEAKETLEA 429 (474)
T ss_dssp -BCS--TT--CCHHHHHHHHHHTTCCCCEESCS-----------------T--------TSTTCEEECCCTTSCHHHHHH
T ss_pred -EcC--CC--CCHHHHHHHHHHCCccccccccc-----------------c--------ccCCEEEEEeecCCCHHHHHH
Confidence 221 11 45777777777789986321110 0 112389999999999999999
Q ss_pred HHHHHHHhhhh
Q 037063 558 LWAFVSRFLDA 568 (588)
Q Consensus 558 li~~l~~~l~~ 568 (588)
+++.|++++++
T Consensus 430 ~~~~L~~~~~~ 440 (474)
T 1wyu_B 430 FAEAMGALLKK 440 (474)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHHh
Confidence 99999998865
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=215.75 Aligned_cols=331 Identities=8% Similarity=-0.009 Sum_probs=211.2
Q ss_pred CeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHH
Q 037063 111 NYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMD 190 (588)
Q Consensus 111 ~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~ 190 (588)
..++||+....+.++.+++++.+.... . ..|+. .....++|+++++
T Consensus 4 ~~i~~~~~~~~~p~~~~~~a~~~~~~~-----~---------------------------~~y~~--~~~~~~l~~~la~ 49 (347)
T 1jg8_A 4 MMIDLRSDTVTKPTEEMRKAMAQAEVG-----D---------------------------DVYGE--DPTINELERLAAE 49 (347)
T ss_dssp -CEECSCGGGCCCCHHHHHHHHTCCCC-----C---------------------------GGGTC--CHHHHHHHHHHHH
T ss_pred eEEEeccccCCCCCHHHHHHHhcCCCC-----C---------------------------cccCC--ChHHHHHHHHHHH
Confidence 468999999988888888876432210 0 00111 2345689999999
Q ss_pred HhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHH
Q 037063 191 FMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMK 270 (588)
Q Consensus 191 ~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~ 270 (588)
++|++ .+++++|+|+|+.+++.++ +++||+|++....|...+.. ...++..|++++.+ .+ +++.+|+++|++
T Consensus 50 ~~g~~----~~~~~~~gt~a~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~-~~~~~~~g~~~~~v-~~-~~~~~d~~~l~~ 121 (347)
T 1jg8_A 50 TFGKE----AALFVPSGTMGNQVSIMAH-TQRGDEVILEADSHIFWYEV-GAMAVLSGVMPHPV-PG-KNGAMDPDDVRK 121 (347)
T ss_dssp HHTCS----EEEEESCHHHHHHHHHHHH-CCTTCEEEEETTCHHHHSST-THHHHHTCCEEEEE-CE-ETTEECHHHHHH
T ss_pred HhCCc----eEEEecCcHHHHHHHHHHh-cCCCCEEEEcCcchhhhccc-cchhhccCeEEEEe-cC-CCCccCHHHHHH
Confidence 99984 3889999999999998888 88999977655444212211 12445679999988 54 567789999999
Q ss_pred HHhhhccccCCCcceEEEEeCCCCCC-CccCCHH---HH-HHHHHcCcEEEEeCCCcC------CCCCCCCCCCCCCCcE
Q 037063 271 KIVGKRKKKKKKKRGLFVFPLQSKVT-GARYSYM---WM-SVAAEKGWHVLLDATALG------SKDMDTLGLSLFKPDF 339 (588)
Q Consensus 271 ~i~~~~~~~~~~~t~Lv~~~~~sn~t-G~~~pl~---~I-~~a~~~g~~vvvDaa~~~------~~d~~~l~l~~~~~D~ 339 (588)
+|+.. ....+++++|++++++|+| |..+|++ +| ++|+++|++|++|+++.. +.+..++. ..+|.
T Consensus 122 ~i~~~--~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~ 196 (347)
T 1jg8_A 122 AIRPR--NIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYA---GYADS 196 (347)
T ss_dssp HSCCS--CTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHH---HTCSE
T ss_pred Hhccc--cccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhc---ccccE
Confidence 98710 0001268999999999999 9999975 46 889999999999998633 21122221 13788
Q ss_pred EEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHH
Q 037063 340 LICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKG 419 (588)
Q Consensus 340 vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~a 419 (588)
+++|+||++|. |.| |+++.++++++.+...... ..++........ ++...+
T Consensus 197 ~~~s~sK~l~~-~~G-~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~-~~~~~~ 247 (347)
T 1jg8_A 197 VMFCLSKGLCA-PVG-SVVVGDRDFIERARKARKM--------------------------LGGGMRQAGVLA-AAGIIA 247 (347)
T ss_dssp EEEESSSTTCC-SSC-EEEEECHHHHHHHHHHHHH--------------------------HTCCCSSTHHHH-HHHHHH
T ss_pred EEEecccccCC-Cce-EEEEcCHHHHHHHHHHHHH--------------------------cCCchhHHHHHH-HHHHHH
Confidence 89999998884 544 3556666666554321100 001111111100 111233
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHh
Q 037063 420 LDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADR 499 (588)
Q Consensus 420 L~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~ 499 (588)
++.. .+.+.+ ..+.++++.+.|.++ ++++..+ ...++++.+.+.+. + ++...+.+.|.+
T Consensus 248 l~~~----~~~~~~-~~~~~~~l~~~L~~~----------~~~~~~~---~~~~~~~~~~~~~~-~--~~~~~~~~~l~~ 306 (347)
T 1jg8_A 248 LTKM----VDRLKE-DHENARFLALKLKEI----------GYSVNPE---DVKTNMVILRTDNL-K--VNAHGFIEALRN 306 (347)
T ss_dssp HHHS----STTHHH-HHHHHHHHHHHHHHH----------TCBCCGG---GCCSSEEEEECTTS-S--SCHHHHHHHHHH
T ss_pred HHHH----HHHHHH-HHHHHHHHHHHHHhc----------CceeccC---CCcceEEEEEcccc-c--CCHHHHHHHHHH
Confidence 4321 122222 234556777777764 1222111 13467777776521 1 456777777778
Q ss_pred CCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 500 HNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 500 ~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+||.++.+. . ..||+|++.+++.||++++++.|++++++
T Consensus 307 ~gi~v~~~~----------------------------~--~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 307 SGVLANAVS----------------------------D--TEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp HTEECEEEE----------------------------T--TEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEecCC----------------------------C--CeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 899987541 1 18999999999999999999999998753
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-22 Score=211.97 Aligned_cols=321 Identities=11% Similarity=0.068 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhC------CCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEE
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY------PFYSNPRLL-TVYDHENEAAALMIESSKKRGARV 251 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~------~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v 251 (588)
...+++|+.+++++|++ .++|++|+|+|+.+++.++ .+++||+|+ ...+|++ .. ..++..|+++
T Consensus 34 ~~~~~l~~~la~~~~~~----~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~-~~----~~~~~~g~~~ 104 (390)
T 3b8x_A 34 EYVKQYETQFAKTFGSK----YAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWST-TY----YPLQQYGLRV 104 (390)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHH-HH----HHHHHTTCEE
T ss_pred hHHHHHHHHHHHHHCCC----cEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHH-HH----HHHHHcCCEE
Confidence 45679999999999985 3889999999999999998 578899965 5667765 22 2345689999
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC--CCC
Q 037063 252 SSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK--DMD 328 (588)
Q Consensus 252 ~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~--d~~ 328 (588)
+.++++..++.+|+++|+++|+ +++++|++++ ++|...|+++| ++|+++|+++|+|+++..+. +..
T Consensus 105 ~~~~~~~~~~~~d~~~l~~~i~--------~~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~ 173 (390)
T 3b8x_A 105 KFVDIDINTLNIDIESLKEAVT--------DSTKAILTVN---LLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNK 173 (390)
T ss_dssp EEECBCTTTCSBCHHHHHHHCC--------TTEEEEEEEC---GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTE
T ss_pred EEEecCccccCcCHHHHHHHhC--------cCCeEEEEEC---CccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCc
Confidence 9999984458899999999997 6789999874 68999999999 99999999999999998762 222
Q ss_pred CCCCCCCCCcEEEecc---CccCCCCCCceEEEEEeC-cchhcccCCCCCCC-ce---EeeecCCCcccccccccccccc
Q 037063 329 TLGLSLFKPDFLICSF---YKIFGENPSGFGCLFVKK-SSASVLSGSTSSVS-TI---MGIEPSFSEIIELETLDESSQS 400 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~---~K~~G~~P~G~G~L~v~~-~~~~~l~~~~~g~~-g~---v~~~~~~~~~~~~~~~~~~~f~ 400 (588)
.++. .+|+.++|+ ||+.+ |.| |++++++ ++.+.+++...++. +. ............+. .. ..|+
T Consensus 174 ~~g~---~~~~~~~s~~~~k~~~~--g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~~ 245 (390)
T 3b8x_A 174 CAGT---FGLMGTFSSFYSNHIAT--MEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFE-ES-FKFV 245 (390)
T ss_dssp ETTS---SSSEEEEECCTTSSSCS--SSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTT-SS-SCBC
T ss_pred cccc---ccceEEEEccCCCCCcc--CCc-eEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccc-cc-ccee
Confidence 2331 146666553 55544 556 8998887 45555544322210 00 00000000000000 00 0222
Q ss_pred cCC----CCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE
Q 037063 401 KFP----ESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL 476 (588)
Q Consensus 401 e~G----T~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv 476 (588)
..| +.++.+. .++..++. ++.+.++.+++++++.+.|.++ ++++++++. .+.+.+
T Consensus 246 ~~g~~~~~~~~~aa-------~~l~~l~~--l~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~~~---~~~~~~ 304 (390)
T 3b8x_A 246 LPGYNVRPLEMSGA-------IGIEQLKK--LPRFISVRRKNAEYFLDKFKDH---------PYLDVQQET---GESSWF 304 (390)
T ss_dssp SCCCBCCCCHHHHH-------HHHHHHHH--HHHHHHHHHHHHHHHHHHHTTC---------SSEEECCCC---SBCCCC
T ss_pred ccccccCcCHHHHH-------HHHHHHHH--HHHHHHHHHHHHHHHHHHhcCC---------CCcccCCCC---CCcccE
Confidence 233 3333322 23333333 4778889999999999999874 678876642 233443
Q ss_pred --EEEeecCCCCCcCHHHHHHHHHhCCcEecc---ccccCc-cccc--c-----hHHHHHHHHhhhcCCCCCcCCccEEE
Q 037063 477 --AFNVFDWNGTRIDPALVQKLADRHNISLSC---GFLQNI-FFSG--E-----YEQERVRVLETRSGTNETRSGVSVVT 543 (588)
Q Consensus 477 --~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~---G~~c~~-~~~~--~-----~~~~~~~~l~~~~~~~~~~~g~~~vR 543 (588)
.+.+.+..| ++.+.+.+.|.++||.++. |+.|.. .... . ... ....+.. ..||
T Consensus 305 ~~~i~~~~~~~--~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~l~ 370 (390)
T 3b8x_A 305 GFSFIIKKDSG--VIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVD-NAEYLDK-----------NGLF 370 (390)
T ss_dssp EEEEEECTTSC--CCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCH-HHHHHHH-----------HEEE
T ss_pred EEEEEecCcCc--ccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCCh-HHHHHhc-----------CEEE
Confidence 334442112 4678888888889999997 566653 2110 0 000 0111122 2899
Q ss_pred EecCCCCCHHHHHHHHHHH
Q 037063 544 AALGCLTNFEDTYRLWAFV 562 (588)
Q Consensus 544 vSlg~~~t~eDv~~li~~l 562 (588)
+|++.++|.|||+++++.|
T Consensus 371 l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 371 VGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp EECCSSCCHHHHHHHHHHT
T ss_pred eeCCCCCCHHHHHHHHHhh
Confidence 9999999999999999876
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.9e-23 Score=217.70 Aligned_cols=309 Identities=15% Similarity=0.132 Sum_probs=208.0
Q ss_pred HHHHHHHHHHh----CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 182 SKIRKRIMDFM----NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 182 ~~~r~~ia~~l----ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++|+.+++++ |.+.+...|++|+|+|+|+.+++.++ +++||+|++. ..|++ . ...++..|++++.++.
T Consensus 78 ~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~-~~~gd~vl~~~p~~~~-~----~~~~~~~g~~~~~v~~ 151 (407)
T 2zc0_A 78 PELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVL-IDPGDVVITENPSYIN-T----LLAFEQLGAKIEGVPV 151 (407)
T ss_dssp HHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCHH-H----HHHHHTTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHH-H----HHHHHHcCCEEEEccc
Confidence 46777777777 84333345999999999999999999 8899997654 44443 2 3455778999999998
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEE-EEeCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCCCcCCC-C---C
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLF-VFPLQSKVTGARYSYM---WM-SVAAEKGWHVLLDATALGSK-D---M 327 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv-~~~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa~~~~~-d---~ 327 (588)
+ +++ +|+++|+++++.. +....++++| ++++++|+||.++|++ +| ++|+++|+++|+|+++.... + .
T Consensus 152 ~-~~~-~d~~~l~~~l~~~--~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~ 227 (407)
T 2zc0_A 152 D-NDG-MRVDLLEEKIKEL--KAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDI 227 (407)
T ss_dssp E-TTE-ECHHHHHHHHHHH--HHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSC
T ss_pred C-CCC-CCHHHHHHHHHhh--hcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCC
Confidence 7 444 8999999998610 0011367886 6889999999999998 67 89999999999999976531 0 1
Q ss_pred CCC-CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 328 DTL-GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 328 ~~l-~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
..+ .+...+.++++.|++|++| +..++|++++++++++.+....... ..++..
T Consensus 228 ~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~ 281 (407)
T 2zc0_A 228 VPLKALDNEGRVIVAGTLSKVLG-TGFRIGWIIAEGEILKKVLMQKQPI-------------------------DFCAPA 281 (407)
T ss_dssp CCGGGGCSSCCEEEEEESTTTTC-TTSCCEEEECCHHHHHHHHHHHTTT-------------------------TSSSCH
T ss_pred CChhhcCCCCCEEEEcccccccC-CCcceEEEecCHHHHHHHHHHHHhh-------------------------cCCCCH
Confidence 111 1112235688999999999 3345899999887776654322110 001111
Q ss_pred ccchhhHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCC
Q 037063 407 ISGVSSKLVECKGLDHA--DALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWN 484 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l--~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~ 484 (588)
+.. .++..+|+.. +...++++.++.+.+++++.+.|.++ .++++++.| ..+.++.+.+.+
T Consensus 282 ~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--------~~~~~~~~~----~~~~~~~~~~~~-- 343 (407)
T 2zc0_A 282 ISQ----YIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENH--------LPNAEFTKP----IAGMFVMFFLPE-- 343 (407)
T ss_dssp HHH----HHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHH--------CTTSCBCCC----SBSSEEEEECST--
T ss_pred HHH----HHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCEEecC----CCcEEEEEEcCC--
Confidence 111 2333444432 20235677888888999999999873 244544443 234566677643
Q ss_pred CCCcCHHHHHHHHHhC-CcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 485 GTRIDPALVQKLADRH-NISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 485 g~~i~~~~v~~~l~~~-gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
+ ++...+.+.|.++ ||.++.|..|.... .+..+||+|++.. +.+|++++++.|+
T Consensus 344 ~--~~~~~l~~~l~~~~gi~v~~g~~~~~~~----------------------~~~~~iRis~~~~-~~~~i~~~~~~l~ 398 (407)
T 2zc0_A 344 G--ADGISFANELMEREGVVVVPGKPFYTDE----------------------SGKNAIRLNFSRP-SKEEIPIGIKKLA 398 (407)
T ss_dssp T--CCHHHHHHHHHHHTCEECBCSGGGCSSS----------------------CCTTEEEEECSSS-CTTHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHhCCeEEECchhccCCC----------------------CCCCeEEEEeCCC-CHHHHHHHHHHHH
Confidence 1 4566666666555 99999886653110 1223899999987 8999999999999
Q ss_pred Hhhhhh
Q 037063 564 RFLDAD 569 (588)
Q Consensus 564 ~~l~~~ 569 (588)
+++++.
T Consensus 399 ~~l~~~ 404 (407)
T 2zc0_A 399 KLYKEK 404 (407)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988653
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=214.41 Aligned_cols=327 Identities=13% Similarity=0.074 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....++|+.|++++|+ + .|++|+|+|+|+.+++.++.+++||+|+ ....|++. . ..++..|++++.++++
T Consensus 32 ~~~~~l~~~la~~~~~--~--~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~-~----~~~~~~g~~~~~v~~~ 102 (394)
T 1o69_A 32 EFVNRFEQSVKDYSKS--E--NALALNSATAALHLALRVAGVKQDDIVLASSFTFIAS-V----APICYLKAKPVFIDCD 102 (394)
T ss_dssp HHHHHHHHHHHHHHCC--S--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGG-T----HHHHHTTCEEEEECBC
T ss_pred hHHHHHHHHHHHHhCC--C--cEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHH-H----HHHHHcCCEEEEEEeC
Confidence 5677999999999998 2 4999999999999999998778999965 55666652 2 2334579999999998
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCC--CCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDM--DTLGLSL 334 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~--~~l~l~~ 334 (588)
.++.+|+++|+++|++ . ..++++|++++ ++|...|+++| ++|+++|+++|+|+++..+... ..++ +.
T Consensus 103 -~~~~~d~~~l~~~i~~----~-~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-~~ 172 (394)
T 1o69_A 103 -ETYNIDVDLLKLAIKE----C-EKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALG-TF 172 (394)
T ss_dssp -TTSSBCHHHHHHHHHH----C-SSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETT-SS
T ss_pred -CCCCcCHHHHHHHHhc----c-cCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcccc-cc
Confidence 7788999999999972 0 01689999886 79999999999 9999999999999998864111 1111 11
Q ss_pred CCCcEEEeccCccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhH
Q 037063 335 FKPDFLICSFYKIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSK 413 (588)
Q Consensus 335 ~~~D~vv~S~~K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~ 413 (588)
..+|++++|.+|.+| |.++|+++++ +++++.+...... +... .+ .+.. ....| ..||+++.+.
T Consensus 173 ~~~~~~s~s~~K~l~--~~~~G~~~~~~~~l~~~l~~~~~~--~~~~-~~------~~~~-~~~g~-~~~~~~~~aa--- 236 (394)
T 1o69_A 173 GEFGVYSYNGNKIIT--TSGGGMLIGKNKEKIEKARFYSTQ--AREN-CL------HYEH-LDYGY-NYRLSNVLGA--- 236 (394)
T ss_dssp SSEEEEECCTTSSSC--CSSCEEEEESCHHHHHHHHHHTBT--CCCS-SS------SCCC-SSCCC-BCBCCHHHHH---
T ss_pred cCcEEEEEeCCccCC--CCCceEEEECCHHHHHHHHHHHHh--cccc-Cc------cccc-cccCc-ccCcCHHHHH---
Confidence 237888888899888 6789999996 5777666543211 1100 00 0000 00022 3334444332
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc--cEEEEEeecCC-------
Q 037063 414 LVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG--PSLAFNVFDWN------- 484 (588)
Q Consensus 414 ~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg--~iv~f~~~~~~------- 484 (588)
.++..++. ++++.++.+.+++++.+.|.+ . ++++++.. ..++ .++.|.+.+..
T Consensus 237 ----~~l~~l~~--l~~~~~~~~~~~~~l~~~L~~---------~--~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~ 298 (394)
T 1o69_A 237 ----IGVAQMEV--LEQRVLKKREIYEWYKEFLGE---------Y--FSFLDELE-NSRSNRWLSTALINFDKNELNACQ 298 (394)
T ss_dssp ----HHHHHHTT--HHHHHHHHHHHHHHHHHHHTT---------T--EECCCCCT-TEECCCSSEEEEESCCGGGSCCCC
T ss_pred ----HHHHHHHH--HHHHHHHHHHHHHHHHHHhcc---------c--ccccCCCC-CCcceeEEEEEEecchhhcccccc
Confidence 22222221 466778889999999999976 3 55554421 1122 25677765310
Q ss_pred --------CC--CcCHHHHHHHHHhCCcEecccccc---Ccccccc-h-HHHHHHHHhhhcCCCCCcCCccEEEEecCCC
Q 037063 485 --------GT--RIDPALVQKLADRHNISLSCGFLQ---NIFFSGE-Y-EQERVRVLETRSGTNETRSGVSVVTAALGCL 549 (588)
Q Consensus 485 --------g~--~i~~~~v~~~l~~~gI~v~~G~~c---~~~~~~~-~-~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~ 549 (588)
|. .++...+.+.|.++||.++.|..| .+.+... . .-.....+.. ..+|++.+.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 367 (394)
T 1o69_A 299 KDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQ-----------KGICLPSGTA 367 (394)
T ss_dssp EEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHH-----------HEEEECCCTT
T ss_pred ccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhc-----------CeEEccCCCC
Confidence 00 135677888888899999999554 2221110 0 0000111111 1677777999
Q ss_pred CCHHHHHHHHHHHHHhhhhh
Q 037063 550 TNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 550 ~t~eDv~~li~~l~~~l~~~ 569 (588)
+|.|||+++++.|+++++..
T Consensus 368 ~t~edi~~~~~~l~~~~~~~ 387 (394)
T 1o69_A 368 MSKDDVYEISKLILKSIKAG 387 (394)
T ss_dssp CCHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999887654
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-22 Score=210.45 Aligned_cols=303 Identities=12% Similarity=0.019 Sum_probs=203.9
Q ss_pred hHHHHHHHHHHHHHhCCC---CCCceEEEecCHHHHHHHHHHhCCCCCC-----CeEEEc-CCCchhHHHHHHHHHHhcC
Q 037063 178 SELESKIRKRIMDFMNIS---EDDYTLVFTANQSSAFKLLAESYPFYSN-----PRLLTV-YDHENEAAALMIESSKKRG 248 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~---~~e~~vvft~g~T~al~lv~~s~~~~~g-----d~ll~~-~e~~s~~~~~~~~~a~~~G 248 (588)
.++.+.+.+.+.+.+|.+ ++ ..|++|+|+++|+.+++.++ .++| |+|++. ..|+. . ...++..|
T Consensus 69 ~~lr~~la~~l~~~~g~~~~~~~-~~i~~t~g~~~al~~~~~~~-~~~g~~~~~d~vl~~~p~~~~-~----~~~~~~~g 141 (396)
T 3jtx_A 69 PELRQACANWLKRRYDGLTVDAD-NEILPVLGSREALFSFVQTV-LNPVSDGIKPAIVSPNPFYQI-Y----EGATLLGG 141 (396)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCTT-TSEEEESSHHHHHHHHHHHH-CCC---CCCCEEEEEESCCHH-H----HHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCCCCCC-CeEEEcCCcHHHHHHHHHHH-hCCCCccCCCEEEEcCCCcHh-H----HHHHHHcC
Confidence 345555556666666853 54 14999999999999999999 7886 676654 44442 2 34567789
Q ss_pred CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcCC
Q 037063 249 ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALGS 324 (588)
Q Consensus 249 ~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~~ 324 (588)
++++.++++..+..+|.++|++++. +++++|++++++|+||..+|.++ | ++|+++|+++|+|+++...
T Consensus 142 ~~~~~v~~~~~g~~~d~~~l~~~~~--------~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~ 213 (396)
T 3jtx_A 142 GEIHFANCPAPSFNPDWRSISEEVW--------KRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEI 213 (396)
T ss_dssp CEEEEEECCTTTCCCCGGGSCHHHH--------HTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTC
T ss_pred CEEEEeecCCCCCccCHHHHHHhhc--------cCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence 9999999863444689999999998 57999999999999999999888 6 7899999999999996642
Q ss_pred C-CC-CCCCC--------CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 325 K-DM-DTLGL--------SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 325 ~-d~-~~l~l--------~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
. +- ..+.. .....++++.|++|.+|.+..++|+++.++++++.+......
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~-------------------- 273 (396)
T 3jtx_A 214 YFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTY-------------------- 273 (396)
T ss_dssp CSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHH--------------------
T ss_pred ccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHHhh--------------------
Confidence 1 11 11110 014478999999998774334589999888877665432110
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
..++.+.... +++..+|+..+ .++++.++++.+.+++.+.|.++ +.++.| ..+.
T Consensus 274 ------~~~~~~~~~~---~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~l~~~-----------~~~~~~----~~~~ 327 (396)
T 3jtx_A 274 ------HGSAMSIPVQ---RASIAAWDDEQ--HVIDNRRLYQEKFERVIPILQQV-----------FDVKLP----DASF 327 (396)
T ss_dssp ------HTCCCCHHHH---HHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHTTT-----------SCCCCC----SSSS
T ss_pred ------cccCCCHHHH---HHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHhc-----------CCccCC----CeeE
Confidence 1112222222 33344554311 25777888888888888888763 112222 2244
Q ss_pred EEEEEeecCCCCCcCHHHHH-HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHH
Q 037063 475 SLAFNVFDWNGTRIDPALVQ-KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFE 553 (588)
Q Consensus 475 iv~f~~~~~~g~~i~~~~v~-~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~e 553 (588)
++.+.+.+ .+...+. ++++++||.+++|..|...... ...+..+||+|++. +.+
T Consensus 328 ~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~------------------~~~~~~~iRis~~~--~~~ 382 (396)
T 3jtx_A 328 YIWLKVPD-----GDDLAFARNLWQKAAIQVLPGRFLARDTEQ------------------GNPGEGYVRIALVA--DVA 382 (396)
T ss_dssp EEEEECTT-----SCHHHHHHHHHHHHCEECEEGGGGCCCCTT------------------CCTTTTEEEEECCS--CHH
T ss_pred EEEEECCC-----CCHHHHHHHHHHHCCEEEeCChHhCCcccc------------------cCCCCCeEEEEEcC--CHH
Confidence 55556654 3455554 4557789999999877432000 00223499999876 999
Q ss_pred HHHHHHHHHHHhh
Q 037063 554 DTYRLWAFVSRFL 566 (588)
Q Consensus 554 Dv~~li~~l~~~l 566 (588)
|++++++.|++++
T Consensus 383 ~i~~~l~~l~~~l 395 (396)
T 3jtx_A 383 TCVKAAEDIVSLY 395 (396)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.4e-23 Score=215.93 Aligned_cols=324 Identities=11% Similarity=0.103 Sum_probs=220.2
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|+|.++. |+.|+.+.+++.+.+... .+. + + .| ..+..++
T Consensus 43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~--~~~-~--------------------~-----~~---~~~~~~~ 91 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETL--MAM-P--------------------Q-----TL---PTPMRGE 91 (395)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC--CCC-C--------------------T-----TS---CCHHHHH
T ss_pred CCCEEEEccCccccccCCCCCHHHHHHHHHHHHhC--CCC-c--------------------c-----cc---CCHHHHH
Confidence 56789998654 667888888886665321 111 0 0 01 1456789
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEE-EcCCCchhHHHHHHHHHHhcCCE-----------
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLL-TVYDHENEAAALMIESSKKRGAR----------- 250 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~----------- 250 (588)
++++++++++++++ .|+||+|+|+|+.+++.++. +.+|++|+ ....||+....++ +..|.+
T Consensus 92 l~~~la~~~~~~~~--~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~----~~~g~~~~~~~~~p~~~ 165 (395)
T 1vef_A 92 FYRTLTAILPPELN--RVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSL----SVTWEPKYREPFLPLVE 165 (395)
T ss_dssp HHHHHHHTSCTTEE--EEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHH----HTCCCHHHHGGGCSCSS
T ss_pred HHHHHHHhcCCCcC--EEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhh----hhcCCcccccccCCCCC
Confidence 99999999988654 49999999999999988751 25688855 5556665333232 233543
Q ss_pred -EEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCc-C
Q 037063 251 -VSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATAL-G 323 (588)
Q Consensus 251 -v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~-~ 323 (588)
+..++. .|+++|+++|+ +++++|++.+++|+||.+.| +++| ++|+++|+++|+|+++. +
T Consensus 166 ~~~~~~~------~d~~~l~~~i~--------~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~ 231 (395)
T 1vef_A 166 PVEFIPY------NDVEALKRAVD--------EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGM 231 (395)
T ss_dssp CEEEECT------TCHHHHHHHCC--------TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred CeeEeCC------CcHHHHHHHhc--------cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 333332 47899999987 67899999999999999998 9999 99999999999999987 3
Q ss_pred CCCCC--CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccccccccc
Q 037063 324 SKDMD--TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSK 401 (588)
Q Consensus 324 ~~d~~--~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e 401 (588)
+..-. .++.....+|++ |++|.+|. +.++|++++++++++.+.....+ +
T Consensus 232 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~-g~~~G~~~~~~~~~~~l~~~~~~--~------------------------ 282 (395)
T 1vef_A 232 GRTGKRFAFEHFGIVPDIL--TLAKALGG-GVPLGVAVMREEVARSMPKGGHG--T------------------------ 282 (395)
T ss_dssp TTTSSSSTHHHHTCCCSEE--EECGGGGT-TSSCEEEEEEHHHHHTSCTTSSC--C------------------------
T ss_pred ccCCchhHhhhcCCCCCEE--EEcccccC-CCceEEEEehHHHHhhhccCCcC--C------------------------
Confidence 21101 111112237866 77998885 67899999999877766542111 0
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEee
Q 037063 402 FPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVF 481 (588)
Q Consensus 402 ~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~ 481 (588)
..+.+... .+++.++|+.+.. +.+.++++.+++++.+.|.++. .+.+.... ..+.++.+.+.
T Consensus 283 ~~~~~~~~---~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~-------~~~~~~~~-----~~g~~~~~~~~ 344 (395)
T 1vef_A 283 TFGGNPLA---MAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIP-------SPKIREVR-----GMGLMVGLELK 344 (395)
T ss_dssp SSTTCHHH---HHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSC-------CTTEEEEE-----EETTEEEEEES
T ss_pred CcCCCHHH---HHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhh-------cCceEEEE-----EEEEEEEEEEc
Confidence 00122222 2455567777654 4577888999999999998862 22222111 24678888775
Q ss_pred cCCCCCcCHHHHHHHHH-hCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHH
Q 037063 482 DWNGTRIDPALVQKLAD-RHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 482 ~~~g~~i~~~~v~~~l~-~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~ 560 (588)
+ +...+.+.|. ++||.++.+. . ..||++++++++.+|++++++
T Consensus 345 ~------~~~~l~~~l~~~~gi~v~~~~----------------------------~--~~iRi~~~~~~~~~~i~~~~~ 388 (395)
T 1vef_A 345 E------KAAPYIARLEKEHRVLALQAG----------------------------P--TVIRFLPPLVIEKEDLERVVE 388 (395)
T ss_dssp S------CSHHHHHHHHHHHCEECEESS----------------------------T--TEEEECCCTTCCHHHHHHHHH
T ss_pred C------hHHHHHHHHHHHCCeEEecCC----------------------------C--CEEEEeCCCCCCHHHHHHHHH
Confidence 4 1345555555 8899987641 1 289999999999999999999
Q ss_pred HHHHhhh
Q 037063 561 FVSRFLD 567 (588)
Q Consensus 561 ~l~~~l~ 567 (588)
.|+++++
T Consensus 389 ~l~~~l~ 395 (395)
T 1vef_A 389 AVRAVLA 395 (395)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9998763
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-23 Score=215.47 Aligned_cols=311 Identities=11% Similarity=0.058 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....++|+.+++++|++ .++||+|+|+|+.+++.++.+++||+|+ ....|++ . ...++..|++++.++++
T Consensus 35 ~~~~~l~~~la~~~~~~----~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~-~----~~~~~~~G~~~~~~~~~ 105 (367)
T 3nyt_A 35 PEVTELEDRLADFVGAK----YCISCANGTDALQIVQMALGVGPGDEVITPGFTYVA-T----AETVALLGAKPVYVDID 105 (367)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTH-H----HHHHHHTTCEEEEECBC
T ss_pred hHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHH-H----HHHHHHcCCEEEEEecC
Confidence 45679999999999985 3999999999999999998788999966 5566664 2 23456789999999998
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC--CCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK--DMDTLGLSL 334 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~--d~~~l~l~~ 334 (588)
..++.+|+++|+++|+ +++++|+ ++|++|...|+++| ++|+++|+++|+|+++..+. +...++ .
T Consensus 106 ~~~~~~d~~~l~~~i~--------~~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~--~ 172 (367)
T 3nyt_A 106 PRTYNLDPQLLEAAIT--------PRTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSC--N 172 (367)
T ss_dssp TTTCSBCGGGTGGGCC--------TTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETT--S
T ss_pred CccCCcCHHHHHHhcC--------cCCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeecc--C
Confidence 5558899999999887 6888887 67799999999999 99999999999999988652 122222 1
Q ss_pred CCCcEEEecc--CccCCCCCCc-eEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCC-CCCccc
Q 037063 335 FKPDFLICSF--YKIFGENPSG-FGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP-ESSISG 409 (588)
Q Consensus 335 ~~~D~vv~S~--~K~~G~~P~G-~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G-T~~~~~ 409 (588)
+ .|++++|| +|++| +.| .|+++.++ ++.+.++..... |.... +. ....| +.....
T Consensus 173 ~-~di~~~Sf~~~K~l~--~~g~gg~~~~~~~~l~~~~~~~~~~--g~~~~---------~~------~~~~g~~~~~~~ 232 (367)
T 3nyt_A 173 L-STVACTSFFPSAPLG--CYGDGGAIFTNDDELATAIRQIARH--GQDRR---------YH------HIRVGVNSRLDT 232 (367)
T ss_dssp S-SSEEEEECCTTSSSC--CSSCCEEEEESCHHHHHHHHHHTBT--TEEET---------TE------ECSCCCBCCCCH
T ss_pred C-CCEEEEECCCCCcCC--CcCceeEEEeCCHHHHHHHHHHHhc--CCCcC---------ce------eeccCcCCCccH
Confidence 2 29999997 79998 434 56666654 455555543322 11100 00 00122 222222
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCC-CCcccEEEEEeecCCCCCc
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVM-FDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~-~~rg~iv~f~~~~~~g~~i 488 (588)
+ ....++..++. ++.+.++.+++++++.+.|.++ + +++...... .....++.+.+.
T Consensus 233 ~----~aa~~~~~l~~--~~~~~~~~~~~~~~~~~~L~~~-------~---~~~~~~~~~~~~~~~~~~~~~~------- 289 (367)
T 3nyt_A 233 L----QAAILLPKLEI--FEEEIALRQKVAAEYDLSLKQV-------G---IGTPFIEVNNISVYAQYTVRMD------- 289 (367)
T ss_dssp H----HHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHT-------T---CCCCCCCTTEECCCSSEEEECS-------
T ss_pred H----HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccC-------C---eeccCCCCCCceeeEEEEEEeC-------
Confidence 2 22233333433 5778888899999999999985 1 222111110 011123333332
Q ss_pred CHHHHHHHHHhCCcEeccccccCcccccchH-----HHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 489 DPALVQKLADRHNISLSCGFLQNIFFSGEYE-----QERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 489 ~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~-----~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
+.+.+.+.|.++||.++.+..+.......+. -.....+.. ..||++++..+|.|||+++++.|+
T Consensus 290 ~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~lp~~~~~t~~~i~~v~~~~~ 358 (367)
T 3nyt_A 290 NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAAT-----------QVMSLPMHPYLDTASIKIICAALT 358 (367)
T ss_dssp SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHH-----------HEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHh-----------CeEEccCCCCCCHHHHHHHHHHHH
Confidence 3677888888899999887532111111110 001111222 289999999999999999999998
Q ss_pred Hh
Q 037063 564 RF 565 (588)
Q Consensus 564 ~~ 565 (588)
++
T Consensus 359 ~~ 360 (367)
T 3nyt_A 359 NL 360 (367)
T ss_dssp C-
T ss_pred HH
Confidence 75
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=220.68 Aligned_cols=345 Identities=12% Similarity=0.006 Sum_probs=227.1
Q ss_pred CCCCCCCCHHHHHHhhhhccc-CcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchh-HHHHHHHHHHHHHhCC
Q 037063 117 YIGHGLFSYSQMHSCSSNVHS-SAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEES-ELESKIRKRIMDFMNI 194 (588)
Q Consensus 117 ~a~~gl~~~~~~~~~~~~~~~-~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~-~~~~~~r~~ia~~lga 194 (588)
.++.+++++.+++++.+.+.. ...++|. +....|.... .+.+.+|+++++++|+
T Consensus 29 ~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------------------------~~~~~g~~~~~~~e~~ar~~la~~~g~ 84 (407)
T 2dkj_A 29 IASENFVSKQVREAVGSVLTNKYAEGYPG------------------------ARYYGGCEVIDRVESLAIERAKALFGA 84 (407)
T ss_dssp CTTCCCCCHHHHHHHTSGGGGCCCCEETT------------------------EESSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCCCCCHHHHHHHHhhhhcCcccCCCc------------------------ccccCCchHHHHHHHHHHHHHHHHhCC
Confidence 456666799999998766532 1222221 1111111111 3444588899999999
Q ss_pred CCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCC--EEEEEeccCCCCccCHHHHHHH
Q 037063 195 SEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGA--RVSSAEFAWPNLRIHSGKLMKK 271 (588)
Q Consensus 195 ~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~--~v~~v~~~~~~~~i~~e~l~~~ 271 (588)
++ ..+++.++|+|+.+++.++ +++||+|++ ...|++ .... ...++..|+ .++.++++..++.+|+++|+++
T Consensus 85 ~~---~~i~~~sGt~a~~~~~~~~-~~~gd~Vl~~~~~~~~-~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~ 158 (407)
T 2dkj_A 85 AW---ANVQPHSGSQANMAVYMAL-MEPGDTLMGMDLAAGG-HLTH-GSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRL 158 (407)
T ss_dssp SE---EECCCSSHHHHHHHHHHHH-CCTTCEEEEECGGGTC-CGGG-TCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHH
T ss_pred Cc---ceEEecchHHHHHHHHHHh-cCCCCEEEEecccccC-ccch-HHHHHhcCceEEEEecCCCcccCccCHHHHHHH
Confidence 63 2455555677999999998 899999664 444543 2100 011222344 3444443423677999999999
Q ss_pred HhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC---CCCCCCCCCCCCCcEEEeccCcc
Q 037063 272 IVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS---KDMDTLGLSLFKPDFLICSFYKI 347 (588)
Q Consensus 272 i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~---~d~~~l~l~~~~~D~vv~S~~K~ 347 (588)
++. .++++|+++.++|+ ...|+++| ++|+++|+++|+|+++..+ .+.....+. .+|+++.|+||+
T Consensus 159 l~~-------~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~ 227 (407)
T 2dkj_A 159 ALE-------HRPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP--YAHVVTSTTHKT 227 (407)
T ss_dssp HHH-------HCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT--TCSEEEEESSGG
T ss_pred Hhh-------cCCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc--cccEEEEecccc
Confidence 972 26889999777774 88999999 9999999999999997653 111111111 279999999996
Q ss_pred CCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHh
Q 037063 348 FGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADAL 426 (588)
Q Consensus 348 ~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~ 426 (588)
++. +.| |+++++ +++++.+.+.... + ..++++.... +++.++++.+...
T Consensus 228 l~g-~~~-G~~~~~~~~~~~~l~~~~~~------------------------~-~~~~~~~~~~---~a~~~al~~~~~~ 277 (407)
T 2dkj_A 228 LRG-PRG-GLILSNDPELGKRIDKLIFP------------------------G-IQGGPLEHVI---AGKAVAFFEALQP 277 (407)
T ss_dssp GCC-CSC-EEEEESCHHHHHHHHHHHTT------------------------T-TCSSCCHHHH---HHHHHHHHHHHSH
T ss_pred CCC-CCc-eEEEECCHHHHHHHHhhhcc------------------------c-ccCCCcHHHH---HHHHHHHHHHHHh
Confidence 652 666 999999 5776665432211 0 1233443332 4566788876544
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEecc
Q 037063 427 GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSC 506 (588)
Q Consensus 427 G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~ 506 (588)
+++++.++.+.+++++.+.|.++ +++++.+. ..+.++.+.+.+. + ++...+.+.|.++||.++.
T Consensus 278 ~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~---~~~~~~~~~~~~~-~--~~~~~~~~~l~~~gi~v~~ 341 (407)
T 2dkj_A 278 EFKEYSRLVVENAKRLAEELARR----------GYRIVTGG---TDNHLFLVDLRPK-G--LTGKEAEERLDAVGITVNK 341 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----------TCEEGGGS---CSSSEEEEECGGG-T--CCHHHHHHHHHHTTEECEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC----------CceeecCC---CCceEEEEECccc-C--CCHHHHHHHHHHcCceecC
Confidence 67899999999999999999984 35666531 3577888877641 1 4577788888899999988
Q ss_pred ccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC----CCHHHHHHHHHHHHHhhhh
Q 037063 507 GFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL----TNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 507 G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~----~t~eDv~~li~~l~~~l~~ 568 (588)
|...... . . ......+|+|++.+ .+.+|++++++.|++++++
T Consensus 342 ~~~~~~~--~-----------~-------~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 342 NAIPFDP--K-----------P-------PRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp CCCTTCS--S-----------C-------TTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred CcCcccc--c-----------c-------ccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 7421000 0 0 01112899999764 7999999999999999877
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-23 Score=221.82 Aligned_cols=314 Identities=14% Similarity=0.110 Sum_probs=207.0
Q ss_pred HHHHHHHHHHh----CCC-CCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 182 SKIRKRIMDFM----NIS-EDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 182 ~~~r~~ia~~l----ga~-~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.++|+.|++++ |.+ .+...|++|+|+|+|+.+++.++ .++||+|++. ..|++ . ...++..|++++.++
T Consensus 88 ~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~-~----~~~~~~~g~~~~~v~ 161 (425)
T 1vp4_A 88 PVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLF-LDDESYCVLDDPAYLG-A----INAFRQYLANFVVVP 161 (425)
T ss_dssp HHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCHH-H----HHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHh-CCCCCEEEEeCCCcHH-H----HHHHHHcCCEEEEec
Confidence 36777777777 943 22235999999999999999998 7899997654 44443 2 345567899999999
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCCcceEE-EEeCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCCCcCCC----C
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLF-VFPLQSKVTGARYSYM---WM-SVAAEKGWHVLLDATALGSK----D 326 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv-~~~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa~~~~~----d 326 (588)
.+ +++ +|+++|+++|+.........++++| ++++++|+||..+|.+ +| ++|+++|+++|+|+++.... .
T Consensus 162 ~~-~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~ 239 (425)
T 1vp4_A 162 LE-DDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGET 239 (425)
T ss_dssp EE-TTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCC
T ss_pred cC-CCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCC
Confidence 87 444 8999999999720000001268887 6899999999999965 46 88999999999999976521 0
Q ss_pred CCCC-CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 327 MDTL-GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 327 ~~~l-~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
..++ .+...+.++++.|++|++| +..++|++++++++++.+...... + .. +.
T Consensus 240 ~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~~------------------------~-~~-~~ 292 (425)
T 1vp4_A 240 VDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQS------------------------A-DL-CS 292 (425)
T ss_dssp CCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEECCHHHHHHHHHHHHH------------------------H-HS-SC
T ss_pred CcCHHHhCCCCCEEEEeccccccc-cccceEEEeeCHHHHHHHHHHhhh------------------------h-cC-CC
Confidence 0111 1112236789999999998 334589999998877665432111 0 01 11
Q ss_pred CccchhhHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecC
Q 037063 406 SISGVSSKLVECKGLDHA--DALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDW 483 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l--~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~ 483 (588)
+.... +++..+|+.. .. .++++.++.+..++++.+.|.++. + +.++++++.| ..+.++.+.+.+
T Consensus 293 ~~~~~---~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~-~----~~~g~~~~~~----~~g~~~~~~~~~- 358 (425)
T 1vp4_A 293 PAITH---RLAARYLERYDLLE-QLKPTIELYRRKRTVMLNALEEYF-S----DIPGVKWVKS----EGGLFIWLTLPE- 358 (425)
T ss_dssp CHHHH---HHHHHHHHHSCHHH-HTHHHHHHHHHHHHHHHHHHHHHS-T----TSTTCEECCC----SBSSEEEEECCT-
T ss_pred CHHHH---HHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHhC-C----CCCceEEecC----CccEEEEEEcCC-
Confidence 22211 3334455432 12 246777888888899999998740 0 0114676654 235567777653
Q ss_pred CCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 484 NGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 484 ~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
+ ++...+.+.|.++||.+++|..|... ..+.++||+|++.. +.+|++++++.|+
T Consensus 359 -~--~~~~~l~~~l~~~gi~v~~g~~f~~~----------------------~~~~~~iRis~~~~-~~e~i~~~l~~l~ 412 (425)
T 1vp4_A 359 -G--FDTWEMFEYAKRKKVFYVPGRVFKVY----------------------DEPSPSMRLSFCLP-PDEKIVEGIKRLR 412 (425)
T ss_dssp -T--CCTTTTHHHHHHHTEECEEGGGGCTT----------------------CCCCSEEEEECSSS-CHHHHHHHHHHHH
T ss_pred -C--CCHHHHHHHHHHCCCEEECchhhcCC----------------------CCCCCeEEEEeCCC-CHHHHHHHHHHHH
Confidence 1 23444555555559999988655210 01223899999975 8999999999999
Q ss_pred Hhhhhhh
Q 037063 564 RFLDADF 570 (588)
Q Consensus 564 ~~l~~~~ 570 (588)
+++++..
T Consensus 413 ~~l~~~~ 419 (425)
T 1vp4_A 413 EVVLEYG 419 (425)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887643
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=216.22 Aligned_cols=311 Identities=10% Similarity=0.013 Sum_probs=206.1
Q ss_pred cCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEE
Q 037063 173 YGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARV 251 (588)
Q Consensus 173 ~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v 251 (588)
|+.......+++|++|++++|++ .+++++|+|+|+.+++.++ +++||+|+ ....|++ ....+...++..|+++
T Consensus 60 y~r~~~~~~~~l~~~la~~~g~~----~~~~~~sGt~A~~~al~~~-~~~gd~Vi~~~~~y~~-~~~~~~~~~~~~g~~~ 133 (392)
T 3qhx_A 60 YARTGNPTRTALEAALAAVEDAA----FGRAFSSGMAAADCALRAM-LRPGDHVVIPDDAYGG-TFRLIDKVFTGWNVEY 133 (392)
T ss_dssp BTTTCCHHHHHHHHHHHHHTTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTCCHH-HHHHHHHTGGGGTCEE
T ss_pred ccCCCChHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEeCCCcch-HHHHHHHHHHhcCcEE
Confidence 34334677889999999999985 3899999999999999988 89999966 4556664 3434345557789999
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCC
Q 037063 252 SSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTL 330 (588)
Q Consensus 252 ~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l 330 (588)
+.++.+ |+++|+++|+ +++++|++++++|++|.+.|+++| ++|+++|+++|+|+++..+....++
T Consensus 134 ~~v~~~------d~~~l~~~i~--------~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~~~~ 199 (392)
T 3qhx_A 134 TPVALA------DLDAVRAAIR--------PTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQPL 199 (392)
T ss_dssp EEECTT------CHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGG
T ss_pred EEeCCC------CHHHHHHhhC--------CCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccccCChH
Confidence 999874 7899999998 789999999999999999999999 9999999999999998776433333
Q ss_pred CCCCCCCcEEEeccCccCCCCCCc---eEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 331 GLSLFKPDFLICSFYKIFGENPSG---FGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~~G~~P~G---~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
+ ..+|+++.|+||++| +.| .|+++.++ ++.+.+...... ...+.+
T Consensus 200 ~---~~~di~~~S~sK~lg--~~g~~~~G~v~~~~~~~~~~l~~~~~~--------------------------~g~~~~ 248 (392)
T 3qhx_A 200 S---LGADVVLHSTTKYIG--GHSDVVGGALVTNDEELDQSFAFLQNG--------------------------AGAVPG 248 (392)
T ss_dssp G---GTCSEEEEETTTTTT--CSSCCCCEEEEESCHHHHHHHHHHHHH--------------------------HCCCCC
T ss_pred H---hCCcEEEEcCccccC--CCCCceEEEEEECcHHHHHHHHHHHHh--------------------------cCCCCC
Confidence 2 348999999999998 444 78888885 555544321110 000111
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCC------------CCcc
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVM------------FDRG 473 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~------------~~rg 473 (588)
... ...++..++. ++...++..+.++++.+.|.+. +.+ .++.|... ...|
T Consensus 249 ~~~------~~~~~~~l~~--l~~~~~~~~~~~~~l~~~L~~~---------~~v~~v~~p~l~~~~~~~~~~~~~~g~g 311 (392)
T 3qhx_A 249 PFD------AYLTMRGLKT--LVLRMQRHSENAAAVAEFLAEH---------PAISTVLYPGLPSHPGHAVAARQMRGFG 311 (392)
T ss_dssp HHH------HHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHTC---------TTEEEEECTTSTTSTTHHHHHHHCSSCC
T ss_pred HHH------HHHHHhhhhH--HHHHHHHHHHHHHHHHHHHhcC---------CCcceEECCCCCCCCCHHHHHHhCCCCc
Confidence 111 1122223322 2444555666677777777763 334 45444321 1237
Q ss_pred cEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCC--ccEEEEecCCCCC
Q 037063 474 PSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSG--VSVVTAALGCLTN 551 (588)
Q Consensus 474 ~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g--~~~vRvSlg~~~t 551 (588)
++++|.+.+. ......+...++..+|.++.|..|+......... ...+.. . ..| .+.||+|+|..++
T Consensus 312 ~~~~~~l~~~---~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~--~~~~~~-----~-~~g~~~~~iRlSvg~e~~ 380 (392)
T 3qhx_A 312 GMVSVRMRAG---RTAAEQLCAKTNIFILAESLGSVESLIEHPSAMT--HASTAG-----S-QLEVPDDLVRLSVGIEDV 380 (392)
T ss_dssp SEEEEEETTC---HHHHHHHHHHCSSSEECSCCCCSSCEEECGGGTS--CGGGBT-----T-BCCCCTTEEEEECCSSCH
T ss_pred eEEEEEeCCc---HHHHHHHHHhCCCceECCCCCCCCceeeCccccc--ccccCH-----H-HcCCCCCeEEEEeccCCH
Confidence 8999998651 1123344445555678888887754211000000 000000 0 122 2389999999988
Q ss_pred HHHHHHHHHHH
Q 037063 552 FEDTYRLWAFV 562 (588)
Q Consensus 552 ~eDv~~li~~l 562 (588)
.++|+.|.++|
T Consensus 381 ~~~i~~l~~al 391 (392)
T 3qhx_A 381 ADLLDDLKQAL 391 (392)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888775
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.3e-23 Score=217.54 Aligned_cols=298 Identities=13% Similarity=0.037 Sum_probs=203.9
Q ss_pred HHHHHHHHHHh----CCCCCC-ceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 182 SKIRKRIMDFM----NISEDD-YTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 182 ~~~r~~ia~~l----ga~~~e-~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
.++|+.|++++ |++.+. ..|++|+|+|+|+.+++.++ .++||+|++ ...|++ . ...++..|++++.++
T Consensus 88 ~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~-~----~~~~~~~g~~~~~v~ 161 (404)
T 2o1b_A 88 EAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCV-INPGDYVLLPDPGYTD-Y----LAGVLLADGKPVPLN 161 (404)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCSS-H----HHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHh-cCCCCEEEEcCCCchh-H----HHHHHHCCCEEEEec
Confidence 35666666666 875221 35999999999999999998 889999664 455554 2 234567899999999
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCH---HHH-HHHHHcCcEEEEeCCCcCCC-C---C
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSY---MWM-SVAAEKGWHVLLDATALGSK-D---M 327 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl---~~I-~~a~~~g~~vvvDaa~~~~~-d---~ 327 (588)
.+..+..+|+++|+++++ +++++|++++++|+||..+|. ++| ++|+++|+++|+|+++.... + .
T Consensus 162 ~~~~~~~~d~~~l~~~l~--------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~ 233 (404)
T 2o1b_A 162 LEPPHYLPDWSKVDSQII--------DKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNP 233 (404)
T ss_dssp CCTTTCCCCGGGSCHHHH--------HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCC
T ss_pred cCcccCcCCHHHHHHhhc--------cCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC
Confidence 874234588999999987 578999999999999999985 456 88999999999999976531 0 0
Q ss_pred CCCCCC-CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 328 DTLGLS-LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 328 ~~l~l~-~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
.-+.+. ....|+++.|++|++|.+..++|++++++++++.+...... ..++.+
T Consensus 234 ~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~--------------------------~~~~~~ 287 (404)
T 2o1b_A 234 SILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKYQTH--------------------------TNAGMF 287 (404)
T ss_dssp CGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHHH--------------------------HCCCCC
T ss_pred ChhhcCCCCCCEEEEEecchhccCchhheEeEecCHHHHHHHHHHHhh--------------------------ccCCCC
Confidence 111111 11357999999999983223479999988887766432211 011222
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc-EEEEEeecCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP-SLAFNVFDWNG 485 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~-iv~f~~~~~~g 485 (588)
.... +++..+|+.... .++++.++.+.+++++.+.|.++ +++++.+ .++ ++.+.+.+ +
T Consensus 288 ~~~~---~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~-----~~g~~~~~~~~~--~ 346 (404)
T 2o1b_A 288 GALQ---DAAIYALNHYDD-FLEEQSNVFKTRRDRFEAMLAKA----------DLPFVHA-----KGGIYVWLETPP--G 346 (404)
T ss_dssp HHHH---HHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHT----------TCCEECC-----CBSSEEEEECCT--T
T ss_pred HHHH---HHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHhc----------CCeecCC-----CcceEEEEeCCC--C
Confidence 2221 333445544222 26778888889999999999884 2444443 234 45556642 1
Q ss_pred CCcCHHHHHH-HHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 486 TRIDPALVQK-LADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 486 ~~i~~~~v~~-~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
++...+.+ +++++||.+++|..|.. .+..+||+|++. +.++++++++.|++
T Consensus 347 --~~~~~l~~~l~~~~gi~v~~g~~f~~------------------------~~~~~iRis~~~--~~e~l~~~l~~l~~ 398 (404)
T 2o1b_A 347 --YDSEQFEQFLVQEKSILVAPGKPFGE------------------------NGNRYVRISLAL--DDQKLDEAAIRLTE 398 (404)
T ss_dssp --CCHHHHHHHHHHHHCEECEESGGGCG------------------------GGTTEEEEECCS--CTTHHHHHHHHHHG
T ss_pred --CCHHHHHHHHHHHCCEEEeCchhhCc------------------------CCCCeEEEEEcC--CHHHHHHHHHHHHH
Confidence 44556554 45578999998865521 112289999986 78899999999999
Q ss_pred hhhh
Q 037063 565 FLDA 568 (588)
Q Consensus 565 ~l~~ 568 (588)
++++
T Consensus 399 ~l~~ 402 (404)
T 2o1b_A 399 LAYL 402 (404)
T ss_dssp GGGG
T ss_pred HHHh
Confidence 8765
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-21 Score=209.45 Aligned_cols=311 Identities=16% Similarity=0.074 Sum_probs=201.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+++|+.|++++|.+ ++++++|+++|+.+++.++ +++||+|++ ...|++ ....+...++..|++++.++.
T Consensus 61 ~~~~~~l~~~ia~~~g~~----~~i~~~~g~~ai~~~~~~l-~~~gd~Vl~~~~~y~~-~~~~~~~~~~~~g~~~~~v~~ 134 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTE----ACVATSSGMGAIAATVLTI-LKAGDHLISDECLYGC-THALFEHALTKFGIQVDFINT 134 (404)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESCCCHH-HHHHHHTHHHHTTCEEEEECT
T ss_pred ChHHHHHHHHHHHHhCCC----cEEEeCChHHHHHHHHHHH-hCCCCEEEEeCCCchh-HHHHHHHHHHHcCCEEEEECC
Confidence 456789999999999984 3777777789999999998 899999664 455554 333223356778999999987
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH-cCcEEEEeCCCcCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE-KGWHVLLDATALGSKDMDTLGLSL 334 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~-~g~~vvvDaa~~~~~d~~~l~l~~ 334 (588)
+ |.++|+++|+ +++++|++++++|+||.++|+++| ++|++ +|+++++|+++..+....++.
T Consensus 135 ~------d~~~l~~~i~--------~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~~--- 197 (404)
T 1e5e_A 135 A------IPGEVKKHMK--------PNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVD--- 197 (404)
T ss_dssp T------STTHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGG---
T ss_pred C------CHHHHHHhcC--------CCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCccc---
Confidence 4 6788999887 689999999999999999999999 99999 999999999988763112322
Q ss_pred CCCcEEEeccCccCCCCCCc--eEEEEEeCcchh-cccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchh
Q 037063 335 FKPDFLICSFYKIFGENPSG--FGCLFVKKSSAS-VLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVS 411 (588)
Q Consensus 335 ~~~D~vv~S~~K~~G~~P~G--~G~L~v~~~~~~-~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~ 411 (588)
+++|+++.|++|+||. |.+ .|+++++++.++ .+.+...+. ..++.+....
T Consensus 198 ~~~di~~~S~sK~~~~-~g~ri~G~~~~~~~~~~~~l~~~~~~~-------------------------~g~~~~~~~~- 250 (404)
T 1e5e_A 198 FGVDVVVHSATKYING-HTDVVAGLICGKADLLQQIRMVGIKDI-------------------------TGSVISPHDA- 250 (404)
T ss_dssp GTCSEEEEETTTTTTC-SSCCCCEEEEECHHHHHHHHHTCCCCC-------------------------CCCCCCHHHH-
T ss_pred cCCEEEEEcCccccCC-CCCCeEEEEEECHHHHHHHHHHHHHhC-------------------------CCCCCCHHHH-
Confidence 3489999999998884 544 599999998877 665543220 0011111111
Q ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHccc------CCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCC
Q 037063 412 SKLVECKGLDHADALGLILISNRARYLINWLANALMNLH------HPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNG 485 (588)
Q Consensus 412 ~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~------h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g 485 (588)
.+...+++.+ +...++....++.+.+.|++.. ++.-+ ..|+++++.+.. ...+++++|.+.+
T Consensus 251 --~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~-~~p~~~~~~~~~-~~~g~~~~~~~~~--- 318 (404)
T 1e5e_A 251 --WLITRGLSTL-----NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFE-DHEGHDIAKKQM-RMYGSMITFILKS--- 318 (404)
T ss_dssp --HHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCS-SSTTHHHHHHHC-SSCCSEEEEEETT---
T ss_pred --HHHHHhHhHH-----HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCC-CCccHHHHHhhC-CCCceEEEEEeCC---
Confidence 2223444432 3333444455555555665531 00000 011222222111 1248899997754
Q ss_pred CCcCHHHHHHHHHhCCcEecc---c------cccCcccccchHHHHHHHHhhhcCCCCCcCC--ccEEEEecCCCCCHHH
Q 037063 486 TRIDPALVQKLADRHNISLSC---G------FLQNIFFSGEYEQERVRVLETRSGTNETRSG--VSVVTAALGCLTNFED 554 (588)
Q Consensus 486 ~~i~~~~v~~~l~~~gI~v~~---G------~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g--~~~vRvSlg~~~t~eD 554 (588)
. .+.+.+++++.||.++. | ++|......... ...... .| .+.||+|++. ||
T Consensus 319 --~-~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~---~~~~~~--------~g~~~~~iRis~g~----e~ 380 (404)
T 1e5e_A 319 --G-FEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVP---KEEREA--------AGITDGMIRLSVGI----ED 380 (404)
T ss_dssp --H-HHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSC---HHHHHH--------TTCCTTEEEEECCS----SC
T ss_pred --C-HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCC---HHHHHh--------cCCCCCeEEEEeCC----CC
Confidence 1 35678889999995443 2 334321100000 001111 23 2499999997 88
Q ss_pred HHHHHHHHHHhhhh
Q 037063 555 TYRLWAFVSRFLDA 568 (588)
Q Consensus 555 v~~li~~l~~~l~~ 568 (588)
++++++.|++.++.
T Consensus 381 ~~~li~~l~~al~~ 394 (404)
T 1e5e_A 381 ADELIADFKQGLDA 394 (404)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887764
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-22 Score=214.58 Aligned_cols=307 Identities=14% Similarity=0.148 Sum_probs=208.1
Q ss_pred HHHHHHHHHHh----CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 182 SKIRKRIMDFM----NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 182 ~~~r~~ia~~l----ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++|+.|++++ |++ +...|++|+|+|+|+.+++.++ +++||+|++. ..|++ . ...++..|++++.++.
T Consensus 121 ~~lr~~ia~~~~~~~g~~-~~~~v~~t~G~~~al~~~~~~l-~~~Gd~Vlv~~p~y~~-~----~~~~~~~g~~~~~v~~ 193 (448)
T 3aow_A 121 TPLRETLMKWLGKRYGIS-QDNDIMITSGSQQALDLIGRVF-LNPGDIVVVEAPTYLA-A----LQAFNFYEPQYIQIPL 193 (448)
T ss_dssp HHHHHHHHHHHHHHHCCC-TTSEEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCHH-H----HHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCcC-ChhhEEEeCcHHHHHHHHHHHH-cCCCCEEEEeCCChHH-H----HHHHHHcCCEEEEecc
Confidence 36777777777 984 3345999999999999999999 8999997654 44443 2 3455678999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEE-EEeCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCCCcCCC-C---C
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLF-VFPLQSKVTGARYSYM---WM-SVAAEKGWHVLLDATALGSK-D---M 327 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv-~~~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa~~~~~-d---~ 327 (588)
+ +++ +++++|+++|+.. .....++++| ++++++|+||..+|.+ +| ++|+++|+++|+|+++.... + .
T Consensus 194 ~-~~g-~d~~~L~~~l~~~--~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~ 269 (448)
T 3aow_A 194 D-DEG-MKVEILEEKLKEL--KSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPE 269 (448)
T ss_dssp E-TTE-ECHHHHHHHHHHH--HHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCC
T ss_pred C-CCC-CCHHHHHHHHhhh--hccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCC
Confidence 7 444 8999999998610 0011368887 6799999999999975 56 88999999999999965421 0 1
Q ss_pred CCC-CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 328 DTL-GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 328 ~~l-~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
.++ .++....++++.|++|.+| +...+|++++++++++.+...... + ..+++.
T Consensus 270 ~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~~~~~l~~~l~~~~~~------------------------~-~~~~~~ 323 (448)
T 3aow_A 270 KKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVGDPGIIRKMEIAKQS------------------------T-DLCTNV 323 (448)
T ss_dssp CCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEEECHHHHHHHHHHHHH------------------------H-HSSCCH
T ss_pred cCHHhcCCCCCEEEEccchhhcc-ccccEEEEEeCHHHHHHHHHHHHH------------------------h-cCCCCH
Confidence 111 2222346789999999998 333489999998887766432211 0 011111
Q ss_pred ccchhhHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC-eEEEeCCCCCCCcccEEEEEeecC
Q 037063 407 ISGVSSKLVECKGLDHA--DALGLILISNRARYLINWLANALMNLHHPHSETGIP-LVRIYGPKVMFDRGPSLAFNVFDW 483 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l--~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~-~v~i~~p~~~~~rg~iv~f~~~~~ 483 (588)
+.+ +++..+|+.. .. .++++.++.+..++++.+.|.+. .| +++++.| ..+.++.+.+.+
T Consensus 324 ~~q----~a~~~~L~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~--------~~~g~~~~~p----~~g~~~~v~~~~- 385 (448)
T 3aow_A 324 FGQ----VVAWRYVDGGYLEK-HIPEIRKFYKPRRDAMLEALEEF--------MPEGVKWTKP----EGGMFIWVTLPD- 385 (448)
T ss_dssp HHH----HHHHHHHHTTHHHH-HHHHHHHHHHHHHHHHHHHHHHH--------CCTTCEECCC----SBSSEEEEECST-
T ss_pred HHH----HHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHh--------CCCCeEEeCC----CccEEEEEEcCC-
Confidence 111 2333444321 11 15667777788889999999873 24 4666554 234566666653
Q ss_pred CCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 484 NGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 484 ~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
+ ++...+.+.|.++||.+++|..|.+. ..+.++||+|++.. +.|||+++++.|.
T Consensus 386 -~--~~~~~l~~~l~~~gV~v~pg~~f~~~----------------------~~~~~~iRls~~~~-~~e~i~~~~~~L~ 439 (448)
T 3aow_A 386 -G--IDSKKMLERAIKKGVAYVPGEAFYAH----------------------RDVKNTMRLNFTYV-DEDKIMEGIKRLA 439 (448)
T ss_dssp -T--CCHHHHHHHHHHTTEECEEGGGGSTT----------------------CCCCSEEEEECSSS-CTHHHHHHHHHHH
T ss_pred -C--CCHHHHHHHHHHCCcEEEcchhhcCC----------------------CCCCCEEEEEeCCC-CHHHHHHHHHHHH
Confidence 1 45666766666679999988655310 01223899999874 8899999999999
Q ss_pred Hhhhhh
Q 037063 564 RFLDAD 569 (588)
Q Consensus 564 ~~l~~~ 569 (588)
+++++.
T Consensus 440 ~~l~~~ 445 (448)
T 3aow_A 440 ETIKEE 445 (448)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988654
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-22 Score=211.84 Aligned_cols=315 Identities=14% Similarity=0.091 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....++|+.+++++|++ .+++++|+|+|+.+++.++.+++||+|+ ....|++ . ...++..|++++.++++
T Consensus 63 ~~~~~l~~~la~~~~~~----~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~-~----~~~~~~~g~~~~~~~~~ 133 (399)
T 2oga_A 63 PELEGFEAEFAAYCETD----HAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIA-S----WLAVSATGATPVPVEPH 133 (399)
T ss_dssp HHHHHHHHHHHHHTTSS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTH-H----HHHHHHTTCEEEEECBC
T ss_pred hhHHHHHHHHHHHHCCC----eEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHH-H----HHHHHHCCCEEEEEecC
Confidence 45679999999999985 3889999999999999998778999966 4555654 2 23456789999999997
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC--CCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK--DMDTLGLSL 334 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~--d~~~l~l~~ 334 (588)
..++.+|+++|+++|+ +++++|+ ++|+||...|+++| ++|+++|+++|+|+++..+. +...++ .
T Consensus 134 ~~~~~~d~~~l~~~i~--------~~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~ 200 (399)
T 2oga_A 134 EDHPTLDPLLVEKAIT--------PRTRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIG--A 200 (399)
T ss_dssp SSSSSBCHHHHHHHCC--------TTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETT--C
T ss_pred CCCCCcCHHHHHHhcC--------CCCeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecc--c
Confidence 4467899999999997 5788877 36789999999999 99999999999999987652 222222 1
Q ss_pred CCCcEEEeccC--ccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC-Cccch
Q 037063 335 FKPDFLICSFY--KIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES-SISGV 410 (588)
Q Consensus 335 ~~~D~vv~S~~--K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~-~~~~~ 410 (588)
-+|++++|+| |++|. |...|+++.+ +++++.+.+....+ +... +.. . ..|.. .+..+
T Consensus 201 -~~di~~~S~~~sK~~~~-~G~~g~~~~~~~~~~~~l~~~~~~g-~~~~----------~~~----~--~~g~~~~~~~~ 261 (399)
T 2oga_A 201 -GSSVAAFSFYPGKNLGC-FGDGGAVVTGDPELAERLRMLRNYG-SRQK----------YSH----E--TKGTNSRLDEM 261 (399)
T ss_dssp -TTCEEEEECCTTSSSCC-SSCCEEEEESCHHHHHHHHHHHBTT-CSST----------TCC----C--SCCCBCCCCHH
T ss_pred -ccCEEEEeCCCCccCCc-CCceEEEEeCCHHHHHHHHHHHhcC-cccc----------ccc----c--ccccCCCcCHH
Confidence 1699999995 99983 2246777776 56666655432221 1100 000 0 11211 11121
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE-EEEEeecCCCCCcC
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS-LAFNVFDWNGTRID 489 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i-v~f~~~~~~g~~i~ 489 (588)
..+++..+++. ++.+.++.+.+++++.+.|.++ +++++..... ...++ +.|.+.. .+
T Consensus 262 -~~a~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~---------~g~~~~~~~~--~~~~~~~~~~~~~-----~~ 319 (399)
T 2oga_A 262 -QAAVLRIRLAH-----LDSWNGRRSALAAEYLSGLAGL---------PGIGLPVTAP--DTDPVWHLFTVRT-----ER 319 (399)
T ss_dssp -HHHHHHHHHHT-----HHHHHHHHHHHHHHHHHHTTTC---------TTCBCCCCCT--TEECCCSSEEEEC-----SS
T ss_pred -HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccC---------CCccccCCCC--CCcceeEEEEEEC-----CC
Confidence 11222334443 3556778888899999998874 4455433211 12222 2355443 24
Q ss_pred HHHHHHHHHhCCcEeccccc-cCcccccchH--------HHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHH
Q 037063 490 PALVQKLADRHNISLSCGFL-QNIFFSGEYE--------QERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 490 ~~~v~~~l~~~gI~v~~G~~-c~~~~~~~~~--------~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~ 560 (588)
...+.+.|.++||.++.++. +... ...+. -.....+. ...||++++.++|.|||+++++
T Consensus 320 ~~~l~~~L~~~gI~v~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~-----------~~~lRi~~~~~~t~edi~~~~~ 387 (399)
T 2oga_A 320 RDELRSHLDARGIDTLTHYPVPVHL-SPAYAGEAPPEGSLPRAESFA-----------RQVLSLPIGPHLERPQALRVID 387 (399)
T ss_dssp HHHHHHHHHHTTBCCBCSCSSCGGG-SHHHHTTSCCTTSCHHHHHHH-----------HHEEEECCSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCceecCCCCcccc-chhhcccCCCCCCChhHHHHH-----------hCEEEccCCCCCCHHHHHHHHH
Confidence 67788888889999987642 1000 00000 00000011 1289999999999999999999
Q ss_pred HHHHhhhh
Q 037063 561 FVSRFLDA 568 (588)
Q Consensus 561 ~l~~~l~~ 568 (588)
.|++++++
T Consensus 388 ~l~~~~~~ 395 (399)
T 2oga_A 388 AVREWAER 395 (399)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 99998754
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-21 Score=208.05 Aligned_cols=315 Identities=12% Similarity=0.032 Sum_probs=209.8
Q ss_pred hHHHHHHHHHHHHHhCCCCC-------CceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCE
Q 037063 178 SELESKIRKRIMDFMNISED-------DYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGAR 250 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~-------e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~ 250 (588)
.++.+.+.+.+++..|.+.+ ...|++|+|+++|+.+++.++ +++||+|++....+... ...++..|++
T Consensus 81 ~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~----~~~~~~~g~~ 155 (425)
T 2r2n_A 81 PELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI-INPGDNVLLDEPAYSGT----LQSLHPLGCN 155 (425)
T ss_dssp HHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCHHH----HHHHGGGTCE
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHh-CCCCCEEEEeCCCcHHH----HHHHHHcCCE
Confidence 35556666666666787652 146999999999999999999 89999977654443312 3456778999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhccc----cCCCcceEEEE-eCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCCC
Q 037063 251 VSSAEFAWPNLRIHSGKLMKKIVGKRKK----KKKKKRGLFVF-PLQSKVTGARYSYM---WM-SVAAEKGWHVLLDATA 321 (588)
Q Consensus 251 v~~v~~~~~~~~i~~e~l~~~i~~~~~~----~~~~~t~Lv~~-~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa~ 321 (588)
++.++.+ ++ .+++++|++++++.+.+ ...+++++|++ ++++|+||..+|.+ +| ++|+++|++||+|+++
T Consensus 156 ~~~v~~~-~~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~ 233 (425)
T 2r2n_A 156 IINVASD-ES-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPY 233 (425)
T ss_dssp EEEECEE-TT-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred EEEeCcC-CC-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 9999987 44 48999999998620000 01135778765 89999999999987 56 8899999999999996
Q ss_pred cC----CC---CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 322 LG----SK---DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 322 ~~----~~---d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
.. +. .+..+ .....++++.|++|.+| +..++|++++++++++.+......
T Consensus 234 ~~~~~~g~~~~~~~~~--~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~~-------------------- 290 (425)
T 2r2n_A 234 YFLQFNKFRVPTFLSM--DVDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQV-------------------- 290 (425)
T ss_dssp GGGBSSSSCCCCTGGG--CTTSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHHT--------------------
T ss_pred ccccCCCCCCCCcccc--CCCCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHHH--------------------
Confidence 52 21 12222 22335789999999888 345689999999887766432211
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCC
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHADA----LGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVM 469 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~----~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~ 469 (588)
..++.+.... .++..+|+.+.. --++++.++.+..++++.+.|.++ .+++ .+..|
T Consensus 291 ------~~~~~~~~~q---~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--------~~~~~~~~~p--- 350 (425)
T 2r2n_A 291 ------STLHPSTFNQ---LMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKW--------LTGLAEWHVP--- 350 (425)
T ss_dssp ------TTCSSCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CSSSEEECCC---
T ss_pred ------hcCCCCHHHH---HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCCeEEeCC---
Confidence 0112222221 333455544211 014666777788888888888873 2443 44444
Q ss_pred CCcccEEEEEeecCCCCCcCHHH-HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCC
Q 037063 470 FDRGPSLAFNVFDWNGTRIDPAL-VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGC 548 (588)
Q Consensus 470 ~~rg~iv~f~~~~~~g~~i~~~~-v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~ 548 (588)
..+.++.+.+.+. .+... +.+.|.++||.+++|..|.... ..+.++||+|++.
T Consensus 351 -~~g~~~~~~~~~~----~~~~~~~~~~l~~~gv~v~pg~~f~~~~---------------------~~~~~~iRis~~~ 404 (425)
T 2r2n_A 351 -AAGMFLWIKVKGI----NDVKELIEEKAVKMGVLMLPGNAFYVDS---------------------SAPSPYLRASFSS 404 (425)
T ss_dssp -SBSSEEEEEETTC----SCCHHHHHTHHHHTTEECEEGGGGSSST---------------------TSCCCEEEEECSS
T ss_pred -CceEEEEEEeCCC----CCHHHHHHHHHHHCCcEEechhhhcCCC---------------------CCCCCEEEEEeCC
Confidence 2345566666541 23334 5777888999999986653110 0122389999984
Q ss_pred CCCHHHHHHHHHHHHHhhhhh
Q 037063 549 LTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 549 ~~t~eDv~~li~~l~~~l~~~ 569 (588)
.+.+|++++++.|++++++.
T Consensus 405 -~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 405 -ASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp -CCHHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHh
Confidence 59999999999999988653
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-22 Score=214.16 Aligned_cols=311 Identities=9% Similarity=0.044 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHHhCCCCCC-ceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 179 ELESKIRKRIMDFMNISEDD-YTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e-~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++.+.+.+.+.+.+|.+.+. ..|+||+|+|+|+.+++.++ +++||+|++ ...|++ . ...++..|++++.+++
T Consensus 71 ~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~~~~-~----~~~~~~~g~~~~~~~~ 144 (422)
T 3fvs_A 71 PLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQAL-VDEGDEVIIIEPFFDC-Y----EPMTMMAGGRPVFVSL 144 (422)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT-H----HHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHH-cCCCCEEEEcCCCchh-h----HHHHHHcCCEEEEEec
Confidence 44445555555555544332 35999999999999999998 899999664 445553 2 3455678999999998
Q ss_pred cC-----------CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCC
Q 037063 257 AW-----------PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATA 321 (588)
Q Consensus 257 ~~-----------~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~ 321 (588)
+. .+..+|+++|+++++ +++++|++++++|+||..+| +++| ++|+++|+++|+|+++
T Consensus 145 ~~~~~~~G~~~~~~~~~~d~~~l~~~~~--------~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~ 216 (422)
T 3fvs_A 145 KPGPIQNGELGSSSNWQLDPMELAGKFT--------SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVY 216 (422)
T ss_dssp BCCCCCSSSCCBGGGSBCCHHHHHTTCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred ccccccccccccccCCCCCHHHHHhhcC--------CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccc
Confidence 73 134689999998887 68999999999999999996 6667 8899999999999997
Q ss_pred cC----CC---CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 322 LG----SK---DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 322 ~~----~~---d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
.. +. .+..++ .....++++.|++|.+|.+..++|++++++++++.+......
T Consensus 217 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~-------------------- 275 (422)
T 3fvs_A 217 QWMVYDGHQHISIASLP-GMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQN-------------------- 275 (422)
T ss_dssp TTCBCTTCCCCCGGGST-TTGGGEEEEEEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHT--------------------
T ss_pred hhhccCCCCCCChhhcc-cccCcEEEEecchhccCCccceEEEEEeCHHHHHHHHHHHhh--------------------
Confidence 64 21 111221 112356899999999884234589999988877665432211
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHH------HhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCC
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHAD------ALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKV 468 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~------~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~ 468 (588)
...+.+.... +++..+|+... ...++++.++.+.+++++.+.|.++ +++++.|.
T Consensus 276 ------~~~~~~~~~~---~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~- 335 (422)
T 3fvs_A 276 ------SVFHCPTQSQ---AAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV----------GLKPIIPQ- 335 (422)
T ss_dssp ------TTCCCCHHHH---HHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT----------TCEEEBCS-
T ss_pred ------ccCCCCcHHH---HHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc----------CCeecCCC-
Confidence 0011121111 34445554310 1126788899999999999999884 35655542
Q ss_pred CCCcccEEEEEeecCC-------C---CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCC
Q 037063 469 MFDRGPSLAFNVFDWN-------G---TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSG 538 (588)
Q Consensus 469 ~~~rg~iv~f~~~~~~-------g---~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g 538 (588)
.+.++.+.+.... + +....+.+.++++++||.+.+|..|.... .. ..+
T Consensus 336 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~------------~~-------~~~ 393 (422)
T 3fvs_A 336 ---GSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVP------------HQ-------KHF 393 (422)
T ss_dssp ---BSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHH------------HH-------TTS
T ss_pred ---eeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCc------------CC-------CCC
Confidence 3445555543210 0 00012445567788899999997774210 00 023
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 539 VSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 539 ~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.++||+|++. +.|||+++++.|++++++
T Consensus 394 ~~~iRis~~~--~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 394 DHYIRFCFVK--DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp CSEEEEECCC--CHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence 3499999886 999999999999988753
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-22 Score=210.18 Aligned_cols=320 Identities=13% Similarity=0.157 Sum_probs=211.2
Q ss_pred CCeeeecCCCCC------CCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGHG------LFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~g------l~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|+|.++.. ..++.+++++.+.+.. .+++. . .|. .....+
T Consensus 26 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~--~~~~~------------------------~--~y~---~~~~~~ 74 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEK--LLHVS------------------------N--LYE---NPWQEE 74 (375)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHH--CSCCC------------------------T--TBC---CHHHHH
T ss_pred CCCEEEEcCCcccccccCCCCHHHHHHHHHHHHh--ccccC------------------------c--ccC---CHHHHH
Confidence 567899988653 2678888887665532 11210 0 011 234568
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--C---CCC-CeEE-EcCCCchhHHHHHHHHHHh----cCCE--
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--F---YSN-PRLL-TVYDHENEAAALMIESSKK----RGAR-- 250 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--~---~~g-d~ll-~~~e~~s~~~~~~~~~a~~----~G~~-- 250 (588)
+|+.|++++|+ ++ .|++|+|+|+|+.+++.++. . ++| |+|+ ....|+.....+ ...... .|..
T Consensus 75 l~~~la~~~g~-~~--~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~ 150 (375)
T 2eh6_A 75 LAHKLVKHFWT-EG--KVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGS-LSATGQPKFHKGFEPL 150 (375)
T ss_dssp HHHHHHHTSSS-CE--EEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHH-HHHCBCGGGTTTTCSC
T ss_pred HHHHHHhhcCC-CC--eEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhh-hhhcCCccccCCCCCC
Confidence 99999999998 33 49999999999999886421 3 678 8865 455666533322 111100 1221
Q ss_pred ---EEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCc
Q 037063 251 ---VSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATAL 322 (588)
Q Consensus 251 ---v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~ 322 (588)
+..++. .|+++|+++++ +++++|++++++|+||.+.| +++| ++|+++|+++|+|+++.
T Consensus 151 ~~~~~~~~~------~d~~~l~~~l~--------~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~ 216 (375)
T 2eh6_A 151 VPGFSYAKL------NDIDSVYKLLD--------EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQT 216 (375)
T ss_dssp CSSEEEECT------TCHHHHHTTCC--------TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred CCCceeCCC------chHHHHHHHhc--------CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEecccc
Confidence 344332 47888888876 67999999999999999988 9999 99999999999999987
Q ss_pred -CCCCCCCCCCCCC--CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccccccc
Q 037063 323 -GSKDMDTLGLSLF--KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQ 399 (588)
Q Consensus 323 -~~~d~~~l~l~~~--~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f 399 (588)
++.....+.+..+ .+|++++| |.+|. +.|+|++++++++++.+.+...+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~-g~~~G~~~~~~~~~~~~~~~~~~~------------------------ 269 (375)
T 2eh6_A 217 GIGRTGEFYAYQHFNLKPDVIALA--KGLGG-GVPIGAILAREEVAQSFTPGSHGS------------------------ 269 (375)
T ss_dssp TTTTTSSSSGGGGGTCCCSEEEEC--GGGGT-TSCCEEEEEEHHHHTTCCTTSCCC------------------------
T ss_pred CCCCCCcchhhhhcCCCCCEEEEc--ccccC-CCCeEEEEEcHHHHhhhcCCCCCC------------------------
Confidence 4311111222222 28988555 97774 778999999998877666532210
Q ss_pred ccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEE
Q 037063 400 SKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFN 479 (588)
Q Consensus 400 ~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~ 479 (588)
..++.++.. ++..++|+.+. .+.++++++++++.+.|.++ +...+ + ..+.++.+.
T Consensus 270 -~~~~~~~~~----~~~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~-------~~~~~----~----~~g~~~~~~ 324 (375)
T 2eh6_A 270 -TFGGNPLAC----RAGTVVVDEVE-----KLLPHVREVGNYFKEKLKEL-------GKGKV----K----GRGLMLGLE 324 (375)
T ss_dssp -SSTTCHHHH----HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHT-------TSSEE----E----EETTEEEEE
T ss_pred -CCCCCHHHH----HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH-------hcCCc----e----EEEEEEEEE
Confidence 112222221 22334555433 67888889999999999885 11111 1 245777777
Q ss_pred eecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHH
Q 037063 480 VFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLW 559 (588)
Q Consensus 480 ~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li 559 (588)
+.+ +...+.+.|.++||.++.+. . ..||+|+++.++.||+++++
T Consensus 325 ~~~------~~~~~~~~l~~~gi~~~~~~----------------------------~--~~iRi~~~~~~~~~~i~~~~ 368 (375)
T 2eh6_A 325 LER------ECKDYVLKALEKGLLINCTA----------------------------G--KVLRFLPPLIIQKEHIDRAI 368 (375)
T ss_dssp CSS------CCHHHHHHHHHTTEECEEET----------------------------T--TEEEECCCTTCCHHHHHHHH
T ss_pred EcC------cHHHHHHHHHHCCCEEecCC----------------------------C--CEEEEECCCCCCHHHHHHHH
Confidence 653 24556666667999987541 1 18999999999999999999
Q ss_pred HHHHHhh
Q 037063 560 AFVSRFL 566 (588)
Q Consensus 560 ~~l~~~l 566 (588)
+.|+++|
T Consensus 369 ~~l~~~l 375 (375)
T 2eh6_A 369 SVLREIL 375 (375)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9998764
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-22 Score=206.40 Aligned_cols=286 Identities=11% Similarity=0.025 Sum_probs=195.3
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec-cCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF-AWPN 260 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~-~~~~ 260 (588)
.++|+.+++++|+++++ |++|+|+|+|+.+++.++ . ||+|++....+... ...++..|++++.+++ + +.
T Consensus 53 ~~lr~~la~~~~~~~~~--i~~t~g~~~al~~~~~~l-~--gd~Vi~~~p~~~~~----~~~~~~~g~~~~~v~~~~-~~ 122 (350)
T 3fkd_A 53 GTLRQMLAKRNSVDNNA--ILVTNGPTAAFYQIAQAF-R--GSRSLIAIPSFAEY----EDACRMYEHEVCFYPSNE-DI 122 (350)
T ss_dssp HHHHHHHHHHTTCCGGG--EEEESHHHHHHHHHHHHT-T--TCEEEEEESCCHHH----HHHHHHTTCEEEEEETTS-CG
T ss_pred HHHHHHHHHHhCcCHHH--EEEcCCHHHHHHHHHHHH-C--CCEEEEeCCCcHHH----HHHHHHcCCeEEEEecCC-cc
Confidence 47999999999997665 999999999999999998 3 89976544333212 3556778999999998 5 32
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcC-cEEEEeCCCcCC-CC--CCCCCCCCC
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKG-WHVLLDATALGS-KD--MDTLGLSLF 335 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g-~~vvvDaa~~~~-~d--~~~l~l~~~ 335 (588)
..+++ +++++|++++++|+||.++|+++| ++++..+ .++|+|+++... .+ .....+...
T Consensus 123 ~~~~~----------------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~ 186 (350)
T 3fkd_A 123 GEADF----------------SNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGR 186 (350)
T ss_dssp GGSCC----------------TTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTC
T ss_pred ccCcc----------------CCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcC
Confidence 22322 368899999999999999999999 8888875 799999996532 11 111122233
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHH
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLV 415 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~a 415 (588)
..++++.|++|.+|.++.++|++++++++++.+...... .+.+.... ++
T Consensus 187 ~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~---~~ 235 (350)
T 3fkd_A 187 KNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFSTP----------------------------WAVNALAI---EA 235 (350)
T ss_dssp SSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCCT----------------------------TCSCHHHH---HH
T ss_pred CCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCCC----------------------------CCCCHHHH---HH
Confidence 466899999998884345689999988877766543311 01121111 22
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHH
Q 037063 416 ECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQK 495 (588)
Q Consensus 416 l~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~ 495 (588)
+..+|+....+ .+.+.++. .+++++.+.|.++ |+++++. ..+.++.+.+... +...+.+
T Consensus 236 ~~~~l~~~~~~-~~~~~~~~-~~~~~l~~~L~~~---------~~~~~~~-----~~~~~~~~~~~~~-----~~~~l~~ 294 (350)
T 3fkd_A 236 AKFILIHPAQF-TLPIRKWQ-RNTVDFITALNRL---------DGVEVHP-----SGTTFFLLRLKKG-----TAAELKK 294 (350)
T ss_dssp HHHHHHCTTTT-CCCHHHHH-HHHHHHHHHHHHS---------TTEEECC-----CSSSEEEEEESSS-----CHHHHHH
T ss_pred HHHHHhCHHHH-HHHHHHHH-HHHHHHHHHHhcC---------CCcEECC-----CCCcEEEEECCCC-----CHHHHHH
Confidence 33334322111 23344444 7888888888874 5677753 2456776777642 4667766
Q ss_pred HHHh-CCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhhhcc
Q 037063 496 LADR-HNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDADFVE 572 (588)
Q Consensus 496 ~l~~-~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~~~~ 572 (588)
.|.+ +||.+++|..|.. .+.++||+|++ +.+|+++++++|++++++.-..
T Consensus 295 ~L~~~~gi~v~~g~~f~~------------------------~~~~~iRis~~---~~~~~~~l~~al~~~~~~~~~~ 345 (350)
T 3fkd_A 295 YMLEEYNMLIRDASNFRG------------------------LDESYVRITTQ---RPAQNQLFIKALETFLEKYEGH 345 (350)
T ss_dssp HHHHTTCEECEECTTSTT------------------------CCTTEEEEECC---CHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHCCEEEEeCccCCC------------------------CCCCEEEEEcC---CHHHHHHHHHHHHHHHHHhccc
Confidence 6666 9999999876621 22239999987 8899999999999988765433
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-21 Score=207.34 Aligned_cols=326 Identities=16% Similarity=0.087 Sum_probs=202.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEE-e
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSA-E 255 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v-~ 255 (588)
....+++|+++++++|++ + .++++++|+|+.+++.++ +++||+|+ ....|++....+ ..+++..|++++.+ +
T Consensus 57 ~~~~~~l~~~la~~~g~~---~-~v~~~sGt~A~~~~l~~~-~~~gd~vi~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~ 130 (421)
T 2ctz_A 57 NPTVDVLEKRLAALEGGK---A-ALATASGHAAQFLALTTL-AQAGDNIVSTPNLYGGTFNQF-KVTLKRLGIEVRFTSR 130 (421)
T ss_dssp CHHHHHHHHHHHHHHTCS---E-EEEESSHHHHHHHHHHHH-CCTTCEEEECSCCCHHHHHHH-HTHHHHTTCEEEECCT
T ss_pred ChHHHHHHHHHHHHhCCC---c-eEEecCHHHHHHHHHHHH-hCCCCEEEEeCCCchHHHHHH-HHHHHHcCCEEEEECC
Confidence 467789999999999985 2 345555699999999998 89999966 566777643333 44457789999998 6
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCC-cCCCCCCCCCCC
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATA-LGSKDMDTLGLS 333 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~-~~~~d~~~l~l~ 333 (588)
.+ ++++|+++|+ +++++|++++++|++|.+.|+++| ++|+++|+++|+|+++ ..+.....++
T Consensus 131 ~~------d~~~l~~~i~--------~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~~-- 194 (421)
T 2ctz_A 131 EE------RPEEFLALTD--------EKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLA-- 194 (421)
T ss_dssp TC------CHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGG--
T ss_pred CC------CHHHHHHhhc--------cCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccCCccc--
Confidence 53 7899999997 689999999999999999999999 9999999999999999 7774333332
Q ss_pred CCCCcEEEeccCccCCCCCC-ceEEEEEeC---cc----hhcccCCCCCCCceEeeecCCCcccccccccccccc---cC
Q 037063 334 LFKPDFLICSFYKIFGENPS-GFGCLFVKK---SS----ASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS---KF 402 (588)
Q Consensus 334 ~~~~D~vv~S~~K~~G~~P~-G~G~L~v~~---~~----~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~---e~ 402 (588)
..+|++++|+||++|. |. ++|++++.+ ++ ++.+.+...++.|....... ....+.. . .+|+ ..
T Consensus 195 -~~~Di~~~s~~K~l~~-~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~-~~~~~~~--~-~r~~~~~~~ 268 (421)
T 2ctz_A 195 -WGAALVTHSLTKWVGG-HGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAF-GELAFIV--K-ARVDGLRDQ 268 (421)
T ss_dssp -GTCSEEEEETTTTTTC-SSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHH-GGGHHHH--H-HHHTHHHHH
T ss_pred -cCCeEEEECCcccccC-CCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhc-chhHHHH--H-HHHHHHHhc
Confidence 3489999999998884 43 378888863 22 33455543332121100000 0000000 0 0221 11
Q ss_pred C-CCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeC-CCCC-----------
Q 037063 403 P-ESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYG-PKVM----------- 469 (588)
Q Consensus 403 G-T~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~-p~~~----------- 469 (588)
| ..+.... +....+++. +....++..++++++.+.|.++ |+++++. |...
T Consensus 269 g~~~~~~~a---~~~~~~l~~-----l~~r~~~~~~~a~~l~~~L~~~---------p~v~~v~~p~~~~~~~~~~~~~~ 331 (421)
T 2ctz_A 269 GQALGPFEA---WVVLLGMET-----LSLRAERHVENTLHLAHWLLEQ---------PQVAWVNYPGLPHHPHHDRAQKY 331 (421)
T ss_dssp CCCCCHHHH---HHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTC---------TTEEEEECTTSTTCTTHHHHHHH
T ss_pred CCCCCHHHH---HHHHcCcch-----HHHHHHHHHHhHHHHHHHHHhC---------CCeeEEECCCCCCCCCHHHHHHh
Confidence 2 1111110 111223332 2334455557899999999873 6777653 4311
Q ss_pred --CCcccEEEEEeecCCCCCcCHHHHHHHHHhCC---cEeccccccCcccc---cchHHHHHHHHhhhcCCCCCcCCc--
Q 037063 470 --FDRGPSLAFNVFDWNGTRIDPALVQKLADRHN---ISLSCGFLQNIFFS---GEYEQERVRVLETRSGTNETRSGV-- 539 (588)
Q Consensus 470 --~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~g---I~v~~G~~c~~~~~---~~~~~~~~~~l~~~~~~~~~~~g~-- 539 (588)
..++++++|++.+ . ...+.+++++.+ |.++.|..|..... ............. .|.
T Consensus 332 ~~~~~g~ivsf~l~~-----~-~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~--------~g~~~ 397 (421)
T 2ctz_A 332 FKGKPGAVLTFGLKG-----G-YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQ--------AGVSP 397 (421)
T ss_dssp HTTCCCSEEEEEETT-----H-HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHH--------HTCCT
T ss_pred ccCCCceEEEEEeCC-----C-HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHh--------cCCCC
Confidence 2468999999865 1 345566666654 45666643321100 0000000000111 222
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 540 SVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 540 ~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
+.||+|+|. ||++.+++.|.+.|
T Consensus 398 ~~vRlS~g~----e~~~~li~~l~~al 420 (421)
T 2ctz_A 398 EMVRLSVGL----EHVEDLKAELKEAL 420 (421)
T ss_dssp TEEEEECCS----SCHHHHHHHHHHHT
T ss_pred CeEEEEeCC----CCHHHHHHHHHHHh
Confidence 399999997 57777777776655
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=209.51 Aligned_cols=310 Identities=13% Similarity=0.128 Sum_probs=211.5
Q ss_pred CCeeeecCCCCC-CCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHG-LFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRI 188 (588)
Q Consensus 110 ~~~vyLD~a~~g-l~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~i 188 (588)
++.+|||++... ..|+.+++++.+.+... + . ..|+.. ...++|+.|
T Consensus 19 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~-~---------------------------~~y~~~---~~~~lr~~l 65 (335)
T 1uu1_A 19 RDKTYLALNENPFPFPEDLVDEVFRRLNSD--A-L---------------------------RIYYDS---PDEELIEKI 65 (335)
T ss_dssp CCSEEESSCCCSSCCCHHHHHHHHHTCCGG--G-G---------------------------GSCCCS---SCHHHHHHH
T ss_pred CcceECCCCCCCCCCCHHHHHHHHHHhhhh--h-h---------------------------hcCCCC---chHHHHHHH
Confidence 357999998875 36788888876554210 0 0 001110 145899999
Q ss_pred HHHhC---CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCH
Q 037063 189 MDFMN---ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHS 265 (588)
Q Consensus 189 a~~lg---a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~ 265 (588)
+++++ +++++ |++|+|+|+|+.+++.++ ||+|++. ..+... ...++..|++++.++.+ +++.+|+
T Consensus 66 a~~~~~~~~~~~~--v~~~~G~~~al~~~~~~~----gd~Vl~~-p~y~~~----~~~~~~~g~~~~~v~~~-~~~~~d~ 133 (335)
T 1uu1_A 66 LSYLDTDFLSKNN--VSVGNGADEIIYVMMLMF----DRSVFFP-PTYSCY----RIFAKAVGAKFLEVPLT-KDLRIPE 133 (335)
T ss_dssp HHHHTCSSCCGGG--EEEESSHHHHHHHHHHHS----SEEEECS-SSCHHH----HHHHHHHTCEEEECCCC-TTSCCCC
T ss_pred HHHcCCCCCCHHH--EEEcCChHHHHHHHHHHh----CCcEEEC-CCcHHH----HHHHHHcCCeEEEeccC-CCCCCCH
Confidence 99999 77654 999999999999999997 8887766 443312 34556779999999886 4556776
Q ss_pred HHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCC-CCCCCCcEEEec
Q 037063 266 GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLG-LSLFKPDFLICS 343 (588)
Q Consensus 266 e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~-l~~~~~D~vv~S 343 (588)
++| . ++++|++++++|+||..+|.+++ ++++..| ++|+|+++.....-..+. +...+.++++.|
T Consensus 134 ~~l----~---------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s 199 (335)
T 1uu1_A 134 VNV----G---------EGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRT 199 (335)
T ss_dssp CCC----C---------TTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEE
T ss_pred HHc----C---------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEec
Confidence 655 2 57999999999999999999999 8888888 899999976310001111 122346899999
Q ss_pred cCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHH
Q 037063 344 FYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHA 423 (588)
Q Consensus 344 ~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l 423 (588)
++|.+|.++.++|++++++++++.+...... .+.+.... +++.++|+..
T Consensus 200 ~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~----------------------------~~~~~~~~---~~~~~~l~~~ 248 (335)
T 1uu1_A 200 FSKAFSLAAQRVGYVVASEKFIDAYNRVRLP----------------------------FNVSYVSQ---MFAKVALDHR 248 (335)
T ss_dssp STTTTTCGGGCCEEEEECHHHHHHHHHHSCT----------------------------TCSCHHHH---HHHHHHHHTH
T ss_pred chhhcCCcccCeEEEEeCHHHHHHHHHhcCC----------------------------CCcCHHHH---HHHHHHhCCH
Confidence 9999983222379999988877665432110 01222221 3444555542
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcE
Q 037063 424 DALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNIS 503 (588)
Q Consensus 424 ~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~ 503 (588)
+ .++++.++.+++++++.+.|.++ | ++++ | ..+.++.+.+.+ .+...+.+.|.++||.
T Consensus 249 ~--~~~~~~~~~~~~~~~l~~~L~~~-------g---~~~~-~----~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~ 306 (335)
T 1uu1_A 249 E--IFEERTKFIVEERERMKSALREM-------G---YRIT-D----SRGNFVFVFMEK-----EEKERLLEHLRTKNVA 306 (335)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHH-------T---CCBC-C----CCSSEEEEECCT-----HHHHHHHHHHHHHTEE
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHC-------C---cEEc-C----CCCeEEEEECCC-----CCHHHHHHHHHHCCEE
Confidence 2 25778888899999999999875 2 2333 2 235666666543 3355666667778999
Q ss_pred eccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 504 LSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 504 v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
++.+ .+ ++|+|++ +.+|++++++.|+++
T Consensus 307 v~~~-----------------------------~~--~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 307 VRSF-----------------------------RE--GVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp EEEE-----------------------------TT--EEEEECC---CHHHHHHHHHHHHCC
T ss_pred EEEC-----------------------------CC--eEEEEeC---CHHHHHHHHHHHHhh
Confidence 8762 22 8999986 578999999998764
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-22 Score=215.16 Aligned_cols=359 Identities=11% Similarity=0.053 Sum_probs=219.5
Q ss_pred CCCCCCCHHHHHHhhhhcccCc-CCCCCCCCCCCCCCCCCcccccccccccccccccCCc--hhHHHHHHHHHHHHHhCC
Q 037063 118 IGHGLFSYSQMHSCSSNVHSSA-ASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSE--ESELESKIRKRIMDFMNI 194 (588)
Q Consensus 118 a~~gl~~~~~~~~~~~~~~~~~-~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~~~~~~~~r~~ia~~lga 194 (588)
++-.+.|+.|++++...+.... .++| .++. |++. ..++++.+|+++++++|+
T Consensus 61 as~n~~~~~V~eA~~~~l~~~y~~G~~------------------------g~r~-~~G~~~~~~lE~~a~~~~a~l~g~ 115 (490)
T 2a7v_A 61 ASENFCSRAALEALGSCLNNKYSEGYP------------------------GKRY-YGGAEVVDEIELLCQRRALEAFDL 115 (490)
T ss_dssp TTCCCCCHHHHHHHTSGGGTCCCCC-------------------------------------CTHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHcCCCccCCC------------------------cccc-cCccHHHHHHHHHHHHHHHHHcCC
Confidence 6777889999999876654321 2444 2221 2222 146667899999999999
Q ss_pred CCCCc-eEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHH-HH--HHHHhcCCE--EEEEeccCCCCccCHHH
Q 037063 195 SEDDY-TLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAAL-MI--ESSKKRGAR--VSSAEFAWPNLRIHSGK 267 (588)
Q Consensus 195 ~~~e~-~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~-~~--~~a~~~G~~--v~~v~~~~~~~~i~~e~ 267 (588)
+.+++ ..|++.|+|+|+.+++.++ +++||+|++ ...|.+....+ +. ..+...|.. ++.++++..++.+|.++
T Consensus 116 ~~~~~~~~v~~~sGt~An~~al~al-~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~ 194 (490)
T 2a7v_A 116 DPAQWGVNVQPYSGSPANLAVYTAL-LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQ 194 (490)
T ss_dssp CTTTEEEECCCSSHHHHHHHHHHHH-CCSCEECCC-------------------------------CCBCTTTCSBCHHH
T ss_pred CcccCceEEeCCchHHHHHHHHHHH-cCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHH
Confidence 86544 4577778999999999999 999999764 44443211111 00 011223443 44455555578999999
Q ss_pred HHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-----CCCCCCCCCCCCCcEEE
Q 037063 268 LMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS-----KDMDTLGLSLFKPDFLI 341 (588)
Q Consensus 268 l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~-----~d~~~l~l~~~~~D~vv 341 (588)
|++++.. .++++|++...+| |...|+++| ++|+++|+++++|++|..+ ....+++ .+|+++
T Consensus 195 le~~l~~-------~~~klIi~~~s~~--~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----~aDiv~ 261 (490)
T 2a7v_A 195 LALTARL-------FRPRLIIAGTSAY--ARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVT 261 (490)
T ss_dssp HHHHHHH-------HCCSEEEECCSSC--CSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEE
T ss_pred HHHHHhh-------cCCcEEEEcCCCC--CCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----CCCEEE
Confidence 9999962 3578888876554 567899999 9999999999999998643 1112221 389999
Q ss_pred eccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccc-cCCCCCccchhhHHHHHHHH
Q 037063 342 CSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS-KFPESSISGVSSKLVECKGL 420 (588)
Q Consensus 342 ~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~-e~GT~~~~~~~~~~al~~aL 420 (588)
+|+||.|+. |.| |+++.++++.. +.+. . +...... .. ..+.. ..|. ..|+++...+ +++..|+
T Consensus 262 ~S~hK~l~G-p~G-G~i~~~~~~~~-~~~~-~---~~~~~~~-l~--~~i~~---~~~~g~qggp~~~~i---aAla~Al 325 (490)
T 2a7v_A 262 TTTHKTLRG-ARS-GLIFYRKGVKA-VDPK-T---GREIPYT-FE--DRINF---AVFPSLQGGPHNHAI---AAVAVAL 325 (490)
T ss_dssp EESSGGGCS-CSC-EEEEEECSEEE-EETT-T---EEEEECC-CH--HHHHH---HHTTTTCCSCCHHHH---HHHHHHH
T ss_pred ECCcccCcc-ccc-hheeeccchhc-cccc-c---cchhhHH-HH--HHHHH---HhcccCCCCchHHHH---HHHHHHH
Confidence 999996642 877 99999886421 1100 0 0000000 00 00000 0110 2355655554 6667777
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhC
Q 037063 421 DHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRH 500 (588)
Q Consensus 421 ~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~ 500 (588)
..+..-+++...+++..++++|.+.|.++ ++++..+. ....++.+.+.+. | ++...+.+.|++.
T Consensus 326 ~~~~~~~~~~~~~~~~~na~~L~~~L~~~----------G~~v~~~~---t~t~lv~vdl~~~-g--~~~~~~~~~L~~~ 389 (490)
T 2a7v_A 326 KQACTPMFREYSLQVLKNARAMADALLER----------GYSLVSGG---TDNHLVLVDLRPK-G--LDGARAERVLELV 389 (490)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHT----------TCEEGGGS---CSSSEEEEECTTT-T--CCHHHHHHHHHHT
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHc----------CcEEecCC---CCCeEEEEEeCCC-C--CCHHHHHHHHHhC
Confidence 76643235778889999999999999984 45665421 2346777776542 2 5678889999999
Q ss_pred CcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCC----CCCHHHHHHHHHHHHHhhhh
Q 037063 501 NISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGC----LTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 501 gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~----~~t~eDv~~li~~l~~~l~~ 568 (588)
||.+..+.... .. .....+.||++... -.+++|+++++++|.+.++.
T Consensus 390 GI~v~~~~~p~--d~-------------------~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 390 SITANKNTCPG--DR-------------------SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp TEECEEECCTT--CC-------------------CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCccCC--CC-------------------CCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 99987652211 00 01222389997633 35899999999999998863
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=9.4e-22 Score=206.56 Aligned_cols=294 Identities=12% Similarity=-0.016 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCC--CCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYS--NPRLLTV-YDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~--gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
++.+++.+.+.+.+|++.+...|+||+|+|+|+.+++.++ .++ ||+|++. ..|++ . ...++..|++++.++
T Consensus 63 ~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~-~~~~~gd~vl~~~p~~~~-~----~~~~~~~g~~~~~~~ 136 (376)
T 3ezs_A 63 SLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFV-LFDYQNPTIAYPNPFYQI-Y----EGAAKFIKAKSLLMP 136 (376)
T ss_dssp HHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHH-TTTCSSCEEEEEESCCTH-H----HHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHH-cCCCCCCEEEEecCCcHh-H----HHHHHHcCCEEEEcc
Confidence 4444555555555587323345999999999999999998 788 9997654 44543 2 345677899999999
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcCCC-CCCCC
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALGSK-DMDTL 330 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~~~-d~~~l 330 (588)
.+ ++..+++ ++++.+. +++++|++++++|+||..+|.++ | ++|+++|+++|+|+++.... +-...
T Consensus 137 ~~-~~~~~~~-~l~~~~~--------~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~ 206 (376)
T 3ezs_A 137 LT-KENDFTP-SLNEKEL--------QEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPP 206 (376)
T ss_dssp CC-GGGTSCC-CCCHHHH--------HHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCC
T ss_pred cC-CCCCcch-hHHhhhc--------cCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCC
Confidence 87 3333444 6777776 57899999999999999999666 4 66899999999999976521 00111
Q ss_pred CC---------CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccccccccc
Q 037063 331 GL---------SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSK 401 (588)
Q Consensus 331 ~l---------~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e 401 (588)
.+ .....++++.|++|.+|.++.++|+++.++++++.+...... .
T Consensus 207 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~--------------------------~ 260 (376)
T 3ezs_A 207 SLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFRAY--------------------------L 260 (376)
T ss_dssp CHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHTT--------------------------T
T ss_pred CHHHccccccccccCcEEEEecchhccCCccceeEEEeeCHHHHHHHHHHHhh--------------------------h
Confidence 11 024478999999999984345589999988877666432211 0
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEee
Q 037063 402 FPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVF 481 (588)
Q Consensus 402 ~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~ 481 (588)
..+.+.... +++..+++..+. ++++.++.+.+++++.+.|..+ . .| ..+.++.+.+.
T Consensus 261 ~~~~~~~~~---~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~------------~--~~----~~~~~~~~~~~ 317 (376)
T 3ezs_A 261 GYTSANAIQ---KASEAAWLDDRH--AEFFRNIYANNLKLARKIFKNT------------L--IY----PYSFYVYLPVQ 317 (376)
T ss_dssp CCCCCHHHH---HHHHHHHHCSHH--HHHHHHHHHHHHHHHHHHSTTC------------C--CC----SBSSEEEEECS
T ss_pred cCCCChHHH---HHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHhcCC------------C--CC----CcceEEEEECC
Confidence 112222221 344455543221 5677777777777777766421 1 11 23455555554
Q ss_pred cCCCCCcCHHHHHHHHH-hCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHH
Q 037063 482 DWNGTRIDPALVQKLAD-RHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 482 ~~~g~~i~~~~v~~~l~-~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~ 560 (588)
+...+.+.|. ++||.+++|..|... ..+..+||+|++. +.|||+++++
T Consensus 318 -------~~~~~~~~l~~~~gi~v~~g~~~~~~----------------------~~~~~~iRis~~~--~~~~i~~~l~ 366 (376)
T 3ezs_A 318 -------NGENFAKTLYQNEGIITLPALYLGRN----------------------RIGADYVRLALVY--DTPLLEKPLE 366 (376)
T ss_dssp -------CHHHHHHHHHHHHCCBCEEGGGGCST----------------------TTTTTEEEEECCS--CHHHHHHHHH
T ss_pred -------CHHHHHHHHHHhCCEEEeCcHHhCCC----------------------CCCCCeEEEEEcC--CHHHHHHHHH
Confidence 2555555554 489999998776421 0122399999874 9999999999
Q ss_pred HHHHhhhh
Q 037063 561 FVSRFLDA 568 (588)
Q Consensus 561 ~l~~~l~~ 568 (588)
.|++++++
T Consensus 367 ~l~~~l~~ 374 (376)
T 3ezs_A 367 IIETYREN 374 (376)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHh
Confidence 99998764
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.6e-22 Score=208.71 Aligned_cols=324 Identities=10% Similarity=0.088 Sum_probs=218.0
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+.-|||+++. |..++.+.+++.+.+.....+. ... ..+..++
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-----------------------~~~--------~~~~~~~ 82 (392)
T 3ruy_A 34 EGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTS-----------------------RAF--------HSDQLGP 82 (392)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCC-----------------------TTS--------EETTHHH
T ss_pred CCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccc-----------------------ccc--------CCHHHHH
Confidence 56789998863 3357888888866653211100 000 1344678
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCC---------C-CCeEE-EcCCCchhHHHHHHHHHHhc-----
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFY---------S-NPRLL-TVYDHENEAAALMIESSKKR----- 247 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~---------~-gd~ll-~~~e~~s~~~~~~~~~a~~~----- 247 (588)
+++++++++|. + .++||+|+|+|+.+++..+ .. + +++|+ ....||+..... .......
T Consensus 83 l~~~la~~~g~--~--~v~~~~~gt~a~~~al~~~-~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~ 156 (392)
T 3ruy_A 83 WYEKVAKLTNK--E--MVLPMNTGAEAVETAIKTA-RRWAYDVKKVEANRAEIIVCEDNFHGRTMGA-VSMSSNEEYKRG 156 (392)
T ss_dssp HHHHHHHHHTC--S--EEEEESSHHHHHHHHHHHH-HHHHHHTSCCCTTCCEEEEETTCCCCSSHHH-HHTCSCTTTTTT
T ss_pred HHHHHHHhcCC--C--EEEEeCcHHHHHHHHHHHH-HHhhhhccCCCCCCcEEEEEcCCcCCCCHhh-hhccCChhhccc
Confidence 99999999983 3 4999999999999988865 32 2 55765 466666533222 1110000
Q ss_pred ----CCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEe
Q 037063 248 ----GARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLD 318 (588)
Q Consensus 248 ----G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvD 318 (588)
...+..++.+ |+++|+++|+ +++++|++.+++|+||.++| +++| ++|+++|+++|+|
T Consensus 157 ~~~~~~~~~~~~~~------d~~~l~~~l~--------~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~D 222 (392)
T 3ruy_A 157 FGPMLPGIIVIPYG------DLEALKAAIT--------PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVAD 222 (392)
T ss_dssp CCSCCSSEEEECTT------CHHHHHHHCC--------TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEE
T ss_pred cCCCCCCCeeeCcc------cHHHHHHHhc--------cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 1124444432 7899999987 78999999999999999999 9999 9999999999999
Q ss_pred CCCc-CCCC--CCCCCCCCCCCcEEEeccCccCCCCC-CceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 319 ATAL-GSKD--MDTLGLSLFKPDFLICSFYKIFGENP-SGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 319 aa~~-~~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P-~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
+++. ++.. ....+.....+|++++| |.++. . ..+|++++++++++.+.+...+. .
T Consensus 223 e~~~~~~~~g~~~~~~~~~~~~d~~~~S--K~l~g-G~~~~G~~~~~~~~~~~~~~~~~~~--~---------------- 281 (392)
T 3ruy_A 223 EIQTGLGRTGKVFACDWDNVTPDMYILG--KALGG-GVFPISCAAANRDILGVFEPGSHGS--T---------------- 281 (392)
T ss_dssp CTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGT-TTSCCEEEEECHHHHTTCCTTSSCC--S----------------
T ss_pred echhCCCccccchhhhccCCCCCEEEEc--hhhhC-ChhhhEEEEECHHHHhhhccCCcCC--C----------------
Confidence 9984 2211 11111112347887665 97661 1 45899999998877665543221 0
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
| +.+.... +++..+|+.+.. +++.++.+.+++++.+.|.++. .+.+.... ..+.
T Consensus 282 ----~----~~~~~~~---~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~-------~~~~~~~~-----~~g~ 335 (392)
T 3ruy_A 282 ----F----GGNPLAC---AVSIAALEVLEE---EKLTERSLQLGEKLVGQLKEID-------NPMITEVR-----GKGL 335 (392)
T ss_dssp ----S----TTCHHHH---HHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTCC-------CTTEEEEE-----EETT
T ss_pred ----C----CCCHHHH---HHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhc-------CCCceEEE-----eeee
Confidence 0 1222222 455566766544 6788899999999999999862 23444332 2467
Q ss_pred EEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHH
Q 037063 475 SLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFED 554 (588)
Q Consensus 475 iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eD 554 (588)
++.+.+.+ +...+.+.|.++||.+++|. . ..||+++++.++.||
T Consensus 336 ~~~~~~~~------~~~~l~~~l~~~gi~v~~~~----------------------------~--~~iRi~~~~~~~~~~ 379 (392)
T 3ruy_A 336 FIGIELNE------PARPYCEQLKAAGLLCKETH----------------------------E--NVIRIAPPLVISEED 379 (392)
T ss_dssp EEEEEESS------CSHHHHHHHHTTTEECCCBT----------------------------T--TEEEECCCTTCCHHH
T ss_pred EEEEEEcc------hHHHHHHHHHHCCcEEecCC----------------------------C--CEEEEECCCCCCHHH
Confidence 88888654 35667777778999988651 1 289999999999999
Q ss_pred HHHHHHHHHHhhh
Q 037063 555 TYRLWAFVSRFLD 567 (588)
Q Consensus 555 v~~li~~l~~~l~ 567 (588)
++++++.|+++++
T Consensus 380 i~~~~~~l~~~l~ 392 (392)
T 3ruy_A 380 LEWAFQKIKAVLS 392 (392)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998763
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=217.44 Aligned_cols=316 Identities=10% Similarity=0.022 Sum_probs=201.0
Q ss_pred HHHHHHHHHHh------CCCCCCceEEEecCHHHHHHHHHHhCCCCCCC--------------eEEE--cCCCchhHHHH
Q 037063 182 SKIRKRIMDFM------NISEDDYTLVFTANQSSAFKLLAESYPFYSNP--------------RLLT--VYDHENEAAAL 239 (588)
Q Consensus 182 ~~~r~~ia~~l------ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd--------------~ll~--~~e~~s~~~~~ 239 (588)
.++|+.|++++ ++++++ |+||+|+|+|+++++.++ .++|| +|++ ...|+. ....
T Consensus 86 ~~lr~~ia~~l~~~~g~~~~~~~--i~~t~G~t~al~~~~~~l-~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~-~~~~ 161 (444)
T 3if2_A 86 SAFIDALVGFFNRHYDWNLTSEN--IALTNGSQNAFFYLFNLF-GGAFVNEHSQDKESKSVDKSILLPLTPEYIG-YSDV 161 (444)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGG--EEEESSHHHHHHHHHHHS-SEEEECC-------CEEEEEEEESSSSCCGG-GTTC
T ss_pred HHHHHHHHHHHHhhcCCCCCHHH--EEEecCcHHHHHHHHHHH-hCCCccccccccccccccceEEEeCCCCccc-hhhc
Confidence 46777777776 555554 999999999999999999 88887 6654 344543 1110
Q ss_pred H--HHHHHhcCCEEEEEeccCCCC----ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHH
Q 037063 240 M--IESSKKRGARVSSAEFAWPNL----RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAA 309 (588)
Q Consensus 240 ~--~~~a~~~G~~v~~v~~~~~~~----~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~ 309 (588)
+ .......|..+..++++.+++ .+|+++|++++.. ..+++++|++++++|+||.++| +++| ++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~-----~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~ 236 (444)
T 3if2_A 162 HVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPAL-----KEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAK 236 (444)
T ss_dssp CSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHH-----HTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred ccccchhhccCceEEecccccccCccccCCCHHHHHHHHHh-----cCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHH
Confidence 0 001245688888888763233 6899999988420 0168999999999999999999 6667 8899
Q ss_pred HcCcEEEEeCCCcCCCC---CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCC
Q 037063 310 EKGWHVLLDATALGSKD---MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFS 386 (588)
Q Consensus 310 ~~g~~vvvDaa~~~~~d---~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~ 386 (588)
++|+++|+|+++..+.. ...........++++.|++|+ +.++.++|++++++++++.+.......
T Consensus 237 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~----------- 304 (444)
T 3if2_A 237 RYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMNAVV----------- 304 (444)
T ss_dssp HTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHHHHH-----------
T ss_pred HCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-cCCCCceEEEEECHHHHHHHHHHHHhc-----------
Confidence 99999999999764311 111111223478999999996 532456899988887776654322110
Q ss_pred cccccccccccccccCCCCCccchhhHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC--eE
Q 037063 387 EIIELETLDESSQSKFPESSISGVSSKLVECKGLDH---ADALGLILISNRARYLINWLANALMNLHHPHSETGIP--LV 461 (588)
Q Consensus 387 ~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~---l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~--~v 461 (588)
.. +.+.... +++...++. ...+ .+.+.++.+...+.+.+.|.+. .+ ++
T Consensus 305 --------------~~-~~~~~~~---~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~--------l~~~~~ 357 (444)
T 3if2_A 305 --------------NL-APTRFGA---AIATPLVANDRIKQLS-DNEIKPFYQKQATLAVKLLKQA--------LGDYPL 357 (444)
T ss_dssp --------------HS-SCCCHHH---HHHHHHHHTSHHHHHH-HHTHHHHHHHHHHHHHHHHHHH--------SSSSSE
T ss_pred --------------cC-CCChHHH---HHHHHHHHcCchhHHH-HHHHHHHHHHHHHHHHHHHHHh--------cccCCc
Confidence 00 1111111 222222321 1110 1124445555666666666552 12 36
Q ss_pred EEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccE
Q 037063 462 RIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSV 541 (588)
Q Consensus 462 ~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~ 541 (588)
.++.| ..+.++.+.+... .++...+.+.|.++||.+++|..|..+..... ...+.+.
T Consensus 358 ~~~~~----~~g~~~~~~~~~~---~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~----------------~~~~~~~ 414 (444)
T 3if2_A 358 MIHKP----EGAIFLWLWFKDL---PISTLDLYERLKAKGTLIVPSEYFFPGVDVSD----------------YQHAHEC 414 (444)
T ss_dssp EEECC----CBSSEEEEEETTC---SSCHHHHHHHHHHTTEECEEGGGSCTTCCCTT----------------CSGGGSE
T ss_pred eEecC----CccEEEEEEcCCC---CCCHHHHHHHHHHCCeEEecchhhcCCCCCcc----------------cccCCCe
Confidence 66655 2355666666531 15677888888899999999988753211100 0011238
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhhhhhh
Q 037063 542 VTAALGCLTNFEDTYRLWAFVSRFLDADF 570 (588)
Q Consensus 542 vRvSlg~~~t~eDv~~li~~l~~~l~~~~ 570 (588)
||+|++. +.|||+++++.|++++++.+
T Consensus 415 iRis~~~--~~e~i~~~l~~l~~~~~~~~ 441 (444)
T 3if2_A 415 IRMSIAA--DEQTLIDGIKVIGEVVRELY 441 (444)
T ss_dssp EEEESSS--CHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeC--CHHHHHHHHHHHHHHHHHHH
Confidence 9999997 99999999999999887654
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-22 Score=211.65 Aligned_cols=343 Identities=9% Similarity=-0.034 Sum_probs=220.7
Q ss_pred CCeeeecCCCCC-CCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHG-LFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRI 188 (588)
Q Consensus 110 ~~~vyLD~a~~g-l~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~i 188 (588)
.+.++|+.+... +.|+.+.+++.+.+..... + .|+.. .-..++|+.+
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-~-----------------------------~y~~~--~g~~~l~~~l 70 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDNM-N-----------------------------QYTRG--FGHPALVKAL 70 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTCGGG-G-----------------------------SCCCT--TCCHHHHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhCccc-c-----------------------------CCCCC--CChHHHHHHH
Confidence 567899988876 3567777877655432100 0 01100 0012455555
Q ss_pred HHHhC------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEeccC---
Q 037063 189 MDFMN------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEFAW--- 258 (588)
Q Consensus 189 a~~lg------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~~~--- 258 (588)
+++++ ++++ ..|++|+|+++|+.+++.++ +++||+|++. ..|+. . ...++..|++++.++++.
T Consensus 71 a~~~~~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~~~~-~----~~~~~~~g~~~~~~~~~~~~~ 143 (410)
T 3e2y_A 71 SCLYGKIYQRQIDPN-EEILVAVGAYGSLFNSIQGL-VDPGDEVIIMVPFYDC-Y----EPMVRMAGAVPVFIPLRSKPT 143 (410)
T ss_dssp HHHHHHHHTSCCCTT-TSEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT-H----HHHHHHTTCEEEEEECEECCC
T ss_pred HHHHHHHhCCCCCCC-CCEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchh-h----HHHHHHcCCEEEEEecccccc
Confidence 55554 4441 34999999999999999999 8999996654 44443 2 344567899999998862
Q ss_pred -------CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcCC---
Q 037063 259 -------PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALGS--- 324 (588)
Q Consensus 259 -------~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~--- 324 (588)
.++.+++++|+++++ +++++|++++++|+||..+| +++| ++|+++|+++|+|+++...
T Consensus 144 ~g~~~~~~~~~~d~~~l~~~~~--------~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~ 215 (410)
T 3e2y_A 144 DGMKWTSSDWTFDPRELESKFS--------SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYT 215 (410)
T ss_dssp CSSCCBGGGEECCHHHHHTTCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT
T ss_pred ccccccccCCcCCHHHHHhhcC--------CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccC
Confidence 245689999998887 68999999999999999985 5556 8899999999999997541
Q ss_pred -C---CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccc
Q 037063 325 -K---DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS 400 (588)
Q Consensus 325 -~---d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~ 400 (588)
. .+..++ .....++++.|++|.+|.+..++|++++++++++.+......
T Consensus 216 ~~~~~~~~~~~-~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~-------------------------- 268 (410)
T 3e2y_A 216 GHTHVKIATLP-GMWERTITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQN-------------------------- 268 (410)
T ss_dssp TCCCCCGGGST-TCGGGEEEEEEHHHHSSCGGGCCEEEECCHHHHHHHHHHHHT--------------------------
T ss_pred CCCCCCHHHcC-CccCeEEEEecchhhcCCCCceEEEEEECHHHHHHHHHHHHh--------------------------
Confidence 1 111121 112245889999999983234589999998887765432211
Q ss_pred cCCCCCccchhhHHHHHHHHHHH------HHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 401 KFPESSISGVSSKLVECKGLDHA------DALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 401 e~GT~~~~~~~~~~al~~aL~~l------~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
...+.+.... +++..+|+.. ....++++.++.+.+++++.+.|.++ +++++.|. .+.
T Consensus 269 ~~~~~~~~~~---~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~----~~~ 331 (410)
T 3e2y_A 269 SFYTCATPLQ---AALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV----------GLKPIVPD----GGY 331 (410)
T ss_dssp TTCCCCHHHH---HHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT----------TCEEEBCS----BSS
T ss_pred hccCCChHHH---HHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC----------CCeecCCC----ccE
Confidence 0011111111 3333444420 01126788888899999999999874 35555542 344
Q ss_pred EEEEEeecCCCCCcC---------HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe
Q 037063 475 SLAFNVFDWNGTRID---------PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA 545 (588)
Q Consensus 475 iv~f~~~~~~g~~i~---------~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS 545 (588)
++.+.+..... .++ .+.+.++++++||.+.+|..|...... ..+.++||+|
T Consensus 332 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~-------------------~~~~~~iRis 391 (410)
T 3e2y_A 332 FIIADVSSLGA-DLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSK-------------------PHFEKLVRFC 391 (410)
T ss_dssp EEEEECGGGCC-CCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTH-------------------HHHTTEEEEE
T ss_pred EEEEEchhhhc-ccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCC-------------------CCCCCEEEEE
Confidence 55555543111 111 144566788899999998776421000 0112399999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q 037063 546 LGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 546 lg~~~t~eDv~~li~~l~~~ 565 (588)
++. +.|||+++++.|+++
T Consensus 392 ~~~--~~e~l~~~l~~l~~~ 409 (410)
T 3e2y_A 392 FIK--KDSTLDAAEEIFRAW 409 (410)
T ss_dssp CCC--CHHHHHHHHHHHHTC
T ss_pred EcC--CHHHHHHHHHHHHhc
Confidence 876 999999999998764
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=219.68 Aligned_cols=314 Identities=12% Similarity=0.095 Sum_probs=198.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+++++++++++|++ ++++++|+++|+.+++. + +++||+|++ ...|++ ....+...++..|++++.++.
T Consensus 132 ~~~~~~l~~~la~~~g~~----~~i~~~sGt~al~~~l~-~-~~~Gd~Vi~~~~~y~~-~~~~~~~~~~~~G~~v~~v~~ 204 (464)
T 1ibj_A 132 NPTRDALESLLAKLDKAD----RAFCFTSGMAALSAVTH-L-IKNGEEIVAGDDVYGG-SDRLLSQVVPRSGVVVKRVNT 204 (464)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHT-T-SCTTCEEEEESSCCHH-HHHHHHHTSGGGTCEEEEECT
T ss_pred CHHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHH-H-hCCCCEEEEECCCchh-HHHHHHHHHHHcCCEEEEeCC
Confidence 346789999999999974 37788888999998886 5 789999665 445554 333333455778999999986
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ |.++|+++|+ +++++|++++++|+||.++|+++| ++|+++|++||+|+++..+....+++ +
T Consensus 205 ~------d~~~l~~~i~--------~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~~---~ 267 (464)
T 1ibj_A 205 T------KLDEVAAAIG--------PQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLE---L 267 (464)
T ss_dssp T------SHHHHHHHCC--------SSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGG---T
T ss_pred C------CHHHHHHHhc--------cCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChhh---c
Confidence 4 7899999987 789999999999999999999999 99999999999999988763222332 3
Q ss_pred CCcEEEeccCccCCCCCCce--EEEEEeC-cchhcccCCC--CCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 336 KPDFLICSFYKIFGENPSGF--GCLFVKK-SSASVLSGST--SSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~--G~L~v~~-~~~~~l~~~~--~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
++|+++.|+||++|. |.|+ |++++++ ++++.+.... .| + +.+....
T Consensus 268 ~~div~~S~sK~~~g-~~Gl~~G~l~~~~~~l~~~l~~~~~~~g--~--------------------------~~~~~~~ 318 (464)
T 1ibj_A 268 GADIVMHSATKFIAG-HSDVMAGVLAVKGEKLAKEVYFLQNSEG--S--------------------------GLAPFDC 318 (464)
T ss_dssp TCSEEEEETTTTTTC-SSCCCCEEEEECSHHHHHHHHHHHHHTT--C--------------------------BCCHHHH
T ss_pred CCEEEEECCcccccC-CCCCcEEEEEEChHHHHHHHHHHHHhcC--C--------------------------CCCHHHH
Confidence 489999999997763 6675 9999996 5656554322 11 0 1111110
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH--HcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANAL--MNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L--~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
.+...+|+.+... ++...+....+.+++.+.- .+..++.- ...|+++++.+.. ...++++.|.+.+ .
T Consensus 319 ---~a~~~al~~~~~r-~~~~~~~~~~l~~~l~~~~~v~~~~~~~L-~~~p~~~~~~~~~-~g~g~~~~~~l~~-----~ 387 (464)
T 1ibj_A 319 ---WLCLRGIKTMALR-IEKQQENARKIAMYLSSHPRVKKVYYAGL-PDHPGHHLHFSQA-KGAGSVFSFITGS-----V 387 (464)
T ss_dssp ---HHHHHHHTTHHHH-HHHHHHHHHHHHHHHHTCTTCCEEECTTS-TTSTTHHHHTTTC-SCCCSEEEEECSC-----H
T ss_pred ---HHHHhchhhHHHH-HHHHHHHHHHHHHHHHhCCCceEEECCCC-CCCcchHHHhccC-CCCceEEEEEECC-----H
Confidence 1222344322111 2333333344444443210 01001100 0124455555432 1357899998742 1
Q ss_pred C-HHHHHHHHHhCCcEecccc----ccCcccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCCCCCHHHHHHHHHH
Q 037063 489 D-PALVQKLADRHNISLSCGF----LQNIFFSGEYEQERVRVLETRSGTNETRSGV--SVVTAALGCLTNFEDTYRLWAF 561 (588)
Q Consensus 489 ~-~~~v~~~l~~~gI~v~~G~----~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~~t~eDv~~li~~ 561 (588)
. ...+.+.|...||.++.|. .|++....... ... ......|. +.||+|+|. ||++++++.
T Consensus 388 ~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~------~~~---~~~~~~g~~~~~iRlsvg~----edi~~li~~ 454 (464)
T 1ibj_A 388 ALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHAS------IPA---EVREARGLTEDLVRISAGI----EDVDDLISD 454 (464)
T ss_dssp HHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCS------CCS---SSSSSSSCCTTCEEEECCS----SCHHHHHHH
T ss_pred HHHHHHHHhcCcceEeecCCCCceeeeccccccccc------CCH---HHHHhcCCCcCeEEEEeCC----CCHHHHHHH
Confidence 1 2234455555799999886 56543211000 000 00001232 389999997 899999999
Q ss_pred HHHhhhh
Q 037063 562 VSRFLDA 568 (588)
Q Consensus 562 l~~~l~~ 568 (588)
|++.+++
T Consensus 455 L~~al~~ 461 (464)
T 1ibj_A 455 LDIAFKT 461 (464)
T ss_dssp HHHHHHS
T ss_pred HHHHHhh
Confidence 9998764
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-22 Score=209.57 Aligned_cols=309 Identities=12% Similarity=0.061 Sum_probs=202.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++.+.+|+.+++++|+++++ |++++| |+|+.+++.++ +++||+|++ ...|++....+........+..++.+++
T Consensus 70 ~~~~~~~~~~la~~~g~~~~~--i~~~sG-t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 145 (417)
T 3n0l_A 70 DEIETLAIERCKKLFNCKFAN--VQPNSG-SQANQGVYAAL-INPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGV 145 (417)
T ss_dssp HHHHHHHHHHHHHHHTCSEEE--CCCSSH-HHHHHHHHHHH-SCTTCEEEEECC----------------CCSEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCcc--eEeccH-HHHHHHHHHHh-cCCCCEEEecccccccccchhhhhhhhcceeeeEeccC
Confidence 456667889999999996543 767666 89999999999 899999664 4455432121111111224566777777
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC---CCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK---DMDTLGL 332 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~---d~~~l~l 332 (588)
+ .++.+|+++|++++++ .++++|++++++| |...|+++| ++|+++|+++|+|+++..+. ......+
T Consensus 146 ~-~~~~~d~~~l~~~i~~-------~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~ 215 (417)
T 3n0l_A 146 E-LDGRIDYEKVREIAKK-------EKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPF 215 (417)
T ss_dssp C-TTSSCCHHHHHHHHHH-------HCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCT
T ss_pred C-CCCCcCHHHHHHHHHh-------cCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCcc
Confidence 7 6778999999999972 3688888877664 999999999 99999999999999975531 1111112
Q ss_pred CCCCCcEEEeccCccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchh
Q 037063 333 SLFKPDFLICSFYKIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVS 411 (588)
Q Consensus 333 ~~~~~D~vv~S~~K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~ 411 (588)
. .+|++++|+||.++. |.| |+++.+ +++++.+......+ ..|+++...+
T Consensus 216 ~--~~di~~~s~sK~l~g-~~~-G~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~- 265 (417)
T 3n0l_A 216 P--YAHVVSSTTHKTLRG-PRG-GIIMTNDEELAKKINSAIFPG-------------------------IQGGPLMHVI- 265 (417)
T ss_dssp T--TCSEEEEESSTTTCS-CSC-EEEEESCHHHHHHHHHHHTTT-------------------------TCSSCCHHHH-
T ss_pred c--cceEEEeeCccccCC-CCe-eEEEECCHHHHHHHhhhhCCc-------------------------ccCCcHHHHH-
Confidence 1 379999999997652 664 999998 46666554322110 1123333332
Q ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHH
Q 037063 412 SKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPA 491 (588)
Q Consensus 412 ~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~ 491 (588)
+++..++......+++.+.++...+++++.+.|.++ +++++.+. ..+.++.+.+... .++..
T Consensus 266 --aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~---~~~~~~~~~~~~~---~~~~~ 327 (417)
T 3n0l_A 266 --AAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR----------KFKLVSDG---TDNHLVLMSFLDR---EFSGK 327 (417)
T ss_dssp --HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----------TCEEGGGS---CSSSEEEEECTTS---SSCHH
T ss_pred --HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC----------CceeccCC---CCceEEEEEcccC---CCCHH
Confidence 455556655432346788889999999999999874 34554421 2345555555431 25678
Q ss_pred HHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC----CCHHHHHHHHHHHHHhhh
Q 037063 492 LVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL----TNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 492 ~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~----~t~eDv~~li~~l~~~l~ 567 (588)
.+.++|.++||.++.+..- .... ...+...+|+++... .+.+||+++++.|++.++
T Consensus 328 ~~~~~l~~~gi~v~~~~~~--~~~~------------------~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~ 387 (417)
T 3n0l_A 328 DADLALGNAGITANKNTVP--GEIR------------------SPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILD 387 (417)
T ss_dssp HHHHHHHHTTEECEECCCT--TCCS------------------CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCeEEeccccC--CCCc------------------ccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 8899999999999864311 0000 001223799987643 468999999999999886
Q ss_pred h
Q 037063 568 A 568 (588)
Q Consensus 568 ~ 568 (588)
.
T Consensus 388 ~ 388 (417)
T 3n0l_A 388 D 388 (417)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-22 Score=224.99 Aligned_cols=322 Identities=11% Similarity=-0.025 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
..+.++++.+|+++|++ ..+++++|+|+|+.+++.++ +++||+|+++ ..|.+ .+.. .++..|++++.++.+
T Consensus 173 ~~i~e~e~~lA~~~gae---~~i~v~nGtt~an~~ai~al-~~pGD~VLv~~~~H~S-~~~~---~~~l~Ga~~v~v~~~ 244 (730)
T 1c4k_A 173 GPAVAAEKHAARVYNAD---KTYFVLGGSSNANNTVTSAL-VSNGDLVLFDRNNHKS-VYNS---ALAMAGGRPVYLQTN 244 (730)
T ss_dssp THHHHHHHHHHHHTTCS---EEEEESSHHHHHHHHHHHHH-CCTTCEEEEETTCCHH-HHHH---HTTTTCCEEEEECEE
T ss_pred HHHHHHHHHHHHHHCCC---cEEEECCHHHHHHHHHHHHh-cCCCCEEEEcCCchHH-HHHH---HHHHCCCEEEEEeCC
Confidence 46789999999999995 34888888889999999999 8999997755 45544 3322 245679999998775
Q ss_pred CCC----CccCHHHH-----HHHHhhhccc-cCCCcc-eEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-
Q 037063 258 WPN----LRIHSGKL-----MKKIVGKRKK-KKKKKR-GLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS- 324 (588)
Q Consensus 258 ~~~----~~i~~e~l-----~~~i~~~~~~-~~~~~t-~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~- 324 (588)
..+ +.+|+++| +++|++...+ ....++ ++++++++ |++|.+.|+++| ++|+++|++|++|+++...
T Consensus 245 ~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~ 323 (730)
T 1c4k_A 245 RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYE 323 (730)
T ss_dssp ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGG
T ss_pred ccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEccccccc
Confidence 221 44788888 8888620000 001112 89999886 689999999999 9999999999999997542
Q ss_pred -CC-----CCCCCCCCCCCc----EEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 325 -KD-----MDTLGLSLFKPD----FLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 325 -~d-----~~~l~l~~~~~D----~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
.. ...+++..+++| +++.|+||++|. |.+.|+++++++.+..-. ..++ ...+...
T Consensus 324 ~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g-~~~gg~I~v~~~~l~g~~-------~~i~-------~~~~~~~ 388 (730)
T 1c4k_A 324 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG-FSQTSQIHKKDSHIKGQL-------RYCD-------HKHFNNS 388 (730)
T ss_dssp GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC-CTTCEEEEEECGGGTTST-------TCCC-------HHHHHHH
T ss_pred ccCcccCCcCcccccccCCCCCCEEEEECCCCCCCC-CCCEEEEEecchhhcCcc-------cccC-------HHHHHHH
Confidence 11 123443334577 999999997773 778899999987642100 0000 0000000
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCC-----
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHADA-LGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKV----- 468 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~-~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~----- 468 (588)
. ..+ +.+++++..+ +++..|++++.. .| +...++...+++++++.|.+. ++++++++|..
T Consensus 389 ~-~~~-~stsp~~~~i---aal~aA~~~l~~~~g-~~~~~~~~~~a~~lr~~L~~~--------i~g~~v~~p~~~~~~~ 454 (730)
T 1c4k_A 389 F-NLF-MSTSPFYPMY---AALDVNAAMQEGEAG-RKLWHDLLITTIEARKKLIKA--------GSMFRPFVPPVVNGKK 454 (730)
T ss_dssp H-HHH-SCSSCCHHHH---HHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHT--------TCSSEESSCSEETTEE
T ss_pred H-HHh-CCCCCcHHHH---HHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhh--------CCCeEEcccccccccc
Confidence 0 023 5677776664 777788887766 34 555678889999999999871 25677776632
Q ss_pred ---------------------------CCC-cc--cE----EEEEeec---C----CCCCcCHHHHHHHHHhCCcEeccc
Q 037063 469 ---------------------------MFD-RG--PS----LAFNVFD---W----NGTRIDPALVQKLADRHNISLSCG 507 (588)
Q Consensus 469 ---------------------------~~~-rg--~i----v~f~~~~---~----~g~~i~~~~v~~~l~~~gI~v~~G 507 (588)
... .+ .+ ++|.+++ . .+..++...+.+.|.++||.+...
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~ 534 (730)
T 1c4k_A 455 WEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS 534 (730)
T ss_dssp GGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE
T ss_pred ccccccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC
Confidence 000 11 11 5666642 1 112367888999998889987531
Q ss_pred cccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 508 FLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 508 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+...||++++..+|.+|+++|+++|.++.+.
T Consensus 535 ------------------------------~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~ 565 (730)
T 1c4k_A 535 ------------------------------DLNSILFLMTPAETPAKMNNLITQLLQLQRL 565 (730)
T ss_dssp ------------------------------CSSEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 2228999999999999999999999998654
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-22 Score=213.80 Aligned_cols=307 Identities=12% Similarity=0.070 Sum_probs=201.3
Q ss_pred HHHHHHHHHHhC--------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEE
Q 037063 182 SKIRKRIMDFMN--------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 182 ~~~r~~ia~~lg--------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
.++|+.++++++ +++++ |++|+|+|+++.+++.++ .++||+|++. ..|++ .. ..+++..|++++
T Consensus 86 ~~lr~~la~~~~~~~g~~~~~~~~~--i~~~~G~~~ai~~~~~~~-~~~gd~Vl~~~p~y~~-~~---~~~~~~~g~~~~ 158 (428)
T 1iay_A 86 PEFRKAIAKFMEKTRGGRVRFDPER--VVMAGGATGANETIIFCL-ADPGDAFLVPSPYYPA-FN---RDLRWRTGVQLI 158 (428)
T ss_dssp HHHHHHHHHHHHHHTTTCSCCCTTS--CEEEEHHHHHHHHHHHHH-CCTTCEEEEESSCCTT-HH---HHTTTTTCCEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCCChhh--EEEccChHHHHHHHHHHh-CCCCCeEEEccCCCcc-hH---HHHHHhcCCEEE
Confidence 467777777776 65554 999999999999999998 7899997654 44543 22 123345799999
Q ss_pred EEeccCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcCC-C-
Q 037063 253 SAEFAWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALGS-K- 325 (588)
Q Consensus 253 ~v~~~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~-~- 325 (588)
.++.+.. +..+|+++|++++++. .....++++|++++++|+||..+| +++| ++|+++|+++|+|+++... .
T Consensus 159 ~v~~~~~~~~~~d~~~l~~~l~~~--~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~ 236 (428)
T 1iay_A 159 PIHCESSNNFKITSKAVKEAYENA--QKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFD 236 (428)
T ss_dssp EECCCTTTTTCCCHHHHHHHHHHH--HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCS
T ss_pred EeecCCccCCcCCHHHHHHHHHHH--HhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccC
Confidence 9998632 3468999999998721 111246899999999999999999 7777 8999999999999997642 1
Q ss_pred --CCCC-CCCC------CCCCc--EEEeccCccCCCCCCceEEEEE-eCcchhcccCCCCCCCceEeeecCCCccccccc
Q 037063 326 --DMDT-LGLS------LFKPD--FLICSFYKIFGENPSGFGCLFV-KKSSASVLSGSTSSVSTIMGIEPSFSEIIELET 393 (588)
Q Consensus 326 --d~~~-l~l~------~~~~D--~vv~S~~K~~G~~P~G~G~L~v-~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~ 393 (588)
...+ ..+. .+.+| +++.|++|.+|.+..++|++++ ++++++.+......
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~------------------- 297 (428)
T 1iay_A 237 TPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSF------------------- 297 (428)
T ss_dssp SSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTT-------------------
T ss_pred CCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhc-------------------
Confidence 0101 0111 01257 8899999999842233699999 45566554321100
Q ss_pred ccccccccCCCCCccchhhHHHHHHHHHHH---HHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCC
Q 037063 394 LDESSQSKFPESSISGVSSKLVECKGLDHA---DALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMF 470 (588)
Q Consensus 394 ~~~~~f~e~GT~~~~~~~~~~al~~aL~~l---~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~ 470 (588)
.+.+.... +++..+|+.. ++ .++++.++++.+++++.+.|.++ +++++.+
T Consensus 298 ---------~~~~~~~~---~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~---- 350 (428)
T 1iay_A 298 ---------GLVSTQTQ---YFLAAMLSDEKFVDN-FLRESAMRLGKRHKHFTNGLEVV----------GIKCLKN---- 350 (428)
T ss_dssp ---------SCCCHHHH---HHHHHHTTCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT----------TCCBCCC----
T ss_pred ---------ccCCHHHH---HHHHHHhcChHHHHH-HHHHHHHHHHHHHHHHHHHHHhc----------CCcccCC----
Confidence 01111111 2333444432 22 25678888889999999999885 2334332
Q ss_pred CcccEEEEEeecCCCCC--cCHHHHHHHH-HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecC
Q 037063 471 DRGPSLAFNVFDWNGTR--IDPALVQKLA-DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALG 547 (588)
Q Consensus 471 ~rg~iv~f~~~~~~g~~--i~~~~v~~~l-~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg 547 (588)
..+.++.+.+.+..... .....+.+.| +++||.++.|..+.. .+.++||+|++
T Consensus 351 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~------------------------~~~~~iRis~~ 406 (428)
T 1iay_A 351 NAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFEC------------------------QEPGWFRVCFA 406 (428)
T ss_dssp SSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC------------------------SSSSEEEEECS
T ss_pred CeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCC------------------------CCCCEEEEEEe
Confidence 23556666765411000 1133455555 456999998754421 11238999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhh
Q 037063 548 CLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 548 ~~~t~eDv~~li~~l~~~l~~ 568 (588)
..+.||++++++.|++++++
T Consensus 407 -~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 407 -NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp -SSCHHHHHHHHHHHHHHHHT
T ss_pred -cCCHHHHHHHHHHHHHHHhc
Confidence 67999999999999998764
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-22 Score=212.68 Aligned_cols=302 Identities=12% Similarity=0.123 Sum_probs=207.0
Q ss_pred HHHHHHHHHHh-----CCCCCCc-eEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHh-cCCEEEE
Q 037063 182 SKIRKRIMDFM-----NISEDDY-TLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKK-RGARVSS 253 (588)
Q Consensus 182 ~~~r~~ia~~l-----ga~~~e~-~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~-~G~~v~~ 253 (588)
.++|+.|++++ ++++++. .|++|+|+|+|+.+++.++ +++||+|++. ..|+. . ...++. .|++++.
T Consensus 91 ~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~y~~-~----~~~~~~~~g~~~~~ 164 (430)
T 2x5f_A 91 EELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLF-VNQDDTILLPEHNWGN-Y----KLVFNTRNGANLQT 164 (430)
T ss_dssp HHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHH-CCTTCEEEEESSCCTH-H----HHHHTTTTCCEEEE
T ss_pred HHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHH-hCCCCEEEEcCCcCcc-H----HHHHHHhcCCeEEE
Confidence 47888888888 7765320 2999999999999999999 8999997654 44543 2 345566 8999999
Q ss_pred EeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHH-----cCcEEEEeCCCcCC
Q 037063 254 AEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAE-----KGWHVLLDATALGS 324 (588)
Q Consensus 254 v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~-----~g~~vvvDaa~~~~ 324 (588)
++++..++.+|+++|+++++. . ..+++++++++++|+||..+| +++| ++|++ +|+++|+|+++...
T Consensus 165 ~~~~~~~~~~d~~~l~~~l~~----~-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~ 239 (430)
T 2x5f_A 165 YPIFDKDGHYTTDSLVEALQS----Y-NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGL 239 (430)
T ss_dssp ECCBCTTSCBCSHHHHHHHHH----C-CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTC
T ss_pred EeccCccCCcCHHHHHHHHHh----c-CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccc
Confidence 998743467899999999972 0 127899999999999999999 6677 88999 99999999996542
Q ss_pred -CC---CCCC--CCCC-CCC---cEEEeccCccCCCCCCceEEEEE---eCcchhcccCCCCCCCceEeeecCCCccccc
Q 037063 325 -KD---MDTL--GLSL-FKP---DFLICSFYKIFGENPSGFGCLFV---KKSSASVLSGSTSSVSTIMGIEPSFSEIIEL 391 (588)
Q Consensus 325 -~d---~~~l--~l~~-~~~---D~vv~S~~K~~G~~P~G~G~L~v---~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~ 391 (588)
.+ ..++ .+.. ... ++++.|++|.||.+..++|++++ ++++++.+...... .
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~--~-------------- 303 (430)
T 2x5f_A 240 FYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKG--L-------------- 303 (430)
T ss_dssp BCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHH--H--------------
T ss_pred cCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhh--h--------------
Confidence 11 1111 1211 234 68899999999832223799999 87777665432110 0
Q ss_pred ccccccccccCCCCCccchhhHHHHHHHHH----HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCC
Q 037063 392 ETLDESSQSKFPESSISGVSSKLVECKGLD----HADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPK 467 (588)
Q Consensus 392 ~~~~~~~f~e~GT~~~~~~~~~~al~~aL~----~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~ 467 (588)
. +. ...+.+.... +++..+|+ +.+. ++++.++.+.+++++.+.|.+.... .+++++.+
T Consensus 304 -~----~~-~~~~~~~~~~---~a~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~------~g~~~~~~- 365 (430)
T 2x5f_A 304 -I----RS-NISSGPLPTQ---SAVKHVLKNNKQFDKE--IEQNIQTLKERYEVTKEVVYADQYH------SHWQAYDF- 365 (430)
T ss_dssp -H----HT-TTSSCCHHHH---HHHHHHHHSCHHHHHH--HHHHHHHHHHHHHHHHHHHTCGGGT------TTEEECCC-
T ss_pred -h----hc-ccCCCChHHH---HHHHHHHccChHHHHH--HHHHHHHHHHHHHHHHHHHHhhCCC------CCceeeCC-
Confidence 0 00 1112232222 34455665 3333 4568888888999999998832000 14666654
Q ss_pred CCCCccc-EEEEEeecCCCCCcCHHHHHHHHHh-CCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe
Q 037063 468 VMFDRGP-SLAFNVFDWNGTRIDPALVQKLADR-HNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA 545 (588)
Q Consensus 468 ~~~~rg~-iv~f~~~~~~g~~i~~~~v~~~l~~-~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS 545 (588)
.++ ++.+.+.+ ++...+.+.|.+ +||.+++| . .+ ++|+|
T Consensus 366 ----~~g~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g--~--------------------------~~--~iRis 406 (430)
T 2x5f_A 366 ----NSGYFMAIKVHD-----VDPEALRKHLIDKYSIGVIAL--N--------------------------AT--DIRIA 406 (430)
T ss_dssp ----CBSSEEEEEESS-----SCHHHHHHHHHHHHCEECEEC--S--------------------------SS--EEEEE
T ss_pred ----CceEEEEeCCCC-----CCHHHHHHHHHHhCCEEEecC--C--------------------------CC--eEEEE
Confidence 244 46666652 456666666655 89999876 1 22 89999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhh
Q 037063 546 LGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 546 lg~~~t~eDv~~li~~l~~~l~~ 568 (588)
++. ++.||++++++.|++++++
T Consensus 407 ~~~-~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 407 FSC-VEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp GGG-SCGGGHHHHHHHHHHHHHH
T ss_pred Eec-CCHHHHHHHHHHHHHHHHh
Confidence 995 5899999999999998764
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=209.41 Aligned_cols=306 Identities=13% Similarity=0.090 Sum_probs=200.7
Q ss_pred HHHHHHHHHHhC--------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHH-hcCCEE
Q 037063 182 SKIRKRIMDFMN--------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSK-KRGARV 251 (588)
Q Consensus 182 ~~~r~~ia~~lg--------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~-~~G~~v 251 (588)
.++|+.|+++++ ++++ .|+||+|+|+|+.+++.++ .++||+|++. ..|++ .. ..++ ..|+++
T Consensus 89 ~~l~~~la~~~~~~~~~~~~~~~~--~v~~~~gg~~a~~~~~~~l-~~~gd~vl~~~p~~~~-~~----~~~~~~~g~~~ 160 (435)
T 3piu_A 89 PAFKKAMVDFMAEIRGNKVTFDPN--HLVLTAGATSANETFIFCL-ADPGEAVLIPTPYYPG-FD----RDLKWRTGVEI 160 (435)
T ss_dssp HHHHHHHHHHHHHHTTTSSCCCGG--GEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCTT-HH----HHTTTTTCCEE
T ss_pred HHHHHHHHHHHHHhhCCCCCCCHH--HEEEcCChHHHHHHHHHHh-cCCCCeEEECCCcccc-HH----HHHHHhcCCEE
Confidence 477888888877 5554 4999999999999999999 8999997654 44443 32 2234 579999
Q ss_pred EEEeccCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcCC--
Q 037063 252 SSAEFAWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALGS-- 324 (588)
Q Consensus 252 ~~v~~~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~~-- 324 (588)
+.++++.. ...+|+++|+++|++. .....++++|++++++|+||..+|.++ | ++|+++|+++|+|+++...
T Consensus 161 ~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~ 238 (435)
T 3piu_A 161 VPIHCTSSNGFQITETALEEAYQEA--EKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAF 238 (435)
T ss_dssp EEEECCGGGTSCCCHHHHHHHHHHH--HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCC
T ss_pred EEeeCCCccCCcCCHHHHHHHHHHH--HhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecccccccc
Confidence 99998732 2458999999999721 112247899999999999999999855 5 7799999999999997652
Q ss_pred --CCCCCC-CC-CC---------CCCcEEEeccCccCCCCCCceEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccc
Q 037063 325 --KDMDTL-GL-SL---------FKPDFLICSFYKIFGENPSGFGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIE 390 (588)
Q Consensus 325 --~d~~~l-~l-~~---------~~~D~vv~S~~K~~G~~P~G~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~ 390 (588)
.....+ .+ .. ...++++.|++|.||.++.++|++++++ .+.+.+......
T Consensus 239 ~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~---------------- 302 (435)
T 3piu_A 239 SSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF---------------- 302 (435)
T ss_dssp SSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGG----------------
T ss_pred CCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhhc----------------
Confidence 100000 00 00 1123889999999984334589999955 444433211100
Q ss_pred cccccccccccCCCCCccchhhHHHHHHHHH---HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCC
Q 037063 391 LETLDESSQSKFPESSISGVSSKLVECKGLD---HADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPK 467 (588)
Q Consensus 391 ~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~---~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~ 467 (588)
++.+.... +++...++ ++++ .+++..++++++++++.+.|.++ +++++.+
T Consensus 303 ------------~~~~~~~~---~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~- 355 (435)
T 3piu_A 303 ------------GLVSSQTQ---HLLSAMLSDKKLTKN-YIAENHKRLKQRQKKLVSGLQKS----------GISCLNG- 355 (435)
T ss_dssp ------------SCCCHHHH---HHHHHHHHCHHHHHH-HHHHHHHHHHHHHHHHHHHHHTT----------TCEECCC-
T ss_pred ------------CCCCHHHH---HHHHHHhcChHHHHH-HHHHHHHHHHHHHHHHHHHHHhc----------CCcccCC-
Confidence 01111111 22333333 2222 24667788888899999999874 3555543
Q ss_pred CCCCcccEEEEEeecCCCCC-c-CHHHH-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEE
Q 037063 468 VMFDRGPSLAFNVFDWNGTR-I-DPALV-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTA 544 (588)
Q Consensus 468 ~~~~rg~iv~f~~~~~~g~~-i-~~~~v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRv 544 (588)
..+.++.+.+.+..... . +...+ .++++++||.+++|..|.+ .+.+++|+
T Consensus 356 ---~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~------------------------~~~~~iRi 408 (435)
T 3piu_A 356 ---NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHC------------------------TEPGWFRV 408 (435)
T ss_dssp ---CSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC------------------------SSTTEEEE
T ss_pred ---CeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCC------------------------CCCCEEEE
Confidence 22456666665421000 0 12334 4555666999998866531 12239999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 545 ALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 545 Slg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+++.. +.|||+++++.|++++++
T Consensus 409 ~~~~~-~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 409 CFANL-PERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp ECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred EeeCC-CHHHHHHHHHHHHHHHHH
Confidence 99876 999999999999998865
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=209.72 Aligned_cols=304 Identities=13% Similarity=0.083 Sum_probs=199.2
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHH--HHHHhCCCC--C---------CCeEEEcCCCchhHHHHHHHHHHhcC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFK--LLAESYPFY--S---------NPRLLTVYDHENEAAALMIESSKKRG 248 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~--lv~~s~~~~--~---------gd~ll~~~e~~s~~~~~~~~~a~~~G 248 (588)
.++|+.|++++++++++ |++|+|+++++. +++.++ .. + ||+|++....+... ...++..|
T Consensus 73 ~~lr~~ia~~~~~~~~~--i~~t~G~~~al~~~~~~~~l-~~~~~g~~~~~~~~gd~Vlv~~p~y~~~----~~~~~~~g 145 (423)
T 3ez1_A 73 PSARALFAGYLDVKAEN--VLVWNNSSLELQGLVLTFAL-LHGVRGSTGPWLSQTPKMIVTVPGYDRH----FLLLQTLG 145 (423)
T ss_dssp HHHHHHHHHHTTSCGGG--EEECSSCHHHHHHHHHHHHH-HTCCTTCSSCGGGGCCEEEEEESCCHHH----HHHHHHHT
T ss_pred HHHHHHHHHHhCCChhh--EEEeCCcHHHHHHHHHHHHH-hccCCCccccccCCCCEEEEcCCCcHHH----HHHHHHcC
Confidence 58999999999998765 999999999998 888887 55 6 58876544433212 34456679
Q ss_pred CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEE-EeCCCCCCCccCCHHH---H-HHH-HHcCcEEEEeCCCc
Q 037063 249 ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFV-FPLQSKVTGARYSYMW---M-SVA-AEKGWHVLLDATAL 322 (588)
Q Consensus 249 ~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~-~~~~sn~tG~~~pl~~---I-~~a-~~~g~~vvvDaa~~ 322 (588)
++++.++.+ +++ +|+++|++++.+ .+++++|+ .++++|+||..+|.++ | ++| +++|+++|+|+++.
T Consensus 146 ~~~~~v~~~-~~g-~d~~~l~~~l~~------~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~ 217 (423)
T 3ez1_A 146 FELLTVDMQ-SDG-PDVDAVERLAGT------DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYR 217 (423)
T ss_dssp CEEEEEEEE-TTE-ECHHHHHHHHHS------CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTS
T ss_pred CEEEeccCC-CCC-CCHHHHHHHHhh------CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcc
Confidence 999999997 444 999999999941 16788886 5689999999999984 5 667 89999999999976
Q ss_pred CC-C---CCCC----CCC----CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccc
Q 037063 323 GS-K---DMDT----LGL----SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIE 390 (588)
Q Consensus 323 ~~-~---d~~~----l~l----~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~ 390 (588)
.. . .... +.+ .....++++.|++|.++ ++.++|++++++++++.+.......
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~~--------------- 281 (423)
T 3ez1_A 218 VHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITF-AGAGLGFVASSEDNIRWLSKYLGAQ--------------- 281 (423)
T ss_dssp SCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSC-SSSSCEEEEECHHHHHHHHHHHHHS---------------
T ss_pred hhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhcc-CCcceEEEEeCHHHHHHHHHHHhhh---------------
Confidence 31 1 0000 000 12236799999999643 2678999999988877664322110
Q ss_pred cccccccccccCCCCCccchhhHHHHHHHHHH----HHHhCHHHHH----HHHHHHHHHHHHHHHcccCCCCCCCCC-eE
Q 037063 391 LETLDESSQSKFPESSISGVSSKLVECKGLDH----ADALGLILIS----NRARYLINWLANALMNLHHPHSETGIP-LV 461 (588)
Q Consensus 391 ~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~----l~~~G~~~i~----~r~~~L~~~l~~~L~~L~h~~~~~g~~-~v 461 (588)
..++..+.+ .++..+++. +.+. +++.. ++...+.+.|.+.|.++ + .+
T Consensus 282 ----------~~~~~~~~~----~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~---------~~~~ 337 (423)
T 3ez1_A 282 ----------SIGPNKVEQ----ARHVKFLTEYPGGLEGL-MRDHAAIIAPKFRAVDEVLRAELGEG---------GEYA 337 (423)
T ss_dssp ----------CSCCCHHHH----HHHHHHHHHSTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTT---------TSSE
T ss_pred ----------ccCCCHHHH----HHHHHHHHhccchHHHH-HHHHHHHHHHHHHHHHHHHHHhcCcC---------CCce
Confidence 001111111 122223322 0110 22333 33334444444444432 3 46
Q ss_pred EEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEecc-ccccCcccccchHHHHHHHHhhhcCCCCCcCCcc
Q 037063 462 RIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSC-GFLQNIFFSGEYEQERVRVLETRSGTNETRSGVS 540 (588)
Q Consensus 462 ~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~-G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~ 540 (588)
++..| ..+.++.+.+.+ .+.+.+.++|.++||.+++ |.+|..+. ..+.+
T Consensus 338 ~~~~p----~~g~~~~~~~~~-----~~~~~~~~~l~~~gv~v~~~g~~~~~~~---------------------~~~~~ 387 (423)
T 3ez1_A 338 TWTLP----KGGYFISLDTAE-----PVADRVVKLAEAAGVSLTPAGATYPAGQ---------------------DPHNR 387 (423)
T ss_dssp EECCC----SBSSCEEEEESS-----SCHHHHHHHHHHTTEECCCTTTTSSTTC---------------------CSSSC
T ss_pred EEeCC----CccEEEEEECCC-----CcHHHHHHHHHHCCcEEecCcccccCCC---------------------CCCCC
Confidence 66654 235566677754 2467788889999999998 55542110 01223
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhhhhhhc
Q 037063 541 VVTAALGCLTNFEDTYRLWAFVSRFLDADFV 571 (588)
Q Consensus 541 ~vRvSlg~~~t~eDv~~li~~l~~~l~~~~~ 571 (588)
+||+|++.. +.+||+++++.|++++++.-.
T Consensus 388 ~iRis~~~~-~~~~i~~~~~~l~~~l~~~~~ 417 (423)
T 3ez1_A 388 NLRLAPTRP-PVEEVRTAMQVVAACIRLATE 417 (423)
T ss_dssp EEEECCSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 999999876 999999999999998876543
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-20 Score=201.89 Aligned_cols=318 Identities=15% Similarity=0.095 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
....++|+.|+++++++ .|++|+|+|+|+.+++.++. +||+|+ ....|++ .. ..++..|++++.++++
T Consensus 52 ~~~~~l~~~la~~~~~~----~v~~~~ggt~al~~~l~~l~--~gd~Vlv~~~~~~~-~~----~~~~~~G~~~~~v~~~ 120 (424)
T 2po3_A 52 PLVREFEERVAGLAGVR----HAVATCNATAGLQLLAHAAG--LTGEVIMPSMTFAA-TP----HALRWIGLTPVFADID 120 (424)
T ss_dssp HHHHHHHHHHHHHHTSS----EEEEESCHHHHHHHHHHHHT--CCSEEEEESSSCTH-HH----HHHHHTTCEEEEECBC
T ss_pred HHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcC--CCCEEEECCCccHH-HH----HHHHHcCCEEEEEecC
Confidence 45679999999999983 49999999999999999973 688866 4556664 22 3456689999999998
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC--CCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK--DMDTLGLSL 334 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~--d~~~l~l~~ 334 (588)
..++.+|+++|+++++ +++++|++++ +||...++++| ++|+++|+++|+|+++..+. +...++ .
T Consensus 121 ~~~~~~d~~~l~~~i~--------~~~~~v~~~~---~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~--~ 187 (424)
T 2po3_A 121 PDTGNLDPDQVAAAVT--------PRTSAVVGVH---LWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAG--S 187 (424)
T ss_dssp TTTSSBCHHHHGGGCC--------TTEEEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETT--S
T ss_pred CCcCCcCHHHHHHhhC--------cCCcEEEEEC---CCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecc--c
Confidence 4467899999998887 6789988854 79999999999 99999999999999988642 112222 1
Q ss_pred CCCcEEEeccC--ccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC-CCccch
Q 037063 335 FKPDFLICSFY--KIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE-SSISGV 410 (588)
Q Consensus 335 ~~~D~vv~S~~--K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT-~~~~~~ 410 (588)
+ +|+++.|++ |.++ |.++|+++.+ +++++.+.+....+ +... + .+...|+ ..+..+
T Consensus 188 ~-~di~~~S~sk~K~l~--~~~~G~~v~~~~~l~~~l~~~~~~~-~~~~----------~------~~~~~g~~~~~~~~ 247 (424)
T 2po3_A 188 L-GDAEVFSFHATKAVN--AFEGGAVVTDDADLAARIRALHNFG-FDLP----------G------GSPAGGTNAKMSEA 247 (424)
T ss_dssp S-SSEEEEECCTTSSSC--CSSCEEEEESCHHHHHHHHHHHBTT-TTCT----------T------CCTTCCCBCCCCHH
T ss_pred c-cCEEEEeCCCCCCcc--CCCCeEEEeCCHHHHHHHHHHHhcC-cccc----------c------cccccCcCCCcCHH
Confidence 1 589999998 6666 5567888888 56766665432211 1000 0 0001121 122222
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc-ccEEEEEeecCCCCCcC
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR-GPSLAFNVFDWNGTRID 489 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r-g~iv~f~~~~~~g~~i~ 489 (588)
+...++..+.. ++.+.++.+.+++++.+.|.++ ++++++.+...... ..++.+.+.+.. ..++
T Consensus 248 ----~aa~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~---------~g~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 311 (424)
T 2po3_A 248 ----AAAMGLTSLDA--FPEVIDRNRRNHAAYREHLADL---------PGVLVADHDRHGLNNHQYVIVEIDEAT-TGIH 311 (424)
T ss_dssp ----HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCSC---------TTEEECCGGGGSCCCCCCEEEEECHHH-HSSC
T ss_pred ----HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccC---------CCccccCCCCCCccccEEEEEEECCcc-chhh
Confidence 22234433333 5778888899999999998874 56887762211111 246667665200 0145
Q ss_pred HHHHHHHHHhCCcEeccccccCcccc--cchH------HHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHH
Q 037063 490 PALVQKLADRHNISLSCGFLQNIFFS--GEYE------QERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAF 561 (588)
Q Consensus 490 ~~~v~~~l~~~gI~v~~G~~c~~~~~--~~~~------~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~ 561 (588)
...+.+.|.++||.++.. |.+... ..+. ......+.. ..||++++.+++.+||+++++.
T Consensus 312 ~~~l~~~L~~~gI~v~~~--~~~~~~~~~~~~~~g~~~~~~~~r~~~-----------~~l~l~~~~~~t~e~i~~~~~~ 378 (424)
T 2po3_A 312 RDLVMEVLKAEGVHTRAY--FSPGCHELEPYRGQPHAPLPHTERLAA-----------RVLSLPTGTAIGDDDIRRVADL 378 (424)
T ss_dssp HHHHHHHHHHTTEECBCT--TCSCGGGSTTTTTSCCCCCHHHHHHHT-----------TEEEECCSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCceecc--cCCccccchhhhhcCCCCChhHHHHhc-----------CEEEeeCCCCCCHHHHHHHHHH
Confidence 778888889999999863 321100 0000 000000111 1599999999999999999999
Q ss_pred HHHhhhhh
Q 037063 562 VSRFLDAD 569 (588)
Q Consensus 562 l~~~l~~~ 569 (588)
|+++++..
T Consensus 379 L~~~~~~~ 386 (424)
T 2po3_A 379 LRLCATRG 386 (424)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99987653
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.89 E-value=8e-22 Score=211.29 Aligned_cols=304 Identities=12% Similarity=0.080 Sum_probs=198.0
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHH--HHHHHhCCCC--C----------CCeEEEcCCCchhHHHHHHHHHHhc
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAF--KLLAESYPFY--S----------NPRLLTVYDHENEAAALMIESSKKR 247 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al--~lv~~s~~~~--~----------gd~ll~~~e~~s~~~~~~~~~a~~~ 247 (588)
.++|+.|++++++++++ |++|+|+++++ ++++.++ .. + ||+|++....+... ...++..
T Consensus 81 ~~lr~~ia~~~~~~~~~--i~~t~G~~~al~~~~~~~~l-~~~~~g~~~~~~~~~gd~V~v~~p~y~~~----~~~~~~~ 153 (427)
T 3ppl_A 81 VDIRQIWADLLGVPVEQ--VLAGDASSLNIMFDVISWSY-IFGNNDSVQPWSKEETVKWICPVPGYDRH----FSITERF 153 (427)
T ss_dssp HHHHHHHHHHHTSCGGG--EEECSSCHHHHHHHHHHHHH-HHCCTTCSSCGGGSSCCEEEEEESCCHHH----HHHHHHT
T ss_pred HHHHHHHHHHhCCCcce--EEEeCCcHHHHHHHHHHHHH-hccCCcccccccCCCCCEEEEcCCCcHHH----HHHHHHc
Confidence 58999999999998765 99999999999 5888876 44 5 88976554433312 3456778
Q ss_pred CCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEE-eCCCCCCCccCCHH---HH-HHH-HHcCcEEEEeCCC
Q 037063 248 GARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVF-PLQSKVTGARYSYM---WM-SVA-AEKGWHVLLDATA 321 (588)
Q Consensus 248 G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~-~~~sn~tG~~~pl~---~I-~~a-~~~g~~vvvDaa~ 321 (588)
|++++.+|++ +++ +|+++|++++.. +++++|++ ++++|+||..+|.+ +| ++| +++|++||+|+++
T Consensus 154 g~~~~~v~~~-~~g-~d~~~l~~~l~~-------~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y 224 (427)
T 3ppl_A 154 GFEMISVPMN-EDG-PDMDAVEELVKN-------PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAY 224 (427)
T ss_dssp TCEEEEEEEE-TTE-ECHHHHHHHTTS-------TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTT
T ss_pred CCEEEEeCCC-CCC-CCHHHHHHHHhc-------CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCC
Confidence 9999999998 555 999999999851 57888875 58999999999999 55 677 8999999999986
Q ss_pred cCC-C---CCCCCCC-------CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccc
Q 037063 322 LGS-K---DMDTLGL-------SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIE 390 (588)
Q Consensus 322 ~~~-~---d~~~l~l-------~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~ 390 (588)
... . ....+.+ .....++++.|++|.++ ++.++|+++.++++++.+.......
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~G~r~G~~~~~~~l~~~~~~~~~~~--------------- 288 (427)
T 3ppl_A 225 AVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITL-AGAGVSFFLTSAENRKWYTGHAGIR--------------- 288 (427)
T ss_dssp TTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSC-TTSSCEEEECCHHHHHHHHHHHHHH---------------
T ss_pred cccccCCCCCCccchhhhhhccCCCCcEEEEechhhccC-cCccEEEEEcCHHHHHHHHHHhhcc---------------
Confidence 531 1 0111111 12336799999999844 3578999999888776654322100
Q ss_pred cccccccccccCCCCCccchhhHHHHHHHHHH---HHHhCHHHHHHHH----HHHHHHHHHHHHcccCCCCCCCCCeEEE
Q 037063 391 LETLDESSQSKFPESSISGVSSKLVECKGLDH---ADALGLILISNRA----RYLINWLANALMNLHHPHSETGIPLVRI 463 (588)
Q Consensus 391 ~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~---l~~~G~~~i~~r~----~~L~~~l~~~L~~L~h~~~~~g~~~v~i 463 (588)
..++..+.+ .++..+++. +.+. +.+..++. ..+.+.|.+.|..+ +++++
T Consensus 289 ----------~~~~~~~~q----~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~l~~~---------~~~~~ 344 (427)
T 3ppl_A 289 ----------GIGPNKVNQ----LAHARYFGDAEGVRAV-MRKHAASLAPKFNKVLEILDSRLAEY---------GVAQW 344 (427)
T ss_dssp ----------CSCCCHHHH----HHHHHHHCSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHGGG---------TCCEE
T ss_pred ----------cCCCCHHHH----HHHHHHHhChhhHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC---------CceEE
Confidence 001111111 122222221 1111 23333333 34444444444432 24555
Q ss_pred eCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEE
Q 037063 464 YGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVT 543 (588)
Q Consensus 464 ~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vR 543 (588)
..| ..+.++.+.+.+ .+...+.+.|.++||.+++|..|-... . ..+.++||
T Consensus 345 ~~p----~~g~~~~~~~~~-----~~~~~~~~~l~~~gv~v~~~g~~~~~~-------------~-------~~~~~~~R 395 (427)
T 3ppl_A 345 TVP----AGGYFISLDVVP-----GTASRVAELAKEAGIALTGAGSSYPLR-------------Q-------DPENKNLR 395 (427)
T ss_dssp CCC----SBSSCEEEECST-----TCHHHHHHHHHHTTEECCCTTTTSGGG-------------C-------CTTSCEEE
T ss_pred eCC----CccEEEEEECCc-----chHHHHHHHHHHCCCEEecCcCcCCCC-------------C-------CCCCCeEE
Confidence 554 235566677654 246778888899999999854442100 0 01223999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhhhhhc
Q 037063 544 AALGCLTNFEDTYRLWAFVSRFLDADFV 571 (588)
Q Consensus 544 vSlg~~~t~eDv~~li~~l~~~l~~~~~ 571 (588)
+|++.. +.+||+++++.|.+++++.-.
T Consensus 396 is~~~~-~~~~i~~~~~~l~~~l~~~~~ 422 (427)
T 3ppl_A 396 LAPSLP-PVEELEVAMDGVATCVLLAAA 422 (427)
T ss_dssp ECCSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 999766 899999999999998876543
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.1e-22 Score=225.73 Aligned_cols=321 Identities=12% Similarity=0.028 Sum_probs=223.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
...+.++++.+++++|++ ..+++++|+|+|+.+++.++ +++||+|+++ ..|.+ .+.. ++..|+++++++.
T Consensus 204 ~g~v~~~ee~la~l~G~d---~~i~~~~Gtt~a~~~~i~al-~~~GD~Vlv~~~~h~s-~~~~----~~~~G~~~v~v~~ 274 (755)
T 2vyc_A 204 TGAFGESEKYAARVFGAD---RSWSVVVGTSGSNRTIMQAC-MTDNDVVVVDRNCHKS-IEQG----LMLTGAKPVYMVP 274 (755)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHHH-CCTTCEEEEESSCCHH-HHHH----HHHHCCEEEEECC
T ss_pred ccHHHHHHHHHHHHhCCC---ceEEECCcHHHHHHHHHHHh-cCCCCEEEECCCchHH-HHHH----HHHcCCEEEEEeC
Confidence 456789999999999995 34888888899999999999 8999997654 55554 3332 3456999999987
Q ss_pred cCCC----Ccc-----CHHHHHHHHhhh-cc-ccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC
Q 037063 257 AWPN----LRI-----HSGKLMKKIVGK-RK-KKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS 324 (588)
Q Consensus 257 ~~~~----~~i-----~~e~l~~~i~~~-~~-~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~ 324 (588)
+..+ +.+ |.++|+++|++. .. .....++++++++++ |++|.++|+++| ++|+++|++|++|+++...
T Consensus 275 ~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~ 353 (755)
T 2vyc_A 275 SRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGY 353 (755)
T ss_dssp CBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTT
T ss_pred CCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchh
Confidence 6321 335 999999999731 00 011234468889886 799999999999 9999999999999998642
Q ss_pred CCCCCC--CCCC-CC--CcE------EEeccCccCCCCCCceEEEEEeCc--chhcccCCCCCCCceEeeecCCCccccc
Q 037063 325 KDMDTL--GLSL-FK--PDF------LICSFYKIFGENPSGFGCLFVKKS--SASVLSGSTSSVSTIMGIEPSFSEIIEL 391 (588)
Q Consensus 325 ~d~~~l--~l~~-~~--~D~------vv~S~~K~~G~~P~G~G~L~v~~~--~~~~l~~~~~g~~g~v~~~~~~~~~~~~ 391 (588)
....+. +.+. .. +|+ ++.|+||+++. |.|.|+++++++ .++.. . +
T Consensus 354 ~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g-~~~g~~i~~~~~~~~i~~~---~------------------~ 411 (755)
T 2vyc_A 354 ARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFS---R------------------F 411 (755)
T ss_dssp GGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSC-CTTCEEEEEECCBTCCCHH---H------------------H
T ss_pred cccCcccCCcchhcCCcCCccCCCeEEEECccccccC-cCCeeeeeecCcccccCHH---H------------------H
Confidence 111110 0000 12 465 99999997763 788999999886 21100 0 0
Q ss_pred ccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCC--CCCCCCCeEEEeCCCCC
Q 037063 392 ETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHP--HSETGIPLVRIYGPKVM 469 (588)
Q Consensus 392 ~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~--~~~~g~~~v~i~~p~~~ 469 (588)
.... ..+ +.+|+++..+ +++..|++++...|.+.+.++...++++++++|.++... .. ..-.+++++|...
T Consensus 412 ~~~~-~~~-~s~sp~~~~i---aal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~--~~~~~~~~~~~~~ 484 (755)
T 2vyc_A 412 NQAY-MMH-ATTSPLYAIC---ASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTAD--GSWFFKPWNKEVV 484 (755)
T ss_dssp HHHH-HHT-SCSSCCHHHH---HHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TCCCCEESSCSEE
T ss_pred HHHH-HHh-CCCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccccccc--ccceeeccCchhc
Confidence 0000 023 5678887765 788889988876645778889999999999999886210 00 0012777776421
Q ss_pred C----------------------------------------C-----cccEEEEEeec--CCC----CCcCHHHHHHHHH
Q 037063 470 F----------------------------------------D-----RGPSLAFNVFD--WNG----TRIDPALVQKLAD 498 (588)
Q Consensus 470 ~----------------------------------------~-----rg~iv~f~~~~--~~g----~~i~~~~v~~~l~ 498 (588)
. . ....++|++.+ .+| ..+++..+.+.|+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~ 564 (755)
T 2vyc_A 485 TDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLG 564 (755)
T ss_dssp ECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHH
T ss_pred cccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHH
Confidence 0 0 11467887763 233 2367789999999
Q ss_pred hCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 499 RHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 499 ~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
++||.+... +...||+++++.+|.+|+++|+++|.++.+
T Consensus 565 ~~gI~~e~~------------------------------~~~~v~~~~~~g~t~~~~~~l~~al~~~~~ 603 (755)
T 2vyc_A 565 RHGIVPTRT------------------------------TDFQIMFLFSMGVTRGKWGTLVNTLCSFKR 603 (755)
T ss_dssp TTTCCCSEE------------------------------CSSEEEEECCTTCCTTTTHHHHHHHHHHHH
T ss_pred HCCCEEeec------------------------------CCCeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 899986431 122899999999999999999999999864
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.1e-22 Score=210.35 Aligned_cols=310 Identities=10% Similarity=0.059 Sum_probs=200.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
..+++.+|+++++++|++++. |++++ +++|+.+++.++ +++||+|++ ...|++....+........+..+..++.
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~--v~~~s-Gs~a~~~a~~~~-~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 150 (420)
T 3gbx_A 75 DVVEQLAIDRAKELFGADYAN--VQPHS-GSQANFAVYTAL-LQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGI 150 (420)
T ss_dssp HHHHHHHHHHHHHHHTCSEEE--CCCSS-HHHHHHHHHHHH-CCTTCEEEEEEEC------------CHHHHSEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCce--eEecC-cHHHHHHHHHHh-cCCCCEEEecchhhcceeccchhhhhcccceeEEeccC
Confidence 456677889999999996432 54555 588999999988 899999664 4445432222211111223455666666
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC---CCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK---DMDTLGL 332 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~---d~~~l~l 332 (588)
+ .++.+|+++|+++++. .++++|++++++| |...|+++| ++|+++|+++|+|+++..+. ......+
T Consensus 151 ~-~~~~~d~~~l~~~i~~-------~~~~~v~~~~~~~--~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~ 220 (420)
T 3gbx_A 151 D-ESGKIDYDEMAKLAKE-------HKPKMIIGGFSAY--SGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPV 220 (420)
T ss_dssp C-TTCSCCHHHHHHHHHH-------HCCSEEEECCTTC--CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCST
T ss_pred C-ccCCcCHHHHHHHHHh-------cCCeEEEEecCcc--CCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCccc
Confidence 6 6778999999999982 2589999987665 568999999 99999999999999976531 1111112
Q ss_pred CCCCCcEEEeccCccCCCCCCceEEEEEeC---cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 333 SLFKPDFLICSFYKIFGENPSGFGCLFVKK---SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 333 ~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~---~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
. .+|+++.|+||.++ +|.| |+++.++ ++.+.+......+ ..|+++...
T Consensus 221 ~--~~di~~~s~sK~~~-g~~g-g~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~ 271 (420)
T 3gbx_A 221 P--HAHVVTTTTHKTLA-GPRG-GLILAKGGDEELYKKLNSAVFPS-------------------------AQGGPLMHV 271 (420)
T ss_dssp T--TSSEEEEESSGGGC-SCSC-EEEEESSCCHHHHHHHHHHHC-----------------------------CCCCHHH
T ss_pred c--cCCEEEeecccCCC-CCCc-eEEEEcCCcHHHHHHhhhhcCCC-------------------------CCCCcchhH
Confidence 2 28999999999885 2776 9999888 5544443222110 112233332
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcC
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRID 489 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~ 489 (588)
+ +++..++..+...+++.+.++...+++++.+.|.++ +++++.+. ..+.++.+.+.+.. ++
T Consensus 272 ~---~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~---~~~~~~~~~~~~~~---~~ 332 (420)
T 3gbx_A 272 I---AGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR----------GYKVVSGG---TENHLFLLDLVDKN---LT 332 (420)
T ss_dssp H---HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT----------TCEEGGGS---CSSSEEEEECGGGT---CC
T ss_pred H---HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc----------CCeeccCC---CCCeEEEEEcCCCC---CC
Confidence 2 344445544322246788899999999999999874 35555431 24566666665321 45
Q ss_pred HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC----CHHHHHHHHHHHHHh
Q 037063 490 PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT----NFEDTYRLWAFVSRF 565 (588)
Q Consensus 490 ~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~----t~eDv~~li~~l~~~ 565 (588)
...+.++|.++||.++.+..-. .. ....+...||+++...+ +.+||+++++.|++.
T Consensus 333 ~~~~~~~l~~~gi~v~~~~~~~--~~------------------~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~ 392 (420)
T 3gbx_A 333 GKEADAALGRANITVNKNSVPN--DP------------------KSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDV 392 (420)
T ss_dssp HHHHHHHHHHTTEECEEECCTT--CS------------------SCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEeccccCCC--Cc------------------cccCCCcceEEecchhcccCCCHHHHHHHHHHHHHH
Confidence 7788888999999988731100 00 00122236999987654 489999999999998
Q ss_pred hhhh
Q 037063 566 LDAD 569 (588)
Q Consensus 566 l~~~ 569 (588)
+++.
T Consensus 393 l~~~ 396 (420)
T 3gbx_A 393 LDNI 396 (420)
T ss_dssp HHTT
T ss_pred HhCc
Confidence 8663
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.7e-22 Score=209.39 Aligned_cols=309 Identities=11% Similarity=0.040 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHh------CCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-----eEEEc-CCCchhHHHHHHHH--HHh
Q 037063 181 ESKIRKRIMDFM------NISEDDYTLVFTANQSSAFKLLAESYPFYSNP-----RLLTV-YDHENEAAALMIES--SKK 246 (588)
Q Consensus 181 ~~~~r~~ia~~l------ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-----~ll~~-~e~~s~~~~~~~~~--a~~ 246 (588)
..++|+.|++++ +++++ .|+||+|+|+|+++++.++ .++|| +|++. ...+.......... ...
T Consensus 77 ~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~t~al~~~~~~l-~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~ 153 (417)
T 3g7q_A 77 KTALLNALAVLLRETLGWDIEPQ--NIALTNGSQSAFFYLFNLF-AGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVS 153 (417)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCGG--GEEEESCHHHHHHHHHHHH-SBC----CCBEEEESSCCCHHHHHC-----CCEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCcc--cEEEeCCcHHHHHHHHHHH-cCCCccCCcceEEEeCCCccccchhhccchhhhcc
Confidence 347788888876 45555 4999999999999999999 78877 76653 33332122111100 012
Q ss_pred cCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCc
Q 037063 247 RGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATAL 322 (588)
Q Consensus 247 ~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~ 322 (588)
.+..+..++.+..+..+|.++|+ +. +++++|++++++|+||..+| +++| ++|+++|+++|+|+++.
T Consensus 154 ~~~~~~~~~~~~~~~~~d~~~l~--~~--------~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~ 223 (417)
T 3g7q_A 154 ARPNIELLPEGQFKYHVDFEHLH--IG--------EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYG 223 (417)
T ss_dssp CCCEEEEEGGGEEEEECCGGGCC--CC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred ccCcccccCCcccccccCHHHhc--cc--------cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCc
Confidence 23445444432113457888887 55 68999999999999999999 6667 88999999999999976
Q ss_pred CCC---CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccccccc
Q 037063 323 GSK---DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQ 399 (588)
Q Consensus 323 ~~~---d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f 399 (588)
.+. ............++++.|++|+ +.+..++|+++.++++++.+.......
T Consensus 224 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~~~~~------------------------ 278 (417)
T 3g7q_A 224 VPFPGIIFSEARPLWNPNIILCMSLSKL-GLPGSRCGIIIANDKTITAIANMNGII------------------------ 278 (417)
T ss_dssp TTTTCCBCSCCCCCCCTTEEEEEESGGG-TCTTSCCEEEECCHHHHHHHHHHHHHH------------------------
T ss_pred cccccccccccccCCCCCEEEEEechhc-cCCCcceEEEEeCHHHHHHHHHhhcce------------------------
Confidence 431 1111111223478999999994 533456999998888777664322110
Q ss_pred ccCCCCCccchhhHHHHHHHHHHHHHhCHH----H-HHHHHHHHHHHHHHHHHcccCCCCCCCCC--eEEEeCCCCCCCc
Q 037063 400 SKFPESSISGVSSKLVECKGLDHADALGLI----L-ISNRARYLINWLANALMNLHHPHSETGIP--LVRIYGPKVMFDR 472 (588)
Q Consensus 400 ~e~GT~~~~~~~~~~al~~aL~~l~~~G~~----~-i~~r~~~L~~~l~~~L~~L~h~~~~~g~~--~v~i~~p~~~~~r 472 (588)
.. +.+..+. + .+...++...+. + +.++.++..+.+.+.|.+. .+ +++++.| ..
T Consensus 279 -~~-~~~~~~~---~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------l~~~~~~~~~~----~~ 338 (417)
T 3g7q_A 279 -SL-APGGMGP---A---MMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRY--------LSEERCLIHKP----EG 338 (417)
T ss_dssp -CC-CCCSHHH---H---HHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHH--------CCTTTCEEECC----CB
T ss_pred -ee-CCCcHHH---H---HHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHh--------cccCCceeeCC----Cc
Confidence 00 1111111 2 222333332222 2 4555666777777777662 12 3566654 23
Q ss_pred ccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCH
Q 037063 473 GPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNF 552 (588)
Q Consensus 473 g~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~ 552 (588)
+.++.+.+... .++...+.+.|.++||.+++|..|.++....+ ..+.++||+|++. +.
T Consensus 339 g~~~~~~~~~~---~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~-----------------~~~~~~iRis~~~--~~ 396 (417)
T 3g7q_A 339 AIFLWLWFKDL---PITTELLYQRLKARGVLMVPGHYFFPGLDKPW-----------------PHTHQCMRMNYVP--EP 396 (417)
T ss_dssp SSEEEEECTTC---SSCHHHHHHHHHHTTEECEEGGGGCTTBSSCC-----------------GGGGGEEEEESCS--CH
T ss_pred ceEEEEEcCCC---CCCHHHHHHHHHHCCEEEECchhhCCCCcccc-----------------ccCCCeEEEEecC--CH
Confidence 45555565431 15677888888899999999987753211100 0012399999985 99
Q ss_pred HHHHHHHHHHHHhhhhh
Q 037063 553 EDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 553 eDv~~li~~l~~~l~~~ 569 (588)
|||+++++.|++++++.
T Consensus 397 ~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 397 DKIEAGVKILAEEIERA 413 (417)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988754
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.4e-22 Score=212.33 Aligned_cols=305 Identities=9% Similarity=0.031 Sum_probs=201.7
Q ss_pred HHHHHHHHHh----CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 183 KIRKRIMDFM----NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 183 ~~r~~ia~~l----ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++|+.|++++ |.+.+..+|++|+|+++|+.+++.++ +++||+|++ ...|+. . ...++..|++++.++++
T Consensus 99 ~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~-~----~~~~~~~g~~~~~v~~~ 172 (447)
T 3b46_A 99 SLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGL-LNAGDEVIVFEPFFDQ-Y----IPNIELCGGKVVYVPIN 172 (447)
T ss_dssp HHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT-H----HHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHH-cCCCCEEEEeCCCchh-H----HHHHHHcCCEEEEEeCC
Confidence 5666666665 54333235999999999999999999 899999664 444543 2 23456789999999986
Q ss_pred CC-----------CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCc
Q 037063 258 WP-----------NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATAL 322 (588)
Q Consensus 258 ~~-----------~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~ 322 (588)
.. ++.+|+++|+++|+ +++++|++++++|+||.++| +++| ++|+++|+++|+|+++.
T Consensus 173 ~~~~~~~~~~~~~~~~~d~~~l~~~l~--------~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~ 244 (447)
T 3b46_A 173 PPKELDQRNTRGEEWTIDFEQFEKAIT--------SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYE 244 (447)
T ss_dssp CCGGGGTSCBCSTTSEECHHHHHTTCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred CccccccccccccCcccCHHHHHHhhc--------cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccch
Confidence 33 35789999998887 68999999999999999987 5556 88999999999999965
Q ss_pred CCC------CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEE-eCcchhcccCCCCCCCceEeeecCCCccccccccc
Q 037063 323 GSK------DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFV-KKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLD 395 (588)
Q Consensus 323 ~~~------d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v-~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~ 395 (588)
... .+..++......|+++.|++|.||.+...+|++++ ++++++.+......
T Consensus 245 ~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~--------------------- 303 (447)
T 3b46_A 245 HLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTR--------------------- 303 (447)
T ss_dssp TCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHH---------------------
T ss_pred hcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCHHHHHHHHHHHhh---------------------
Confidence 421 11112001234799999999999832223999999 77777655432100
Q ss_pred ccccccCCCCCccchhhHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 396 ESSQSKFPESSISGVSSKLVECKGLDHADALG-LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 396 ~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G-~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
...+.+... .+++..+|+.....+ ++++.++.+.+++++.+.|.++ | ++++.| ..+.
T Consensus 304 -----~~~~~~~~~---~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g---~~~~~~----~~g~ 361 (447)
T 3b46_A 304 -----ICFASPSPL---QEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL-------G---LPYTAP----EGTY 361 (447)
T ss_dssp -----HTSSCCHHH---HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-------T---CCEECC----SBSS
T ss_pred -----ccCCCChHH---HHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC-------C---CeecCC----CeeE
Confidence 001112111 134456676542222 6778889999999999999885 2 334443 2244
Q ss_pred EEEEEeecCC---C--------CCcCHHHHH-HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEE
Q 037063 475 SLAFNVFDWN---G--------TRIDPALVQ-KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVV 542 (588)
Q Consensus 475 iv~f~~~~~~---g--------~~i~~~~v~-~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~v 542 (588)
++.+.+.... + ...+...+. ++++++||.+.+|..+..... . ..+.++|
T Consensus 362 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~------------~-------~~~~~~i 422 (447)
T 3b46_A 362 FVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEH------------E-------KAAENLL 422 (447)
T ss_dssp EEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGG------------G-------GGGTTEE
T ss_pred EEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCc------------c-------CCCCCEE
Confidence 5555654310 0 012333454 455679999988854421100 0 0112389
Q ss_pred EEecCCCCCHHHHHHHHHHHHHh
Q 037063 543 TAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 543 RvSlg~~~t~eDv~~li~~l~~~ 565 (588)
|+|++. +.|+|+++++.|+++
T Consensus 423 Rls~~~--~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 423 RFAVCK--DDAYLENAVERLKLL 443 (447)
T ss_dssp EEECCS--CHHHHHHHHHHGGGG
T ss_pred EEEEeC--CHHHHHHHHHHHHHH
Confidence 999874 899999999998874
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-20 Score=202.62 Aligned_cols=343 Identities=10% Similarity=0.009 Sum_probs=222.5
Q ss_pred CCeeeecCCCCC------CCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGHG------LFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~g------l~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|||+++.. +.++.+++++.+.+... ..++. . . | ..+...+
T Consensus 41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~-~~~~~-----------------------~-~--~---~~~~~~~ 90 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAM-SHVMF-----------------------G-G--I---THAPAIE 90 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHC-SCCCC-----------------------S-S--E---ECHHHHH
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhc-ccccc-----------------------c-c--c---CCHHHHH
Confidence 567899986553 35788899887665321 11110 0 0 0 1244568
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--CC----CCCeEEE-cCCCchhHHHHHHHHHH-----h--c--
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--FY----SNPRLLT-VYDHENEAAALMIESSK-----K--R-- 247 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--~~----~gd~ll~-~~e~~s~~~~~~~~~a~-----~--~-- 247 (588)
+++++++++++++++ |+||+|+|+|+++++.++. .+ +|++|++ ...||......+ .... + .
T Consensus 91 l~~~la~~~~~~~~~--v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~-~~~~~~~~~~~~~~~ 167 (429)
T 1s0a_A 91 LCRKLVAMTPQPLEC--VFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAM-SVCDPDNSMHSLWKG 167 (429)
T ss_dssp HHHHHHHHSCTTCCE--EEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHH-TTSCTTTTTGGGGTT
T ss_pred HHHHHHHhCCCCCCE--EEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhh-hhcCCchhhcccccC
Confidence 888999999986654 9999999999999987641 12 5888664 445664232221 1100 0 0
Q ss_pred -CCEEEEEeccC-----CCCccCHHHHHHHHhhhccccCCCcceEEEEeCC-CCCCCccCC----HHHH-HHHHHcCcEE
Q 037063 248 -GARVSSAEFAW-----PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQ-SKVTGARYS----YMWM-SVAAEKGWHV 315 (588)
Q Consensus 248 -G~~v~~v~~~~-----~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~-sn~tG~~~p----l~~I-~~a~~~g~~v 315 (588)
...+..++++. ..+.+|+++|+++|++ . .+++++|++..+ +|+||.+.| +++| ++|+++|+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~----~-~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~l 242 (429)
T 1s0a_A 168 YLPENLFAPAPQSRMDGEWDERDMVGFARLMAA----H-RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILL 242 (429)
T ss_dssp TSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHH----H-TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEE
T ss_pred CCCCceEeCCCcccccccchHHHHHHHHHHHHh----C-CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 11345555531 1235889999999872 0 136788888888 899999888 9999 9999999999
Q ss_pred EEeCCCc-CCCC--CCCCCCCCCCCcEEEeccCccCCCCC-CceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccc
Q 037063 316 LLDATAL-GSKD--MDTLGLSLFKPDFLICSFYKIFGENP-SGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIEL 391 (588)
Q Consensus 316 vvDaa~~-~~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P-~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~ 391 (588)
|+|+++. ++.. ...++.....+|+++ +.|.+|. + .++|++++++++++.+.....+
T Consensus 243 i~De~~~~~g~~g~~~~~~~~~~~~d~~t--~sK~l~~-G~~~iG~~~~~~~~~~~l~~~~~~----------------- 302 (429)
T 1s0a_A 243 IADEIATGFGRTGKLFACEHAEIAPDILC--LGKALTG-GTMTLSATLTTREVAETISNGEAG----------------- 302 (429)
T ss_dssp EEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGT-SSSCCEEEEECHHHHHHHHTSTTS-----------------
T ss_pred EEeehhhCCcccchHHHhhhcCCCCCEEE--ecccccC-CCccceEEEeCHHHHHHhhcCCCc-----------------
Confidence 9999986 3311 111111123478775 5597773 5 7899999999887766532100
Q ss_pred ccccccccccCCCC--CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCC
Q 037063 392 ETLDESSQSKFPES--SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVM 469 (588)
Q Consensus 392 ~~~~~~~f~e~GT~--~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~ 469 (588)
.+...+|. |..+ .++..++|+.+.+ +.+.++++.+++++.+.|.++.. .+.+..+.
T Consensus 303 ------~~~~~~t~~~n~~~---~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~------~~~~~~~~---- 360 (429)
T 1s0a_A 303 ------CFMHGPTFMGNPLA---CAAANASLAILES---GDWQQQVADIEVQLREQLAPARD------AEMVADVR---- 360 (429)
T ss_dssp ------SCSCCCTTTTCHHH---HHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHGGGGG------CTTEEEEE----
T ss_pred ------ccccCCCCCCCHHH---HHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHhc------CCCEEEEE----
Confidence 00011222 2222 2455677777655 35678888999999999988621 23444222
Q ss_pred CCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC
Q 037063 470 FDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL 549 (588)
Q Consensus 470 ~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~ 549 (588)
..+.++.+.+.+. ++...+.+.|.++||.++.. . ..||+|+++.
T Consensus 361 -~~g~~~~~~~~~~----~~~~~l~~~l~~~Gi~v~~~-----------------------------~--~~iRis~~~~ 404 (429)
T 1s0a_A 361 -VLGAIGVVETTHP----VNMAALQKFFVEQGVWIRPF-----------------------------G--KLIYLMPPYI 404 (429)
T ss_dssp -EETTEEEEEESSC----BCHHHHHHHHHHTTEECCCB-----------------------------T--TEEEECCCTT
T ss_pred -EeeEEEEEEECCc----ccHHHHHHHHHHCCCEEecc-----------------------------C--CEEEEECCCC
Confidence 2356777776531 45667777777889998642 1 1899999999
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q 037063 550 TNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 550 ~t~eDv~~li~~l~~~l~~ 568 (588)
++.||++++++.|++++++
T Consensus 405 ~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 405 ILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp CCHHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999988753
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-21 Score=207.49 Aligned_cols=300 Identities=14% Similarity=0.092 Sum_probs=192.4
Q ss_pred HHHHHHHHHHh----CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCE------
Q 037063 182 SKIRKRIMDFM----NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGAR------ 250 (588)
Q Consensus 182 ~~~r~~ia~~l----ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~------ 250 (588)
.++|+.|++++ +++++ .|+||+|+++++.++ .++ +++||+|++. ..|++ . ...++..|++
T Consensus 114 ~~lr~~ia~~~~~g~~~~~~--~i~~t~G~~~al~~~-~~l-~~~gd~Vl~~~p~~~~-~----~~~~~~~g~~g~~~~~ 184 (449)
T 3qgu_A 114 GALREAVASTFYGHAGRAAD--EIFISDGSKCDIARI-QMM-FGSKPTVAVQDPSYPV-Y----VDTSVMMGMTGDHNGT 184 (449)
T ss_dssp HHHHHHHHHHHHTTTTCCGG--GEEEESCHHHHHHHH-HHH-HCSSSCEEEEESCCTH-H----HHHHHHHTCSCCBCSS
T ss_pred HHHHHHHHHHHHcCCCCCHH--HEEEccCHHHHHHHH-HHH-hCCCCEEEEcCCCChh-H----HHHHHHcCCccccccc
Confidence 57889999988 66655 499999999999998 777 7899997654 44543 3 2344556887
Q ss_pred ----EEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCc
Q 037063 251 ----VSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATAL 322 (588)
Q Consensus 251 ----v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~ 322 (588)
++.++++.. +.+..+ +.+ .+++++|++++++|+||..+|.++ | ++|+++|+++|+|+++.
T Consensus 185 ~~~~~~~~~~~~~-~~~~~~-----~~~------~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~ 252 (449)
T 3qgu_A 185 GFDGIEYMVCNPD-NHFFPD-----LSK------AKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYA 252 (449)
T ss_dssp SBTTEEEEECCGG-GTTCCC-----GGG------CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG
T ss_pred ccceeEEEecccc-cCCcCC-----hhH------cCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchH
Confidence 999988632 222211 110 147899999999999999999555 5 77999999999999966
Q ss_pred CC-------CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccc
Q 037063 323 GS-------KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLD 395 (588)
Q Consensus 323 ~~-------~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~ 395 (588)
.. ..+..++ .....++++.|++|.+|.++.++|++++++++++........ . +...
T Consensus 253 ~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~---~------------~~~~- 315 (449)
T 3qgu_A 253 LYISNPDCPKTIYEIP-GADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHA---D------------WNRV- 315 (449)
T ss_dssp GGCCCTTSCSSGGGST-TGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHH---H------------HHHH-
T ss_pred hhhcCCCCCCCHhhcc-CCCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhhHHH---H------------HHHH-
Confidence 51 1111221 112367999999999984345699999988876420000000 0 0000
Q ss_pred ccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE
Q 037063 396 ESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS 475 (588)
Q Consensus 396 ~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i 475 (588)
. .+ ...+.+.... .+...+++......++++.++++.+++++.+.|.++ +++++.+ ..+.+
T Consensus 316 ~-~~-~~~~~~~~~~---~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~----~~~~~ 376 (449)
T 3qgu_A 316 M-TT-CFNGASNIVQ---AGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM----------GFSVYGG----DDAPY 376 (449)
T ss_dssp H-HH-SCCCCCHHHH---HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------TCCEEES----SSSSE
T ss_pred h-hc-ccCCCCHHHH---HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC----------CCeeeCC----CCeeE
Confidence 0 00 1112222221 233344432111125778888999999999999985 2445544 23566
Q ss_pred EEEEeecCCCCCcCHHHHH-HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHH
Q 037063 476 LAFNVFDWNGTRIDPALVQ-KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFED 554 (588)
Q Consensus 476 v~f~~~~~~g~~i~~~~v~-~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eD 554 (588)
+.+.+.+ ++...+. ++++++||.+++|..|.+ .+.++||+|+ ..+.||
T Consensus 377 ~~~~~~~-----~~~~~~~~~l~~~~gI~v~pg~~f~~------------------------~~~~~iRis~--~~~~e~ 425 (449)
T 3qgu_A 377 IWVGFPG-----KPSWDVFAEILERCNIVTTPGSGYGP------------------------AGEGFVRASA--FGSREN 425 (449)
T ss_dssp EEEECTT-----SCHHHHHHHHHHHHCEECEEGGGGCG------------------------GGTTEEEEEC--CSCHHH
T ss_pred EEEECCC-----CCHHHHHHHHHHHCCEEEecchHhCC------------------------CCCCeEEEEe--cCCHHH
Confidence 6666652 4455554 566677999999876631 1223999995 459999
Q ss_pred HHHHHHHHHHhhhhh
Q 037063 555 TYRLWAFVSRFLDAD 569 (588)
Q Consensus 555 v~~li~~l~~~l~~~ 569 (588)
|+++++.|++++++.
T Consensus 426 i~~~l~~l~~~~~~~ 440 (449)
T 3qgu_A 426 ILEAVRRFKEAYGKR 440 (449)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987653
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-21 Score=204.90 Aligned_cols=307 Identities=15% Similarity=0.060 Sum_probs=198.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....+++++++++++|.+ .+++++|+++|+.+++.++ +++||+|++ ...|+. ....+...++..|++++.++.
T Consensus 80 ~p~~~~l~~~la~~~g~~----~~~~~~sG~~Ai~~al~~l-~~~Gd~Vi~~~~~y~~-~~~~~~~~~~~~g~~~~~v~~ 153 (414)
T 3ndn_A 80 NPTVSVFEERLRLIEGAP----AAFATASGMAAVFTSLGAL-LGAGDRLVAARSLFGS-CFVVCSEILPRWGVQTVFVDG 153 (414)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHTT-CCTTCEEEEESCCCHH-HHHHHHTHHHHTTCEEEEECT
T ss_pred ChHHHHHHHHHHHHHCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEcCCccch-HHHHHHHHHHHcCcEEEEeCC
Confidence 466789999999999973 3899999999999999999 899999764 455654 443444556778999999987
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ |+++|+++|+ +++++|+++.++|++|.+.|+++| ++|+++|+++|+|+++..+....++ .+
T Consensus 154 ~------d~~~l~~ai~--------~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~---~~ 216 (414)
T 3ndn_A 154 D------DLSQWERALS--------VPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGF---PL 216 (414)
T ss_dssp T------CHHHHHHHTS--------SCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCG---GG
T ss_pred C------CHHHHHHhcC--------CCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCch---hc
Confidence 4 7899999998 689999999999999999999999 9999999999999998765212222 23
Q ss_pred CCcEEEeccCccCCCCCCc---eEEEEEeCcchh-cccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchh
Q 037063 336 KPDFLICSFYKIFGENPSG---FGCLFVKKSSAS-VLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVS 411 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G---~G~L~v~~~~~~-~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~ 411 (588)
++|+++.|++|++| +.| .|+++++++.+. .++..... -.++.+. .
T Consensus 217 g~div~~S~sK~l~--~~G~~~~G~vv~~~~~~~~~l~~~~~~--------------------------~g~~~~~--~- 265 (414)
T 3ndn_A 217 GVDVVVYSGTKHID--GQGRVLGGAILGDREYIDGPVQKLMRH--------------------------TGPAMSA--F- 265 (414)
T ss_dssp TCSEEEEETTTTTT--CSSCCCCEEEEECHHHHTTHHHHHHHH--------------------------HCCCCCH--H-
T ss_pred CCCeEeccCCcccc--CCCCceEEEEEECHHHHHHHHHHHHHH--------------------------cCCCCCH--H-
Confidence 38999999999998 556 799999887654 33321100 0011111 1
Q ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCC------------CCcccEEEE
Q 037063 412 SKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVM------------FDRGPSLAF 478 (588)
Q Consensus 412 ~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~------------~~rg~iv~f 478 (588)
....++..++. ++...++..+.++++.+.|.+. |.+ +++.|.-. ...|++++|
T Consensus 266 ---~a~~~~~~l~~--l~~r~~~~~~~a~~l~~~L~~~---------p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~ 331 (414)
T 3ndn_A 266 ---NAWVLLKGLET--LAIRVQHSNASAQRIAEFLNGH---------PSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTF 331 (414)
T ss_dssp ---HHHHHHHHGGG--HHHHHHHHHHHHHHHHHHHHTC---------TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEE
T ss_pred ---HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcC---------CCEeEEECCCCCCCcCHHHHHHhCCCCceEEEE
Confidence 11122222222 3444555566677777777763 444 45444321 124689999
Q ss_pred EeecCCC-CCcCHHHHHHHHHhCCcEeccccccCc----ccc-cchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCCCC
Q 037063 479 NVFDWNG-TRIDPALVQKLADRHNISLSCGFLQNI----FFS-GEYEQERVRVLETRSGTNETRSGV--SVVTAALGCLT 550 (588)
Q Consensus 479 ~~~~~~g-~~i~~~~v~~~l~~~gI~v~~G~~c~~----~~~-~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~~ 550 (588)
.+.+... .......+...+...+|.++.|..++. ... ..... ...... .|. ..||+|+|.
T Consensus 332 ~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~--~~~~~~--------~g~~~~~iRlsvG~-- 399 (414)
T 3ndn_A 332 ALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMG--PEGRAA--------IGLGDGVVRISVGL-- 399 (414)
T ss_dssp EECSCGGGHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTCTTH--HHHHHH--------TTCCTTEEEEECCS--
T ss_pred EEcCCccccHHHHHHHHHhCccceEcCCCCCCCceeeCccccccccCC--HHHHHh--------cCCCCCeEEEEeCc--
Confidence 9865100 001123334444445666777765442 111 01100 111111 222 399999997
Q ss_pred CHHHHHHHHHHHHHhh
Q 037063 551 NFEDTYRLWAFVSRFL 566 (588)
Q Consensus 551 t~eDv~~li~~l~~~l 566 (588)
||++.+++.|.+.|
T Consensus 400 --e~~~dli~dl~~al 413 (414)
T 3ndn_A 400 --EDTDDLIADIDRAL 413 (414)
T ss_dssp --SCHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHhh
Confidence 66777777766654
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-21 Score=206.51 Aligned_cols=303 Identities=12% Similarity=0.089 Sum_probs=195.9
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHH--HHHHHhCCCCC---C---------CeEEEc-CCCchhHHHHHHHHHHh
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAF--KLLAESYPFYS---N---------PRLLTV-YDHENEAAALMIESSKK 246 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al--~lv~~s~~~~~---g---------d~ll~~-~e~~s~~~~~~~~~a~~ 246 (588)
.++|+.|++++++++++ |++|+|+++++ .+++.++ ..+ | ++|++. ..|+. . ...++.
T Consensus 79 ~~lr~~ia~~~~~~~~~--i~~t~G~~~al~l~~~~~~l-~~~~~~g~~~~~~~d~~~Vl~~~p~y~~-~----~~~~~~ 150 (422)
T 3d6k_A 79 ADIRELWAEALGLPADL--VVAQDGSSLNIMFDLISWSY-TWGNNDSSRPWSAEEKVKWLCPVPGYDR-H----FTITEH 150 (422)
T ss_dssp HHHHHHHHHHHTCCGGG--EEECSSCHHHHHHHHHHHHH-HHCCTTCSSCGGGSSCCEEEEEESCCHH-H----HHHHHH
T ss_pred HHHHHHHHHHhCCChhH--EEEecchHHHHHHHHHHHHh-cCcccccccccccCCCCEEEEeCCccHH-H----HHHHHH
Confidence 58999999999998765 99999999997 7777776 333 3 366654 44442 2 344566
Q ss_pred cCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEE-EeCCCCCCCccCCHHH---H-HHHH-HcCcEEEEeCC
Q 037063 247 RGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFV-FPLQSKVTGARYSYMW---M-SVAA-EKGWHVLLDAT 320 (588)
Q Consensus 247 ~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~-~~~~sn~tG~~~pl~~---I-~~a~-~~g~~vvvDaa 320 (588)
.|++++.++++ +++ +|+++|+++++. .++++|+ +++++||||..+|.++ | ++|+ ++|++||+|++
T Consensus 151 ~g~~~~~v~~~-~~g-~d~~~l~~~l~~-------~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~ 221 (422)
T 3d6k_A 151 FGFEMINVPMT-DEG-PDMGVVRELVKD-------PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNA 221 (422)
T ss_dssp HTCEEEEEEEE-TTE-ECHHHHHHHHTS-------TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECT
T ss_pred cCCEEEecCCC-CCC-CCHHHHHHHHhc-------CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECC
Confidence 79999999997 454 999999999971 3688877 7999999999999985 4 6666 89999999999
Q ss_pred CcC-CC--C---CCCC-C----CCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccc
Q 037063 321 ALG-SK--D---MDTL-G----LSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEII 389 (588)
Q Consensus 321 ~~~-~~--d---~~~l-~----l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~ 389 (588)
+.. .. + ..++ + +.....++++.|++|..+ +..++|++++++++++.+......
T Consensus 222 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~GlriG~~~~~~~l~~~l~~~~~~--------------- 285 (422)
T 3d6k_A 222 YALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITH-AGSGVSFFASSKENIEWYASHANV--------------- 285 (422)
T ss_dssp TTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSC-TTSSCEEEECCHHHHHHHHHHHHH---------------
T ss_pred ccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcC-cccceEEEEeCHHHHHHHHHHHHh---------------
Confidence 852 11 1 1111 1 112346899999999844 234699999998877766532210
Q ss_pred ccccccccccccCCCCCccchhhHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCC
Q 037063 390 ELETLDESSQSKFPESSISGVSSKLVECKGLDH---ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGP 466 (588)
Q Consensus 390 ~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~---l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p 466 (588)
+ ..+++.+.+ .++..+|+. +.+. ++++.++++...+++.+.|.+.- + +.++++++.|
T Consensus 286 ---------~-~~~~~~~~q----~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~l-~----~~~~~~~~~p 345 (422)
T 3d6k_A 286 ---------R-GIGPNKLNQ----LAHAQFFGDVAGLKAH-MLKHAASLAPKFERVLEILDSRL-S----EYGVAKWTSP 345 (422)
T ss_dssp ---------H-CSCCCHHHH----HHHHHHHCSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-G----GGTCEEECCC
T ss_pred ---------h-cCCCCHHHH----HHHHHHHhCcchHHHH-HHHHHHHHHHHHHHHHHHHHHhc-C----cCCceEEeCC
Confidence 0 011111111 222334432 1111 34444444444555555554310 0 0124666554
Q ss_pred CCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEecc-ccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe
Q 037063 467 KVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSC-GFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA 545 (588)
Q Consensus 467 ~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~-G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS 545 (588)
..+.++.+.+.+. +...+.+++.++||.+++ |..|..+. ..+.++||+|
T Consensus 346 ----~~g~~~~~~~~~~-----~~~~~~~~l~~~gV~v~~~g~~f~~~~---------------------~~~~~~iRis 395 (422)
T 3d6k_A 346 ----TGGYFISVDVVPG-----TASRVVELAKEAGIALTGAGSSFPLHN---------------------DPNNENIRLA 395 (422)
T ss_dssp ----SBSSCEEEEESTT-----CHHHHHHHHHHTTEECCCTTTTSGGGC---------------------CTTSCEEEEC
T ss_pred ----CcceEEEEECCCC-----CHHHHHHHHHHCCeEEEcCccccCCCC---------------------CCCCCeEEEe
Confidence 2355666666541 466788889999999998 44342100 0112389999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhh
Q 037063 546 LGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 546 lg~~~t~eDv~~li~~l~~~l~~ 568 (588)
++. ++.+|++++++.|++++++
T Consensus 396 ~~~-~~~e~i~~~~~~l~~~l~~ 417 (422)
T 3d6k_A 396 PSL-PPVAELEVAMDGFATCVLM 417 (422)
T ss_dssp CSS-SCHHHHHHHHHHHHHHHHH
T ss_pred cCC-CCHHHHHHHHHHHHHHHHH
Confidence 998 8999999999999998765
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-20 Score=196.40 Aligned_cols=319 Identities=13% Similarity=0.048 Sum_probs=203.2
Q ss_pred HHHHHHHHHH-HHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 179 ELESKIRKRI-MDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 179 ~~~~~~r~~i-a~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
...+++|+.+ ++++|. .+ .+++++|+|+|+.+++.++.+++||+|+ ....|++ . ...++..|++++++++
T Consensus 36 ~~~~~l~~~~~a~~~g~-~~--~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~-~----~~~~~~~G~~~~~v~~ 107 (377)
T 3ju7_A 36 PINQRFEQTIMSGFFQN-RG--AVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPA-T----PLAAIWCGLEPYFIDI 107 (377)
T ss_dssp HHHHHHHHHHHHHTSTT-CS--EEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTH-H----HHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHHHHhCC-CC--eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHH-H----HHHHHHcCCEEEEEec
Confidence 4467999999 999993 22 3899999999999999987789999966 5566664 2 2344668999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCc--ceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC--CCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKK--RGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK--DMDTLG 331 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~--t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~--d~~~l~ 331 (588)
++.++.+|+++|++++.. ++ |++|+ ++|++|...|+++| ++|+ +|++||+|++|..+. +...++
T Consensus 108 ~~~~~~~d~~~l~~~i~~-------~~~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g 176 (377)
T 3ju7_A 108 SIDDWYMDKTVLWDKIEE-------LKEEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYG 176 (377)
T ss_dssp CTTTCSBCHHHHHHHHHH-------HGGGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETT
T ss_pred CCccCCcCHHHHHHHHhc-------CCCCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEecc
Confidence 866788999999999831 34 88887 45679999999999 9999 999999999998762 112221
Q ss_pred CCCCCCcEEEecc--CccCCCCCCceEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCC-CCCc
Q 037063 332 LSLFKPDFLICSF--YKIFGENPSGFGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP-ESSI 407 (588)
Q Consensus 332 l~~~~~D~vv~S~--~K~~G~~P~G~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G-T~~~ 407 (588)
....|+.++|+ +|.+| +...|+++.++ ++.++++..... |... . . ...+.| ...+
T Consensus 177 --~~~~d~~~~S~~~~K~l~--~g~gG~~~~~~~~l~~~~~~~~~~--g~~~----~-----~------~~~~~g~~~~~ 235 (377)
T 3ju7_A 177 --QDFSGMIIYSFHATKPFG--IGEGGLIYSKNEEDIQRIKRMGNF--GFDT----N-----R------ECTMMGFNCKM 235 (377)
T ss_dssp --TTCSSEEEEECBTTSSSC--CBSCEEEEESCHHHHHHHHHHTBT--TBCT----T-----S------CBCSSCCBCCC
T ss_pred --CCCCcEEEEECCCCCcCC--CCCcEEEEECCHHHHHHHHHHHhc--CCCC----C-----C------ceeeccccCCC
Confidence 01146666665 69888 42456666665 344555443322 1100 0 0 000222 1122
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEE-eCCCCCCCccc-EEEEEeecCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRI-YGPKVMFDRGP-SLAFNVFDWNG 485 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i-~~p~~~~~rg~-iv~f~~~~~~g 485 (588)
..+ . ...++..++ .++.+.++.+.+++++.+.|.++. ++++ +.+........ .+.+.+.+.
T Consensus 236 ~~~---~-aa~~~~~l~--~l~~~~~~~~~~~~~~~~~L~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-- 298 (377)
T 3ju7_A 236 SEY---A-AAIGIATMK--KWDDKLKERTRISEWYKQLLQSNG---------LMKKGWQLQKTEAVIQQFMPILCPEE-- 298 (377)
T ss_dssp CHH---H-HHHHHHHHH--THHHHHHHHHHHHHHHHHHHHHTT---------TTTTTCBCCCCSCBCCSSEEEECCTT--
T ss_pred CHH---H-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCC---------CccccccCCCCCcceEEEEEEEeCCh--
Confidence 222 1 112333333 357888888999999999998852 1100 11111111111 334444331
Q ss_pred CCcCHHHHHHHHHhCCcEecccc--ccCcc--ccc---chHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHH
Q 037063 486 TRIDPALVQKLADRHNISLSCGF--LQNIF--FSG---EYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRL 558 (588)
Q Consensus 486 ~~i~~~~v~~~l~~~gI~v~~G~--~c~~~--~~~---~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~l 558 (588)
.+.+.+.+.|.++||.++.+. .|+.. +.. ... .....+.++ .||++++...|.|||+++
T Consensus 299 --~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~-----------~l~lp~~~~~t~~di~~v 364 (377)
T 3ju7_A 299 --VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDL-TRTNKIAKR-----------IVSLPLWEGMTKEIVEQI 364 (377)
T ss_dssp --SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCC-HHHHHHHHH-----------EEEECCCTTCCHHHHHHH
T ss_pred --hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCC-HHHHHHHhC-----------EEECCCCCCCCHHHHHHH
Confidence 347889999999999998876 45431 110 000 011122222 899999999999999999
Q ss_pred HHHHHHhhhh
Q 037063 559 WAFVSRFLDA 568 (588)
Q Consensus 559 i~~l~~~l~~ 568 (588)
++.|++++..
T Consensus 365 ~~~l~~~~~~ 374 (377)
T 3ju7_A 365 VICLGQKVVS 374 (377)
T ss_dssp HHHHTC----
T ss_pred HHHHHHHHhc
Confidence 9999887654
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-21 Score=201.82 Aligned_cols=324 Identities=10% Similarity=0.051 Sum_probs=214.0
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|+|.++. |+.++.+++++.+.+.. ..+. + + . + ..+..++
T Consensus 38 ~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~--~~~~-~--------------------~---~--~---~~~~~~~ 86 (397)
T 2ord_A 38 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEK--LIHC-S--------------------N---L--F---WNRPQME 86 (397)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHH--CSCC-C--------------------T---T--S---EEHHHHH
T ss_pred CCCEEEECCccccccccCCCCHHHHHHHHHHHHh--cccC-c--------------------c---c--c---CCHHHHH
Confidence 46779998654 44578888888666532 1111 0 0 0 1 1466789
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCC------CC-CeEE-EcCCCchhHHHHHHHHHHhcCCE-----
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFY------SN-PRLL-TVYDHENEAAALMIESSKKRGAR----- 250 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~------~g-d~ll-~~~e~~s~~~~~~~~~a~~~G~~----- 250 (588)
+++++++++|. + .|+||+|+|+|+.+++.++ .. +| ++|+ ....||.....+ ++..|.+
T Consensus 87 l~~~la~~~g~--~--~v~~~~gg~~a~~~al~~~-~~~~~~~~~~~~~vi~~~~~yh~~~~~~----~~~~g~~~~~~~ 157 (397)
T 2ord_A 87 LAELLSKNTFG--G--KVFFANTGTEANEAAIKIA-RKYGKKKSEKKYRILSAHNSFHGRTLGS----LTATGQPKYQKP 157 (397)
T ss_dssp HHHHHHHTTTS--C--EEEEESSHHHHHHHHHHHH-HHHHHHHCTTCCEEEEEBTCCCCSSHHH----HHHSBCHHHHGG
T ss_pred HHHHHHHhcCC--C--eEEEeCCHHHHHHHHHHHH-HHHhhcCCCCCceEEEEcCCcCCCchhh----hhccCChhhccc
Confidence 99999999984 3 4999999999999998876 32 44 5654 555666533322 2334554
Q ss_pred -------EEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCc-cC---CHHHH-HHHHHcCcEEEEe
Q 037063 251 -------VSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGA-RY---SYMWM-SVAAEKGWHVLLD 318 (588)
Q Consensus 251 -------v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~-~~---pl~~I-~~a~~~g~~vvvD 318 (588)
+..++.+ |+++|+++++ +++++|++++++|+||. .+ ++++| ++|+++|+++|+|
T Consensus 158 ~~p~~~~~~~~~~~------d~~~l~~~l~--------~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~D 223 (397)
T 2ord_A 158 FEPLVPGFEYFEFN------NVEDLRRKMS--------EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFD 223 (397)
T ss_dssp GCSCCTTEEEECTT------CHHHHHHHCC--------TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEE
T ss_pred cCCCCCCeeEecCC------CHHHHHHHhh--------cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 6666542 7899999887 68999999999999999 55 45667 8899999999999
Q ss_pred CCCcC-CCCCCCCCCC--CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccc
Q 037063 319 ATALG-SKDMDTLGLS--LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLD 395 (588)
Q Consensus 319 aa~~~-~~d~~~l~l~--~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~ 395 (588)
+++.. ..+-..+.+. ...+|++ +++|.+|. +.++|+++++++++ .+.+...+.
T Consensus 224 e~~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~r~G~~~~~~~~~-~l~~~~~~~-------------------- 279 (397)
T 2ord_A 224 EVQCGMGRTGKLFAYQKYGVVPDVL--TTAKGLGG-GVPIGAVIVNERAN-VLEPGDHGT-------------------- 279 (397)
T ss_dssp CTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSCCEEEEECSTTC-CCCTTSSCC--------------------
T ss_pred ecccCCccCccchhhhhhCCCCCee--eeccccCC-CcCeEEEEEchHhc-ccCCCCcCC--------------------
Confidence 99862 1111111111 1127866 66898883 56799999998875 443321110
Q ss_pred ccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE
Q 037063 396 ESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS 475 (588)
Q Consensus 396 ~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i 475 (588)
.| +.+... .+++.++|+.+.+ +++.++.+++++++.+.|.++.. +.+.+.... ..+.+
T Consensus 280 --~~----~~~~~~---~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~-----~~~~~~~~~-----~~g~~ 337 (397)
T 2ord_A 280 --TF----GGNPLA---CRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKE-----EYDVVADVR-----GMGLM 337 (397)
T ss_dssp --SS----TTCHHH---HHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHH-----HCTTEEEEE-----EETTE
T ss_pred --CC----CCCHHH---HHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHH-----hCCceEEEE-----EEeEE
Confidence 00 112222 2444566666543 56778888888888888877510 022222111 24678
Q ss_pred EEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHH
Q 037063 476 LAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDT 555 (588)
Q Consensus 476 v~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv 555 (588)
+.|.+.+. .+...+.+.|.++||.++.|. . ..||+|+++.++.||+
T Consensus 338 ~~~~~~~~----~~~~~l~~~l~~~gi~v~~~~----------------------------~--~~iRis~~~~~~~e~i 383 (397)
T 2ord_A 338 IGIQFREE----VSNREVATKCFENKLLVVPAG----------------------------N--NTIRFLPPLTVEYGEI 383 (397)
T ss_dssp EEEEECTT----SCHHHHHHHHHHTTEECEEET----------------------------T--TEEEECCCTTCCHHHH
T ss_pred EEEEECCh----HHHHHHHHHHHHCCCEEccCC----------------------------C--CEEEEECCcCCCHHHH
Confidence 88877541 346677777777999988651 1 1899999999999999
Q ss_pred HHHHHHHHHhhh
Q 037063 556 YRLWAFVSRFLD 567 (588)
Q Consensus 556 ~~li~~l~~~l~ 567 (588)
+++++.|+++++
T Consensus 384 ~~~~~~l~~~l~ 395 (397)
T 2ord_A 384 DLAVETLKKVLQ 395 (397)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-21 Score=205.71 Aligned_cols=311 Identities=10% Similarity=0.026 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
...+.+|+.+++++|++. ..++++|+|+|+.+++.++ +++||+|++ ...|++....+........+.+++.++.+
T Consensus 78 ~~~~~a~~~~~~~~~~~~---~~v~~~~Gs~a~~~al~~~-~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 153 (425)
T 3ecd_A 78 EVEALAIERVKRLFNAGH---ANVQPHSGAQANGAVMLAL-AKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVS 153 (425)
T ss_dssp HHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHH-CCTTCEEEEECC------------------CEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCC---ceeecCchHHHHHHHHHHc-cCCCCEEEEcccccccceecchhhhhcccceeeeecCCC
Confidence 455667799999999863 3567899999999999998 899999664 44554312122111111223355566665
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC--CCCCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK--DMDTLGLSL 334 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~--d~~~l~l~~ 334 (588)
..++.+|+++|++++.+ +++++|++++++| |...++++| ++|+++|+++|+|++|..+. .-..... .
T Consensus 154 ~~~~~~d~~~l~~~i~~-------~~~~~v~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~-~ 223 (425)
T 3ecd_A 154 RDTMLIDYDQVEALAQQ-------HKPSLIIAGFSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP-V 223 (425)
T ss_dssp TTTSSCCHHHHHHHHHH-------HCCSEEEEECSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG-G
T ss_pred cccCccCHHHHHHHHhh-------cCCcEEEEccccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCc-h
Confidence 44578999999999972 3688999987666 788999999 99999999999999975531 0011110 1
Q ss_pred CCCcEEEeccCccCCCCCCceEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhH
Q 037063 335 FKPDFLICSFYKIFGENPSGFGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSK 413 (588)
Q Consensus 335 ~~~D~vv~S~~K~~G~~P~G~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~ 413 (588)
..+|++++|+||+++. |. .|+++.++ .+.+.+......+ ..|+++...+
T Consensus 224 ~~~di~~~s~sK~l~g-~~-~g~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~--- 273 (425)
T 3ecd_A 224 EHAHVVTSTTHKTLRG-PR-GGFVLTNDEEIAKKINSAVFPG-------------------------LQGGPLMHVI--- 273 (425)
T ss_dssp GTCSEEEEESSGGGCC-CS-CEEEEESCHHHHHHHHHHHC------------------------------CCCHHHH---
T ss_pred hcCcEEEecCCcccCC-CC-cEEEEeCCHHHHHHHHhhhCcc-------------------------ccCCccHHHH---
Confidence 1279999999997752 65 59999885 4444443322110 1122222222
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHH
Q 037063 414 LVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALV 493 (588)
Q Consensus 414 ~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v 493 (588)
+++..++......+++.+.++.+.+++++.+.|.++ +++++.+. ..+.++.+.+.+.. ++...+
T Consensus 274 ~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~~---~~~~~~~~~~~~~~---~~~~~~ 337 (425)
T 3ecd_A 274 AGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG----------GVDLVTGG---TDNHLLLVDLRPKG---LKGAQV 337 (425)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----------TCEEGGGS---CSSSEEEEECGGGT---CCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC----------CCeeccCC---CCceEEEEEeCCCC---CCHHHH
Confidence 344455544333346788999999999999999884 35565432 24567777765321 457788
Q ss_pred HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCC----HHHHHHHHHHHHHhhhhh
Q 037063 494 QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTN----FEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 494 ~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t----~eDv~~li~~l~~~l~~~ 569 (588)
.+.|.++||.++.+.. ++.... ..+...+|++++.+++ .+||+++++.|+++++..
T Consensus 338 ~~~l~~~gi~v~~~~~--p~~~~~------------------~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 338 EQALERAGITCNKNGI--PFDPEK------------------PTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp HHHHHHTTEECEECCC--TTCSSC------------------TTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCEeccccc--CCCCCC------------------CCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 8999999999985531 110000 0122389999766655 999999999999998764
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-21 Score=204.63 Aligned_cols=297 Identities=10% Similarity=0.011 Sum_probs=192.8
Q ss_pred HHHHHHHHHh----CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 183 KIRKRIMDFM----NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 183 ~~r~~ia~~l----ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
++|+.+++++ +.+. ...|++|+|+|+|+.+++.++ +++||+|++....+... ...++..|++++.++++.
T Consensus 84 ~lr~~ia~~~~~~~~~~~-~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~v~~~~ 157 (418)
T 3rq1_A 84 DFLCAAEKECFGNFRPEG-HIRSIATAGGTGGIHHLIHNY-TEPGDEVLTADWYWGAY----RVICSDTGRTLVTYSLFD 157 (418)
T ss_dssp HHHHHHHHHHHGGGCCSS-EEEEEEESHHHHHHHHHHHHH-SCTTCEEEEESSCCTHH----HHHHHHTTCEEEEECSBC
T ss_pred HHHHHHHHHHhcccCccc-cccEEECCchHHHHHHHHHHh-cCCCCEEEECCCCchhH----HHHHHHcCCEEEEEeeeC
Confidence 5677777755 3321 125999999999999999999 89999977655443322 345577899999999864
Q ss_pred CCCccCHHHHHHHHhhhccccCCCcce-EEEEeCC-CCCCCccCCHHHH-HH---HH------HcCcEEEEeCCCcC-CC
Q 037063 259 PNLRIHSGKLMKKIVGKRKKKKKKKRG-LFVFPLQ-SKVTGARYSYMWM-SV---AA------EKGWHVLLDATALG-SK 325 (588)
Q Consensus 259 ~~~~i~~e~l~~~i~~~~~~~~~~~t~-Lv~~~~~-sn~tG~~~pl~~I-~~---a~------~~g~~vvvDaa~~~-~~ 325 (588)
+++.+|+++|++++++ ...++++ +++++++ +|+||..+|.+++ ++ |+ ++|+++|+|+++.. ..
T Consensus 158 ~~~~~d~~~l~~~l~~----~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~ 233 (418)
T 3rq1_A 158 EHNNFNHEAFQNRVNE----LAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSG 233 (418)
T ss_dssp TTSSBCHHHHHHHHHH----HHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSS
T ss_pred CCCCcCHHHHHHHHHH----hhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccC
Confidence 5678999999999972 0001455 8889989 9999999998886 54 44 89999999999532 10
Q ss_pred C---CCCC-C-CCCCCCc---EEEeccCccCCCCCCceEEEEE---eCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 326 D---MDTL-G-LSLFKPD---FLICSFYKIFGENPSGFGCLFV---KKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 326 d---~~~l-~-l~~~~~D---~vv~S~~K~~G~~P~G~G~L~v---~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
+ ...+ . ......| +++.|++|.+|.+..++|++++ ++++++.+....... ..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-~~---------------- 296 (418)
T 3rq1_A 234 EKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKST-SR---------------- 296 (418)
T ss_dssp CHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHH-HH----------------
T ss_pred ChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHH-Hh----------------
Confidence 0 0000 0 1111234 7778999988853456899998 777776654322100 00
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHH---HHh--CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCC
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHA---DAL--GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVM 469 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l---~~~--G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~ 469 (588)
. ...+.+..+. .++..+|+.. +.+ .++++.++.+..++++.+.|.++ | ++++.|
T Consensus 297 ----~-~~~~~~~~~~---~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g---~~~~~~--- 355 (418)
T 3rq1_A 297 ----A-TWSNICRPAM---RTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-------G---LPMLPY--- 355 (418)
T ss_dssp ----H-HTSSCCHHHH---HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------T---CCCCCC---
T ss_pred ----h-ccCCCchHHH---HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------C---CCCCCC---
Confidence 0 0001121111 2333333211 000 13456677788888888888875 2 333332
Q ss_pred CCcccEEEE-EeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCC
Q 037063 470 FDRGPSLAF-NVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGC 548 (588)
Q Consensus 470 ~~rg~iv~f-~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~ 548 (588)
.++++.+ .+. +...+.+.|.++||.+++| .+ .||+|++
T Consensus 356 --~~~~~~~~~~~-------~~~~~~~~l~~~gi~v~~g-----------------------------~~--~iRis~~- 394 (418)
T 3rq1_A 356 --RGGFFITIPTD-------SANAICEELKKEHIYVIAL-----------------------------AN--GIRIAAC- 394 (418)
T ss_dssp --CSSSEEEEECT-------THHHHHHHHHHTTEECEEC-----------------------------SS--EEEEEGG-
T ss_pred --CceEEEEcCCC-------CHHHHHHHHHhCCEEEecC-----------------------------CC--CeEEEEe-
Confidence 3444433 221 3667778889999999876 12 7999987
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 037063 549 LTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 549 ~~t~eDv~~li~~l~~~l~~ 568 (588)
..+.+|++++++.|++++++
T Consensus 395 ~~~~~~i~~~~~~l~~~l~~ 414 (418)
T 3rq1_A 395 GIPKCQMTGLAEKIYNAMKS 414 (418)
T ss_dssp GSCHHHHTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999998864
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-20 Score=199.43 Aligned_cols=345 Identities=11% Similarity=0.050 Sum_probs=216.6
Q ss_pred CCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|+|.++ .|+.++.+++++.+.+.. ..+. .. .++ ..+...+
T Consensus 39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~--~~~~----------------------~~----~~~--~~~~~~~ 88 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKK--LSHT----------------------CF----QVL--AYEPYLE 88 (426)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTT--CSCC----------------------CT----TTE--ECHHHHH
T ss_pred CCCEEEEcccChhhcccCCCCHHHHHHHHHHHHh--CCCc----------------------cc----ccc--CCHHHHH
Confidence 4567888753 345678888888666532 1111 00 011 1355679
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHH---hCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCC----------
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAE---SYPFYSNPRLL-TVYDHENEAAALMIESSKKRGA---------- 249 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~---s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~---------- 249 (588)
+|+.|+++++.+. ...|+||+|+++|+.+++. .+ .++| +|+ ....||.....++ ...|.
T Consensus 89 l~~~la~~~~~~~-~~~v~~~~g~~~a~~~~~~~a~~~-~~~~-~vi~~~p~y~~~~~~~~----~~~g~~~~~~~~~~~ 161 (426)
T 1sff_A 89 LCEIMNQKVPGDF-AKKTLLVTTGSEAVENAVKIARAA-TKRS-GTIAFSGAYHGRTHYTL----ALTGKVNPYSAGMGL 161 (426)
T ss_dssp HHHHHHHHSSCSS-CEEEEEESSHHHHHHHHHHHHHHH-HTCC-EEEEETTCCCCSSHHHH----HHSSCCTTTTTTSCC
T ss_pred HHHHHHHhCCccc-ccEEEEeCchHHHHHHHHHHHHHh-hCCC-eEEEECCCcCCCchHhh----hhcCCccccccccCC
Confidence 9999999993232 1359999999999999987 55 4555 644 5566665333232 22233
Q ss_pred ---EEEEEeccC----CCCccCHHHHHHHHhhhccccCCCcceEEEEe-CCCCCCCccCC----HHHH-HHHHHcCcEEE
Q 037063 250 ---RVSSAEFAW----PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFP-LQSKVTGARYS----YMWM-SVAAEKGWHVL 316 (588)
Q Consensus 250 ---~v~~v~~~~----~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~-~~sn~tG~~~p----l~~I-~~a~~~g~~vv 316 (588)
.++.++++. .++.+|.++|++++++ ....+++++|++. .++| ||.+.+ +++| ++|+++|++||
T Consensus 162 ~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~---~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li 237 (426)
T 1sff_A 162 MPGHVYRALYPCPLHGISEDDAIASIHRIFKN---DAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLI 237 (426)
T ss_dssp CCSSEEEECCCBGGGTBCHHHHHHHHHHHHHH---TCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCCcEEeCCCccccccchHHHHHHHHHHHHh---ccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 277777752 1234788999998862 0011357788884 4566 998887 8888 99999999999
Q ss_pred EeCCCc-CCCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccc
Q 037063 317 LDATAL-GSKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELET 393 (588)
Q Consensus 317 vDaa~~-~~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~ 393 (588)
+|+++. ++.. ...++.....+|++ |++|.+|. +..+|++++++++++.+.....+ +
T Consensus 238 ~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-GlriG~~~~~~~~~~~l~~~~~~--~---------------- 296 (426)
T 1sff_A 238 ADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-GFPLAGVTGRAEVMDAVAPGGLG--G---------------- 296 (426)
T ss_dssp EECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-SSCCEEEEEEHHHHTTSCTTSBC--C----------------
T ss_pred EechhhccCcccchhhhhhcCCCCCEE--EEcccccC-CCceEEEEEcHHHHhhhccCCcC--c----------------
Confidence 999976 2211 11111112237766 77899982 23379999999887766532111 0
Q ss_pred ccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc
Q 037063 394 LDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG 473 (588)
Q Consensus 394 ~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg 473 (588)
.. +.+... .+++.++|+++.+ +.+.++++.+++++.+.|.++... .+.+..+. ..|
T Consensus 297 -------~~-~~~~~~---~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~~~-----~~g 352 (426)
T 1sff_A 297 -------TY-AGNPIA---CVAALEVLKVFEQ---ENLLQKANDLGQKLKDGLLAIAEK-----HPEIGDVR-----GLG 352 (426)
T ss_dssp -------SS-SSCHHH---HHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHT-----CTTEEEEE-----EET
T ss_pred -------CC-CCCHHH---HHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHh-----CCCeEEEE-----EEE
Confidence 00 112222 2455677787765 346778888888888888775200 23333221 236
Q ss_pred cEEEEEeecCC----CCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC
Q 037063 474 PSLAFNVFDWN----GTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL 549 (588)
Q Consensus 474 ~iv~f~~~~~~----g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~ 549 (588)
.++.+.+.+.. ....+...+.+.|.++||.+++|... . .+||+++++.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~--------------------------~--~~iRi~~~~~ 404 (426)
T 1sff_A 353 AMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPY--------------------------Y--NVLRILVPLT 404 (426)
T ss_dssp TEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTT--------------------------S--CEEEECCCTT
T ss_pred EEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCC--------------------------C--CEEEEECCcc
Confidence 78888874310 00123455666677789999876321 1 2899999999
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q 037063 550 TNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 550 ~t~eDv~~li~~l~~~l~~ 568 (588)
++.+|++++++.|++++++
T Consensus 405 ~~~~~i~~~~~~l~~~l~~ 423 (426)
T 1sff_A 405 IEDAQIRQGLEIISQCFDE 423 (426)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-20 Score=202.04 Aligned_cols=309 Identities=13% Similarity=0.052 Sum_probs=200.2
Q ss_pred HHHHHHHHHh----CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 183 KIRKRIMDFM----NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 183 ~~r~~ia~~l----ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
++|+.|++++ |.+.+...|++|+|+++|+.+++.++..++||+|+++...+... ...++..|++++.++++.
T Consensus 138 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~~~~~~ 213 (500)
T 3tcm_A 138 GLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLY----SASIALHGGALVPYYLNE 213 (500)
T ss_dssp HHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHH----HHHHHHTTCEEEEEECBT
T ss_pred HHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhH----HHHHHHcCCEEEEEeccc
Confidence 4555555554 53322335999999999999999998337999976544433322 344566899999999874
Q ss_pred C-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcCC-C----CCC
Q 037063 259 P-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALGS-K----DMD 328 (588)
Q Consensus 259 ~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~~-~----d~~ 328 (588)
. ++.+|+++|+++|+.. +....++++|++.+++||||..+|.+.+ ++|+++|+++++|.+.... . ...
T Consensus 214 ~~~~~~d~~~l~~~l~~~--~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~ 291 (500)
T 3tcm_A 214 STGWGLETSDVKKQLEDA--RSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFH 291 (500)
T ss_dssp TTTSBCCHHHHHHHHHHH--HHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCC
T ss_pred ccCCCCCHHHHHHHHHHH--HhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCC
Confidence 3 3479999999999821 1112378999999999999999997765 5599999999999985432 1 011
Q ss_pred -------CCCCCCCCC-cEEEeccCccC-CCCCCceEEEEE---eCcchhcccCCCCCCCceEeeecCCCcccccccccc
Q 037063 329 -------TLGLSLFKP-DFLICSFYKIF-GENPSGFGCLFV---KKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDE 396 (588)
Q Consensus 329 -------~l~l~~~~~-D~vv~S~~K~~-G~~P~G~G~L~v---~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~ 396 (588)
.++.....+ .+++.|++|.| |.+..++|++++ ++++++.+......
T Consensus 292 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~---------------------- 349 (500)
T 3tcm_A 292 SFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASV---------------------- 349 (500)
T ss_dssp CHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHHT----------------------
T ss_pred cHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHhc----------------------
Confidence 111101112 25667999977 732345799998 77776655422100
Q ss_pred cccccCCCCCccchhhHHHHHHHHH-----------HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeC
Q 037063 397 SSQSKFPESSISGVSSKLVECKGLD-----------HADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYG 465 (588)
Q Consensus 397 ~~f~e~GT~~~~~~~~~~al~~aL~-----------~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~ 465 (588)
..+++..+. +++..+++ +.+. ++.+.++++..++++.+.|.++ ++++++.
T Consensus 350 -----~~~~~~~~q---~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~---------~g~~~~~ 410 (500)
T 3tcm_A 350 -----NLCSNITGQ---ILASLVMNPPKASDESYASYKAE--KDGILASLARRAKALEHAFNKL---------EGITCNE 410 (500)
T ss_dssp -----TCCCCHHHH---HHHHHHHSCCCSSSTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTS---------TTEECCC
T ss_pred -----ccCCCHHHH---HHHHHHhcCccccchhHHHHHHH--HHHHHHHHHHHHHHHHHHHhcC---------CCcEEec
Confidence 011222221 23334442 2233 4777888889999999999884 6787765
Q ss_pred CCCCCCcccEEEEE-eecCCC-------CCcCHHH--HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCC
Q 037063 466 PKVMFDRGPSLAFN-VFDWNG-------TRIDPAL--VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNET 535 (588)
Q Consensus 466 p~~~~~rg~iv~f~-~~~~~g-------~~i~~~~--v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~ 535 (588)
| .++++.|. +....+ ..+..+. +.++|++.||.+.+|..|...
T Consensus 411 ~-----~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~---------------------- 463 (500)
T 3tcm_A 411 A-----EGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQV---------------------- 463 (500)
T ss_dssp C-----CBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCC----------------------
T ss_pred C-----CeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC----------------------
Confidence 4 45555542 221000 0011222 458888899999998766310
Q ss_pred cCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 536 RSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 536 ~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.|...||+|++ .+.+|++++++.|++++++
T Consensus 464 -~g~~~iRis~~--~~~e~i~~~i~~l~~~~~~ 493 (500)
T 3tcm_A 464 -PGTWHFRCTIL--PQEDKIPAVISRFTVFHEA 493 (500)
T ss_dssp -TTCCBEEEESC--SCTTTHHHHHHHHHHHHHH
T ss_pred -CCCCEEEEEEC--CCHHHHHHHHHHHHHHHHH
Confidence 22338999998 7889999999999998764
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-21 Score=202.64 Aligned_cols=342 Identities=14% Similarity=0.090 Sum_probs=208.0
Q ss_pred CCeeeecCCCCC-CCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHG-LFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRI 188 (588)
Q Consensus 110 ~~~vyLD~a~~g-l~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~i 188 (588)
++.++|+.+..+ +.++.+.+++.+.+... .++.. . ..|+. ..-..++|+.|
T Consensus 33 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~~~~---------------------~---~~y~~--~~g~~~lr~~l 84 (400)
T 3asa_A 33 HTVINLSIGDTTQPLNASVAEAFASSIARL--SSPTT---------------------C---RGYGP--DFGLPALRQKL 84 (400)
T ss_dssp SCCEECSSCCCCCCCCHHHHHHHHHHHHHH--TSSSC---------------------C---CCCCC--TTCCHHHHHHH
T ss_pred CceEeccCCCCCCCCCHHHHHHHHHHHhcc--ccccc---------------------c---cCCCC--CCCCHHHHHHH
Confidence 567889888765 45677777775554221 11100 0 00111 11135899999
Q ss_pred HHH--hC-CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCE-EEEEeccCCCCcc
Q 037063 189 MDF--MN-ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGAR-VSSAEFAWPNLRI 263 (588)
Q Consensus 189 a~~--lg-a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~-v~~v~~~~~~~~i 263 (588)
+++ .| ++++ .|++|+|+++++.+++.. +++||+|++. ..|+. . ...++..|++ ++.++.+ +++.+
T Consensus 85 a~~l~~g~~~~~--~v~~~~G~~~al~~~~~~--~~~gd~Vl~~~p~y~~-~----~~~~~~~g~~~~~~~~~~-~~~~~ 154 (400)
T 3asa_A 85 SEDFYRGFVDAK--EIFISDGAKVDLFRLLSF--FGPNQTVAIQDPSYPA-Y----LDIARLTGAKEIIALPCL-QENAF 154 (400)
T ss_dssp HHTTSTTSSCGG--GEEEESCHHHHHHHHHHH--HCSSCEEEEEESCCHH-H----HHHHHHTTCSEEEEEECC-GGGTT
T ss_pred HHHHHcCCCCHH--HEEEccChHHHHHHHHHH--cCCCCEEEECCCCcHH-H----HHHHHHcCCcceEecccc-hhcCc
Confidence 999 47 5554 499999999999997754 4789997654 44443 2 3445667998 9999886 22222
Q ss_pred CHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCc-CCCC-CCCCCCCC---
Q 037063 264 HSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATAL-GSKD-MDTLGLSL--- 334 (588)
Q Consensus 264 ~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~-~~~d-~~~l~l~~--- 334 (588)
.. ++++ .+++++|++++++|+||.++|.++ | ++|+++|+++|+|+++. +..+ .....+..
T Consensus 155 ~~-~l~~----------~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 223 (400)
T 3asa_A 155 FP-EFPE----------DTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPD 223 (400)
T ss_dssp CC-CCCT----------TCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTT
T ss_pred cc-Chhh----------ccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCC
Confidence 21 1111 046889999999999999999665 5 78999999999999976 3210 00111111
Q ss_pred -CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhH
Q 037063 335 -FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSK 413 (588)
Q Consensus 335 -~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~ 413 (588)
...++++.|++|.+|.+..++|++++++++...+. . ... .+..... .. ..++.+....
T Consensus 224 ~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~----~--~~~----------~~~~~~~-~~-~~~~~~~~~~--- 282 (400)
T 3asa_A 224 ARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADG----H--FVI----------QDWERFL-ST-TFNGASIPAQ--- 282 (400)
T ss_dssp GGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTS----C--BHH----------HHHHHHH-HH-HCCCCCHHHH---
T ss_pred CCCceEEEecchhhcCCcchheeEEeeChhhccchh----h--hHH----------HHHHHHh-cc-CccCCChHHH---
Confidence 12458899999999842334899999887732111 0 000 0000000 00 1122333222
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEE-eecCCCCCcCHH-
Q 037063 414 LVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFN-VFDWNGTRIDPA- 491 (588)
Q Consensus 414 ~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~-~~~~~g~~i~~~- 491 (588)
+++..+|+ ...++++.++++.+++++.+.|.++ +++++.+ ..+.++.+. +++ + ++..
T Consensus 283 ~a~~~~l~---~~~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~----~~~~~~~~~~~~~--~--~~~~~ 341 (400)
T 3asa_A 283 EAGVAGLS---ILPQLEAIHYYRENSDLLRKALLAT----------GFEVFGG----EHAPYLWVKPTQA--N--ISDRD 341 (400)
T ss_dssp HHHHHHHH---HTTTCHHHHHHHHHHHHHHHHHHHT----------TCEEEEC----SSSSEEEEECCCT--T--CCTTT
T ss_pred HHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHC----------CCeeeCC----CCceEEEEeccCC--C--CCHHH
Confidence 23334443 3246788889999999999999884 3455554 235666666 542 1 2333
Q ss_pred HHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 492 LVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 492 ~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.+.++++++||.+++|..|.+ .+.++||+| ++++.||++++++.|+++++.
T Consensus 342 ~~~~l~~~~gv~v~~g~~f~~------------------------~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~ 392 (400)
T 3asa_A 342 LFDFFLREYHIAITPGIGFGR------------------------SGSGFVRFS--SLGKREDILAACERLQMAPAL 392 (400)
T ss_dssp HHHHHHHHHSEECEEGGGGCG------------------------GGTTCEEEE--CCSCHHHHHHHHHHHHC----
T ss_pred HHHHHHHhCCEEEeChhHhCC------------------------CCCCEEEEE--eeCCHHHHHHHHHHHHHHHHh
Confidence 345566777999999866531 111289999 478999999999999988754
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-20 Score=200.80 Aligned_cols=319 Identities=12% Similarity=0.028 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
....++|+.|+++++.+ .++||+|+|+|+.+++.++ +++|| |+....|+... ...++..|++++.++++.
T Consensus 75 ~~~~~l~~~la~~~~~~----~~~~~~~gt~a~~~al~~l-~~~gd-i~~~~~~~~~~----~~~~~~~G~~~~~v~~~~ 144 (456)
T 2ez2_A 75 ENFYHLERTVQELFGFK----HIVPTHQGRGAENLLSQLA-IKPGQ-YVAGNMYFTTT----RYHQEKNGAVFVDIVRDE 144 (456)
T ss_dssp HHHHHHHHHHHHHHCCS----EEEEESSHHHHHHHHHHHH-CCTTC-EEEESSCCHHH----HHHHHHTTCEEEECBCGG
T ss_pred hhHHHHHHHHHHHhCCC----cEEEeCCcHHHHHHHHHHh-CCCCC-Eeccccccchh----HHHHHHcCCEEEEecccc
Confidence 34568999999999984 4999999999999999998 89999 87777774422 234466899999998862
Q ss_pred C---------CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCC-CCCccCC---HHHH-HHHHHcCcEEEEeCCCcCC
Q 037063 259 P---------NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSK-VTGARYS---YMWM-SVAAEKGWHVLLDATALGS 324 (588)
Q Consensus 259 ~---------~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn-~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~ 324 (588)
. ++.+|+++|+++|+.. ...+.++|++++++| +||..+| +++| ++|+++|+++|+|+++..+
T Consensus 145 ~~~~~~~~~~~~~~d~~~l~~~i~~~----t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g 220 (456)
T 2ez2_A 145 AHDAGLNIAFKGDIDLKKLQKLIDEK----GAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVE 220 (456)
T ss_dssp GGCTTCCCSCTTCBCHHHHHHHHHHH----CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHH
T ss_pred cccccccccccCCCCHHHHHHHHHhc----cccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEcccccc
Confidence 1 2578999999999720 012348999998988 9999998 7788 9999999999999997752
Q ss_pred ---------CCCCCCCC------CCCCCcEEEeccCccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcc
Q 037063 325 ---------KDMDTLGL------SLFKPDFLICSFYKIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEI 388 (588)
Q Consensus 325 ---------~d~~~l~l------~~~~~D~vv~S~~K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~ 388 (588)
.......+ ....+|++++|++|+++. | ..|+++.+ +++++.+........+.
T Consensus 221 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~-~-~gG~~~~~~~~~~~~~~~~~~~~~~~---------- 288 (456)
T 2ez2_A 221 NAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLV-N-IGGFLCMNDDEMFSSAKELVVVYEGM---------- 288 (456)
T ss_dssp HHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCC-S-SCEEEEESCHHHHHHHHHHHHHHTCC----------
T ss_pred ccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCC-C-ceeEEEECCHHHHHHHHHHHhhccCc----------
Confidence 11111110 001279999999998773 4 46888884 56665554321100000
Q ss_pred cccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCC
Q 037063 389 IELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKV 468 (588)
Q Consensus 389 ~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~ 468 (588)
. ..+..+...+ .++ ++..++.+. +...++.+.+.+++.+.|.++ +++++.|
T Consensus 289 ---------~--~~~~~~~~~~---~a~--a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~----------g~~~~~p-- 339 (456)
T 2ez2_A 289 ---------P--SYGGLAGRDM---EAM--AIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA----------GVPIVEP-- 339 (456)
T ss_dssp ---------T--TTTTCCHHHH---HHH--HHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT----------TCCBCSS--
T ss_pred ---------c--cccCcchhHH---HHH--HHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC----------CCccccC--
Confidence 0 0111111121 221 333334433 456677788889999999874 2333343
Q ss_pred CCCcccEEEEEeec----CCCCCcCHHHHHHHH-HhCCcEec-cccccCcccccchHHHHHHHHhhhcCCCCCcCCccEE
Q 037063 469 MFDRGPSLAFNVFD----WNGTRIDPALVQKLA-DRHNISLS-CGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVV 542 (588)
Q Consensus 469 ~~~rg~iv~f~~~~----~~g~~i~~~~v~~~l-~~~gI~v~-~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~v 542 (588)
..+..+.+.+.. .+...+....+.+.| .++||.+. .|.+|.+.. ..+ .. ....+...|
T Consensus 340 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~-~~~--------g~-----~~~~~~~~i 403 (456)
T 2ez2_A 340 --VGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRN-NVT--------GE-----HHRPKLETV 403 (456)
T ss_dssp --CCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBC-TTT--------CS-----BCCCSCCEE
T ss_pred --CCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccC-ccc--------cc-----cccCCCCeE
Confidence 235555555531 111111112224334 78899864 354432100 000 00 000122389
Q ss_pred EEecCCC-CCHHHHHHHHHHHHHhhhh
Q 037063 543 TAALGCL-TNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 543 RvSlg~~-~t~eDv~~li~~l~~~l~~ 568 (588)
|+|++.. ++.|||+++++.|++++++
T Consensus 404 Ris~~~~~~t~e~i~~~~~~l~~~l~~ 430 (456)
T 2ez2_A 404 RLTIPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp EEECCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999987 8999999999999998875
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=207.78 Aligned_cols=315 Identities=10% Similarity=0.038 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCC----CCCe---EEEcCCCchhHHHHHHHHHHhcCCEEE
Q 037063 180 LESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFY----SNPR---LLTVYDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 180 ~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~----~gd~---ll~~~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
...++|++|+++++.+ .|+||+|+|+|+.+++.++ .+ +||+ |++...|+... ....+..|++++
T Consensus 77 ~~~~l~~~la~~~~~~----~v~~t~ggt~A~~~al~~~-~~~~~~~Gd~~~~viv~~~~~~~~----~~~~~~~g~~~~ 147 (467)
T 1ax4_A 77 NYYDLKDKAKELFNYD----YIIPAHQGRGAENILFPVL-LKYKQKEGKAKNPVFISNFHFDTT----AAHVELNGCKAI 147 (467)
T ss_dssp HHHHHHHHHHHHHCCC----EEEEESSHHHHHHHHHHHH-HHHHHHTTCCSSCEEEESSCCHHH----HHHHHHTTCEEE
T ss_pred cHHHHHHHHHHHcCCC----cEEEcCCcHHHHHHHHHHH-HHhhccCCCccceEEEeccccchh----hHHHhccCCcee
Confidence 4568999999999972 4999999999999999988 67 8998 77665554322 233455788888
Q ss_pred EEeccC---------CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCC-CccCCHH---HH-HHHHHcCcEEEEe
Q 037063 253 SAEFAW---------PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVT-GARYSYM---WM-SVAAEKGWHVLLD 318 (588)
Q Consensus 253 ~v~~~~---------~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~t-G~~~pl~---~I-~~a~~~g~~vvvD 318 (588)
.++.+. .++.+|+++|+++|+.. ..+++++|++++++|++ |..+|.+ +| ++|+++|+++|+|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~----~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~D 223 (467)
T 1ax4_A 148 NIVTEKAFDSETYDDWKGDFDIKKLKENIAQH----GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMD 223 (467)
T ss_dssp ECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHH----CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred cccccccccccccCCcccccCHHHHHHHHHhc----CCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEE
Confidence 775431 13568999999999721 11368999999999999 8888765 56 8999999999999
Q ss_pred CCCcC-----------CCCCCCCCCCC------CCCcEEEeccCccCCCCCCceEEEEEe-C-cchhcccCCCC--CCCc
Q 037063 319 ATALG-----------SKDMDTLGLSL------FKPDFLICSFYKIFGENPSGFGCLFVK-K-SSASVLSGSTS--SVST 377 (588)
Q Consensus 319 aa~~~-----------~~d~~~l~l~~------~~~D~vv~S~~K~~G~~P~G~G~L~v~-~-~~~~~l~~~~~--g~~g 377 (588)
+++.. +. ...++.. ..+|++++|+||.+|. |.| |+++.+ + ++++.+..... + +
T Consensus 224 e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~s~sK~~g~-~~G-g~~~~~d~~~l~~~~~~~~~~~~--~ 297 (467)
T 1ax4_A 224 SARFCENAYFIKARDPKY--KNATIKEVIFDMYKYADALTMSAKKDPLL-NIG-GLVAIRDNEEIFTLARQRCVPME--G 297 (467)
T ss_dssp CTTHHHHHHHHHHHCGGG--TTCCHHHHHHHHGGGCSEEEEETTSTTCC-SSC-EEEEESSCHHHHHHHHHHHHHHT--C
T ss_pred chhhhhcchhcccccccc--CCCchhhhhhhhccccceEEEeccccCCC-Ccc-eEEEeCCHHHHHHHHHhhccccc--c
Confidence 98654 21 1111100 1278999999999995 545 777777 5 66655432210 1 0
Q ss_pred eEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCC
Q 037063 378 IMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETG 457 (588)
Q Consensus 378 ~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g 457 (588)
. . +.|+.+...+ +++..+++...+ +...++...+++++.+.|.+.
T Consensus 298 ~--------------------~-~~~~~~~~~~---~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~-------- 342 (467)
T 1ax4_A 298 F--------------------V-TYGGLAGRDM---AAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLREA-------- 342 (467)
T ss_dssp S--------------------T-TTTTCCHHHH---HHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHT--------
T ss_pred c--------------------c-ccCCccchHH---HHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHhC--------
Confidence 0 0 1222222221 233334543211 122233345667788888762
Q ss_pred CCeEEEeCCCCCCCcccEEEEEeec----CCCCCcCHHHHHHHH-HhCCcEecc-ccccCcccccchHHHHHHHHhhhcC
Q 037063 458 IPLVRIYGPKVMFDRGPSLAFNVFD----WNGTRIDPALVQKLA-DRHNISLSC-GFLQNIFFSGEYEQERVRVLETRSG 531 (588)
Q Consensus 458 ~~~v~i~~p~~~~~rg~iv~f~~~~----~~g~~i~~~~v~~~l-~~~gI~v~~-G~~c~~~~~~~~~~~~~~~l~~~~~ 531 (588)
+++++.| .++..+.+.+.. ..+..++...+.+.| .++||.+++ |.++..... ..+
T Consensus 343 --~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~-----------~~g-- 403 (467)
T 1ax4_A 343 --GIPIQYP----TGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDP-----------ATG-- 403 (467)
T ss_dssp --TCCBCSS----CCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCT-----------TTC--
T ss_pred --CCCcccC----CCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCcccccccc-----------ccc--
Confidence 2333333 245555555210 000113345566666 889999987 643210000 000
Q ss_pred CCCCcCCccEEEEecCCC-CCHHHHHHHHHHHHHhhhh
Q 037063 532 TNETRSGVSVVTAALGCL-TNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 532 ~~~~~~g~~~vRvSlg~~-~t~eDv~~li~~l~~~l~~ 568 (588)
.....+...||+|++.+ +|.+||+++++.|+++++.
T Consensus 404 -~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 440 (467)
T 1ax4_A 404 -EQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEK 440 (467)
T ss_dssp -SBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred -cccccccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 00001124999999944 8999999999999998865
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=202.28 Aligned_cols=335 Identities=12% Similarity=0.042 Sum_probs=210.0
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
.--+|+|+.+..+..+.+.+++.........++.. | .+. .| ..++|+.++
T Consensus 55 ~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~-----------------Y----~~~---~G------~~~lr~~ia 104 (448)
T 3meb_A 55 GVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKE-----------------Y----PPV---AG------FPLFLEAAQ 104 (448)
T ss_dssp SSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCS-----------------C----CCT---TC------CHHHHHHHH
T ss_pred ecccccCCCCCEechHHHHHHHHHHhhcccCCCCC-----------------C----CCC---cc------hHHHHHHHH
Confidence 55689999999999988888853322001111110 0 000 01 247889999
Q ss_pred HHh-CCC-----CCCceEEE--ecCHHHHHHHHH--HhCCCCCCCeEEEcCCCchhHHHHHHHHHH----hcCCEEEEEe
Q 037063 190 DFM-NIS-----EDDYTLVF--TANQSSAFKLLA--ESYPFYSNPRLLTVYDHENEAAALMIESSK----KRGARVSSAE 255 (588)
Q Consensus 190 ~~l-ga~-----~~e~~vvf--t~g~T~al~lv~--~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~----~~G~~v~~v~ 255 (588)
+++ |.+ +++ |++ |+|+|+|+++++ .++ +.+||+|++....+.+.. ..++ ..|++++.++
T Consensus 105 ~~l~g~~~~~~~~~~--i~~~~t~ggt~al~l~~~~~~~-~~~gd~Vlv~~p~~~~~~----~~~~~~~~~~G~~v~~~~ 177 (448)
T 3meb_A 105 FLMFGKDSKAAQEGR--IASCQSLSGTGSLHIGFEFLHL-WMPKAEFYMPSTTWPNHY----GIYDKVFNKLKVPYKEYT 177 (448)
T ss_dssp HHHHCTTCHHHHTTC--EEEEEESHHHHHHHHHHHHHHH-HCTTCCEEEESSCCTHHH----HHHHHHHCTTTSCCEEEC
T ss_pred HHhcCCCccccCcCc--EEEEECCcHHHHHHHHHHHHHH-hCCCCEEEECCCCCHhHH----HHHHhhHHhCCCeEEEEe
Confidence 887 876 444 999 999999998843 444 678999765544433232 3344 7899999999
Q ss_pred c-cCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCc-CCCCC-
Q 037063 256 F-AWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATAL-GSKDM- 327 (588)
Q Consensus 256 ~-~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~-~~~d~- 327 (588)
. +.. ++.+|+++|++.++. ..++++++++++++|+||..+|.++ | ++|+++|+++++|.+.. +...-
T Consensus 178 ~~~~~~~~~~d~e~l~~~l~~-----~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~ 252 (448)
T 3meb_A 178 YLRKDGELEIDFSNTKKDIQS-----APEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSF 252 (448)
T ss_dssp CBCTTSCSSBCHHHHHHHHHH-----SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCH
T ss_pred ccccccCCCcCHHHHHHHHHh-----CCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCc
Confidence 8 533 478999999999972 1135889999999999999999776 6 88999999999999843 22110
Q ss_pred --CCCCC----CCCCCcEEEeccCccCCCCCCceEEE--EE--------eC-----cchhcccCCCCCCCceEeeecCCC
Q 037063 328 --DTLGL----SLFKPDFLICSFYKIFGENPSGFGCL--FV--------KK-----SSASVLSGSTSSVSTIMGIEPSFS 386 (588)
Q Consensus 328 --~~l~l----~~~~~D~vv~S~~K~~G~~P~G~G~L--~v--------~~-----~~~~~l~~~~~g~~g~v~~~~~~~ 386 (588)
+...+ ......+++.|++|.||.+..++|++ ++ .+ ++++.+....
T Consensus 253 ~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~-------------- 318 (448)
T 3meb_A 253 EADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQI-------------- 318 (448)
T ss_dssp HHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHH--------------
T ss_pred ccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHH--------------
Confidence 00000 11123477889999999322338888 55 32 2322222110
Q ss_pred cccccccccccccccCCCCCccchhhHHHHHHHHHHHH---H--hCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe-
Q 037063 387 EIIELETLDESSQSKFPESSISGVSSKLVECKGLDHAD---A--LGLILISNRARYLINWLANALMNLHHPHSETGIPL- 460 (588)
Q Consensus 387 ~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~---~--~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~- 460 (588)
..++.+...+. ..++..+|+... + ..++.+.++++.+++++++.|.++ |.++
T Consensus 319 --------------~~~~~~~~~~~-~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-------~~~~~ 376 (448)
T 3meb_A 319 --------------RKTWSMSAIHG-AYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR-------KTPGP 376 (448)
T ss_dssp --------------HTTTSSCCHHH-HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCCS
T ss_pred --------------hcccCCccHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------CCCCc
Confidence 01111111110 122223332110 0 125778888999999999999885 2233
Q ss_pred -----EEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCC
Q 037063 461 -----VRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNET 535 (588)
Q Consensus 461 -----v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~ 535 (588)
+.+..| .++++.| .+ ++.+.+.++++++||.+.+|
T Consensus 377 ~~~~~~~~~~~-----~~g~~~~--~~-----~~~~~~~~ll~~~gV~v~~G---------------------------- 416 (448)
T 3meb_A 377 GSKGTWDHILT-----AIGMFTF--TG-----LTPEHVDYLKEKWSIYLVKA---------------------------- 416 (448)
T ss_dssp TTTCCCTHHHH-----CCSSEEE--CC-----CCHHHHHHHHHHHCEEECSG----------------------------
T ss_pred CcccccceeCC-----CceEEEe--cC-----CCHHHHHHHHHhCCEEEeCC----------------------------
Confidence 222222 2344333 23 44677788889999998766
Q ss_pred cCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 536 RSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 536 ~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
. .|+|++..++ ++|+++++.|+++++.
T Consensus 417 -~----gRis~a~~~~-~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 417 -G----GRMSMCGLTE-SNCDYVAEAIHDAVTK 443 (448)
T ss_dssp -G----GEEEGGGCCT-TTHHHHHHHHHHHHHH
T ss_pred -C----cEEEEecCCH-HHHHHHHHHHHHHHHh
Confidence 1 3899875544 6699999999998863
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-20 Score=198.97 Aligned_cols=349 Identities=11% Similarity=0.034 Sum_probs=218.5
Q ss_pred CCCCCCCHHHHHHhhhhccc-CcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH-HHHHHHHHhCCC
Q 037063 118 IGHGLFSYSQMHSCSSNVHS-SAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK-IRKRIMDFMNIS 195 (588)
Q Consensus 118 a~~gl~~~~~~~~~~~~~~~-~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~-~r~~ia~~lga~ 195 (588)
++..++++.+++++.+.+.. ...++| .+....|....+..++ +|+++++++|++
T Consensus 52 ~~~~~~~~~v~~a~~~~~~~~~~~g~~------------------------~~~~~~g~~~~~~~e~~a~~~la~~~g~~ 107 (447)
T 3h7f_A 52 ASENFVPRAVLQAQGSVLTNKYAEGLP------------------------GRRYYGGCEHVDVVENLARDRAKALFGAE 107 (447)
T ss_dssp TTCCCCCHHHHHHHTSGGGGCCCCEET------------------------TEESSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCCCHHHHHHHHHHhcCCccccCC------------------------cccccCccHHHHHHHHHHHHHHHHHcCCC
Confidence 45567799999998665531 112222 1111112222223344 449999999996
Q ss_pred CCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHH-HHHHHhcCCEEEEEeccCCCCccCHHHHHHHHh
Q 037063 196 EDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALM-IESSKKRGARVSSAEFAWPNLRIHSGKLMKKIV 273 (588)
Q Consensus 196 ~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~-~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i~ 273 (588)
. ..+++.|+|+|+..++.++ +++||+|++ ...|++....+. ... ...+..+..++++.+++.+|.++|++++.
T Consensus 108 ~---~~v~~~sGs~a~~~a~~~~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~d~~~l~~~i~ 182 (447)
T 3h7f_A 108 F---ANVQPHSGAQANAAVLHAL-MSPGERLLGLDLANGGHLTHGMRLNF-SGKLYENGFYGVDPATHLIDMDAVRATAL 182 (447)
T ss_dssp E---EECCCSSHHHHHHHHHHHH-CCTTCEEEEECGGGTCCGGGTCTTSH-HHHSSEEEEECCCTTTCSCCHHHHHHHHH
T ss_pred c---eEEEeCCHHHHHHHHHHHh-cCCCCEEEecCcccccccchhhhhhh-cCCeeEEEEcCcCcccCCcCHHHHHHHHH
Confidence 3 3554788899999999998 899999764 344432111110 011 12356677777765567899999999996
Q ss_pred hhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-----CCCCCCCCCCCCCcEEEeccCcc
Q 037063 274 GKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS-----KDMDTLGLSLFKPDFLICSFYKI 347 (588)
Q Consensus 274 ~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~-----~d~~~l~l~~~~~D~vv~S~~K~ 347 (588)
. .++++|++...+|+++. ++++| ++|+++|+++|+|+++..+ .....+ ..+|+++.|+||.
T Consensus 183 ~-------~~~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~----~~~di~~~s~sK~ 249 (447)
T 3h7f_A 183 E-------FRPKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV----PHADVVSTTVHKT 249 (447)
T ss_dssp H-------HCCSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST----TTCSEEEEESSGG
T ss_pred h-------cCCeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC----CCCcEEEecCCcC
Confidence 2 35789999888887776 99999 9999999999999997553 111112 1379999999997
Q ss_pred CCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhC
Q 037063 348 FGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALG 427 (588)
Q Consensus 348 ~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G 427 (588)
+|. |.| |+++.++++++.+......+ ..|+++...+ +++..++..+...+
T Consensus 250 l~G-~~g-G~i~~~~~~~~~l~~~~~~~-------------------------~~~~~~~~~~---~a~~~a~~~~~~~~ 299 (447)
T 3h7f_A 250 LGG-GRS-GLIVGKQQYAKAINSAVFPG-------------------------QQGGPLMHVI---AGKAVALKIAATPE 299 (447)
T ss_dssp GCC-CSC-EEEEECGGGHHHHHHHHTTT-------------------------TCSSCCHHHH---HHHHHHHHHTTSHH
T ss_pred CCC-CCe-EEEEECHHHHHHHhhhcCCc-------------------------ccCCccHHHH---HHHHHHHHHhhCHH
Confidence 763 776 99999988776554322110 1223333222 45556665543324
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccc
Q 037063 428 LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCG 507 (588)
Q Consensus 428 ~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G 507 (588)
++.+.+++..+++++.+.|.++.. ..++++++.+. ..+.++.+.+... .++...+.++|++.||.++..
T Consensus 300 ~~~~~~~~~~~~~~l~~~L~~~~~-----~~~g~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~l~~~GI~v~~~ 368 (447)
T 3h7f_A 300 FADRQRRTLSGARIIADRLMAPDV-----AKAGVSVVSGG---TDVHLVLVDLRDS---PLDGQAAEDLLHEVGITVNRN 368 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHH-----HHTTCEEGGGS---CSSSEEEEECTTS---SCCHHHHHHHHHHTTEECBC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-----cCCCeEEecCC---CCCCEEEEEcCCC---CCCHHHHHHHHHHCCeEEecc
Confidence 577888888888999888876200 00245555421 2345555555431 256778889999999998732
Q ss_pred cccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC----CCHHHHHHHHHHHHHhhhhh
Q 037063 508 FLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL----TNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 508 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~----~t~eDv~~li~~l~~~l~~~ 569 (588)
... +.. ... .....+|+++... .+++|++++++.|.+.|+..
T Consensus 369 ~i~--~~~-------~~p-----------~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 369 AVP--NDP-------RPP-----------MVTSGLRIGTPALATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp --------------------------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred cCC--CCC-------CCC-----------CCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 100 000 000 1112799998655 46899999999999987653
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=200.44 Aligned_cols=332 Identities=12% Similarity=0.079 Sum_probs=205.7
Q ss_pred CCeeeecCCCCC-CCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHG-LFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRI 188 (588)
Q Consensus 110 ~~~vyLD~a~~g-l~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~i 188 (588)
++.++|+.+-.. +.|+.+++++.+.+.. .++.+.. ..|+. ..-..++|+.|
T Consensus 56 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~~~~~------------------------~~y~~--~~g~~~l~~~i 107 (432)
T 3ei9_A 56 AQVISLGIGDTTEPIPEVITSAMAKKAHE--LSTIEGY------------------------SGYGA--EQGAKPLRAAI 107 (432)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHHHH--TTSTTTC------------------------CCCCC--TTCCHHHHHHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhc--ccccCCc------------------------cCCCC--CCCCHHHHHHH
Confidence 467888877555 4677888887665532 1221100 00111 11124677888
Q ss_pred HHHh----CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcC---------CEEEEE
Q 037063 189 MDFM----NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRG---------ARVSSA 254 (588)
Q Consensus 189 a~~l----ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G---------~~v~~v 254 (588)
++++ ++++++ |+||+|+++++.++ ..+ +++||+|++ ...|++ .... ...+...| .+++.+
T Consensus 108 a~~~~~~~~~~~~~--i~~t~G~~~al~~l-~~l-~~~gd~Vl~~~p~y~~-~~~~-~~~~g~~~~~~~~~~~~~~~~~~ 181 (432)
T 3ei9_A 108 AKTFYGGLGIGDDD--VFVSDGAKCDISRL-QVM-FGSNVTIAVQDPSYPA-YVDS-SVIMGQTGQFNTDVQKYGNIEYM 181 (432)
T ss_dssp HHHHHTTTTCCGGG--EEEESCHHHHHHHH-HHH-HCTTCCEEEEESCCTH-HHHH-HHHHTCSCCEETTTTEETTCEEE
T ss_pred HHHHHccCCCCcce--EEECCChHHHHHHH-HHH-cCCCCEEEEeCCCCHH-HHHH-HHHcCCcccccccccccCceEEe
Confidence 8876 776654 99999999999986 556 689999765 445553 3332 23333333 367888
Q ss_pred eccCCC-CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcCC-----
Q 037063 255 EFAWPN-LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALGS----- 324 (588)
Q Consensus 255 ~~~~~~-~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~~----- 324 (588)
+++..+ ...+ +++ .+++++|++++++|+||..+|.+++ ++|+++|+++|+|+++...
T Consensus 182 ~~~~~~~~~~~---l~~----------~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~ 248 (432)
T 3ei9_A 182 RCTPENGFFPD---LST----------VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN 248 (432)
T ss_dssp ECCGGGTTSCC---GGG----------CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC
T ss_pred ccCcccCCcCC---hhh----------CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC
Confidence 876221 1222 211 1578999999999999999997765 5699999999999997632
Q ss_pred -CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcch--------hcccCCCCCCCceEeeecCCCccccccccc
Q 037063 325 -KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSA--------SVLSGSTSSVSTIMGIEPSFSEIIELETLD 395 (588)
Q Consensus 325 -~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~--------~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~ 395 (588)
..+..+. .....++++.|++|.||.++.++|+++++++.+ +.+....
T Consensus 249 ~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 304 (432)
T 3ei9_A 249 PRSIFEIP-GAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRII----------------------- 304 (432)
T ss_dssp CSSGGGST-TGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHH-----------------------
T ss_pred CCChhhcC-CCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHh-----------------------
Confidence 1111111 112357999999999984345589999988772 2221110
Q ss_pred ccccccCCCCCccchhhHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 396 ESSQSKFPESSISGVSSKLVECKGLDH-ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 396 ~~~f~e~GT~~~~~~~~~~al~~aL~~-l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
.+ ..++.+..+. .+..+++.. ... .++.+.++++.+++++.+.|.++ +++++.+ ..+.
T Consensus 305 --~~-~~~~~~~~~~---~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~----------g~~~~~~----~~~~ 363 (432)
T 3ei9_A 305 --CT-CFNGASNISQ---AGALACLTPEGLE-AMHKVIGFYKENTNIIIDTFTSL----------GYDVYGG----KNAP 363 (432)
T ss_dssp --HH-SCCCSCHHHH---HHHHHHSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHT----------TCCEEEC----SSSS
T ss_pred --cc-ccCCCCHHHH---HHHHHHHhcccHH-HHHHHHHHHHHHHHHHHHHHHHC----------CceecCC----Ccce
Confidence 00 1112222221 222334321 111 25778888899999999999885 2445543 2356
Q ss_pred EEEEEeecCCCCCcCHHH-HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHH
Q 037063 475 SLAFNVFDWNGTRIDPAL-VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFE 553 (588)
Q Consensus 475 iv~f~~~~~~g~~i~~~~-v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~e 553 (588)
++.+.+.+ .+... +.+++++.||.+++|..|.+ .|.+.||+|+ .++.|
T Consensus 364 ~~~~~~~~-----~~~~~~~~~ll~~~gv~v~~g~~f~~------------------------~~~~~iRis~--~~~~e 412 (432)
T 3ei9_A 364 YVWVHFPN-----QSSWDVFAEILEKTHVVTTPGSGFGP------------------------GGEGFVRVSA--FGHRE 412 (432)
T ss_dssp EEEEECTT-----SCHHHHHHHHHHHHCEECEEGGGGCG------------------------GGTTEEEEEC--CSCHH
T ss_pred EEEEECCC-----CCHHHHHHHHHHHCCEEEeCchHhCC------------------------CCCCEEEEEe--cCCHH
Confidence 66666653 34544 45667778999999866531 1223999996 56999
Q ss_pred HHHHHHHHHHH
Q 037063 554 DTYRLWAFVSR 564 (588)
Q Consensus 554 Dv~~li~~l~~ 564 (588)
+|+++++.|++
T Consensus 413 ~l~~~l~rl~~ 423 (432)
T 3ei9_A 413 NILEACRRFKQ 423 (432)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999876
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-19 Score=195.34 Aligned_cols=160 Identities=11% Similarity=0.066 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....++++++|++++|.+ . .++++|+++|+.+++.++ +++||+|++ ...|++ ....+...++..|++++.++.
T Consensus 81 ~p~~~~le~~lA~l~g~~---~-~v~~~sG~~Ai~~al~al-~~~Gd~Vi~~~~~y~~-~~~~~~~~~~~~G~~~~~v~~ 154 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLTGAL---G-VLALGSGMAAISTAILTL-ARAGDSVVTTDRLFGH-TLSLFQKTLPSFGIEVRFVDV 154 (430)
T ss_dssp CHHHHHHHHHHHHHHTCS---E-EEEESCHHHHHHHHHHHH-CCTTCEEEEETTCCHH-HHHHHHTHHHHTTCEEEEECT
T ss_pred CHHHHHHHHHHHHHHCCC---c-EEEECCHHHHHHHHHHHH-hCCCCEEEEcCCCchh-HHHHHHHHHHHcCCEEEEeCC
Confidence 456789999999999984 2 566667789999999998 899999765 455554 443334466788999999987
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ |+++|+++|+ +++++|++++++|++|.+.|+++| ++|+++|+++|+|+++..+....++ ..
T Consensus 155 ~------d~~~l~~ai~--------~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~~~~~---~~ 217 (430)
T 3ri6_A 155 M------DSLAVEHACD--------ETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAK---RL 217 (430)
T ss_dssp T------CHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTCCGG---GG
T ss_pred C------CHHHHHHhhC--------CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCChH---Hc
Confidence 4 7899999997 789999999999999999999999 9999999999999998877322222 23
Q ss_pred CCcEEEeccCccCCCCCCceEEEEE
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFV 360 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v 360 (588)
++|+++.|++|++|.+..++|.+++
T Consensus 218 g~div~~S~sK~l~g~g~~~gG~vv 242 (430)
T 3ri6_A 218 GVDIEVLSSTKFISGGGTSVGGVLI 242 (430)
T ss_dssp TCSEEEEECCCEEETTEEECCEEEE
T ss_pred CCEEEEECCcccccCCCCceEEEEE
Confidence 4899999999988721123555555
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.2e-21 Score=199.90 Aligned_cols=295 Identities=14% Similarity=0.040 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEeccCC
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFAWP 259 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~ 259 (588)
.+++++.+++++|+++. ..+++|+|+|+|+.+++.++ +||+|++ ...|++ .... ...++..|++++.+ .
T Consensus 60 ~~~~~~~~a~~~g~~~~-~~~~~~~ggt~a~~~~~~~~---~gd~Vl~~~~~y~~-~~~~-~~~~~~~g~~~~~v-~--- 129 (374)
T 2aeu_A 60 AEKVNEYGLKHLGGDEN-DKCVGFNRTSSAILATILAL---KPKKVIHYLPELPG-HPSI-ERSCKIVNAKYFES-D--- 129 (374)
T ss_dssp HHHHHHHHHHHHTCCTT-EEEEEESSHHHHHHHHHHHH---CCSEEEEECSSSSC-CTHH-HHHHHHTTCEEEEE-S---
T ss_pred HHHHHHHHHHHhCCCCc-ceEEEEcChHHHHHHHHHhC---CCCEEEEecCCCCc-cHHH-HHHHHHcCcEEEEe-C---
Confidence 45777788899998521 34999999999999999986 8999664 444443 2222 22556789999887 2
Q ss_pred CCccCHHHHHHHHhhhccccCCCcceE-EEEeCCCCCCC-ccCCHHHH-HHHHHcCcEEEEeCCCcCCC---CCC--CCC
Q 037063 260 NLRIHSGKLMKKIVGKRKKKKKKKRGL-FVFPLQSKVTG-ARYSYMWM-SVAAEKGWHVLLDATALGSK---DMD--TLG 331 (588)
Q Consensus 260 ~~~i~~e~l~~~i~~~~~~~~~~~t~L-v~~~~~sn~tG-~~~pl~~I-~~a~~~g~~vvvDaa~~~~~---d~~--~l~ 331 (588)
|+++|+++ + +++++ |++++++|+|| ...++++| ++|+++|+++|+|+++.... ... .++
T Consensus 130 ----d~~~l~~~-~--------~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~ 196 (374)
T 2aeu_A 130 ----KVGEILNK-I--------DKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALK 196 (374)
T ss_dssp ----CHHHHHTT-C--------CTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHH
T ss_pred ----CHHHHHhc-C--------CCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccc
Confidence 66777766 4 67999 99999999999 88899999 99999999999999865431 001 111
Q ss_pred CCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchh
Q 037063 332 LSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVS 411 (588)
Q Consensus 332 l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~ 411 (588)
+.+|+++.|+||+++ +.++|++++++++++.+...... + .++++...
T Consensus 197 ---~~~di~~~S~sK~l~--g~~~G~~~~~~~~~~~l~~~~~~------------------------~--~~~~~~~~-- 243 (374)
T 2aeu_A 197 ---LGADLVVTSTDKLME--GPRGGLLAGKKELVDKIYIEGTK------------------------F--GLEAQPPL-- 243 (374)
T ss_dssp ---HTCSEEEEETTSSSS--SCSCEEEEEEHHHHHHHHHHHHT------------------------T--TCBCCHHH--
T ss_pred ---cCCcEEEecCccccc--CcceEEEEECHHHHHHHHHhhcc------------------------c--cCCCCHHH--
Confidence 238999999999876 33889999999887766432210 0 11122211
Q ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHH----HHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCC
Q 037063 412 SKLVECKGLDHADALGLILISNRARYL----INWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTR 487 (588)
Q Consensus 412 ~~~al~~aL~~l~~~G~~~i~~r~~~L----~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~ 487 (588)
.+++..+|+.+...-++.+.++.+.+ .+.+.+.|..+. ..+++.+..+ ..+.++.+ ..... .
T Consensus 244 -~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~------~~~g~~~~~~----~~g~~~~~-~~~~~--~ 309 (374)
T 2aeu_A 244 -LAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAID------DNINIVYERT----PTGFVIKR-VYKDD--T 309 (374)
T ss_dssp -HHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTC------TTEEEEEEEC----SSEEEEEE-EESSH--H
T ss_pred -HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hccCcceeeC----CceEEEEe-ecccc--c
Confidence 13444555543110123333444444 455555555420 0034554322 12333222 11100 0
Q ss_pred cC----HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCC-CCCHHHHHHHHHHH
Q 037063 488 ID----PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGC-LTNFEDTYRLWAFV 562 (588)
Q Consensus 488 i~----~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~-~~t~eDv~~li~~l 562 (588)
.+ .+.+.+++.++||.+++|.... .+..++|++++. ..+.++++++.++|
T Consensus 310 ~~~~~~~~~~~~ll~~~gV~v~~g~~~~-------------------------~~~~~lRi~~~~~~~~~~~l~~l~~~l 364 (374)
T 2aeu_A 310 INIKKLIEIGFNLLKNYGIITITVAGMP-------------------------GASKSLRIDLTSRDAERIDDNYIIKAI 364 (374)
T ss_dssp HHHHHHHHHHHHHHHHHCEECSTTSSSC-------------------------SSCCSEEEETTSGGGGGSCHHHHHHHH
T ss_pred ccccchHHHHHHHHHhCCEEEecCCCCC-------------------------CCCCeEEEEcCCchHHHHHHHHHHHHH
Confidence 00 0133467778899998763210 112289999874 22334599999999
Q ss_pred HHhhhhhh
Q 037063 563 SRFLDADF 570 (588)
Q Consensus 563 ~~~l~~~~ 570 (588)
++.+++.+
T Consensus 365 ~~~l~~~~ 372 (374)
T 2aeu_A 365 VESIKMAF 372 (374)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99887654
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-20 Score=196.57 Aligned_cols=331 Identities=12% Similarity=0.015 Sum_probs=208.1
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
.--+|+|+.+..+..+.+.+++.+.... .+++. | .+. .| ..++|+.++
T Consensus 34 ~~g~~~d~~~~~~~~~~v~~a~~~~~~~--~~~~~-----------------Y----~~~---~g------~~~lr~~ia 81 (401)
T 7aat_A 34 GVGAYRDDNGKPYVLNCVRKAEAMIAAK--KMDKE-----------------Y----LPI---AG------LADFTRASA 81 (401)
T ss_dssp CCCSCCCTTSCCCCCHHHHHHHHHHHHT--TCCCC-----------------C----CCT---TC------CHHHHHHHH
T ss_pred eeeeEECCCCCEechHHHHHHHHHhccc--ccccC-----------------C----CCC---CC------CHHHHHHHH
Confidence 5668999999988888888876544321 11210 0 000 01 247888888
Q ss_pred HHhCCC------CCCceEEE--ecCHHHHHHHHHHhCC--CCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC-
Q 037063 190 DFMNIS------EDDYTLVF--TANQSSAFKLLAESYP--FYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW- 258 (588)
Q Consensus 190 ~~lga~------~~e~~vvf--t~g~T~al~lv~~s~~--~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~- 258 (588)
++++.. +++ |++ |+|+|+|+++++.++. .++||+|++....+... ...++..|++++.++++.
T Consensus 82 ~~~~~~~~~~~~~~~--i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~----~~~~~~~g~~~~~~~~~~~ 155 (401)
T 7aat_A 82 ELALGENSEAFKSGR--YVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNH----TPIFRDAGLQLQAYRYYDP 155 (401)
T ss_dssp HHHHCTTCHHHHTTC--EEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTH----HHHHHHTTCEEEEEECEET
T ss_pred HHhcCCCccccccCc--eEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhH----HHHHHHcCCeeEeeeeecc
Confidence 887643 554 877 9999999998877652 37899976544433322 334567899999999852
Q ss_pred CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC-CCCCC-----
Q 037063 259 PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG-SKDMD----- 328 (588)
Q Consensus 259 ~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~-~~d~~----- 328 (588)
.++.+|.+++++.+. + ..+++++|++++++||||..++.++ | ++|+++|+++++|.+... ..+-.
T Consensus 156 ~~~~~d~~~l~~~l~----~-~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~ 230 (401)
T 7aat_A 156 KTCSLDFTGAMEDIS----K-IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAW 230 (401)
T ss_dssp TTTEECHHHHHHHHT----T-SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTH
T ss_pred ccCccCHHHHHHHHH----h-CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHH
Confidence 367899999988886 2 2367899999999999999998655 5 789999999999998432 21100
Q ss_pred CCC--CCCCCCcEEEeccCccCCCCCCceEEEEEeC---cch----hcccCCCCCCCceEeeecCCCccccccccccccc
Q 037063 329 TLG--LSLFKPDFLICSFYKIFGENPSGFGCLFVKK---SSA----SVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQ 399 (588)
Q Consensus 329 ~l~--l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~---~~~----~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f 399 (588)
.+. .......+++.|++|.||.+..++|++++.. +.. ..+.....
T Consensus 231 ~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~-------------------------- 284 (401)
T 7aat_A 231 ALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIR-------------------------- 284 (401)
T ss_dssp HHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHhcCCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHH--------------------------
Confidence 000 0122356889999999993222389999732 211 11111100
Q ss_pred ccCCCCCccchhhHHHHHHHHHH--H----HHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc
Q 037063 400 SKFPESSISGVSSKLVECKGLDH--A----DALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG 473 (588)
Q Consensus 400 ~e~GT~~~~~~~~~~al~~aL~~--l----~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg 473 (588)
.++.+..... ..++..++.. + .+ .++++.++.+.+++++.+.|.++..+ +.++++.| .+
T Consensus 285 --~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~------~~~~~~~~-----~~ 349 (401)
T 7aat_A 285 --PMYSNPPMNG-ARIASLILNTPELRKEWLV-EVKGMADRIISMRTQLVSNLKKEGSS------HNWQHITD-----QI 349 (401)
T ss_dssp --HHHSSCCHHH-HHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTCC------SCCHHHHH-----CC
T ss_pred --hccCCCChHH-HHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC------CCCceecC-----Cc
Confidence 0011111110 0111122211 0 11 15677888889999999999885110 12333322 34
Q ss_pred cEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHH
Q 037063 474 PSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFE 553 (588)
Q Consensus 474 ~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~e 553 (588)
+++.| .+ ++.+.+.++++++||.+.. .+|+|++..++.
T Consensus 350 ~~~~~--~~-----~~~~~~~~ll~~~gi~v~~----------------------------------~~Ris~~~~~~~- 387 (401)
T 7aat_A 350 GMFCF--TG-----LKPEQVERLTKEFSIYMTK----------------------------------DGRISVAGVASS- 387 (401)
T ss_dssp SSEEE--CC-----CCHHHHHHHHHHHCEECCT----------------------------------TCEEEGGGCCTT-
T ss_pred ceEEe--cC-----CCHHHHHHHHHhCCEeccC----------------------------------CCeEEeccCChh-
Confidence 44444 23 4577788888999998742 379999877665
Q ss_pred HHHHHHHHHHHhh
Q 037063 554 DTYRLWAFVSRFL 566 (588)
Q Consensus 554 Dv~~li~~l~~~l 566 (588)
||+++++.|++.+
T Consensus 388 ~i~~~~~~l~~~~ 400 (401)
T 7aat_A 388 NVGYLAHAIHQVT 400 (401)
T ss_dssp THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 4999999998865
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-19 Score=188.97 Aligned_cols=331 Identities=11% Similarity=0.061 Sum_probs=214.3
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|||+.+. |..++.+++++.+.+....++. +. ...+..++
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-----------------------~~--------~~~~~~~~ 82 (395)
T 3nx3_A 34 KAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTS-----------------------NL--------YYNENIAA 82 (395)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCC-----------------------TT--------SBCHHHHH
T ss_pred CCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccc-----------------------cc--------cCCHHHHH
Confidence 56789998765 3347888888866653211100 00 01466789
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-C-----CCCCeEE-EcCCCchhHHHHHH--------HHHHhcC
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-F-----YSNPRLL-TVYDHENEAAALMI--------ESSKKRG 248 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~-----~~gd~ll-~~~e~~s~~~~~~~--------~~a~~~G 248 (588)
++++++++++. + .|+||+|+|+|+.+++..+. . .++++|+ ....||......+. ......+
T Consensus 83 l~~~la~~~~~--~--~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 158 (395)
T 3nx3_A 83 AAKNLAKASAL--E--RVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLI 158 (395)
T ss_dssp HHHHHHHHHTC--S--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCC
T ss_pred HHHHHHHhcCC--C--eEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCC
Confidence 99999999983 3 49999999999999887651 1 3467755 55566643222110 0011223
Q ss_pred CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCc-
Q 037063 249 ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATAL- 322 (588)
Q Consensus 249 ~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~- 322 (588)
..+..++.+ |+++|+++++ +++++|++..++|++|.+.| +++| ++|+++|+++|+|+++.
T Consensus 159 ~~~~~~~~~------d~~~l~~~l~--------~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~ 224 (395)
T 3nx3_A 159 SGVKFAKYN------DISSVEKLVN--------EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCG 224 (395)
T ss_dssp SCEEEECTT------CHHHHHTTCC--------TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred CCcEEeCCC------CHHHHHHhcc--------CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccC
Confidence 456666543 6888988887 67899999999999999988 8999 99999999999999976
Q ss_pred CCCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcc-hhcccCCCCCCCceEeeecCCCccccccccccccc
Q 037063 323 GSKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSS-ASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQ 399 (588)
Q Consensus 323 ~~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~-~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f 399 (588)
++.. ..........+|+++ +.|.+|. +.++|++++++++ ++.+.+...++ + |
T Consensus 225 ~g~~g~~~~~~~~~~~~d~~t--~sK~~~~-G~~~G~~~~~~~~~~~~~~~~~~~~--~--------------------~ 279 (395)
T 3nx3_A 225 MGRSGKFFAYEHAQILPDIMT--SAKALGC-GLSVGAFVINQKVASNSLEAGDHGS--T--------------------Y 279 (395)
T ss_dssp TTTTSSSSGGGGGTCCCSEEE--ECGGGTT-TSCCEEEEECHHHHHHHSCTTCCSS--C--------------------B
T ss_pred CCcCCcchhHHhcCCCCCEEE--ecccccC-CCceEEEEEchhhhhhhcCCcccCC--C--------------------C
Confidence 3211 011111122377765 5597774 5689999999988 77776543321 0 0
Q ss_pred ccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEE
Q 037063 400 SKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFN 479 (588)
Q Consensus 400 ~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~ 479 (588)
+.+..+ .++..++|+.+.. +.+.++.+.+.+++++.|.++... .+.+.... ..+.++.+.
T Consensus 280 ----~~~~~~---~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~-----~~g~~~~~~ 339 (395)
T 3nx3_A 280 ----GGNPLV---CAGVNAVFEIFKE---EKILENVNKLTPYLEQSLDELINE-----FDFCKKRK-----GLGFMQGLS 339 (395)
T ss_dssp ----SCCHHH---HHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHH-----CTTEEEEE-----EETTEEEEE
T ss_pred ----CCCHHH---HHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHh-----CCCeEEEE-----eEEEEEEEE
Confidence 011111 1344466666543 345556666666666666543100 13333221 246788888
Q ss_pred eecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHH
Q 037063 480 VFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLW 559 (588)
Q Consensus 480 ~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li 559 (588)
+.+. .+...+.+.|.++||.++.+. ...||+++++..|.||+++++
T Consensus 340 ~~~~----~~~~~~~~~l~~~Gi~v~~~~------------------------------~~~iRi~~~~~~t~e~i~~~l 385 (395)
T 3nx3_A 340 LDKS----VKVAKVIQKCQENALLLISCG------------------------------ENDLRFLPPLILQKEHIDEMS 385 (395)
T ss_dssp ECTT----SCHHHHHHHHHHTTEECEEET------------------------------TTEEEECCCTTCCHHHHHHHH
T ss_pred eCCc----chHHHHHHHHHHCCCEEecCC------------------------------CCEEEEECCCCCCHHHHHHHH
Confidence 7652 246677777888999988651 128999999999999999999
Q ss_pred HHHHHhhhh
Q 037063 560 AFVSRFLDA 568 (588)
Q Consensus 560 ~~l~~~l~~ 568 (588)
+.|++++++
T Consensus 386 ~~l~~~l~~ 394 (395)
T 3nx3_A 386 EKLRKALKS 394 (395)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998753
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-21 Score=203.07 Aligned_cols=328 Identities=16% Similarity=0.171 Sum_probs=213.0
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhh-hcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSS-NVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRI 188 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~-~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~i 188 (588)
..-.|||+.+..+.++.+.+++.+ .+.. +..+ .|+. ..-..++|+.|
T Consensus 35 ~~g~~~d~~~~~~~~~~v~~a~~~~~~~~---~~~~---------------------------~y~~--~~g~~~lr~~i 82 (412)
T 1yaa_A 35 GIGAYRDDNGKPWVLPSVKAAEKLIHNDS---SYNH---------------------------EYLG--ITGLPSLTSNA 82 (412)
T ss_dssp SSCCCBCTTSCBCCCHHHHHHHHHHHTCT---TCCC---------------------------CCCC--TTCCHHHHHHH
T ss_pred eeeeeeCCCCCCCCcHHHHHHHHhhhcCc---cccc---------------------------CCCC--CCCcHHHHHHH
Confidence 556789999888888999998866 5421 0000 0100 01124788888
Q ss_pred HHHhC------CCCCCceEEE--ecCHHHHHHHHH--HhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec-
Q 037063 189 MDFMN------ISEDDYTLVF--TANQSSAFKLLA--ESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF- 256 (588)
Q Consensus 189 a~~lg------a~~~e~~vvf--t~g~T~al~lv~--~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~- 256 (588)
+++++ +++++ |++ |+|+|+|+.+++ ... +.+||+|++ ...|+. . ...++..|++++.++.
T Consensus 83 a~~~~~~~~~~~~~~~--i~~~~t~g~~~a~~~~~~~~~~-~~~gd~Vl~~~p~~~~-~----~~~~~~~g~~~~~v~~~ 154 (412)
T 1yaa_A 83 AKIIFGTQSDALQEDR--VISVQSLSGTGALHISAKFFSK-FFPDKLVYLSKPTWAN-H----MAIFENQGLKTATYPYW 154 (412)
T ss_dssp HHHHHCTTCHHHHTTC--EEEEEEEHHHHHHHHHHHHHHH-HCTTCCEEEEESCCTT-H----HHHHHTTTCCEEEEECE
T ss_pred HHHHhcCCCCCCCcce--EEEEeccchHhHHHHHHHHHHH-hCCCCEEEEeCCCCcc-H----HHHHHHcCceEEEEeee
Confidence 88883 24554 999 999999999883 233 468999664 444543 2 3455678999999998
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC-CCC-----
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG-SKD----- 326 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~-~~d----- 326 (588)
+..++.+|+++|+++++. . .+.+.++++++++|+||..+|.++ | ++|+++|+++|+|+++.. ..+
T Consensus 155 ~~~~~~~d~~~l~~~l~~----~-~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~ 229 (412)
T 1yaa_A 155 ANETKSLDLNGFLNAIQK----A-PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKD 229 (412)
T ss_dssp ETTTTEECHHHHHHHHHH----S-CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHH
T ss_pred cCCCCccCHHHHHHHHHh----C-CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccch
Confidence 533677999999999972 0 123567777999999999998765 5 789999999999999632 111
Q ss_pred CCCC-CCCCCC----CcEEEeccCccCCCCCCc--eEEEE--E-----eCc----chhcccCCCCCCCceEeeecCCCcc
Q 037063 327 MDTL-GLSLFK----PDFLICSFYKIFGENPSG--FGCLF--V-----KKS----SASVLSGSTSSVSTIMGIEPSFSEI 388 (588)
Q Consensus 327 ~~~l-~l~~~~----~D~vv~S~~K~~G~~P~G--~G~L~--v-----~~~----~~~~l~~~~~g~~g~v~~~~~~~~~ 388 (588)
..++ .+.... .++++.|++|.+| |.| +|+++ . +++ +++.+......
T Consensus 230 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~--~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------------- 293 (412)
T 1yaa_A 230 AYAVRLGVEKLSTVSPVFVCQSFAKNAG--MYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRS-------------- 293 (412)
T ss_dssp THHHHHHHHHTTTTCCEEEEEECTTTSC--CGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHT--------------
T ss_pred hHHHHHHHhcCCCCcceEEEeccCCCCC--CcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhh--------------
Confidence 0011 111111 3578899999999 666 79998 5 444 44433321100
Q ss_pred cccccccccccccCCCCCccchhhHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC-eEE
Q 037063 389 IELETLDESSQSKFPESSISGVSSKLVECKGLDHAD-----ALGLILISNRARYLINWLANALMNLHHPHSETGIP-LVR 462 (588)
Q Consensus 389 ~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~-----~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~-~v~ 462 (588)
..++++.... +++..+|+... ...++++.++.+.+++++.+.|.++ +.+ +++
T Consensus 294 ------------~~~~~~~~~~---~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~ 351 (412)
T 1yaa_A 294 ------------EVSNPPAYGA---KIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKL-------GTPGNWD 351 (412)
T ss_dssp ------------TTSSCCHHHH---HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TCSSCCT
T ss_pred ------------ccCCCChHHH---HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------CCCCCee
Confidence 1112222221 34445555331 1136888889999999999999886 100 233
Q ss_pred EeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEE
Q 037063 463 IYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVV 542 (588)
Q Consensus 463 i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~v 542 (588)
++.| .++++.|. + ++...+.++++++||.++. .+
T Consensus 352 ~~~~-----~~~~~~~~--~-----~~~~~~~~~l~~~gi~v~~----------------------------------~~ 385 (412)
T 1yaa_A 352 HIVN-----QCGMFSFT--G-----LTPQMVKRLEETHAVYLVA----------------------------------SG 385 (412)
T ss_dssp HHHH-----CCSSEEEC--C-----CCHHHHHHHHHHHCEECCT----------------------------------TS
T ss_pred eecc-----CceEEEee--C-----CCHHHHHHHHHhCCEEecc----------------------------------Cc
Confidence 3332 24444432 2 3456678888888998753 37
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 543 TAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 543 RvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
|+|++. .+.+|++++++.|+++++
T Consensus 386 Ris~~~-~~~~~i~~~~~~l~~~~~ 409 (412)
T 1yaa_A 386 RASIAG-LNQGNVEYVAKAIDEVVR 409 (412)
T ss_dssp EEEGGG-CCTTTHHHHHHHHHHHHH
T ss_pred EEEEcc-CCHhHHHHHHHHHHHHHH
Confidence 999985 489999999999999875
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=196.26 Aligned_cols=353 Identities=11% Similarity=0.049 Sum_probs=219.9
Q ss_pred CCeeeecCC------CCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYI------GHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a------~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|+|.+ ..|+.++.+++++.+.+.. . . . + ... + ...+...+
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~-~-~-~-~--------------------~~~-----~-~~~~~~~~ 97 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLST-L-D-Y-S--------------------PGF-----Q-YGHPLSFQ 97 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTT-C-S-C-C--------------------CSS-----S-CCCHHHHH
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHh-C-C-C-c--------------------ccc-----c-cCCHHHHH
Confidence 467899985 3455688999998766532 1 1 1 0 000 0 01356679
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCC--------CCCeEE-EcCCCchhHHHHHHHHHH----hcC--
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFY--------SNPRLL-TVYDHENEAAALMIESSK----KRG-- 248 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~--------~gd~ll-~~~e~~s~~~~~~~~~a~----~~G-- 248 (588)
++++++++++.+++ .|+||+|+|+|+.+++..+ .. ++++|+ ....||......+ .... +.+
T Consensus 98 l~~~la~~~~~~~~--~v~~~~ggsea~~~al~~~-~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~-~~~g~~~~~~~~~ 173 (449)
T 3a8u_X 98 LAEKITDLTPGNLN--HVFFTDSGSECALTAVKMV-RAYWRLKGQATKTKMIGRARGYHGVNIAGT-SLGGVNGNRKLFG 173 (449)
T ss_dssp HHHHHHTTSSTTEE--EEEEESSHHHHHHHHHHHH-HHHHHHTTCTTCCEEEEETTCCCCSSHHHH-HHCCCHHHHTTTC
T ss_pred HHHHHHHhCCCCCC--EEEEcCcHHHHHHHHHHHH-HHHHHhcCCCCCCEEEEECCCcCCCChhhh-hccCChhhccccC
Confidence 99999999987654 4999999999999998876 32 567866 4666765333232 1110 001
Q ss_pred ---CEEEEEeccC--CC--CccC--------HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHH
Q 037063 249 ---ARVSSAEFAW--PN--LRIH--------SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVA 308 (588)
Q Consensus 249 ---~~v~~v~~~~--~~--~~i~--------~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a 308 (588)
..+..++++. .. ..+| +++|+++|++ ...+++++|++..++++||.+.| +++| ++|
T Consensus 174 ~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~----~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~ 249 (449)
T 3a8u_X 174 QPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIEL----HDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREIC 249 (449)
T ss_dssp CCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHH----HCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred CCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHh----cCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHH
Confidence 1345555431 11 0145 8899999872 11135788888888888999999 9999 999
Q ss_pred HHcCcEEEEeCCCc-CCCCCC--CCCCCCCCCcEEEeccCccCCCCC-CceEEEEEeCcchhcccCCCCCCCceEeeecC
Q 037063 309 AEKGWHVLLDATAL-GSKDMD--TLGLSLFKPDFLICSFYKIFGENP-SGFGCLFVKKSSASVLSGSTSSVSTIMGIEPS 384 (588)
Q Consensus 309 ~~~g~~vvvDaa~~-~~~d~~--~l~l~~~~~D~vv~S~~K~~G~~P-~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~ 384 (588)
+++|+++|+|+++. ++..-. .++.....+|++ ++.|.+|. . ..+|++++++++++.+....... ..
T Consensus 250 ~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~~G~~~~~~~~~~~l~~~~~~~-~~------ 319 (449)
T 3a8u_X 250 NQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTN-GAIPMGAVIASTEIYQTFMNQPTPE-YA------ 319 (449)
T ss_dssp HHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSSCCEEEEEEHHHHHHHHTCSSCT-TS------
T ss_pred HHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccC-CCCceEEEEECHHHHHHhhccCccc-cc------
Confidence 99999999999984 442101 111111237876 66798872 1 23899999988877665421100 00
Q ss_pred CCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEe
Q 037063 385 FSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIY 464 (588)
Q Consensus 385 ~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~ 464 (588)
..|...+|.+...+ ..++..++|+.+++ +.+.++++++.+++++.|.++. +.+.+..+
T Consensus 320 ------------~~~~~~~t~~~~~~-~~aa~~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~------~~~~~~~~ 377 (449)
T 3a8u_X 320 ------------VEFPHGYTYSAHPV-ACAAGLAALCLLQK---ENLVQSVAEVAPHFEKALHGIK------GAKNVIDI 377 (449)
T ss_dssp ------------CSSCCCCTTTTCHH-HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHTTT------TSTTEEEE
T ss_pred ------------ccccccCCCcccHH-HHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHh------cCCCeEEE
Confidence 01101223222222 12455577777665 3567888899999999998752 12333221
Q ss_pred CCCCCCCcccEEEEEeecCCCCC-cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEE
Q 037063 465 GPKVMFDRGPSLAFNVFDWNGTR-IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVT 543 (588)
Q Consensus 465 ~p~~~~~rg~iv~f~~~~~~g~~-i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vR 543 (588)
. ..|.++.+.+.+..... .++..+.+.|.++||.++.+ . ..||
T Consensus 378 ~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-----------------------------g--~~iR 421 (449)
T 3a8u_X 378 R-----NFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFG-----------------------------G--DTLQ 421 (449)
T ss_dssp E-----EETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEE-----------------------------T--TEEE
T ss_pred e-----eeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecC-----------------------------C--CEEE
Confidence 1 24678888876421100 01234666666779998864 1 2899
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 544 AALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 544 vSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+|+++.++.+|++++++.|++++++
T Consensus 422 is~~~~~t~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 422 FGPTFNSKPQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-19 Score=188.92 Aligned_cols=330 Identities=10% Similarity=0.081 Sum_probs=216.9
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|..+..|+|..+. |..++.+++++.+.+.... +. | +. + ..+..
T Consensus 72 d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~--~~-~--------------------~~-----~---~~~~~ 120 (439)
T 2oat_A 72 DVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLT--LT-S--------------------RA-----F---YNNVL 120 (439)
T ss_dssp ETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCS--CC-C--------------------TT-----S---EESSH
T ss_pred ECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcC--cc-c--------------------Cc-----c---CCHHH
Confidence 3357789998762 2256788888866653211 11 0 00 0 02345
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--------CCCC-CeEE-EcCCCchhHHHHHHHHHHhcC---
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--------FYSN-PRLL-TVYDHENEAAALMIESSKKRG--- 248 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--------~~~g-d~ll-~~~e~~s~~~~~~~~~a~~~G--- 248 (588)
.++++++++++|. + .|+|++|+++|+.+++..+. ..+| ++|+ ....||......+ ...|
T Consensus 121 ~~l~~~la~~~g~--~--~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~----~~~g~~~ 192 (439)
T 2oat_A 121 GEYEEYITKLFNY--H--KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAI----SSSTDPT 192 (439)
T ss_dssp HHHHHHHHHHHTC--S--EEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHH----TTCCCHH
T ss_pred HHHHHHHHHhcCC--C--EEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHh----hcCCChh
Confidence 6888999999974 3 49999999999999888752 1356 6755 5556665333221 1222
Q ss_pred ---------CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccC----CHHHH-HHHHHcCcE
Q 037063 249 ---------ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARY----SYMWM-SVAAEKGWH 314 (588)
Q Consensus 249 ---------~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~----pl~~I-~~a~~~g~~ 314 (588)
..+..+|.+ |.++|+++|.. +++++|++..+++++|.+. ++++| ++|+++|++
T Consensus 193 ~~~~~~p~~~~v~~~~~~------d~~~le~~l~~-------~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gil 259 (439)
T 2oat_A 193 SYDGFGPFMPGFDIIPYN------DLPALERALQD-------PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVL 259 (439)
T ss_dssp HHTTSCSCCTTEEEECSS------CHHHHHHHTTS-------TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCE
T ss_pred cccCCCCCCCCeEEeCCC------CHHHHHHHhCC-------CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 456666542 78999998841 5688999988888899887 69999 999999999
Q ss_pred EEEeCCCcC-CCCCC--CCCCCCCCCcEEEeccCccCCCCC-CceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccc
Q 037063 315 VLLDATALG-SKDMD--TLGLSLFKPDFLICSFYKIFGENP-SGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIE 390 (588)
Q Consensus 315 vvvDaa~~~-~~d~~--~l~l~~~~~D~vv~S~~K~~G~~P-~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~ 390 (588)
+|+|+++.. +..-. .++.....+|++ ++.|.+|. + ..+|++++++++++.+.+...+ +
T Consensus 260 lI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~-G~~~~G~v~~~~~~~~~l~~~~~~--~------------- 321 (439)
T 2oat_A 260 FIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSG-GLYPVSAVLCDDDIMLTIKPGEHG--S------------- 321 (439)
T ss_dssp EEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEECHHHHTTSCTTSSC--C-------------
T ss_pred EEEeccccCCccCCcchhHHHhCCCCcEE--EecccccC-CCCCeEEEEECHHHHhccCCCCcc--c-------------
Confidence 999999842 21101 111112347976 77898872 2 3499999999887766542211 0
Q ss_pred cccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCC
Q 037063 391 LETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMF 470 (588)
Q Consensus 391 ~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~ 470 (588)
.| +.+..+ .++..++|+.+.+ +.+.++++.+.+++.+.|.++. .+.+..+.
T Consensus 322 -------t~----~~~~~~---~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~-------~~~~~~~~----- 372 (439)
T 2oat_A 322 -------TY----GGNPLG---CRVAIAALEVLEE---ENLAENADKLGIILRNELMKLP-------SDVVTAVR----- 372 (439)
T ss_dssp -------SS----TTCHHH---HHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTSC-------TTTEEEEE-----
T ss_pred -------CC----CcCHHH---HHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHhc-------CCCcEEEE-----
Confidence 01 112122 2444567777655 3567889999999999998872 23332111
Q ss_pred CcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC
Q 037063 471 DRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT 550 (588)
Q Consensus 471 ~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~ 550 (588)
..|.++.+.+.+..+ .+...+.+.|.++||.++++ +...||+++++..
T Consensus 373 ~~g~~~~v~l~~~~~--~~~~~l~~~l~~~Gv~v~~~------------------------------~~~~iRi~~~~~~ 420 (439)
T 2oat_A 373 GKGLLNAIVIKETKD--WDAWKVCLRLRDNGLLAKPT------------------------------HGDIIRFAPPLVI 420 (439)
T ss_dssp EETTEEEEEECCCSS--CCHHHHHHHHHHTTEECCBS------------------------------SSSEEEECCCTTC
T ss_pred eeeeEEEEEEecCcc--HHHHHHHHHHHHCCeEEecC------------------------------CCCEEEEECccCC
Confidence 246788887764211 24566777777789998753 1128999999999
Q ss_pred CHHHHHHHHHHHHHhhhh
Q 037063 551 NFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 551 t~eDv~~li~~l~~~l~~ 568 (588)
+.||++++++.|++++++
T Consensus 421 t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 421 KEDELRESIEIINKTILS 438 (439)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999988753
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-19 Score=196.37 Aligned_cols=309 Identities=13% Similarity=0.034 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHh-CCCCCCceEEEecCHHHHHHHHHHhCCCCCCC----eEEEc-CCCchhHHHHHHHHHHhcCCEEEE
Q 037063 180 LESKIRKRIMDFM-NISEDDYTLVFTANQSSAFKLLAESYPFYSNP----RLLTV-YDHENEAAALMIESSKKRGARVSS 253 (588)
Q Consensus 180 ~~~~~r~~ia~~l-ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd----~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~ 253 (588)
+.+.+.+.+.+.. |.+.+..+|++|+|+++|+.+++.++ .++|| +|+++ ..|++ . ...++..|++++.
T Consensus 134 lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~~~d~Vlv~~p~y~~-~----~~~~~~~g~~~v~ 207 (498)
T 3ihj_A 134 IREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKIL-VSGGGKSRTGVMIPIPQYPL-Y----SAVISELDAIQVN 207 (498)
T ss_dssp HHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHH-CCCCGGGSEEEEEEESCCTH-H----HHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHH-cCCCCCCCCEEEEeCCCchh-H----HHHHHHcCCEEEE
Confidence 3334444444444 45433345999999999999999998 77775 76654 44542 2 3345667999999
Q ss_pred EeccCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcCCC-CC
Q 037063 254 AEFAWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALGSK-DM 327 (588)
Q Consensus 254 v~~~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~~~-d~ 327 (588)
++++.. ++.+|+++|+++|+.. ....++++|++.+++||||..+|.+. | ++|+++|+++|+|.+..... +-
T Consensus 208 ~~~~~~~~~~~d~~~le~~l~~~---~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~ 284 (498)
T 3ihj_A 208 YYLDEENCWALNVNELRRAVQEA---KDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSP 284 (498)
T ss_dssp EECBGGGTTBCCHHHHHHHHHHH---TTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCT
T ss_pred eeccccccCCCCHHHHHHHHHhh---hccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCC
Confidence 998732 3578999999999821 11126899999999999999999766 5 78999999999999954421 00
Q ss_pred C--CCCCCC----------CCC-cEEEeccCccC-CCCCCceEEEEE---eCcchhcccCCCCCCCceEeeecCCCcccc
Q 037063 328 D--TLGLSL----------FKP-DFLICSFYKIF-GENPSGFGCLFV---KKSSASVLSGSTSSVSTIMGIEPSFSEIIE 390 (588)
Q Consensus 328 ~--~l~l~~----------~~~-D~vv~S~~K~~-G~~P~G~G~L~v---~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~ 390 (588)
. ...+.. ..+ -+++.|++|.| |.+..++|++++ ++++++.+......
T Consensus 285 ~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~---------------- 348 (498)
T 3ihj_A 285 DCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSV---------------- 348 (498)
T ss_dssp TCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHH----------------
T ss_pred CCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhc----------------
Confidence 0 011100 012 25677999987 743456899885 55555544322100
Q ss_pred cccccccccccCCCCCccchhhHHHHHHHH-----------HHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC
Q 037063 391 LETLDESSQSKFPESSISGVSSKLVECKGL-----------DHADALGLILISNRARYLINWLANALMNLHHPHSETGIP 459 (588)
Q Consensus 391 ~~~~~~~~f~e~GT~~~~~~~~~~al~~aL-----------~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~ 459 (588)
.. +++..+. .++..++ +++.. ++.+.+++++.++++.+.|.++ |
T Consensus 349 ----------~~-~~~~~~q---~a~~~~l~~~~~g~~~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~---------~ 403 (498)
T 3ihj_A 349 ----------RL-CPPVSGQ---AAMDIVVNPPVAGEESFEQFSRE--KESVLGNLAKKAKLTEDLFNQV---------P 403 (498)
T ss_dssp ----------SC-CCCHHHH---HHHHHHTCCCCTTSTTHHHHHHH--HHHHHHHHHHHHHHHHHHHHTS---------T
T ss_pred ----------cC-CCCHHHH---HHHHHHhcCCccCcccHHHHHHH--HHHHHHHHHHHHHHHHHHHhcC---------C
Confidence 00 1111111 2233333 12222 3667788888999999999874 6
Q ss_pred eEEEeCCCCCCCcccEEEE-EeecCCC-------CCcCHHH--HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhh
Q 037063 460 LVRIYGPKVMFDRGPSLAF-NVFDWNG-------TRIDPAL--VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETR 529 (588)
Q Consensus 460 ~v~i~~p~~~~~rg~iv~f-~~~~~~g-------~~i~~~~--v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~ 529 (588)
+++++.| .++++.| .+....+ ..++.+. +.++|.+.||.+.+|..|...
T Consensus 404 g~~~~~p-----~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~---------------- 462 (498)
T 3ihj_A 404 GIHCNPL-----QGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQR---------------- 462 (498)
T ss_dssp TEECCCC-----CBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCC----------------
T ss_pred CcEecCC-----CeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC----------------
Confidence 7877654 4566655 3321100 0134444 578888899999998766310
Q ss_pred cCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 530 SGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 530 ~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.|...+|+|++ .+.+|++++++.|++++++
T Consensus 463 -------~~~~~~Ris~~--~~~e~l~~~i~~L~~~~~~ 492 (498)
T 3ihj_A 463 -------EGTYHFRMTIL--PPVEKLKTVLQKVKDFHIN 492 (498)
T ss_dssp -------TTCCBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred -------CCCCEEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 22238999985 7899999999999998865
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.4e-19 Score=187.50 Aligned_cols=332 Identities=10% Similarity=0.067 Sum_probs=210.5
Q ss_pred CCeeeecCCCCC---CC----CHHHHHHhhhhcccCc-CCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 110 NNYVCFDYIGHG---LF----SYSQMHSCSSNVHSSA-ASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 110 ~~~vyLD~a~~g---l~----~~~~~~~~~~~~~~~~-~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
.+..|+|+++.. ++ ++.+++++.+.+.... ++++ .| ..+..
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~----------------------------~~---~~~~~ 88 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAN----------------------------DF---YNIPQ 88 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCS----------------------------CS---CCHHH
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCcccccc----------------------------cc---CCHHH
Confidence 567899996543 22 7889998876653211 1100 00 02445
Q ss_pred HHHHHHHHHHhCCC-CCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHH-----Hhc-----CC
Q 037063 182 SKIRKRIMDFMNIS-EDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESS-----KKR-----GA 249 (588)
Q Consensus 182 ~~~r~~ia~~lga~-~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a-----~~~-----G~ 249 (588)
.++++++++++|++ ++ .|+||+|+++|+.+++..+...+|++|++ ...||......+ ... .+. +.
T Consensus 89 ~~l~~~la~~~~~~~~~--~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~-~~~~~~~~~~~~~~~~~~ 165 (419)
T 2eo5_A 89 LELAKKLVTYSPGNFQK--KVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSI-SLTASKAVQRSIVGPFMP 165 (419)
T ss_dssp HHHHHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHH-HHCCSCGGGGCSSCCCCT
T ss_pred HHHHHHHHHhCCCCcCC--EEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhH-hhcCCccccccccCCCCC
Confidence 68889999999986 44 49999999999999887541112788664 445554233221 110 111 23
Q ss_pred EEEEEeccCCCCc----------------cCHHHHH-HHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HH
Q 037063 250 RVSSAEFAWPNLR----------------IHSGKLM-KKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SV 307 (588)
Q Consensus 250 ~v~~v~~~~~~~~----------------i~~e~l~-~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~ 307 (588)
.++.++.+ .+.. ++.++|+ ++|++ ....+++++|++..++|+||.+.| +++| ++
T Consensus 166 ~~~~v~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~---~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l 241 (419)
T 2eo5_A 166 GVIHVPYP-NPYRNPWHINGYENPSELVNRVIEFIEDYIFVN---LVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKL 241 (419)
T ss_dssp TEEEECCC-CSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHH---TCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHH
T ss_pred CCEEECCC-ccccccccccccccchhhHHHHHHHHHHHHHhh---ccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHH
Confidence 67777774 2221 4578888 88862 001135778888877888999887 9999 99
Q ss_pred HHHcCcEEEEeCCCc-CCCC--CCCCCCCCCCCcEEEeccCccCCCCC-CceEEEEEeCcchhcccCCCCCCCceEeeec
Q 037063 308 AAEKGWHVLLDATAL-GSKD--MDTLGLSLFKPDFLICSFYKIFGENP-SGFGCLFVKKSSASVLSGSTSSVSTIMGIEP 383 (588)
Q Consensus 308 a~~~g~~vvvDaa~~-~~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P-~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~ 383 (588)
|+++|+++|+|+++. ++.. ...++.....+|++ ++.|.+|. + .++|+++++++++ .+ ....+ ++
T Consensus 242 ~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~riG~~~~~~~~~-~~-~~~~~--~t----- 309 (419)
T 2eo5_A 242 AKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TLAKALGG-GIMPIGATIFRKDLD-FK-PGMHS--NT----- 309 (419)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TTSCCEEEEEEGGGC-CC---------C-----
T ss_pred HHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEE--EecccccC-CccceEEEEEchHhh-cC-CcccC--CC-----
Confidence 999999999999976 3311 11111112347866 57798874 5 7899999999876 54 21111 00
Q ss_pred CCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEE
Q 037063 384 SFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRI 463 (588)
Q Consensus 384 ~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i 463 (588)
| +.|..+ .++..++|+.+++ +.++++.+++++.+.|.++ ...++
T Consensus 310 ---------------~----~~n~~~---~~aa~aal~~~~~-----~~~~~~~~~~~l~~~L~~~--------~~~~~- 353 (419)
T 2eo5_A 310 ---------------F----GGNALA---CAIGSKVIDIVKD-----LLPHVNEIGKIFAEELQGL--------ADDVR- 353 (419)
T ss_dssp ---------------C----CCCHHH---HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTS--------SSEEE-
T ss_pred ---------------C----CCCHHH---HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHh--------hhheE-
Confidence 0 112222 2455566765432 7788889999999998763 11121
Q ss_pred eCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEE
Q 037063 464 YGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVT 543 (588)
Q Consensus 464 ~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vR 543 (588)
..+.++.+.+... + .... +.+.|.++||.++.+. ..+||
T Consensus 354 -------~~g~~~~i~~~~~-~--~~~~-~~~~l~~~Gv~v~~~~------------------------------~~~lR 392 (419)
T 2eo5_A 354 -------GIGLAWGLEYNEK-K--VRDR-IIGESFKRGLLLLPAG------------------------------RSAIR 392 (419)
T ss_dssp -------EETTEEEEECSCH-H--HHHH-HHHHHHHTTEECEEET------------------------------TTEEE
T ss_pred -------eeeEEEEEEEecC-c--cHHH-HHHHHHHCCCEEecCC------------------------------CCEEE
Confidence 2466777766310 0 1134 6666668999988641 12899
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 544 AALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 544 vSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+|+++.++.||++++++.|++++++
T Consensus 393 is~~~~~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 393 VIPPLVISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988754
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=197.84 Aligned_cols=331 Identities=12% Similarity=0.060 Sum_probs=215.1
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|+|+++. |..++.+.+++.+.+.... ..+ + .+ ..+...+
T Consensus 37 ~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~-~~~----------------------~-----~~---~~~~~~~ 85 (406)
T 4adb_A 37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFW-HTG----------------------N-----GY---TNEPVLR 85 (406)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCS-CCC----------------------T-----TS---CCHHHHH
T ss_pred CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcc-ccc----------------------C-----Cc---CCHHHHH
Confidence 56789998876 2337788888766553211 000 0 00 1355789
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCC-------CC-CeEE-EcCCCchhHHHHHHHHHHh--------
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFY-------SN-PRLL-TVYDHENEAAALMIESSKK-------- 246 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~-------~g-d~ll-~~~e~~s~~~~~~~~~a~~-------- 246 (588)
++++++++++.+ .|+||+|+|+|+.+++..+ .. +| ++|+ ....||...... ......
T Consensus 86 l~~~la~~~~~~----~v~~~~gg~~a~~~al~~~-~~~~~~~~~~g~~~vi~~~~~y~~~~~~~-~~~~~~~~~~~~~~ 159 (406)
T 4adb_A 86 LAKKLIDATFAD----RVFFCNSGAEANEAALKLA-RKFAHDRYGSHKSGIVAFKNAFHGRTLFT-VSAGGQPAYSQDFA 159 (406)
T ss_dssp HHHHHHHHSSCS----EEEEESSHHHHHHHHHHHH-HHHHHHHTCTTCCEEEEETTCCCCSSHHH-HHHSSCGGGTGGGC
T ss_pred HHHHHHhhCCCC----eEEEeCcHHHHHHHHHHHH-HHHHHhcCCCCCcEEEEECCCcCCCcHHH-hhccCCccccccCC
Confidence 999999999874 4999999999999998876 33 55 7754 556666533322 111100
Q ss_pred -cCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccC-----CHHHH-HHHHHcCcEEEEeC
Q 037063 247 -RGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARY-----SYMWM-SVAAEKGWHVLLDA 319 (588)
Q Consensus 247 -~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~-----pl~~I-~~a~~~g~~vvvDa 319 (588)
.+..+..++. .|+++|+++++ +++++|+++ ++|++|..+ ++++| ++|+++|+++|+|+
T Consensus 160 ~~~~~~~~~~~------~d~~~l~~~l~--------~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De 224 (406)
T 4adb_A 160 PLPADIRHAAY------NDINSASALID--------DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDE 224 (406)
T ss_dssp SCCSSEEEECT------TCHHHHHTTCS--------TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCceEeCC------CcHHHHHHHhc--------CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 0134445543 36888888887 789999999 789999776 46777 89999999999999
Q ss_pred CCc-CCCCCCCC--CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccc
Q 037063 320 TAL-GSKDMDTL--GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDE 396 (588)
Q Consensus 320 a~~-~~~d~~~l--~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~ 396 (588)
++. ++..-..+ +.....+|++ +++|.+| ++.++|++++++++++.+.+...+. .
T Consensus 225 ~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~~--~------------------ 281 (406)
T 4adb_A 225 VQTGVGRTGELYAYMHYGVTPDLL--TTAKALG-GGFPVGALLATEECARVMTVGTHGT--T------------------ 281 (406)
T ss_dssp TTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-TTSCCEEEEECHHHHHTCCTTSSCC--S------------------
T ss_pred cccCCCccchhHHHHhcCCCCCEE--Eechhhc-CCCCeEEEEEcHHHHhhhccCCcCC--C------------------
Confidence 975 22111111 1112237877 5699888 3456999999998887776543221 0
Q ss_pred cccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE
Q 037063 397 SSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL 476 (588)
Q Consensus 397 ~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv 476 (588)
| +.+... .++..++|+.+. .+.+.++.+++++++.+.|.++... .+.+.-. ...+.++
T Consensus 282 --~----~~~~~~---~~a~~~~l~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~~-----~~~g~~~ 339 (406)
T 4adb_A 282 --Y----GGNPLA---SAVAGKVLELIN---TPEMLNGVKQRHDWFVERLNTINHR-----YGLFSEV-----RGLGLLI 339 (406)
T ss_dssp --S----TTCHHH---HHHHHHHHHHHS---SHHHHHHHHHHHHHHHHHHHHHHHH-----HCCEEEE-----EEETTEE
T ss_pred --C----CCCHHH---HHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHHHHHHh-----CCCceEE-----EEEEEEE
Confidence 0 111111 134445555543 2778888899999999988875100 0111111 1246788
Q ss_pred EEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHH
Q 037063 477 AFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTY 556 (588)
Q Consensus 477 ~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~ 556 (588)
.+.+.+.. ..+...+.+.|.++||.++.+. ...||+++++.++.||++
T Consensus 340 ~~~~~~~~--~~~~~~~~~~l~~~gi~v~~~~------------------------------~~~iRi~~~~~~~~e~i~ 387 (406)
T 4adb_A 340 GCVLNADY--AGQAKQISQEAAKAGVMVLIAG------------------------------GNVVRFAPALNVSEEEVT 387 (406)
T ss_dssp EEEECTTT--TTCHHHHHHHHHHTTEECEESS------------------------------TTEEEECCCTTCCHHHHH
T ss_pred EEEEeCCc--HHHHHHHHHHHHHCCcEEeecC------------------------------CCeEEEECCCCCCHHHHH
Confidence 88876521 1246677777777899987641 128999999999999999
Q ss_pred HHHHHHHHhhhhh
Q 037063 557 RLWAFVSRFLDAD 569 (588)
Q Consensus 557 ~li~~l~~~l~~~ 569 (588)
++++.|++++++.
T Consensus 388 ~~~~~l~~~l~~~ 400 (406)
T 4adb_A 388 TGLDRFAAACEHF 400 (406)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-20 Score=197.65 Aligned_cols=335 Identities=12% Similarity=0.044 Sum_probs=214.2
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
..-.|+|..+..+.++.+.+++.+.+.. .+..+ .|+. ..-..++|+.|+
T Consensus 36 ~~g~~~~~~~~~~~~~~v~~a~~~~~~~--~~~~~---------------------------~y~~--~~g~~~lr~~la 84 (412)
T 1ajs_A 36 GVGAYRTDDCQPWVLPVVRKVEQRIANN--SSLNH---------------------------EYLP--ILGLAEFRTCAS 84 (412)
T ss_dssp CSCCCCCTTSCCCCCHHHHHHHHHHHTC--TTCCC---------------------------CCCC--TTCCHHHHHHHH
T ss_pred ccceecCCCCCccccHHHHHHHHHhhhC--hhhcc---------------------------CCCC--CCCCHHHHHHHH
Confidence 4556778777777778888887544311 00000 0110 011258899999
Q ss_pred HHh-CC-----CCCCceEEE--ecCHHHHHHHHHH--hCCCCCC-----CeEEE-cCCCchhHHHHHHHHHHhcCCE-EE
Q 037063 190 DFM-NI-----SEDDYTLVF--TANQSSAFKLLAE--SYPFYSN-----PRLLT-VYDHENEAAALMIESSKKRGAR-VS 252 (588)
Q Consensus 190 ~~l-ga-----~~~e~~vvf--t~g~T~al~lv~~--s~~~~~g-----d~ll~-~~e~~s~~~~~~~~~a~~~G~~-v~ 252 (588)
+++ +. ++++ |+| |+|+++|+.+++. .+ +++| |+|++ ...|+. . ...++..|++ ++
T Consensus 85 ~~~~~~~~~~~~~~~--v~~~~t~gg~~a~~~~~~~~~~-~~~g~~~~~d~Vl~~~p~y~~-~----~~~~~~~g~~~~~ 156 (412)
T 1ajs_A 85 RLALGDDSPALQEKR--VGGVQSLGGTGALRIGAEFLAR-WYNGTNNKDTPVYVSSPTWEN-H----NGVFTTAGFKDIR 156 (412)
T ss_dssp HHHHCTTCHHHHTTC--EEEEEEEHHHHHHHHHHHHHHH-HSSSSSCCCSCEEEEESCCTH-H----HHHHHHTTCSCEE
T ss_pred HHHhcCCCCccCCCc--EEEEECCCcHHHHHHHHHHHHH-hCcCcCCCCCeEEEcCCCcHH-H----HHHHHHcCCceeE
Confidence 998 53 5554 999 9999999999864 33 5688 88664 445553 2 3455678999 99
Q ss_pred EEeccC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCc-CCCC
Q 037063 253 SAEFAW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATAL-GSKD 326 (588)
Q Consensus 253 ~v~~~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~-~~~d 326 (588)
.++.+. .++.+|+++|++++.+ ...+++++++++++|+||..+|.++ | ++|+++|+++|+|++.. +...
T Consensus 157 ~~~~~~~~~~~~d~~~l~~~l~~-----~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~ 231 (412)
T 1ajs_A 157 SYRYWDTEKRGLDLQGFLSDLEN-----APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASG 231 (412)
T ss_dssp EEECEETTTTEECHHHHHHHHHH-----SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTS
T ss_pred EEeeecCCCCccCHHHHHHHHHh-----CCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCC
Confidence 998842 4567899999999972 1136789999999999999998765 6 88999999999999943 3211
Q ss_pred -----CCCCC-CC-CCCCcEEEeccCccCCCCCCc--eEEEEE---eCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 327 -----MDTLG-LS-LFKPDFLICSFYKIFGENPSG--FGCLFV---KKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 327 -----~~~l~-l~-~~~~D~vv~S~~K~~G~~P~G--~G~L~v---~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
..++. +. ....++++.|++|.+| +.| +|++++ +++.++.+...... . .
T Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~--~~G~riG~~~~~~~~~~~~~~~~~~~~~---~--------------~- 291 (412)
T 1ajs_A 232 NLEKDAWAIRYFVSEGFELFCAQSFSKNFG--LYNERVGNLTVVAKEPDSILRVLSQMQK---I--------------V- 291 (412)
T ss_dssp CHHHHTHHHHHHHHTTCCEEEEEECTTTSC--CGGGCEEEEEEECSSHHHHHHHHHHHHH---H--------------H-
T ss_pred cccccchHHHHHhccCCcEEEEEecccccC--CCCcceEEEEEecCCHHHHHHHHHHHHH---H--------------H-
Confidence 00111 11 1113488999999999 566 899999 66533322110000 0 0
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCC
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHAD-----ALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVM 469 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~-----~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~ 469 (588)
++ ..++++.... +++..+|+... ...++++.++++.+++++.+.|.++..+ ..++++.|
T Consensus 292 ---~~-~~~~~~~~~~---~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~------~~~~~~~~--- 355 (412)
T 1ajs_A 292 ---RV-TWSNPPAQGA---RIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTP------GTWNHITD--- 355 (412)
T ss_dssp ---HT-TTSSCCSHHH---HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------SCCHHHHH---
T ss_pred ---hc-ccCCCChHHH---HHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC------CCeeEEcC---
Confidence 00 1112222221 34445665432 1136788899999999999999986211 02333322
Q ss_pred CCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC
Q 037063 470 FDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL 549 (588)
Q Consensus 470 ~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~ 549 (588)
.++++.|. + ++...+.+++.++||.++. .+|+|++.
T Consensus 356 --~~~~~~~~--~-----~~~~~~~~~l~~~gv~v~~----------------------------------~~Ris~~~- 391 (412)
T 1ajs_A 356 --QIGMFSFT--G-----LNPKQVEYLINQKHIYLLP----------------------------------SGRINMCG- 391 (412)
T ss_dssp --CCSSEEEC--C-----CCHHHHHHHHHTTCEECCT----------------------------------TSEEEGGG-
T ss_pred --CCceEEEe--C-----CCHHHHHHHHHhCCEEecC----------------------------------CcEEEeee-
Confidence 24444442 2 3356677888899998763 26999984
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q 037063 550 TNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 550 ~t~eDv~~li~~l~~~l~~ 568 (588)
.+.+|++++++.|++++++
T Consensus 392 ~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 392 LTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp CCTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4889999999999998754
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-20 Score=193.73 Aligned_cols=337 Identities=15% Similarity=0.101 Sum_probs=209.6
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhh-hcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSS-NVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRI 188 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~-~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~i 188 (588)
.--+|+|+.+.++.++.+++++.+ .+... +.. . |+. ..-..++|+.+
T Consensus 32 ~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~--~~~-----------------~-----------y~~--~~g~~~lr~~l 79 (397)
T 3fsl_A 32 SIGLYYNEDGIIPQLQAVAEAEARLNAQPH--GAS-----------------L-----------YLP--MEGLNCYRHAI 79 (397)
T ss_dssp SSCCCCCTTSCCCCCHHHHHHHHHHHHSCC--CCC-----------------C-----------CCC--TTCCHHHHHHH
T ss_pred eeeEEECCCCCccCcHHHHHHHHhhccCcc--ccc-----------------c-----------CCC--CCchHHHHHHH
Confidence 445688888888888999999876 54320 000 0 000 00124788888
Q ss_pred HHHhCC------CCCCceEEEecCHHHHHHHHHH--hCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc-CC
Q 037063 189 MDFMNI------SEDDYTLVFTANQSSAFKLLAE--SYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA-WP 259 (588)
Q Consensus 189 a~~lga------~~~e~~vvft~g~T~al~lv~~--s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~-~~ 259 (588)
+++++. +++...|++|+|+|+|+.+++. ++ +++||+|++....+... ...++..|++++.++.. ..
T Consensus 80 a~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~-~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~ 154 (397)
T 3fsl_A 80 APLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKR-YFPESGVWVSDPTWENH----VAIFAGAGFEVSTYPWYDEA 154 (397)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHH-HCTTCCEEEESSCCHHH----HHHHHHTTCCEEEECCEETT
T ss_pred HHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHh-cCCCCeEEEeCCCchhH----HHHHHHcCCceEEEeeeecc
Confidence 888754 3441159999999999999953 44 67899977655444322 34567789999999982 24
Q ss_pred CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCCCcCCC-CC----CCC
Q 037063 260 NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYM---WM-SVAAEKGWHVLLDATALGSK-DM----DTL 330 (588)
Q Consensus 260 ~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa~~~~~-d~----~~l 330 (588)
++.+|.++|++.+++ ..++++++++++++|+||..++.+ +| ++|+++|+++|+|.+..... +. ..+
T Consensus 155 ~~~~d~~~l~~~l~~-----~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 229 (397)
T 3fsl_A 155 TNGVRFNDLLATLKT-----LQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAI 229 (397)
T ss_dssp TTEECHHHHHHHHTT-----CCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHH
T ss_pred CCcCcHHHHHHHHHh-----CCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHH
Confidence 678999999999972 125689999999999999999887 46 78999999999999854321 10 000
Q ss_pred -CC-CCCCCcEEEeccCccCCCCCCceEEEEEeC---cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 331 -GL-SLFKPDFLICSFYKIFGENPSGFGCLFVKK---SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 331 -~l-~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~---~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
.+ .....++++.|++|.+|.+..++|++++.. +.++.+...... . . +. ..+++
T Consensus 230 ~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~--~-------------~------~~-~~~~~ 287 (397)
T 3fsl_A 230 RAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKA--T-------------V------RR-NYSSP 287 (397)
T ss_dssp HHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHH--H-------------H------HT-TTSSC
T ss_pred HHHHhcCCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHH--H-------------H------Hh-ccCCC
Confidence 00 122356888999999993223389988632 233222110000 0 0 00 01111
Q ss_pred CccchhhHHHHHHHHHHH-----HHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEe
Q 037063 406 SISGVSSKLVECKGLDHA-----DALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNV 480 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l-----~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~ 480 (588)
+.... .++..+++.. ....++++.++++.+++++.+.|.++... .+++++.| .++++.+
T Consensus 288 ~~~~~---~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~------~~~~~~~~-----~~~~~~~-- 351 (397)
T 3fsl_A 288 PNFGA---QVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPE------RNFDYLLN-----QRGMFSY-- 351 (397)
T ss_dssp CSHHH---HHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT------SCCTHHHH-----CCSSEEE--
T ss_pred CHHHH---HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CCceeecC-----CceEEEe--
Confidence 11111 2222223211 01125778888899999999999885100 02333322 2343333
Q ss_pred ecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHH
Q 037063 481 FDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 481 ~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~ 560 (588)
.+ ++.+.+.+++.++||.+++| . |+|++..++ +||+++++
T Consensus 352 ~~-----~~~~~~~~~l~~~gi~v~~g---------------------------------~-Ris~~~~~~-~~i~~~~~ 391 (397)
T 3fsl_A 352 TG-----LSAAQVDRLREEFGVYLIAS---------------------------------G-RMCVAGLNT-ANVQRVAK 391 (397)
T ss_dssp CC-----CCHHHHHHHHHTTCEECCTT---------------------------------C-EEEGGGCCT-TTHHHHHH
T ss_pred cC-----CCHHHHHHHHHhCCEEECCC---------------------------------C-eEEEEecCH-hhHHHHHH
Confidence 22 34677888999999998754 1 889876555 77999999
Q ss_pred HHHHhh
Q 037063 561 FVSRFL 566 (588)
Q Consensus 561 ~l~~~l 566 (588)
.|++.+
T Consensus 392 ~l~~~l 397 (397)
T 3fsl_A 392 AFAAVM 397 (397)
T ss_dssp HHHHHC
T ss_pred HHHhhC
Confidence 998753
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-18 Score=185.63 Aligned_cols=333 Identities=9% Similarity=0.051 Sum_probs=211.1
Q ss_pred CCCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
..+..|+|.++ .|..++.+++++.+.+... .+. | + . + ..+...
T Consensus 62 ~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~--~~~-~--------------------~---~--~---~~~~~~ 110 (433)
T 1z7d_A 62 VNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNL--TIC-S--------------------R---A--F---FSVPLG 110 (433)
T ss_dssp TTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTC--SCC-C--------------------T---T--S---EEHHHH
T ss_pred CCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhC--CCc-c--------------------C---C--c---CCHHHH
Confidence 35778999766 2225678888886665321 111 0 0 0 0 145667
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--------CCCC-CeEE-EcCCCchhHHHHHHHHHH----hcC
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--------FYSN-PRLL-TVYDHENEAAALMIESSK----KRG 248 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--------~~~g-d~ll-~~~e~~s~~~~~~~~~a~----~~G 248 (588)
++++++++++|. + .|+||+|+|+|+.+++..+. +.+| ++|+ ....||.....++ .... +.+
T Consensus 111 ~l~~~la~~~g~--~--~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~-~~~g~~~~~~~ 185 (433)
T 1z7d_A 111 ICERYLTNLLGY--D--KVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCI-SASTTKKCTSN 185 (433)
T ss_dssp HHHHHHHHHHTC--S--EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------
T ss_pred HHHHHHHhhcCC--C--eEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhh-cccCCcccccc
Confidence 899999999984 3 49999999999999887642 2467 7765 4556665322221 1111 001
Q ss_pred -----CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccC----CHHHH-HHHHHcCcEEEEe
Q 037063 249 -----ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARY----SYMWM-SVAAEKGWHVLLD 318 (588)
Q Consensus 249 -----~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~----pl~~I-~~a~~~g~~vvvD 318 (588)
..+..+|. .|+++|+++|.. +++++|++..+++++|.+. ++++| ++|+++|+++|+|
T Consensus 186 ~~p~~~~v~~~~~------~d~~~le~~l~~-------~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D 252 (433)
T 1z7d_A 186 FGPFAPQFSKVPY------DDLEALEEELKD-------PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVAD 252 (433)
T ss_dssp ------CEEEECT------TCHHHHHHHHTS-------TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCCeEEeCC------CCHHHHHHHhCC-------CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 34555543 278999999941 5789999988888899987 68889 9999999999999
Q ss_pred CCCcC-CCCCC--CCCCCCCCCcEEEeccCccCCCCC-CceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 319 ATALG-SKDMD--TLGLSLFKPDFLICSFYKIFGENP-SGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 319 aa~~~-~~d~~--~l~l~~~~~D~vv~S~~K~~G~~P-~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
+++.. +..-. .++.....+|++ ++.|.+|. . ..+|++++++++++.+.+...+ +
T Consensus 253 Ev~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~-G~~~~G~v~~~~~~~~~l~~~~~~--~----------------- 310 (433)
T 1z7d_A 253 EVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALSG-GHYPISAVLANDDIMLVIKPGEHG--S----------------- 310 (433)
T ss_dssp CTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEECHHHHTTCCTTCCC--C-----------------
T ss_pred cCccCCCcCCcchhhHhcCCCCCEE--EECccccC-CCCCeEEEEECHHHHhhhcccccc--c-----------------
Confidence 99862 21100 111112348876 67798882 3 3489999999887766542211 0
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
.| +.+..+ .++..++|+.+++ +.+.++++.+.+++.+.|.++.. +.+.+.... ..|.
T Consensus 311 ---t~----~~~~~~---~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~~~~~-----~~g~ 367 (433)
T 1z7d_A 311 ---TY----GGNPLA---ASICVEALNVLIN---EKLCENAEKLGGPFLENLKRELK-----DSKIVRDVR-----GKGL 367 (433)
T ss_dssp ---TT----TTCHHH---HHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHT-----TCTTEEEEE-----EETT
T ss_pred ---cC----CCCHHH---HHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHH-----hCCCeEEEE-----eeee
Confidence 01 112222 2444567776655 35677888889999998887510 123332221 2467
Q ss_pred EEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHH
Q 037063 475 SLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFED 554 (588)
Q Consensus 475 iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eD 554 (588)
++.+.+.+.. .+...+.+.|.++||.++++. . ..||+++++..+.||
T Consensus 368 ~~~i~~~~~~---~~~~~~~~~l~~~Gv~v~~~~----------------------------~--~~iRi~~~~~~t~e~ 414 (433)
T 1z7d_A 368 LCAIEFKNEL---VNVLDICLKLKENGLITRDVH----------------------------D--KTIRLTPPLCITKEQ 414 (433)
T ss_dssp EEEEEECTTT---CCHHHHHHHHHHTTEECCEET----------------------------T--TEEEECCCTTCCHHH
T ss_pred EEEEEEccCh---hHHHHHHHHHHHCCeEEecCC----------------------------C--CEEEEECCcCCCHHH
Confidence 8888776421 235667777777899987530 1 289999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 037063 555 TYRLWAFVSRFLDA 568 (588)
Q Consensus 555 v~~li~~l~~~l~~ 568 (588)
|+++++.|++++++
T Consensus 415 i~~~l~~l~~~l~~ 428 (433)
T 1z7d_A 415 LDECTEIIVKTVKF 428 (433)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-19 Score=190.21 Aligned_cols=328 Identities=9% Similarity=0.029 Sum_probs=213.6
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|||.++. |..++.+++++.+.+... .+. .+ .+ ..+..++
T Consensus 55 ~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~--~~~---------------------~~-----~~---~~~~~~~ 103 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGHCHPALVEALKSQGETL--WHT---------------------SN-----VF---TNEPALR 103 (420)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTC--CCC---------------------CT-----TS---CCHHHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhc--ccc---------------------cC-----cc---CCHHHHH
Confidence 57789998654 455788888886665321 111 00 01 1456789
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCC-------CCC-eEE-EcCCCchhHHHHHHHHHHhcCCE----
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFY-------SNP-RLL-TVYDHENEAAALMIESSKKRGAR---- 250 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~-------~gd-~ll-~~~e~~s~~~~~~~~~a~~~G~~---- 250 (588)
+++++++++|. + .|+||+|+|+|+.+++..+ .. +|+ +|+ ....||.....++ ...|.+
T Consensus 104 l~~~la~~~g~--~--~v~~~~ggteA~~~al~~~-~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~----~~~g~~~~~~ 174 (420)
T 2pb2_A 104 LGRKLIDATFA--E--RVLFMNSGTEANETAFKLA-RHYACVRHSPFKTKIIAFHNAFHGRSLFTV----SVGGQPKYSD 174 (420)
T ss_dssp HHHHHHHHSSC--S--EEEEESSHHHHHHHHHHHH-HHHHHHHTCTTCCEEEEETTCCCCSSHHHH----HHSSCHHHHT
T ss_pred HHHHHHhhCCC--C--eEEEeCCHHHHHHHHHHHH-HHHhhhccCCCCCEEEEEeCCcCCcCHHHH----HhcCCccccc
Confidence 99999999984 3 4999999999999999876 33 564 655 5556665333222 112322
Q ss_pred --------EEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCcc-C---CHHHH-HHHHHcCcEEEE
Q 037063 251 --------VSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGAR-Y---SYMWM-SVAAEKGWHVLL 317 (588)
Q Consensus 251 --------v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~-~---pl~~I-~~a~~~g~~vvv 317 (588)
+..++. .|+++|+++|+ +++++|++..++|++|.+ + ++++| ++|+++|+++|+
T Consensus 175 ~~~p~~~~~~~~~~------~d~~~le~~i~--------~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~ 240 (420)
T 2pb2_A 175 GFGPKPADIIHVPF------NDLHAVKAVMD--------DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVF 240 (420)
T ss_dssp TSSSCCSCEEEECT------TCHHHHHHHCC--------TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCCCCeEEecC------CCHHHHHHHhc--------cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEE
Confidence 555554 27899999987 679999999999988862 4 46667 899999999999
Q ss_pred eCCCcC-CCCCCCC--CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 318 DATALG-SKDMDTL--GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 318 Daa~~~-~~d~~~l--~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
|+++.. +..-..+ +.....+|++ +++|.+|. +.++|++++++++++.+.+...+ .+
T Consensus 241 Dev~~g~~~~g~~~~~~~~~~~~dii--t~sK~l~~-G~~iG~~~~~~~l~~~l~~~~~~--~t---------------- 299 (420)
T 2pb2_A 241 DEVQCGMGRTGDLFAYMHYGVTPDIL--TSAKALGG-GFPVSAMLTTQEIASAFHVGSHG--ST---------------- 299 (420)
T ss_dssp ECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSCCEEEEECHHHHTTCC----C--CE----------------
T ss_pred EcCCcCcccCCcHHHHHhcCCCCCeE--EecccccC-CCceEEEEEhHHHHHhhcCCCcC--cc----------------
Confidence 999852 2110111 1112248977 56898873 45699999998876666542211 00
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
| +.+..+ .++..++|+.+++ +.+.++.+++.+++.+.|.++.. +.+.+.... ..|.
T Consensus 300 ----~----~~~~~~---~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~-----~~~~~~~~~-----~~g~ 355 (420)
T 2pb2_A 300 ----Y----GGNPLA---CAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDE-----QFDIFSDIR-----GMGL 355 (420)
T ss_dssp ----E----CCCHHH---HHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHH-----HHCCEEEEE-----EETT
T ss_pred ----c----CcCHHH---HHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh-----cCCCeEEEE-----ecce
Confidence 0 111111 1344456666543 57788888999999998887510 012232221 2467
Q ss_pred EEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHH
Q 037063 475 SLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFED 554 (588)
Q Consensus 475 iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eD 554 (588)
++.+.+.+..+ .+...+.+.|.++||.++.+. ...||+++++..+.||
T Consensus 356 ~~~v~~~~~~~--~~~~~l~~~l~~~Gi~v~~~~------------------------------~~~iRl~~~~~~t~ee 403 (420)
T 2pb2_A 356 LIGAELKPKYK--GRARDFLYAGAEAGVMVLNAG------------------------------ADVMRFAPSLVVEEAD 403 (420)
T ss_dssp EEEEEECGGGT--TCHHHHHHHHHHTTEECEESS------------------------------TTEEEECCCTTCCHHH
T ss_pred EEEEEECCCch--HHHHHHHHHHHHCCCEEEeCC------------------------------CCEEEEECCCCCCHHH
Confidence 88887754210 135667777777999987641 1289999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 037063 555 TYRLWAFVSRFLDA 568 (588)
Q Consensus 555 v~~li~~l~~~l~~ 568 (588)
++++++.|++++++
T Consensus 404 i~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 404 IHEGMQRFAQAVGK 417 (420)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-20 Score=197.05 Aligned_cols=285 Identities=11% Similarity=0.008 Sum_probs=189.2
Q ss_pred HHHHHHHHHHhCC-----CCCCceEEEecCHHHHHHHHHHhCCCCCCC----eEEEcCCCchhHHHHHHHHHHhcCCEEE
Q 037063 182 SKIRKRIMDFMNI-----SEDDYTLVFTANQSSAFKLLAESYPFYSNP----RLLTVYDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 182 ~~~r~~ia~~lga-----~~~e~~vvft~g~T~al~lv~~s~~~~~gd----~ll~~~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
.++|+.|+++++. +++ .+|++|+|+++++.+++.++ +++|| +|++....+... ...++..|++++
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~-~~i~~t~G~~~al~~~~~~l-~~~Gd~~~~~Vlv~~P~y~~~----~~~~~~~g~~~~ 144 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATED-RYIVVGTGSTQLCQAAVHAL-SSLARSQPVSVVAAAPFYSTY----VEETTYVRSGMY 144 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSS-SEEEEEEHHHHHHHHHHHHH-HHTSSSSSEEEEECSSCCTHH----HHHHHTTCBTTE
T ss_pred HHHHHHHHHHHHhcCCCCCCC-CeEEEeCChHHHHHHHHHHh-cCCCCCCcceEEEcCCCchhH----HHHHHHcCCeEE
Confidence 4788888888872 332 35999999999999999999 78999 877655544322 345677899998
Q ss_pred EEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCC
Q 037063 253 SAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLG 331 (588)
Q Consensus 253 ~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~ 331 (588)
.++++. + .++ . +++++|++++++||||..++ +| +.++.++++||+|.++..+ ....+.
T Consensus 145 ~~~~d~-~------~l~---~--------~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~-~~~~l~ 203 (391)
T 3bwn_A 145 KWEGDA-W------GFD---K--------KGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWP-HYTPIT 203 (391)
T ss_dssp EEEEES-T------TCC---C--------CSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCST-TTSCCC
T ss_pred EecCCH-H------HcC---C--------CCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCC-CCCccc
Confidence 888762 2 111 2 56899999999999999997 56 5334445999999997743 122332
Q ss_pred CCCCCCcEEEeccCccCCCCCCc--eEEEEE-eCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 332 LSLFKPDFLICSFYKIFGENPSG--FGCLFV-KKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 332 l~~~~~D~vv~S~~K~~G~~P~G--~G~L~v-~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
. ....++++.|++|.|| +.| +|++++ ++++++.+....... ..+++.+.
T Consensus 204 ~-~~~~~i~~~S~SK~~g--~~GlRiG~~~~~~~~l~~~l~~~~~~~-------------------------~~~~~~~~ 255 (391)
T 3bwn_A 204 R-RQDHDIMLFTFSKITG--HAGSRIGWALVKDKEVAKKMVEYIIVN-------------------------SIGVSKES 255 (391)
T ss_dssp C-CBCCSEEEEEHHHHHS--CGGGCEEEEEECCHHHHHHHHHHHHHH-------------------------HSSCCHHH
T ss_pred c-CCCCeEEEEechhhcC--CCccceEEEEecCHHHHHHHHHHhccc-------------------------ccCCCHHH
Confidence 2 2347899999999998 445 699998 667766554322100 01112222
Q ss_pred chhhHHHHHHHHHHHH---------HhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCC---------
Q 037063 409 GVSSKLVECKGLDHAD---------ALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMF--------- 470 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~---------~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~--------- 470 (588)
+ .++..+|+.-. +..++++.++.+..++++.+.|.++ +++++..|....
T Consensus 256 q----~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~p~~~~~~f~~~~~~ 322 (391)
T 3bwn_A 256 Q----VRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKES---------DAFTLPKYPEAFCNYFGKSLE 322 (391)
T ss_dssp H----HHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC---------SSEECCCCCCEEETTTTEEEC
T ss_pred H----HHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCcccccCCccccccccccCC
Confidence 2 23345554321 1126778888899999999999884 456665543210
Q ss_pred CcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC
Q 037063 471 DRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT 550 (588)
Q Consensus 471 ~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~ 550 (588)
..|..+.+.+.+ .+.+.++|.++||.+++|..|. .+.++||+|++ +
T Consensus 323 ~~g~~~~~~~~~-------~~~~~~~l~~~gV~v~pg~~fg-------------------------~~~~~iRis~~--~ 368 (391)
T 3bwn_A 323 SYPAFAWLGTKE-------ETDLVSELRRHKVMSRAGERCG-------------------------SDKKHVRVSML--S 368 (391)
T ss_dssp CCCSEEEEEESS-------SCCHHHHHHHTTEECEEGGGGT-------------------------CCTTEEEEESC--S
T ss_pred CcceEEEecCCc-------HHHHHHHHHHCCEEEccCCCCC-------------------------CCCCEEEEEec--C
Confidence 122344555543 1346788889999999997652 11238999998 4
Q ss_pred CHHHHHHHHHHHHHhhhh
Q 037063 551 NFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 551 t~eDv~~li~~l~~~l~~ 568 (588)
+.|+++++++.|++++++
T Consensus 369 ~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 369 REDVFNVFLERLANMKLI 386 (391)
T ss_dssp CHHHHHHHHHHHHSCC--
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 899999999999987654
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=201.53 Aligned_cols=318 Identities=11% Similarity=-0.000 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCC-----C----CeEEEcCCCchhHHHHHHHHHHhcCCE
Q 037063 180 LESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYS-----N----PRLLTVYDHENEAAALMIESSKKRGAR 250 (588)
Q Consensus 180 ~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~-----g----d~ll~~~e~~s~~~~~~~~~a~~~G~~ 250 (588)
...++|++++++++.+ .++||+|+|+|+.+++.++ .++ | |+|++...|..+.. ......|+.
T Consensus 75 ~~~~l~~~la~~~~~~----~v~~t~~gt~A~~~al~~~-~~~~~~~~G~~~~d~Ii~~~~h~~t~~----~~~~~~~~~ 145 (467)
T 2oqx_A 75 SYYALAESVKNIFGYQ----YTIPTHQGRGAEQIYIPVL-IKKREQEKGLDRSKMVAFSNYFFDTTQ----GHSQINGCT 145 (467)
T ss_dssp HHHHHHHHHHHHHCCS----EEEEEC--CCSHHHHHHHH-HHHHHHHHCCCTTTCEEEESSCCHHHH----HHHHHTTCE
T ss_pred hhHHHHHHHHHHhCcC----cEEEcCCcHHHHHHHHHHH-hccccccCCCCccceEEecccccccch----hhhhccCcc
Confidence 3468899999999872 4999999999999999887 677 8 88776655543221 122345666
Q ss_pred EEEEec----cC-----CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCC-CccCCH---HHH-HHHHHcCcEEE
Q 037063 251 VSSAEF----AW-----PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVT-GARYSY---MWM-SVAAEKGWHVL 316 (588)
Q Consensus 251 v~~v~~----~~-----~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~t-G~~~pl---~~I-~~a~~~g~~vv 316 (588)
+..... +. .++.+|+++|+++|++. ..+++++|++.+++|++ |..+|. ++| ++|+++|+++|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~----~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li 221 (467)
T 2oqx_A 146 VRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEV----GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVV 221 (467)
T ss_dssp EEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHH----CGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEE
T ss_pred eeeccccccccCCCCCCccCCcCHHHHHHHHHhc----CCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 654321 10 23568999999999721 01368999999999998 888775 567 89999999999
Q ss_pred EeCCCcC-----------C---CCCCCCCCC-CCCCcEEEeccCccCCCCCCceEEEEEeCc-chhc---ccCCC-CCCC
Q 037063 317 LDATALG-----------S---KDMDTLGLS-LFKPDFLICSFYKIFGENPSGFGCLFVKKS-SASV---LSGST-SSVS 376 (588)
Q Consensus 317 vDaa~~~-----------~---~d~~~l~l~-~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~-~~~~---l~~~~-~g~~ 376 (588)
+|+++.. . .+...+... ...+|++++|+||.+|. |.| |+++.+++ +++. +++.. .++
T Consensus 222 ~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~-~~G-g~~~~~~~~~~~~~~~~~~~~~~~~- 298 (467)
T 2oqx_A 222 MDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMV-PMG-GLLCMKDDSFFDVYTECRTLCVVQE- 298 (467)
T ss_dssp EECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCC-SSC-EEEEECSGGGHHHHHHHHHHHHHTT-
T ss_pred EEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCC-CCc-eEEEecChhHHHHHHHHHHhhhccC-
Confidence 9988765 1 111111000 01278899999999985 655 77777777 4432 32221 110
Q ss_pred ceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCC
Q 037063 377 TIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSET 456 (588)
Q Consensus 377 g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~ 456 (588)
+. . ..|+.+..++ +++..+++. .+. +...++...+++++.+.|.++
T Consensus 299 ~~--------------------~-~~~~~~~~~~---~al~~~l~~--~~~-~~~~~~~~~~~~~l~~~L~~~------- 344 (467)
T 2oqx_A 299 GF--------------------P-TYGGLEGGAM---ERLAVGLYD--GMN-LDWLAYRIAQVQYLVDGLEEI------- 344 (467)
T ss_dssp SS--------------------C-CCCCCCHHHH---HHHHHHHHH--TTC-HHHHHHHHHHHHHHHHHHHHT-------
T ss_pred Cc--------------------c-cccchhhhHH---HHHHHhhHh--hhh-HHHHHHHHHHHHHHHHHHHHC-------
Confidence 10 0 1222221111 222222221 111 123344567788888888874
Q ss_pred CCCeEEEeCCCCCCCcccEEEEEeec----CCCCCcCHHHHHHHH-HhCCcEeccccccCcccccchHHHHHHHHhhhcC
Q 037063 457 GIPLVRIYGPKVMFDRGPSLAFNVFD----WNGTRIDPALVQKLA-DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSG 531 (588)
Q Consensus 457 g~~~v~i~~p~~~~~rg~iv~f~~~~----~~g~~i~~~~v~~~l-~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~ 531 (588)
| +++. | ..+.++.+.+.+ .+...++...+.+.| .++||.+.+|..|..+....+ +
T Consensus 345 ~---~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~----------g-- 404 (467)
T 2oqx_A 345 G---VVCQ-Q----AGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKT----------G-- 404 (467)
T ss_dssp T---CCEE-E----ECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTT----------C--
T ss_pred C---Ceee-c----CCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccc----------c--
Confidence 2 2333 3 235566666632 111111123345555 889999987533311100000 0
Q ss_pred CCCCcCCccEEEEecCCC-CCHHHHHHHHHHHHHhhhh
Q 037063 532 TNETRSGVSVVTAALGCL-TNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 532 ~~~~~~g~~~vRvSlg~~-~t~eDv~~li~~l~~~l~~ 568 (588)
.....+...||++++.. ++.+||+++++.|+++++.
T Consensus 405 -~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~ 441 (467)
T 2oqx_A 405 -KQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp -SBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred -ccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 00001224999999998 9999999999999998865
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=192.61 Aligned_cols=336 Identities=12% Similarity=0.065 Sum_probs=210.4
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
..-+|+|..+.++.++.+.+++.+.+... ..+ . |+. ..-..++|+.++
T Consensus 55 ~~G~y~d~~~~~~~~~~v~~a~~~~~~~~---~~~----------------~-----------Y~~--~~g~~~lr~~ia 102 (420)
T 4f4e_A 55 GVGVYTNEDGKIPLLRAVRDAEKARVEAG---LPR----------------G-----------YLP--IDGIAAYDASVQ 102 (420)
T ss_dssp CCCSCCCTTSCCCCCHHHHHHHHHHHHTC---CCC----------------C-----------CCC--TTCCHHHHHHHH
T ss_pred eeeeeECCCCCccCcHHHHHHHHHHhccC---CCC----------------C-----------CCC--CCCcHHHHHHHH
Confidence 55679999999999899999886655320 000 0 000 001246778888
Q ss_pred HHhCC------CCCCceEEEecCHHHHHHHHHH--hCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec-cCCC
Q 037063 190 DFMNI------SEDDYTLVFTANQSSAFKLLAE--SYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF-AWPN 260 (588)
Q Consensus 190 ~~lga------~~~e~~vvft~g~T~al~lv~~--s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~-~~~~ 260 (588)
++++. +++..+|++|+|+|+|+.+++. ++ +++||+|++....+... ...++..|++++.++. +..+
T Consensus 103 ~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~-~~~gd~Vlv~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~ 177 (420)
T 4f4e_A 103 KLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRT-LNPKAKVAISDPSWENH----RALFDMAGFEVVAYPYYDAKT 177 (420)
T ss_dssp HHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHH-HCTTCCEEEEESCCHHH----HHHHHHTTCCEEEEECEETTT
T ss_pred HHhcCCCccccccCceEEEECCccHHHHHHHHHHHHH-hCCCCEEEEeCCCcHhH----HHHHHHcCCeEEEeeeecccc
Confidence 77743 3331159999999999999943 55 68999977554443322 3455678999999998 3246
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcCC-CCC----CCC-
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALGS-KDM----DTL- 330 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~~-~d~----~~l- 330 (588)
+.+|.++|++.+++ ..++++++++++++|+||..++.++ | ++|+++|+++|+|.+...- .+. ..+
T Consensus 178 ~~~d~~~l~~~l~~-----~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~ 252 (420)
T 4f4e_A 178 NGVNFDGMLAALNG-----YEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVR 252 (420)
T ss_dssp TEECHHHHHHHHTT-----CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHH
T ss_pred CccCHHHHHHHHHh-----CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHH
Confidence 78999999999972 1257899999999999999999775 5 7799999999999984321 110 000
Q ss_pred CC-CCCCCcEEEeccCccCCCCCCceEEEEEe---CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 331 GL-SLFKPDFLICSFYKIFGENPSGFGCLFVK---KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 331 ~l-~~~~~D~vv~S~~K~~G~~P~G~G~L~v~---~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
.+ .....++++.|++|.||.+..++|++++. ++.++.+...... . . +. ...+++
T Consensus 253 ~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~----------------~-~----~~-~~~~~~ 310 (420)
T 4f4e_A 253 LFAAANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKR----------------V-I----RT-NYSNPP 310 (420)
T ss_dssp HHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHH----------------H-H----HT-TTSSCC
T ss_pred HHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHH----------------H-H----hc-ccCCCC
Confidence 00 12236788999999999322338998752 2332221100000 0 0 00 001111
Q ss_pred ccchhhHHHHHHHHHHH------HHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEe
Q 037063 407 ISGVSSKLVECKGLDHA------DALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNV 480 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l------~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~ 480 (588)
.... .++..++... ++ .++++.++.+.+++++.+.|.++.- .++++++.| .++++.|
T Consensus 311 ~~~~---~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~------~~~~~~~~~-----~~g~~~~-- 373 (420)
T 4f4e_A 311 THGG---AIVAAVLASPELRASWVQ-ELGEMRDRIRAMRNGLVERLKAAGI------ERDFSFINA-----QRGMFSY-- 373 (420)
T ss_dssp SHHH---HHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTC------SSCCTHHHH-----SCSSEEE--
T ss_pred HHHH---HHHHHHhcCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCC------CCCceeECC-----CccEEEE--
Confidence 1111 2222233221 11 2577888889999999999988510 013333332 2344433
Q ss_pred ecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHH
Q 037063 481 FDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 481 ~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~ 560 (588)
.+ ++.+.+.+++.++||.+++| .|+|++.. +.+||+++++
T Consensus 374 ~~-----~~~~~~~~~l~~~gI~v~~~----------------------------------~Ris~~~~-~~~~i~~~~~ 413 (420)
T 4f4e_A 374 SG-----LTSAQVDRLREEFGIYAVST----------------------------------GRICVAAL-NTRNLDVVAN 413 (420)
T ss_dssp CC-----CCHHHHHHHHHHHCEECCTT----------------------------------SEEEGGGC-CTTTHHHHHH
T ss_pred eC-----CCHHHHHHHHHhCCEEecCC----------------------------------CeEEEecC-CHHHHHHHHH
Confidence 22 45677888999999988643 28998754 5577999999
Q ss_pred HHHHhh
Q 037063 561 FVSRFL 566 (588)
Q Consensus 561 ~l~~~l 566 (588)
.|++++
T Consensus 414 ~l~~~l 419 (420)
T 4f4e_A 414 AIAAVL 419 (420)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999876
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-19 Score=196.28 Aligned_cols=309 Identities=10% Similarity=0.059 Sum_probs=187.7
Q ss_pred ceEEEecCHHHHHHHHHHh-----CCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC---CCCccCHHHHHH
Q 037063 199 YTLVFTANQSSAFKLLAES-----YPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW---PNLRIHSGKLMK 270 (588)
Q Consensus 199 ~~vvft~g~T~al~lv~~s-----~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~---~~~~i~~e~l~~ 270 (588)
.+|++|+|+|+|+.+++.+ + +++||+|++....+... ...++..|++++.++++. .++.+++++|++
T Consensus 165 ~~i~~t~G~t~al~~~~~~l~~~~l-~~~gd~Viv~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~ 239 (533)
T 3f6t_A 165 TDLFPTEGGTAAIVYAFHSLAENHL-LKKGDKIAINEPIFTPY----LRIPELKDYELVEVDLHSYEKNDWEIEPNEIEK 239 (533)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHTTS-SCTTCEEEEESSCCHHH----HTSGGGGGSEEEEECCCEETTTTSEECHHHHHH
T ss_pred ceEEEECCHHHHHHHHHHHhhhhhc-cCCcCEEEEcCCCcHHH----HHHHHHcCCeEEEEEecCCcccCCCCCHHHHHH
Confidence 4699999999999999998 6 89999977654444312 344566799999998852 457789999999
Q ss_pred HHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHH-HcCcEEEEeCCCcCC-CCCCCCCCCCCCCcEEEecc
Q 037063 271 KIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAA-EKGWHVLLDATALGS-KDMDTLGLSLFKPDFLICSF 344 (588)
Q Consensus 271 ~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~-~~g~~vvvDaa~~~~-~d~~~l~l~~~~~D~vv~S~ 344 (588)
+++ +++++|++.+++|+||..+|.++ | ++|+ ++|+++|+|.++..- .+..++.-.....++++.|+
T Consensus 240 ~l~--------~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~ 311 (533)
T 3f6t_A 240 LKD--------PSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSY 311 (533)
T ss_dssp HSC--------TTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEES
T ss_pred HhC--------CCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecC
Confidence 987 78999999999999999999985 5 6777 589999999996531 11111100011245999999
Q ss_pred CccCCCCCCc--eEEEEEeCc-----chhcccCCCCCC----CceEeeecCCCccccccc-----ccccccccCCCCCcc
Q 037063 345 YKIFGENPSG--FGCLFVKKS-----SASVLSGSTSSV----STIMGIEPSFSEIIELET-----LDESSQSKFPESSIS 408 (588)
Q Consensus 345 ~K~~G~~P~G--~G~L~v~~~-----~~~~l~~~~~g~----~g~v~~~~~~~~~~~~~~-----~~~~~f~e~GT~~~~ 408 (588)
+|.+| +.| +|+++++++ +++.+.+..... .+.....+.. ...++. +....+ ..++.+..
T Consensus 312 SK~~g--~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~--~~~i~rl~~~~~~~~~~-~~~~~~~~ 386 (533)
T 3f6t_A 312 SKLFG--CTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDK--MKFIDRLCADSRSIGLY-HTAGLSTP 386 (533)
T ss_dssp HHHHT--CGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGG--CCHHHHHHHHHTTTTTG-GGCSCCHH
T ss_pred cccCC--CcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcch--hhhHHHHHHHHHHHHHh-cccCCChH
Confidence 99999 456 999999987 544442110000 0000000000 000000 000011 11222222
Q ss_pred chhhHHHHHHHHHHHH------Hh--CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEE-E
Q 037063 409 GVSSKLVECKGLDHAD------AL--GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAF-N 479 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~------~~--G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f-~ 479 (588)
.. .++...++..+. .. -++++.++++..++.+.+.|. + + +.+.. ..+++..+ .
T Consensus 387 ~q--~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~-------~---~~~~~-----~~~g~~~~~~ 448 (533)
T 3f6t_A 387 QQ--IMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-A-------P---KDETD-----TNTHYYSLID 448 (533)
T ss_dssp HH--HHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C-------C---CCCST-----TBCCSEEEEE
T ss_pred HH--HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-C-------C---ccccC-----CCceEEEEEe
Confidence 21 111111333332 01 156677777788888888885 4 1 22222 23443333 3
Q ss_pred eecC----CCC--------CcC-HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec
Q 037063 480 VFDW----NGT--------RID-PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL 546 (588)
Q Consensus 480 ~~~~----~g~--------~i~-~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl 546 (588)
+..+ .|. ..+ .+.+.++++++||.+.+|..|.. +.+.||+|+
T Consensus 449 l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~-------------------------~~~~iRls~ 503 (533)
T 3f6t_A 449 IYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGA-------------------------KPGELRVSQ 503 (533)
T ss_dssp HHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECS-------------------------STTEEEEES
T ss_pred hHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCC-------------------------CCCEEEEEE
Confidence 3210 000 012 24557788899999999977731 123999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhh
Q 037063 547 GCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 547 g~~~t~eDv~~li~~l~~~l~~~ 569 (588)
+. .+.+||+++++.|++++++.
T Consensus 504 a~-~~~e~i~~~i~~L~~~l~~~ 525 (533)
T 3f6t_A 504 AN-LPTEDYALIGKQVLELLKEY 525 (533)
T ss_dssp SS-SCHHHHHHHHHHHHHHHHHH
T ss_pred ee-CCHHHHHHHHHHHHHHHHHH
Confidence 65 46899999999999988763
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-20 Score=193.63 Aligned_cols=331 Identities=14% Similarity=0.132 Sum_probs=208.5
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
..-.|+|..+..+.++.+.+++.+.+... ..+ .|+. ..-..++|+.|+
T Consensus 32 ~~g~~~~~~~~~~~~~~v~~a~~~~~~~~---~~~---------------------------~y~~--~~g~~~lr~~la 79 (396)
T 2q7w_A 32 GIGVYKDETGKTPVLTSVKKAEQYLLENE---TTK---------------------------NYLG--IDGIPEFGRCTQ 79 (396)
T ss_dssp SCCSCCCTTSCCCCCHHHHHHHHHHHHHC---CCC---------------------------CCCC--TTCCHHHHHHHH
T ss_pred ccccccCCCCCccCcHHHHHHHHhhcCcc---ccc---------------------------CCCC--CCCCHHHHHHHH
Confidence 45568888877788888888875543211 000 0000 011247889999
Q ss_pred HHhC------CCCCCceEEE--ecCHHHHHHHHHHhCC-CCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEeccC-
Q 037063 190 DFMN------ISEDDYTLVF--TANQSSAFKLLAESYP-FYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEFAW- 258 (588)
Q Consensus 190 ~~lg------a~~~e~~vvf--t~g~T~al~lv~~s~~-~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~~~- 258 (588)
++++ +++++ |+| |+|+|+|+.+++..+. +.+||+|++. ..|+. . ...++..|++++.++.+.
T Consensus 80 ~~~~~~~~~~~~~~~--v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~-~----~~~~~~~g~~~~~~~~~~~ 152 (396)
T 2q7w_A 80 ELLFGKGSALINDKR--ARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPN-H----KSVFNSAGLEVREYAYYDA 152 (396)
T ss_dssp HHHHCTTCHHHHTTC--EEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTH-H----HHHHHHTTCEEEEEECEET
T ss_pred HHHhcCCCCcccccc--EEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchh-H----HHHHHHcCCceEEEecccC
Confidence 9882 23444 888 9999999999987652 4689997654 44443 2 345567899999999842
Q ss_pred CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcCC-CC----CCC
Q 037063 259 PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALGS-KD----MDT 329 (588)
Q Consensus 259 ~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~~-~d----~~~ 329 (588)
.++.+|+++|++++++ ..++++++++++++|+||..+|.++ | ++|+++|+++|+|+++... .+ ..+
T Consensus 153 ~~~~~d~~~l~~~l~~-----~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 227 (396)
T 2q7w_A 153 ENHTLDFDALINSLNE-----AQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEG 227 (396)
T ss_dssp TTTEECHHHHHHHHTT-----CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHH
T ss_pred CCCCcCHHHHHHHHHh-----CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHH
Confidence 3567899999999972 1135789999999999999998765 6 7899999999999996542 10 001
Q ss_pred CC-CCC-CCCcEEEeccCccCCCCCCc--eEEEEE---eCcchhcccCCCCCCCceEeeecCCCcccccccccccccccC
Q 037063 330 LG-LSL-FKPDFLICSFYKIFGENPSG--FGCLFV---KKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKF 402 (588)
Q Consensus 330 l~-l~~-~~~D~vv~S~~K~~G~~P~G--~G~L~v---~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~ 402 (588)
+. +.. ...++++.|++|.+| +.| +|++++ +++.++.+...... . . +. ..
T Consensus 228 ~~~~~~~~~~~i~~~s~sK~~~--~~G~riG~~~~~~~~~~~~~~~~~~~~~---~--------------~----~~-~~ 283 (396)
T 2q7w_A 228 LRAFAAMHKELIVASSYSXNFG--LYNERVGACTLVAADSETVDRAFSQMKA---A--------------I----RA-NY 283 (396)
T ss_dssp HHHHHHHCSCEEEEEECTTTTT--CGGGCCEEEEEECSSHHHHHHHHHHHHH---H--------------H----HT-TT
T ss_pred HHHHHhcCCcEEEEEecccccc--ccccccceEEEEcCCHHHHHHHHHHHHH---H--------------H----hh-cc
Confidence 11 111 124688999999999 456 799997 44322222110000 0 0 00 11
Q ss_pred CCCCccchhhHHHHHHHHHHH------HHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC-eEEEeCCCCCCCcccE
Q 037063 403 PESSISGVSSKLVECKGLDHA------DALGLILISNRARYLINWLANALMNLHHPHSETGIP-LVRIYGPKVMFDRGPS 475 (588)
Q Consensus 403 GT~~~~~~~~~~al~~aL~~l------~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~-~v~i~~p~~~~~rg~i 475 (588)
++++.... +++..+|+.. .+ .++++.++++.+++++.+.|.++ |.+ .++++.| .+++
T Consensus 284 ~~~~~~~~---~a~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~-----~~~~ 347 (396)
T 2q7w_A 284 SNPPAHGA---SVVATILSNDALRAIWEQ-ELTDMRQRIQRMRQLFVNTLQEK-------GANRDFSFIIK-----QNGM 347 (396)
T ss_dssp SSCCHHHH---HHHHHHHTSHHHHHHHHH-HHHHC-CHHHHHHHHHHHHHHHT-------TCCSCCTHHHH-----CCSS
T ss_pred CCCCcHHH---HHHHHHhcChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc-------CCCCCcceecC-----CCce
Confidence 12222221 2333444322 11 35677888888999999999885 111 2333322 3444
Q ss_pred EEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHH
Q 037063 476 LAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDT 555 (588)
Q Consensus 476 v~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv 555 (588)
+.+. + ++.+.+.+++.++||.+++ .+|+|++.. +.||+
T Consensus 348 ~~~~--~-----~~~~~~~~~l~~~gv~v~~----------------------------------~~Ris~~~~-~~e~i 385 (396)
T 2q7w_A 348 FSFS--G-----LTKEQVLRLREEFGVYAVA----------------------------------SGRVNVAGM-TPDNM 385 (396)
T ss_dssp EEEC--C-----CCHHHHHHHHHHHCEECCT----------------------------------TCEEEGGGC-CTTTH
T ss_pred EEEe--c-----CCHHHHHHHHHhcCeeecC----------------------------------CceEEEeec-CHHHH
Confidence 4332 2 3356678888889998763 269999854 88999
Q ss_pred HHHHHHHHHhh
Q 037063 556 YRLWAFVSRFL 566 (588)
Q Consensus 556 ~~li~~l~~~l 566 (588)
+++++.|++++
T Consensus 386 ~~~~~~l~~~l 396 (396)
T 2q7w_A 386 APLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999998754
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.5e-20 Score=193.38 Aligned_cols=294 Identities=14% Similarity=0.128 Sum_probs=188.5
Q ss_pred HHHHHHHHHHh-CC--CCCCceEEE--ecCHHHHHHHHHHhCC-CCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEE
Q 037063 182 SKIRKRIMDFM-NI--SEDDYTLVF--TANQSSAFKLLAESYP-FYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 182 ~~~r~~ia~~l-ga--~~~e~~vvf--t~g~T~al~lv~~s~~-~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
.++|+.|++++ +. +++ .|+| |+|+|+|+.+++..+. +.+||+|++. ..|+. . ...++..|++++.+
T Consensus 72 ~~lr~~la~~~~~~~~~~~--~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~-~----~~~~~~~g~~~~~~ 144 (394)
T 2ay1_A 72 PEFQKAMGELILGDGLKSE--TTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPN-H----VSIMNFMGLPVQTY 144 (394)
T ss_dssp HHHHHHHHHHHHGGGCCGG--GEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHH-H----HHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHhCCCCCcc--cEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChh-H----HHHHHHcCCceEEE
Confidence 47888999887 55 444 4999 9999999999987752 3489996654 44543 2 34456679999999
Q ss_pred eccC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcCC-CC--
Q 037063 255 EFAW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALGS-KD-- 326 (588)
Q Consensus 255 ~~~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~~-~d-- 326 (588)
+.+. .++.+|.++|+++++. . .++++++++++++|+||..+|.++ | ++|+++|+++|+|+++... .+
T Consensus 145 ~~~~~~~~~~d~~~l~~~l~~----~-~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~ 219 (394)
T 2ay1_A 145 RYFDAETRGVDFEGMKADLAA----A-KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLE 219 (394)
T ss_dssp ECEETTTTEECHHHHHHHHHT----C-CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHH
T ss_pred ecccccCCccCHHHHHHHHHh----C-CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcc
Confidence 9852 3467899999999972 1 134788999999999999998764 5 7899999999999997642 10
Q ss_pred --CCCCC-CCCCCC-cEEEeccCccCCCCCCceEEEEE---eCcchhcccCCCCCCCceEeeecCCCccccccccccccc
Q 037063 327 --MDTLG-LSLFKP-DFLICSFYKIFGENPSGFGCLFV---KKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQ 399 (588)
Q Consensus 327 --~~~l~-l~~~~~-D~vv~S~~K~~G~~P~G~G~L~v---~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f 399 (588)
..++. +..... ++++.|++|.+|.+..++|++++ ++++++.+...... . . +.
T Consensus 220 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~---~--------------~----~~ 278 (394)
T 2ay1_A 220 EDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAF---L--------------N----RQ 278 (394)
T ss_dssp HHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHH---H--------------H----HT
T ss_pred cchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHH---H--------------H----hh
Confidence 00111 111123 46788999999832223699998 45443332111000 0 0 00
Q ss_pred ccCCCCCccchhhHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 400 SKFPESSISGVSSKLVECKGLDHAD-----ALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 400 ~e~GT~~~~~~~~~~al~~aL~~l~-----~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
..++++.... +++..+|+... ...++++.++++.+++++.+.|.++..+ .+++++.| .++
T Consensus 279 -~~~~~~~~~~---~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~------~~~~~~~~-----~~g 343 (394)
T 2ay1_A 279 -TYSFPPFHGA---KIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGS------DRFGFVAE-----HRG 343 (394)
T ss_dssp -TTSSCCCHHH---HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------STTTHHHH-----CCS
T ss_pred -hcCCCChHHH---HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CCeeEEcC-----Cce
Confidence 1111222221 33344554320 1136788888899999999999875100 01333322 234
Q ss_pred EEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHH
Q 037063 475 SLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFED 554 (588)
Q Consensus 475 iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eD 554 (588)
++.+. + ++.+.+.+++.++||.++. .+|+|++ .++.+|
T Consensus 344 ~~~~~--~-----~~~~~~~~~l~~~gi~v~~----------------------------------~~Ris~~-~~~~~~ 381 (394)
T 2ay1_A 344 MFSRL--G-----ATPEQVKRIKEEFGIYMVG----------------------------------DSRINIA-GLNDNT 381 (394)
T ss_dssp SEEEC--C-----CCHHHHHHHHHHHCEECCT----------------------------------TCEEEGG-GCCTTT
T ss_pred EEEee--C-----CCHHHHHHHHHhCCEEecC----------------------------------CCeEEee-cCCHhh
Confidence 43331 2 3356678888889998763 2699998 478999
Q ss_pred HHHHHHHHHHh
Q 037063 555 TYRLWAFVSRF 565 (588)
Q Consensus 555 v~~li~~l~~~ 565 (588)
++++++.|+++
T Consensus 382 i~~~~~~l~~~ 392 (394)
T 2ay1_A 382 IPILARAIIEV 392 (394)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999998875
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-18 Score=184.83 Aligned_cols=168 Identities=10% Similarity=0.046 Sum_probs=125.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHH-HHhcCCEEEEE
Q 037063 177 ESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIES-SKKRGARVSSA 254 (588)
Q Consensus 177 ~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~-a~~~G~~v~~v 254 (588)
.....++++++++++.|.+ .+++++|+++|+.++ ..+ +++||+|++ ...|++ .+..+... ++..|++++.+
T Consensus 65 ~~p~~~~l~~~la~l~g~~----~~~~~~sG~~Ai~~~-~~l-~~~gd~Vi~~~~~y~~-~~~~~~~~~~~~~g~~~~~v 137 (400)
T 3nmy_A 65 HNPTRFAYERCVAALEGGT----RAFAFASGMAATSTV-MEL-LDAGSHVVAMDDLYGG-TFRLFERVRRRTAGLDFSFV 137 (400)
T ss_dssp CCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHH-HTT-SCTTCEEEEESSCCHH-HHHHHHHTHHHHHCCEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCC----CEEEecCHHHHHHHH-HHH-cCCCCEEEEeCCCchH-HHHHHHHhhHhhcCeEEEEE
Confidence 3567789999999999984 266777779999984 566 789999765 445554 34443444 56779999999
Q ss_pred eccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCC
Q 037063 255 EFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLS 333 (588)
Q Consensus 255 ~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~ 333 (588)
+.+ |+++|+++|+ +++++|++++++|++|.+.|+++| ++|+++|+++|+|+++..+....+++
T Consensus 138 ~~~------d~~~l~~~i~--------~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~-- 201 (400)
T 3nmy_A 138 DLT------DPAAFKAAIR--------ADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLS-- 201 (400)
T ss_dssp CTT------SHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGG--
T ss_pred CCC------CHHHHHHHhc--------cCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChhh--
Confidence 874 7899999987 789999999999999999999999 99999999999999987552122332
Q ss_pred CCCCcEEEeccCccCCCCCCceEE--EEEeC-cchhcc
Q 037063 334 LFKPDFLICSFYKIFGENPSGFGC--LFVKK-SSASVL 368 (588)
Q Consensus 334 ~~~~D~vv~S~~K~~G~~P~G~G~--L~v~~-~~~~~l 368 (588)
+++|+++.|++|++|.+...+|. +++++ ++++.+
T Consensus 202 -~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l 238 (400)
T 3nmy_A 202 -LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQM 238 (400)
T ss_dssp -GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHH
T ss_pred -cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHH
Confidence 23999999999988731123444 44433 444444
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.4e-19 Score=186.81 Aligned_cols=173 Identities=13% Similarity=0.029 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHhCCCCCCceEEE--ecCHHHHHHHHHHhCCCCCCCeEEEcC--CCchhHHHHHH------HHHHhcCCE
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVF--TANQSSAFKLLAESYPFYSNPRLLTVY--DHENEAAALMI------ESSKKRGAR 250 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvf--t~g~T~al~lv~~s~~~~~gd~ll~~~--e~~s~~~~~~~------~~a~~~G~~ 250 (588)
.+++++.+|+++|++ ..+++ ++|+|+|+.+++.++ +++||+|++.. .|.. ....+. ..++..|++
T Consensus 61 ~~~Le~~lA~l~g~e---~alv~p~~~sGt~Ai~~al~al-l~~GD~Vl~~~~~~y~~-~~~~~~~~g~~~~~l~~~G~~ 135 (409)
T 3jzl_A 61 RDTLERVYATVFKTE---AALVRPQIISGTHAISTVLFGI-LRPDDELLYITGQPYDT-LEEIVGIRKQGQGSLKDFHIG 135 (409)
T ss_dssp HHHHHHHHHHHHTCS---EEEEETTSCSHHHHHHHHHHHH-CCTTCEEEECSSSCCTT-HHHHHTSSSSSSSCTGGGTCE
T ss_pred HHHHHHHHHHHhCCC---cEEEECCCccHHHHHHHHHHHh-cCCCCEEEEeCCCCcHh-HHHHHhcccchhhHHHHcCCE
Confidence 678899999999984 33665 899999999999999 89999987654 3433 222110 344677999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeC----CCCCCCccCCHHHH-HHHHH--cCcEEEEeCCCcC
Q 037063 251 VSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPL----QSKVTGARYSYMWM-SVAAE--KGWHVLLDATALG 323 (588)
Q Consensus 251 v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~----~sn~tG~~~pl~~I-~~a~~--~g~~vvvDaa~~~ 323 (588)
++.++.+ +++.+|+++|+++|+ ++|++|++.+ ++|+||.+.|+++| ++|++ +|+++++|+++..
T Consensus 136 ~~~v~~~-~~g~~d~e~l~~ai~--------~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~ 206 (409)
T 3jzl_A 136 YSSVPLL-ENGDVDFPRIAKKMT--------PKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGE 206 (409)
T ss_dssp EEECCCC-TTSCCCHHHHHHHCC--------TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCT
T ss_pred EEEeCCC-CCCCcCHHHHHHhcc--------CCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCccc
Confidence 9999997 678899999999998 7899999999 99999999999999 99999 9999999999776
Q ss_pred CC-CCCCCCCCCCCCcEEEeccCccCCCCC-CceEEEEEeCcchhcccC
Q 037063 324 SK-DMDTLGLSLFKPDFLICSFYKIFGENP-SGFGCLFVKKSSASVLSG 370 (588)
Q Consensus 324 ~~-d~~~l~l~~~~~D~vv~S~~K~~G~~P-~G~G~L~v~~~~~~~l~~ 370 (588)
+. ...++. .++|+++.|+||.+|.+. ...|+++.++++++.+..
T Consensus 207 ~~~~~~p~~---~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~ 252 (409)
T 3jzl_A 207 FVEYQEPPE---VGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGY 252 (409)
T ss_dssp TTSSCCSGG---GTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHH
T ss_pred ccccCCccc---cCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHH
Confidence 63 122222 348999999999887210 124999999888877654
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-18 Score=182.12 Aligned_cols=306 Identities=12% Similarity=-0.023 Sum_probs=193.1
Q ss_pred hHHHHHHHHHHHHHhC-CCCCCceEEEecCHHHHHHHHHHhCC--CC-----------CCCeEE-EcCCCchhHHHHHHH
Q 037063 178 SELESKIRKRIMDFMN-ISEDDYTLVFTANQSSAFKLLAESYP--FY-----------SNPRLL-TVYDHENEAAALMIE 242 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lg-a~~~e~~vvft~g~T~al~lv~~s~~--~~-----------~gd~ll-~~~e~~s~~~~~~~~ 242 (588)
.+...+++++++++++ .+++ .|+||+|+|+|+.+++.... .+ +|++|+ ....||.....++..
T Consensus 100 ~~~~~~la~~la~~~~~~~~~--~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~ 177 (449)
T 2cjg_A 100 SVAMARFVETFARVLGDPALP--HLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSL 177 (449)
T ss_dssp CHHHHHHHHHHHHHHCCTTCC--EEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGT
T ss_pred CHHHHHHHHHHHHhcCCCCCC--EEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhh
Confidence 3456788999999997 3343 59999999999999886431 11 277866 455566532222110
Q ss_pred H----HHhcCC-----EEEEEeccC--CCC-------ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---
Q 037063 243 S----SKKRGA-----RVSSAEFAW--PNL-------RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS--- 301 (588)
Q Consensus 243 ~----a~~~G~-----~v~~v~~~~--~~~-------~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p--- 301 (588)
. ..+.|. .+..+|.+. .+. .++.++|+++|++ ..+++++|++..++|++|.+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~-----~~~~~~~vi~ep~~~~~G~~~~~~~ 252 (449)
T 2cjg_A 178 TNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFET-----RPHDIACFVAEPIQGEGGDRHFRPE 252 (449)
T ss_dssp CCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHH-----STTTEEEEEECSEETTTTCEECCHH
T ss_pred cCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHh-----cCCceEEEEEeCcCCCCCCccCCHH
Confidence 0 011232 566666641 110 2455668888851 1257899999999999998777
Q ss_pred -HHHH-HHHHHcCcEEEEeCCCc-CCCCCC--CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCC
Q 037063 302 -YMWM-SVAAEKGWHVLLDATAL-GSKDMD--TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVS 376 (588)
Q Consensus 302 -l~~I-~~a~~~g~~vvvDaa~~-~~~d~~--~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~ 376 (588)
+++| ++|+++|+++|+|+++. ++..-. .+......+|+++ +.|.+ | +|++++++++++.+.+.+.+.
T Consensus 253 ~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t--~sK~l---~--iG~~~~~~~~~~~l~~~~~~~- 324 (449)
T 2cjg_A 253 FFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVA--FGKKT---Q--VCGVMAGRRVDEVADNVFAVP- 324 (449)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECGGG---S--SEEEEECGGGGGSTTCTTTST-
T ss_pred HHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEE--ecCcc---c--EEEEEECHHHhhhhhhcccCC-
Confidence 8888 99999999999999987 331101 1111123478775 55966 3 799999998877655432110
Q ss_pred ceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCC
Q 037063 377 TIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSET 456 (588)
Q Consensus 377 g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~ 456 (588)
+. ..+|.+...+ ..++..++|+.+.+ +.+.++++.+.+++++.|.++..
T Consensus 325 ~~----------------------~~~t~~~n~~-~~~aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~----- 373 (449)
T 2cjg_A 325 SR----------------------LNSTWGGNLT-DMVRARRILEVIEA---EGLFERAVQHGKYLRARLDELAA----- 373 (449)
T ss_dssp TS----------------------SCCSSSSCHH-HHHHHHHHHHHHHH---HTHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred cc----------------------cccCCCCCHH-HHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh-----
Confidence 00 0112111111 12455577777655 45678888888999998887510
Q ss_pred CCCe-EEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCC
Q 037063 457 GIPL-VRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNET 535 (588)
Q Consensus 457 g~~~-v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~ 535 (588)
+.+. +..+. ..|.++.+.+.+. .....+.+.|.++||.++.+.
T Consensus 374 ~~~~~~~~~~-----~~g~~~~~~~~~~----~~~~~~~~~l~~~Gv~v~~~g--------------------------- 417 (449)
T 2cjg_A 374 DFPAVVLDPR-----GRGLMCAFSLPTT----ADRDELIRQLWQRAVIVLPAG--------------------------- 417 (449)
T ss_dssp HSTTTSEEEE-----EETTEEEEECSSH----HHHHHHHHHHHHTTEECEEET---------------------------
T ss_pred hCCCceeeEe-----eccEEEEEEECCh----HHHHHHHHHHHHCCeEEecCC---------------------------
Confidence 0122 22221 2467888776531 124456666667899987641
Q ss_pred cCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 536 RSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 536 ~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
..+||+++++.++.|||+++++.|++++++
T Consensus 418 ---~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 418 ---ADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp ---TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 128999999999999999999999998754
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-17 Score=178.14 Aligned_cols=345 Identities=12% Similarity=0.036 Sum_probs=212.8
Q ss_pred CCeeeecCCCCCC------CCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGHGL------FSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~gl------~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+.-|+|.++... .++.+++++.+.+... .+. ... ....+...+
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~----------------------~~~------~~~~~~~~~ 90 (439)
T 3dxv_A 41 NGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANP--AGA----------------------TIL------SASNAPAVT 90 (439)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSC--SCS----------------------CSS------SSEEHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhc--cCc----------------------ccc------ccCCHHHHH
Confidence 5677999887654 6788888876665321 111 000 001467789
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCe-EEEcCCCchhHHHHHHHHHHhcCCE-----------
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPR-LLTVYDHENEAAALMIESSKKRGAR----------- 250 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~-ll~~~e~~s~~~~~~~~~a~~~G~~----------- 250 (588)
++++++++++...+ ..|+||+|+++|+.+++.... +.++++ |+....||......+ ...|..
T Consensus 91 l~~~la~~~~~~~~-~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~----~~~~~~~~~~~~~~~~~ 165 (439)
T 3dxv_A 91 LAERLLASFPGEGT-HKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSM----AFSGHSVQADAAKADGL 165 (439)
T ss_dssp HHHHHHHTTTCTTT-EEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHH----CC-------------CE
T ss_pred HHHHHHHhCCCCCC-CEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHH----hhcCCCchhhccccCCC
Confidence 99999999976542 259999999999999888631 124456 455666665333221 111211
Q ss_pred ---EEEEeccCCCCcc-----CHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEE
Q 037063 251 ---VSSAEFAWPNLRI-----HSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLL 317 (588)
Q Consensus 251 ---v~~v~~~~~~~~i-----~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvv 317 (588)
+..++.+ ..... |+++|+++|. +...+++++|++..+++++|.+.| +++| ++|+++|+++|+
T Consensus 166 ~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~----~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 240 (439)
T 3dxv_A 166 ILLPYPDPYR-PYRNDPTGDAILTLLTEKLA----AVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVC 240 (439)
T ss_dssp EEECCCCSSS-CBTTBTTSHHHHHHHHHHHH----TSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred CCCcEEcCCC-cccccccHHHHHHHHHHHHH----hcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 1233332 11111 5889999984 112267899999999999999999 9999 999999999999
Q ss_pred eCCCc-CCCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 318 DATAL-GSKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 318 Daa~~-~~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
|.++. ++.. ...++.....+|++ |+.|.+|. ..++|++++++++++.+.+...+
T Consensus 241 DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G~riG~~~~~~~~~~~~~~~~~~-------------------- 297 (439)
T 3dxv_A 241 DEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGG-GLPLSAVIAPAEILDCASAFAMQ-------------------- 297 (439)
T ss_dssp ECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TSCCEEEEEEHHHHTSCSSSSCC--------------------
T ss_pred eccccCCCcCchhhHHHhcCCCCCEE--EEcchhcC-CcceEEEEECHHHHhhhcCCCcC--------------------
Confidence 99975 2110 11111112337876 77898873 34689999999887766543221
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
+|. ...+ ..++..++|+.+.. +.+.++++.+.+++++.|.++... .+.+.... ..|.
T Consensus 298 --------~t~-~~~~-~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~-----~~g~ 354 (439)
T 3dxv_A 298 --------TLH-GNPI-SAAAGLAVLETIDR---DDLPAMAERKGRLLRDGLSELAKR-----HPLIGDIR-----GRGL 354 (439)
T ss_dssp --------TTT-TCHH-HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHH-----CTTEEEEE-----EETT
T ss_pred --------CCc-ccHH-HHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHh-----CCCeEEEE-----EEEE
Confidence 111 1111 12344456666554 445666667777777776654100 13333322 2467
Q ss_pred EEEEEeecCCC----CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC
Q 037063 475 SLAFNVFDWNG----TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT 550 (588)
Q Consensus 475 iv~f~~~~~~g----~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~ 550 (588)
++.+.+.+... .......+.+.|.++||.++.|.. ....||+++++..
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------------------------~~~~iRi~~~~~~ 406 (439)
T 3dxv_A 355 ACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGM----------------------------NGNVLEFTPPLTI 406 (439)
T ss_dssp EEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEEST----------------------------TSCEEEECCCTTC
T ss_pred EEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCC----------------------------CCCEEEEECCCCC
Confidence 77777632110 001234566666667999887621 1128999999999
Q ss_pred CHHHHHHHHHHHHHhhhh
Q 037063 551 NFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 551 t~eDv~~li~~l~~~l~~ 568 (588)
+.||++++++.|++++++
T Consensus 407 t~e~i~~~l~~l~~~l~~ 424 (439)
T 3dxv_A 407 TETDIHKALDLLDRAFSE 424 (439)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998865
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=181.82 Aligned_cols=293 Identities=11% Similarity=0.007 Sum_probs=191.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCe--EEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPR--LLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~--ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
....+++|+++++++|.+. .+|++|+|+|+.+++.++ .++||+ |++...++...... ...+...|++++.++
T Consensus 47 ~~~~~~l~~~la~~~~~~~----~i~~~~g~~a~~~a~~~~-~~~g~~~vvi~~~~~~~~~~~~-~~~~~~~g~~~~~v~ 120 (359)
T 3pj0_A 47 GAVIEDFETKIAKILGKQS----AVFFPSGTMAQQIALRIW-ADRKENRRVAYHPLSHLEIHEQ-DGLKELQQITPLLLG 120 (359)
T ss_dssp SHHHHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHH-HHHHTCCEEEECTTCHHHHSST-THHHHHHCCEEEECS
T ss_pred CHHHHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHH-HhcCCCcEEEEeccceeeehhc-chHHHhcCceEEecC
Confidence 3567799999999999852 466689999999999888 677887 55554444312111 122234599999888
Q ss_pred ccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCC-CccCCHHHH----HHHHHcCcEEEEeCCCcCC------
Q 037063 256 FAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVT-GARYSYMWM----SVAAEKGWHVLLDATALGS------ 324 (588)
Q Consensus 256 ~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~t-G~~~pl~~I----~~a~~~g~~vvvDaa~~~~------ 324 (588)
. +++.+|+++|+++ . +++++|+++.++|++ |..+|.+++ ++|+++|++||+|+++...
T Consensus 121 ~--~~~~~d~~~l~~~-~--------~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~ 189 (359)
T 3pj0_A 121 T--ANQLLTIDDIKSL-R--------EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQ 189 (359)
T ss_dssp C--TTSCCCHHHHHTC-S--------SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHT
T ss_pred C--cCCCcCHHHHHhc-c--------CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhC
Confidence 6 4678999998876 4 689999999998887 799997774 7789999999999986432
Q ss_pred CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCC--CCCCceEeeecCCCcccccccccccccccC
Q 037063 325 KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGST--SSVSTIMGIEPSFSEIIELETLDESSQSKF 402 (588)
Q Consensus 325 ~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~--~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~ 402 (588)
....++. ...|+++.|+||.+|. |.| |+++.++++++.+.... .+
T Consensus 190 ~~~~~~~---~~~d~~~~s~sK~~~~-~~g-g~~~~~~~l~~~~~~~~~~~~---------------------------- 236 (359)
T 3pj0_A 190 KSAEEIC---ALFDSVYVSFYKGIGG-IAG-AILAGNDDFVQEAKIWKRRYG---------------------------- 236 (359)
T ss_dssp CCHHHHH---TTCSEEEEESSSTTCC-SSC-EEEEECHHHHHHHHHHHHHTT----------------------------
T ss_pred CCHHHhh---ccCCEEEEeccccCCC-cce-EEEECCHHHHHHHHHHHHHhC----------------------------
Confidence 1111111 2379999999997774 666 88888888877664321 11
Q ss_pred CCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEe-CCCCCCCcccEEEEEee
Q 037063 403 PESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIY-GPKVMFDRGPSLAFNVF 481 (588)
Q Consensus 403 GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~-~p~~~~~rg~iv~f~~~ 481 (588)
++.........+++ .+++.. ++ ..++....++++.+.|.++ +++++. .| ..++++.+.+.
T Consensus 237 ~~~~~~~~~~~a~~-~~l~~~----~~-~~~~~~~~~~~l~~~L~~~---------~g~~~~~~~----~~~~~~~~~~~ 297 (359)
T 3pj0_A 237 GDLISLYPYILSAD-YYFEKR----IG-KMAEYFEAAKGLAERFNSC---------SGVKTVPEV----PVSNMFHVYFE 297 (359)
T ss_dssp CCCSCCHHHHHHHH-HHHHHH----GG-GHHHHHHHHHHHHHHHHTS---------TTEEEESSS----CSSSEEEEEES
T ss_pred CCcchhHHHHHHHH-HHHHHH----HH-HhHHHHHHHHHHHHHHhhC---------CCceeeccC----CcceEEEEEec
Confidence 00000011001111 333322 12 2334567788889999874 678875 23 34566666665
Q ss_pred cCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC---CCHHHHHHH
Q 037063 482 DWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL---TNFEDTYRL 558 (588)
Q Consensus 482 ~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~---~t~eDv~~l 558 (588)
... ..+...+.+.|.++||.++.|.... ..|...+|++++.- .+.|+++..
T Consensus 298 ~~~--~~~~~~l~~~l~~~GV~v~~g~~~~------------------------~~~~~~~r~~i~~~~~~~~~e~l~~~ 351 (359)
T 3pj0_A 298 NSA--DEIGAILTKIQDETGVGISGYLQEK------------------------SADVCAFEVSVGDAFAEIPAKNLELV 351 (359)
T ss_dssp SCH--HHHHHHHHHHHHHHCEECCSCCEEE------------------------ETTEEEEEEECCTTGGGSCHHHHHHH
T ss_pred Ccc--chhHHHHHHHHHhcCcEecCCcccc------------------------CCCceEEEEEecCccccCCHHHHHHH
Confidence 311 0234567888888999999874321 02334899988643 577888888
Q ss_pred HHHHHHh
Q 037063 559 WAFVSRF 565 (588)
Q Consensus 559 i~~l~~~ 565 (588)
++.|.+.
T Consensus 352 l~~l~~~ 358 (359)
T 3pj0_A 352 FRCLEKE 358 (359)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8877654
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-17 Score=177.86 Aligned_cols=350 Identities=10% Similarity=0.017 Sum_probs=214.6
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|||.++. |..++.+++++.+.+......++ +. ..+...+
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~------------------------------~~-~~~~~~~ 89 (433)
T 1zod_A 41 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFS------------------------------EM-LSRPVVD 89 (433)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCT------------------------------TC-CCHHHHH
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCccccc------------------------------cc-CCHHHHH
Confidence 56789998432 33478889888766532111000 00 1345678
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEE-EcCCCchhHHHHHHHHHH--------hcCCEEEE
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLL-TVYDHENEAAALMIESSK--------KRGARVSS 253 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll-~~~e~~s~~~~~~~~~a~--------~~G~~v~~ 253 (588)
++++++++++++++ .|+||+|+++|+.+++..+. +..+++|+ ....||......+ .... .....+..
T Consensus 90 l~~~la~~~~~~~~--~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~ 166 (433)
T 1zod_A 90 LATRLANITPPGLD--RALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAA-SATYSAGRKGVGPAAVGSFA 166 (433)
T ss_dssp HHHHHHHHSCTTCC--EEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHH-HTCCSSCCSSSCCCCTTEEE
T ss_pred HHHHHHHhCCCCcC--EEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHH-hhcCCccccccCCCCCCceE
Confidence 88999999998655 49999999999999987541 12346665 4445664232221 1100 00123444
Q ss_pred EeccCC-----------CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEE
Q 037063 254 AEFAWP-----------NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLL 317 (588)
Q Consensus 254 v~~~~~-----------~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvv 317 (588)
++++.. .+.+++++|+++|++ ...+++++|++..++|+||.+.| +++| ++|+++|+++|+
T Consensus 167 v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~----~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 242 (433)
T 1zod_A 167 IPAPFTYRPRFERNGAYDYLAELDYAFDLIDR----QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLIL 242 (433)
T ss_dssp ECCCCTTSCCCEETTEECHHHHHHHHHHHHHH----HCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEE
T ss_pred ecCCcccccccCCchhhhHHHHHHHHHHHHHh----cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Confidence 544210 012468899998872 11136788888877888998877 9999 999999999999
Q ss_pred eCCCc-CCCCCC--CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 318 DATAL-GSKDMD--TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 318 Daa~~-~~~d~~--~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
|+++. ++..-. .++.....+|++ ++.|.||. +.++|++++++++++.+.+....
T Consensus 243 DEv~~~~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G~~ig~~~~~~~~~~~~~~~~~~-------------------- 299 (433)
T 1zod_A 243 DEAQTGVGRTGTMFACQRDGVTPDIL--TLSKTLGA-GLPLAAIVTSAAIEERAHELGYL-------------------- 299 (433)
T ss_dssp ECTTTTTTTTSSSSTHHHHTCCCSEE--EECHHHHT-TSSCEEEEECHHHHHHHHHTTCC--------------------
T ss_pred eccccCCCcCchHhHHhhcCCCCCEE--EecccccC-CCCeeEEEEhHHHHHhhccCCCC--------------------
Confidence 99977 431101 111112237865 66698774 46699999999887766431100
Q ss_pred cccccccCCCC--CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc
Q 037063 395 DESSQSKFPES--SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR 472 (588)
Q Consensus 395 ~~~~f~e~GT~--~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r 472 (588)
..+|. +..+ .++..++|+.+.+. .+.++++.+.+++++.|.++.. ..+.+..+. ..
T Consensus 300 ------~~~t~~~~~~~---~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~l~~-----~~~~~~~~~-----~~ 357 (433)
T 1zod_A 300 ------FYTTHVSDPLP---AAVGLRVLDVVQRD---GLVARANVMGDRLRRGLLDLME-----RFDCIGDVR-----GR 357 (433)
T ss_dssp ------CCCTTTTCHHH---HHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHH-----HCTTEEEEE-----EE
T ss_pred ------CCCCCCcCHHH---HHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHH-----hCCCeEEEE-----EE
Confidence 01111 2222 24455777776653 3567777888888888876510 013333221 24
Q ss_pred ccEEEEEeecCC--CC--CcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCC
Q 037063 473 GPSLAFNVFDWN--GT--RIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGC 548 (588)
Q Consensus 473 g~iv~f~~~~~~--g~--~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~ 548 (588)
|.++.+.+.+.. +. ......+.+.|.++||.++.|... .+..+||+++++
T Consensus 358 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--------------------------~~~~~lRi~~~~ 411 (433)
T 1zod_A 358 GLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLP--------------------------GMGGVFRIAPPL 411 (433)
T ss_dssp TTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCT--------------------------TSCCEEEECCCT
T ss_pred EEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCC--------------------------CCCCEEEEECCc
Confidence 677777765310 00 012455666666889999876311 111289999999
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 037063 549 LTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 549 ~~t~eDv~~li~~l~~~l~~ 568 (588)
..+.+|++++++.|++++++
T Consensus 412 ~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 412 TVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999988754
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.6e-21 Score=201.70 Aligned_cols=300 Identities=12% Similarity=0.130 Sum_probs=193.2
Q ss_pred HHHHHHHHHH----hC--CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcC-CCchhHHHHHHHHHHhcCCEEEEE
Q 037063 182 SKIRKRIMDF----MN--ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVY-DHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 182 ~~~r~~ia~~----lg--a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~-e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
.++|+.++++ +| ++++ .|++|+|+++|+.+++.++ .++||+|++.. .|++ . ...++..|++++.+
T Consensus 69 ~~l~~~la~~l~~~~g~~~~~~--~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~~~~-~----~~~~~~~g~~~~~~ 140 (392)
T 3b1d_A 69 DELLQAVLDWEKSEHQYSFDKE--DIVFVEGVVPAISIAIQAF-TKEGEAVLINSPVYPP-F----ARSVRLNNRKLVSN 140 (392)
Confidence 3455555554 45 4444 4999999999999999998 88999976543 3442 2 34456679999998
Q ss_pred eccCCC--CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC---HHHH-HHHHHcCcEEEEeCCCcCCC---
Q 037063 255 EFAWPN--LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS---YMWM-SVAAEKGWHVLLDATALGSK--- 325 (588)
Q Consensus 255 ~~~~~~--~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p---l~~I-~~a~~~g~~vvvDaa~~~~~--- 325 (588)
+.+..+ ..+|+++|++++++ .++++|++++++|+||..+| +++| ++|+++|+++|+|+++....
T Consensus 141 ~~~~~~g~~~~d~~~l~~~l~~-------~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g 213 (392)
T 3b1d_A 141 SLKEENGLFQIDFEQLENDIVE-------NDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFG 213 (392)
Confidence 885232 34888999988862 46789999999999999998 6667 88999999999999965420
Q ss_pred -CCCC-CCCCC--CCCcEEEeccCccCCCCCCceEEEEEeCc-chhcccCCCCCCCceEeeecCCCcccccccccccccc
Q 037063 326 -DMDT-LGLSL--FKPDFLICSFYKIFGENPSGFGCLFVKKS-SASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS 400 (588)
Q Consensus 326 -d~~~-l~l~~--~~~D~vv~S~~K~~G~~P~G~G~L~v~~~-~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~ 400 (588)
...+ ..+.. ...++++.|++|.+|.+..++|+++++++ +++.+.......
T Consensus 214 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~------------------------- 268 (392)
T 3b1d_A 214 HEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVN------------------------- 268 (392)
Confidence 0111 11111 33568899999988843446899998754 666554432110
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE-EE
Q 037063 401 KFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA-FN 479 (588)
Q Consensus 401 e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~-f~ 479 (588)
..++.+.... +++.++|+.... .++++.++.+.+++++.+.|.+. .|+++++.+ .++++. +.
T Consensus 269 ~~~~~~~~~~---~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~--------~~~~~~~~~-----~~~~~~~i~ 331 (392)
T 3b1d_A 269 NHHEVSSLGY---IATETAYRYGKP-WLVALKAVLEENIQFAVEYFAQE--------APRLKVMKP-----QGTYLIWLD 331 (392)
Confidence 0011122211 223344443222 25677777888888888888761 245665543 344443 44
Q ss_pred eecCCCCCcCHHHHHHHH-HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHH
Q 037063 480 VFDWNGTRIDPALVQKLA-DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRL 558 (588)
Q Consensus 480 ~~~~~g~~i~~~~v~~~l-~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~l 558 (588)
+... + .+...+.+.| +++||.+++|..+.+ .+.+++|++++. +.|+|+++
T Consensus 332 ~~~~-~--~~~~~l~~~l~~~~gi~v~~g~~f~~------------------------~~~~~iRi~~~~--~~e~i~~~ 382 (392)
T 3b1d_A 332 FSDY-G--LTDDALFTLLHDQAKVILNRGSDYGS------------------------EGELHARLNIAA--PKSLVEEI 382 (392)
Confidence 4321 1 2344455555 588999988744310 112389999875 57999999
Q ss_pred HHHHHHhhh
Q 037063 559 WAFVSRFLD 567 (588)
Q Consensus 559 i~~l~~~l~ 567 (588)
++.|+++++
T Consensus 383 l~~l~~~l~ 391 (392)
T 3b1d_A 383 CKRIVCCLP 391 (392)
Confidence 999988764
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-18 Score=179.31 Aligned_cols=293 Identities=10% Similarity=-0.004 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC--eEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP--RLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd--~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
....++++++++++|.+ . .++++|+|+|+.+++.++ .++|| .|++...+|...+.. ...+...|++++.++.
T Consensus 47 ~~~~~l~~~la~~~~~~---~-~i~~~~G~~a~~~al~~~-~~~gd~~~vi~~~~~~~~~~~~-~~~~~~~g~~~~~v~~ 120 (357)
T 3lws_A 47 AIIEPFEQKFADVLGMD---D-AVFFPSGTMAQQVALRIW-SDETDNRTVAYHPLCHLEIHEQ-DGLKELHPIETILVGA 120 (357)
T ss_dssp TTHHHHHHHHHHHHTCS---E-EEEESCHHHHHHHHHHHH-HHHHTCCEEEECTTCHHHHSST-THHHHHSSCEEEECSC
T ss_pred hHHHHHHHHHHHHhCCC---c-EEEecCcHHHHHHHHHHH-hhcCCCcEEEecccceeeeecc-chhhhccCcEEEEecC
Confidence 34568999999999984 2 466688899999988887 67788 566654444312211 1233456999988875
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCC-CccCC---HHHH-HHHHHcCcEEEEeCCCc---C---CC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVT-GARYS---YMWM-SVAAEKGWHVLLDATAL---G---SK 325 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~t-G~~~p---l~~I-~~a~~~g~~vvvDaa~~---~---~~ 325 (588)
+++.+|+++|+++ . ++++|+++.++|++ |..+| +++| ++|+++|++||+|+++. . +.
T Consensus 121 --~~~~~d~~~l~~~-~---------~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~ 188 (357)
T 3lws_A 121 --ADRLMTLDEIKAL-P---------DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEK 188 (357)
T ss_dssp --TTSCCCHHHHHTC-C---------SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC
T ss_pred --CCCCcCHHHHhcC-c---------CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCC
Confidence 4567999888754 2 28999999999998 99998 5567 88999999999999865 1 21
Q ss_pred CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 326 DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 326 d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
....+. ..+|.++.|++|.++. |.| |+++.++++++.+...... ..++.
T Consensus 189 ~~~~~~---~~~d~~~~s~sK~~~~-~~g-g~~~~~~~~~~~~~~~~~~--------------------------~~~~~ 237 (357)
T 3lws_A 189 TAAEIA---GLFDSIYISFYKGLGG-IAG-AILAGPAAFCQTARIWKRR--------------------------YGGDL 237 (357)
T ss_dssp CHHHHH---TTSSEEEEESSSTTCC-SSC-EEEEECHHHHHHHHHHHHH--------------------------TTCCC
T ss_pred ChHHHH---hcCCEEEEeccccCCC-Cce-EEEEcCHHHHHHHHHHHHH--------------------------hcCCc
Confidence 111221 2378999999998853 778 9999888887665422100 00001
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEe-CCCCCCCcccEEEEEeecCC
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIY-GPKVMFDRGPSLAFNVFDWN 484 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~-~p~~~~~rg~iv~f~~~~~~ 484 (588)
....... ++...+|+.. ++.+ ++..+.++++.+.|.++ +++++. .| ..+.++.+.+.+..
T Consensus 238 ~~~~~~~-~~~~~~l~~~----~~~~-~~~~~~~~~l~~~L~~~---------~g~~~~~~~----~~~~~~~~~~~~~~ 298 (357)
T 3lws_A 238 ISLYPYI-VSADYYYELR----KDRM-GQYYEQAKQLAEQFNAL---------PGVHTTPEV----PVSNMFHLHFDGQA 298 (357)
T ss_dssp SCCHHHH-HHHHHHHHHH----TTCH-HHHHHHHHHHHHHHHTS---------TTEEEESSS----CSSSEEEEEEESCH
T ss_pred ccchHHH-HHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHhC---------CCCeeccCC----CcceEEEEEecCCh
Confidence 1011100 1112344331 1222 23456678888888874 678874 33 34677777776420
Q ss_pred CCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC---CCHHHHHHHHHH
Q 037063 485 GTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL---TNFEDTYRLWAF 561 (588)
Q Consensus 485 g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~---~t~eDv~~li~~ 561 (588)
..+...+.+.|.++||.++.|.... .|...+|++++.. .+.++++..++.
T Consensus 299 --~~~~~~~~~~l~~~Gi~v~~g~~~~-------------------------~~~~~~r~~i~~~~~~~~~~~l~~al~~ 351 (357)
T 3lws_A 299 --ADISPKLEQVQEETGLGFVGYLVDK-------------------------DGYCSTEISVGDAYGELDQQTRDAGFAR 351 (357)
T ss_dssp --HHHHHHHHHHHHHHCEESCSCCEEC-------------------------SSEEEEEEEBCTTGGGSCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhcCeEEecccccC-------------------------CCceEEEEEecchhhhcCHHHHHHHHHH
Confidence 0124567788888999999873210 2333899998854 477888888887
Q ss_pred HHHhh
Q 037063 562 VSRFL 566 (588)
Q Consensus 562 l~~~l 566 (588)
|.+.+
T Consensus 352 l~~al 356 (357)
T 3lws_A 352 LRQAF 356 (357)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 77654
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=178.28 Aligned_cols=356 Identities=11% Similarity=-0.023 Sum_probs=204.1
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+.-|||..+. |..++.+++++.+.+.......+ . . ...+...+
T Consensus 27 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~------------------------~-~-----~~~~~~~~ 76 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHG------------------------S-Q-----FSSDVLEE 76 (430)
T ss_dssp TSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCT------------------------T-T-----CEEHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccc------------------------c-c-----cCCHHHHH
Confidence 56779998774 33488888888666532111000 0 0 01456678
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCC--------CCCCeEE-EcCCCchhHHHHHHHHHHhcC------
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPF--------YSNPRLL-TVYDHENEAAALMIESSKKRG------ 248 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~--------~~gd~ll-~~~e~~s~~~~~~~~~a~~~G------ 248 (588)
++++++++++.++++ |+||+|+++|+.+++..+ . ..+++|+ ....||...... ........
T Consensus 77 l~~~la~~~~~~~~~--v~~~~gg~ea~~~al~~~-~~~~~~~g~~~~~~vi~~~~~yhg~~~~~-~~~~~~~~~~~~~~ 152 (430)
T 3i4j_A 77 YAGRLARFVGLPTFR--FWAVSGGSEATESAVKLA-RQYHVERGEPGRFKVITRVPSYHGASLGS-LAASGMGARRELYT 152 (430)
T ss_dssp HHHHHHHHTTCTTCE--EEEESSHHHHHHHHHHHH-HHHHHHTTCTTCCEEEEETTC-----------------------
T ss_pred HHHHHHHhCCCCCCE--EEEeCcHHHHHHHHHHHH-HHHHHhcCCCCCcEEEEEeCCcCCCCccc-ccccCccccccccC
Confidence 999999999987654 999999999999988876 3 2356765 455555422111 11100000
Q ss_pred ---C--EEEEEeccCCC---CccCHHHHHHHHhhhccccCCCcceEEEEeCCCC-CCCccCC----HHHH-HHHHHcCcE
Q 037063 249 ---A--RVSSAEFAWPN---LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSK-VTGARYS----YMWM-SVAAEKGWH 314 (588)
Q Consensus 249 ---~--~v~~v~~~~~~---~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn-~tG~~~p----l~~I-~~a~~~g~~ 314 (588)
. .+..++.+ .. +..+.++|+++|++ ...+++++|++..+++ ++|.+.+ +++| ++|+++|++
T Consensus 153 ~~~~~~~~~~~~~~-~~~~~~~~~~~~le~~l~~----~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~ 227 (430)
T 3i4j_A 153 PLMRPEAWPKLPKP-DPARNGAEDAEGLRALLER----EGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGII 227 (430)
T ss_dssp ---CGGGSCEECCC-CTTSCHHHHHTHHHHHHHH----HCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCE
T ss_pred CcCCCCCceEcCCC-cccchhhHHHHHHHHHHHh----cCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence 0 23334432 11 23456889998872 1114578888888888 9999888 9999 999999999
Q ss_pred EEEeCCCc-CCCC--CCCCCCC-CCCCcEEEeccCccCCCCC-CceEEEEEeCcchhcccCCCCCCCceEeeecCCCccc
Q 037063 315 VLLDATAL-GSKD--MDTLGLS-LFKPDFLICSFYKIFGENP-SGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEII 389 (588)
Q Consensus 315 vvvDaa~~-~~~d--~~~l~l~-~~~~D~vv~S~~K~~G~~P-~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~ 389 (588)
+|+|.++. ++.. ...+..- ...+|+++ +.|.+|. . ..+|++++++++++.+.+....
T Consensus 228 li~DEv~~~~~~~g~~~~~~~~~~~~~di~t--~sK~l~~-G~~r~G~~~~~~~i~~~~~~~~~~--------------- 289 (430)
T 3i4j_A 228 FIADEVMSGMGRCGSPLALSRWSGVTPDIAV--LGKGLAA-GYAPLAGLLAAPQVYETVMGGSGA--------------- 289 (430)
T ss_dssp EEEECTTTTTTTTSSSSGGGGTTTCCCSEEE--ECGGGTT-TSSCCEEEEECHHHHHHHHHTTCB---------------
T ss_pred EEEechhhCCCcccchhhhhhhcCCCCcEEE--EcccccC-CccccEEEEECHHHHHHHhccCCc---------------
Confidence 99999865 3211 1111111 22378765 5598873 3 4589999999888766532100
Q ss_pred ccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCC
Q 037063 390 ELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVM 469 (588)
Q Consensus 390 ~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~ 469 (588)
+...+|.+...+ ..++..++|+.++. +.+.++++++.+++++.|.++.. ..+.+..+.
T Consensus 290 ---------~~~~~t~~~~~~-~~aaa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~---- 347 (430)
T 3i4j_A 290 ---------FMHGFTYAGHPV-SVAAGLSVLDIVER---EDLTGAAKERGAQLLAGLQALQA-----RFPQMMQVR---- 347 (430)
T ss_dssp ---------CCCCCTTTTCHH-HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHH-----HCTTEEEEE----
T ss_pred ---------ccccCCCCCCHH-HHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHH-----hCCCeEEEE----
Confidence 000111111111 12344566776654 33445555555555555554310 024454432
Q ss_pred CCcccEEEEEeecCCCC-----CcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEE
Q 037063 470 FDRGPSLAFNVFDWNGT-----RIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTA 544 (588)
Q Consensus 470 ~~rg~iv~f~~~~~~g~-----~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRv 544 (588)
..|.++.+.+.+.... ......+.+.|.++||.++.+.... .. .+...+|+
T Consensus 348 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~---------------~~--------~~~~~iRi 403 (430)
T 3i4j_A 348 -GTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAE---------------PN--------GRGDHLLL 403 (430)
T ss_dssp -EETTEEEEEEC------------CHHHHHHHHHHTTEECC----------------------------------CEEEE
T ss_pred -EEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEeccccc---------------CC--------CCCCEEEE
Confidence 2467777776542110 0113556777778999998752210 00 11238999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 545 ALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 545 Slg~~~t~eDv~~li~~l~~~l~~ 568 (588)
++++..+.||++++++.|++++++
T Consensus 404 ~~~~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 404 GPPLSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998875
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=186.42 Aligned_cols=287 Identities=12% Similarity=0.026 Sum_probs=185.6
Q ss_pred HHHHHHHHHHhC------CCCCCceEEEecCHHHHHHHHHHhCC-------CCCCCeEEEcCCCchhHHHHHHHHHHhcC
Q 037063 182 SKIRKRIMDFMN------ISEDDYTLVFTANQSSAFKLLAESYP-------FYSNPRLLTVYDHENEAAALMIESSKKRG 248 (588)
Q Consensus 182 ~~~r~~ia~~lg------a~~~e~~vvft~g~T~al~lv~~s~~-------~~~gd~ll~~~e~~s~~~~~~~~~a~~~G 248 (588)
.++|+.|+++++ ++++ .|++|+|+++++.+++.++. +++||+|++....+... ...++..|
T Consensus 103 ~~lr~aia~~~~~~~~~~~~~~--~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~----~~~~~~~g 176 (427)
T 2hox_A 103 FELEKTIKELHEVVGNAAAKDR--YIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVF----REQTKYFD 176 (427)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTC--EEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHH----HHHHHHSC
T ss_pred HHHHHHHHHHHHHhCCcCCCCC--EEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccH----HHHHHHcC
Confidence 477888888875 5554 49999999999999999984 78999987665554322 34456678
Q ss_pred CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHHHHHHHcCcEEEEeCCCcCC-CCC
Q 037063 249 ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWMSVAAEKGWHVLLDATALGS-KDM 327 (588)
Q Consensus 249 ~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I~~a~~~g~~vvvDaa~~~~-~d~ 327 (588)
++++... +|.++|+++++ +++++|++++++||||.+++ +.+ + ++.++.|.+.+-+ ..+
T Consensus 177 ~~~~~~~-------~d~~~l~~~~~--------~~~k~v~l~~p~NPtG~~~~-~~l---~--~~~~i~d~~~~~~~~s~ 235 (427)
T 2hox_A 177 KKGYVWA-------GNAANYVNVSN--------PEQYIEMVTSPNNPEGLLRH-AVI---K--GCKSIYDMVYYWPHYTP 235 (427)
T ss_dssp BTTEEEE-------EEGGGGTTCSC--------GGGEEEEEESSCTTTCCCCC-CSS---T--TCEEEEECTTCSTTTSC
T ss_pred Ceeeeec-------CCHHHHHHhhc--------CCceEEEEcCCCCCcccccH-HHH---c--CCCEEEeecccCCCCCc
Confidence 8776433 45677777665 57899999999999999999 433 2 5678889875532 112
Q ss_pred CCCCCCCCCCcEEEeccCccCCCCCCceEEEEEe-CcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 328 DTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVK-KSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 328 ~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~-~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
..+ . ...|+++.|++|.+|.+...+|+++++ +++++.+....... ..+++.
T Consensus 236 ~~~--~-~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~-------------------------~~~~~~ 287 (427)
T 2hox_A 236 IKY--K-ADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKN-------------------------TEGTPR 287 (427)
T ss_dssp CCS--C-BCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHH-------------------------TSSCCH
T ss_pred ccc--C-CCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhc-------------------------CCCCCH
Confidence 222 2 347999999999999422238999995 67766665332110 112222
Q ss_pred ccchhhHHHHHHHHHHHHH-h-----C----HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEE--eC-CCC-----
Q 037063 407 ISGVSSKLVECKGLDHADA-L-----G----LILISNRARYLINWLANALMNLHHPHSETGIPLVRI--YG-PKV----- 468 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~-~-----G----~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i--~~-p~~----- 468 (588)
+.+. ++..+|+...+ + + ++...++++...+++.+.|+++ +++++ +. |..
T Consensus 288 ~~q~----a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------~g~~~~~~~~~~~~~~~~ 354 (427)
T 2hox_A 288 ETQL----RSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQS---------DRFSYQELPQSEYCNYFR 354 (427)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTS---------SSEECCCCCSCEEETTTT
T ss_pred HHHH----HHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhC---------cCcccccccccccccccc
Confidence 2222 22234432110 0 1 3456677778888899988874 45554 22 210
Q ss_pred -CCCccc-EEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec
Q 037063 469 -MFDRGP-SLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL 546 (588)
Q Consensus 469 -~~~rg~-iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl 546 (588)
....++ .+-+.+.. + ..+.+.++++++||.+++|..|. .+.++||+|+
T Consensus 355 ~~~p~~g~f~~~~~~~-~----~~~~~~~ll~~~gI~v~pg~~f~-------------------------~~~~~~Ris~ 404 (427)
T 2hox_A 355 RMRPPSPSYAWVKCEW-E----EDKDCYQTFQNGRINTQNGVGFE-------------------------ASSRYVRLSL 404 (427)
T ss_dssp EEECCCCSEEEEEECS-G----GGCSHHHHHHHTTEECEEGGGGT-------------------------SCTTEEEEEC
T ss_pred ccCCCCceEEEEECCC-c----HHHHHHHHHHHCCEEEcCCCccC-------------------------CCCCEEEEEe
Confidence 012234 44445543 1 12335667778999999986652 1123899999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhh
Q 037063 547 GCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 547 g~~~t~eDv~~li~~l~~~l~~ 568 (588)
+ ++.|+++++++.|++++++
T Consensus 405 ~--~~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 405 I--KTQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp S--SCHHHHHHHHHHHHHHHTC
T ss_pred c--CCHHHHHHHHHHHHHHHhh
Confidence 8 4889999999999998754
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-16 Score=172.05 Aligned_cols=352 Identities=11% Similarity=0.050 Sum_probs=214.2
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+.-|||..+. |.-++.+++++.+.+..... .+ . ....+...+
T Consensus 47 ~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-~~------------------------~------~~~~~~~~~ 95 (452)
T 3n5m_A 47 QGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY-FP------------------------M------SQSHEPAIK 95 (452)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC-CC------------------------T------TSEEHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC-cc------------------------c------ccCCHHHHH
Confidence 56789998665 44578899988766632111 00 0 001466779
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCC-----C---CCCeEE-EcCCCchhHHHHHHHHHHhcC------
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPF-----Y---SNPRLL-TVYDHENEAAALMIESSKKRG------ 248 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~-----~---~gd~ll-~~~e~~s~~~~~~~~~a~~~G------ 248 (588)
++++++++++.+.+ |+||+|+|+|+..++..+ . + ++++|+ ....||......+ ...|
T Consensus 96 la~~l~~~~~~~~~---v~~~~ggseA~~~al~~~-~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~----~~~~~~~~~~ 167 (452)
T 3n5m_A 96 LAEKLNEWLGGEYV---IFFSNSGSEANETAFKIA-RQYYAQKGEPHRYKFMSRYRGYHGNTMATM----AATGQAQRRY 167 (452)
T ss_dssp HHHHHHHHHTSCEE---EEEESSHHHHHHHHHHHH-HHHHHTTTCTTCCEEEEETTCCCCSSHHHH----HSCCCGGGTT
T ss_pred HHHHHHHhCCCCce---EEEeCchHHHHHHHHHHH-HHHHHhcCCCCCCEEEEECCCcCCCCHHHH----hcCCchhhcc
Confidence 99999999987532 999999999999988876 3 3 567765 5556664222211 1111
Q ss_pred ------CEEEEEeccCCCCcc---C---------HHHHHHHHhhhccccCCCcceEEEEeCC-CCCCCccCC----HHHH
Q 037063 249 ------ARVSSAEFAWPNLRI---H---------SGKLMKKIVGKRKKKKKKKRGLFVFPLQ-SKVTGARYS----YMWM 305 (588)
Q Consensus 249 ------~~v~~v~~~~~~~~i---~---------~e~l~~~i~~~~~~~~~~~t~Lv~~~~~-sn~tG~~~p----l~~I 305 (588)
..+..++.. ...+. + .++|+++|++ ...+++++|++..+ +| +|.+.| +++|
T Consensus 168 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~~l~~----~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l 241 (452)
T 3n5m_A 168 QYEPFASGFLHVTPP-DCYRMPGIERENIYDVECVKEVDRVMTW----ELSETIAAFIMEPIITG-GGILMAPQDYMKAV 241 (452)
T ss_dssp TTCCCCSCEEEECCC-CTTTSTTTTTSCGGGCHHHHHHHHHHHH----HCGGGEEEEEECSSBTT-TTCBCCCTTHHHHH
T ss_pred ccCCCCCCCeEeCCC-ccccCccCCchhhHHHHHHHHHHHHHHh----cCCCCEEEEEEccccCC-CCeeeCCHHHHHHH
Confidence 124444432 11111 1 7889988861 11246888999888 89 999998 9999
Q ss_pred -HHHHHcCcEEEEeCCCc-CCCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEee
Q 037063 306 -SVAAEKGWHVLLDATAL-GSKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGI 381 (588)
Q Consensus 306 -~~a~~~g~~vvvDaa~~-~~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~ 381 (588)
++|+++|+++|+|.++. ++.. ..........+|+++ +.|.+|.++.++|++++++++++.+...... +
T Consensus 242 ~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t--~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~--~---- 313 (452)
T 3n5m_A 242 HETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIIT--MAKGITSAYLPLSATAVKREIYEAFKGKGEY--E---- 313 (452)
T ss_dssp HHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGTTSSCCEEEEEEHHHHGGGCSSSTT--C----
T ss_pred HHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEe--ecccccCCCcceEEEEECHHHHHHHhhccCC--C----
Confidence 99999999999999965 3211 111111122378765 5697764226789999999988877541100 0
Q ss_pred ecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE
Q 037063 382 EPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV 461 (588)
Q Consensus 382 ~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v 461 (588)
.+...+|.+...+. .++..++|+.++. +.+.++++++.+++++.|.++.. +.+.+
T Consensus 314 ----------------~~~~~~t~~~~~~~-~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~-----~~~~~ 368 (452)
T 3n5m_A 314 ----------------FFRHINTFGGNPAA-CALALKNLEIIEN---ENLIERSAQMGSLLLEQLKEEIG-----EHPLV 368 (452)
T ss_dssp ----------------SCCCCCSSTTCHHH-HHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHT-----TCTTE
T ss_pred ----------------CccccCCCCCCHHH-HHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh-----cCCCe
Confidence 00011222222221 2344466766654 34566666777777777765411 12334
Q ss_pred EEeCCCCCCCcccEEEEEeecCCC--CCcC---HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCc
Q 037063 462 RIYGPKVMFDRGPSLAFNVFDWNG--TRID---PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETR 536 (588)
Q Consensus 462 ~i~~p~~~~~rg~iv~f~~~~~~g--~~i~---~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~ 536 (588)
..+. ..|.++.+.+.+... ..++ ...+.+.|.++||.++++..+.+
T Consensus 369 ~~~~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~------------------------ 419 (452)
T 3n5m_A 369 GDIR-----GKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTA------------------------ 419 (452)
T ss_dssp EEEE-----ESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSST------------------------
T ss_pred EEEE-----EEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccC------------------------
Confidence 3322 245667776642111 1111 13466777788999987643311
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 537 SGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 537 ~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.+...||+++++..|.|||+++++.|++++++
T Consensus 420 ~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 420 GYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp TCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 11239999999999999999999999998763
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-17 Score=176.75 Aligned_cols=346 Identities=12% Similarity=0.046 Sum_probs=210.4
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|||..+. |.-++.+++++.+.+.......+ .. . + ..+...+
T Consensus 48 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~-----------------------~~-~---~--~~~~~~~ 98 (459)
T 4a6r_A 48 EGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNT-----------------------FF-K---T--THPAVVE 98 (459)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCT-----------------------TS-S---S--CCHHHHH
T ss_pred CCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhcccccc-----------------------cc-c---c--CCHHHHH
Confidence 56789998764 44578889988766643111110 00 0 0 1456678
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCC--------CCCeEE-EcCCCchhHHHHHHHHH---------H
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFY--------SNPRLL-TVYDHENEAAALMIESS---------K 245 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~--------~gd~ll-~~~e~~s~~~~~~~~~a---------~ 245 (588)
++++++++++.+.+. |+||+|+++|+..++..+ .+ ++++|+ ....||......+ ... .
T Consensus 99 la~~l~~~~~~~~~~--v~~~~ggseA~~~al~~~-~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~ 174 (459)
T 4a6r_A 99 LSSLLAEVTPAGFDR--VFYTNSGSESVDTMIRMV-RRYWDVQGKPEKKTLIGRWNGYHGSTIGGA-SLGGMKYMHEQGD 174 (459)
T ss_dssp HHHHHHHHSCTTCCE--EEEESSHHHHHHHHHHHH-HHHHHHTTCTTCCEEEEETTCCCCSSHHHH-HHSCCTTTC---C
T ss_pred HHHHHHHhCCCCCCE--EEEeCchHHHHHHHHHHH-HHHHHhcCCCCCCEEEEECCCcCCccHHHH-hhcCChhhccccC
Confidence 999999999876654 999999999999988876 33 356665 4555664232211 110 0
Q ss_pred hcCCEEEEEeccC----CCCccC--------HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHH
Q 037063 246 KRGARVSSAEFAW----PNLRIH--------SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVA 308 (588)
Q Consensus 246 ~~G~~v~~v~~~~----~~~~i~--------~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a 308 (588)
.....+..++... .+. ++ .++|+++|.+ ...+++++|++..+++.+|.+.| +++| ++|
T Consensus 175 ~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~----~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 249 (459)
T 4a6r_A 175 LPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILE----IGADKVAAFVGEPIQGAGGVIVPPATYWPEIERIC 249 (459)
T ss_dssp CSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred CCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHH----cCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHH
Confidence 1112344555321 111 34 6788888862 11246788888888999999998 9999 999
Q ss_pred HHcCcEEEEeCCCc-CCCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhccc---CCCCCCCceEeee
Q 037063 309 AEKGWHVLLDATAL-GSKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLS---GSTSSVSTIMGIE 382 (588)
Q Consensus 309 ~~~g~~vvvDaa~~-~~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~---~~~~g~~g~v~~~ 382 (588)
+++|+++|+|.++. ++.. ..........+|++++ .|.+|.+..++|++++++++++.+. +...+ ++
T Consensus 250 ~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~--sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~--~t---- 321 (459)
T 4a6r_A 250 RKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTA--AKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHG--FT---- 321 (459)
T ss_dssp HHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHH--HH----
T ss_pred HHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeh--hhhhcCCCCCccceeeCHHHHHHhhcCCCcccC--CC----
Confidence 99999999999965 2211 1101111224787765 4966521246899999999887665 22211 00
Q ss_pred cCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHH-HcccCCCCCCCCCe
Q 037063 383 PSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRAR-YLINWLANAL-MNLHHPHSETGIPL 460 (588)
Q Consensus 383 ~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~-~L~~~l~~~L-~~L~h~~~~~g~~~ 460 (588)
| +.+..+ .++..++|+.++.. .+.++++ .+.+++++.| ..|. +.+.
T Consensus 322 ----------------~----~~~~~~---~aaa~aal~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~------~~~~ 369 (459)
T 4a6r_A 322 ----------------Y----SGHPVC---AAVAHANVAALRDE---GIVQRVKDDIGPYMQKRWRETFS------RFEH 369 (459)
T ss_dssp ----------------H----CSCHHH---HHHHHHHHHHHHHT---CHHHHHHHTHHHHHHHHHHHHHT------TCTT
T ss_pred ----------------C----CCCHHH---HHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHh------cCCC
Confidence 0 011111 13444667666542 3444555 5555555555 3331 1244
Q ss_pred EEEeCCCCCCCcccEEEEEeecCCCC--Cc-----CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCC
Q 037063 461 VRIYGPKVMFDRGPSLAFNVFDWNGT--RI-----DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTN 533 (588)
Q Consensus 461 v~i~~p~~~~~rg~iv~f~~~~~~g~--~i-----~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~ 533 (588)
+..+. ..|.++.+.+.+.... .+ ....+.+.|.++||.++++
T Consensus 370 ~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------------------------- 418 (459)
T 4a6r_A 370 VDDVR-----GVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRAC-------------------------- 418 (459)
T ss_dssp EEEEE-----EETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEE--------------------------
T ss_pred eEEEE-----EEEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecC--------------------------
Confidence 44332 3467777776532111 01 0345666677789998864
Q ss_pred CCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 534 ETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 534 ~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
. .+||+++++..+.||++++++.|++++++.
T Consensus 419 ---g--~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 419 ---G--DHIVSAPPLVMTRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp ---T--TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---C--CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 289999999999999999999999988653
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-17 Score=186.90 Aligned_cols=310 Identities=11% Similarity=0.018 Sum_probs=206.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
...+.++++.+|+++|++ +.+++++|++.|+..++.++ +++||+|+++...|..... .+...|+++++++.+
T Consensus 194 ~g~i~eaE~~lA~~fGa~---~a~~v~nGts~An~~ai~al-~~pGD~VLv~r~~H~S~~~----~l~lsGa~pv~v~~~ 265 (715)
T 3n75_A 194 SGPHKEAEQYIARVFNAD---RSYMVTNGTSTANKIVGMYS-APAGSTILIDRNCHKSLTH----LMMMSDVTPIYFRPT 265 (715)
T ss_dssp BTHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHHH-CCTTCEEEEESSCCHHHHH----HHHHSCCEEEEECCC
T ss_pred cHHHHHHHHHHHHHhCCC---CceEECcHHHHHHHHHHHHh-CCCCCEEEECCCccHHHHH----HHHHcCCEEEEEecc
Confidence 456789999999999995 34777777789999999998 8999998766655543443 345679999999875
Q ss_pred CCCCc----c-----CHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCC-
Q 037063 258 WPNLR----I-----HSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKD- 326 (588)
Q Consensus 258 ~~~~~----i-----~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d- 326 (588)
+.+.. + |+++|+++|.+. ...+.+++++++++ |++|..+|+++| ++|++++ +++|+|+.....
T Consensus 266 ~~~~gi~~~i~~~~~d~e~Le~~l~~~---~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f 339 (715)
T 3n75_A 266 RNAYGILGGIPQSEFQHATIAKRVKET---PNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNF 339 (715)
T ss_dssp BCTTCCBCCCCGGGGSHHHHHHHHHHS---TTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGG
T ss_pred ccccccccCcccccCCHHHHHHHHhhC---cCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEcccccccccc
Confidence 33222 3 899999999731 11112348888888 999999999999 8887653 799999765410
Q ss_pred ------CCCCCCCCCCCcEE---EeccCccCCCCCCceEEEEEeCcchh-cccCCCCCCCceEeeecCCCcccccccccc
Q 037063 327 ------MDTLGLSLFKPDFL---ICSFYKIFGENPSGFGCLFVKKSSAS-VLSGSTSSVSTIMGIEPSFSEIIELETLDE 396 (588)
Q Consensus 327 ------~~~l~l~~~~~D~v---v~S~~K~~G~~P~G~G~L~v~~~~~~-~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~ 396 (588)
...+... ..+|++ +.|+||.+|. +++.|+++++++... .+....
T Consensus 340 ~~~~~~~~al~~g-~~aD~vii~~~S~hKtL~g-ltqgs~i~v~~~i~~~~~~~~~------------------------ 393 (715)
T 3n75_A 340 SPIYEGKCGMSGG-RVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAY------------------------ 393 (715)
T ss_dssp SGGGTTSSTTSSS-CCTTCEEEEEECHHHHSSC-CTTCEEEEEESCCCHHHHHHHH------------------------
T ss_pred CCccccccccccC-cCCCEEEEEEecccccccC-CCCeeEEEeCchhhHHHHHHHH------------------------
Confidence 1122211 125765 8999997773 778899999876311 111000
Q ss_pred cccccCCCCCccchhhHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe--EEEeCCCCCC---
Q 037063 397 SSQSKFPESSISGVSSKLVECKGLDHADA-LGLILISNRARYLINWLANALMNLHHPHSETGIPL--VRIYGPKVMF--- 470 (588)
Q Consensus 397 ~~f~e~GT~~~~~~~~~~al~~aL~~l~~-~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~--v~i~~p~~~~--- 470 (588)
..+ ..+++++..+ +++..|++++.. .| +.+.+++..++++++++|.+++.- .++ ++++++....
T Consensus 394 ~~~-~STSpsy~~~---AsldaA~~~~~~~~g-~~~~~~l~~~a~~~r~~L~~i~~~-----~~~~~~~~~~~~~~~~~~ 463 (715)
T 3n75_A 394 MMH-TTTSPHYGIV---ASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLRTE-----SDGWFFDVWQPDHIDTTE 463 (715)
T ss_dssp HHT-SCSSCCHHHH---HHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-----SSSCCCEESSCSCCCSCS
T ss_pred Hhh-cCCCchHHHH---HHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHhhhh-----cccceeeccCcccccchh
Confidence 012 4556776664 788889888864 34 557888999999999999886310 001 3444432100
Q ss_pred ----------------------CcccEEEEEeec--CCCC----CcCHHHHHHHHHhCCcEeccccccCcccccchHHHH
Q 037063 471 ----------------------DRGPSLAFNVFD--WNGT----RIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQER 522 (588)
Q Consensus 471 ----------------------~rg~iv~f~~~~--~~g~----~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~ 522 (588)
....=+++.+.+ .+|. .++...+.+.|+++||.+--..
T Consensus 464 ~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d-------------- 529 (715)
T 3n75_A 464 CWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG-------------- 529 (715)
T ss_dssp CEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE--------------
T ss_pred hhccCcccccccccccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC--------------
Confidence 001123444432 2232 4778889999999999764221
Q ss_pred HHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 523 VRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 523 ~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
...|=+=+...+|.+++++|+++|.+|-+
T Consensus 530 ----------------~~~vl~l~s~g~~~~~~~~L~~aL~~~~~ 558 (715)
T 3n75_A 530 ----------------PYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (715)
T ss_dssp ----------------TTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ----------------CCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 11555556677899999999999998754
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8e-17 Score=174.33 Aligned_cols=354 Identities=12% Similarity=0.017 Sum_probs=209.0
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+.-|||..+. |.-++.+++++.+.+.......+ .. .+ ..+...+
T Consensus 49 ~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~-----------------------~~----~~--~~~~~~~ 99 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHA-----------------------YV----GH--GTEASIT 99 (460)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCC-----------------------CT----TC--CCHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcccccc-----------------------cc----cc--CCHHHHH
Confidence 56789998754 45578888887665532111000 00 00 1356678
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCC--------CCCeEE-EcCCCchhHHHHHHHHH---------H
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFY--------SNPRLL-TVYDHENEAAALMIESS---------K 245 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~--------~gd~ll-~~~e~~s~~~~~~~~~a---------~ 245 (588)
++++++++++.+.+ .|+||+|+++|+.+++..+ .+ .+++|+ ....||......+ ... .
T Consensus 100 la~~l~~~~~~~~~--~v~~~~gGseA~~~al~~~-~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~ 175 (460)
T 3gju_A 100 LAKMIIDRAPKGMS--RVYFGLSGSDANETNIKLI-WYYNNVLGRPEKKKIISRWRGYHGSGVMTG-SLTGLDLFHNAFD 175 (460)
T ss_dssp HHHHHHHHSCTTEE--EEEEESSHHHHHHHHHHHH-HHHHHHTTCTTCCEEEEETTCCCCSSHHHH-HHCCCGGGTTTTT
T ss_pred HHHHHHhhCCCCcC--EEEEeCchHHHHHHHHHHH-HHHHHhcCCCCCCEEEEECCCcCCCCHHHh-hccCCcccccccC
Confidence 99999999876654 4999999999999988876 32 346655 4556665332221 110 0
Q ss_pred hcCCEEEEEeccC----CCCccC--------HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHH
Q 037063 246 KRGARVSSAEFAW----PNLRIH--------SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVA 308 (588)
Q Consensus 246 ~~G~~v~~v~~~~----~~~~i~--------~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a 308 (588)
..+..+..++... ++..++ .++|+++|.+ ...+++++|++..+++++|.+.+ +++| ++|
T Consensus 176 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~----~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~ 251 (460)
T 3gju_A 176 LPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILA----EGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVL 251 (460)
T ss_dssp CSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHH
T ss_pred CCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHh----cCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHH
Confidence 1122455565431 111122 5788888862 11246889999999999999887 8999 999
Q ss_pred HHcCcEEEEeCCCc-CCCC--CCCCCCCCCCCcEEEeccCccCCCCC-CceEEEEEeCcchhcccCCCCCCCceEeeecC
Q 037063 309 AEKGWHVLLDATAL-GSKD--MDTLGLSLFKPDFLICSFYKIFGENP-SGFGCLFVKKSSASVLSGSTSSVSTIMGIEPS 384 (588)
Q Consensus 309 ~~~g~~vvvDaa~~-~~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P-~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~ 384 (588)
+++|+++|+|.++. ++.. ..........+|++++ .|.+|. + ..+|++++++++++.+....... .
T Consensus 252 ~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK~l~g-G~~~lg~v~~~~~i~~~~~~~~~~~-~------- 320 (460)
T 3gju_A 252 KKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITI--AKGLTS-AYAPLSGVIVADRVWQVLVQGSDKL-G------- 320 (460)
T ss_dssp HHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEE--CGGGTT-TSSCCEEEEEEHHHHHHHHHHHHHH-C-------
T ss_pred HHcCCEEEEeccccCCCcccccchHhhcCCCCCeeee--ehhhcC-CCCCeEEEEECHHHHHHHhcccccc-c-------
Confidence 99999999999966 3211 1101111223787754 597763 3 46799999999887764210000 0
Q ss_pred CCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEE
Q 037063 385 FSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALG-LILISNRARYLINWLANALMNLHHPHSETGIPLVRI 463 (588)
Q Consensus 385 ~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G-~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i 463 (588)
.+...+|.+...+ ..++..++|+.++..+ ++++.+....+.+.|.+.+.+ .+.+..
T Consensus 321 -------------~~~~~~t~~~~~~-~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---------~~~~~~ 377 (460)
T 3gju_A 321 -------------SLGHGWTYSAHPI-CVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGG---------HKNVGE 377 (460)
T ss_dssp -------------SCSCCCTTTTCHH-HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT---------STTEEE
T ss_pred -------------ccccCCCCCCCHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc---------CCCeEE
Confidence 0000111211111 1244456777665432 233444444444444444443 234433
Q ss_pred eCCCCCCCcccEEEEEeecCCCC--Cc-----CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCc
Q 037063 464 YGPKVMFDRGPSLAFNVFDWNGT--RI-----DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETR 536 (588)
Q Consensus 464 ~~p~~~~~rg~iv~f~~~~~~g~--~i-----~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~ 536 (588)
+. ..|.++.+.+.+.... .+ ....+.+.|.++||.++++.
T Consensus 378 ~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------------- 424 (460)
T 3gju_A 378 VR-----GDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP---------------------------- 424 (460)
T ss_dssp EE-----EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS----------------------------
T ss_pred Ee-----eeeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC----------------------------
Confidence 32 2467777776532111 01 13456677777899987641
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 537 SGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 537 ~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+..+||+++++..|.||++++++.|++++++
T Consensus 425 -~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 455 (460)
T 3gju_A 425 -QGDILGFAPPLCLTREQADIVVSKTADAVKS 455 (460)
T ss_dssp -SSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 0128999999999999999999999998875
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-17 Score=177.14 Aligned_cols=345 Identities=12% Similarity=0.040 Sum_probs=218.6
Q ss_pred CCe--eeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 110 NNY--VCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 110 ~~~--vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
++. -|||..+. |.-++.+.+++.+.+.... +.+ . +....+..
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~----~~~--------------------~------~~~~~~~~ 120 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN----HVM--------------------F------GGLTHEPA 120 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCS----CCC--------------------S------SSEECHHH
T ss_pred CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhcc----Ccc--------------------c------cccCCHHH
Confidence 566 89998763 5568888888866653311 100 0 00114566
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCC-------CCC-eEE-EcCCCchhHHHHHH---------HH
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFY-------SNP-RLL-TVYDHENEAAALMI---------ES 243 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~-------~gd-~ll-~~~e~~s~~~~~~~---------~~ 243 (588)
.+++++++++++.+.+ .|+||+|+++|+.+++..+ .+ +|+ +|+ ....||......+. ..
T Consensus 121 ~~L~e~la~~~~~~~~--~v~~~~sGseA~~~Alk~a-~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 197 (457)
T 3tfu_A 121 ARLAKLLVDITPAGLD--TVFFSDSGSVSVEVAAKMA-LQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 197 (457)
T ss_dssp HHHHHHHHHHSSTTEE--EEEEESSHHHHHHHHHHHH-HHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC------
T ss_pred HHHHHHHHHhCCCCcC--EEEEeCcHHHHHHHHHHHH-HHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCccccccc
Confidence 7999999999987654 4999999999999988776 32 555 555 45566653322110 00
Q ss_pred HHhcCCEEEEEeccCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeC-CCCCCCccCC----HHHH-HHHHHcCcEEE
Q 037063 244 SKKRGARVSSAEFAWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPL-QSKVTGARYS----YMWM-SVAAEKGWHVL 316 (588)
Q Consensus 244 a~~~G~~v~~v~~~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~-~sn~tG~~~p----l~~I-~~a~~~g~~vv 316 (588)
.......+..++.... ....|.++|+++|++. .+++++|++.. ++|++|.+.| +++| ++|+++|+++|
T Consensus 198 ~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~-----~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI 272 (457)
T 3tfu_A 198 WTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQH-----AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLI 272 (457)
T ss_dssp ----CCCCEEECCCCSSCCHHHHHHHHHHHHHH-----GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEE
T ss_pred ccCCCCCceEecCCCcccCHHHHHHHHHHHHhC-----CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 0111223444444211 1224778899888721 14688999999 9999999998 8889 99999999999
Q ss_pred EeCCCc-CCCC--CCCCCCCCCCCcEEEeccCccCCCCC-CceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccc
Q 037063 317 LDATAL-GSKD--MDTLGLSLFKPDFLICSFYKIFGENP-SGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELE 392 (588)
Q Consensus 317 vDaa~~-~~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P-~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~ 392 (588)
+|+++. ++.. ...++.....+|++ ++.|.+|. + .++|++++++++++.+.....+
T Consensus 273 ~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~g-G~~~lG~v~~~~~i~~~~~~~~~~------------------ 331 (457)
T 3tfu_A 273 FDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTG-GYLSLAATLCTADVAHTISAGAAG------------------ 331 (457)
T ss_dssp EECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT-TSSCCEEEEEEHHHHHHHHHSSSC------------------
T ss_pred EEcCccCCccccchhHhHhcCCCceEE--EEChhhhC-CCcceEEEEEcHHHHHHhhccCCC------------------
Confidence 999965 2210 11111112348877 66796662 3 3689999999988766311000
Q ss_pred cccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc
Q 037063 393 TLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR 472 (588)
Q Consensus 393 ~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r 472 (588)
.|...+|.+...+ ..++..++|+.+.+ +.+.++++.+.+++++.|.++. ..+.+..+. ..
T Consensus 332 -----~~~~~~t~~~n~~-a~aaa~aaL~~~~~---~~~~~~~~~~~~~l~~~L~~l~------~~~~v~~vr-----~~ 391 (457)
T 3tfu_A 332 -----ALMHGPTFMANPL-ACAVSVASVELLLG---QDWRTRITELAAGLTAGLDTAR------ALPAVTDVR-----VC 391 (457)
T ss_dssp -----SCCCCCTTTTCHH-HHHHHHHHHHHHHT---SCHHHHHHHHHHHHHHHHGGGG------GSTTEEEEE-----EC
T ss_pred -----ceeEecCCCcCHH-HHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHh------cCCCeeeee-----cC
Confidence 0001112211111 12344466666654 4567888888899999998863 123443221 24
Q ss_pred ccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCH
Q 037063 473 GPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNF 552 (588)
Q Consensus 473 g~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~ 552 (588)
|.++.+.+.+. .+...+.+.|.++||.+++. . ..||+++.+..|.
T Consensus 392 G~~~~i~l~~~----~~~~~~~~~l~~~Gv~v~~~-----------------------------~--~~lRi~p~~~~t~ 436 (457)
T 3tfu_A 392 GAIGVIECDRP----VDLAVATPAALDRGVWLRPF-----------------------------R--NLVYAMPPYICTP 436 (457)
T ss_dssp SSCEEEEESSC----CCHHHHHHHHHHTTEECCCB-----------------------------T--TEEEECCCTTCCH
T ss_pred CeEEEEEECCc----ccHHHHHHHHHHCCeEEEec-----------------------------C--CEEEEECCCCCCH
Confidence 67888877642 34667777777789998752 1 1899999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 037063 553 EDTYRLWAFVSRFLDA 568 (588)
Q Consensus 553 eDv~~li~~l~~~l~~ 568 (588)
|||+++++.|++++++
T Consensus 437 eei~~~l~~L~~~l~~ 452 (457)
T 3tfu_A 437 AEITQITSAMVEVARL 452 (457)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998865
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-17 Score=175.70 Aligned_cols=175 Identities=13% Similarity=0.042 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHhCCCCCCceEEE--ecCHHHHHHHHHHhCCCCCCCeEEEcC--CCchhHHHHH-------HHHHHhcCC
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVF--TANQSSAFKLLAESYPFYSNPRLLTVY--DHENEAAALM-------IESSKKRGA 249 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvf--t~g~T~al~lv~~s~~~~~gd~ll~~~--e~~s~~~~~~-------~~~a~~~G~ 249 (588)
.+++++++|+++|++ ..+++ ++|+|+|+.+++.++ +++||+|++.. .|.. ....+ ...++..|+
T Consensus 75 ~~~Le~~lA~l~g~e---~alv~p~~~sGt~Ai~~al~al-l~pGD~Vl~~~~~~y~~-~~~~~g~~~~~~~~~l~~~G~ 149 (427)
T 3i16_A 75 RDSLDAVYARVFNTE---SALVRPHFVNGTHALGAALFGN-LRPGNTMLSVCGEPYDT-LHDVIGITENSNMGSLKEFGI 149 (427)
T ss_dssp HHHHHHHHHHHHTCS---EEEEETTCCSHHHHHHHHHHHH-CCTTCEEEESSSSCCGG-GHHHHTCSCCCSSCCTGGGTC
T ss_pred HHHHHHHHHHHhCCc---ceEEeCCCccHHHHHHHHHHHH-hCCCCEEEEeCCCccHH-HHHHHhccccchHHHHHHcCC
Confidence 678889999999995 34666 889999999999998 89999987654 4443 33221 034466799
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeC----CCCCCCccCCHHHH-HHHHH--cCcEEEEeCCCc
Q 037063 250 RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPL----QSKVTGARYSYMWM-SVAAE--KGWHVLLDATAL 322 (588)
Q Consensus 250 ~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~----~sn~tG~~~pl~~I-~~a~~--~g~~vvvDaa~~ 322 (588)
+++.++.+ +++.+|.++|++++++ .+++++|++.+ ++|++|.+.|+++| ++|++ +|+++++|+++.
T Consensus 150 ~~~~v~~~-~~g~~D~e~l~~~l~~------~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~ 222 (427)
T 3i16_A 150 NYKQVDLK-EDGKPNLEEIEKVLKE------DESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYG 222 (427)
T ss_dssp EEEECCCC-TTSSCCHHHHHHHHHT------CTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTT
T ss_pred EEEEecCc-cCCCcCHHHHHHHhhC------CCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 99999987 6788999999999971 14799999999 99999999999999 99999 999999999987
Q ss_pred CCC-CCCCCCCCCCCCcEEEeccCccCCCCC-CceEEEEEeCcchhcccC
Q 037063 323 GSK-DMDTLGLSLFKPDFLICSFYKIFGENP-SGFGCLFVKKSSASVLSG 370 (588)
Q Consensus 323 ~~~-d~~~l~l~~~~~D~vv~S~~K~~G~~P-~G~G~L~v~~~~~~~l~~ 370 (588)
.+. ...++. .++|+++.|+||.+|.+. ...|+++.+++++++++.
T Consensus 223 ~~~~~~~p~~---~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~ 269 (427)
T 3i16_A 223 EFMDTKEPTD---VGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSY 269 (427)
T ss_dssp TTSSSSCGGG---GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHH
T ss_pred cccccCCccc---cCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHH
Confidence 763 223322 348999999999888210 335999999998887754
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-16 Score=168.36 Aligned_cols=349 Identities=11% Similarity=0.030 Sum_probs=205.3
Q ss_pred CCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|||..+ .|.-++.+.+++.+.+.......+ . + ...+...+
T Consensus 42 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~------------------------~-----~-~~~~~~~~ 91 (448)
T 3dod_A 42 NGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTL------------------------L-----G-MTNVPATQ 91 (448)
T ss_dssp TSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCC------------------------S-----S-SEEHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccc------------------------c-----c-cCCHHHHH
Confidence 5678999876 345578889888766533111000 0 0 01456678
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCC----CC----CeEE-EcCCCchhHHHHHHHHHHh--------
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFY----SN----PRLL-TVYDHENEAAALMIESSKK-------- 246 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~----~g----d~ll-~~~e~~s~~~~~~~~~a~~-------- 246 (588)
++++++++++...+ .|+||+|+|+|+.+++..+ .+ +| ++|+ ....||......+ .....
T Consensus 92 la~~l~~~~~~~~~--~v~~~~sGseA~~~al~~~-~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~ 167 (448)
T 3dod_A 92 LAETLIDISPKKLT--RVFYSDSGAEAMEIALKMA-FQYWKNIGKPEKQKFIAMKNGYHGDTIGAV-SVGSIELFHHVYG 167 (448)
T ss_dssp HHHHHHHHSCTTEE--EEEEESSHHHHHHHHHHHH-HHHHHHTTCTTCCEEEEEC-------------------------
T ss_pred HHHHHHHhCCCCCC--EEEEeCchHHHHHHHHHHH-HHHHHhhCCCCCCEEEEECCCCCCccHHHH-HhcCCcccccccc
Confidence 99999999976544 4999999999999988776 33 44 7765 4455554222111 11000
Q ss_pred -cCCEEEEEeccCCCCc-----------cCHHHHHHHHhhhccccCCCcceEEEEeCCC-CCCCccCC----HHHH-HHH
Q 037063 247 -RGARVSSAEFAWPNLR-----------IHSGKLMKKIVGKRKKKKKKKRGLFVFPLQS-KVTGARYS----YMWM-SVA 308 (588)
Q Consensus 247 -~G~~v~~v~~~~~~~~-----------i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~s-n~tG~~~p----l~~I-~~a 308 (588)
....+..++.. ...+ .|.++|+++|.. ..+++++|++..++ +++|.+.| +++| ++|
T Consensus 168 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~ 241 (448)
T 3dod_A 168 PLMFESYKAPIP-YVYRSESGDPDECRDQCLRELAQLLEE-----HHEEIAALSIESMVQGASGMIVMPEGYLAGVRELC 241 (448)
T ss_dssp -----CEEECCC-CCTTSSSCCHHHHHHHHHHHHHHHHHH-----HGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHH
T ss_pred CCCCCceEeCCC-ccccCCccchhhhhHHHHHHHHHHHHh-----CCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHH
Confidence 01223444442 1111 247889888862 01467888888887 99998887 8999 999
Q ss_pred HHcCcEEEEeCCCc-CCCC--CCCCCCCCCCCcEEEeccCccCCCCC-CceEEEEEeCcchhcccCCCCCCCceEeeecC
Q 037063 309 AEKGWHVLLDATAL-GSKD--MDTLGLSLFKPDFLICSFYKIFGENP-SGFGCLFVKKSSASVLSGSTSSVSTIMGIEPS 384 (588)
Q Consensus 309 ~~~g~~vvvDaa~~-~~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P-~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~ 384 (588)
+++|+++|+|.++. ++.. ..........+|+++ +.|.+|. + ..+|++++++++++.+....... +
T Consensus 242 ~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t--~sK~l~~-G~~~ig~v~~~~~~~~~~~~~~~~~-~------- 310 (448)
T 3dod_A 242 TTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMA--AGKGITG-GYLPIAVTFATEDIYKAFYDDYENL-K------- 310 (448)
T ss_dssp HHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGT-TSSCCEEEEEEHHHHHTTCSCGGGC-C-------
T ss_pred HHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEE--ecccccC-CcCceEEEEECHHHHHHhhhccccC-C-------
Confidence 99999999999865 2211 101111123378765 4597773 4 36799999999888776521000 0
Q ss_pred CCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEe
Q 037063 385 FSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIY 464 (588)
Q Consensus 385 ~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~ 464 (588)
.+...+|.+...+ ..++..++|+.++. +.+.++++++.+++++.|.++. +.+.+...
T Consensus 311 -------------~~~~~~t~~~~~~-~~aaa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~l~------~~~~~~~~ 367 (448)
T 3dod_A 311 -------------TFFHGHSYTGNQL-GCAVALENLALFES---ENIVEQVAEKSKKLHFLLQDLH------ALPHVGDI 367 (448)
T ss_dssp -------------CCCCCCTTTTCHH-HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHT------TSTTEEEE
T ss_pred -------------cccccCCCCcCHH-HHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHh------cCCCeEEE
Confidence 0001122222222 12444567776654 3455566666666666665531 12333322
Q ss_pred CCCCCCCcccEEEEEeecCCCCC--cC-----HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcC
Q 037063 465 GPKVMFDRGPSLAFNVFDWNGTR--ID-----PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRS 537 (588)
Q Consensus 465 ~p~~~~~rg~iv~f~~~~~~g~~--i~-----~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~ 537 (588)
. ..|.++.+.+.+..... .. ...+.+.|.++||.++++ .
T Consensus 368 ~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-----------------------------~ 413 (448)
T 3dod_A 368 R-----QLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL-----------------------------G 413 (448)
T ss_dssp E-----EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE-----------------------------T
T ss_pred E-----eeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEecc-----------------------------C
Confidence 1 24667777775421110 00 245666677789998764 1
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 538 GVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 538 g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
..||+++++..|.|||+++++.|++++++
T Consensus 414 --~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 442 (448)
T 3dod_A 414 --DVIAFLPPLASTAEELSEMVAIMKQAIHE 442 (448)
T ss_dssp --TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred --CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 28999999999999999999999998865
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-17 Score=174.38 Aligned_cols=290 Identities=12% Similarity=0.052 Sum_probs=184.2
Q ss_pred HHHHHHHHHHh-CCC-----CCCceE--EEecCHHHHHHHH---HHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCE
Q 037063 182 SKIRKRIMDFM-NIS-----EDDYTL--VFTANQSSAFKLL---AESYPFYSNPRLLTVYDHENEAAALMIESSKKRGAR 250 (588)
Q Consensus 182 ~~~r~~ia~~l-ga~-----~~e~~v--vft~g~T~al~lv---~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~ 250 (588)
.++|+.|++++ +.. +++ | +.|.++++++.++ +.++ .++||+|++....+... ...++..|++
T Consensus 82 ~~lr~~ia~~~~~~~~~~~~~~~--i~~~~~~~g~ga~~~~~~~~~~~-~~~gd~Vlv~~p~y~~~----~~~~~~~g~~ 154 (409)
T 4eu1_A 82 ASFVEEAQKLCFGPTCAALRDGR--IASCQTLGGTGALRIGGDLLNRF-VANCNRIYGPDVGYPNH----ESIFAKAGME 154 (409)
T ss_dssp HHHHHHHHHHHHCSSCHHHHTTC--EEEEEESHHHHHHHHHHHHGGGT-SSSCCEEEEESSCCTHH----HHHHHHTTCE
T ss_pred HHHHHHHHHHHcCCCchhhccCc--eeeeecccchHHHHHHHHHHHHh-cCCCCEEEEeCCCcHhH----HHHHHHcCCe
Confidence 47888888876 664 444 6 4599999999875 4455 67899977655444322 3455678999
Q ss_pred EEEEecc-CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC-C
Q 037063 251 VSSAEFA-WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG-S 324 (588)
Q Consensus 251 v~~v~~~-~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~-~ 324 (588)
++.++++ ..++.+|+++|++.+++ ..+++++++++.++||||..+|.++ | ++|+++|+++|+|.+... .
T Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~ 229 (409)
T 4eu1_A 155 LTPYSYYDPATKGLNLAGMLECLDK-----APEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFA 229 (409)
T ss_dssp EEEECCEETTTTEECHHHHHHHHHH-----SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTT
T ss_pred EEEEEeecCcCCcCcHHHHHHHHHh-----CCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccc
Confidence 9999983 24567999999999962 1145788888999999999999776 6 889999999999998432 2
Q ss_pred CCC-----CCC-CC-CCCCCcEEEeccCccCCCCCCceEEE--EEeC-c----chhcccCCCCCCCceEeeecCCCcccc
Q 037063 325 KDM-----DTL-GL-SLFKPDFLICSFYKIFGENPSGFGCL--FVKK-S----SASVLSGSTSSVSTIMGIEPSFSEIIE 390 (588)
Q Consensus 325 ~d~-----~~l-~l-~~~~~D~vv~S~~K~~G~~P~G~G~L--~v~~-~----~~~~l~~~~~g~~g~v~~~~~~~~~~~ 390 (588)
..- ..+ .+ ......+++.|++|.||.+..++|++ ++.+ + +++.+...... +
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~--~------------- 294 (409)
T 4eu1_A 230 TGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRP--M------------- 294 (409)
T ss_dssp TSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHH--H-------------
T ss_pred cCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhh--h-------------
Confidence 100 000 00 11123477889999998423347887 5544 4 33333221100 0
Q ss_pred cccccccccccCCCCCccchhhHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe-EEEe
Q 037063 391 LETLDESSQSKFPESSISGVSSKLVECKGLDHAD-----ALGLILISNRARYLINWLANALMNLHHPHSETGIPL-VRIY 464 (588)
Q Consensus 391 ~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~-----~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~-v~i~ 464 (588)
..+++.+.+ .++..+|+... ...++++.++.++.++++.+.|.++ |.+. ++++
T Consensus 295 ----------~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~ 353 (409)
T 4eu1_A 295 ----------YNNPPLYGA----WVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKAC-------GSVHDWSHI 353 (409)
T ss_dssp ----------HSSCCHHHH----HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCSCCHHH
T ss_pred ----------cCCCChHHH----HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCCccee
Confidence 001111111 23334444210 1125677888888999999999885 2221 3333
Q ss_pred CCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEE
Q 037063 465 GPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTA 544 (588)
Q Consensus 465 ~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRv 544 (588)
.| .++++.| .+ ++.+.+.++++++||.+.+| .|+
T Consensus 354 ~~-----~~~~~~~--~~-----~~~~~~~~ll~~~gv~v~p~----------------------------------~Ri 387 (409)
T 4eu1_A 354 ER-----QVGMMAY--TG-----LTREQVELLRSEYHIYMTLN----------------------------------GRA 387 (409)
T ss_dssp HH-----SCSSEEE--CC-----CCHHHHHHHHHHHCEECCTT----------------------------------CEE
T ss_pred cC-----CceEEEE--eC-----CCHHHHHHHHHcCCEEEcCC----------------------------------CEE
Confidence 22 3455444 22 34666778888889987643 478
Q ss_pred ecCCCCCHHHHHHHHHHHHHhh
Q 037063 545 ALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 545 Slg~~~t~eDv~~li~~l~~~l 566 (588)
|++..+ .+||+++++.|++++
T Consensus 388 ~~~~~~-~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 388 AVSGLN-STNVEYVSQAIHNVT 408 (409)
T ss_dssp EGGGCC-TTTHHHHHHHHHHHH
T ss_pred EEEecC-HhhHHHHHHHHHHHh
Confidence 887654 467999999998865
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-16 Score=170.96 Aligned_cols=348 Identities=9% Similarity=0.017 Sum_probs=216.2
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+.-|||..+. |.-++.+++++.+.+.......+ .. . ...+...+
T Consensus 53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-----------------------~~-~-----~~~~~~~~ 103 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNT-----------------------FF-K-----TTHVPAIA 103 (472)
T ss_dssp TCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCS-----------------------SS-S-----EECHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcccccc-----------------------cc-c-----cCCHHHHH
Confidence 67789998763 55678899988766643111000 00 0 01456678
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCC--------CCCeEE-EcCCCchhHHHHHHHHH------Hh--
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFY--------SNPRLL-TVYDHENEAAALMIESS------KK-- 246 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~--------~gd~ll-~~~e~~s~~~~~~~~~a------~~-- 246 (588)
+.++++++++.+.+ .|+|++|+++|+..++..+ .+ .+++|+ ....||......+ ... +.
T Consensus 104 lae~l~~~~~~~~~--~v~~~~sGseA~~~aik~a-~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~-~~~~~~~~~~~~~ 179 (472)
T 3hmu_A 104 LAQKLAELAPGDLN--HVFFAGGGSEANDTNIRMV-RTYWQNKGQPEKTVIISRKNAYHGSTVASS-ALGGMAGMHAQSG 179 (472)
T ss_dssp HHHHHHHHSCTTEE--EEEEESSHHHHHHHHHHHH-HHHHHHTTCTTCCEEEEETTCCCCSSHHHH-HHSCCHHHHHTTC
T ss_pred HHHHHHHhCCCCCC--EEEEeCCHHHHHHHHHHHH-HHHHHhcCCCCCCEEEEEcCcCCCccHHhh-hccCChhhccccC
Confidence 99999999876544 4999999999999888876 32 345555 5556665332221 110 00
Q ss_pred cCCEEEEEeccC----CCCccC--------HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHH
Q 037063 247 RGARVSSAEFAW----PNLRIH--------SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAA 309 (588)
Q Consensus 247 ~G~~v~~v~~~~----~~~~i~--------~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~ 309 (588)
....+..++... .+. .+ .++|+++|++ ...+++.+|++..+++.+|.+.| +++| ++|+
T Consensus 180 ~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~----~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~ 254 (472)
T 3hmu_A 180 LIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILE----LGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICD 254 (472)
T ss_dssp CCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHH
T ss_pred CCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHh----cCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHH
Confidence 111345555421 111 23 6788888862 11246889999999999999998 9999 9999
Q ss_pred HcCcEEEEeCCCc-CCCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCC
Q 037063 310 EKGWHVLLDATAL-GSKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFS 386 (588)
Q Consensus 310 ~~g~~vvvDaa~~-~~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~ 386 (588)
++|+++|+|.++. ++.. ..........+|++++| |.+|.+-..+|++++++++++.+.+....
T Consensus 255 ~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~s--K~l~gg~~plG~v~~~~~i~~~~~~~~~~------------ 320 (472)
T 3hmu_A 255 KYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIA--KGLSSGYAPIGGSIVCDEVAHVIGKDEFN------------ 320 (472)
T ss_dssp HTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTTTSSCCEEEEEEHHHHHHHTTSCBC------------
T ss_pred HcCCEEEEEccccCCcccCccchhHHhCCCCceeeec--hhhhcCCcceEEEEECHHHHHhcccCCcc------------
Confidence 9999999999976 3211 11000112348988654 97663113579999999988877321100
Q ss_pred cccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHHHcccCCCCCCCCCeEEEeC
Q 037063 387 EIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRAR-YLINWLANALMNLHHPHSETGIPLVRIYG 465 (588)
Q Consensus 387 ~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~-~L~~~l~~~L~~L~h~~~~~g~~~v~i~~ 465 (588)
..+|.+...+ ..++..++|+.+++ +.+.++++ .+.+++++.|.+|.. .+.+..+.
T Consensus 321 --------------~~~t~~~np~-a~aAa~aaL~~~~~---~~~~~~~~~~~~~~l~~~L~~l~~------~~~v~~vr 376 (472)
T 3hmu_A 321 --------------HGYTYSGHPV-AAAVALENLRILEE---ENILDHVRNVAAPYLKEKWEALTD------HPLVGEAK 376 (472)
T ss_dssp --------------CCCTTTTCHH-HHHHHHHHHHHHHH---TTHHHHHHHTHHHHHHHHHHGGGG------STTEEEEE
T ss_pred --------------ccCCCCCCHH-HHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHhc------CCCeEEEE
Confidence 1112221211 12444566776654 45667777 778888888877621 23343332
Q ss_pred CCCCCCcccEEEEEeecCCC--CCc------CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcC
Q 037063 466 PKVMFDRGPSLAFNVFDWNG--TRI------DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRS 537 (588)
Q Consensus 466 p~~~~~rg~iv~f~~~~~~g--~~i------~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~ 537 (588)
..|.++.+.+..... ..+ ....+.+.|.++||.++++ .
T Consensus 377 -----~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-----------------------------g 422 (472)
T 3hmu_A 377 -----IVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHV-----------------------------G 422 (472)
T ss_dssp -----EETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEE-----------------------------T
T ss_pred -----ecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEec-----------------------------C
Confidence 346787887753210 111 0345666677789988764 1
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 538 GVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 538 g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
.+||+++.+..|.|||+++++.|++++++.
T Consensus 423 --~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 423 --DRMIISPPLVITPAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp --TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 289999999999999999999999998763
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-16 Score=170.66 Aligned_cols=352 Identities=10% Similarity=0.017 Sum_probs=216.6
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+.-|||..+. |.-++.+++++.+.+.....+.+ . . ...+...+
T Consensus 52 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-----------------------~--~-----~~~~~~~~ 101 (476)
T 3i5t_A 52 DGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASP-----------------------W--Y-----MATSPAAR 101 (476)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCT-----------------------T--T-----CBCHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccc-----------------------C--c-----cCCHHHHH
Confidence 57789998654 55688999988766643111110 0 0 01456778
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCC-------C-CCeEE-EcCCCchhHHHHHHHHHH---------
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFY-------S-NPRLL-TVYDHENEAAALMIESSK--------- 245 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~-------~-gd~ll-~~~e~~s~~~~~~~~~a~--------- 245 (588)
+.++++++++.+.+ .|+|++|+++|+..++..+ .+ + +++|+ ....||......+ ....
T Consensus 102 la~~l~~~~~~~~~--~v~~~~sGseA~~~Aik~a-~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~-~~~~~~~~~~~~~ 177 (476)
T 3i5t_A 102 LAEKIATLTPGDLN--RIFFTTGGSTAVDSALRFS-EFYNNVLGRPQKKRIIVRYDGYHGSTALTA-ACTGRTGNWPNFD 177 (476)
T ss_dssp HHHHHHTTSSTTCC--EEEEESSHHHHHHHHHHHH-HHHHHHTTCTTCCEEEEETTCCCCSSHHHH-HTCCCGGGCTTSC
T ss_pred HHHHHHhcCCCCcC--EEEEeCchHHHHHHHHHHH-HHHHHhcCCCCCCEEEEEcCCcCcCChhhc-cccCChhhccccC
Confidence 99999999876554 4999999999999888776 22 3 34555 5556665332221 1100
Q ss_pred hcCCEEEEEeccC--CCCccC--------HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHH
Q 037063 246 KRGARVSSAEFAW--PNLRIH--------SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAE 310 (588)
Q Consensus 246 ~~G~~v~~v~~~~--~~~~i~--------~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~ 310 (588)
.....+..++... .....+ .++|+++|.+ ...+++++|++..+++++|.+.+ +++| ++|++
T Consensus 178 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~----~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~ 253 (476)
T 3i5t_A 178 IAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIES----LGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEK 253 (476)
T ss_dssp CCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred CCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHh----cCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHH
Confidence 0011234444321 000111 6788888862 11246789999999999998777 8999 99999
Q ss_pred cCcEEEEeCCCc-CCCC--CCCCC-CCCCCCcEEEeccCccCCCCC-CceEEEEEeCcchhcccCCCCCCCceEeeecCC
Q 037063 311 KGWHVLLDATAL-GSKD--MDTLG-LSLFKPDFLICSFYKIFGENP-SGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSF 385 (588)
Q Consensus 311 ~g~~vvvDaa~~-~~~d--~~~l~-l~~~~~D~vv~S~~K~~G~~P-~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~ 385 (588)
+|+++|+|.++. ++.. .-... .....+|++++| |.+|. + ..+|++++++++++.+.+..... +
T Consensus 254 ~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~~-G~~plg~v~~~~~i~~~~~~~~~~~-~-------- 321 (476)
T 3i5t_A 254 HDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFA--KGVTS-GYVPLGGLAISEAVLARISGENAKG-S-------- 321 (476)
T ss_dssp TTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEEC--GGGGT-TSSCCEEEEECHHHHHTTSGGGCTT-C--------
T ss_pred cCCEEEEEecccCCccccCceeeecccCCCcchhhhh--hhhcC-CCcCeEEEEECHHHHHHHhcCCccc-c--------
Confidence 999999999976 3211 10011 112348987654 97763 3 46799999998887765421000 0
Q ss_pred CcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeC
Q 037063 386 SEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYG 465 (588)
Q Consensus 386 ~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~ 465 (588)
.|...+|.+...+ ..++..++|+.+++ +.+.++++.+.+++++.|..|. ..+.+..+.
T Consensus 322 ------------~~~~~~t~~~np~-a~aAa~aaL~~~~~---~~~~~~~~~~~~~l~~~L~~l~------~~~~v~~v~ 379 (476)
T 3i5t_A 322 ------------WFTNGYTYSNQPV-ACAAALANIELMER---EGIVDQAREMADYFAAALASLR------DLPGVAETR 379 (476)
T ss_dssp ------------EECCCCTTTTCHH-HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHTTT------TSTTEEEEE
T ss_pred ------------cccccCCCCcCHH-HHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHh------cCCCeEEEE
Confidence 0001122222222 12444566776654 4577888888888988888763 124444332
Q ss_pred CCCCCCcccEEEEEeecCCCC--Cc-----CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCC
Q 037063 466 PKVMFDRGPSLAFNVFDWNGT--RI-----DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSG 538 (588)
Q Consensus 466 p~~~~~rg~iv~f~~~~~~g~--~i-----~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g 538 (588)
..|.++.+.+.+.... .+ ....+.+.|.++||.+++. .
T Consensus 380 -----~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-----------------------------g- 424 (476)
T 3i5t_A 380 -----SVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL-----------------------------G- 424 (476)
T ss_dssp -----EETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE-----------------------------T-
T ss_pred -----ecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEec-----------------------------C-
Confidence 3467777777542111 11 1334666666789988752 1
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 539 VSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 539 ~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
..||+++.+..+.+||+++++.|++++++.
T Consensus 425 -~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~ 454 (476)
T 3i5t_A 425 -DLCVISPPLIISRAQIDEMVAIMRQAITEV 454 (476)
T ss_dssp -TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 289999999999999999999999988753
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-16 Score=168.76 Aligned_cols=174 Identities=10% Similarity=0.079 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHhCCCCCCceEEE--ecCHHHHHHHHHHhCCCCCCCeEEEcC--CCchhHHHHH-------HHHHHhcCC
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVF--TANQSSAFKLLAESYPFYSNPRLLTVY--DHENEAAALM-------IESSKKRGA 249 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvf--t~g~T~al~lv~~s~~~~~gd~ll~~~--e~~s~~~~~~-------~~~a~~~G~ 249 (588)
.+++++++++++|++ +.+++ ++|+|+|+.+++.++ +++||+|++.. .|+. ....+ ...++..|+
T Consensus 76 ~~~Le~~lA~l~g~e---~alv~p~~~sGt~A~~~al~al-l~pGD~Vl~~~~~~y~~-~~~~~g~~~~~~~~~l~~~G~ 150 (427)
T 3hvy_A 76 RDSLDRVYANIFNTE---SAFVRPHFVNGTHAIGAALFGN-LRPNDTMMSICGMPYDT-LHDIIGMDDSKKVGSLREYGV 150 (427)
T ss_dssp HHHHHHHHHHHHTCS---EEEEETTCCSHHHHHHHHHHHT-CCTTCEEEECSSSCCGG-GHHHHTCCTTCCSCCTGGGTC
T ss_pred HHHHHHHHHHHhCCC---ceEEeCCCCcHHHHHHHHHHHh-cCCCCEEEEeCCCCchh-HHHHhccccchhhhHHHHcCC
Confidence 678999999999985 33665 889999999999999 99999987654 4443 22221 033456799
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeC----CCCCCCccCCHHHH-HHHHH--cCcEEEEeCCCc
Q 037063 250 RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPL----QSKVTGARYSYMWM-SVAAE--KGWHVLLDATAL 322 (588)
Q Consensus 250 ~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~----~sn~tG~~~pl~~I-~~a~~--~g~~vvvDaa~~ 322 (588)
+++.++. +++.+|+++|++++++ .++|++|++.+ ++|+||.+.|+++| ++|++ +|+++++|+++.
T Consensus 151 ~~~~v~~--~~~~~d~e~l~~~i~~------~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~ 222 (427)
T 3hvy_A 151 KYKMVDL--KDGKVDINTVKEELKK------DDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYG 222 (427)
T ss_dssp EEEECCC--BTTBCCHHHHHHHHHH------CTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTC
T ss_pred EEEEecC--CCCCcCHHHHHHHhhC------CCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCcc
Confidence 9999988 4678999999999972 14799999999 99999999999999 99999 899999999977
Q ss_pred CCC-CCCCCCCCCCCCcEEEeccCccCCCCC-CceEEEEEeCcchhcccC
Q 037063 323 GSK-DMDTLGLSLFKPDFLICSFYKIFGENP-SGFGCLFVKKSSASVLSG 370 (588)
Q Consensus 323 ~~~-d~~~l~l~~~~~D~vv~S~~K~~G~~P-~G~G~L~v~~~~~~~l~~ 370 (588)
.+. ...++. .++|+++.|+||.+|.+. ...|+++.++++++++..
T Consensus 223 ~~~~~~~p~~---~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~ 269 (427)
T 3hvy_A 223 EFVEEKEPTD---VGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATF 269 (427)
T ss_dssp TTTSSSCGGG---GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHH
T ss_pred ccccCCCCcc---cCCeEEEECCcccccccccceEEEEEECHHHHHHHHH
Confidence 663 233332 348999999999887210 234999999988887754
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=170.63 Aligned_cols=330 Identities=13% Similarity=0.047 Sum_probs=202.8
Q ss_pred CCeeeecCCCCC------CCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGHG------LFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~g------l~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|||+.+.. ..++.+++++.+.+.... . ++. ..+...+
T Consensus 53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~-----------------------------~~~-~~~~~~~ 99 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGV---L-----------------------------YGT-PTALEVK 99 (434)
T ss_dssp TCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCS---C-----------------------------CSS-CCHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCc---C-----------------------------CCC-CCHHHHH
Confidence 577899987653 357888888866653210 0 000 1345568
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCC--CCCeEE-EcCCCchhHHHHHHHHHHhcCC-----------
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFY--SNPRLL-TVYDHENEAAALMIESSKKRGA----------- 249 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~--~gd~ll-~~~e~~s~~~~~~~~~a~~~G~----------- 249 (588)
++++++++++ +++ .|+||+|+|+|+.+++..+ .. ++++|+ ....||......+ ...|.
T Consensus 100 l~~~la~~~~-~~~--~v~~~~sGsea~~~ai~~a-~~~~~~~~vi~~~~~yhg~~~~~~----~~~g~~~~~~~~~~~~ 171 (434)
T 3l44_A 100 FAKMLKEAMP-ALD--KVRFVNSGTEAVMTTIRVA-RAYTGRTKIMKFAGCYHGHSDLVL----VAAGSGPSTLGTPDSA 171 (434)
T ss_dssp HHHHHHHHCT-TCS--EEEEESSHHHHHHHHHHHH-HHHHCCCEEEEETTCCCCSSGGGG----BC-------CCCBSST
T ss_pred HHHHHHHhCC-CCC--EEEEeCchHHHHHHHHHHH-HHhhCCCEEEEEcCccCCCcHHHH----hhcCCcccccCCCCcC
Confidence 8899999987 444 4999999999999988765 22 566765 4555554221110 01111
Q ss_pred --------EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEE
Q 037063 250 --------RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVL 316 (588)
Q Consensus 250 --------~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vv 316 (588)
.+..+|.+ |.++|+++|.+. .+++++|++..+++.+|.+.| +++| ++|+++|+++|
T Consensus 172 ~~~~~~~~~~~~~~~~------d~~~le~~l~~~-----~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI 240 (434)
T 3l44_A 172 GVPQSIAQEVITVPFN------NVETLKEALDKW-----GHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVI 240 (434)
T ss_dssp TCCHHHHTTEEEECTT------CHHHHHHHHHHH-----GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEE
T ss_pred CCCCcCCCceEecCcc------cHHHHHHHHHhC-----CCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 22233221 788999988721 146789999999999999998 9999 99999999999
Q ss_pred EeCCCcC---CCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccc
Q 037063 317 LDATALG---SKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIEL 391 (588)
Q Consensus 317 vDaa~~~---~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~ 391 (588)
+|+++.. +.. ...++ ..+|++ ++.|.+|. +.++|++++++++++.+.+....
T Consensus 241 ~DEv~~g~~~g~~~~~~~~~---~~~di~--t~sK~~~~-G~~iG~~~~~~~i~~~~~~~~~~----------------- 297 (434)
T 3l44_A 241 YDEVITAFRFMYGGAQDLLG---VTPDLT--ALGKVIGG-GLPIGAYGGKKEIMEQVAPLGPA----------------- 297 (434)
T ss_dssp EECTTTTTTSSSSCHHHHHT---CCCSEE--EEEGGGGT-TSSCEEEEECHHHHTTBTTTSSB-----------------
T ss_pred EeccccceeccccHHHHHcC---CCCCee--ehhhhhcC-CcCeeeEEEcHHHHHhhccCCCc-----------------
Confidence 9999762 100 01112 237865 45697773 67899999999888776542100
Q ss_pred ccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCC
Q 037063 392 ETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFD 471 (588)
Q Consensus 392 ~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~ 471 (588)
+ ..+|.+...+ ..++..++|+.+.+ +.+.++++++.+++++.|.++... .+.+... ..
T Consensus 298 -------~-~~~t~~~~~~-a~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~-----~~~~~~~-----~~ 355 (434)
T 3l44_A 298 -------Y-QAGTMAGNPA-SMASGIACLEVLQQ---EGLYEKLDELGATLEKGILEQAAK-----HNIDITL-----NR 355 (434)
T ss_dssp -------C-CCCTTTTCHH-HHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHH-----TTCCEEE-----EE
T ss_pred -------c-cCCCCCcCHH-HHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHh-----CCCCEEE-----Ee
Confidence 0 1112222221 12344456665543 455666667777777776653100 1111111 13
Q ss_pred cccEEEEEeecCCC---------CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEE
Q 037063 472 RGPSLAFNVFDWNG---------TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVV 542 (588)
Q Consensus 472 rg~iv~f~~~~~~g---------~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~v 542 (588)
.+.++.+.+.+... .......+.+.|.++||.++.+.. ..+
T Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------------------------------~~~ 405 (434)
T 3l44_A 356 LKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKY------------------------------EAW 405 (434)
T ss_dssp ETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTT------------------------------CCE
T ss_pred eccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCC------------------------------CcE
Confidence 46788887743110 001124566677778999886521 168
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 543 TAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 543 RvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
|++ +..|.||++++++.|++++++
T Consensus 406 rl~--~~~t~e~i~~~l~~l~~~l~~ 429 (434)
T 3l44_A 406 FLT--TEHTKEDIEYTIEAVGRAFAA 429 (434)
T ss_dssp ECC--TTCCHHHHHHHHHHHHHHHHH
T ss_pred EEe--cccCHHHHHHHHHHHHHHHHH
Confidence 886 567999999999999998865
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-17 Score=173.82 Aligned_cols=335 Identities=12% Similarity=0.070 Sum_probs=201.2
Q ss_pred CCeeeecCCCCC------CCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGHG------LFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~g------l~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+.-|||..+.. ..++.+++++.+.+.... + | +. ..+...+
T Consensus 50 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~-------------~---------------~~-~~~~~~~ 96 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT----S-------------F---------------GA-PCALENV 96 (427)
T ss_dssp TSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCS----C-------------C---------------SS-CCHHHHH
T ss_pred CCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCC----C-------------c---------------CC-CCHHHHH
Confidence 567899987653 348888888866653210 0 0 00 1456678
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEE-EcCCCchhHHHHH-------HHH--HHhcC----
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLL-TVYDHENEAAALM-------IES--SKKRG---- 248 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll-~~~e~~s~~~~~~-------~~~--a~~~G---- 248 (588)
++++++++++ +++ .|+||+|+|+|+.+++.... +..+++|+ ....||......+ ... ....|
T Consensus 97 la~~l~~~~~-~~~--~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (427)
T 3fq8_A 97 LAEMVNDAVP-SIE--MVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKK 173 (427)
T ss_dssp HHHHHHHHST-TCS--EEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHH
T ss_pred HHHHHHHhCC-CCC--EEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCc
Confidence 9999999997 444 49999999999998884321 12345654 4555554111000 000 00001
Q ss_pred --CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCC
Q 037063 249 --ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATA 321 (588)
Q Consensus 249 --~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~ 321 (588)
..+..++.+ |+++|++++++ ..+++++|++..+++.+|.+.| +++| ++|+++|+++|+|+++
T Consensus 174 ~~~~~~~~~~~------d~~~le~~l~~-----~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~ 242 (427)
T 3fq8_A 174 TTANTLTTPYN------DLEAVKALFAE-----NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVI 242 (427)
T ss_dssp HHTTEEEEETT------CHHHHHHHHHH-----STTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCceeecCCC------CHHHHHHHHHh-----CCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 123444432 78999999972 1137899999999999999999 9999 9999999999999997
Q ss_pred cC---CC--CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccc
Q 037063 322 LG---SK--DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDE 396 (588)
Q Consensus 322 ~~---~~--d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~ 396 (588)
.. +. .....+ ..+|++++ .|.+|. ...+|++++++++++.+.+....
T Consensus 243 ~g~~~g~~~~~~~~~---~~~di~t~--sK~~~~-G~~~G~~~~~~~~~~~~~~~~~~---------------------- 294 (427)
T 3fq8_A 243 TGFRIAYGGVQEKFG---VTPDLTTL--GKIIGG-GLPVGAYGGKREIMQLVAPAGPM---------------------- 294 (427)
T ss_dssp TBTTTBTTHHHHHTT---CCCSEEEE--CGGGGT-TSSCEEEEECHHHHTTBTTTSSB----------------------
T ss_pred cccccCcchhhHhcC---CCCChhhh--hhhhhC-CcceEEEEEcHHHHHhhccCCCc----------------------
Confidence 61 10 011122 23787654 598873 34599999999888777643100
Q ss_pred cccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE
Q 037063 397 SSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL 476 (588)
Q Consensus 397 ~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv 476 (588)
+ ..+|.+...+ ..++..++|+.+.+ +.+.++++++.+++++.|.++.... +.+. .+ ...+.++
T Consensus 295 --~-~~~t~~~~~~-~~aa~~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~-~~------~~~g~~~ 357 (427)
T 3fq8_A 295 --Y-QAGTLSGNPL-AMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGLLAIAQET---GHAA-CG------GQVSGMF 357 (427)
T ss_dssp --C-CCCTTTTCHH-HHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHT---TCCC-EE------EEETTEE
T ss_pred --c-ccCCCCcCHH-HHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhC---CCCe-EE------EEeeeEE
Confidence 0 1122221221 12444456665543 4456667777777777766531000 0111 11 1245677
Q ss_pred EEEeecCCCC---------CcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecC
Q 037063 477 AFNVFDWNGT---------RIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALG 547 (588)
Q Consensus 477 ~f~~~~~~g~---------~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg 547 (588)
.|.+.+.... ......+.+.|.++||.++.+.. .|+++.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~--------------------------------~r~~~~ 405 (427)
T 3fq8_A 358 GFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF--------------------------------EAGFTS 405 (427)
T ss_dssp EEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT--------------------------------SCEECC
T ss_pred EEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCC--------------------------------CCEEee
Confidence 7776542100 00124566677778999876521 144556
Q ss_pred CCCCHHHHHHHHHHHHHhhhh
Q 037063 548 CLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 548 ~~~t~eDv~~li~~l~~~l~~ 568 (588)
+..|.||++++++.|++++++
T Consensus 406 ~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 406 LAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHh
Confidence 788999999999999998764
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-16 Score=169.07 Aligned_cols=342 Identities=15% Similarity=0.124 Sum_probs=201.2
Q ss_pred CCCCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCC-chhHH
Q 037063 108 SLNNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGS-EESEL 180 (588)
Q Consensus 108 ~~~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~-~~~~~ 180 (588)
|..+..|||..+ .|.-++.+++++.+.+......+. + .++. ...++
T Consensus 59 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~--------------------------~~~~~~~~~l 111 (472)
T 1ohv_A 59 DVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINR-P--------------------------ALGILPPENF 111 (472)
T ss_dssp BTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCC-C--------------------------CTTTSCBTTH
T ss_pred eCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccc-c--------------------------ccccccHHHH
Confidence 336788999855 355688899988665421101111 0 0010 01345
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC------------C------------CCC---CeEE-EcCCC
Q 037063 181 ESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP------------F------------YSN---PRLL-TVYDH 232 (588)
Q Consensus 181 ~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~------------~------------~~g---d~ll-~~~e~ 232 (588)
.+++.++++++++...+ .|+|++|+++|+..++.... + ++| ++|+ ....|
T Consensus 112 ~~~la~~l~~~~~~~~~--~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~y 189 (472)
T 1ohv_A 112 VEKLRESLLSVAPKGMS--QLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAF 189 (472)
T ss_dssp HHHHHHTGGGGCCTTCC--EEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCC
T ss_pred HHHHHHHHHHhCCCCcC--EEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCc
Confidence 55666666666654444 49999999999998887651 0 145 6655 55567
Q ss_pred chhHHHHHHHHH-----HhcCCEE---EEEeccC---C-C---------CccCHHHHHHHHhhhccccCCCcceEEEEeC
Q 037063 233 ENEAAALMIESS-----KKRGARV---SSAEFAW---P-N---------LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPL 291 (588)
Q Consensus 233 ~s~~~~~~~~~a-----~~~G~~v---~~v~~~~---~-~---------~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~ 291 (588)
|......+ .+. +..|..+ ..+++.. + . ...|+++|+++|+.. .....++++|++..
T Consensus 190 Hg~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~~~~~~vive~ 266 (472)
T 1ohv_A 190 HGRTMGCL-ATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKY--RKKKKTVAGIIVEP 266 (472)
T ss_dssp CCSSHHHH-HHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHH--HHTTCCEEEEEECS
T ss_pred ccccHHHH-hcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhc--CCCCCCEEEEEEcC
Confidence 76443332 111 1122221 1223310 0 0 012578888888720 00012789999998
Q ss_pred CCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCc-CCC-----CCCCCCCCCCCCcEEEeccCcc-CCCCCCceEEEE
Q 037063 292 QSKVTGARYS----YMWM-SVAAEKGWHVLLDATAL-GSK-----DMDTLGLSLFKPDFLICSFYKI-FGENPSGFGCLF 359 (588)
Q Consensus 292 ~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~-~~~-----d~~~l~l~~~~~D~vv~S~~K~-~G~~P~G~G~L~ 359 (588)
++|++|.+.| +++| ++|+++|+++|+|+++. ++. ....+++. ..+|+++ +.|. +| | |+++
T Consensus 267 v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~-~~~Di~t--~sK~~l~----G-G~~~ 338 (472)
T 1ohv_A 267 IQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLD-DPADVMT--FSKKMMT----G-GFFH 338 (472)
T ss_dssp SBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCS-SCCSEEE--ECGGGSS----E-EEEE
T ss_pred CcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCC-CCCCEEE--Ecccccc----C-CccC
Confidence 9999999988 9999 99999999999999987 331 11122211 1278875 4596 45 3 6554
Q ss_pred EeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 037063 360 VKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLI 439 (588)
Q Consensus 360 v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~ 439 (588)
++++ ..+.+.. ..+|.+...+ ..++..++|+.+.+ +.+.++++.+.
T Consensus 339 -~~~~-~~~~~~~----------------------------~~~T~~~~~~-~~aaa~aal~~~~~---~~~~~~~~~~~ 384 (472)
T 1ohv_A 339 -KEEF-RPNAPYR----------------------------IFNTWLGDPS-KNLLLAEVINIIKR---EDLLSNAAHAG 384 (472)
T ss_dssp -CGGG-SCSSSSS----------------------------SCCSSSSCHH-HHHHHHHHHHHHHH---TTHHHHHHHHH
T ss_pred -chhh-ccccccc----------------------------ccCccCccHH-HHHHHHHHHHHHHh---CCHHHHHHHHH
Confidence 4443 1111111 1223211111 12455577887765 34678888888
Q ss_pred HHHHHHHHcc--cCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccc
Q 037063 440 NWLANALMNL--HHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGE 517 (588)
Q Consensus 440 ~~l~~~L~~L--~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~ 517 (588)
++|+++|.++ +++. .+.... ..+.++.|.+.+. .....+.+.|.++||.+..+
T Consensus 385 ~~l~~~L~~l~~~~~~------~v~~~~-----~~g~~~~~~~~~~----~~~~~~~~~l~~~Gv~~~~~---------- 439 (472)
T 1ohv_A 385 KVLLTGLLDLQARYPQ------FISRVR-----GRGTFCSFDTPDE----SIRNKLISIARNKGVMLGGC---------- 439 (472)
T ss_dssp HHHHHHHHHHHHHCTT------TCEEEE-----EETTEEEEECSSH----HHHHHHHHHHHHTTEECEEE----------
T ss_pred HHHHHHHHHHHhhCCC------cEEeec-----CCceEEEEEeCCh----hHHHHHHHHHHHCCeEEecC----------
Confidence 9998888875 2221 121111 2467877766431 12445666666789988753
Q ss_pred hHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 518 YEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 518 ~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
|..+||+++++.+|.+||+++++.|++++++
T Consensus 440 --------------------g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 440 --------------------GDKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp --------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred --------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1128999999999999999999999988754
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.8e-17 Score=173.88 Aligned_cols=176 Identities=11% Similarity=0.016 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcC--CCchhHHHHHH------HHHHhcCCE
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVY--DHENEAAALMI------ESSKKRGAR 250 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~--e~~s~~~~~~~------~~a~~~G~~ 250 (588)
...+++++.+++++|++.....++|+ |+|+|+.+++.++ +++||+|++.. .|.+ ....+. ..++..|++
T Consensus 65 ~~~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al-~~~Gd~Vl~~~~~~y~~-~~~~~~l~g~~~~~~~~~G~~ 141 (431)
T 3ht4_A 65 IGRDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGI-LRPGDELLYITGKPYDT-LEEIVGVRGKGVGSFKEYNIG 141 (431)
T ss_dssp HHHHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTT-CCTTCEEEECSSSCCTT-HHHHTTSSSCSSSCSGGGTCE
T ss_pred hhHHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHh-CCCCCEEEEeCCCCchh-HHHHHhhcccccchHHHcCCE
Confidence 34779999999999996432122355 7799999999999 89999987664 4443 332221 234567999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeC----CCCCCCccCCHHHH-HHHHH--cCcEEEEeCCCcC
Q 037063 251 VSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPL----QSKVTGARYSYMWM-SVAAE--KGWHVLLDATALG 323 (588)
Q Consensus 251 v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~----~sn~tG~~~pl~~I-~~a~~--~g~~vvvDaa~~~ 323 (588)
++.++.+ +++.+|+++|+++|+ +++++|++.+ +++++|.+.++++| ++|++ +|+++++|+++..
T Consensus 142 ~~~v~~~-~~~~~d~e~l~~~l~--------~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~ 212 (431)
T 3ht4_A 142 YNAVPLT-EGGLVDFEAVAAAIH--------SNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGE 212 (431)
T ss_dssp EEECCBC-TTSSBCHHHHHHHCC--------TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCT
T ss_pred EEEeCCC-CCCCcCHHHHHhhcC--------CCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChh
Confidence 9999998 568899999999998 7899999996 55555556667777 89999 9999999999776
Q ss_pred CC-CCCCCCCCCCCCcEEEeccCccCC--CCCCceEEEEEeCcchhcccC
Q 037063 324 SK-DMDTLGLSLFKPDFLICSFYKIFG--ENPSGFGCLFVKKSSASVLSG 370 (588)
Q Consensus 324 ~~-d~~~l~l~~~~~D~vv~S~~K~~G--~~P~G~G~L~v~~~~~~~l~~ 370 (588)
+. ...++. ..+|+++.|++|.+| ++|.| |+++.++++++.+..
T Consensus 213 ~~~~~~~~~---~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~ 258 (431)
T 3ht4_A 213 FIEEQEPCH---VGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAY 258 (431)
T ss_dssp TSSSCCGGG---TTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHH
T ss_pred hccCCCccc---cCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHH
Confidence 52 122222 248999999999754 22667 999999988877654
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-16 Score=166.17 Aligned_cols=337 Identities=10% Similarity=0.034 Sum_probs=206.4
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|+|.++. |..++.+++++.+.+... +. . +. ..+...+
T Consensus 54 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~---~~-~----------------------------~~-~~~~~~~ 100 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGHKHPRVLEAVEEALARG---WL-Y----------------------------GA-PGEAEVL 100 (434)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC---SC-C----------------------------SS-CCHHHHH
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhC---CC-C----------------------------CC-CCHHHHH
Confidence 56779998654 446788888886665321 10 0 00 1456678
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeE-EEcCCCchhHHHHHH----HHH-----HhcCC---
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRL-LTVYDHENEAAALMI----ESS-----KKRGA--- 249 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~l-l~~~e~~s~~~~~~~----~~a-----~~~G~--- 249 (588)
++++++++++ .++ .|+||+|+|+|+.+++.... +..+++| +....||......+. ... ...|+
T Consensus 101 l~~~la~~~~-~~~--~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~ 177 (434)
T 2epj_A 101 LAEKILGYVK-RGG--MIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEA 177 (434)
T ss_dssp HHHHHHHHHC-TTC--EEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHH
T ss_pred HHHHHHHhCC-CCC--EEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCc
Confidence 9999999995 333 49999999999999887611 2345664 455566642111100 000 01232
Q ss_pred ---EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCC
Q 037063 250 ---RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATA 321 (588)
Q Consensus 250 ---~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~ 321 (588)
.+..++. .|+++|+++|++. .+++++|++..+++++|.+.| +++| ++|+++|+++|+|+++
T Consensus 178 ~~~~~~~~~~------~d~~~le~~l~~~-----~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~ 246 (434)
T 2epj_A 178 VARLTLVTPY------NDVEALERVFAEY-----GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVV 246 (434)
T ss_dssp HHTTEEEEET------TCHHHHHHHHHHH-----GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred ccCceEecCC------CCHHHHHHHHHhC-----CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcch
Confidence 3455543 2789999998721 136788999888888999998 9999 9999999999999998
Q ss_pred cCCCCCCCC---CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccc
Q 037063 322 LGSKDMDTL---GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESS 398 (588)
Q Consensus 322 ~~~~d~~~l---~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~ 398 (588)
. +...... +.....+|++ |++|.+|. +..+|++++++++++.+.+....
T Consensus 247 ~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~G~v~~~~~~~~~l~~~~~~------------------------ 298 (434)
T 2epj_A 247 T-GFRLGLEGAQGYFNIEGDII--VLGKIIGG-GFPVGAVAGSREVMSLLTPQGKV------------------------ 298 (434)
T ss_dssp T-TTTSSTTHHHHHHTCCCSEE--EEEGGGGT-TSSCEEEEECHHHHTTBTTTSSB------------------------
T ss_pred h-ceeCCcchhhHHhCCCCCee--eecchhcC-CcceeeeeecHHHHHhhccCCCc------------------------
Confidence 7 2111111 0001237875 66798874 34589999999887766542100
Q ss_pred cccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEE
Q 037063 399 QSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAF 478 (588)
Q Consensus 399 f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f 478 (588)
+ ..+|.+...+ ..++..++|+.+++ +.+.++++.+.+++++.|.++.... +.. ..+. ..|.++.+
T Consensus 299 ~-~~~t~~~~~~-~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~---~~~-~~~~------~~g~~~~i 363 (434)
T 2epj_A 299 F-NAGTFNAHPI-TMAAGLATLKALEE---EPVYSVSREAAKALEEAASEVLDRT---GLP-YTIN------RVESMMQL 363 (434)
T ss_dssp C-CCCTTTTCHH-HHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHH---TCC-EEEE------EETTEEEE
T ss_pred c-cCCCCCcCHH-HHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHhhC---CCc-EEEE------EeeeEEEE
Confidence 0 1122221111 12455567777665 3466777888888888887641000 111 1111 24677777
Q ss_pred EeecCC--C-------CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC
Q 037063 479 NVFDWN--G-------TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL 549 (588)
Q Consensus 479 ~~~~~~--g-------~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~ 549 (588)
.+.+.. + .......+.+.|.++||.++.|. . ..+|++ +.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------------------------~--~~~~~~--~~ 411 (434)
T 2epj_A 364 FIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSN----------------------------L--EAVFTG--LP 411 (434)
T ss_dssp EETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSST----------------------------T--SCEECC--TT
T ss_pred EEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccC----------------------------C--CcEEEe--cc
Confidence 775310 0 00123456666778899987651 1 145555 67
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q 037063 550 TNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 550 ~t~eDv~~li~~l~~~l~~ 568 (588)
.+.+|++++++.|++++++
T Consensus 412 ~t~e~i~~~l~~l~~~l~~ 430 (434)
T 2epj_A 412 HQGEALEIAVEGLRSSLKT 430 (434)
T ss_dssp CSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 8999999999999998765
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=170.88 Aligned_cols=333 Identities=13% Similarity=0.093 Sum_probs=199.6
Q ss_pred CCeeeecCCCCC------CCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGHG------LFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~g------l~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|||+.+.. ..++.+++++.+.+.... . ++. ..+...+
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~---~-----------------------------~~~-~~~~~~~ 97 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGL---S-----------------------------FGA-PTEMEVK 97 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCS---C-----------------------------CSS-CCHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCc---c-----------------------------cCC-CCHHHHH
Confidence 578899997653 247888888876653210 0 000 1355678
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEE-EcCCCchhHHHHHHHHHHhcCC------------
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLL-TVYDHENEAAALMIESSKKRGA------------ 249 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~------------ 249 (588)
++++++++++ .++ .|+||+|+|+|+.+++.... +..+++|+ ....||...... ... ...|.
T Consensus 98 la~~l~~~~~-~~~--~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~-~~~-~~~~~~~~~~~~~~~~~ 172 (429)
T 4e77_A 98 MAQLVTDLVP-TMD--MVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCL-LVK-AGSGALTLGQPNSPGVP 172 (429)
T ss_dssp HHHHHHHHST-TCS--EEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC--------------------CCCTTSC
T ss_pred HHHHHHhhCC-CCC--EEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhh-hhh-cCCcccccCCCCcCCCC
Confidence 8999999987 344 49999999999999887431 12345554 566666532211 100 00111
Q ss_pred -----EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeC
Q 037063 250 -----RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDA 319 (588)
Q Consensus 250 -----~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDa 319 (588)
.+..++. .|.++|+++|++ ..+++++|++..+++.+|.+.| +++| ++|+++|+++|+|+
T Consensus 173 ~~~~~~~~~~~~------~d~~~le~~l~~-----~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DE 241 (429)
T 4e77_A 173 TDFAKHTLTCTY------NDLASVRQAFEQ-----YPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDE 241 (429)
T ss_dssp GGGGTTEEEECT------TCHHHHHHHHHH-----STTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CccCCceeecCC------CCHHHHHHHHHh-----cCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 1222222 178999999872 1146788888888888999999 9999 99999999999999
Q ss_pred CCc---CCC--CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 320 TAL---GSK--DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 320 a~~---~~~--d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
++. .+. ....++ ..+|++ ++.|.+|. +.++|+++.++++++.+.+....
T Consensus 242 v~~g~r~g~~~~~~~~~---~~pdi~--t~sK~~~~-G~~~G~~~~~~~~~~~l~~~~~~-------------------- 295 (429)
T 4e77_A 242 VMTGFRVALAGAQDYYH---VIPDLT--CLGKIIGG-GMPVGAFGGRREVMNALAPTGPV-------------------- 295 (429)
T ss_dssp TTTBTTTBTTCHHHHTT---CCCSEE--EEEGGGGT-TSCCEEEEECHHHHTTBTTTSSB--------------------
T ss_pred cccCcccCcchHHHhcC---CCCCee--eecccccC-CCCeEEEEECHHHHHHhccCCCc--------------------
Confidence 987 221 011222 237875 66698873 56789999999888776542110
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
+ ..+|.+...+ ..++..++|+.++. +.+.++++++.+++++.|.++.... +... .+ ...|.
T Consensus 296 ----~-~~~t~~~~~~-~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~---~~~~-~~------~~~g~ 356 (429)
T 4e77_A 296 ----Y-QAGTLSGNPI-AMAAGFACLTEISQ---VGVYETLTELTDSLATGLRHAAKEE---NIPL-VV------NHVGG 356 (429)
T ss_dssp ----C-C--CCCCCHH-HHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHT---TCCC-EE------EEETT
T ss_pred ----c-ccCCCCCCHH-HHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhC---CCce-EE------EEeee
Confidence 0 1112111111 12444566666533 4566667777777777766531000 1111 11 12467
Q ss_pred EEEEEeecCCC-CC---------cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEE
Q 037063 475 SLAFNVFDWNG-TR---------IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTA 544 (588)
Q Consensus 475 iv~f~~~~~~g-~~---------i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRv 544 (588)
++.+.+.+... .. .....+.+.|.++||.++.+.. ..+|+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~------------------------------~~~~~ 406 (429)
T 4e77_A 357 MFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAF------------------------------EAGFM 406 (429)
T ss_dssp EEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTT------------------------------SCEEC
T ss_pred EEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCC------------------------------CCEEE
Confidence 77777754210 00 0124566667778999876511 14555
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 545 ALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 545 Slg~~~t~eDv~~li~~l~~~l~~ 568 (588)
....|.||++++++.|++++++
T Consensus 407 --~~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 407 --SLAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp --CTTCCHHHHHHHHHHHHHHHTT
T ss_pred --eccCCHHHHHHHHHHHHHHHHh
Confidence 4778999999999999998764
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-16 Score=168.20 Aligned_cols=332 Identities=11% Similarity=0.011 Sum_probs=202.5
Q ss_pred CCeeeecCCCCC------CCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGHG------LFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~g------l~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+.-|||+.+.. ..++.+++++.+.+.... . ++. ..+...+
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~---~-----------------------------~~~-~~~~~~~ 97 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGT---S-----------------------------FGA-PTEIENK 97 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCS---C-----------------------------CSS-CCHHHHH
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCc---C-----------------------------cCC-CCHHHHH
Confidence 577899998753 358889998866653210 0 000 0345568
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCC-CCCCeEE-EcCCCchhHHHHHHHHHHhcCC------------
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPF-YSNPRLL-TVYDHENEAAALMIESSKKRGA------------ 249 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~-~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~------------ 249 (588)
++++++++++ .++ .|+||+|+|+|+.+++..+.. .++++|+ ....||...... ....|.
T Consensus 98 l~~~la~~~~-~~~--~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~----~~~~g~~~~~~~~~~~~~ 170 (429)
T 3k28_A 98 LAKLVIERVP-SIE--IVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSL----LIKAGSGVATLGLPDSPG 170 (429)
T ss_dssp HHHHHHHHST-TCS--EEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGG----CSSCCTTC-----CCCTT
T ss_pred HHHHHHHhCC-CCC--EEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHH----HHhcCCcccccCCCCcCC
Confidence 8999999986 344 499999999999998876511 2455655 455555322111 011121
Q ss_pred -------EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEE
Q 037063 250 -------RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLL 317 (588)
Q Consensus 250 -------~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvv 317 (588)
.+..++.+ |.++|++++.+. .+++++|++..+++.+|.+.| +++| ++|+++|+++|+
T Consensus 171 ~~~~~~~~~~~~~~~------d~~~le~~l~~~-----~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 239 (429)
T 3k28_A 171 VPEGVAKNTITVAYN------DLESVKYAFEQF-----GDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIF 239 (429)
T ss_dssp CCHHHHTTEEEEETT------CHHHHHHHHHHH-----GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCcccCceeecCCC------CHHHHHHHHHhC-----CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 23333321 788999988721 146788999989999999999 9999 999999999999
Q ss_pred eCCCcCCCCCCCC---CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 318 DATALGSKDMDTL---GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 318 Daa~~~~~d~~~l---~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
|+++.. ...... ......+|+++ +.|.+|. +.++|++++++++++.+.+....
T Consensus 240 DEv~~g-~~~g~~~~~~~~~~~~di~t--~sK~~~~-G~~iG~~~~~~~~~~~~~~~~~~-------------------- 295 (429)
T 3k28_A 240 DEVMTG-FRVAYNCGQGYYGVTPDLTC--LGKVIGG-GLPVGAYGGKAEIMRQVAPSGPI-------------------- 295 (429)
T ss_dssp ECTTTT-TTSSTTHHHHHHTCCCSEEE--ECGGGGT-TSCCEEEEECHHHHTTBTTTSSB--------------------
T ss_pred eccccc-cccCcchHHHHhCCCCceeh--hhhhhcC-CCCeEEEEEcHHHHhhhccCCCc--------------------
Confidence 999752 100110 00012377764 5697774 56799999999888766542100
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
+ ..+|.+...+ +..+++..++.+. +++.++++++.+++++.|.++... .+.+... ...|.
T Consensus 296 ----~-~~~t~~~~~~----a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~-----~~~~~~~-----~~~g~ 355 (429)
T 3k28_A 296 ----Y-QAGTLSGNPL----AMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEK-----HGIPHHI-----NRAGS 355 (429)
T ss_dssp ----C-CCCTTTTCHH----HHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHH-----TTCCCEE-----EEETT
T ss_pred ----c-ccCCCCCChH----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh-----CCCCEEE-----Eeecc
Confidence 0 1112222221 2223333343333 667778888888888888764100 0111111 12456
Q ss_pred EEEEEeecCCCC---------CcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe
Q 037063 475 SLAFNVFDWNGT---------RIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA 545 (588)
Q Consensus 475 iv~f~~~~~~g~---------~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS 545 (588)
++.+.+.+.... ......+.+.|.++||.++.+. . ..+|++
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------------------------~--~~~r~~ 405 (429)
T 3k28_A 356 MIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQ----------------------------F--EGLFLS 405 (429)
T ss_dssp EEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST----------------------------T--SCBCCC
T ss_pred EEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCC----------------------------C--CCEEEE
Confidence 777766432100 0112456666778899987641 1 167876
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhh
Q 037063 546 LGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 546 lg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+..|.||++++++.|++++++
T Consensus 406 --~~~t~e~i~~~l~~l~~~l~~ 426 (429)
T 3k28_A 406 --TVHSDADIEATIAAAEIAMSK 426 (429)
T ss_dssp --TTCCHHHHHHHHHHHHHHHHT
T ss_pred --CCCCHHHHHHHHHHHHHHHHH
Confidence 577999999999999998764
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.9e-16 Score=166.00 Aligned_cols=334 Identities=13% Similarity=0.016 Sum_probs=196.8
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|+|.++. |..++.+++++.+.+... .. ++. ..+..++
T Consensus 55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~---~~-----------------------------~~~-~~~~~~~ 101 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHG---VQ-----------------------------YAA-SHPLEVR 101 (453)
T ss_dssp TCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTT---CS-----------------------------SCS-SCHHHHH
T ss_pred CCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhC---CC-----------------------------CCC-CCHHHHH
Confidence 45679998544 446788888886665320 00 000 1466778
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHh---CCCCCCCeE-EEcCCCchhHHHHHHHHH-------HhcCCE--
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAES---YPFYSNPRL-LTVYDHENEAAALMIESS-------KKRGAR-- 250 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s---~~~~~gd~l-l~~~e~~s~~~~~~~~~a-------~~~G~~-- 250 (588)
+.+++++.++ +++ .|+||+|+++|+.+++.. + .+ +++| +....||...... .... ...|+.
T Consensus 102 la~~l~~~~~-~~~--~v~~~~gg~eA~~~al~~ar~~-~~-~~~vi~~~~~yhg~~~~~-~~~~~~~~~~~~~~g~~~~ 175 (453)
T 2cy8_A 102 WAERIVAAFP-SIR--KLRFTGSGTETTLLALRVARAF-TG-RRMILRFEGHYHGWHDFS-ASGYNSHFDGQPAPGVLPE 175 (453)
T ss_dssp HHHHHHHHCT-TCS--EEEEESCHHHHHHHHHHHHHHH-HC-CCEEEEECC-----------------------------
T ss_pred HHHHHHhhCC-CCC--EEEEeCCHHHHHHHHHHHHHHh-hC-CCEEEEEcCCcCCCchhh-HhhcCCccCCCcCCCCCcc
Confidence 8888888886 444 499999999999998887 5 33 4564 4555566422111 1101 012332
Q ss_pred ----EEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCC
Q 037063 251 ----VSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATA 321 (588)
Q Consensus 251 ----v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~ 321 (588)
+..++. .|+++|+++|++. .+++++|++..+++++|.+.| +++| ++|+++|+++|+|+++
T Consensus 176 ~~~~~~~~~~------~d~~~le~~l~~~-----~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~ 244 (453)
T 2cy8_A 176 TTANTLLIRP------DDIEGMREVFANH-----GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVI 244 (453)
T ss_dssp CGGGEEEECT------TCHHHHHHHHHHH-----GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCceeecCC------CCHHHHHHHHHhc-----CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCc
Confidence 333332 3789999998720 136788888888788999988 9999 9999999999999998
Q ss_pred cCCCCCCCC---CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccc
Q 037063 322 LGSKDMDTL---GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESS 398 (588)
Q Consensus 322 ~~~~d~~~l---~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~ 398 (588)
. +...... +.....+|++ |+.|.+|. +.++|++++++++++.+.+...+. .
T Consensus 245 ~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~G~v~~~~~~~~~l~~~~~~~--~-------------------- 298 (453)
T 2cy8_A 245 S-GFRVGNHGMQALLDVQPDLT--CLAKASAG-GLPGGILGGREDVMGVLSRGSDRK--V-------------------- 298 (453)
T ss_dssp T-TTTTCTTHHHHHHTCCCSEE--EEEGGGGT-TSSCEEEEECHHHHTTSSSCC--------------------------
T ss_pred c-ccccCchhhhHHhCCCCcEE--EEChhhhC-CcceEEEechHHHHHHhccccCCC--c--------------------
Confidence 6 3111111 0001237865 67798874 456999999998877665411010 0
Q ss_pred cccCCCCCccchhhHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE
Q 037063 399 QSKFPESSISGVSSKLVECKGLDH-ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA 477 (588)
Q Consensus 399 f~e~GT~~~~~~~~~~al~~aL~~-l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~ 477 (588)
+ ..+|.+...+ ..++..++|+. + .+.+.++++.+.+++++.|.++... .+.+..+. ..|.++.
T Consensus 299 ~-~~~t~~~n~~-~~aa~~aal~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~-----~~~~~~~~-----~~g~~~~ 362 (453)
T 2cy8_A 299 L-HQGTFTGNPI-TAAAAIAAIDTIL----EDDVCAKINDLGQFAREAMNHLFAR-----KGLNWLAY-----GRFSGFH 362 (453)
T ss_dssp ------CCCCHH-HHHHHHHHHHHHH----HTTHHHHHHHHHHHHHHHHHHHHHH-----TTCCEEEE-----CCTTEEE
T ss_pred e-eCCCCCCCHH-HHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHHhh-----CCCcEEEE-----EeeeEEE
Confidence 0 1112121111 12444456665 4 2556788888888888888765100 11111111 3467777
Q ss_pred EEeec-----C------CC----CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEE
Q 037063 478 FNVFD-----W------NG----TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVV 542 (588)
Q Consensus 478 f~~~~-----~------~g----~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~v 542 (588)
+.+.+ . .. .......+.+.|.++||.++.+ + .+
T Consensus 363 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~------------------------------~--~~ 410 (453)
T 2cy8_A 363 LMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGR------------------------------G--SV 410 (453)
T ss_dssp EEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTT------------------------------T--EE
T ss_pred EEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEeCC------------------------------C--CE
Confidence 77753 1 00 0011345666666789988421 1 46
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 543 TAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 543 RvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
|++ +..+.+|++++++.|++++++.
T Consensus 411 ~l~--~~~t~~~i~~~l~~l~~~l~~~ 435 (453)
T 2cy8_A 411 FLS--AQHEREHVEHLVTTFDRVLDRL 435 (453)
T ss_dssp ECC--TTCCHHHHHHHHHHHHHHHHHH
T ss_pred Eee--ccCCHHHHHHHHHHHHHHHHHH
Confidence 654 7789999999999999988654
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-16 Score=173.63 Aligned_cols=158 Identities=13% Similarity=0.090 Sum_probs=112.5
Q ss_pred ceEEEecCHHHHHHHHHHh-----CCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCC-CCccCHHHHHHHH
Q 037063 199 YTLVFTANQSSAFKLLAES-----YPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWP-NLRIHSGKLMKKI 272 (588)
Q Consensus 199 ~~vvft~g~T~al~lv~~s-----~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~-~~~i~~e~l~~~i 272 (588)
.+|++|+|+++|+.+++.+ + +++||+|++....+.... .... ....|++++.++.+.. +..+|.++|++.+
T Consensus 166 ~~I~~t~G~~eal~~~~~~l~~~~l-~~~Gd~Vlv~~P~y~~~~-~~~~-~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~ 242 (546)
T 2zy4_A 166 VNLFAVEGGTAAMAYIFESLKLNGL-LKAGDKVAIGMPVFTPYI-EIPE-LAQYALEEVAINADPSLNWQYPDSELDKLK 242 (546)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHTTS-SCTTCEEEEEESCCHHHH-HHHH-STTSCCEEEEEECBGGGTTBCCHHHHGGGG
T ss_pred ceEEEECCHHHHHHHHHHHhhhhhc-CCCCCEEEEeCCCCccHH-HHHH-HcCCCcEEEEEecCcccCCCCCHHHHHHhh
Confidence 4699999999999999887 5 789999765544333122 1111 2345799999998632 2458999988776
Q ss_pred hhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHH--HHcCcEEEEeCCCcCCC-CCCCC-CCCCCCCcEEEecc
Q 037063 273 VGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVA--AEKGWHVLLDATALGSK-DMDTL-GLSLFKPDFLICSF 344 (588)
Q Consensus 273 ~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a--~~~g~~vvvDaa~~~~~-d~~~l-~l~~~~~D~vv~S~ 344 (588)
+ +++++|++++++||||..+|.++ | ++| +++|++||+|.+..... +...+ .+. ...++++.|+
T Consensus 243 ~--------~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~-~~~~i~~~S~ 313 (546)
T 2zy4_A 243 D--------PAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAIC-PENTLLVYSF 313 (546)
T ss_dssp S--------TTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHC-GGGEEEEEES
T ss_pred C--------CCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhC-CCCEEEEEeC
Confidence 5 68999999999999999999776 4 667 77899999999965321 11111 110 1257899999
Q ss_pred CccCCCCCCceEEEEEeCc-chhcc
Q 037063 345 YKIFGENPSGFGCLFVKKS-SASVL 368 (588)
Q Consensus 345 ~K~~G~~P~G~G~L~v~~~-~~~~l 368 (588)
+|.+|.+..++|+++++++ +++.+
T Consensus 314 SK~~g~~GlRiG~~~~~~~~l~~~l 338 (546)
T 2zy4_A 314 SKYFGATGWRLGVVAAHQQNVFDLA 338 (546)
T ss_dssp TTTTTCGGGCEEEEEEESSCHHHHH
T ss_pred ccccCCCCcceEEEEECCHHHHHHH
Confidence 9999842234899999986 66554
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.8e-16 Score=165.89 Aligned_cols=347 Identities=10% Similarity=0.009 Sum_probs=205.5
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|||+.+. |.-++.+++++.+.+..... . + .. .+ ..+...+
T Consensus 62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~--~--~--------------------~~----~~--~~~~~~~ 111 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTH--T--C--------------------FM----VT--PYEQYVQ 111 (453)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSC--C--T--------------------TT----TS--CCHHHHH
T ss_pred CCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccc--c--c--------------------cC----cC--CCHHHHH
Confidence 56789998864 44588889888766533110 0 0 00 00 1455678
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCC-CeEE-EcCCCchhHHHHHHHHHH-----h-----cCCEE
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSN-PRLL-TVYDHENEAAALMIESSK-----K-----RGARV 251 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~g-d~ll-~~~e~~s~~~~~~~~~a~-----~-----~G~~v 251 (588)
++++++++++.+. ...|+||+|+|+|+.+++......+| ++|+ ....||...... ..+.. + ....+
T Consensus 112 la~~l~~~~~~~~-~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~ 189 (453)
T 4ffc_A 112 VAELLNALTPGDH-DKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLT-MALTAKSMPYKSQFGPFAPEV 189 (453)
T ss_dssp HHHHHHHHSSCSS-CEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHH-HHHCCCCTTTTTTSCSCCSSE
T ss_pred HHHHHHHhCCCCC-CcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHH-HhhcCCCcccccCCCCCCCCc
Confidence 9999999998642 13599999999999998866421134 5555 566666533222 11100 0 01145
Q ss_pred EEEeccCC--C-CccC--------HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEE
Q 037063 252 SSAEFAWP--N-LRIH--------SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHV 315 (588)
Q Consensus 252 ~~v~~~~~--~-~~i~--------~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~v 315 (588)
..+++..+ + ..++ .+.|++.+. ..++.+|++..+++..|.+.| +++| ++|+++|+++
T Consensus 190 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~-------~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~ll 262 (453)
T 4ffc_A 190 YRMPASYPLRDEPGLTGEEAARRAISRIETQIG-------AQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVF 262 (453)
T ss_dssp EEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTC-------GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEE
T ss_pred EEeCCCccccCccccchHHHHHHHHHHHHHhcC-------CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 66665311 1 0112 233443332 145677888877777888888 8889 9999999999
Q ss_pred EEeCCCc-CCCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccc
Q 037063 316 LLDATAL-GSKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELE 392 (588)
Q Consensus 316 vvDaa~~-~~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~ 392 (588)
|+|.++. ++.. ....+.....+|+++ +.|.+|. +.++|++++++++++.+.+...++
T Consensus 263 I~DEv~~g~g~~g~~~a~~~~~~~pdi~t--~sK~~~~-G~~~G~~~~~~~i~~~~~~~~~~~----------------- 322 (453)
T 4ffc_A 263 IADEVQTGFARTGAWFASEHEGIVPDIVT--MAKGIAG-GMPLSAVTGRAELMDAVYAGGLGG----------------- 322 (453)
T ss_dssp EEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECGGGGT-TSSCEEEEEEHHHHTTSCTTSSCC-----------------
T ss_pred EEecCccCCCcccccchhhhcCCCcchHh--hhhhhcC-CcCeEEEEECHHHHhhhcccCcCC-----------------
Confidence 9999975 2211 111110122378765 5597774 456899999998887776543221
Q ss_pred cccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc
Q 037063 393 TLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR 472 (588)
Q Consensus 393 ~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r 472 (588)
|.+...+ ..++..++|+.++. +.+.++++++.+++++.|.++.. ..+.+..+. ..
T Consensus 323 -----------t~~~~~~-~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~~~~-----~~ 377 (453)
T 4ffc_A 323 -----------TYGGNPV-TCAAAVAALGVMRE---LDLPARARAIEASVTSRLSALAE-----EVDIIGEVR-----GR 377 (453)
T ss_dssp -----------SSSSCHH-HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHH-----HCSSEEEEE-----EE
T ss_pred -----------CCCcCHH-HHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHh-----hCCCeEEEE-----ee
Confidence 1111111 11344466666654 34455556666666666554310 023333221 24
Q ss_pred ccEEEEEeecCCC---CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC
Q 037063 473 GPSLAFNVFDWNG---TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL 549 (588)
Q Consensus 473 g~iv~f~~~~~~g---~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~ 549 (588)
|.++.+.+.+... .......+.+.|.++||.++++.. . ...+|+++++.
T Consensus 378 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------------~-~~~iRi~~~~~ 429 (453)
T 4ffc_A 378 GAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGT---------------------------F-GNVIRLLPPLV 429 (453)
T ss_dssp TTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECT---------------------------T-SCEEEECCCTT
T ss_pred ceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCC---------------------------C-CCEEEEECCCC
Confidence 6777777743100 001234566777788999876511 1 12899999999
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q 037063 550 TNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 550 ~t~eDv~~li~~l~~~l~~ 568 (588)
.+.|||+++++.|++++++
T Consensus 430 ~t~e~i~~~l~~l~~~l~~ 448 (453)
T 4ffc_A 430 IGDDLLDEGITALSDIIRA 448 (453)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998875
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-15 Score=161.05 Aligned_cols=351 Identities=9% Similarity=-0.022 Sum_probs=207.9
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|||..+. |.-++.+++++.+.+... .+. + .. .+ ..+...+
T Consensus 59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~--~~~--~--------------------~~----~~--~~~~~~~ 108 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDF--THT--C--------------------FM----VT--PYEGYVA 108 (451)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTC--SCC--T--------------------TT----TS--CCHHHHH
T ss_pred CCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhc--ccc--c--------------------CC----cc--CCHHHHH
Confidence 57789998764 445888888887665321 111 0 00 00 1355678
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCC-CeEE-EcCCCchhHHHHHHHHHH-----h-----cCCEE
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSN-PRLL-TVYDHENEAAALMIESSK-----K-----RGARV 251 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~g-d~ll-~~~e~~s~~~~~~~~~a~-----~-----~G~~v 251 (588)
++++++++++.+. .+.|+||+|+|+|+.+++......+| ++|+ ....||...... ..+.. + ....+
T Consensus 109 la~~l~~~~~~~~-~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~-~~~~~~~~~~~~~~~~~~~~~ 186 (451)
T 3oks_A 109 VCEQLNRLTPVRG-DKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLT-MALTAKVMPYKDGFGPFAPEI 186 (451)
T ss_dssp HHHHHHHHSSCCS-SEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHH-HHHCCCCTTTTTTCCSCCSSE
T ss_pred HHHHHHHhCCcCC-CCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHH-HHhcCCCcccccCCCCCCCCc
Confidence 9999999987542 23599999999999998876521134 5555 556666533222 11100 0 11256
Q ss_pred EEEeccCC--C----------CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcE
Q 037063 252 SSAEFAWP--N----------LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWH 314 (588)
Q Consensus 252 ~~v~~~~~--~----------~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~ 314 (588)
..+++..+ + +..+.+.+++.|.+ ....+++.+|++..+++..|.+.| +++| ++|+++|++
T Consensus 187 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~---~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~ 263 (451)
T 3oks_A 187 YRAPLSYPFRDAEFGKELATDGELAAKRAITVIDK---QIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVV 263 (451)
T ss_dssp EEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHH---HTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCE
T ss_pred EEeCCCccccccccccccchhhHHHHHHHHHHHHh---hcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCE
Confidence 66665310 0 00123444444441 111246788888888888889888 9999 999999999
Q ss_pred EEEeCCCc-CCCC--CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccc
Q 037063 315 VLLDATAL-GSKD--MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIEL 391 (588)
Q Consensus 315 vvvDaa~~-~~~d--~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~ 391 (588)
+|+|.++. ++.. ...+......+|++ ++.|.+|. +..+|++++++++++.+.+...+. +
T Consensus 264 lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~-G~~iG~v~~~~~~~~~~~~~~~~~--t------------- 325 (451)
T 3oks_A 264 FIADEVQTGFARTGAMFACEHEGIDPDLI--VTAKGIAG-GLPLSAVTGRAEIMDSPHVSGLGG--T------------- 325 (451)
T ss_dssp EEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCEEEEEEHHHHTCSCTTSBCC--S-------------
T ss_pred EEEEecccCCCccccchhhhhcCCCCCee--eehhhhhC-CcceEEEEECHHHHhhhcCCCcCC--C-------------
Confidence 99999975 2211 11111112237877 55697774 456899999998887776433221 0
Q ss_pred ccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCC
Q 037063 392 ETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFD 471 (588)
Q Consensus 392 ~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~ 471 (588)
| +.+..+ .++..++|+.+++ +.+.++.+++.+++++.|.++.. ..+.+..+. .
T Consensus 326 -------~----~~~~~~---~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~-----~~~~~~~~~-----~ 378 (451)
T 3oks_A 326 -------Y----GGNPIA---CAAALATIETIES---EGLVARAQQIEKIMKDRLGRLQA-----EDDRIGDVR-----G 378 (451)
T ss_dssp -------S----SSCHHH---HHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHH-----HCTTEEEEE-----E
T ss_pred -------C----CCCHHH---HHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHh-----hCCCeEEEE-----E
Confidence 0 011111 1344466766654 34555666666666666655310 013333221 2
Q ss_pred cccEEEEEeecCCC---CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCC
Q 037063 472 RGPSLAFNVFDWNG---TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGC 548 (588)
Q Consensus 472 rg~iv~f~~~~~~g---~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~ 548 (588)
.|.++.+.+.+... .......+.+.|.++||.++++... . ..+|+++++
T Consensus 379 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--------------------------~--~~iRi~~~~ 430 (451)
T 3oks_A 379 RGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTY--------------------------G--NVVRFLPPL 430 (451)
T ss_dssp ETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTT--------------------------S--CEEEECCCT
T ss_pred eeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCC--------------------------C--CEEEEECCC
Confidence 46778787743100 0012445677777889998764110 1 289999999
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 037063 549 LTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 549 ~~t~eDv~~li~~l~~~l~~ 568 (588)
..+.|||+++++.|++++++
T Consensus 431 ~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 431 SIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp TCCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999998763
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-14 Score=152.66 Aligned_cols=358 Identities=13% Similarity=0.063 Sum_probs=211.5
Q ss_pred CCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCch--hHHHHHHHHHHHHHhCCC
Q 037063 118 IGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEE--SELESKIRKRIMDFMNIS 195 (588)
Q Consensus 118 a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~--~~~~~~~r~~ia~~lga~ 195 (588)
++-...|+.|++++...+... |-.+.+. +.+||+.+ .+++.-++++..++||++
T Consensus 61 ASEN~~S~aV~~a~gS~ltnK-----------------------YaEGyPg-~RyYgGce~vD~iE~la~~rak~lF~a~ 116 (490)
T 3ou5_A 61 ASENFCSRAALEALGSCLNNK-----------------------YSEGYPG-KRYYGGAEVVDEIELLCQRRALEAFDLD 116 (490)
T ss_dssp TTCCCCCHHHHHHHTSGGGTC-----------------------CCCC-----------CHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCcCCHHHHHHhcCccccc-----------------------ccCCCCC-ccccCCChHHHHHHHHHHHHHHHHhCCC
Confidence 677789999999975444321 1122222 34566654 778888899999999998
Q ss_pred CCCceE-EEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchh-HHHHHHH----HHHhcCCEEEEEeccCCCCccCHHHH
Q 037063 196 EDDYTL-VFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENE-AAALMIE----SSKKRGARVSSAEFAWPNLRIHSGKL 268 (588)
Q Consensus 196 ~~e~~v-vft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~-~~~~~~~----~a~~~G~~v~~v~~~~~~~~i~~e~l 268 (588)
..++.| |=.-+++.|+..+..++ ++|||+|+ .+..+..- ++..+.. -+..+-.++...+++..++.||.+++
T Consensus 117 ~A~w~VNVQP~SGs~AN~avy~Al-l~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~ 195 (490)
T 3ou5_A 117 PAQWGVNVQPYSGSPANLAVYTAL-LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQL 195 (490)
T ss_dssp TTTEEEECCCSSHHHHHHHHHHHH-CC-CCCEECBC----------------------------CBCEETTTTEECHHHH
T ss_pred ccccCCCCCcCCHHHHHHHHHHHH-cCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHH
Confidence 664322 33347788888888999 99999987 22222110 1111000 00111234555566767889999999
Q ss_pred HHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-----CCCCCCCCCCCCCcEEEe
Q 037063 269 MKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS-----KDMDTLGLSLFKPDFLIC 342 (588)
Q Consensus 269 ~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~-----~d~~~l~l~~~~~D~vv~ 342 (588)
++...+ .+++||++-... .-..+|++++ ++|++.|+++++|.+|..+ .-..++. .+|++.+
T Consensus 196 ~~~A~~-------~kPklIi~G~Sa--Y~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~----~ADvVTt 262 (490)
T 3ou5_A 196 ALTARL-------FRPRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTT 262 (490)
T ss_dssp HHHHHH-------HCCSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEE
T ss_pred HHHHhh-------cCCCeEEECCcc--CccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccc----cceEEec
Confidence 999874 578999887644 4567899999 9999999999999998775 2235554 2899999
Q ss_pred ccCc-cCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccc-cCCCCCccchhhHHHHHHHH
Q 037063 343 SFYK-IFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS-KFPESSISGVSSKLVECKGL 420 (588)
Q Consensus 343 S~~K-~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~-e~GT~~~~~~~~~~al~~aL 420 (588)
|.|| +.| |.| |+++.+++... ..+.. +. ...... ...++. ..|- -.|.|-...+ ++...++
T Consensus 263 TTHKTLrG--PrG-G~Il~~~~~~~-~~~k~-~~-~~~~~~-----~kkin~---aVFPg~qggp~~h~I---AAkAVaf 325 (490)
T 3ou5_A 263 TTHKTLRG--ARS-GLIFYRKGVKA-VDPKT-GR-EIPYTF-----EDRINF---AVFPSLQGGPHNHAI---AAVAVAL 325 (490)
T ss_dssp ESSSTTCS--CSC-EEEEEECSEEE-ECC---CC-EEECCC-----HHHHHH---HHTTTTCSSCCHHHH---HHHHHHH
T ss_pred cccccccC--CCc-eEEEecccccc-ccccc-cc-hhHHHH-----HHHHHh---hcCccccccchHHHH---HHHHHHH
Confidence 9999 455 875 88888876421 11100 00 000000 000000 0120 1233333333 6655666
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhC
Q 037063 421 DHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRH 500 (588)
Q Consensus 421 ~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~ 500 (588)
.....-......+++...++.|.+.|.+. +++|+... .....+.+.+.... ++...+++.|++.
T Consensus 326 ~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~----------G~~vvsGg---TdnHlvLvDl~~~g---~tG~~ae~~Le~a 389 (490)
T 3ou5_A 326 KQACTPMFREYSLQVLKNARAMADALLER----------GYSLVSGG---TDNHLVLVDLRPKG---LDGARAERVLELV 389 (490)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHT----------TCEEGGGS---CSSSEEEEECGGGT---CCHHHHHHHHHHT
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHhC----------CCeeecCC---CCceEEEEeccccC---CCHHHHHHHHHHc
Confidence 54333224667788888888888888874 45666432 34567777775532 6788899999999
Q ss_pred CcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC----CCHHHHHHHHHHHHHhhh
Q 037063 501 NISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL----TNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 501 gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~----~t~eDv~~li~~l~~~l~ 567 (588)
||.+---. . |+- . ...-.+.|||..... -.++|+..+.++|.+.|+
T Consensus 390 gItvNkN~-i-P~D--~-----------------sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 390 SITANKNT-C-PGD--R-----------------SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp TEECEEEC-C-TTC--C-----------------CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CcEECCCC-C-CCC--C-----------------CCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99763210 0 100 0 001112799986322 267999999999988775
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-15 Score=159.81 Aligned_cols=334 Identities=12% Similarity=0.047 Sum_probs=203.1
Q ss_pred CCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHH
Q 037063 110 NNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESK 183 (588)
Q Consensus 110 ~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~ 183 (588)
.+..|+|.++. |+.++.+++++.+.+... .. ++. ..+...+
T Consensus 50 ~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---~~-----------------------------~~~-~~~~~~~ 96 (424)
T 2e7u_A 50 DGNRYLDYVMSWGPLILGHAHPKVLARVRETLERG---LT-----------------------------FGA-PSPLEVA 96 (424)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC---SC-----------------------------CSS-CCHHHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhC---CC-----------------------------CCC-CCHHHHH
Confidence 56779998753 456788888886665321 00 000 1456678
Q ss_pred HHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhC-CCCCCCeE-EEcCCCchhHHHHHHHHH----------HhcCC--
Q 037063 184 IRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY-PFYSNPRL-LTVYDHENEAAALMIESS----------KKRGA-- 249 (588)
Q Consensus 184 ~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~-~~~~gd~l-l~~~e~~s~~~~~~~~~a----------~~~G~-- 249 (588)
++++++++++ .++ .|+||+|+++|+.+++... .+..+++| +....||......+ ..+ ...|+
T Consensus 97 l~~~l~~~~~-~~~--~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~p~~~g~~~ 172 (424)
T 2e7u_A 97 LAKKVKRAYP-FVD--LVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLL-VEAGSGALTLGVPSSAGVPE 172 (424)
T ss_dssp HHHHHHHHCT-TCC--EEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGS-EECCSSSCCBCEESSTTCCH
T ss_pred HHHHHHHhCC-CCC--EEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHH-HhcCCcccccCCCCCCCCCC
Confidence 9999999986 444 4999999999999888751 02344664 45555654111110 000 01122
Q ss_pred ----EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCC
Q 037063 250 ----RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDAT 320 (588)
Q Consensus 250 ----~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa 320 (588)
.+..++. .|.++|++++++. .+++++|++..+++.+|.+.| +++| ++ +++|+++|+|.+
T Consensus 173 ~~~~~~~~~~~------~d~~~le~~l~~~-----~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv 240 (424)
T 2e7u_A 173 EYAKLTLVLEY------NDPEGLREVLKRR-----GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEV 240 (424)
T ss_dssp HHHTTEEEECT------TCHHHHHHHHHHH-----GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECT
T ss_pred ccCCceEeCCC------CCHHHHHHHHHhC-----CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecC
Confidence 3444443 3789999988720 135778888777777999998 8899 89 999999999999
Q ss_pred CcCCCCCCCC---CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccccc
Q 037063 321 ALGSKDMDTL---GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDES 397 (588)
Q Consensus 321 ~~~~~d~~~l---~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~ 397 (588)
+. +...... +.....+|++ |++|.+|. +..+|++++++++++.+.+....
T Consensus 241 ~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~G~~~~~~~~~~~~~~~~~~----------------------- 293 (424)
T 2e7u_A 241 MT-GFRLAFGGATELLGLKPDLV--TLGKILGG-GLPAAAYAGRREIMEKVAPLGPV----------------------- 293 (424)
T ss_dssp TT-TTTSSTTHHHHHHTCCCSEE--EECGGGGT-TSSCEEEEECHHHHTTBTTTSSB-----------------------
T ss_pred cc-ccccchhHHHHHhCCCcchh--hhhhhhhC-CcceEEEEEcHHHHhhhcccCCc-----------------------
Confidence 87 2111111 0001237865 77898874 45689999999887776542100
Q ss_pred ccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE
Q 037063 398 SQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA 477 (588)
Q Consensus 398 ~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~ 477 (588)
+ ..+|.+...+ ..++..++|+.+++. +.+.++++++.+++++.|.++.... +... .+. ..|.++.
T Consensus 294 -~-~~~t~~~~~~-~~aaa~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~---~~~~-~~~------~~g~~~~ 358 (424)
T 2e7u_A 294 -Y-QAGTLSGNPL-AMAAGLATLELLEEN--PGYYAYLEDLGARLEAGLKEVLKEK---GLPH-TVN------RVGSMIT 358 (424)
T ss_dssp -C-CCCTTCSCHH-HHHHHHHHHHHHHHC--THHHHHHHHHHHHHHHHHHHHHHHT---TCCC-EEE------EETTEEE
T ss_pred -c-cCCCCCCCHH-HHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHhC---CCce-EEE------eeceEEE
Confidence 0 1112121111 124555777776652 6678888888899988887752000 1111 111 2466777
Q ss_pred EEeecCCC---------CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCC
Q 037063 478 FNVFDWNG---------TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGC 548 (588)
Q Consensus 478 f~~~~~~g---------~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~ 548 (588)
+.+.+... .......+.+.|.++||.++.|. .+ .+|++ +
T Consensus 359 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------------------------~~--~~~~~--~ 406 (424)
T 2e7u_A 359 VFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSN----------------------------FE--AAFLS--V 406 (424)
T ss_dssp EESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSS----------------------------SS--CEECC--T
T ss_pred EEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccC----------------------------CC--ceEee--c
Confidence 77643100 00113456666668999987651 11 45655 6
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 037063 549 LTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 549 ~~t~eDv~~li~~l~~~l 566 (588)
..+.+|++++++.|+++|
T Consensus 407 ~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 407 AHREEDVEKTLEALRKAL 424 (424)
T ss_dssp TCCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 789999999999998754
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-15 Score=158.47 Aligned_cols=325 Identities=11% Similarity=0.002 Sum_probs=190.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCC----CCeEEEcCCCchhHHHHHHHHHHhcCCEEEE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYS----NPRLLTVYDHENEAAALMIESSKKRGARVSS 253 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~----gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~ 253 (588)
..+.+.+...+.+++|.+. ....++++|+|.+.++++.+. .++ ++.|+.+...|.... +.+...|+..++
T Consensus 97 ~~~e~~~~~~~~~~lGlp~-~~~~~lV~GaT~~~~a~~L~a-ar~~~~~~~~viv~r~aHkSv~----kAl~l~Gl~p~~ 170 (450)
T 3bc8_A 97 NKITNSLVLNVIKLAGVHS-VASCFVVPMATGMSLTLCFLT-LRHKRPKAKYIIWPRIDQKSCF----KSMVTAGFEPVV 170 (450)
T ss_dssp HHHHHHHHHHHHHHHTCTT-CCEEEEESSCHHHHHHHHHHH-HHHHCTTCCEEEEECCCCHHHH----HHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhCCCCC-CceEEEECCHHHHHHHHHHHH-cchhhcCCCEEEEECCcHHHHH----HHHHHcCCeeEE
Confidence 4677889999999999964 456799999986655554443 233 677765555554233 344567999988
Q ss_pred Eecc--CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCC-CCC
Q 037063 254 AEFA--WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKD-MDT 329 (588)
Q Consensus 254 v~~~--~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d-~~~ 329 (588)
++.. .+.+.+|+++|+++|.+. ..+.+.+|+.+...+.+|...|+++| ++|+++|++++||+|+.+-.. ..+
T Consensus 171 v~~~~~~~~~~id~~~le~aI~~~----~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~ 246 (450)
T 3bc8_A 171 IENVLEGDELRTDLKAVEAKIQEL----GPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMH 246 (450)
T ss_dssp ECCEEETTEEECCHHHHHHHHHHH----CGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHH
T ss_pred EEeeecCccCCcCHHHHHHHHHhc----CCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHh
Confidence 8662 146789999999999731 11244555555444446799999999 999999999999999776310 011
Q ss_pred C---CCCCCCCcEEEeccCccCCCCCCceEEEEEeCc-chhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 330 L---GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKS-SASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 330 l---~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~-~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
+ .+...++|+++.|.||+++. |+|.+++++++. .++.+...+.+. ..++|
T Consensus 247 l~~~a~~~~~AD~~v~S~HK~l~a-~~~~~~l~~rd~~~~~~~~~~~~g~-------------------------~s~Sp 300 (450)
T 3bc8_A 247 LIQQGARVGRIDAFVQSLDKNFMV-PVGGAIIAGFNEPFIQDISKMYPGR-------------------------ASASP 300 (450)
T ss_dssp HHHHHHHHSCCCEEEEEHHHHHSC-CSSCEEEEESCHHHHHHHHHHSCSC-------------------------BCSHH
T ss_pred HHHHHhcccCCCEEEECCccCCCc-hhccEEEEecCHHHHHHHHHHhhcC-------------------------CcccH
Confidence 1 00001499999999998775 999999999753 333332222110 01111
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCC-
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWN- 484 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~- 484 (588)
+ ..+...+..+-.-|+.++.++...+++++++.|.++.-. -+.++++... .+.-.++.+....
T Consensus 301 s-------L~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~------~g~~~l~~~~---~~~~~~~~l~~~~~ 364 (450)
T 3bc8_A 301 S-------LDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEA------HNERLLQTPH---NPISLAMTLKTIDG 364 (450)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TTCCBCCCTT---CSSEEEEECTTTSS
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh------cCceecCCcc---CCCcceeecccccc
Confidence 1 112233322222346666777788899999999875200 0455555321 1111223332110
Q ss_pred CCCcCHHHHHHHHHhCCc---Eecc-ccc---cCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHH
Q 037063 485 GTRIDPALVQKLADRHNI---SLSC-GFL---QNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYR 557 (588)
Q Consensus 485 g~~i~~~~v~~~l~~~gI---~v~~-G~~---c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~ 557 (588)
....++..+.-.+...|+ .+.+ |.. +...+ +.| ...-.......|-+.++..++.+|+++
T Consensus 365 ~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l-~~~------------gi~~E~~~~~~i~~~~sig~~~~di~~ 431 (450)
T 3bc8_A 365 HHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTF-RGF------------MSHADNYPCAYLNAAAAIGMKMQDVDL 431 (450)
T ss_dssp SSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEE-ETT------------TTTSSCCSSCEEEEECCTTCCHHHHHH
T ss_pred cccCCCceeEEEecCCCCccceeeecccccchhHHHH-HHc------------CCeeecCCCCcEEEEecCCCCHHHHHH
Confidence 001345555444444454 2220 000 00000 000 000001222388888899999999999
Q ss_pred HHHHHHHhhh
Q 037063 558 LWAFVSRFLD 567 (588)
Q Consensus 558 li~~l~~~l~ 567 (588)
|++.|+++++
T Consensus 432 l~~~L~~~~~ 441 (450)
T 3bc8_A 432 FIKRLDKCLN 441 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999754
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=6.4e-14 Score=149.02 Aligned_cols=292 Identities=10% Similarity=0.109 Sum_probs=178.1
Q ss_pred HHHHHHHHHh-CC-----CCCCceEEEecCHHHHHHHHHHhCCCC--CCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEE
Q 037063 183 KIRKRIMDFM-NI-----SEDDYTLVFTANQSSAFKLLAESYPFY--SNPRLLTVYDHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 183 ~~r~~ia~~l-ga-----~~~e~~vvft~g~T~al~lv~~s~~~~--~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
++|+.|++++ +. ++++.+|+.|.|+++|+.+++..+ .. + |+|++....+.+. ...++..|++++.+
T Consensus 76 ~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l-~~~~~-d~Vlv~~P~y~~~----~~~~~~~g~~~~~v 149 (405)
T 3k7y_A 76 DFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFL-KMLNV-ETLYVTNPPYINH----VNMIESRGFNLKYI 149 (405)
T ss_dssp HHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHH-HTTTC-CEEEEESSCCHHH----HHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHH-HhcCC-CEEEEeCCCCHhH----HHHHHHcCCeEEEE
Confidence 6777777765 21 223224799999999999998877 44 7 9987666654422 34567789999999
Q ss_pred ec-cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCC-CCCCCccCCHHH---H-HHHHHcCcEEEEeCCCc-CCCC-
Q 037063 255 EF-AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQ-SKVTGARYSYMW---M-SVAAEKGWHVLLDATAL-GSKD- 326 (588)
Q Consensus 255 ~~-~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~-sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~-~~~d- 326 (588)
|+ +..+..+|.++|++.+.+ .++++++++... +||||..++.++ | ++|+++|++||+|.+.. +..+
T Consensus 150 ~~~~~~~~~~d~~~l~~~l~~------~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~ 223 (405)
T 3k7y_A 150 NFFDYNLIDINYDLFLNDLRN------IPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTN 223 (405)
T ss_dssp CCEETTTTEECHHHHHHHHHH------SCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSS
T ss_pred eccccccCCcCHHHHHHHHHh------CCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCC
Confidence 98 423578999999999972 135677777654 899999999887 4 67899999999998732 1110
Q ss_pred CC----CC-CC-CCCCCcEEEeccCccCCCCCCceEEEEE---eCcchhcccCCCCCCCceEeeecCCCccccccccccc
Q 037063 327 MD----TL-GL-SLFKPDFLICSFYKIFGENPSGFGCLFV---KKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDES 397 (588)
Q Consensus 327 ~~----~l-~l-~~~~~D~vv~S~~K~~G~~P~G~G~L~v---~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~ 397 (588)
.. .+ .+ +...--+++.|+.|.||++..++|++++ ++++++.+...... . .
T Consensus 224 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~---~--------------~---- 282 (405)
T 3k7y_A 224 LEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCF---I--------------V---- 282 (405)
T ss_dssp TTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHH---H--------------H----
T ss_pred cccchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHH---H--------------H----
Confidence 00 00 00 1111346788999999865677999875 23333322211000 0 0
Q ss_pred ccccCCCCCccchhhHHHHHHHHHH-------HHHhCHHHHHHHHHHHHHHHHHHHH----cccCCCCCCCCC-eEEEeC
Q 037063 398 SQSKFPESSISGVSSKLVECKGLDH-------ADALGLILISNRARYLINWLANALM----NLHHPHSETGIP-LVRIYG 465 (588)
Q Consensus 398 ~f~e~GT~~~~~~~~~~al~~aL~~-------l~~~G~~~i~~r~~~L~~~l~~~L~----~L~h~~~~~g~~-~v~i~~ 465 (588)
+. ....++..+. .++..+|.. .+. +..+.++.+..++++.+.|. ++ |.+ .++++.
T Consensus 283 ~~-~~~~~~~~~q---~~~~~~l~~~~l~~~~~~~--l~~~~~~~~~~R~~l~~~L~~~~~~~-------g~~~~~~~~~ 349 (405)
T 3k7y_A 283 RK-FYSSPVIHTN---RILCQLLNNQNLKLNWIKE--LSQLSQRITNNRILFFNKLETYQKKY-------NLNYDWNVYK 349 (405)
T ss_dssp HT-TTSSCCHHHH---HHHHHHHHCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHGGGG-------TCCCCGGGGS
T ss_pred hc-ccCCCcHHHH---HHHHHHhCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhhhc-------CCCCCCcccc
Confidence 00 0001111110 122233321 111 35566778888889999998 75 211 122222
Q ss_pred CCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe
Q 037063 466 PKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA 545 (588)
Q Consensus 466 p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS 545 (588)
.+|++..|. + ++.+.+.++ .++||.+.+| . |+|
T Consensus 350 -----p~gg~f~~~--~-----l~~~~~~~L-~~~gV~v~p~---------------------------------~-Ris 382 (405)
T 3k7y_A 350 -----KQRGLFSFV--P-----LLAKIAEHL-KTHHIYIINN---------------------------------G-RIN 382 (405)
T ss_dssp -----SCCSSEEEC--G-----GGGGGTTTT-TTTTEECCTT---------------------------------S-EEE
T ss_pred -----CCceEEEec--C-----CCHHHHHHH-HHCCEeecCC---------------------------------C-eEE
Confidence 345655442 2 223344455 7889987643 1 899
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhh
Q 037063 546 LGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 546 lg~~~t~eDv~~li~~l~~~l~~ 568 (588)
++.. +.++|+++++.|++++++
T Consensus 383 ~a~~-~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 383 VSGI-TKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp GGGC-CTTHHHHHHHHHHHHHHC
T ss_pred Eecc-CHHHHHHHHHHHHHHHhh
Confidence 8633 558999999999998764
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-13 Score=147.48 Aligned_cols=336 Identities=12% Similarity=0.073 Sum_probs=196.2
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|.++.-|||+.+. |--.+.+++++.+.+..... . .. + ....
T Consensus 83 D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~--~---------------------~~-~---------~~~~ 129 (454)
T 4ao9_A 83 DADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGIN--L---------------------TG-H---------NLLE 129 (454)
T ss_dssp ETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSC--C---------------------CS-E---------ESSH
T ss_pred ECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCC--c---------------------cC-C---------cHHH
Confidence 3468899998654 44567888887666533110 0 00 0 1223
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCC-CeEE-EcCCCchhHHHHHHHHHHhc--CCEEEEEecc
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSN-PRLL-TVYDHENEAAALMIESSKKR--GARVSSAEFA 257 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~g-d~ll-~~~e~~s~~~~~~~~~a~~~--G~~v~~v~~~ 257 (588)
.++.++|++.+.- -+.|.|++++|+|+..+++....-.| ++|+ ....||......+ ...... ...+..+|.
T Consensus 130 ~~lae~l~~~~p~---~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~-~~~~~~~~~~~~~~~p~- 204 (454)
T 4ao9_A 130 GRLARLICERFPQ---IEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFG-ARPSPTTVPFDFLVLPY- 204 (454)
T ss_dssp HHHHHHHHHHSTT---CSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBS-SSBCTTSCCSEEEEECT-
T ss_pred HHHHHHHHHhCCC---CCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCcccccc-ccccCccCCCCcccCCC-
Confidence 4677778888753 23599999999998877654311123 3455 5556664221110 000001 123333333
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCcCC--C--CCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATALGS--K--DMD 328 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~~~--~--d~~ 328 (588)
-|.+.+++.|.+ ..+++..|++.-+....|.+.| ++.| ++|+++|+++|+|.++..- . -..
T Consensus 205 -----nd~~~l~~~l~~-----~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tGR~G~~~a~e 274 (454)
T 4ao9_A 205 -----NDAQTARAQIER-----HGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAPHGLAN 274 (454)
T ss_dssp -----TCHHHHHHHHHH-----TGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGGGGSTTCHHH
T ss_pred -----chHHHHHHHHhh-----cCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcCCCccccchh
Confidence 267889988873 1245788888888888999998 8889 9999999999999998641 0 011
Q ss_pred CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 329 TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
.++ ..||+++ +-|.+|. ...+|++..++++++.+.+.... .+ ..||.+-.
T Consensus 275 ~~g---v~PDi~t--~gK~lgg-G~Piga~~~~~ei~~~~~~~~~~-----------------------~~-h~~T~~gn 324 (454)
T 4ao9_A 275 KLG---IRSDLTT--LGKYIGG-GMSFGAFGGRADVMALFDPRTGP-----------------------LA-HSGTFNNN 324 (454)
T ss_dssp HHT---CCCSEEE--EEGGGGT-TSSCEEEEECHHHHGGGCTTTCS-----------------------CC-CCCTTTTC
T ss_pred ccC---CCCcEEE--eccccCC-CCcceeeeeHHHHHHHHhhccCC-----------------------cc-ccCCCCCC
Confidence 223 2489875 4575552 34589999999998877543210 00 23343332
Q ss_pred chhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCC--
Q 037063 409 GVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGT-- 486 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~-- 486 (588)
.+ ++.+|+..++.+--+.+.+++.++.++|+++|.++.... +.+ ..+- ..|.++.+.+.+.+-.
T Consensus 325 Pl----a~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~---~~~-~~vr------g~G~m~gi~f~~~~~~~~ 390 (454)
T 4ao9_A 325 VM----TMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANE---GVA-MQFT------GIGSLMNAHFVQGDVRSS 390 (454)
T ss_dssp HH----HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH---TBS-CEEE------EETTEEEEESCCSCCCSG
T ss_pred HH----HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhC---CCC-EEEe------eeceEEEEEEecCCCCCH
Confidence 22 233444444433336677888888888888887652100 111 1121 2356666655321100
Q ss_pred ----CcCHH---HHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHH
Q 037063 487 ----RIDPA---LVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLW 559 (588)
Q Consensus 487 ----~i~~~---~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li 559 (588)
..+.. .+...+-++||.+++. + .+.+|+ ..|+||||+++
T Consensus 391 ~~~~~~d~~~~~~~~~~ll~~Gv~~~p~------------------------------~--~~~~s~--~~T~~dId~~l 436 (454)
T 4ao9_A 391 EDLAAVDGRLRQLLFFHLLNEDIYSSPR------------------------------G--FVVLSL--PLTDADIDRYV 436 (454)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTTEECCTT------------------------------C--EEECCT--TCCHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHCCEEEcCC------------------------------C--CEEEeC--CCCHHHHHHHH
Confidence 11222 2334455678887532 1 455554 46999999999
Q ss_pred HHHHHhhhhh
Q 037063 560 AFVSRFLDAD 569 (588)
Q Consensus 560 ~~l~~~l~~~ 569 (588)
++|+++|++.
T Consensus 437 ~al~~~l~~~ 446 (454)
T 4ao9_A 437 AAIGSFIGGH 446 (454)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 9999998863
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-12 Score=137.85 Aligned_cols=326 Identities=12% Similarity=0.006 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCC---C-CeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 180 LESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYS---N-PRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 180 ~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~---g-d~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
+-+.+-..+.+.+|.+.. ...++++|+|.++..++.+. .++ | ++|+.+...|-+.+.. +...|++.++++
T Consensus 117 ltn~l~ld~L~~~G~~~~-~~~flVnGsTgg~lamilaa-~r~~rpg~d~VIvpRn~HKSv~kA----liL~Gl~Pv~V~ 190 (501)
T 3hl2_A 117 ITNSLVLDIIKLAGVHTV-ANCFVVPMATGMSLTLCFLT-LRHKRPKAKYIIWPRIDQKSCFKS----MITAGFEPVVIE 190 (501)
T ss_dssp HHHHHHHHHHHHTTCTTC-CEEEEESSCHHHHHHHHHHH-HHHHCTTCCEEEEECCCCHHHHHH----HHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCC-CcEEEECcHHHHHHHHHHHH-cCcccCCCCEEEEecchHHHHHHH----HHHcCCeEEEEe
Confidence 333344444455698743 36899999997666555544 443 4 7877665544434444 345699999997
Q ss_pred cc--CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCC-CCccCCHHHH-HHHHHcCcEEEEeCCCcCCC----C-
Q 037063 256 FA--WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKV-TGARYSYMWM-SVAAEKGWHVLLDATALGSK----D- 326 (588)
Q Consensus 256 ~~--~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~-tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~----d- 326 (588)
.. .+...+|+++|+++|++. .....+++++..++. .|...|+++| ++||++|++++||+|+.+-. +
T Consensus 191 p~~d~~~~~id~e~le~aI~e~-----ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~l 265 (501)
T 3hl2_A 191 NVLEGDELRTDLKAVEAKVQEL-----GPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHL 265 (501)
T ss_dssp EEEETTEEEECHHHHHHHHHHH-----CGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHH
T ss_pred eeecccccCCCHHHHHHHHHhc-----CCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhh
Confidence 63 245789999999999831 123444444444433 4577999999 99999999999999966631 0
Q ss_pred -CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCc-chhcccCCCCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 327 -MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKS-SASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 327 -~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~-~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
...+.+ -++|+++.|.||++-. |.|.|+++.+++ .++.+...+.| |
T Consensus 266 p~sA~~~--GrAD~vVqS~HK~llv-pIGG~ii~~~d~e~l~~~~~~yPG-----------------------------r 313 (501)
T 3hl2_A 266 IQQGARV--GRIDAFVQSLDKNFMV-PVGGAIIAGFNDSFIQEISKMYPG-----------------------------R 313 (501)
T ss_dssp HHHHHHH--SCCCEEEEEHHHHHCC-CSSCEEEEESCHHHHHHHHHTSCS-----------------------------C
T ss_pred HHHHHhc--CCCcEEEeccccccee-ecCceEEEeCCHHHHHHHHHhCCC-----------------------------C
Confidence 011111 1399999999996654 888777777763 44544333322 1
Q ss_pred CCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCC
Q 037063 405 SSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWN 484 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~ 484 (588)
.+-... +.+..++..+-.-|+.++.++...+++||+++|.++.... +-+++.-+ ...=-+++.+....
T Consensus 314 ~S~Sps---ldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~------ge~ll~~~---~n~is~a~tl~~~~ 381 (501)
T 3hl2_A 314 ASASPS---LDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAY------NERLLHTP---HNPISLAMTLKTLD 381 (501)
T ss_dssp BCSHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------TCCBCCCT---TCSSEEEEECTTSC
T ss_pred CCCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ChhhcCCC---CCceeEEEeccccc
Confidence 111111 3344566666666789999999999999999999874322 11222211 11123444443321
Q ss_pred C-CCcCHHHHHHHHHhCCcE----eccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHH
Q 037063 485 G-TRIDPALVQKLADRHNIS----LSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLW 559 (588)
Q Consensus 485 g-~~i~~~~v~~~l~~~gI~----v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li 559 (588)
. ..-....+-..|-..+|. |..|..-..+... +.. .+......-.+++.+.-..-.+.+|||.|+
T Consensus 382 ~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~---------f~~-~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~ 451 (501)
T 3hl2_A 382 EHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYT---------FRG-FMSHTNNYPCAYLNAASAIGMKMQDVDLFI 451 (501)
T ss_dssp TTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEE---------ESS-TTTTSSCCSSCEEEEECCTTCCHHHHHHHH
T ss_pred ccccccHHHHHHHHHhcCCCcceeecCCCceEECCee---------ecC-cccCCCCCCchHHHHHHHcCCCHHHHHHHH
Confidence 1 112244556666666663 1222100000000 000 000000011238888888888999999999
Q ss_pred HHHHHhhhhhh
Q 037063 560 AFVSRFLDADF 570 (588)
Q Consensus 560 ~~l~~~l~~~~ 570 (588)
+.|.+.+.+-.
T Consensus 452 ~~l~~~~~~~~ 462 (501)
T 3hl2_A 452 KRLDRCLKAVR 462 (501)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998876543
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5.4e-15 Score=159.66 Aligned_cols=300 Identities=10% Similarity=-0.012 Sum_probs=180.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEE-EcCCCchhHHHHHHHHHHhcCC--EEEE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLL-TVYDHENEAAALMIESSKKRGA--RVSS 253 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~--~v~~ 253 (588)
.+...++.++|+++++ ..+ .++|++++|+|+..++.... +..+++|+ ....||......+.. ....|+ .+..
T Consensus 139 ~~~~~~Lae~L~~~~p-~~~--~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg-~~~~g~~~~~~~ 214 (465)
T 2yky_A 139 TENEALFAEAVCDRFP-SID--LVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASG-HAPTNAPYHVVL 214 (465)
Confidence 3455688889999985 233 39999999999998887642 23346655 555666533222100 012344 2333
Q ss_pred EeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCcCCCCCC
Q 037063 254 AEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATALGSKDMD 328 (588)
Q Consensus 254 v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~~~~d~~ 328 (588)
++. -|+++|+++|++ . .+++++|++..+.+.+|.+.| ++.| ++|+++|+++|+|.++. .. ..
T Consensus 215 ~~~------~d~~~l~~~l~~----~-~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r-~g 281 (465)
T 2yky_A 215 GVY------NDVEGTADLLKR----H-GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SR-LS 281 (465)
Confidence 332 267888888862 1 146888888877777999888 8888 99999999999999987 31 11
Q ss_pred CC---CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 329 TL---GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 329 ~l---~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
.. +.....+|++ ++.|.+|. +..+|++++++++++.+.+...+ .+ + ..+|.
T Consensus 282 ~~~a~~~~gv~pDi~--t~sK~lg~-G~piG~v~~~~~i~~~l~~~~~g---~~-------------------~-~~~T~ 335 (465)
T 2yky_A 282 GGGAQEMLGISADLT--TLGKYIGG-GMSFGAFGGRRDLMERFDPARDG---AF-------------------A-HAGTF 335 (465)
Confidence 11 1111237755 67898883 34589999999988877652111 00 0 01111
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCC-
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWN- 484 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~- 484 (588)
+...+ ..++..++|+.+++ +.+.++++++.++++++|.++.. ...+... ....|.++.|.+.+..
T Consensus 336 ~~npl-a~aAa~aaL~~l~~---~~~~~~~~~~~~~l~~~L~~~~~--------~~~~~~~--v~g~G~~~~i~~~~~~~ 401 (465)
T 2yky_A 336 NNNIL-TMSAGHAALTQIYT---RQAASDLSASGDRFRANLNRIAV--------ENQAPLQ--FTGLGSLGTIHFSRAPI 401 (465)
Confidence 11111 01344466777655 45788888899999998887521 1111111 1135677777654300
Q ss_pred ---CC-----CcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHH
Q 037063 485 ---GT-----RIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTY 556 (588)
Q Consensus 485 ---g~-----~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~ 556 (588)
+. .-....+.+.|.++||.+.++. .+ . +.+..|.|||+
T Consensus 402 ~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~----------------------------~~--~----~s~~~t~edid 447 (465)
T 2yky_A 402 RSAGDVRAADQQLKELFFFHMLRKGIYLAPRG----------------------------MY--A----LSLEIADAGRD 447 (465)
Confidence 00 0012334555556888876541 11 2 44668999999
Q ss_pred HHHHHHHHhhhh
Q 037063 557 RLWAFVSRFLDA 568 (588)
Q Consensus 557 ~li~~l~~~l~~ 568 (588)
++++.|.+++++
T Consensus 448 ~~l~~l~~~l~~ 459 (465)
T 2yky_A 448 AFAEALADFIGE 459 (465)
Confidence 999999988765
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-12 Score=136.33 Aligned_cols=345 Identities=15% Similarity=0.088 Sum_probs=197.7
Q ss_pred cCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHH
Q 037063 105 FHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKI 184 (588)
Q Consensus 105 ~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~ 184 (588)
|..++.=-+|.|-.|-.+..+.|.++....+.... .|+ | +.. .| ..+.
T Consensus 45 ~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~---~~~----------------Y----~p~---~G------~p~l 92 (420)
T 4h51_A 45 PKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNL---DYE----------------Y----LPI---SG------YQPF 92 (420)
T ss_dssp SCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTC---CCC----------------C----CCT---TC------CHHH
T ss_pred CCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCC---CCC----------------C----CCc---CC------hHHH
Confidence 33333445899999998888888887532221110 110 0 010 01 1366
Q ss_pred HHHHHHHh-CC--CCCCceEEEecCHHHHHHHHHHhCC---CCCCCeEEEcCCCchhHHHHHHHHHHhcCCE-EEEEec-
Q 037063 185 RKRIMDFM-NI--SEDDYTLVFTANQSSAFKLLAESYP---FYSNPRLLTVYDHENEAAALMIESSKKRGAR-VSSAEF- 256 (588)
Q Consensus 185 r~~ia~~l-ga--~~~e~~vvft~g~T~al~lv~~s~~---~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~-v~~v~~- 256 (588)
|+.+++++ |- +.+....+-|.|+|.|+...+..+. ..+||+|+++..+..+.. ...+..|++ |...+.
T Consensus 93 r~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~----~i~~~aG~~~V~~~~~~ 168 (420)
T 4h51_A 93 IDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHY----GVVKAAGWKNICTYAYY 168 (420)
T ss_dssp HHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHH----HHHHHTTCCCEEEEECE
T ss_pred HHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHH----HHHHHcCCeEEEeeccc
Confidence 77777764 32 2222234558899988876654331 578999776555554333 233456776 444433
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCC-cCCC-C--CC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATA-LGSK-D--MD 328 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~-~~~~-d--~~ 328 (588)
+..+..++.+.+.+.+.. ..++++++.++.++||||..++.++ | ++|++++++++.|.+- .+.. + ..
T Consensus 169 ~~~~~~~d~~~~~~~l~~-----~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~ 243 (420)
T 4h51_A 169 DPKTVSLNFEGMKKDILA-----APDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTD 243 (420)
T ss_dssp EGGGTEECHHHHHHHHHH-----SCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHH
T ss_pred cccccCCCHHHHHHHHhc-----cCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccc
Confidence 224556788888888762 2367889999999999999999876 4 7899999999999882 2210 0 00
Q ss_pred CC----CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCC
Q 037063 329 TL----GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE 404 (588)
Q Consensus 329 ~l----~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT 404 (588)
.. ..+....-+++.|+.|.||++..++|++.+..+..+....... ... .+ . +. ....
T Consensus 244 ~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~----~l~---------~~-~----r~-~~s~ 304 (420)
T 4h51_A 244 AYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKS----VMD---------SL-I----RE-EYTC 304 (420)
T ss_dssp THHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHH----HHH---------HH-H----HT-TTSS
T ss_pred hHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHH----HHH---------Hh-h----hc-ccCc
Confidence 00 0011113467789999888545569999988776543321110 000 00 0 00 0111
Q ss_pred CCccchhhHHHHHHHHH------HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe-EEEeCCCCCCCcccEEE
Q 037063 405 SSISGVSSKLVECKGLD------HADALGLILISNRARYLINWLANALMNLHHPHSETGIPL-VRIYGPKVMFDRGPSLA 477 (588)
Q Consensus 405 ~~~~~~~~~~al~~aL~------~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~-v~i~~p~~~~~rg~iv~ 477 (588)
++..+. .++...+. .+.+ -++.+.+|++..++.|++.|.++ |.++ +..+. .++++++
T Consensus 305 ~p~~~a---~~~~~~l~d~~l~~~~~~-~~~~m~~r~~~~R~~l~~~L~~~-------g~~~~~~~i~-----~q~GmF~ 368 (420)
T 4h51_A 305 PPAHGA---RLAHLILSNNELRKEWEA-ELSAMAERIRTMRRTVYDELLRL-------QTPGSWEHVI-----NQIGMFS 368 (420)
T ss_dssp CCHHHH---HHHHHHHHSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-------TCSSCCTHHH-----HCCSSEE
T ss_pred chHHHH---HHHHHHhcCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh-------CCCCCCCeec-----CCCceEE
Confidence 111111 11112221 1111 15778888899999999999986 2221 11111 2344444
Q ss_pred EEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHH
Q 037063 478 FNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYR 557 (588)
Q Consensus 478 f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~ 557 (588)
| .+ ++++.+ ++|+++||.+-. .| |||+.. -|.+.|++
T Consensus 369 ~--~g-----ls~e~v-~~L~e~~Vy~~~------------------------------~g----Ris~Ag-l~~~ni~~ 405 (420)
T 4h51_A 369 F--LG-----LSKAQC-EYCQNHNIFITV------------------------------SG----RANMAG-LTHETALM 405 (420)
T ss_dssp E--CC-----CCHHHH-HHHHHTTEECCT------------------------------TC----EEEGGG-CCHHHHHH
T ss_pred e--cC-----cCHHHH-HHHHhCCEEEcC------------------------------CC----EEEecc-CCHHHHHH
Confidence 3 23 567766 466788997642 22 888753 37799999
Q ss_pred HHHHHHHhhhh
Q 037063 558 LWAFVSRFLDA 568 (588)
Q Consensus 558 li~~l~~~l~~ 568 (588)
++++|.+.++.
T Consensus 406 ~a~aI~~vvr~ 416 (420)
T 4h51_A 406 LAQTINDAVRN 416 (420)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999998765
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-10 Score=125.19 Aligned_cols=356 Identities=11% Similarity=0.022 Sum_probs=205.0
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|..+..|||..+. |--.+.+++++.+.+..-. |++ +.. ...+..
T Consensus 60 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~----~~~-------------------~~~-------~~~~~~ 109 (456)
T 4atq_A 60 DVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFT----HTC-------------------FMV-------TPYEGY 109 (456)
T ss_dssp ETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS----CCT-------------------TTT-------SCCHHH
T ss_pred eCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhcc----Ccc-------------------cCc-------cCcHHH
Confidence 3468899998553 5567788888765553211 110 000 012334
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHH-----h-----cCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSK-----K-----RGA 249 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~-----~-----~G~ 249 (588)
.++-+++.+++..+.- ..++|++++|+|+..+++.-....|. +|+ ....||......+ .... + ...
T Consensus 110 ~~lae~L~~~~p~~~~-~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~al-s~t~~~~~~~~~~~p~~~ 187 (456)
T 4atq_A 110 VAVTEQLNRLTPGDHA-KRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTM-ALTAKAMPYKTNFGPFAP 187 (456)
T ss_dssp HHHHHHHHHHSSCSSC-EEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHH-HHCCCCTTTTTTSCSCCS
T ss_pred HHHHHHHHHhCCCCCC-cEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCcccccc-ccccCccccccCCCCccc
Confidence 4667778888754322 35899999999988776543222333 455 5667776333221 1100 0 012
Q ss_pred EEEEEeccCCC-----CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeC
Q 037063 250 RVSSAEFAWPN-----LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDA 319 (588)
Q Consensus 250 ~v~~v~~~~~~-----~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDa 319 (588)
.+..+|...+. ...+.+.+++.++.-......++...|++.-+....|.+.| ++.| ++|+++|+++|+|.
T Consensus 188 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DE 267 (456)
T 4atq_A 188 EVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADE 267 (456)
T ss_dssp SEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred cceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecc
Confidence 45556553111 11123334443331001112246788888888888898887 7778 99999999999999
Q ss_pred CCcC-C-----CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccc
Q 037063 320 TALG-S-----KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELET 393 (588)
Q Consensus 320 a~~~-~-----~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~ 393 (588)
+|.. + .-...+++ .||+++++ |.+|. ..-+|++++++++++.+.+...+ ++
T Consensus 268 V~tG~GRtG~~~a~e~~gv---~PDivt~g--K~lgg-g~P~~av~~~~~i~~~~~~~~~~--~T--------------- 324 (456)
T 4atq_A 268 VQSGFCRTGEWFAVDHEGV---VPDIITMA--KGIAG-GLPLSAITGRADLLDAVHPGGLG--GT--------------- 324 (456)
T ss_dssp TTTTTTTTSSSSGGGGTTC---CCSEEEEC--GGGGT-TSSCEEEEEEHHHHTTSCTTSSC--CS---------------
T ss_pred cccccCCccccccccccCC---CCchhhhh--hcccC-cCCceeeEecHHHHhcccccCCC--CC---------------
Confidence 9765 2 11233443 49998776 74442 23479999999988777654332 11
Q ss_pred ccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHccc--CCCCCCCCCeEEEeCCCCCCC
Q 037063 394 LDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLH--HPHSETGIPLVRIYGPKVMFD 471 (588)
Q Consensus 394 ~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~--h~~~~~g~~~v~i~~p~~~~~ 471 (588)
| .| |..+ .++..+.|+.+++ +.+.++.+.+.+++.++|++|. ++.. +.+.|.=+ ..
T Consensus 325 -----f--~g--npla---~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~--~~~~v~~V-----RG 382 (456)
T 4atq_A 325 -----Y--GG--NPVA---CAAALAAIDTMEQ---HDLNGRARHIEELALGKLRELAAELSAG--GGSVVGDI-----RG 382 (456)
T ss_dssp -----S--SS--CHHH---HHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCC-------CEEEE-----EE
T ss_pred -----C--CC--ChHH---HHhhHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHhcccc--cCCceEEe-----ee
Confidence 0 11 1111 2444466676665 4466777777777777776652 1100 01222100 12
Q ss_pred cccEEEEEeecCCCCCcCH---HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCC
Q 037063 472 RGPSLAFNVFDWNGTRIDP---ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGC 548 (588)
Q Consensus 472 rg~iv~f~~~~~~g~~i~~---~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~ 548 (588)
+|-++.+.+.+.....-+. ..+.+.+.++|+.++... ....+||+.+.+
T Consensus 383 ~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g----------------------------~~~~~irl~PpL 434 (456)
T 4atq_A 383 RGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTCG----------------------------TYGNVIRLLPPL 434 (456)
T ss_dssp ETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEEC----------------------------TTSCEEEECCCT
T ss_pred cceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecC----------------------------CCCCEEEEECCC
Confidence 4678888775432111122 345666677899876420 001289999999
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 037063 549 LTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 549 ~~t~eDv~~li~~l~~~l~~ 568 (588)
..|.|||+++++.|.+.|++
T Consensus 435 ~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 435 VISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999998875
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.5e-10 Score=121.37 Aligned_cols=354 Identities=13% Similarity=0.107 Sum_probs=205.9
Q ss_pred CCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 109 LNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 109 ~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
.++.-|||..+. |--.+.+.+++.+.+.+-...+. || + ...+...
T Consensus 64 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~-------------~~---------------~-~~~~~~~ 114 (473)
T 4e3q_A 64 VNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHA-------------FF---------------G-RMSDQTV 114 (473)
T ss_dssp TTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCC-------------CT---------------T-EEEHHHH
T ss_pred CCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccc-------------cc---------------c-ccCHHHH
Confidence 368889997654 45567788887665543111000 01 0 0134445
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC------CCCCCe-EE-EcCCCchhHHHHHHHHH-----HhcC-
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP------FYSNPR-LL-TVYDHENEAAALMIESS-----KKRG- 248 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~------~~~gd~-ll-~~~e~~s~~~~~~~~~a-----~~~G- 248 (588)
++-++|.++...+-+ .|.|+.++|+|+..+++... -+++.. |+ ....||......+ ... +..+
T Consensus 115 ~lAe~L~~~~p~~~~--~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~-s~tg~~~~~~~~~ 191 (473)
T 4e3q_A 115 MLSEKLVEVSPFDSG--RVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSA-SMTGKPYNSVFGL 191 (473)
T ss_dssp HHHHHHHHHSSCSSC--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHH-HHSCCGGGGGGTC
T ss_pred HHHHHHHhhCCCCcc--EEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccc-cccccccccccCC
Confidence 677888888765433 49999999999887766421 124443 55 5566776333222 110 0011
Q ss_pred --CEEEEEeccC-----CCCcc-------CHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHH
Q 037063 249 --ARVSSAEFAW-----PNLRI-------HSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAA 309 (588)
Q Consensus 249 --~~v~~v~~~~-----~~~~i-------~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~ 309 (588)
..+..++... ..+.. ..+++++.|. +...++...|++.-+...-|.+.| ++.| ++|+
T Consensus 192 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~----~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~ 267 (473)
T 4e3q_A 192 PLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQ----REGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILR 267 (473)
T ss_dssp SCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHH----HHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH
T ss_pred CCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHH----hhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhc
Confidence 1223333210 01111 1234555554 222356788999988888899887 6678 9999
Q ss_pred HcCcEEEEeCCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeec
Q 037063 310 EKGWHVLLDATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEP 383 (588)
Q Consensus 310 ~~g~~vvvDaa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~ 383 (588)
++|+++|+|.++.. +. -...++ ..||++++ -|.+|.+-.-+|++++++++.+.+....... +
T Consensus 268 ~~gilLI~DEV~tGfGRtG~~fa~e~~g---v~PDi~t~--~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~-~------ 335 (473)
T 4e3q_A 268 KYDIPVISDEVICGFGRTGNTWGCVTYD---FTPDAIIS--SKNLTAGFFPMGAVILGPELSKRLETAIEAI-E------ 335 (473)
T ss_dssp HTTCCEEEECTTTSSSTTSSSCHHHHTT---CCCSEEEE--CGGGGTTSSCCEEEEECHHHHHHHHHHHHHH-S------
T ss_pred ccceEEeccCccccCCcccchhHHHhcC---CCCChHHh--cccccCCCCCcccccccHHHHHHhccccccc-c------
Confidence 99999999999765 21 012233 34998865 4855421123799999999877653211000 0
Q ss_pred CCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEE
Q 037063 384 SFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRI 463 (588)
Q Consensus 384 ~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i 463 (588)
.|...+|.+-..+ ..++..+.|+.+++ +.+.++++.+.++|.++|++|.. .+.|.-
T Consensus 336 --------------~~~hg~T~~Gnpl-a~Aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~------~~~v~~ 391 (473)
T 4e3q_A 336 --------------EFPHGFTASGHPV-GCAIALKAIDVVMN---EGLAENVRRLAPRFEERLKHIAE------RPNIGE 391 (473)
T ss_dssp --------------CCCCCCTTTTCHH-HHHHHHHHHHHHHH---SSHHHHHHHHHHHHHHHHHHHTT------STTEEE
T ss_pred --------------ccccCCCCCCCcc-hhhhhhhhhhhhcc---ccHHHHHHHHHHHHHHHHHHHhc------CCCeeE
Confidence 0001222222222 12334456666655 55677888888899888888731 233321
Q ss_pred eCCCCCCCcccEEEEEeecCCCC--CcC-----HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCc
Q 037063 464 YGPKVMFDRGPSLAFNVFDWNGT--RID-----PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETR 536 (588)
Q Consensus 464 ~~p~~~~~rg~iv~f~~~~~~g~--~i~-----~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~ 536 (588)
+ ..+|-++.+.+...... ..+ ...+.+.+.++|+.+++.
T Consensus 392 v-----RG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------------------------- 437 (473)
T 4e3q_A 392 Y-----RGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL----------------------------- 437 (473)
T ss_dssp E-----EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE-----------------------------
T ss_pred E-----eecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEec-----------------------------
Confidence 1 12456777776432211 111 345677777889987642
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHHHHHhhhhhh
Q 037063 537 SGVSVVTAALGCLTNFEDTYRLWAFVSRFLDADF 570 (588)
Q Consensus 537 ~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~~ 570 (588)
| ..||+++.+..|.+|||++++.+.+.|++-+
T Consensus 438 -g-~~i~l~PPL~it~~eid~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 438 -G-QSVVLCPPFILTEAQMDEMFDKLEKALDKVF 469 (473)
T ss_dssp -T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -C-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 1899999999999999999999999988754
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-07 Score=107.10 Aligned_cols=227 Identities=14% Similarity=0.101 Sum_probs=130.2
Q ss_pred HHHHHHHhhhccccCCCcceEEEEeCC-CCCCCccCC----HHHH-HHHHHcCcEEEEeCCCcC-CC---C--CCCCCCC
Q 037063 266 GKLMKKIVGKRKKKKKKKRGLFVFPLQ-SKVTGARYS----YMWM-SVAAEKGWHVLLDATALG-SK---D--MDTLGLS 333 (588)
Q Consensus 266 e~l~~~i~~~~~~~~~~~t~Lv~~~~~-sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~~-~~---d--~~~l~l~ 333 (588)
+.|++.|.+.......+++.+|++.-+ ++..|.+.| +++| ++|+++|+++|+|.++.. +. . ...++
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~g-- 654 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLG-- 654 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHS--
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcC--
Confidence 456666641000012356888988886 888898886 7788 999999999999998653 21 0 11223
Q ss_pred CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhH
Q 037063 334 LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSK 413 (588)
Q Consensus 334 ~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~ 413 (588)
..||++ ++.|.+|.+-.-+|++++++++++.+.+.... + .|...+|..-..+ ..
T Consensus 655 -v~PDii--tlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~--~--------------------~~~hg~T~~g~Pl-a~ 708 (831)
T 4a0g_A 655 -CKPDIA--CFAKLLTGGMVPLAVTLATDAVFDSFSGDSKL--K--------------------ALLHGHSYSAHAM-GC 708 (831)
T ss_dssp -SCCSEE--EECGGGGTTSSCCEEEEECHHHHHTTCSSCGG--G--------------------SCCCCCTTTTCHH-HH
T ss_pred -CCCcEE--EEecccccCccCcEEEEECHHHHHHHhccccc--c--------------------cceeecCCcccHH-HH
Confidence 248976 47797652102369999999988766532100 0 0101122222222 12
Q ss_pred HHHHHHHHHHHHhCHHHHHHHH----HHH----HHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCC
Q 037063 414 LVECKGLDHADALGLILISNRA----RYL----INWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNG 485 (588)
Q Consensus 414 ~al~~aL~~l~~~G~~~i~~r~----~~L----~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g 485 (588)
++..++|+.+++.+ +.+++ ..+ .+.+.+.+.+. +.+.-+. ..|.++.+.+.+...
T Consensus 709 Aaala~L~~i~~~~---l~~~~~~~~~~l~~~l~~~l~~~l~~~---------~~v~~vr-----g~Gl~~~iel~~~~~ 771 (831)
T 4a0g_A 709 ATAAKAIQWFKDPE---TNHNITSQGKTLRELWDEELVQQISSH---------SAVQRVV-----VIGTLFALELKADAS 771 (831)
T ss_dssp HHHHHHHHHHHCTT---TCTTBCTTSSBBCCCSCHHHHHHHHHS---------TTEEEEE-----EETTEEEEEEC----
T ss_pred HHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhC---------CCceeEe-----ecccEEEEEEecCcc
Confidence 44456777665432 22222 222 22344455542 3332221 246777877753211
Q ss_pred -CC---cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHH
Q 037063 486 -TR---IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAF 561 (588)
Q Consensus 486 -~~---i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~ 561 (588)
.. .....+.+.+.++||.++++ . ..||+++.+..|.+||+++++.
T Consensus 772 ~~~~~~~~a~~~~~~l~e~Gv~v~p~-----------------------------g--~~lrl~pp~~~t~e~id~~~~~ 820 (831)
T 4a0g_A 772 NSGYASLYAKSLLIMLREDGIFTRPL-----------------------------G--NVIYLMCGPCTSPEICRRLLTK 820 (831)
T ss_dssp -----CHHHHHHHHHHHHTTEECCCB-----------------------------T--TEEEEECCTTCCHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHCCcEEEec-----------------------------C--CEEEEECCCCCCHHHHHHHHHH
Confidence 00 11334667777899998753 1 1899999999999999999999
Q ss_pred HHHhhhh
Q 037063 562 VSRFLDA 568 (588)
Q Consensus 562 l~~~l~~ 568 (588)
|.+.+++
T Consensus 821 l~~~l~~ 827 (831)
T 4a0g_A 821 LYKRLGE 827 (831)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 588 | |||
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 100.0 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 100.0 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 100.0 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 100.0 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 100.0 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 100.0 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 100.0 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 100.0 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.98 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.97 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.95 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.95 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.93 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.93 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.92 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.92 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.88 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.87 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.86 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.86 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.86 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.85 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.85 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.85 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.85 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.85 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.83 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.82 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.82 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.82 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.82 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.81 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.81 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.81 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.81 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.81 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.8 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.8 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.8 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.8 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.79 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.79 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.77 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.77 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.77 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.76 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.76 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.76 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.75 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.75 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.75 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.74 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.73 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.73 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.72 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.72 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.71 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.71 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.71 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.69 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.68 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.67 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.66 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.65 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.65 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.63 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.6 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.57 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.55 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.46 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.44 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.44 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.43 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.43 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.42 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.4 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.38 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.37 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.34 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.23 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.21 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.18 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.17 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.09 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.02 |
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.1e-54 Score=455.32 Aligned_cols=390 Identities=19% Similarity=0.248 Sum_probs=321.1
Q ss_pred hHHHHHhhhccCCCC----CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccc
Q 037063 95 QADRIRAQDYFHLSL----NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSW 170 (588)
Q Consensus 95 ~~~~iR~~~f~~l~~----~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~ 170 (588)
+++++|+ +||.|+. ++.+||||+++|+.|+.|++++.+++. ..++||+++. +.
T Consensus 3 d~~~vR~-~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~-~~~~n~~~~~--------------------~~- 59 (405)
T d1jf9a_ 3 SVDKVRA-DFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYR-HGYAAVHRGI--------------------HT- 59 (405)
T ss_dssp CHHHHHH-TCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHHHHH-HTCCCCSSCS--------------------SH-
T ss_pred CHHHHHH-hChhcccCcCCCCeEEEeCccccCCCHHHHHHHHHHHH-hccCCCccch--------------------hH-
Confidence 7999998 7999942 135999999999999999999876664 3577875321 10
Q ss_pred cccCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHh---CCCCCCCeE-EEcCCCchhHHHHHHHHHHh
Q 037063 171 LQYGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAES---YPFYSNPRL-LTVYDHENEAAALMIESSKK 246 (588)
Q Consensus 171 ~~~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s---~~~~~gd~l-l~~~e~~s~~~~~~~~~a~~ 246 (588)
.+.+..+.++++|+.||+++|+++. ++|+||+|+|+|++.++.+ ..+++|++| ++..+|+++..+| ..++++
T Consensus 60 --~~~~~~~~~e~~R~~ia~~l~~~~~-~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~-~~~a~~ 135 (405)
T d1jf9a_ 60 --LSAQATEKMENVRKRASLFINARSA-EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPW-QMLCAR 135 (405)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTCSCG-GGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHH-HHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHcCCCCc-ccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHH-HHHHHH
Confidence 1223367899999999999997643 3599999999999999887 447899995 5789999988887 788899
Q ss_pred cCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC
Q 037063 247 RGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK 325 (588)
Q Consensus 247 ~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~ 325 (588)
.|++|+.+|++ +++.++.++++++++ ++|+||++++++|.||.++|+++| ++||++|++++||++|++|
T Consensus 136 ~g~~v~~~~~~-~~g~~~~~~~~~~i~--------~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g- 205 (405)
T d1jf9a_ 136 VGAELRVIPLN-PDGTLQLETLPTLFD--------EKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVM- 205 (405)
T ss_dssp HTCEEEEECBC-TTSCBCGGGHHHHCC--------TTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTT-
T ss_pred cCcEEEEECCC-CCCcCCHHHHHHhcc--------CCcEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceecc-
Confidence 99999999998 789999999999988 899999999999999999999999 9999999999999999999
Q ss_pred CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 326 DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 326 d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
..++++..+++||+++|+|||+| |.|+|+||++++.++.+.+...++ +........ +...+.. ...+| |.||+
T Consensus 206 -~~~id~~~~~~D~~~~s~hK~~G--p~G~g~l~v~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~-~~~r~-e~GT~ 278 (405)
T d1jf9a_ 206 -HHPVDVQALDCDFYVFSGHKLYG--PTGIGILYVKEALLQEMPPWEGGG-SMIATVSLS-EGTTWTK-APWRF-EAGTP 278 (405)
T ss_dssp -TSCCCHHHHTCSEEEEEGGGTTS--CSSCEEEEECHHHHTTCCCSSCSS-SSEEECCTT-TCCEECC-TTGGG-CCSSC
T ss_pred -ccccchhhcCCceeecccccccc--CCCceeeeechhhhcccCcccccc-cccCccccc-ccccccc-chhhh-cCCCC
Confidence 56677777779999999999988 999999999999988887766553 222222111 1111111 12378 89999
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCC
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNG 485 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g 485 (588)
++.++ +++..|++++.++|++++.+|...|.+++.+.+..+ +.+.+++|. .++++++|++++
T Consensus 279 ~~~~~---~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~---------~~~~~~~~~---~r~~ivsf~~~~--- 340 (405)
T d1jf9a_ 279 NTGGI---IGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESV---------PDLTLYGPQ---NRLGVIAFNLGK--- 340 (405)
T ss_dssp CHHHH---HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS---------TTEEEESCT---TCCSEEEEEETT---
T ss_pred cHHHH---HHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcC---------CcccccCCc---CcCcEEEEEcCC---
Confidence 99987 889999999999999999999999999999999874 678888874 578999999987
Q ss_pred CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCc-cEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 486 TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGV-SVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 486 ~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~-~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
+++..+...|+++||.++.|++|+.. +... .+. +.||||+|+|||.|||++|+++|++
T Consensus 341 --~~~~~~~~~L~~~gI~v~~G~~c~~~------------~~~~-------~~~~g~iRiS~~~ynt~eDid~l~~~l~~ 399 (405)
T d1jf9a_ 341 --HHAYDVGSFLDNYGIAVRTGHHCAMP------------LMAY-------YNVPAMCRASLAMYNTHEEVDRLVTGLQR 399 (405)
T ss_dssp --CCHHHHHHHHHHTTEECEEECTTCHH------------HHHH-------TTCSCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHCCcEEEccchhhhh------------HHHh-------cCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56888899999999999999999632 1111 222 2899999999999999999999998
Q ss_pred hhh
Q 037063 565 FLD 567 (588)
Q Consensus 565 ~l~ 567 (588)
+++
T Consensus 400 i~r 402 (405)
T d1jf9a_ 400 IHR 402 (405)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=1e-51 Score=439.86 Aligned_cols=391 Identities=18% Similarity=0.218 Sum_probs=317.9
Q ss_pred HHHHhhhccCCCCC----CeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 037063 97 DRIRAQDYFHLSLN----NYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQ 172 (588)
Q Consensus 97 ~~iR~~~f~~l~~~----~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~ 172 (588)
..||+ +||.|+.. +.|||||+++|++|+.|++++.+++. ..++||||.+ + .
T Consensus 5 a~iR~-~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~-~~~~n~~s~~--------------------~---~ 59 (408)
T d1t3ia_ 5 ATVRQ-DFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMHYYE-NDNANVHRGA--------------------H---Q 59 (408)
T ss_dssp HHHGG-GCGGGSCEETTEECEECBTTTCCCCCHHHHHHHHHHHH-HTCCCC--CC--------------------S---H
T ss_pred HHHHH-hCcccccccCCCCeEEeeCccccCCCHHHHHHHHHHHH-hcCCCCCchh--------------------h---H
Confidence 36897 69999421 24999999999999999999877664 3577875421 1 1
Q ss_pred cCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhC---CCCCCCeEE-EcCCCchhHHHHHHHHHHhcC
Q 037063 173 YGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY---PFYSNPRLL-TVYDHENEAAALMIESSKKRG 248 (588)
Q Consensus 173 ~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~---~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G 248 (588)
.|.+..++++++|+.+++++|+++++ .|+||+|+|+++++++.++ .+++|++|+ +..+|+++...| ...+++.|
T Consensus 60 ~~~~~~~~~e~aR~~ia~llga~~~~-~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~-~~~~~~~g 137 (408)
T d1t3ia_ 60 LSVRATDAYEAVRNKVAKFINARSPR-EIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPW-QMVAAKTG 137 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCGG-GEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHH-HHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcc-cEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhh-hhhhhccC
Confidence 12334689999999999999997533 4999999999999998873 578999955 788999977777 67788899
Q ss_pred CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCC
Q 037063 249 ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDM 327 (588)
Q Consensus 249 ~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~ 327 (588)
++++.+|.+ .++.++.++++++++ ++|+||++++++|.||.++|+++| ++||++|++++||++|++| .
T Consensus 138 ~~v~~~~~~-~~~~~~~~~l~~~~~--------~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g--~ 206 (408)
T d1t3ia_ 138 AVLKFVQLD-EQESFDLEHFKTLLS--------EKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAP--H 206 (408)
T ss_dssp CEEEEECBC-TTSSBCHHHHHHHCC--------TTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTT--T
T ss_pred ceEeeeecc-ccccccHHHhhhccC--------CCceEEEEecccccccccCcHHHHhhhhhccCceeeeccceecc--c
Confidence 999999987 678889999999988 899999999999999999999999 9999999999999999999 5
Q ss_pred CCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCc
Q 037063 328 DTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407 (588)
Q Consensus 328 ~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~ 407 (588)
.++|+..+++||+++|+|||+| |.|+|+||++++....+++...|| ........ . ...+.. ...+| |.||+++
T Consensus 207 ~~id~~~~~~D~~~~s~hK~~g--p~G~g~l~v~~~~~~~~~p~~~g~-~~~~~~~~-~-~~~~~~-~~~r~-e~Gt~~~ 279 (408)
T d1t3ia_ 207 YPLDVQLIDCDWLVASGHKMCA--PTGIGFLYGKEEILEAMPPFFGGG-EMIAEVFF-D-HFTTGE-LPHKF-EAGTPAI 279 (408)
T ss_dssp SCCCHHHHTCSEEEEEGGGTTS--CTTCEEEEECHHHHHHSCCCSCST-TSEEEECS-S-CEEECC-TTGGG-CCSSCCH
T ss_pred ccccccccCCceEEeccccccC--CCCccccccchhhhhcCCceecCC-cccccccc-c-ccccCC-chhhh-cCCcHHH
Confidence 6777777779999999999988 899999999999988777777663 22222111 1 111111 12378 8999999
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCC-CCcccEEEEEeecCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVM-FDRGPSLAFNVFDWNGT 486 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~-~~rg~iv~f~~~~~~g~ 486 (588)
.++ +++..|++++.++|+++|.+|...|.+++.+.+.++ +.++++++... ..++++++|++.+
T Consensus 280 ~~~---~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~iv~f~~~~---- 343 (408)
T d1t3ia_ 280 AEA---IALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQI---------PQLRLYGPNPKHGDRAALASFNVAG---- 343 (408)
T ss_dssp HHH---HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC---------TTEEEESCCGGGSCBCSEEEEEETT----
T ss_pred HHH---HHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccC---------ccccccCCCccccCcceEEEEEeCC----
Confidence 986 789999999999999999999999999999999884 78999987643 3568999999987
Q ss_pred CcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 487 RIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 487 ~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
++++.+...|+++||.+++|++|+.. +.... ...+.||||+|+|||++|||+++++|++.+
T Consensus 344 -~~~~~v~~~L~~~gI~v~~G~~c~~~------------~~~~~------~~~g~vRiS~~~ynt~~did~li~~L~~~~ 404 (408)
T d1t3ia_ 344 -LHASDVATMVDQDGIAIRSGHHCTQP------------LHRLF------DASGSARASLYFYNTKEEIDLFLQSLQATI 404 (408)
T ss_dssp -BCHHHHHHHHHTTTEECBCSCTTCHH------------HHHHT------TCCCCEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHhhCCcEEecCcccccH------------HHHhh------cCCccEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 67888999999999999999999631 11110 111289999999999999999999999877
Q ss_pred h
Q 037063 567 D 567 (588)
Q Consensus 567 ~ 567 (588)
+
T Consensus 405 ~ 405 (408)
T d1t3ia_ 405 R 405 (408)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=3.3e-45 Score=385.13 Aligned_cols=371 Identities=15% Similarity=0.140 Sum_probs=288.7
Q ss_pred hccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHH
Q 037063 103 DYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELES 182 (588)
Q Consensus 103 ~f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~ 182 (588)
|||.| ++.+||||+++|+.|..|++++.+.+.. ...+++.. ... +....++++
T Consensus 1 ~fp~l--~~~~yld~~~~~~~p~~v~ea~~~~~~~-~~~~~~~~-------------------~~~-----~~~~~~~~~ 53 (381)
T d1elua_ 1 QFPGL--ANKTYFNFGGQGILPTVALEAITAMYGY-LQENGPFS-------------------IAA-----NQHIQQLIA 53 (381)
T ss_dssp CCGGG--TTSEECCTTTCCCCCHHHHHHHHHHHHH-HHHHCSSS-------------------HHH-----HHHHHHHHH
T ss_pred CCCCC--CCCEEeeCCcccCCCHHHHHHHHHHHHH-hhcCCCcc-------------------chh-----hHHHHHHHH
Confidence 69999 7899999999999999999998766532 22232100 000 111257788
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCC
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNL 261 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~ 261 (588)
++|+.+|+++|+++++ |+||+|+|+|+++++.++.+++|++|+ +..+|+++...| ..++++.|++++.+|.+....
T Consensus 54 ~~r~~la~~~~~~~~~--i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~-~~~~~~~g~~~~~v~~~~~~~ 130 (381)
T d1elua_ 54 QLRQALAETFNVDPNT--ITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIV-QAIAARFGITYRFFPVAATLN 130 (381)
T ss_dssp HHHHHHHHHTTSCGGG--EEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHH-HHHHHHHCCEEEEECCGGGSS
T ss_pred HHHHHHHHHhCCCccc--EEEECChHHHhhhcchhhhhcCCceEEEeccccceeeecc-ccccccccccccccccccccc
Confidence 9999999999998776 999999999999999999999999955 678888755544 667788899999998762211
Q ss_pred ccC-HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHc----CcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 262 RIH-SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEK----GWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 262 ~i~-~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~----g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
..+ .+.++++++ ++|++|++++++|+||.++|+++| ++|+++ |+++++|+++.++ ..++++..+
T Consensus 131 ~~~~~~~l~~~i~--------~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g--~~~~~~~~~ 200 (381)
T d1elua_ 131 QGDAAAVLANHLG--------PKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAG--SLPLDFSRL 200 (381)
T ss_dssp SSCHHHHHHTTCC--------TTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBT--TBCCCTTTS
T ss_pred cchHHHHHHhhhc--------ccccccccccccccccccchhhHHHHHHhhcccccccccccccccccc--ccccccccc
Confidence 111 334444444 899999999999999999999999 999984 6999999999998 566777777
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHH
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLV 415 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~a 415 (588)
++|++++|+||+++. |.|+|+|+++++..+.+.+...++ +....... .+...+.... .+| +.||++...+ .+
T Consensus 201 ~~D~~~~s~~K~~~~-p~G~g~l~~~~~~~~~~~p~~~~~-~~~~~~~~-~~~~~~~~~~-~~~-~~gt~~~~~~---~~ 272 (381)
T d1elua_ 201 EVDYYAFTGHKWFAG-PAGVGGLYIHGDCLGEINPTYVGW-RSITYGAK-GEPTGWAEGG-KRF-EVATSAYPQY---AG 272 (381)
T ss_dssp CCSEEEEESSSTTCC-CTTCEEEEECTTTGGGCCCCSCCT-TTEEECTT-SCEEEECSGG-GGG-CCSCCCHHHH---HH
T ss_pred ccccccccccccccc-cchhhHHHhhHHHHHhcCcccccc-cccccccc-cccccccccc-ccc-ccccccchhh---hh
Confidence 799999999998875 899999999999999998887664 22221111 1111111111 256 8899999886 78
Q ss_pred HHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHH
Q 037063 416 ECKGLDHADALGL-ILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQ 494 (588)
Q Consensus 416 l~~aL~~l~~~G~-~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~ 494 (588)
+.+|++.+.+.|. +.+.++...+++++.++|+++ ++++++++.. .++++++|++.+. .+.+.+.
T Consensus 273 ~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~~~~--~~~~~vsf~~~~~----~~~~~i~ 337 (381)
T d1elua_ 273 LLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQL---------PHVHCLATSA--PQAGLVSFTVDSP----LGHRAIV 337 (381)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS---------TTEEESCSSC--CSSSEEEEEECSS----SCHHHHH
T ss_pred hhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcC---------CCeEecCCCC--ccccEEEEEcCCC----CCHHHHH
Confidence 8899999999884 556789999999999999995 7899998754 5789999998763 4567888
Q ss_pred HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 495 KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 495 ~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
+.|+++||.++.. .+.++||+|+|+|||.|||++|+++|++|
T Consensus 338 ~~L~~~gi~v~~~-----------------------------~~~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 338 QKLEEQRIYLRTI-----------------------------ADPDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp HHHHHTTEECEEE-----------------------------TTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred HHHHhCCcEEEec-----------------------------CCCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 9999999988642 11128999999999999999999999876
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-43 Score=370.68 Aligned_cols=380 Identities=16% Similarity=0.135 Sum_probs=285.5
Q ss_pred eeeecCCCCCCCCHHHHHHhhhhcc-cCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHH
Q 037063 112 YVCFDYIGHGLFSYSQMHSCSSNVH-SSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMD 190 (588)
Q Consensus 112 ~vyLD~a~~gl~~~~~~~~~~~~~~-~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~ 190 (588)
.||||++++||.|+.|++++.+++. ...++||||.. +. .+....+.++++|+.||+
T Consensus 3 ~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~--------------------~~---~~~~~~~~~~~~R~~iA~ 59 (391)
T d1p3wa_ 3 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRS--------------------HR---FGWQAEEAVDIARNQIAD 59 (391)
T ss_dssp SEECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTT--------------------SH---HHHHHHHHHHHHHHHHHH
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhccccCCCchhh--------------------hH---HHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999987764 45677885421 10 122346888999999999
Q ss_pred HhCCCCCCceEEEecCHHHHHHHHHHhCC---CCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHH
Q 037063 191 FMNISEDDYTLVFTANQSSAFKLLAESYP---FYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSG 266 (588)
Q Consensus 191 ~lga~~~e~~vvft~g~T~al~lv~~s~~---~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e 266 (588)
++|+++++ |+||+|+|++++.++.++. +++||+|+ +..+|++ ...+ .+.++..|++|+.++.+ .++.+|++
T Consensus 60 ~lg~~~~~--I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s-~~~~-~~~~~~~G~~v~~v~~~-~~~~~d~~ 134 (391)
T d1p3wa_ 60 LVGADPRE--IVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKA-VLDT-CRQLEREGFEVTYLAPQ-RNGIIDLK 134 (391)
T ss_dssp HHTCCGGG--EEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHH-HHHH-HHHHHHTTCEEEEECCC-TTSCCCHH
T ss_pred HcCCCCCc--EEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccch-HHHH-HHHHHHcCCEEEEeCCC-CCCeEcHH
Confidence 99999876 9999999999999988753 58999965 5667766 4444 34567789999999998 77889999
Q ss_pred HHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccC
Q 037063 267 KLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFY 345 (588)
Q Consensus 267 ~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~ 345 (588)
+++++|+ ++|++|++++++|+||.++|+++| ++||++|+++++|++|..+ ..++|+....+|++++|+|
T Consensus 135 ~~~~~i~--------~~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g--~~~~d~~~~~~D~~~~s~~ 204 (391)
T d1p3wa_ 135 ELEAAMR--------DDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVG--KLPIDLSQLKVDLMSFSGH 204 (391)
T ss_dssp HHHHHCC--------TTEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBT--TBCCCTTTSCCSEEEEEST
T ss_pred HHHHhCC--------CCcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccC--Cccccchhccccccccccc
Confidence 9999998 899999999999999999999999 9999999999999999998 5667777777999999999
Q ss_pred ccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHH
Q 037063 346 KIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADA 425 (588)
Q Consensus 346 K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~ 425 (588)
|++| |.|+|+++++++.+..+.+...|| .. . ..+ +.|+.++.+. .++..+++...+
T Consensus 205 k~~g--~~g~g~~~~~~~~~~~~~~~~~gg--~~-------------~---~~~-~~~~~~~~~~---~~l~~~~~~~~~ 260 (391)
T d1p3wa_ 205 KIYG--PKGIGALYVRRKPRVRIEAQMHGG--GH-------------E---RGM-RSGTLPVHQI---VGMGEAYRIAKE 260 (391)
T ss_dssp TTTS--CSSCEEEEECBTTBCCCCCSSCSS--CT-------------T---TTT-SCSCCCHHHH---HHHHHHHHHHHH
T ss_pred cccC--CCceEEEEEecchhcccCCcccCC--cc-------------c---cCc-ccCcchhhhh---hhhhhhhhHHHH
Confidence 9998 889999999999888888777663 10 0 023 5677777664 566667776665
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEec
Q 037063 426 LGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLS 505 (588)
Q Consensus 426 ~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~ 505 (588)
. .....+|++.+..++.++|.++ +...+..... .....+++|.+.. +....+...+ .+|.++
T Consensus 261 ~-~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~l--~~i~v~ 322 (391)
T d1p3wa_ 261 E-MATEMERLRGLRNRLWNGIKDI---------EEVYLNGDLE-HGAPNILNVSFNY-----VEGESLIMAL--KDLAVS 322 (391)
T ss_dssp H-HHHHHHHHHHHHHHHHHTTTTS---------TTEEECSCTT-TSCTTEEEEEETT-----SCHHHHHHHT--TTEECB
T ss_pred H-hhHHHHHHHHHHHHHHHHHHhh---------cCeeeccccc-ccCceEEEEEeCC-----CChHHHHHHh--CCCEEE
Confidence 4 4556788889999999988875 4565554332 2345677787766 4455555444 589999
Q ss_pred cccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhhhcccccccc
Q 037063 506 CGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDADFVEKERWRY 578 (588)
Q Consensus 506 ~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~~~~~~~~~~ 578 (588)
.|++|.++......- +... +.. .....+.||||+|+|||.|||++++++|++++++..-....|+.
T Consensus 323 ~G~~c~~~~~~~~~~-----l~~~-g~~-~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~~~~~~~~ 388 (391)
T d1p3wa_ 323 SGSACTSASLEPSYV-----LRAL-GLN-DELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEM 388 (391)
T ss_dssp CCCC------CCCHH-----HHHH-TCC-HHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred ccccccCCccchhHH-----HHHc-CCC-ccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhChHHHh
Confidence 999998654332211 1110 000 00001289999999999999999999999999886555556643
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.2e-43 Score=367.19 Aligned_cols=367 Identities=15% Similarity=0.118 Sum_probs=275.0
Q ss_pred eeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHH
Q 037063 112 YVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDF 191 (588)
Q Consensus 112 ~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~ 191 (588)
+||||++|+++.|+.|++++.+++. ..++||++. +. .+....+.++++|++++++
T Consensus 2 ~iyld~a~~~~~p~~v~ea~~~~~~-~~~~np~~~-------------------~~-----~~~~~~~~~~~aR~~ia~l 56 (376)
T d1eg5a_ 2 RVYFDNNATTRVDDRVLEEMIVFYR-EKYGNPNSA-------------------HG-----MGIEANLHMEKAREKVAKV 56 (376)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHH-TCCCCTTCS-------------------SH-----HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECcccccCCHHHHHHHHHHHH-HcCCCCccc-------------------cH-----HHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999977765 457888531 11 1223477889999999999
Q ss_pred hCCCCCCceEEEecCHHHHHHHHHHhC---CCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHH
Q 037063 192 MNISEDDYTLVFTANQSSAFKLLAESY---PFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKL 268 (588)
Q Consensus 192 lga~~~e~~vvft~g~T~al~lv~~s~---~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l 268 (588)
+|+++++ |+|++|+|+++++++.++ .+.+|+.+++..+++++...+ .+.++..|++|+.+|++ +++.+|.+++
T Consensus 57 ~~~~~~~--i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~~~~~g~~v~~vp~~-~~~~id~~~l 132 (376)
T d1eg5a_ 57 LGVSPSE--IFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLET-MKYLSMKGFKVKYVPVD-SRGVVKLEEL 132 (376)
T ss_dssp HTSCGGG--EEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHH-HHHHHHTTCEEEECCBC-TTSCBCHHHH
T ss_pred cCCCCCc--EEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHH-HHHHHhcCCEEEEEcCC-CCCeECHHHH
Confidence 9998876 999999999999998653 367788888777777756655 46678889999999998 7889999999
Q ss_pred HHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH--cCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccC
Q 037063 269 MKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE--KGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFY 345 (588)
Q Consensus 269 ~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~--~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~ 345 (588)
+++|+ ++|+||+++|++|.||.+.|+++| ++++. .|+.++||++|+++ ..++++..+++||+++|+|
T Consensus 133 ~~~i~--------~~t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g--~~~~d~~~~~~D~~~~s~~ 202 (376)
T d1eg5a_ 133 EKLVD--------EDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIG--KIPFSLEKLEVDYASFSAH 202 (376)
T ss_dssp HHHCC--------TTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTT--TSCCCCTTTCCSEEEEEGG
T ss_pred HHhcC--------CCceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeeccc--cccccccccCccceecccc
Confidence 99998 899999999999999999999999 77654 59999999999998 5677777788999999999
Q ss_pred ccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHH
Q 037063 346 KIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADA 425 (588)
Q Consensus 346 K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~ 425 (588)
||+| |.|.|++|++++. .++|...++ +.. ..+ +.|+.+..+. .....+.+....
T Consensus 203 K~~g--p~G~~~l~~~~~~--~~~p~~~g~-~~~-----------------~~~-~~~~~~~~~~---~~~~~~~~~~~~ 256 (376)
T d1eg5a_ 203 KFHG--PKGVGITYIRKGV--PIRPLIHGG-GQE-----------------RGL-RSGTQNVPGI---VGAARAMEIAVE 256 (376)
T ss_dssp GGTS--CTTCEEEEECTTS--CCCCSBCSS-CTT-----------------TTT-BCSCCCHHHH---HHHHHHHHHHHH
T ss_pred eeec--CCCceeEEeccCc--ccCCcccCC-CCc-----------------ccc-cCCcccchhh---hhHHHHhhcccc
Confidence 9988 8999999999874 466666553 210 022 5667776664 334444444433
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEec
Q 037063 426 LGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLS 505 (588)
Q Consensus 426 ~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~ 505 (588)
+......+...+..++.+.|..+ ... ++++.. ..+..++++.+.+ ++.+.+...|+++||.+|
T Consensus 257 -~~~~~~~~~~~~~~~~~~~l~~~---------~~~-~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~L~~~gI~vr 319 (376)
T d1eg5a_ 257 -ELSEAAKHMEKLRSKLVSGLMNL---------GAH-IITPLE-ISLPNTLSVSFPN-----IRGSTLQNLLSGYGIYVS 319 (376)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHTT---------TCE-ECSCTT-SBCTTEEEEECTT-----CCHHHHHHHHHHTTEECB
T ss_pred -chhhhhhhhhhhhhhhccccccc---------ccc-cccccc-ccccceeeeccCC-----CCHHHHHHHHhhCCeEEe
Confidence 56778888888899999998874 222 333322 2456788999887 668889999999999999
Q ss_pred cccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 506 CGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 506 ~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
+|++|+++....+. .+..... ......++||+|+|+|||.||||+++++|+++++
T Consensus 320 ~G~~c~~~~~~~~~-----~l~~~gi--~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 320 TSSACTSKDERLRH-----VLDAMGV--DRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp C------------C-----HHHHTTC--CHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CcchhcCCccchhH-----HHHHcCC--CcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 99999865332211 1111000 0001113899999999999999999999999875
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=100.00 E-value=4.5e-41 Score=355.86 Aligned_cols=378 Identities=11% Similarity=0.086 Sum_probs=282.6
Q ss_pred HHHHHhhhccCCCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCC
Q 037063 96 ADRIRAQDYFHLSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGS 175 (588)
Q Consensus 96 ~~~iR~~~f~~l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~ 175 (588)
+..+|+ +||.+ ++.||||++++|+.|+.|++++.+++.. .++|+++. ...+.
T Consensus 15 l~~~R~-~F~~~--~~~iYLd~as~g~~p~~v~~a~~~~l~~-~~~~~~~~------------------------~~~~~ 66 (404)
T d1qz9a_ 15 LAPLRQ-QFALP--EGVIYLDGNSLGARPVAALARAQAVIAE-EWGNGLIR------------------------SWNSA 66 (404)
T ss_dssp TGGGGG-GBCCC--TTCEECCTTTSCCCBTTHHHHHHHHHHT-CCCCCGGG------------------------HHHHT
T ss_pred HHHHHh-cCCCC--CCCEEcCCcccccCCHHHHHHHHHHHHH-HhcccCcc------------------------cccch
Confidence 456775 69976 7999999999999999999998776632 34443210 00111
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhC-----CCCCCCe-EEEcCCCchhHHHHHHHHHHhcCC
Q 037063 176 EESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESY-----PFYSNPR-LLTVYDHENEAAALMIESSKKRGA 249 (588)
Q Consensus 176 ~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~-----~~~~gd~-ll~~~e~~s~~~~~~~~~a~~~G~ 249 (588)
...++++++|+++|+++|+++++ |+||+|+|++++.++.+. ...+++. |++..+++++...+....++....
T Consensus 67 ~~~~~~e~~R~~iA~llga~~~e--i~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 144 (404)
T d1qz9a_ 67 GWRDLSERLGNRLATLIGARDGE--VVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQ 144 (404)
T ss_dssp SGGGHHHHHHHHHHTTTTCCTTS--EEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHhCCCCCc--EEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeee
Confidence 22467899999999999999887 999999999999876543 1456777 567888887655554433333322
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCC
Q 037063 250 RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMD 328 (588)
Q Consensus 250 ~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~ 328 (588)
+.+ .++.++.++++++|+ ++|+||+++|++|.||.++|+++| ++|+++|+.++||++|.++ ..
T Consensus 145 -----~~~-~~~~~~~~~~~~~i~--------~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g--~~ 208 (404)
T d1qz9a_ 145 -----GYT-LRLVDSPEELPQAID--------QDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAG--AV 208 (404)
T ss_dssp -----SCE-EEEESSGGGHHHHCS--------TTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTT--TS
T ss_pred -----cee-ccccccchhHHHhcC--------CCceEEEEecccccccceecHHHHhccccccccceeEEeecccc--cc
Confidence 222 234567789999998 899999999999999999999999 9999999999999999998 56
Q ss_pred CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 329 TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
++++..+++|++++|+||+++.+|.|+|+++++++..+.+++...++.+......... ..... ....+| +.||.+..
T Consensus 209 ~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~-~~~~~~~~ 285 (404)
T d1qz9a_ 209 PVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEP-RYEPS-NGIARY-LCGTQPIT 285 (404)
T ss_dssp CCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCS-SCCBC-SSGGGG-CCSCCCHH
T ss_pred ccccccccceEEEEechhhcccCCceEEEEEechhhhhhCCccccccCCccccccccc-ccccc-ccchhh-hhhhccch
Confidence 6777777799999999997654466689999999988777655443211111000000 00011 111255 78888887
Q ss_pred chhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 409 GVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
+. ..+..+++++..+|++.+.++...+.+++...+..+. ..++++|++|.+...++++++|++.+
T Consensus 286 ~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~------~~~~~~i~~p~~~~~r~~~vsf~~~~------ 350 (404)
T d1qz9a_ 286 SL---AMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRC------AAHELTLVTPREHAKRGSHVSFEHPE------ 350 (404)
T ss_dssp HH---HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH------TTSCCEECSCSSGGGBCSEEEEECTT------
T ss_pred hH---HHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhc------cCCCEEEECCCCccceeeEEEEecCC------
Confidence 75 6777889999999999999999988888777655542 24789999998877889999999865
Q ss_pred CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecC-CCCCHHHHHHHHHHHHHhhh
Q 037063 489 DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALG-CLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 489 ~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg-~~~t~eDv~~li~~l~~~l~ 567 (588)
+..+.+.|.++||.+. .|. .| +||||++ +|||+|||++++++|+++|+
T Consensus 351 -~~~v~~~L~~~gi~~~---~r~-------------------------~~--~lRiS~~h~ynt~~did~~~~~L~~vl~ 399 (404)
T d1qz9a_ 351 -GYAVIQALIDRGVIGD---YRE-------------------------PR--IMRFGFTPLYTTFTEVWDAVQILGEILD 399 (404)
T ss_dssp -HHHHHHHHHTTTEECE---EET-------------------------TT--EEEEECCTTTCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHCCCEEe---ecC-------------------------CC--eEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 6778888999999642 221 23 8999995 79999999999999999987
Q ss_pred h
Q 037063 568 A 568 (588)
Q Consensus 568 ~ 568 (588)
+
T Consensus 400 ~ 400 (404)
T d1qz9a_ 400 R 400 (404)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-34 Score=303.67 Aligned_cols=328 Identities=14% Similarity=0.116 Sum_probs=250.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++++++|+.+++++|++ ++|.|+||+|+|++++.++.++ +.+|++++ ...++++ ..| ...++..+..+..++.
T Consensus 51 ~~i~~ea~~~l~~llg~~-~~~~ii~~gsgT~a~~~~i~~l-~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~ 125 (388)
T d1h0ca_ 51 YQIMDEIKEGIQYVFQTR-NPLTLVISGSGHCALEAALVNV-LEPGDSFLVGANGIWG--QRA-VDIGERIGARVHPMTK 125 (388)
T ss_dssp HHHHHHHHHHHHHHHTCC-CSEEEEESSCHHHHHHHHHHHH-CCSSCCEEECBSSHHH--HHH-HHHHHHHC--CBCCBC
T ss_pred HHHHHHHHHHHHHHhCCC-CCcEEEEcCcHHHHHHHHHHHh-hccCCceeeeccccee--eee-cccccccccccccccc
Confidence 789999999999999996 4578999999999999999999 88999855 5555554 334 4556677888888877
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+ ....++.+++++.+.. .++++|+++|++|.||.++|+++| ++|+++|+++++|++|+++ ..++++..+
T Consensus 126 ~-~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g--~~~~d~~~~ 195 (388)
T d1h0ca_ 126 D-PGGHYTLQEVEEGLAQ-------HKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLG--GTPLYMDRQ 195 (388)
T ss_dssp C-TTCCCCHHHHHHHHHH-------HCCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTT--TSCCCTTTT
T ss_pred C-CccccchHHHHHHhcc-------CCcceEEEeeeeeccccccCHHHHHHHhhcccccceeccccccc--ccccccccc
Confidence 6 4567888888887763 578999999999999999999999 9999999999999999998 566777777
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccc-ccccccccCCCCCccchhhHH
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELET-LDESSQSKFPESSISGVSSKL 414 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~-~~~~~f~e~GT~~~~~~~~~~ 414 (588)
++|++++|.||++|. |.|+|+++++++.++.+.+...++ .... ... .....+.. ....++ +.+|+++..+ .
T Consensus 196 ~~D~~~~s~~K~~~g-p~g~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~-~~~~~~~~~~~~~~~-~~~t~~~~~~---~ 267 (388)
T d1h0ca_ 196 GIDILYSGSQKALNA-PPGTSLISFSDKAKKKMYSRKTKP-FSFY-LDI-KWLANFWGCDDQPRM-YHHTIPVISL---Y 267 (388)
T ss_dssp TCSEEEEESSSTTCC-CTTCEEEEECHHHHHHHTTCSSCC-SCST-TCH-HHHHHHTTCSSSCCC-CCSCCCHHHH---H
T ss_pred ccceecccccccccC-CCceEEEeecHHHHHhhhhccccc-cccc-ccc-chhhhhhhhcccccc-ccccccHHHH---H
Confidence 799999999998874 899999999999887776544331 0000 000 00000000 011244 6788888775 7
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHH
Q 037063 415 VECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQ 494 (588)
Q Consensus 415 al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~ 494 (588)
++..+++++.+.|++.+.++...+.+++++.+..+ | ..++.+........+++|++++ | ++...+.
T Consensus 268 ~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~-------g---~~~~~~~~~~rs~~i~~~~~p~--~--~~~~~~~ 333 (388)
T d1h0ca_ 268 SLRESLALIAEQGLENSWRQHREAAAYLHGRLQAL-------G---LQLFVKDPALRLPTVTTVAVPA--G--YDWRDIV 333 (388)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-------T---CCBSSCSGGGBCTTEEEEECCT--T--CCHHHHH
T ss_pred HHHHHHHHHHHhccccccccccchhHHHHHHHhhc-------C---cccccCCHHHcCCeEEEEECCC--C--CCHHHHH
Confidence 88899999999999999999999999999999886 2 2333333222334688999864 1 5576664
Q ss_pred -HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe-cCCCCCHHHHHHHHHHHHHhhhh
Q 037063 495 -KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA-LGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 495 -~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS-lg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.+++++||.++.|..|. . . ..|||| +|+++|.|||++++++|+++|++
T Consensus 334 ~~L~~~~gI~v~~G~~~~---------------~---------~--~~iRis~~g~~~t~edid~li~aL~~~L~~ 383 (388)
T d1h0ca_ 334 SYVIDHFDIEIMGGLGPS---------------T---------G--KVLRIGLLGCNATRENVDRVTEALRAALQH 383 (388)
T ss_dssp HHHHHHHCEECEECCGGG---------------T---------T--TEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEeCCchhh---------------c---------C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 55577899999986652 0 2 289999 89999999999999999999886
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.7e-32 Score=282.17 Aligned_cols=331 Identities=11% Similarity=0.104 Sum_probs=244.6
Q ss_pred hHHHHHHHHHHHHHhCCC--CCCceEEEecCHHHHHHHHHHhC--CCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEE
Q 037063 178 SELESKIRKRIMDFMNIS--EDDYTLVFTANQSSAFKLLAESY--PFYSNPRLL-TVYDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~--~~e~~vvft~g~T~al~lv~~s~--~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
.++++++++.+.++++.. .+.+.|+||+|+|+++++++.++ ++++||+++ ...++++. .| ...++..|..+.
T Consensus 35 ~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~--~~-~~~~~~~~~~~~ 111 (382)
T d2bkwa1 35 VSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSD--RF-ADCLRSYGAQVD 111 (382)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHH--HH-HHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhh--hh-hhhccccccccc
Confidence 567788888888888752 22346999999999999999987 457899955 55566543 23 345677888888
Q ss_pred EEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHc--CcEEEEeCCCcCCCCCCC
Q 037063 253 SAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEK--GWHVLLDATALGSKDMDT 329 (588)
Q Consensus 253 ~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~--g~~vvvDaa~~~~~d~~~ 329 (588)
.+...+....++.+++++++.. .++++++++++++.||...|++.+ +.|+++ ++++++|++|+++ ..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g--~~p 182 (382)
T d2bkwa1 112 VVRPLKIGESVPLELITEKLSQ-------NSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIG--CEE 182 (382)
T ss_dssp EECCSSTTSCCCHHHHHHHHHH-------SCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTT--TSC
T ss_pred cccccCCCCccchhHHHHHhhh-------ccchheeeeeccccccccccchhhhhhccccccceeeeeecccccc--ccc
Confidence 8765434456788888888763 678999999999999999999999 777665 5999999999998 577
Q ss_pred CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccc--ccccccccCCCCCc
Q 037063 330 LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELET--LDESSQSKFPESSI 407 (588)
Q Consensus 330 l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~--~~~~~f~e~GT~~~ 407 (588)
++++.+++|++++|.||+++. |.|+|++++++++++.+.+...++ ................. ....++ ..+|+++
T Consensus 183 id~~~~giD~~~~s~~K~l~g-P~G~g~l~vs~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Tp~~ 259 (382)
T d2bkwa1 183 FEFDEWGVDFALTASQKAIGA-PAGLSISLCSSRFMDYALNDSKNG-HVHGYFSSLRRWTPIMENYEAGKGA-YFATPPV 259 (382)
T ss_dssp CCTTTTTCSEEEEESSSTTCC-CSCEEEEEECHHHHHHHTCHHHHC-CCSCSTTCHHHHHHHHHHHHTTCCC-CSSCCCH
T ss_pred ccccccCeeEEeecccccCcC-CCchhhhhccHHHHhhhhhcccCC-Ccccchhhhhhhhhhhhcccccccc-cccCCcH
Confidence 788888899999999998853 999999999999988877654332 11110000000000000 000122 4678888
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc-ccEEEEEeecCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR-GPSLAFNVFDWNGT 486 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r-g~iv~f~~~~~~g~ 486 (588)
..+ +++..||+++.+.|++.+.+|.+.|++++++.+... ..+..+.+.....+ ..+++|.+.+
T Consensus 260 ~~i---~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~---------~~~~~~~~~~~~~~s~~v~~~~~~~---- 323 (382)
T d2bkwa1 260 QLI---NSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNG---------LQLTSVSRYPSNMSAHGLTAVYVAD---- 323 (382)
T ss_dssp HHH---HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT---------TCCEESSCSSSTTBCSSCEEEECSC----
T ss_pred HHH---HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhc---------ccccccccCchhccCCcEEEEcCCC----
Confidence 776 899999999999999999999999999999999873 34455544332233 3567777764
Q ss_pred CcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe-cCCCCCHHHHHHHHHHHHHh
Q 037063 487 RIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA-LGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 487 ~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS-lg~~~t~eDv~~li~~l~~~ 565 (588)
+.++.++|+++||.++.|..|. .+...+||| +|+.++.|||++++++|..+
T Consensus 324 ---~~~~~~~L~~~gi~i~~G~~~~-------------------------~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i 375 (382)
T d2bkwa1 324 ---PPDVIAFLKSHGVVIAGGIHKD-------------------------IGPKYIRIGHMGVTACNKNLPYMKNCFDLI 375 (382)
T ss_dssp ---HHHHHHHHHHTTEECBCCCCTT-------------------------TGGGEEEECCCGGGTSSTTCTHHHHHHHHH
T ss_pred ---HHHHHHHHHHCCeEEECCCChh-------------------------hcCCEEEEeCCcCCCCHHHHHHHHHHHHHH
Confidence 6788899999999999885542 222389999 88888899999998888765
Q ss_pred hh
Q 037063 566 LD 567 (588)
Q Consensus 566 l~ 567 (588)
.+
T Consensus 376 ~~ 377 (382)
T d2bkwa1 376 KL 377 (382)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5e-31 Score=273.81 Aligned_cols=321 Identities=13% Similarity=0.050 Sum_probs=231.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCe-EEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPR-LLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~-ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++++++|+++++++|+++++..|+||+|+|+++++++.++. .++++ +++...++.... ...++..+..+..+..
T Consensus 32 ~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 107 (361)
T d1m32a_ 32 IGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL-GPQDKVLIVSNGAYGARM---VEMAGLMGIAHHAYDC 107 (361)
T ss_dssp TTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC-CTTCCEEEEESSHHHHHH---HHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhh-hhccccceeeehhhhhhH---HHHhhhhhcccccccc
Confidence 467789999999999998765568999999999999999994 55555 555555543222 2334455666666555
Q ss_pred cCCCCccCH--HHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCC
Q 037063 257 AWPNLRIHS--GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLS 333 (588)
Q Consensus 257 ~~~~~~i~~--e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~ 333 (588)
. ....... +.....+. ++++++++++++|.||.++|+++| ++||++|+++++|++|+++ ..++++.
T Consensus 108 ~-~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G--~~~~d~~ 176 (361)
T d1m32a_ 108 G-EVARPDVQAIDAILNAD--------PTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFG--GIPMDIA 176 (361)
T ss_dssp C-TTSCCCHHHHHHHHHHC--------TTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTT--TSCCCTT
T ss_pred c-ccCCccchhhHHHHHhc--------cCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccC--ccccccc
Confidence 4 2223333 23333333 789999999999999999999999 9999999999999999998 5677777
Q ss_pred CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhH
Q 037063 334 LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSK 413 (588)
Q Consensus 334 ~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~ 413 (588)
.+++||+++|+||+++. |.|+|+++++++.++.+++...++ ..... ............ ..+|++...+
T Consensus 177 ~~~~D~~~~s~~K~l~g-p~G~g~l~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~-~~~t~~~~~~--- 244 (361)
T d1m32a_ 177 ALHIDYLISSANKCIQG-VPGFAFVIAREQKLAACKGHSRSL-SLDLY------AQWRCMEDNHGK-WRFTSPTHTV--- 244 (361)
T ss_dssp TTTCSEEEEESSSTTCC-CSSEEEEEEEHHHHTTCTTCCSCS-TTCHH------HHHHHHHHTTTC-CSSCCCHHHH---
T ss_pred ccccceEEeeecccccC-CCCceEEEechhhhhhhccccccc-cccch------hhhccccccccc-cCCCCCchhh---
Confidence 88899999999997753 899999999999998888777653 11000 000000000122 4567777665
Q ss_pred HHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc-cEEEEEeecCCCCCcCHH
Q 037063 414 LVECKGLDHADALG-LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG-PSLAFNVFDWNGTRIDPA 491 (588)
Q Consensus 414 ~al~~aL~~l~~~G-~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg-~iv~f~~~~~~g~~i~~~ 491 (588)
.++..+++.+...| .+.+.++...+++.+.+.+..+ | ..+..+. ..++ .+++|.++. +..++..
T Consensus 245 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------g---~~~~~~~--~~rs~~v~~~~~p~--~~~~~~~ 310 (361)
T d1m32a_ 245 LAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-------G---FNTLLDD--ELHSPIITAFYSPE--DPQYRFS 310 (361)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-------T---CCBSSCG--GGBCSSEEEEECCC--CTTCCHH
T ss_pred hHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhc-------C---CcccCCh--hhcCCcEEEEECCC--CCCCCHH
Confidence 66677777666665 5677788888999999998885 2 2333332 2344 566777653 3336688
Q ss_pred HHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 492 LVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 492 ~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
.+.+.|.++||.++.|..+. .+ .+|||+..|+|.+||++++++|++.|
T Consensus 311 ~~~~~l~~~gi~i~~G~~~~-------------------------~~--~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 311 EFYRRLKEQGFVIYPGKVSQ-------------------------SD--CFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp HHHHHHHHTTEECEECCCSS-------------------------SC--EEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCcEEECCCcCC-------------------------CC--EEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 88899999999998875441 23 89999765789999999999999875
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.98 E-value=9.2e-31 Score=273.23 Aligned_cols=357 Identities=13% Similarity=0.064 Sum_probs=261.0
Q ss_pred CeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHH
Q 037063 111 NYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMD 190 (588)
Q Consensus 111 ~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~ 190 (588)
...||...|-+..|+.|++++..... .| .+.+..++++++|+.+++
T Consensus 17 p~~~l~~PGP~~v~~~Vl~am~~~~~------~h----------------------------r~~ef~~i~~~~r~~l~~ 62 (377)
T d1vjoa_ 17 PSRLLLGPGPSNAHPSVLQAMNVSPV------GH----------------------------LDPAFLALMDEIQSLLRY 62 (377)
T ss_dssp CCCEECSSSCCCCCHHHHHHHSSCCC------CT----------------------------TSHHHHHHHHHHHHHHHH
T ss_pred CcceeecCCCCCCCHHHHHHhCcCCC------CC----------------------------CCHHHHHHHHHHHHHHHH
Confidence 45799999999999999999742210 00 012237899999999999
Q ss_pred HhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeE-EEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHH
Q 037063 191 FMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRL-LTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLM 269 (588)
Q Consensus 191 ~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~l-l~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~ 269 (588)
++|++ ++|.|+|++|+|++++.++.++ +.+|+++ +...++++. +....++..+..+..+... .+...+.+..+
T Consensus 63 ll~~~-~~~~i~~~g~gT~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 136 (377)
T d1vjoa_ 63 VWQTE-NPLTIAVSGTGTAAMEATIANA-VEPGDVVLIGVAGYFGN---RLVDMAGRYGADVRTISKP-WGEVFSLEELR 136 (377)
T ss_dssp HHTCC-CSCEEEESSCHHHHHHHHHHHH-CCTTCEEEEEESSHHHH---HHHHHHHHTTCEEEEEECC-TTCCCCHHHHH
T ss_pred HhCCC-CCeEEEEcCcHHHHHHHHHHhc-cccccccceeeechhhh---hhhhhhhhhcccccccccC-CCCcccchhhh
Confidence 99995 4578999999999999999999 8889984 456666542 2345667778887777766 33445555555
Q ss_pred HHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccC
Q 037063 270 KKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIF 348 (588)
Q Consensus 270 ~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~ 348 (588)
..... .++++|++++++|.||.+.|+++| ++||++|+.+++|++|+++ ..+++++.+++|++++|.||++
T Consensus 137 ~~~~~-------~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g--~~~~~~~~~~~d~~~~s~~K~~ 207 (377)
T d1vjoa_ 137 TALET-------HRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLG--GVPIFLDAWGVDLAYSCSQKGL 207 (377)
T ss_dssp HHHHH-------HCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTT--TSCCCTTTTTCSEEECCSSSTT
T ss_pred hhhhc-------CcceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhh--hhhhcccccccceeeecccccc
Confidence 55442 689999999999999999999999 9999999999999999988 5667777777999999999966
Q ss_pred CCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCH
Q 037063 349 GENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGL 428 (588)
Q Consensus 349 G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~ 428 (588)
+. |.|+|++++++..++...+...++ ... ... . ...........+ ..+|+++..+ .++..++..+...|+
T Consensus 208 ~g-p~g~~~~~~~~~~~~~~~~~~~~~-~~~--~~~-~-~~~~~~~~~~~~-~~~~~~~~~~---~~l~~~~~~~~~~g~ 277 (377)
T d1vjoa_ 208 GC-SPGASPFTMSSRAIEKLQRRRTKV-ANW--YLD-M-NLLGKYWGSERV-YHHTAPINLY---YALREALRLIAQEGL 277 (377)
T ss_dssp CS-CSSCEEEEECHHHHHHHHTCSSCC-SCS--TTC-H-HHHHHHHSTTCC-CCSCCCHHHH---HHHHHHHHHHHHHCH
T ss_pred cC-CCEEEEecchhhHHhhhhccCCCC-cce--eec-c-chhhhccCcccc-cccccceech---hhhHHHHhhhhhcCc
Confidence 53 889999999998887666544331 100 000 0 000000001123 4555555543 666778888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHH-HHHHhCCcEeccc
Q 037063 429 ILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQ-KLADRHNISLSCG 507 (588)
Q Consensus 429 ~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~-~~l~~~gI~v~~G 507 (588)
+.+.++.+.+.+++++.|... +..++.++. .....+++|.+++. +++..+. ++++++||.++.|
T Consensus 278 ~~~~~~~~~~~~~l~~~l~~~----------~~~~~~~~~-~rs~~v~~~~~p~~----~~~~~l~~~L~~~~gI~v~~G 342 (377)
T d1vjoa_ 278 ANCWQRHQKNVEYLWERLEDI----------GLSLHVEKE-YRLPTLTTVCIPDG----VDGKAVARRLLNEHNIEVGGG 342 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----------TCCBSSCGG-GBCSSEEEEECCTT----CCHHHHHHHHHHHHCEECEEC
T ss_pred hHHHHHHHHHhhhhhhhhhcc----------CceeecChH-hcCCeEEEEECCCC----CCHHHHHHHHHhcCCEEEecC
Confidence 999999999999999999884 233444322 22346778888641 5677775 4557889999988
Q ss_pred cccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe-cCCCCCHHHHHHHHHHHHHhhh
Q 037063 508 FLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA-LGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 508 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS-lg~~~t~eDv~~li~~l~~~l~ 567 (588)
..| .+.+.|||| +|+++|.|||++++++|+++|+
T Consensus 343 ~~~--------------------------~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 343 LGE--------------------------LAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp CGG--------------------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred ccc--------------------------ccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 654 111289999 5899999999999999999874
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.97 E-value=4.6e-30 Score=269.23 Aligned_cols=360 Identities=12% Similarity=0.080 Sum_probs=256.8
Q ss_pred eecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHhC
Q 037063 114 CFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMN 193 (588)
Q Consensus 114 yLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lg 193 (588)
+|=..|-+..++.|++++..... . + .+.+..++++++|+.+++++|
T Consensus 19 ~l~~PGP~~~~~~V~~Am~~~~~------~--------------------------h--r~~ef~~i~~~~r~~L~~ll~ 64 (388)
T d2ch1a1 19 IMMGPGPSNCSKRVLTAMTNTVL------S--------------------------N--FHAELFRTMDEVKDGLRYIFQ 64 (388)
T ss_dssp BCCSSSSCCCCHHHHHHTTSCCC------C--------------------------T--TCHHHHHHHHHHHHHHHHHHT
T ss_pred eeeeCCCCCCCHHHHHHhCcCCC------C--------------------------C--CCHHHHHHHHHHHHHHHHHhC
Confidence 56667777889999998642210 0 0 112237899999999999999
Q ss_pred CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHHHH
Q 037063 194 ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMKKI 272 (588)
Q Consensus 194 a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i 272 (588)
++ +.+.|+||+|+|.+++.++.++ +.+|++++ ...++++ ..| ...+++.+..+..+... +....+.+++++.+
T Consensus 65 ~~-~~~~i~~~gsgT~a~ea~~~~l-~~~~~~vl~~~~g~~~--~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 138 (388)
T d2ch1a1 65 TE-NRATMCVSGSAHAGMEAMLSNL-LEEGDRVLIAVNGIWA--ERA-VEMSERYGADVRTIEGP-PDRPFSLETLARAI 138 (388)
T ss_dssp CC-CSCEEEESSCHHHHHHHHHHHH-CCTTCEEEEEESSHHH--HHH-HHHHHHTTCEEEEEECC-TTSCCCHHHHHHHH
T ss_pred CC-CCeEEEEcCcHHHHHHHHHHHh-cccccccccccccccc--ccc-hhhhhhhcccccccccc-cccccchhhhhhhh
Confidence 95 3346778889999999999999 88899865 4445443 334 45667789889888887 44556777777766
Q ss_pred hhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCCCC
Q 037063 273 VGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGEN 351 (588)
Q Consensus 273 ~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G~~ 351 (588)
.. .++++++++|++|.||.+.|+++| ++||++|+.++||++|+++ ..+++++.+++|++++|.||+++.
T Consensus 139 ~~-------~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g--~~pid~~~~~~d~~~~s~~K~~~g- 208 (388)
T d2ch1a1 139 EL-------HQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLC--GVPFYMDKWEIDAVYTGAQKVLGA- 208 (388)
T ss_dssp HH-------HCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBT--TBCCCTTTTTCCEEECCCC-CCCC-
T ss_pred cc-------CCcceeeeeecccccccccchhhhcchhccccceeeeeeeeccc--ccccchhccCceEEEEccccccCC-
Confidence 52 578999999999999999999999 9999999999999999998 567777778899999999997764
Q ss_pred CCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHH
Q 037063 352 PSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILI 431 (588)
Q Consensus 352 P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i 431 (588)
|.|+|+++++++.++.+.+...++ . .... +............+...|+....+..+.++..+++.+...|.+..
T Consensus 209 p~G~g~~~~~~~~~~~~~~~~~~~--~-~~~~---~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~ 282 (388)
T d2ch1a1 209 PPGITPISISPKALDVIRNRRTKS--K-VFYW---DLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQ 282 (388)
T ss_dssp CSSCEEEEECHHHHHHHHTCSSCC--S-CGGG---CHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCeEEEEeccHHHHHhhhcccCcc--c-cccc---cchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999887665544331 0 0000 000000000001102223333333334777788888888888888
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc-cEEEEEeecCCCCCcCHHHHHHH-HHhCCcEeccccc
Q 037063 432 SNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG-PSLAFNVFDWNGTRIDPALVQKL-ADRHNISLSCGFL 509 (588)
Q Consensus 432 ~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg-~iv~f~~~~~~g~~i~~~~v~~~-l~~~gI~v~~G~~ 509 (588)
.++.+.+..+++..+.... +.+..+. +..|+ .+++|++++ | ++..++.+. ++++||.++.|..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~rs~~v~~~~~p~--g--~~~~~l~~~l~~~~gI~v~~G~~ 347 (388)
T d2ch1a1 283 IKRRIECAQILYEGLGKMG----------LDIFVKD-PRHRLPTVTGIMIPK--G--VDWWKVSQYAMNNFSLEVQGGLG 347 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHT----------CCBSSCS-GGGBCTTEEEEECCT--T--CCHHHHHHHHHHHHCBCCBCCCG
T ss_pred HHHHHHHHHHHHhhhhhcc----------cccccCC-HHHhCCeEEEEECCC--C--CCHHHHHHHHhhcCCEEEeCCCc
Confidence 8888888888888877641 2222222 22444 578899864 1 667777554 5777999999865
Q ss_pred cCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe-cCCCCCHHHHHHHHHHHHHhhhhhh
Q 037063 510 QNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA-LGCLTNFEDTYRLWAFVSRFLDADF 570 (588)
Q Consensus 510 c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS-lg~~~t~eDv~~li~~l~~~l~~~~ 570 (588)
|. . .+ .+||| +|++||.|||++++++|+++|++.-
T Consensus 348 ~~---------------~---------~~--~~RIs~~g~~~t~edI~~ll~alke~L~~~~ 383 (388)
T d2ch1a1 348 PT---------------F---------GK--AWRVGIMGECSTVQKIQFYLYGFKESLKATH 383 (388)
T ss_dssp GG---------------T---------TT--EEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred cc---------------c---------CC--EEEEcCCcCCCCHHHHHHHHHHHHHHHHhhC
Confidence 51 1 22 89999 7999999999999999999998853
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=3.2e-25 Score=236.65 Aligned_cols=324 Identities=10% Similarity=-0.017 Sum_probs=238.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCC---ceEEEecCHHHHHHHHHHhCCC----------CCCCe-EEEcCCCchhHHHHHHHH
Q 037063 178 SELESKIRKRIMDFMNISEDD---YTLVFTANQSSAFKLLAESYPF----------YSNPR-LLTVYDHENEAAALMIES 243 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e---~~vvft~g~T~al~lv~~s~~~----------~~gd~-ll~~~e~~s~~~~~~~~~ 243 (588)
.+++.++.+.+++++|++... ..-++|+|+|+|+.+.+.+... ..++. +++....|. .| .+.
T Consensus 92 ~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~---s~-~Ka 167 (450)
T d1pmma_ 92 AAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQI---CW-HKF 167 (450)
T ss_dssp HHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCH---HH-HHH
T ss_pred HHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHH---HH-HHH
Confidence 789999999999999996422 2379999999998877665421 12333 443333342 23 677
Q ss_pred HHhcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HH------HHHcCcEEE
Q 037063 244 SKKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SV------AAEKGWHVL 316 (588)
Q Consensus 244 a~~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~------a~~~g~~vv 316 (588)
|+..|++++.|+.+..++.+|+++|+++++ ++|.+|+.++.++.||.+.|+++| ++ |+++|++++
T Consensus 168 a~~~gi~~~~v~~~~~~~~~d~~~L~~~i~--------~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lH 239 (450)
T d1pmma_ 168 ARYWDVELREIPMRPGQLFMDPKRMIEACD--------ENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMH 239 (450)
T ss_dssp HHHTTCEEEECCCBTTBCSCCHHHHHHHCC--------TTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHcCCCceEeeecCCCCcCcHHHHHHHhh--------hCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEE
Confidence 888999999999985579999999999998 789999999999999999999987 55 466899999
Q ss_pred EeCCCcCC---C--CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcc----cCCCCCCCceEeeecCCCc
Q 037063 317 LDATALGS---K--DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVL----SGSTSSVSTIMGIEPSFSE 387 (588)
Q Consensus 317 vDaa~~~~---~--d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l----~~~~~g~~g~v~~~~~~~~ 387 (588)
||||+.++ + .-..++....++|++.+|+||+++. |.|+|++++|++....- .+.+.+ +...
T Consensus 240 VDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~-p~g~g~l~~r~~~~~~~~~~~~~~yl~--~~~~------- 309 (450)
T d1pmma_ 240 IDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLA-PLGCGWVIWRDEEALPQELVFNVDYLG--GQIG------- 309 (450)
T ss_dssp EECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCC-CSSCEEEEESSGGGSCGGGCEEEEETT--EEEE-------
T ss_pred eehhhccceeeeechhhhhhhcccceeEeecChhhccCC-CCCeeEEEecChhhhhhhcccccCcCC--CCcC-------
Confidence 99997653 1 1223444556799999999997775 99999999998653111 111111 1100
Q ss_pred ccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCC
Q 037063 388 IIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPK 467 (588)
Q Consensus 388 ~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~ 467 (588)
.+...++.+...+ .++...+..+...|++++.++...++++|.+.|+++ +.++++.+.
T Consensus 310 ----------~~~~~~sr~~~~~---~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~---------~~~el~~~~ 367 (450)
T d1pmma_ 310 ----------TFAINFSRPAGQV---IAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKL---------GPYEFICTG 367 (450)
T ss_dssp ----------ECCSCCSCBSHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------SCEEEEEEC
T ss_pred ----------CCcccCccchHHH---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhC---------CCeEEEeCC
Confidence 0102233333332 445667777877889999999999999999999984 678888776
Q ss_pred CCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecC
Q 037063 468 VMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALG 547 (588)
Q Consensus 468 ~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg 547 (588)
.+..+.++|+|.+.+.....++...+.+.|.++|+.|.....- + . ..+..++|+++.
T Consensus 368 ~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~p-~---------------~-------~~~~~~lRvvv~ 424 (450)
T d1pmma_ 368 RPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLG-G---------------E-------ATDIVVMRIMCR 424 (450)
T ss_dssp CTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEECC-T---------------T-------CTTCEEEEEECC
T ss_pred CCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCcC-C---------------C-------cCCcEEEEEEcc
Confidence 5556778999999876555678888999999999887542110 0 0 022338999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhh
Q 037063 548 CLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 548 ~~~t~eDv~~li~~l~~~l~~ 568 (588)
..+|.|++++|++.|++.++.
T Consensus 425 ~~~t~e~~d~lv~dl~~~v~~ 445 (450)
T d1pmma_ 425 RGFEMDFAELLLEDYKASLKY 445 (450)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999987654
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=5.8e-26 Score=234.78 Aligned_cols=341 Identities=15% Similarity=0.071 Sum_probs=243.9
Q ss_pred eecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHhC
Q 037063 114 CFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMN 193 (588)
Q Consensus 114 yLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lg 193 (588)
||=..|-+..|+.|++++..... + ++ + ..-.++++++|+.++++++
T Consensus 2 ~L~~PGP~~v~~~V~~am~~~~~-----~-------------------hr-----~-----~~f~~i~~~~~~~l~~ll~ 47 (348)
T d1iuga_ 2 WLLTPGPVRLHPKALEALARPQL-----H-------------------HR-----T-----EAAREVFLKARGLLREAFR 47 (348)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCC-----C-------------------TT-----S-----HHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCCCCCHHHHHHhcCCCC-----C-------------------CC-----C-----HHHHHHHHHHHHHHHHHhC
Confidence 66667788889999999753321 0 00 1 1126889999999999999
Q ss_pred CCCCCceEEEecCHHHHHHHHHHhCCCCCCCe-EEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHHHH
Q 037063 194 ISEDDYTLVFTANQSSAFKLLAESYPFYSNPR-LLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMKKI 272 (588)
Q Consensus 194 a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~-ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i 272 (588)
++. +.++|++|+|.|++.++.++ +++|++ +++..++++ ..| ...+++.|.++..++.++.+ .++.+++
T Consensus 48 ~~~--~~i~~~gsgT~a~e~~~~nl-~~~g~~vlv~~~G~f~--~~~-~~~a~~~~~~~~~~~~~~g~-~~~~~~~---- 116 (348)
T d1iuga_ 48 TEG--EVLILTGSGTLAMEALVKNL-FAPGERVLVPVYGKFS--ERF-YEIALEAGLVVERLDYPYGD-TPRPEDV---- 116 (348)
T ss_dssp CSS--EEEEEESCHHHHHHHHHHHH-CCTTCEEEEEECSHHH--HHH-HHHHHHTTCEEEEEECCTTC-CCCTTTS----
T ss_pred CCC--CEEEEeCchHHHHHHHHHhc-ccccccceeecchHHH--HHH-HHHHHhcCcccccccccCCC-ccccccc----
Confidence 864 35999999999999999998 899998 456667664 334 57888999999999887543 2333221
Q ss_pred hhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcC--cEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCC
Q 037063 273 VGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKG--WHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFG 349 (588)
Q Consensus 273 ~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g--~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G 349 (588)
...++++|+++|.++.||.++|+++| ++|++++ ..+++|++++++ ..+++++.+++|++++|.||+++
T Consensus 117 -------~~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g--~~~i~~d~~~iD~~~~~sqK~l~ 187 (348)
T d1iuga_ 117 -------AKEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLL--VGEVALEAMGVDAAASGSQKGLM 187 (348)
T ss_dssp -------CCSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBT--TBCCCSGGGTCSEEEEESSSTTC
T ss_pred -------cccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhccc--ccccccccccCCEEEecccccee
Confidence 12678999999999999999999999 9998874 789999999987 56677777779999999999774
Q ss_pred CCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHH
Q 037063 350 ENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLI 429 (588)
Q Consensus 350 ~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~ 429 (588)
. |.|+|++++++++++++++..+.. .. ..++... .... ..+|+++..+ +++..+|+.+.+.|.+
T Consensus 188 g-ppG~~~v~~s~~~le~~~~~~~~~-dl---------~~~~~~~-~~~~-~~~Tp~v~~i---~~l~~aL~~~~~~~~~ 251 (348)
T d1iuga_ 188 C-PPGLGFVALSPRALERLKPRGYYL-DL---------ARELKAQ-KEGE-SAWTPAINLV---LAVAAVLEEVLPRLEE 251 (348)
T ss_dssp C-CSCEEEEEECHHHHHTCCCCSSTT-CH---------HHHHHHH-TTTC-CSSCCCHHHH---HHHHHHHHHHGGGHHH
T ss_pred c-CCceeeeeechHHHhhhccccccc-ch---------hhhhhhh-ccCc-ccccccchHH---HHHHHHHHHHHHHHhH
Confidence 2 899999999999998887642110 00 0001000 0011 3457777665 8999999988666544
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccc
Q 037063 430 LISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFL 509 (588)
Q Consensus 430 ~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~ 509 (588)
.+ ++.+.....++..+..+ ++++.. +. ....+++|++++ | ++...+.+.|+++||.+..|..
T Consensus 252 ~~-~~~~~~~~~~~~~~~~~----------gl~~~~-~~--~s~~v~~~~~P~--g--~~~~~~~~~l~~~gi~i~~G~~ 313 (348)
T d1iuga_ 252 HL-ALKAWQNALLYGVGEEG----------GLRPVP-KR--FSPAVAAFYLPE--G--VPYARVKEAFAQRGAVIAGGQG 313 (348)
T ss_dssp HH-HHHHHHHHHHHHHHHHT----------TCEESC-SS--BCTTCEEEECCT--T--CCHHHHHHHHHTTTEECEECCG
T ss_pred HH-HHHHHHHHHHhhhhhhh----------hhccCh-hh--cCCeEEEEECCC--C--CCHHHHHHHHHHCCeEEEcCcc
Confidence 43 33333444555554443 355543 21 223578898864 2 6788899999999999988732
Q ss_pred cCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 510 QNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 510 c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+ .....+||+.--+++.+||++++++|+++|++
T Consensus 314 ~--------------------------l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~ 346 (348)
T d1iuga_ 314 P--------------------------LKGKVFRLSLMGAYDRYEALGVAGMFREVLEE 346 (348)
T ss_dssp G--------------------------GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred c--------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 11128999976688999999999999998875
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.93 E-value=2.4e-24 Score=222.86 Aligned_cols=175 Identities=14% Similarity=0.127 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
.+.+.+++++|+++|++ .+++|+|+|+|+.+++.++ .++||+|++ ..+|++ .+ ..++..|++++.+|.+
T Consensus 47 ~l~~~~~~~~A~~~g~e----~~~~t~g~t~a~~~~~~al-~~~gd~Vi~~~~~h~s-~~----~~~~~~g~~v~~v~~~ 116 (364)
T d2e7ja1 47 PIHDFIHNQLPKFLGCD----VARVTNGAREAKFAVMHSL-AKKDAWVVMDENCHYS-SY----VAAERAGLNIALVPKT 116 (364)
T ss_dssp CHHHHHHTHHHHHTTSS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTCCHH-HH----HHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHHHHHhCcC----EEEEECcHHHHHHHHHHHH-hCCCcEEEeecccccc-cc----hHHHhccceEEEeeec
Confidence 46788999999999984 3899999999999999999 899999664 556665 22 2346689999999985
Q ss_pred C-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 258 W-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 258 ~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
. .++.+++++++++|++ +.+..++++|++++++|+||.+.|+++| ++|+++|+++++|+++.++ ..++++..+
T Consensus 117 ~~~~~~i~~~~l~~~i~~---~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g--~~~~~~~~~ 191 (364)
T d2e7ja1 117 DYPDYAITPENFAQTIEE---TKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIG--RMPVSLKEI 191 (364)
T ss_dssp CTTTCCCCHHHHHHHHHH---HTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBT--TBCCCHHHH
T ss_pred cccccccCHHHHHhhhhh---hcccCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhh--hhhhccccc
Confidence 3 4678999999999973 2334567899999999999999999999 9999999999999999876 233344444
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEeCcchhccc
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLS 369 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~ 369 (588)
++|++++|+||++|. |.|+|+++++++.++.+.
T Consensus 192 g~D~~~~S~~K~~~~-~g~~g~l~~~~~~~~~~~ 224 (364)
T d2e7ja1 192 GADFIVGSGHKSMAA-SGPIGVMGMKEEWAEIVL 224 (364)
T ss_dssp TCSEEEEEHHHHSSC-CSSCEEEEECTTTTTTTT
T ss_pred ccceeeeccccccCC-CCCEEEEEECHHHHHHHH
Confidence 599999999998884 667999999998876553
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.93 E-value=5.7e-26 Score=235.19 Aligned_cols=355 Identities=10% Similarity=-0.013 Sum_probs=225.1
Q ss_pred CeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHH
Q 037063 111 NYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMD 190 (588)
Q Consensus 111 ~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~ 190 (588)
.+||..++|-..+|++|++++.+.+. +.. +. +...+.++|++ ....++++++|+.|++
T Consensus 2 ~~~~nF~pGP~~~p~~V~~a~~~~~~-~~~-~~----------~~~~~~~sHRs----------~~~~~~~~~~r~~l~~ 59 (360)
T d1w23a_ 2 KQVFNFNAGPSALPKPALERAQKELL-NFN-DT----------QMSVMELSHRS----------QSYEEVHEQAQNLLRE 59 (360)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSS-SST-TS----------SSCGGGSCTTS----------HHHHHHHHHHHHHHHH
T ss_pred CceeEeCCCCcCCCHHHHHHHHHHHH-hhc-cc----------CccccccCcCC----------HHHHHHHHHHHHHHHH
Confidence 46898889999999999999876552 111 11 11112222211 1126799999999999
Q ss_pred HhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHH
Q 037063 191 FMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMK 270 (588)
Q Consensus 191 ~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~ 270 (588)
++|++ +++.|+|++|++++...++....+.+++.+++...++. ...| ...++..+..+......+. .....++++.
T Consensus 60 l~~~~-~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~-~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 135 (360)
T d1w23a_ 60 LLQIP-NDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSW-SEKA-LKEAKLLGETHIAASTKAN-SYQSIPDFSE 135 (360)
T ss_dssp HHTCC-TTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHH-HHHH-HHHHHTTSEEEEEEECGGG-TSCSCCCGGG
T ss_pred HhCCC-CCCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccch-hhhh-HHHHHHhhhcceeeccccc-cccchhhhhh
Confidence 99995 55789999999998887777664666777654444433 2333 4566777877777665422 2222233322
Q ss_pred HHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCC
Q 037063 271 KIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFG 349 (588)
Q Consensus 271 ~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G 349 (588)
..+.+.+.+.+|.||...|+++| ++||++|++++||++|++| ..+++++++.+||++++.||+++
T Consensus 136 ------------~~~~~~~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g--~~~id~~~~~vd~~~~~~~k~~~ 201 (360)
T d1w23a_ 136 ------------FQLNENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDIL--SRPLKVNQFGMIYAGAQKNLGPS 201 (360)
T ss_dssp ------------CCCCTTEEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTT--SSCCCGGGCSEEEEETTTTTSCT
T ss_pred ------------cccccccceeEecCCccccceeeeeccccceeeEEeecccccc--ccccccccccceEEeeccccccC
Confidence 22233356778889999999999 9999999999999999998 56666777768999888888655
Q ss_pred CCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhC-H
Q 037063 350 ENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALG-L 428 (588)
Q Consensus 350 ~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G-~ 428 (588)
.|.|+++.++...+...+.... +... .... ..+...|+..... .+...++..+...+ .
T Consensus 202 ---~~~~~~~~~~~~~~~~~~~~~~--~~~~---------~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 260 (360)
T d1w23a_ 202 ---GVTVVIVKKDLLNTKVEQVPTM--LQYA---------THIK----SDSLYNTPPTFSI---YMLRNVLDWIKDLGGA 260 (360)
T ss_dssp ---TCEEEEEEHHHHCSCCTTCCGG--GCHH---------HHHH----TTTCSSCCCHHHH---HHHHHHHHHHHHTTHH
T ss_pred ---CcceeeEechhhhcccccCCcc--hhhh---------hhhh----hhhhcccccceee---echhHHHHHHhhhhhh
Confidence 3567777666554333222211 1100 0000 0102234443332 23334444444444 4
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc-cEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccc
Q 037063 429 ILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG-PSLAFNVFDWNGTRIDPALVQKLADRHNISLSCG 507 (588)
Q Consensus 429 ~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg-~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G 507 (588)
..+.++............... ......... +..|+ .+++|++.+. +....+...|+++||.++.|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~rS~~vvsf~i~~~----~~~~~~~~~l~~~GI~~~~G 326 (360)
T d1w23a_ 261 EAIAKQNEEKAKIIYDTIDES---------NGFYVGHAE-KGSRSLMNVTFNLRNE----ELNQQFLAKAKEQGFVGLNG 326 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---------TTSSEESSC-GGGBCSSEEEEECSSH----HHHHHHHHHHHHTTEESCBC
T ss_pred HHHHHHHHHHHHHHHHHHhhc---------ccccccCCC-hhhcceeEEEEEcCCC----ccHHHHHHHHHHCCCeeeeC
Confidence 555555555555555555442 112222222 22444 5899999751 34567888899999999988
Q ss_pred cccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 508 FLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 508 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
..| .| .||||+..++|.|||++|+++|++|.+.
T Consensus 327 ~~~--------------------------~g--giRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 327 HRS--------------------------VG--GCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp CTT--------------------------TC--SEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCc--------------------------cC--cEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 666 22 5999998888999999999999999764
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=3.3e-25 Score=228.50 Aligned_cols=356 Identities=11% Similarity=-0.023 Sum_probs=232.4
Q ss_pred eecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHHhC
Q 037063 114 CFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDFMN 193 (588)
Q Consensus 114 yLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~lg 193 (588)
|-=+.|-..+|+.|++++.+.+.. .. +.++ +.+.++++ +.+..++++++|+.|++++|
T Consensus 3 ~nF~pGP~~~p~~Vl~a~~~~~~~-~~-~~~~----------~~~~~sHR----------s~ef~~l~~~~r~~l~~l~~ 60 (360)
T d1bjna_ 3 FNFSSGPAMLPAEVLKQAQQELRD-WN-GLGT----------SVMEVSHR----------GKEFIQVAEEAEKDFRDLLN 60 (360)
T ss_dssp EECCSSSCCCCHHHHHHHHHTSSS-GG-GSSS----------CGGGSCTT----------SHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCcCCCHHHHHHHHHHHhh-hc-ccCc----------cccccCcC----------CHHHHHHHHHHHHHHHHHhC
Confidence 333567778899999999776632 11 2111 01111111 11126889999999999999
Q ss_pred CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHHHHh
Q 037063 194 ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMKKIV 273 (588)
Q Consensus 194 a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i~ 273 (588)
++ +++.|+|++|++++.+.++...-..+++.+++...+.. ...| ...++..|..+...... .+...+.+++++.+.
T Consensus 61 ~~-~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 136 (360)
T d1bjna_ 61 VP-SNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYW-AASA-IKEAKKYCTPNVFDAKV-TVDGLRAVKPMREWQ 136 (360)
T ss_dssp CC-TTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSHH-HHHH-HHHHTTTSEEEEEECEE-EETTEEEECCGGGCC
T ss_pred CC-CCCEEEEECCchHHHHhhhhhcccccccccceecccch-hhhh-HHHHhhcCccceeeccc-cCCCcchhhhhhhhc
Confidence 96 45789999999888776665543556666554444432 3334 67778888877777665 334455555554444
Q ss_pred hhccccCCCcceEEEEeCCCCCCCccCCHHHHHHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCCCCCC
Q 037063 274 GKRKKKKKKKRGLFVFPLQSKVTGARYSYMWMSVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFGENPS 353 (588)
Q Consensus 274 ~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G~~P~ 353 (588)
.+++++++.+.+|.||...|+..+ .++.+++.|++|+++.++ ..+++ .+.+|++++|+||.+|. |.
T Consensus 137 --------~~~~~v~v~~~~~~t~~~~~~~~i-~~~~~~~~v~vDa~~~~~--~~~vd--~~~~dv~~~ss~k~~~~-~~ 202 (360)
T d1bjna_ 137 --------LSDNAAYMHYCPNETIDGIAIDET-PDFGADVVVAADFSSTIL--SRPID--VSRYGVIYAGAQKNIGP-AG 202 (360)
T ss_dssp --------CCSSCSCEEECSEETTTTEECCCC-CCCCTTCCEEEECTTTTT--SSCCC--GGGCSEEEEETTTTTSS-TT
T ss_pred --------cCCceeEEEecccccccCccccce-ecccccceeeeeeecccc--ceeee--eccceeEEEEccccccc-CC
Confidence 788999999999999999998776 236778999999998886 22333 33489999999998875 77
Q ss_pred ceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHH
Q 037063 354 GFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISN 433 (588)
Q Consensus 354 G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~ 433 (588)
|.|++++++...+........ +.. .... . ..+...+...... ..+...++..+...+++...+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~--~~~--------~~~~-~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 265 (360)
T d1bjna_ 203 LTIVIVREDLLGKANIACPSI--LDY--------SILN-D----NGSMFNTPPTFAW--YLSGLVFKWLKANGGVAEMDK 265 (360)
T ss_dssp CEEEEEEGGGCSCCCTTSCGG--GCH--------HHHH-H----TTTCSSCCCHHHH--HHHHHHHHHHHHTTHHHHHHH
T ss_pred CceeEeeehhhhhccccCCcc--hhh--------HHHH-h----hhhhccccccchH--HHHHHHHHHHhhhhhHHHHHH
Confidence 888888887665433322211 100 0000 0 1101222222222 233334444555545677777
Q ss_pred HHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcc
Q 037063 434 RARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIF 513 (588)
Q Consensus 434 r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~ 513 (588)
+.+.++.++...+..+ ... .+.+.....+..+++|++++ | +++..+..+|+++||.++.|+.|
T Consensus 266 ~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~rs~~v~~f~~~~--~--~~~~~~~~~l~~~Gi~~~~G~~~--- 328 (360)
T d1bjna_ 266 INQQKAELLYGVIDNS---------DFY-RNDVAKRNRSRMNVPFQLAD--S--ALDKLFLEESFAAGLHALKGHRV--- 328 (360)
T ss_dssp HHHHHHHHHHHHHHHC---------SSE-ECCBCGGGBCSSEEEEEESS--G--GGHHHHHHHHHHTTEECCBCCTT---
T ss_pred HHHHHHHHHHHhhhcc---------ccc-cccCCcccccceEEEEEcCC--c--ccHHHHHHHHHHCCCEeecCCCc---
Confidence 7777777777777664 223 33333323345789999975 2 56788889999999999888544
Q ss_pred cccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 514 FSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 514 ~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.| .||||++.++|.|||++|+++|++|.++
T Consensus 329 -----------------------~g--~~Ris~~~~~t~edV~~li~~l~e~~~~ 358 (360)
T d1bjna_ 329 -----------------------VG--GMRASIYNAMPLEGVKALTDFMVEFERR 358 (360)
T ss_dssp -----------------------TC--SEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------cC--eEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 23 5999999999999999999999997654
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.92 E-value=2.6e-24 Score=223.15 Aligned_cols=353 Identities=10% Similarity=0.069 Sum_probs=224.5
Q ss_pred eeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHHH
Q 037063 112 YVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMDF 191 (588)
Q Consensus 112 ~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~~ 191 (588)
+.|.=..|-..+|+.|++++.+.+.. ..+++ .+.+.++|++ .+-.++++++|+.|+++
T Consensus 3 ~~~~F~pGP~~vp~~V~eam~~~~~~-~~~~~-----------~~~~~~sHRs----------~ef~~~~~~~r~~l~~l 60 (361)
T d2c0ra1 3 RAYNFNAGPAALPLEVLERAQAEFVD-YQHTG-----------MSIMEMSHRG----------AVYEAVHNEAQARLLAL 60 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSS-STTSS-----------SCGGGSCTTS----------HHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCCcCCCHHHHHHHHHHHhh-hcccC-----------ccccccCcCC----------HHHHHHHHHHHHHHHHH
Confidence 34522467778899999999766522 22111 1112222221 12378999999999999
Q ss_pred hCCCCCCceEEEecCHHHHH-HHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHH
Q 037063 192 MNISEDDYTLVFTANQSSAF-KLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMK 270 (588)
Q Consensus 192 lga~~~e~~vvft~g~T~al-~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~ 270 (588)
||++ ++|.|+|++|++++. ..+..++ +.++++++... +.+....| ...+++.|..+..++.+ ....++.+++++
T Consensus 61 ~~~~-~~~~i~~~~gs~t~~~ea~~~~l-~~~~~~~l~~~-~g~~~~~~-~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~ 135 (361)
T d2c0ra1 61 LGNP-TGYKVLFIQGGASTQFAMIPMNF-LKEGQTANYVM-TGSWASKA-LKEAKLIGDTHVAASSE-ASNYMTLPKLQE 135 (361)
T ss_dssp TTCC-SSEEEEEESSHHHHHHHHHHHHH-CCTTCEEEEEE-CSHHHHHH-HHHHHHHSCEEEEEECG-GGTTCSCCCGGG
T ss_pred hCCC-CCCEEEEECCCchHHHHHHHhcc-ccCCCceEEEe-echhhhhh-hhhhhhcCceeeeeccc-cccccchhhhhh
Confidence 9996 457899998886655 4555555 77788754332 22324455 67889999999999987 444567666665
Q ss_pred HHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEEEeccCccCC
Q 037063 271 KIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLFKPDFLICSFYKIFG 349 (588)
Q Consensus 271 ~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~vv~S~~K~~G 349 (588)
.+. ..+ +.+++|.||...|+.+| ++|+++|++++||++|+++ ..++++.. .|+.+++++|.+|
T Consensus 136 ~~~--------~~~----~~~v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g--~~~id~~~--~di~~~s~~k~~~ 199 (361)
T d2c0ra1 136 IQL--------QDN----AAYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDIL--SRPFDLNQ--FGLVYAGAQKNLG 199 (361)
T ss_dssp CCC--------CTT----EEEEEEESEETTTTEECSSCCCCTTSCEEEECTTTTT--SSCCCGGG--CSEEEEETTTTTC
T ss_pred hcc--------cCc----ceEEEEecccceecceEEEeeccCCceEEEEeecccc--cccccccc--ceeEEEecccccc
Confidence 554 222 34566789999999999 9999999999999999998 45666655 4666678899888
Q ss_pred CCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhC-H
Q 037063 350 ENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALG-L 428 (588)
Q Consensus 350 ~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G-~ 428 (588)
. |.|.| +++..+......+..... .. ...... ......++..... .++..++......+ .
T Consensus 200 ~-~~~~~-~~~~~~~~~~~~~~~~~~-~~---------~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 260 (361)
T d2c0ra1 200 P-SGVTV-VIVREDLVAESPKHLPTM-LR---------YDTYVK----NNSLYNTPPSFGI---YMVNEVLKWIEERGGL 260 (361)
T ss_dssp C-SSCEE-EEEEGGGSSSCCTTSCGG-GC---------HHHHHH----TTTCSSCCCHHHH---HHHHHHHHHHHHTTHH
T ss_pred c-ccCcE-EEEEhHHhhhCccccccc-cc---------cccccc----cccccccccceee---ehhhhHHHhhhhccch
Confidence 4 44444 444444333332222110 00 000000 0001222332222 33334444443443 5
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc-cEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccc
Q 037063 429 ILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG-PSLAFNVFDWNGTRIDPALVQKLADRHNISLSCG 507 (588)
Q Consensus 429 ~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg-~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G 507 (588)
..+.++.+..+..+....... ......+.++. .|+ .+++|++++ | +++.++.+.|+++||.++.|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~rS~~~~~~~~~~--~--~~~~~~~~~L~~~GI~~~~G 326 (361)
T d2c0ra1 261 EGVQQANRKKASLIYDAIDQS--------GGFYRGCVDVD--SRSDMNITFRLAS--E--ELEKEFVKASEQEGFVGLKG 326 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS--------TTSSEESSCGG--GBCSSEEEEECSC--H--HHHHHHHHHHHHTTEESCBC
T ss_pred HHHHHHHHHHHHHhhhhhhhc--------ccccccCCChh--hccceEEEEECCC--c--ccHHHHHHHHHHCCCEEecC
Confidence 556666666666666666653 22333444332 344 578888864 1 56788999999999999988
Q ss_pred cccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 508 FLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 508 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
..| .| .+|||+..+++.|||++|+++|++|.++
T Consensus 327 ~~~--------------------------~g--~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 327 HRS--------------------------VG--GLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp CTT--------------------------TC--SEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCc--------------------------CC--eEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 544 23 5999999999999999999999998764
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.88 E-value=5.7e-21 Score=204.59 Aligned_cols=364 Identities=10% Similarity=0.030 Sum_probs=234.6
Q ss_pred CeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHHH
Q 037063 111 NYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIMD 190 (588)
Q Consensus 111 ~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia~ 190 (588)
..-|+.|--++..+..++-.+...... .|.. .|+ .+ -...+++.++-+++++
T Consensus 73 ~P~f~~~~~~~~~~~~~l~~~~~~~~n---~n~~-------~~~----------~s--------p~~t~iE~~v~~wl~~ 124 (476)
T d1js3a_ 73 SPYFFAYFPTASSYPAMLADMLCGAIG---CIGF-------SWA----------AS--------PACTELETVMMDWLGK 124 (476)
T ss_dssp STTBCSSSCCCCCHHHHHHHHHHHHHC---CCCS-------SGG----------GC--------HHHHHHHHHHHHHHHH
T ss_pred CCCeeEeCCCCCCHHHHHHHHHHHhhc---cccc-------chh----------hh--------hhHHHHHHHHHHHHHH
Confidence 346888887777777777765433321 1110 010 01 1137888999999999
Q ss_pred HhCCCCC-------CceEEEecCHHHHHHHHHHhCC-------------CCCC---Ce--EE-EcCCCchhHHHHHHHHH
Q 037063 191 FMNISED-------DYTLVFTANQSSAFKLLAESYP-------------FYSN---PR--LL-TVYDHENEAAALMIESS 244 (588)
Q Consensus 191 ~lga~~~-------e~~vvft~g~T~al~lv~~s~~-------------~~~g---d~--ll-~~~e~~s~~~~~~~~~a 244 (588)
++|.+.. +-.-+||+|+|+|+-..+.... +..+ .+ ++ +...|+| + .+.+
T Consensus 125 l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~S--i---~ka~ 199 (476)
T d1js3a_ 125 MLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS--V---ERAG 199 (476)
T ss_dssp HTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH--H---HHHH
T ss_pred HhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHH--H---HHHH
Confidence 9998632 2357999999998765543221 1111 12 33 3444543 2 4556
Q ss_pred HhcCCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcC
Q 037063 245 KKRGARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALG 323 (588)
Q Consensus 245 ~~~G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~ 323 (588)
.-.|..++.|+++ +++++|+++|++.|++. ......+-+|+.++.++.+|.+.|+++| ++|+++|++++||||..+
T Consensus 200 ~~lGl~~~~v~~d-~~~~md~~~L~~~i~~~--~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg 276 (476)
T d1js3a_ 200 LIGGVKLKAIPSD-GKFAMRASALQEALERD--KAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAG 276 (476)
T ss_dssp HHHTCEEEEECCC-TTSCCCHHHHHHHHHHH--HHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGG
T ss_pred HhcCceEEEeccC-CCCCcCHHHHHHHHHHH--HhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEecccch
Confidence 6779999999998 88999999999999842 2223457889999999999999999999 999999999999999544
Q ss_pred C----CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchh--ccc--CCCCCCCceEeeecCCCccccccccc
Q 037063 324 S----KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSAS--VLS--GSTSSVSTIMGIEPSFSEIIELETLD 395 (588)
Q Consensus 324 ~----~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~--~l~--~~~~g~~g~v~~~~~~~~~~~~~~~~ 395 (588)
. .....+-....++|.+++++||+++. |.++|++++|+.... .+. ..+.. .. .... ....+..
T Consensus 277 ~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~-P~~~g~~l~r~~~~~~~~~~~~~~~~~--~~---~~~~--~~~~~~~- 347 (476)
T d1js3a_ 277 SAFICPEFRHLLNGVEFADSFNFNPHKWLLV-NFDCSAMWVKRRTDLTGAFKLDPVYLK--HS---HQGS--GLITDYR- 347 (476)
T ss_dssp GGGGSTTTGGGGTTGGGCSEEEECHHHHSSC-CSSCEEEEESCHHHHHGGGC-----------------C--CSCCCGG-
T ss_pred hhhhhcchhhhhcCCcccceeeecCcccccc-CCcceeecccchHHHHHHHhcChhhhc--cc---cccc--ccccccc-
Confidence 2 11122211223489999999998886 999999999985321 111 11100 00 0000 0000000
Q ss_pred ccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE
Q 037063 396 ESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS 475 (588)
Q Consensus 396 ~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i 475 (588)
.+.-.++..+.+ ..+..+++.+-..|+.++.++...+++++.+.|++ .|.++++.| ...++
T Consensus 348 --~~~~~~sr~~~a----l~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~---------~~~fel~~~----p~l~i 408 (476)
T d1js3a_ 348 --HWQLPLGRRFRS----LKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQ---------DPRFEVCAE----VTLGL 408 (476)
T ss_dssp --GSSSCSCCCCTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------CTTEEECSC----CCSSE
T ss_pred --ccccccchhhHH----HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc---------CCCeEEECC----CceEE
Confidence 010122333333 34557788888888999999999999999999998 478999876 35689
Q ss_pred EEEEeecCCCCCcCHHHHHHHHHhCC-cEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecC-CCCCHH
Q 037063 476 LAFNVFDWNGTRIDPALVQKLADRHN-ISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALG-CLTNFE 553 (588)
Q Consensus 476 v~f~~~~~~g~~i~~~~v~~~l~~~g-I~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg-~~~t~e 553 (588)
|+|++.+.+. ++. .+.+.+.+.| +.+... . ..|..++|++++ +.++.+
T Consensus 409 V~Fr~~~~d~--~n~-~l~~~l~~~G~~~~s~t--------------------~-------~~g~~~lR~~i~n~~Tt~~ 458 (476)
T d1js3a_ 409 VCFRLKGSDG--LNE-ALLERINSARKIHLVPC--------------------R-------LRGQFVLRFAICSRKVESG 458 (476)
T ss_dssp EEEEESSCHH--HHH-HHHHHHHHHTSCBCEEE--------------------E-------ETTEEEEEEECCCTTCCHH
T ss_pred EEEEccCChH--HHH-HHHHHHHhcCCEEEeee--------------------e-------ECCEEEEEEEeCCCCCCHH
Confidence 9999865321 222 2333333333 333211 0 145559999987 779999
Q ss_pred HHHHHHHHHHHhhhh
Q 037063 554 DTYRLWAFVSRFLDA 568 (588)
Q Consensus 554 Dv~~li~~l~~~l~~ 568 (588)
||+.+++.|++..++
T Consensus 459 did~~~~~i~~~a~~ 473 (476)
T d1js3a_ 459 HVRLAWEHIRGLAAE 473 (476)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=2.7e-21 Score=200.75 Aligned_cols=294 Identities=14% Similarity=0.101 Sum_probs=200.5
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcC-CCchhHHHHHHHHHHhcCCEEEEEeccC--
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVY-DHENEAAALMIESSKKRGARVSSAEFAW-- 258 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~-e~~s~~~~~~~~~a~~~G~~v~~v~~~~-- 258 (588)
.++|+.||+++++++++ |++|+|+++|+.+++.++ ..+||.|++.. .|+. .. ..++..|.+++.++++.
T Consensus 64 ~elr~aiA~~~~~~~~~--Iiit~G~~~al~~~~~~l-~~~~d~v~~~~p~~~~-~~----~~~~~~g~~~~~~~~~~~~ 135 (368)
T d1v2da_ 64 PALREALAEEFAVEPES--VVVTSGATEALYVLLQSL-VGPGDEVVVLEPFFDV-YL----PDAFLAGAKARLVRLDLTP 135 (368)
T ss_dssp HHHHHHHHHHHTSCGGG--EEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCTT-HH----HHHHHTTCEEEEEECEEET
T ss_pred HHHHHHHHhhcccCCcc--eeeccchHHHHHHHhhcc-ccccccccccCCcchh-hh----hHHHhcCCccceecccccc
Confidence 37899999999998776 999999999999999999 88999976543 3442 22 33456788888887642
Q ss_pred CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcCCC---CCCCCC
Q 037063 259 PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALGSK---DMDTLG 331 (588)
Q Consensus 259 ~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~~~---d~~~l~ 331 (588)
....+|.+++++++. ++++++++++++||||..++.++ | ++|+++|+++++|++..... ......
T Consensus 136 ~~~~~d~~~l~~~~~--------~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~ 207 (368)
T d1v2da_ 136 EGFRLDLSALEKALT--------PRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLR 207 (368)
T ss_dssp TEEECCHHHHHTTCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHH
T ss_pred ccccCCHHHHHHhhc--------cCceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccc
Confidence 345689999998887 78999999999999999999555 5 77999999999999854321 011111
Q ss_pred CCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchh
Q 037063 332 LSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVS 411 (588)
Q Consensus 332 l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~ 411 (588)
........++.++.|.+|.+..++|+++..+++++.+....... ..++....+
T Consensus 208 ~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~q-- 260 (368)
T d1v2da_ 208 EFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWT-------------------------SFSAPTPLQ-- 260 (368)
T ss_dssp HHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHH-------------------------TSSCCHHHH--
T ss_pred cccccccceeecccccccccccccccccccccccchhhhhhhcc-------------------------ccccccccc--
Confidence 11122456777888866653456999998888876554322100 011111111
Q ss_pred hHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCH
Q 037063 412 SKLVECKGLDHADALG-LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDP 490 (588)
Q Consensus 412 ~~~al~~aL~~l~~~G-~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~ 490 (588)
.++..++....... ++.+.++.++.++++.+.|.++ +++++.|. .+..+-+.+++ .+
T Consensus 261 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----------g~~~~~p~----g~~~~~~~l~~-----~~- 318 (368)
T d1v2da_ 261 --AGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM----------GLRVYVPE----GTYFLMAELPG-----WD- 318 (368)
T ss_dssp --HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT----------TCCEECCS----BSSEEEEECTT-----CC-
T ss_pred --cccccccccccchhhHHHHHHHHHHhhhhhhhhHHhc----------CcEEecCC----ceeEEEEeCCc-----cH-
Confidence 22234443322211 5667777788888899999885 35566552 23445445544 22
Q ss_pred HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 491 ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 491 ~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
..++++++||.+++|..|..+ ..+.++||+|++ ++.|+++++++.|+++|
T Consensus 319 --~~~ll~~~gI~v~pg~~F~~~----------------------~~~~~~iRis~~--~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 319 --AFRLVEEARVALIPASAFYLE----------------------DPPKDLFRFAFC--KTEEELHLALERLGRVV 368 (368)
T ss_dssp --HHHHHHHTCEECEEGGGGCSS----------------------SCCTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHhCCEEEEechhhCCC----------------------CCCCCEEEEEec--CCHHHHHHHHHHHHHhC
Confidence 356788999999998665311 123349999976 58899999999999875
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.86 E-value=1.6e-20 Score=196.51 Aligned_cols=302 Identities=14% Similarity=0.116 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
++.+.+.+.+.+..|..-+..+|++|+|+++|+.+++.++ .++||+|++....+.++ ...++..|++++.++.+.
T Consensus 71 ~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~-~~~gd~Vlv~~P~y~~~----~~~~~~~~~~~v~~~~~~ 145 (388)
T d1j32a_ 71 RLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAM-IEPGDEVIIPAPFWVSY----PEMVKLAEGTPVILPTTV 145 (388)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEESSCCTHH----HHHHHHTTCEEEEECCCG
T ss_pred HHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHH-hCCCCEEEEcCCCcHHH----HHHHHHhcCeEEEEeccc
Confidence 3334444444444455433345999999999999999999 89999987665544322 234456788998888753
Q ss_pred C-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcC-CCC---CCC
Q 037063 259 P-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALG-SKD---MDT 329 (588)
Q Consensus 259 ~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~-~~d---~~~ 329 (588)
. +..+|.++|++.++ +++++++++.++||||..++.+++ ++|+++|++||+|.+... -.+ ..+
T Consensus 146 ~~~~~~d~~~l~~~~~--------~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s 217 (388)
T d1j32a_ 146 ETQFKVSPEQIRQAIT--------PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLS 217 (388)
T ss_dssp GGTTCCCHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCC
T ss_pred ccccCCCHHHHHHhCC--------CCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCC
Confidence 2 34689999999988 789999999999999999998774 678999999999998422 111 111
Q ss_pred CC-CC--CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 330 LG-LS--LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 330 l~-l~--~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
+. +. .....+++.|++|.||.+...+|+++.++++++.+....... ..++..
T Consensus 218 ~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~ 272 (388)
T d1j32a_ 218 IGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHS-------------------------TSNVCT 272 (388)
T ss_dssp GGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTT-------------------------TCSCCH
T ss_pred HHHhCcccccceeEecCChhhhhcchhHeEEEEECHHHHHHHHHhhhhc-------------------------cccccH
Confidence 10 00 011357899999999853456999999888776543221100 000111
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEE-EeecCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAF-NVFDWNG 485 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f-~~~~~~g 485 (588)
..+ .++...+....+. +++..++.++..+.+.+.|.++ +++++..| .|+...| .+...
T Consensus 273 ~~q----~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~---------~g~~~~~p-----~gg~~l~~~l~~~-- 331 (388)
T d1j32a_ 273 FAQ----YGAIAAYENSQDC-VQEMLAAFAERRRYMLDALNAM---------PGLECPKP-----DGAFYMFPSIAKT-- 331 (388)
T ss_dssp HHH----HHHHHHHHSCSHH-HHHHHHHHHHHHHHHHHHHHTC---------TTCBCCCC-----CBTTEECCBCGGG--
T ss_pred HHH----HHHhhcccchHHH-HHHHHHHHHHHHHHHHHHHHhC---------CCCEecCC-----CceEEEEEECCCC--
Confidence 111 1222222211111 4566666777777888888774 44554443 3444433 33321
Q ss_pred CCcCHHH-HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 486 TRIDPAL-VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 486 ~~i~~~~-v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
..+..+ +.++++++||.+.+|.... +.++||+|++ ++.|++++.++.|++
T Consensus 332 -~~~~~~~~~~ll~~~gV~v~pG~~F~--------------------------~~~~~Rls~~--~~~e~l~~al~rl~~ 382 (388)
T d1j32a_ 332 -GRSSLDFCSELLDQHQVATVPGAAFG--------------------------ADDCIRLSYA--TDLDTIKRGMERLEK 382 (388)
T ss_dssp -TCCHHHHHHHHHHHHCEECEEGGGGT--------------------------CTTBEEEECC--SCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHhCCEEEEeccccC--------------------------CCCeEEEEEe--CCHHHHHHHHHHHHH
Confidence 133444 5677888999999885431 1128999987 588999999999999
Q ss_pred hhhh
Q 037063 565 FLDA 568 (588)
Q Consensus 565 ~l~~ 568 (588)
+|+.
T Consensus 383 ~l~~ 386 (388)
T d1j32a_ 383 FLHG 386 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=4e-20 Score=190.91 Aligned_cols=283 Identities=11% Similarity=0.049 Sum_probs=189.9
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCe-EEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPR-LLTVYDHENEAAALMIESSKKRGARVSSAEFAWPN 260 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~-ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~ 260 (588)
.++|+.||+++|+++++ |++|+|+++++.+++.++ ..+||. |++....+. .+ ...++..|++++.++.+ ++
T Consensus 59 ~~Lr~~ia~~~gv~pe~--I~it~Gs~eai~~~~~~~-~~pgd~~Vl~~~P~y~-~~---~~~~~~~g~~v~~~~~~-~~ 130 (354)
T d1fg7a_ 59 KAVIENYAQYAGVKPEQ--VLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYG-MY---SVSAETIGVECRTVPTL-DN 130 (354)
T ss_dssp HHHHHHHHHHHTSCGGG--EEEESHHHHHHHHHHHHH-CCTTTCEEEECSSSCT-HH---HHHHHHHTCEEEECCCC-TT
T ss_pred HHHHHHHHHHhCCChHH--eeeccCchHHHHHHHHHh-hccccccccccccccc-cc---hhhhhccCceeeccccc-cc
Confidence 37999999999999876 999999999999999999 899985 776555443 22 34456679999999887 67
Q ss_pred CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH---HHHHHcCcEEEEeCC--CcCCCCCCCCCCCCC
Q 037063 261 LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM---SVAAEKGWHVLLDAT--ALGSKDMDTLGLSLF 335 (588)
Q Consensus 261 ~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I---~~a~~~g~~vvvDaa--~~~~~d~~~l~l~~~ 335 (588)
+.+|.++++..+ .++++++++.++|+||..++.+++ ..+.+++..+++|.+ .+.+...........
T Consensus 131 ~~~d~~~l~~~~---------~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~ 201 (354)
T d1fg7a_ 131 WQLDLQGISDKL---------DGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEY 201 (354)
T ss_dssp SCCCHHHHHTSC---------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTC
T ss_pred cccchhhhhhcc---------cccceeeccCCCccceeEeeecccccccccccccccccccccchhhccccccchhhccc
Confidence 789998887654 368999999999999999998775 233345677777766 222210111112233
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHH
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLV 415 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~a 415 (588)
..-+++.|++|.||++..++|+++..++.++.+....... . .+.... ..
T Consensus 202 ~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~~~~~~--~--------------------------~~~~~~---~~ 250 (354)
T d1fg7a_ 202 PHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPY--P--------------------------LSTPVA---DI 250 (354)
T ss_dssp TTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSS--C--------------------------SCHHHH---HH
T ss_pred ccceEEeCCccccCCCccccccccccchhhhhhhhhcCcc--c--------------------------hhhHHH---HH
Confidence 3557788999999965567999999998887664322110 0 000000 11
Q ss_pred HHHHH--HHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHH
Q 037063 416 ECKGL--DHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALV 493 (588)
Q Consensus 416 l~~aL--~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v 493 (588)
...++ +.... +....+++...++++.+.|.++ +++..+.| ..+..+-+.+.+ ...+
T Consensus 251 a~~~~~~~~~~~--~~~~~~~~~~~r~~l~~~l~~~---------~~~~~~~p----~~~~f~~~~~~~-------~~~~ 308 (354)
T d1fg7a_ 251 AAQALSPQGIVA--MRERVAQIIAEREYLIAALKEI---------PCVEQVFD----SETNYILARFKA-------SSAV 308 (354)
T ss_dssp HHHHTSHHHHHH--HHHHHHHHHHHHHHHHHHHHHS---------TTEEEECC----CSSSEEEEEETT-------HHHH
T ss_pred HHHHHhhhcccc--ccccchhhhhHHHHHHHHHHhC---------CCcceeCC----CCceEEEEeCCC-------HHHH
Confidence 11111 11111 2333445566677888888885 45543334 235566566543 6677
Q ss_pred HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCC-ccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 494 QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSG-VSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 494 ~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g-~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
.+.|.++||.|+.+..- .| .++||||+| |.||.++++++|+
T Consensus 309 ~~~L~~~gIlvr~~~~~--------------------------~~~~~~lRisig---t~ee~~~~l~aLk 350 (354)
T d1fg7a_ 309 FKSLWDQGIILRDQNKQ--------------------------PSLSGCLRITVG---TREESQRVIDALR 350 (354)
T ss_dssp HHHHHHTTEECEECTTS--------------------------TTCTTEEEEECC---CHHHHHHHHHHHH
T ss_pred HHHHHHCCcEEecCCCC--------------------------CCCCCEEEEEeC---CHHHHHHHHHHHh
Confidence 77788899999875321 11 129999987 8899999999976
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.86 E-value=7.6e-21 Score=203.55 Aligned_cols=244 Identities=10% Similarity=-0.082 Sum_probs=152.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHH-HHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSS-AFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~-al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
...+.++++++|+++|++ + .+|+.|+|. ++..++.++ +++||+|+++ ..|.| .+.... .+...+..+..++
T Consensus 65 ~~~i~eae~~~A~~~ga~---~-a~f~~~Gtt~~n~a~i~a~-~~~gd~Vi~~~~~H~S-v~~~~~-~l~~~~~~~~~~~ 137 (462)
T d1c4ka2 65 EGPAVAAEKHAARVYNAD---K-TYFVLGGSSNANNTVTSAL-VSNGDLVLFDRNNHKS-VYNSAL-AMAGGRPVYLQTN 137 (462)
T ss_dssp BTHHHHHHHHHHHHTTCS---E-EEEESSHHHHHHHHHHHHH-CCTTCEEEEETTCCHH-HHHHHT-TTTCCEEEEECEE
T ss_pred CHHHHHHHHHHHHHhCCC---e-EEEECCchHHHHHHHHHHh-cCCCCeEEecccchHH-HHHHHH-HHhcCCceeeecc
Confidence 346789999999999994 2 666666655 555556666 8999997755 45554 333211 2222334444444
Q ss_pred ccCCCC--------ccCHHHHHHHHhh-hccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC
Q 037063 256 FAWPNL--------RIHSGKLMKKIVG-KRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK 325 (588)
Q Consensus 256 ~~~~~~--------~i~~e~l~~~i~~-~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~ 325 (588)
++ +.+ .++.+.+++.+.. ..++....++.++++.+.+|..|.+.|+++| ++|+++|++|++|+|+.++.
T Consensus 138 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~ 216 (462)
T d1c4ka2 138 RN-PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYE 216 (462)
T ss_dssp EC-TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGG
T ss_pred cc-cccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccc
Confidence 44 332 2333334433321 0012234678888888999999999999999 99999999999999977641
Q ss_pred ---CC-----CCCCC---CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 326 ---DM-----DTLGL---SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 326 ---d~-----~~l~l---~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
+. ...+. ...++|++++|+||++|. +.|.+++.+++..+......... +.+. .
T Consensus 217 ~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~-~~~g~ll~~~~~~~~~~~~~~~~--~~~~------------~- 280 (462)
T d1c4ka2 217 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG-FSQTSQIHKKDSHIKGQLRYCDH--KHFN------------N- 280 (462)
T ss_dssp GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC-CTTCEEEEEECGGGTTSTTCCCH--HHHH------------H-
T ss_pred cccCcCCcchhhccccccccCCccEEEEecCccccc-ccceEEEEeccccccccchhhhH--HHHH------------H-
Confidence 11 11111 122369999999999994 66666666666554322211110 1100 0
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcc
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNL 449 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L 449 (588)
....+ +.+++++..+ +++..|..++...+.+++.++..++++++++++.++
T Consensus 281 ~~~~~-~t~sp~~~~~---asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~ 331 (462)
T d1c4ka2 281 SFNLF-MSTSPFYPMY---AALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKA 331 (462)
T ss_dssp HHHHH-SCSSCCHHHH---HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhc-ccCCchHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00023 5666666654 677777777765555777888888999999999886
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.7e-19 Score=188.15 Aligned_cols=337 Identities=11% Similarity=0.055 Sum_probs=232.2
Q ss_pred CCeeeecCCCC---CCC-CHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHH
Q 037063 110 NNYVCFDYIGH---GLF-SYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIR 185 (588)
Q Consensus 110 ~~~vyLD~a~~---gl~-~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r 185 (588)
.++-|+|.++. |+- .+.++++..+.+.+ +|.. + ..|+..+|. .+++.++.
T Consensus 36 ~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~--~G~~-~---------------------~~sr~~~g~--~~~~~~lE 89 (383)
T d1bs0a_ 36 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQ--FGIG-S---------------------GGSGHVSGY--SVVHQALE 89 (383)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHH--HCSC-C---------------------CSBTTTTCC--CHHHHHHH
T ss_pred CCeEEEEEEcccccccCCCHHHHHHHHHHHHH--hCCC-C---------------------CccccccCc--chHHHHHH
Confidence 35568887776 332 34566665555533 3322 1 122333333 57888999
Q ss_pred HHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCH
Q 037063 186 KRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHS 265 (588)
Q Consensus 186 ~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~ 265 (588)
+.||+++|.+ ..++.++++.|...++.++ .+++|.|+.+..+|..... -++..+++++.++.. |.
T Consensus 90 ~~LA~~~g~e----~al~~~SG~~an~~~i~al-~~~~d~v~~d~~~h~si~~----g~~~~~~~~~~~~hn------d~ 154 (383)
T d1bs0a_ 90 EELAEWLGYS----RALLFISGFAANQAVIAAM-MAKEDRIAADRLSHASLLE----AASLSPSQLRRFAHN------DV 154 (383)
T ss_dssp HHHHHHHTCS----EEEEESCHHHHHHHHHHHH-CCTTCEEEEETTCCHHHHH----HHHTSSSEEEEECTT------CH
T ss_pred HHHHHhcCCC----ceEEecccchhhHHHHHhh-cCCCceEEeeccccHHHhh----ccccCCCcceEecch------HH
Confidence 9999999984 3788888888988898998 7899999888887764443 345678888877653 78
Q ss_pred HHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCC-CCCCC---CCCCCCcEE
Q 037063 266 GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKD-MDTLG---LSLFKPDFL 340 (588)
Q Consensus 266 e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d-~~~l~---l~~~~~D~v 340 (588)
+++++.+.+ ..+++.+|++..+.+++|.+.|+++| ++|+++|++++||.+|..+.- ....+ .-....|++
T Consensus 155 ~~le~~l~~-----~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~ 229 (383)
T d1bs0a_ 155 THLARLLAS-----PCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELL 229 (383)
T ss_dssp HHHHHHHHS-----CCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEE
T ss_pred HHHHHHhcc-----cCCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccc
Confidence 999998872 23567899999999999999999999 999999999999999888620 00011 112347899
Q ss_pred EeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHH
Q 037063 341 ICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGL 420 (588)
Q Consensus 341 v~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL 420 (588)
+.++.|.+|. ..|++..+.+.++.++..... . .| ....+... .+++.+++
T Consensus 230 ~~t~~ka~g~---~Gg~v~~~~~~~~~l~~~~~~---~-------------------~~--s~~~~p~~---~aa~~~a~ 279 (383)
T d1bs0a_ 230 VVTFGKGFGV---SGAAVLCSSTVADYLLQFARH---L-------------------IY--STSMPPAQ---AQALRASL 279 (383)
T ss_dssp EEESSSTTSS---CCEEEEECHHHHHHHHHHCHH---H-------------------HS--SBCCCHHH---HHHHHHHH
T ss_pred cccccccccc---cccccccchhHHHHHHhhchh---h-------------------hh--cccccchH---HHHHHHHH
Confidence 9999999984 247777777776666432111 0 11 11111111 25566788
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhC
Q 037063 421 DHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRH 500 (588)
Q Consensus 421 ~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~ 500 (588)
+.++....+...+++..+..++++.|.++ | +.+.. ..++|+.+.+.+. -....+.+.|.++
T Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-------g---~~~~~-----~~s~Ii~v~~g~~----~~a~~~~~~L~~~ 340 (383)
T d1bs0a_ 280 AVIRSDEGDARREKLAALITRFRAGVQDL-------P---FTLAD-----SCSAIQPLIVGDN----SRALQLAEKLRQQ 340 (383)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHTTS-------S---CEECS-----CCSSBCCEEEESH----HHHHHHHHHHHHT
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhc-------C---CccCC-----CCCCEEEEEECCH----HHHHHHHHHHHHC
Confidence 87776556788888999999999999886 2 33332 2357777777652 1234567777889
Q ss_pred CcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 501 NISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 501 gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
||.+.+..+ |- . ..|.+.||++++.++|+||||+++++|..
T Consensus 341 Gi~v~~~~~--Pt-------------V--------p~g~~~lRi~~~a~ht~edid~l~~~L~~ 381 (383)
T d1bs0a_ 341 GCWVTAIRP--PT-------------V--------PAGTARLRLTLTAAHEMQDIDRLLEVLHG 381 (383)
T ss_dssp TEECCEECT--TS-------------S--------CTTCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred CceEEEEcC--CC-------------C--------CCCCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence 999875421 10 0 13445899999999999999999999875
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=4.4e-19 Score=183.33 Aligned_cols=308 Identities=13% Similarity=0.085 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
++.+.+.+.+.+.+|.+.+..+|++|+|+++++.+++.++ +++||+|++....+.+. ...++..|.+++.++.+.
T Consensus 39 ~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~P~y~~~----~~~~~~~g~~~~~v~~~~ 113 (361)
T d1d2fa_ 39 EFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQW-SETGEGVVIHTPAYDAF----YKAIEGNQRTVMPVALEK 113 (361)
T ss_dssp HHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHS-SCTTCEEEEEESCCHHH----HHHHHHTTCEEEEEECEE
T ss_pred HHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhc-cccccccccccccccch----hHHHHhhcceEEeecccc
Confidence 4455555555566576544446999999999999999999 89999977554444322 344566799998887752
Q ss_pred --CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHH---HH-HHHHHcCcEEEEeCCCcC----CCCCC
Q 037063 259 --PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYM---WM-SVAAEKGWHVLLDATALG----SKDMD 328 (588)
Q Consensus 259 --~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~---~I-~~a~~~g~~vvvDaa~~~----~~d~~ 328 (588)
+++.+|.+++++.+.+ ++++++++++++||||..++.+ +| ++|+++|+++|+|.+... +....
T Consensus 114 ~~~~~~~d~~~~~~~~~~-------~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~ 186 (361)
T d1d2fa_ 114 QADGWFCDMGKLEAVLAK-------PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHI 186 (361)
T ss_dssp CSSSEECCHHHHHHHHTS-------TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCC
T ss_pred cccccccccccchhhccc-------CCceeEEecccccccccccchhhhhhhhhhhhhhheeeeeccccccccccccccc
Confidence 3345899999999862 6899999999999999999954 56 889999999999998432 10011
Q ss_pred CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchh-cccCCCCCCCceEeeecCCCcccccccccccccccCCCCCc
Q 037063 329 TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSAS-VLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~-~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~ 407 (588)
.+..-...-.+++.|+.|.+|.+..++|++++...... ......... . ..++++.
T Consensus 187 ~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~-----------------------~-~~~~~~~ 242 (361)
T d1d2fa_ 187 PWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGR-----------------------D-GLSSPSV 242 (361)
T ss_dssp CGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTT-----------------------S-CCCSCCH
T ss_pred ccccccccccccccccccccccccccceeeecchhHHHHHHhhhcccc-----------------------c-ccccchh
Confidence 11000111346778999977753457898887754321 111000000 0 0111221
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE-EEeecCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA-FNVFDWNGT 486 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~-f~~~~~~g~ 486 (588)
... .+...+++..... .+......++.++++.+.+.+. .+++.+..| .|+... +.+...
T Consensus 243 ~~~---~a~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~--------~~~~~~~~p-----~gg~~~~~~l~~~--- 302 (361)
T d1d2fa_ 243 LAL---TAHIAAYQQGAPW-LDALRIYLKDNLTYIADKMNAA--------FPELNWQIP-----QSTYLAWLDLRPL--- 302 (361)
T ss_dssp HHH---HHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHH--------CSSCCCCCC-----SBCSEEEEECGGG---
T ss_pred hhH---HHHHHHhhccchh-hhcccccchhhHHHHHHHhhhh--------ccccccccc-----CceeEEEEEccCC---
Confidence 111 2222233322221 3344444445555555665553 234444433 344443 344321
Q ss_pred CcCHHHHH-HHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 487 RIDPALVQ-KLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 487 ~i~~~~v~-~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
.++...+. ++++++||.+.+|..+.. .|.++||+|++ .+.|++++.++.|+++
T Consensus 303 ~~~~~~~~~~Ll~~~gv~v~pG~~F~~------------------------~~~~~vRis~~--~~~e~l~~al~rl~~~ 356 (361)
T d1d2fa_ 303 NIDDNALQKALIEQEKVAIMPGYTYGE------------------------EGRGFVRLNAG--CPRSKLEKGVAGLINA 356 (361)
T ss_dssp CCCHHHHHHHHHHTTCEECEEGGGGCG------------------------GGTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCEEEEeccccCC------------------------CCCCEEEEEEc--CCHHHHHHHHHHHHHH
Confidence 15566654 567888999998854310 22338999986 5789999999999888
Q ss_pred hhh
Q 037063 566 LDA 568 (588)
Q Consensus 566 l~~ 568 (588)
+++
T Consensus 357 l~~ 359 (361)
T d1d2fa_ 357 IRA 359 (361)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.85 E-value=8.2e-20 Score=189.69 Aligned_cols=335 Identities=9% Similarity=-0.016 Sum_probs=209.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
+..+++.++++++++|.+ | +++++|+|.|+.+++.++.+++||+|+ ..+.|++... .....|++++++++
T Consensus 30 G~~v~~~E~~la~~~g~~---~-ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~-----ai~~~g~~pv~~d~ 100 (376)
T d1mdoa_ 30 GPKNQELEAAFCRLTGNQ---Y-AVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLN-----MIVLLGANPVMVDV 100 (376)
T ss_dssp SHHHHHHHHHHHHHHCCS---E-EEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHH-----HHHHTTCEEEEECB
T ss_pred CHHHHHHHHHHHHHHCcC---e-EEEeCCHHHHHHHHHHHhCCCCCCEEEEeccccccccc-----chhccccceeeecc
Confidence 456789999999999984 2 788899999999999999999999965 6777776322 23457999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLGLSLF 335 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~l~~~ 335 (588)
+..++.+|+++|+++|+ ++|++|+++| ..|...|+++| ++|+++|++||+|+||+.+...........
T Consensus 101 ~~~~~~~d~~~l~~~i~--------~~tkaIi~~h---~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~ 169 (376)
T d1mdoa_ 101 DRDTLMVTPEHIEAAIT--------PQTKAIIPVH---YAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGAR 169 (376)
T ss_dssp CTTTCCBCHHHHHHHCC--------TTEEEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSS
T ss_pred cccccCCCHHHHHHhcC--------CCCeEEEEeC---CCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeecccc
Confidence 97788999999999998 7899999876 48999999999 999999999999999998722222112222
Q ss_pred CCcEEEeccCccCCCCCCceEEEEEeCcch-hcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHH
Q 037063 336 KPDFLICSFYKIFGENPSGFGCLFVKKSSA-SVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKL 414 (588)
Q Consensus 336 ~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~-~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~ 414 (588)
...++.+..+|.++. + +.|+++.+++.+ ++++..... |........... .... .. .+...|......- .
T Consensus 170 g~~~~Sf~~~K~l~~-g-~GG~i~t~~~~l~~~~~~~~~~--g~~~~~~~~~~~-~~~~-~~-~~~~~g~n~~~~~---~ 239 (376)
T d1mdoa_ 170 GTAIFSFHAIKNITC-A-EGGIVVTDNPQFADKLRSLKFH--GLGVDAWDRQSG-GRAP-QA-EVLAPGYKYNLPD---L 239 (376)
T ss_dssp SEEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHTBT--TEECC-------------CC-EESSCCCBCCCCH---H
T ss_pred cCccccCCCcCCCCC-C-CCCEEEEechhHHHHHHhhccc--CCcccccccccc-cccc-cc-cchhcccccccch---h
Confidence 233333444587773 3 447777777543 444433322 111100000000 0000 00 1112232222211 1
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc-ccEEEEEeecCCCCCcCHHHH
Q 037063 415 VECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR-GPSLAFNVFDWNGTRIDPALV 493 (588)
Q Consensus 415 al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r-g~iv~f~~~~~~g~~i~~~~v 493 (588)
....++..+.. ++.+.++.+.+++++.+.|+++ +.+.+..+...... ...+.+.+.... ...+.+.+
T Consensus 240 ~Aai~~~qL~~--~~~~~~~r~~~~~~~~~~L~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Rd~l 307 (376)
T d1mdoa_ 240 NAAIALAQLQK--LDALNARRAAIAAQYHQAMADL---------PFQPLSLPSWEHIHAWHLFIIRVDEAR-CGITRDAL 307 (376)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTS---------SCEECCCCSSCEECCCSCEEEECCHHH-HSSCHHHH
T ss_pred hhhhhhhhhhh--hhHHHHHHhhhhhhhhhhcccc---------ccccccccccccccccccccccccccc-chhhHHHH
Confidence 11234444444 5888889999999999999985 44544433221111 122233322100 01345678
Q ss_pred HHHHHhCCcEeccccccCcccccchHH-------HHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 494 QKLADRHNISLSCGFLQNIFFSGEYEQ-------ERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 494 ~~~l~~~gI~v~~G~~c~~~~~~~~~~-------~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
.+.|.++||.++......+. ...+.. ..+..+.. ..|.+.++...|.+||+++++.|++++
T Consensus 308 ~~~L~~~gI~~~~~y~~~~~-~~~~~~~~~~~~~p~a~~~~~-----------~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 308 MASLKTKGIGTGLHFRAAHT-QKYYRERFPTLTLPDTEWNSE-----------RICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp HHHHHHTTBCCBCCCCCGGG-SHHHHHHSTTCCCHHHHHHHT-----------TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCeeeECcchhc-CHHHHhhCCCCCCHHHHHHHh-----------CEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 88999999998765321100 000000 01111221 179999999999999999999999975
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.85 E-value=8.9e-20 Score=190.41 Aligned_cols=299 Identities=12% Similarity=0.104 Sum_probs=193.8
Q ss_pred HHHHHHHHHhC----C-CCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 183 KIRKRIMDFMN----I-SEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 183 ~~r~~ia~~lg----a-~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++|+.|+++++ . ...+.+|++|+|+++++.+++.++ .++||+|++....+... ...++..|++++.++.+
T Consensus 66 ~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l-~~~gd~vlv~~P~y~~~----~~~~~~~g~~~~~~~~~ 140 (388)
T d1gdea_ 66 ELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAF-LKDGEEVLIPTPAFVSY----APAVILAGGKPVEVPTY 140 (388)
T ss_dssp HHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTT-CCTTCEEEEEESCCTTH----HHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHh-cCCCCEEEECCCCcHHH----HHHHHHcCCEEEEeecc
Confidence 56777776652 2 112235999999999999999999 89999977655444322 33456679999999986
Q ss_pred CC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC--C--C---
Q 037063 258 WP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG--S--K--- 325 (588)
Q Consensus 258 ~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~--~--~--- 325 (588)
.. +..+|+++|++.++ ++++++++++++||||..++.++ | ++|++++++||+|.+..- . .
T Consensus 141 ~~~~~~~d~~~l~~~~~--------~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~ 212 (388)
T d1gdea_ 141 EEDEFRLNVDELKKYVT--------DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHY 212 (388)
T ss_dssp GGGTTCCCHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCC
T ss_pred cccCCCCCHHHHHHhCc--------cCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCC
Confidence 43 34789999999887 78999999999999999999776 4 678999999999998331 1 0
Q ss_pred CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 326 DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 326 d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
.+..++. .....+++.|++|.||.+...+|+++..++.+..+....... ..+++
T Consensus 213 ~~~~~~~-~~~~~i~~~S~SK~~~~~GlR~G~ii~~~~~~~~~~~~~~~~-------------------------~~~~~ 266 (388)
T d1gdea_ 213 SIASLDG-MFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYN-------------------------ATCPV 266 (388)
T ss_dssp CGGGSTT-CGGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTT-------------------------TCSCC
T ss_pred ChhhccC-CCCeEEEEeCChhhccCccccEEEEEeeccchhhhhhccccc-------------------------ccccc
Confidence 1111110 112358889999998853466999999988776554322110 00111
Q ss_pred CccchhhHHHHHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE-EEeec
Q 037063 406 SISGVSSKLVECKGLDH--ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA-FNVFD 482 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~--l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~-f~~~~ 482 (588)
.+.+ .+...+++. ..+. ++...++..+....+.+.|... + +.... ..|+... +.+.+
T Consensus 267 ~~~~----~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~-------~---~~~~~-----p~gg~fl~~~l~~ 326 (388)
T d1gdea_ 267 TFIQ----YAAAKALKDERSWKA-VEEMRKEYDRRRKLVWKRLNEM-------G---LPTVK-----PKGAFYIFPRIRD 326 (388)
T ss_dssp HHHH----HHHHHHHTCHHHHHH-HHHHHHHHHHHHHHHHHHHHHT-------T---CCCCC-----CCBTTEECCBCGG
T ss_pred ccch----hhHHHHHhhccchhH-HHHHHHHHHHhhhhhhhhhhhc-------c---ccccC-----CCceEEEEEECCC
Confidence 1111 122233321 1111 3445555566667777777764 1 22222 2344433 33432
Q ss_pred CCCCCcCHHHH-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHH
Q 037063 483 WNGTRIDPALV-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAF 561 (588)
Q Consensus 483 ~~g~~i~~~~v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~ 561 (588)
...+...+ .+++++.||.+.+|..+.. .+.+++|+|++ ++.|+++..++.
T Consensus 327 ---~~~~~~~~~~~ll~e~gV~v~PG~~F~~------------------------~~~~~iRis~~--~~~e~l~~al~r 377 (388)
T d1gdea_ 327 ---TGLTSKKFSELMLKEARVAVVPGSAFGK------------------------AGEGYVRISYA--TAYEKLEEAMDR 377 (388)
T ss_dssp ---GTCCHHHHHHHHHHHTCEECEEGGGGCG------------------------GGTTBEEEECC--SCHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHhCCEEEEechhhCC------------------------CCCCEEEEEec--CCHHHHHHHHHH
Confidence 11445554 5677889999999865421 11238999987 588999999999
Q ss_pred HHHhhhhh
Q 037063 562 VSRFLDAD 569 (588)
Q Consensus 562 l~~~l~~~ 569 (588)
|+++|++.
T Consensus 378 L~~~l~e~ 385 (388)
T d1gdea_ 378 MERVLKER 385 (388)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99988764
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=1.7e-19 Score=188.07 Aligned_cols=294 Identities=13% Similarity=0.099 Sum_probs=189.8
Q ss_pred HHHHHHHHHh----CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 183 KIRKRIMDFM----NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 183 ~~r~~ia~~l----ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
++|+.|++++ |.+-+..+|++|+|+++|+.+++.++ .++||.|++....+.+. ...++..|++++.++.+.
T Consensus 72 ~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~vl~~~P~y~~~----~~~~~~~g~~~~~v~~~~ 146 (382)
T d1b5pa_ 72 ELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAI-LDPGDEVIVLSPYWVSY----PEMVRFAGGVVVEVETLP 146 (382)
T ss_dssp HHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTHH----HHHHHHTTCEEEEEECCG
T ss_pred HHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHh-CCCCCEEEECCCCcHHH----HHHHHHhcCeEEEEeccc
Confidence 4555665554 44333335999999999999999999 89999987655544422 345567899999998763
Q ss_pred C-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcC----CCCCCC
Q 037063 259 P-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALG----SKDMDT 329 (588)
Q Consensus 259 ~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~----~~d~~~ 329 (588)
. +..+|.+++++.++ +++++++++.++||||..++.+++ ++|+++|++||.|.+..- +....+
T Consensus 147 ~~~~~~d~~~l~~~~~--------~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 218 (382)
T d1b5pa_ 147 EEGFVPDPERVRRAIT--------PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP 218 (382)
T ss_dssp GGTTCCCHHHHHTTCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCG
T ss_pred ccccCCCHHHHHHhCC--------CCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCH
Confidence 2 34679999988877 789999999999999999997774 678999999999998432 111111
Q ss_pred CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 330 LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 330 l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
.... ..-.+++.|+.|.||.+..++|+++++++.++.+....... ..+++....
T Consensus 219 ~~~~-~~~~i~~~s~SK~~~~~GlR~G~~~~~~~~i~~~~~~~~~~-------------------------~~~~~~~~~ 272 (382)
T d1b5pa_ 219 GRVA-PEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQS-------------------------TTSPDTIAQ 272 (382)
T ss_dssp GGTC-TTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTT-------------------------TCSCCHHHH
T ss_pred HHcC-CCCEEEEecchhhccCcHhheEEEEECHHHHHHHHHHHHhc-------------------------ccCcccccc
Confidence 1111 12357888999999863356999999888776543221100 000111111
Q ss_pred hhhHHHHHHHHH---HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE-EEEEeecCCC
Q 037063 410 VSSKLVECKGLD---HADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS-LAFNVFDWNG 485 (588)
Q Consensus 410 ~~~~~al~~aL~---~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i-v~f~~~~~~g 485 (588)
.+...++. ..... ++...++.+..++.+.+.+.++ ++++..| .|+. +-+.+...
T Consensus 273 ----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~----------g~~~~~p-----~gg~~~~~~~~~~-- 330 (382)
T d1b5pa_ 273 ----WATLEALTNQEASRAF-VEMAREAYRRRRDLLLEGLTAL----------GLKAVRP-----SGAFYVLMDTSPI-- 330 (382)
T ss_dssp ----HHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH----------TCCBCCC-----SBTTEEEEECTTT--
T ss_pred ----cccccccccccchhHH-HHHHHHHHHhhhhHHHHHHhhc----------CCeEecC-----CceEEEeEeCCCC--
Confidence 11111221 11111 3445555566667777777764 2333322 3444 33344332
Q ss_pred CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 486 TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 486 ~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
..+...+.+.|.++||.+.+|... .+.+++|++++ ++.|+++..++.|+++
T Consensus 331 -~~~~~~~~~~l~e~gV~v~PG~~F--------------------------~~~~~iRis~~--~~~e~l~~al~rl~~~ 381 (382)
T d1b5pa_ 331 -APDEVRAAERLLEAGVAVVPGTDF--------------------------AAFGHVRLSYA--TSEENLRKALERFARV 381 (382)
T ss_dssp -CSSHHHHHHHHHHTTEECEESGGG--------------------------TCTTEEEEECC--SCHHHHHHHHHHGGGG
T ss_pred -CCCHHHHHHHHHHCCEEEEeCccc--------------------------CCCCeEEEEEc--CCHHHHHHHHHHHHHh
Confidence 245677778888899999998543 11238999986 4789999988888776
Q ss_pred h
Q 037063 566 L 566 (588)
Q Consensus 566 l 566 (588)
|
T Consensus 382 L 382 (382)
T d1b5pa_ 382 L 382 (382)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=2.3e-18 Score=180.58 Aligned_cols=343 Identities=10% Similarity=0.054 Sum_probs=231.9
Q ss_pred CCeeeecCCCC---CCC-CHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHH
Q 037063 110 NNYVCFDYIGH---GLF-SYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIR 185 (588)
Q Consensus 110 ~~~vyLD~a~~---gl~-~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r 185 (588)
+++-|+|.++. |+- .+.++++..+.+.. ++.. + ..++...|. .+..+++.
T Consensus 43 dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~--~g~~-~---------------------~~sr~~~g~--~~~~~~lE 96 (401)
T d1fc4a_ 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDS--HGFG-M---------------------ASVRFICGT--QDSHKELE 96 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHH--HCSC-C---------------------CSCHHHHCC--BHHHHHHH
T ss_pred CCCEEEEEEccccccccCCHHHHHHHHHHHHH--hCCC-c---------------------ccceeeccC--cHHHHHHH
Confidence 35668998874 444 45677776655533 2211 1 112222233 57778999
Q ss_pred HHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCH
Q 037063 186 KRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHS 265 (588)
Q Consensus 186 ~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~ 265 (588)
+.+++++|.+ .++++++++.|...++.++ .+++|.|+.+...|..... -+...++++..++. .|.
T Consensus 97 ~~lA~~~g~e----~al~~~SG~~An~~~i~~l-~~~~d~i~~d~~~h~s~~~----G~~~~~a~~~~~~~------~d~ 161 (401)
T d1fc4a_ 97 QKLAAFLGME----DAILYSSCFDANGGLFETL-LGAEDAIISDALNHASIID----GVRLCKAKRYRYAN------NDM 161 (401)
T ss_dssp HHHHHHHTCS----EEEEESCHHHHHHTTHHHH-CCTTCEEEEETTCCHHHHH----HHHTSCSEEEEECT------TCH
T ss_pred HHHHHhhcCC----ceEEecchhhhhHHHHHHh-cCCCcEEEeCCcchHHHHc----cccccCceEEEEcC------CCh
Confidence 9999999983 3889999999999888888 7889998877666653433 34566888877654 367
Q ss_pred HHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCC-------CCCCCCCCCCC
Q 037063 266 GKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKD-------MDTLGLSLFKP 337 (588)
Q Consensus 266 e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d-------~~~l~l~~~~~ 337 (588)
+++++++... +.....+.+|++.++.++.|.+.|+++| ++|+++|+.+++|.++.++.- ....++ ...+
T Consensus 162 ~~le~~~~~~--~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~-~~~~ 238 (401)
T d1fc4a_ 162 QELEARLKEA--REAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDV-MGRV 238 (401)
T ss_dssp HHHHHHHHHH--HHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTC-TTCC
T ss_pred HHHHHHHHHh--hhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccC-CCCC
Confidence 7888777631 2233567899999999999999999999 999999999999999888620 011222 1248
Q ss_pred cEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHH
Q 037063 338 DFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVEC 417 (588)
Q Consensus 338 D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~ 417 (588)
|++++++.|.+|. + +.|++..++++++.++....+ . .| ....+... .++..
T Consensus 239 dii~~tl~Ka~gg-~-~Gg~v~g~~~~~~~l~~~~~~---~-------------------~~--s~~l~p~~---~~aa~ 289 (401)
T d1fc4a_ 239 DIITGTLGKALGG-A-SGGYTAARKEVVEWLRQRSRP---Y-------------------LF--SNSLAPAI---VAASI 289 (401)
T ss_dssp SEEEEESSSTTCS-S-SCEEEEECHHHHHHHHHHCHH---H-------------------HH--SCCCCHHH---HHHHH
T ss_pred eEEEeeccccccc-C-CcccccCCHHHHHHHHcCChh---h-------------------hh--cCCCCHHH---HHHHH
Confidence 9999999998862 3 358888888887766432211 0 11 01111111 24445
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHH
Q 037063 418 KGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLA 497 (588)
Q Consensus 418 ~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l 497 (588)
.+++.+.+ .+.+.+++.++.+++++.+.+. |. .+.+ ..++|+.+.+.+. .....+.+.|
T Consensus 290 ~~l~~~~~--~~~~~~~l~~~~~~~~~~l~~~-------g~---~~~~-----~~~pIv~v~~~~~----~~a~~~~~~L 348 (401)
T d1fc4a_ 290 KVLEMVEA--GSELRDRLWANARQFREQMSAA-------GF---TLAG-----ADHAIIPVMLGDA----VVAQKFAREL 348 (401)
T ss_dssp HHHHHHHT--CHHHHHHHHHHHHHHHHHHHHT-------TC---CBCC-----SSSSEEEEEEECH----HHHHHHHHHH
T ss_pred hhhccccc--CHHHHHHHHHHHHHHHhhhccc-------CC---ccCC-----CCCCEEEEEECCH----HHHHHHHHHH
Confidence 66666555 3778899999999999999985 22 2222 3468888877652 1233566777
Q ss_pred HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q 037063 498 DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 498 ~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~~ 569 (588)
.++||.+.+-.. |.. ..|.+.||++++..+|.||||+++++|+++.++.
T Consensus 349 ~~~Gi~v~~i~~--PtV---------------------p~g~~~lRi~~~a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 349 QKEGIYVTGFFY--PVV---------------------PKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp HHTTEECCEECT--TSS---------------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHCCceEEeECC--CCC---------------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 888998764211 100 1334479999999999999999999999986653
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.82 E-value=5.7e-19 Score=183.94 Aligned_cols=297 Identities=11% Similarity=0.040 Sum_probs=201.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.++.++++++||+|+|.+ ..++|.+ +..|...++.++. .++++.|+.+..+|+....+ ++..+++++..+.
T Consensus 89 ~~~h~~LE~~lA~~~g~e---~all~~s-G~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g----~~ls~a~~~~f~H 160 (396)
T d2bwna1 89 TAYHRRLEAEIAGLHQKE---AALVFSS-AYNANDATLSTLRVLFPGLIIYSDSLNHASMIEG----IKRNAGPKRIFRH 160 (396)
T ss_dssp BHHHHHHHHHHHHHTTCS---EEEEESC-HHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHH----HHHSCCCEEEECT
T ss_pred chHHHHHHHHHHHHhCCC---ceeeeec-chHHHHHHHHHHhcccCCCceeehhhhhhccchh----hhccccCceEeec
Confidence 578889999999999994 2355544 5455445555542 35677788888777644444 4567888888765
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCC-------CC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKD-------MD 328 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d-------~~ 328 (588)
+ |.+++++++. ...+.++++|++..+.+++|.+.|+++| ++++++|+.++||.||.+++- ..
T Consensus 161 n------d~~~l~~l~~----~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~ 230 (396)
T d2bwna1 161 N------DVAHLRELIA----ADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAE 230 (396)
T ss_dssp T------CHHHHHHHHH----HSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHH
T ss_pred c------hHHHhhhHHh----hhcccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchh
Confidence 4 6788888776 3334677899999999999999999999 999999999999999988730 01
Q ss_pred CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 329 TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
.+++. ..+|++++|+.|.||. . .|++..+++.++.++....+ . .| .+.++..
T Consensus 231 ~~~~~-~~~di~~gTlsKa~g~--~-Gg~v~~~~~~i~~l~~~~~~---~-------------------if--Stalpp~ 282 (396)
T d2bwna1 231 RDGLM-HRIDIFNGTLAKAYGV--F-GGYIAASARMVDAVRSYAPG---F-------------------IF--STSLPPA 282 (396)
T ss_dssp HHTCG-GGCSEEEEESSSTTCS--C-CEEEEECHHHHHHHHHHCHH---H-------------------HT--SBCCCHH
T ss_pred hcCCc-eeeeeeeecccccccc--c-ccccchhHHHHHHHHhhcch---h-------------------hh--cccCcHH
Confidence 12222 3479999999999993 3 37888888887766532211 0 22 1111222
Q ss_pred chhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 409 GVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
. .++..++++.+.+...+..+++...+.+++++.|.++ |.+ +.. ..++|+.+.+.+..
T Consensus 283 ~---~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~-------g~~---~~~-----~~spIvpv~ig~~~---- 340 (396)
T d2bwna1 283 I---AAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-------GMP---IID-----HGSHIVPVVIGDPV---- 340 (396)
T ss_dssp H---HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-------TCC---BCC-----CSSSCEEEECCCHH----
T ss_pred H---HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc-------CCC---cCC-----CCCCEEEEEeCCHH----
Confidence 2 2455567776654323555677778889999999886 332 221 34689988876521
Q ss_pred CHHHH-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 489 DPALV-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 489 ~~~~v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
....+ .++|+++||.+.+... |. . ..|...||++++..+|.|||++++++|+++
T Consensus 341 ~~~~~a~~lL~e~Gi~v~~i~~--Pt-------------V--------p~g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 341 HTKAVSDMLLSDYGVYVQPINF--PT-------------V--------PRGTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp HHHHHHHHHHHHHCEECCEECT--TT-------------S--------CTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEEEECC--Cc-------------C--------CCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 12233 3457788998865321 10 0 133448999999999999999999998863
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.82 E-value=8.8e-19 Score=185.70 Aligned_cols=312 Identities=13% Similarity=0.077 Sum_probs=195.4
Q ss_pred HHHHHHHHHhC--------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEE
Q 037063 183 KIRKRIMDFMN--------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 183 ~~r~~ia~~lg--------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
++|+.||++++ ++|+ +|++|+|+|+|+.+++.++ .++||+|++....+...... +....|++++.+
T Consensus 88 ~LR~aiA~~l~~~~~~~~~~~pe--~I~it~G~~~al~~~~~~l-~~pGd~Vlv~~P~y~~~~~~---~~~~~g~~~v~v 161 (431)
T d1m7ya_ 88 AFKKAMVDFMAEIRGNKVTFDPN--HLVLTAGATSANETFIFCL-ADPGEAVLIPTPYYPGFDRD---LKWRTGVEIVPI 161 (431)
T ss_dssp HHHHHHHHHHHHHTTTSSCCCGG--GEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCTTHHHH---TTTTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcc--eEEECCCHHHHHHHHHHHh-cCCCCEEEEeCCCchhHHHH---HHHhcCceeccc
Confidence 57777776653 3444 4999999999999999999 89999977654443322222 222458999999
Q ss_pred eccCCC-CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC----C-
Q 037063 255 EFAWPN-LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG----S- 324 (588)
Q Consensus 255 ~~~~~~-~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~----~- 324 (588)
+++..+ ..++.+.+++.+.+. .....+++++++++++||||..++.++ | ++|+++|++||+|.+... +
T Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~ 239 (431)
T d1m7ya_ 162 HCTSSNGFQITETALEEAYQEA--EKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP 239 (431)
T ss_dssp ECCGGGTSCCCHHHHHHHHHHH--HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS
T ss_pred cccchhcccccHHHhhhhhhhh--hhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCC
Confidence 887433 468999999888731 233467999999999999999999665 4 778999999999998432 1
Q ss_pred --CCC----CCCCCC----CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 325 --KDM----DTLGLS----LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 325 --~d~----~~l~l~----~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
.++ ...... ...--+++.|+.|.||.+...+|+++.+++.+.........
T Consensus 240 ~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~-------------------- 299 (431)
T d1m7ya_ 240 SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS-------------------- 299 (431)
T ss_dssp CCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGG--------------------
T ss_pred CCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHHHhc--------------------
Confidence 000 000000 00112678899999986446699999988765432211100
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
..++.+.... .+++.....+..++. +.+..++.++..+.+.+.|.+. ++.++.| .++
T Consensus 300 ------~~~~~~~~~~-~~~a~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~----------gi~~~~p-----~gg 356 (431)
T d1m7ya_ 300 ------FGLVSSQTQH-LLSAMLSDKKLTKNY-IAENHKRLKQRQKKLVSGLQKS----------GISCLNG-----NAG 356 (431)
T ss_dssp ------GSCCCHHHHH-HHHHHHHCHHHHHHH-HHHHHHHHHHHHHHHHHHHHTT----------TCEECCC-----CSS
T ss_pred ------cccccccccc-hhhhhhccchhhhhh-hhhhhhhhhhhhhhhhhhhhcC----------CcEEecC-----Cce
Confidence 0011111111 011111222233332 4556666777777888888763 4666544 344
Q ss_pred EEE-EEeecC-CCCCc-C-HHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC
Q 037063 475 SLA-FNVFDW-NGTRI-D-PALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT 550 (588)
Q Consensus 475 iv~-f~~~~~-~g~~i-~-~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~ 550 (588)
... +.+... ..... + .+.+.+++++.||.+.+|..|.. .+.+++|+|++. .
T Consensus 357 ~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~------------------------~~~~~~Ri~~a~-~ 411 (431)
T d1m7ya_ 357 LFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHC------------------------TEPGWFRVCFAN-L 411 (431)
T ss_dssp SEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC------------------------SSTTEEEEECSS-S
T ss_pred eEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCC------------------------CCCCEEEEEeCc-C
Confidence 433 344331 11111 1 23356788889999999876531 122389999863 3
Q ss_pred CHHHHHHHHHHHHHhhhhhh
Q 037063 551 NFEDTYRLWAFVSRFLDADF 570 (588)
Q Consensus 551 t~eDv~~li~~l~~~l~~~~ 570 (588)
++++++..++.|++++++.|
T Consensus 412 ~e~~l~~al~rL~~~l~~~~ 431 (431)
T d1m7ya_ 412 PERTLDLAMQRLKAFVGEYY 431 (431)
T ss_dssp CHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 56889999999999988753
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=1.2e-19 Score=192.95 Aligned_cols=333 Identities=10% Similarity=-0.006 Sum_probs=206.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHH-HHHhCC--CCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKL-LAESYP--FYSNPRLLTV-YDHENEAAALMIESSKKRGARVSS 253 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~l-v~~s~~--~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~ 253 (588)
..++.++.+.+++++|.+.. ...++|+++|++..+ ++.+.. ..++++|+++ ..|.+ . ...+...|++.+.
T Consensus 93 ~~le~~~~~~~~~l~g~~~~-~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s-~----~~a~~~~g~~~~~ 166 (445)
T d3bc8a1 93 NKITNSLVLNVIKLAGVHSV-ASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKS-C----FKSMVTAGFEPVV 166 (445)
T ss_dssp HHHHHHHHHHHHHHHTCTTC-CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHH-H----HHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcc-cCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHH-H----HHHHHHcCCeeEE
Confidence 46777788899999999754 458888888865443 333321 2345666654 45554 3 2345667999888
Q ss_pred Eec--cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCC----
Q 037063 254 AEF--AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKD---- 326 (588)
Q Consensus 254 v~~--~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d---- 326 (588)
|+. +.+++.+|+++|+++|.+ ...+++.+|+++++++++|...|+++| ++|+++|+++++|+|+.++..
T Consensus 167 v~~~~~~~~~~id~~~l~~~i~~----~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~ 242 (445)
T d3bc8a1 167 IENVLEGDELRTDLKAVEAKIQE----LGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMH 242 (445)
T ss_dssp ECCEEETTEEECCHHHHHHHHHH----HCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHH
T ss_pred EEeeccCcccccCHHHHHHHHHh----ccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccc
Confidence 863 226789999999999972 223578999999999999999999999 999999999999999766410
Q ss_pred CCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcch-hcccCCCCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 327 MDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSA-SVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 327 ~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~-~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
....+.....+|++++|+||+++. |.|.|++++++... +.+...+.++ ..+++
T Consensus 243 ~~~~~~~~~~vd~~~~s~hK~~~~-p~g~~~l~~~~~~~~~~~~~~~~~~-------------------------~~~~~ 296 (445)
T d3bc8a1 243 LIQQGARVGRIDAFVQSLDKNFMV-PVGGAIIAGFNEPFIQDISKMYPGR-------------------------ASASP 296 (445)
T ss_dssp HHHHHHHHSCCCEEEEEHHHHHSC-CSSCEEEEESCHHHHHHHHHHSCSC-------------------------BCSHH
T ss_pred cchhccCcCCcceEEecCcccccc-CCCCceeeeCChHHHHHHHHHHhhc-------------------------ccCcc
Confidence 111111222489999999996664 89999999987543 3333222110 01111
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCC
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNG 485 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g 485 (588)
. ..+..++..+...|+..+.++...+++++.+.|.++... .+.++.... .......+.+....+
T Consensus 297 ~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l~~~------~~~~~l~~~---~~~~~~~~~l~~~~~ 360 (445)
T d3bc8a1 297 S-------LDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEA------HNERLLQTP---HNPISLAMTLKTIDG 360 (445)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TTCCBCCCT---TCSSEEEEECTTTSS
T ss_pred h-------HHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHhh------cCceeecCC---CCCcceEEEeeeccc
Confidence 1 223355556655567778888888888888888764210 012222211 122333344332222
Q ss_pred -CCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 486 -TRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 486 -~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
...+...+...|.+.||....++.+-.. .... ...+.. .+........+.||++++.++|.||||++++.|++
T Consensus 361 ~~~~~~~~l~~~L~~~gI~~~~~~~~~~~--~~i~---~~~~~~-~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~k 434 (445)
T d3bc8a1 361 HHDKAVTQLGSMLFTRQVSGARAVPLGNV--QTVS---GHTFRG-FMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDK 434 (445)
T ss_dssp SSSCHHHHHHHHHHHTTCCSCEEECSCCE--EEET---TEEEET-TTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHcCCCcceeeccccc--cchh---hhhhhh-cCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHH
Confidence 1234556667778888864433322110 0000 000000 00000112223799999999999999999999999
Q ss_pred hhhh
Q 037063 565 FLDA 568 (588)
Q Consensus 565 ~l~~ 568 (588)
++++
T Consensus 435 ilk~ 438 (445)
T d3bc8a1 435 CLNI 438 (445)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=6.8e-19 Score=181.99 Aligned_cols=309 Identities=15% Similarity=0.092 Sum_probs=200.3
Q ss_pred cCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEE
Q 037063 173 YGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARV 251 (588)
Q Consensus 173 ~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v 251 (588)
|++....-.+.++++|+++-|.. ..+.++++..|+..++.++ +++||+|+. ..-|.. ....+....++.|+++
T Consensus 53 Y~R~~nPT~~~LE~~la~LEg~~----~a~~~~SGmaAi~~~l~~l-~~~Gd~vl~~~~~Yg~-t~~l~~~~~~~~Gi~~ 126 (392)
T d1gc0a_ 53 YSRISNPTLNLLEARMASLEGGE----AGLALASGMGAITSTLWTL-LRPGDEVLLGNTLYGC-TFAFLHHGIGEFGVKL 126 (392)
T ss_dssp ----CCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCSH-HHHHHHHTGGGGTCEE
T ss_pred ecCCCChHHHHHHHHHHHHhCCc----ceeehhhHHHHHHHHHHhh-ccCCCeeecccccchh-hhhhhhhhhccCCccc
Confidence 44444566778999999999983 2677889999999999998 899999765 444554 6666677888899999
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCC
Q 037063 252 SSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTL 330 (588)
Q Consensus 252 ~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l 330 (588)
.+++.. |.++++++|+ ++|++|.+..++||+..+.|++.| ++||++|++++||.+-..|....++
T Consensus 127 ~~~d~~------d~~~~~~ai~--------~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl 192 (392)
T d1gc0a_ 127 RHVDMA------DLQALEAAMT--------PATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPL 192 (392)
T ss_dssp EEECTT------CHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGG
T ss_pred ccCCcc------CHHHHHHhCC--------CCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCccccChH
Confidence 998764 6789999998 899999999999999999999999 9999999999999998777445555
Q ss_pred CCCCCCCcEEEeccCccCC-CCCCceEEEEEeCcchhcccCC----CCCCCceEeeecCCCcccccccccccccccCCCC
Q 037063 331 GLSLFKPDFLICSFYKIFG-ENPSGFGCLFVKKSSASVLSGS----TSSVSTIMGIEPSFSEIIELETLDESSQSKFPES 405 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~~G-~~P~G~G~L~v~~~~~~~l~~~----~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~ 405 (588)
++ ++|+++.|..|++| .+-.-.|+++++++.+.+++.. ..| + ++
T Consensus 193 ~~---GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G--~--------------------------~~ 241 (392)
T d1gc0a_ 193 EL---GADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTG--A--------------------------VL 241 (392)
T ss_dssp GG---TCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTC--C--------------------------CC
T ss_pred Hh---CCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccC--C--------------------------cC
Confidence 43 39999999999776 2112278888888776543211 112 1 11
Q ss_pred CccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCC------------CCCCc
Q 037063 406 SISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPK------------VMFDR 472 (588)
Q Consensus 406 ~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~------------~~~~r 472 (588)
+.... ..+..+|+.+... |++..+....+++ .|++. |.| +|+-|. .....
T Consensus 242 ~p~da---~ll~rgl~TL~lR-m~~~~~nA~~lA~----~L~~h---------p~V~~V~yPgl~s~p~~~~~~~~~~~~ 304 (392)
T d1gc0a_ 242 SPHDA---ALLMRGIKTLNLR-MDRHCANAQVLAE----FLARQ---------PQVELIHYPGLASFPQYTLARQQMSQP 304 (392)
T ss_dssp CHHHH---HHHHHHHTTHHHH-HHHHHHHHHHHHH----HHHTC---------TTEEEEEEC----------------CC
T ss_pred ChhhH---HHHHhccccHHHH-HHHHHHHHHHHHH----HHHhC---------CCccEEeeccccCCcccccccccccCC
Confidence 11111 2334555544322 4444444445554 44441 333 243331 11224
Q ss_pred ccEEEEEeecCCCCCcCHHHHHHHHHhCCcE---eccccc----cCcccccchHHHHHHHHhhhcCCCCCcCCc--cEEE
Q 037063 473 GPSLAFNVFDWNGTRIDPALVQKLADRHNIS---LSCGFL----QNIFFSGEYEQERVRVLETRSGTNETRSGV--SVVT 543 (588)
Q Consensus 473 g~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~---v~~G~~----c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vR 543 (588)
|++++|.+.+ +.+.+.++++.-.+. .+-|.. |++....... ........ .|+ +.||
T Consensus 305 gg~~sf~l~~------~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~-~~~e~r~~--------~Gi~~~liR 369 (392)
T d1gc0a_ 305 GGMIAFELKG------GIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSS-YTPEERAH--------YGISEGLVR 369 (392)
T ss_dssp TTEEEEEETT------HHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSS-SCHHHHHH--------TTCCTTEEE
T ss_pred CcEEEEEEeC------CHHHHHHHHHhCCcceEeeccCCcChhhcCcccccccc-CCHHHHHH--------cCCCcCeEE
Confidence 7899999964 245566777766542 233321 2221111000 00011111 333 3999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 544 AALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 544 vSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+|+|. ||++.|++-|.+.|++
T Consensus 370 lSVGl----Ed~eDLi~Dl~~AL~a 390 (392)
T d1gc0a_ 370 LSVGL----EDIDDLLADVQQALKA 390 (392)
T ss_dssp EECCS----SCHHHHHHHHHHHHHH
T ss_pred EEeee----CCHHHHHHHHHHHHHh
Confidence 99997 8888888888887765
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.81 E-value=9.7e-19 Score=185.19 Aligned_cols=310 Identities=12% Similarity=0.071 Sum_probs=191.1
Q ss_pred HHHHHHHHHhC--------CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEE
Q 037063 183 KIRKRIMDFMN--------ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 183 ~~r~~ia~~lg--------a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
++|+.||++++ ++++ .|++|+|+++|+.+++.++ ..+||+|++...++...... +....|++++.+
T Consensus 87 ~LR~aiA~~l~~~~~~~~~~~~e--~Ivit~G~~~al~~~~~~l-~~~Gd~Vlv~~P~y~~~~~~---~~~~~g~~~v~v 160 (428)
T d1iaya_ 87 EFRKAIAKFMEKTRGGRVRFDPE--RVVMAGGATGANETIIFCL-ADPGDAFLVPSPYYPAFNRD---LRWRTGVQLIPI 160 (428)
T ss_dssp HHHHHHHHHHHHHTTTCSCCCTT--SCEEEEHHHHHHHHHHHHH-CCTTCEEEEESSCCTTHHHH---TTTTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCChh--hEEEcCCHHHHHHHHHHHh-CCCCCEEEEccCCchHHHHH---HHHhcCCeEEEe
Confidence 67777777652 3444 4999999999999999999 89999987665554323221 223458999999
Q ss_pred eccC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC----CC
Q 037063 255 EFAW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG----SK 325 (588)
Q Consensus 255 ~~~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~----~~ 325 (588)
+.+. .+..++.++++.++.. ......++++++++.++||||..++.++ | ++|+++|++||+|.+..- +.
T Consensus 161 ~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~ 238 (428)
T d1iaya_ 161 HCESSNNFKITSKAVKEAYEN--AQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP 238 (428)
T ss_dssp CCCTTTTTCCCHHHHHHHHHH--HHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS
T ss_pred ecccccccccccccccchhhh--hhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcc
Confidence 8874 3457899988877652 1234478999999999999999999655 5 789999999999998432 10
Q ss_pred CC---------CCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcch-hcccCCCCCCCceEeeecCCCccccccccc
Q 037063 326 DM---------DTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSA-SVLSGSTSSVSTIMGIEPSFSEIIELETLD 395 (588)
Q Consensus 326 d~---------~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~-~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~ 395 (588)
.. .........-.+++.|+.|.|+.+...+|+++..++.+ +.+...... +.
T Consensus 239 ~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~~--~~----------------- 299 (428)
T d1iaya_ 239 QFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSF--GL----------------- 299 (428)
T ss_dssp CCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTT--SC-----------------
T ss_pred cccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhhcc--cc-----------------
Confidence 00 00001111134788899998875345699999866543 322211100 00
Q ss_pred ccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccE
Q 037063 396 ESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPS 475 (588)
Q Consensus 396 ~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~i 475 (588)
....... .+++....-+.++.. +++..++.++..+.+.+.|+.+ ++++..| ..|..
T Consensus 300 --------~~~~~~~-~~~a~l~~~~~~~~~-~~~~~~~l~~r~~~~~~~L~~~----------gi~~~~p----~gg~f 355 (428)
T d1iaya_ 300 --------VSTQTQY-FLAAMLSDEKFVDNF-LRESAMRLGKRHKHFTNGLEVV----------GIKCLKN----NAGLF 355 (428)
T ss_dssp --------CCHHHHH-HHHHHTTCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHT----------TCCBCCC----SSSSE
T ss_pred --------ccccccc-chhhhhhhhcccccc-ccccccccchhHHHHHHHHHhC----------CCEEecC----CcceE
Confidence 0000000 001111111222222 4555666667777888888763 3444433 12334
Q ss_pred EEEEeecCCC-CCcCH--HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCH
Q 037063 476 LAFNVFDWNG-TRIDP--ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNF 552 (588)
Q Consensus 476 v~f~~~~~~g-~~i~~--~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~ 552 (588)
+-+.+...-. ..++. +...++++++||.+.+|..+.. .+.++||+|++. .++
T Consensus 356 ~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~------------------------~~~g~~Ris~a~-~~~ 410 (428)
T d1iaya_ 356 CWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFEC------------------------QEPGWFRVCFAN-MDD 410 (428)
T ss_dssp EEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC------------------------SSSSEEEEECSS-SCH
T ss_pred EEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCC------------------------CCCCEEEEEeCC-CCH
Confidence 4445543111 01111 2356677889999999865421 222399999853 466
Q ss_pred HHHHHHHHHHHHhhhh
Q 037063 553 EDTYRLWAFVSRFLDA 568 (588)
Q Consensus 553 eDv~~li~~l~~~l~~ 568 (588)
++++..++.|+++|..
T Consensus 411 ~~l~~al~Rl~~~l~~ 426 (428)
T d1iaya_ 411 GTVDIALARIRRFVGV 426 (428)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7899999999998754
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.81 E-value=1.2e-18 Score=179.60 Aligned_cols=288 Identities=11% Similarity=0.063 Sum_probs=187.3
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNL 261 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~ 261 (588)
.++|+.|++++|+++++ |++|+|+++++.++...+ .+++.++....+. .+ .......+++++.++++..++
T Consensus 60 ~~Lr~aia~~~~v~~~~--I~~~~g~~~~~~~~~~~~--~~~~~~v~~p~~~--~~---~~~~~~~~~~~~~v~~~~~~~ 130 (355)
T d1lc5a_ 60 FHLHQALARHHQVPASW--ILAGNGETESIFTVASGL--KPRRAMIVTPGFA--EY---GRALAQSGCEIRRWSLREADG 130 (355)
T ss_dssp HHHHHHHHHHHTSCGGG--EEEESSHHHHHHHHHHHH--CCSEEEEEESCCT--HH---HHHHHHTTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHhCCCHHH--EEecccHHHHHHHHHhhh--ccccccccCCccc--ee---ccccccccccceeeeeeccCC
Confidence 37899999999998765 999999999999888775 2333344333333 22 223455688999999875555
Q ss_pred ccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCc--CCCCCCCCC-CCC
Q 037063 262 RIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATAL--GSKDMDTLG-LSL 334 (588)
Q Consensus 262 ~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~--~~~d~~~l~-l~~ 334 (588)
....+++.+.+. +++++|+++.++||||..++.++ | ++|+++++++++|.+.. .+....... ...
T Consensus 131 ~~~~~~~~~~~~--------~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~ 202 (355)
T d1lc5a_ 131 WQLTDAILEALT--------PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKD 202 (355)
T ss_dssp TCCCTTHHHHCC--------TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTT
T ss_pred ccceeeeeeccc--------cccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeecccccccccc
Confidence 444456666666 78999999999999999999766 4 77889999999999843 221111111 112
Q ss_pred CCCcEEEeccCccCCCCCCceEEEEEeCcch-hcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhH
Q 037063 335 FKPDFLICSFYKIFGENPSGFGCLFVKKSSA-SVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSK 413 (588)
Q Consensus 335 ~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~-~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~ 413 (588)
..-.+++.|++|.||++...+|+++.+++.+ +.++..... + +.+..+ .
T Consensus 203 ~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~~~--~--------------------------~~~~~~---~ 251 (355)
T d1lc5a_ 203 NPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMP--W--------------------------SVNALA---A 251 (355)
T ss_dssp CTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCT--T--------------------------CSCHHH---H
T ss_pred cccceeecccccccccccccccceeccchhhhHHHHhhcCC--c--------------------------cccccc---c
Confidence 2245888899999996556799999887644 323211100 0 011111 1
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHH
Q 037063 414 LVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALV 493 (588)
Q Consensus 414 ~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v 493 (588)
.+...+|+.... +....+++++-.+++.+.|.++ ++++++ | ..+..+.+.+.. +...+
T Consensus 252 ~~a~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~-p----~~~~f~~~~~~~------~~~~~ 309 (355)
T d1lc5a_ 252 LAGEVALQDSAW--QQATWHWLREEGARFYQALCQL---------PLLTVY-P----GRANYLLLRCER------EDIDL 309 (355)
T ss_dssp HHHHHGGGCHHH--HHHHHHHHHHHHHHHHHHHHTS---------TTEEEC-C----CSSSEEEEEESC------TTCCH
T ss_pred ccccccccccch--hHHHHHHHHHHHHHHHHHHhhc---------CCcEEC-C----CCCEEEEEECCC------CHHHH
Confidence 222344433222 3455566666777888888875 567664 3 235555555543 22345
Q ss_pred HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 494 QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 494 ~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
.+.|.++||.|+.|..... .+..+||||++ +.+|+++++++|+++|
T Consensus 310 ~~~L~~~gv~vr~~~~f~~------------------------~~~~~iRis~~---~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 310 QRRLLTQRILIRSCANYPG------------------------LDSRYYRVAIR---SAAQNERLLAALRNVL 355 (355)
T ss_dssp HHHHHTTTEECEECTTSTT------------------------CCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCcEEEeCccCCC------------------------CCCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence 6667788999998743210 12239999987 7999999999999875
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.81 E-value=4.1e-18 Score=176.21 Aligned_cols=309 Identities=14% Similarity=0.096 Sum_probs=204.7
Q ss_pred cCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEE
Q 037063 173 YGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 173 ~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
|++....-.+.+.++|+++-|.. ..+.++++..|+..++.++ +++||+|+...+.+......+.....+.|+++.
T Consensus 57 Y~R~~nPT~~~LE~~la~LEgg~----~a~~~sSGmaAi~~~l~~l-l~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~ 131 (397)
T d1y4ia1 57 YTRLGNPTTDALEKKLAVLERGE----AGLATASGISAITTTLLTL-CQQGDHIVSASAIYGCTHAFLSHSMPKFGINVR 131 (397)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEE
T ss_pred eeCCCCHHHHHHHHHHHHHhCCc----cceeehHHHHHHHHHHhhc-cCCCCeeeeecccccccchhhhcccCCCceEee
Confidence 44444566778999999999883 2677788999999999898 899999876555554466666777888999999
Q ss_pred EEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCC
Q 037063 253 SAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLG 331 (588)
Q Consensus 253 ~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~ 331 (588)
+++.. |.++++++|+ ++|++|.+..++||+..+.|++.| ++||++|++++||.+-..|....++.
T Consensus 132 ~vd~~------d~~~~~~~i~--------~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~ 197 (397)
T d1y4ia1 132 FVDAG------KPEEIRAAMR--------PETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQ 197 (397)
T ss_dssp EECTT------SHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGG
T ss_pred ccCCC------CHHHHHHhcC--------CCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCcccCcchh
Confidence 98764 6789999998 899999999999999999999999 99999999999999987786566665
Q ss_pred CCCCCCcEEEeccCccCC-CCCCceEEEEEeCcchhccc--CC--CCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 332 LSLFKPDFLICSFYKIFG-ENPSGFGCLFVKKSSASVLS--GS--TSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 332 l~~~~~D~vv~S~~K~~G-~~P~G~G~L~v~~~~~~~l~--~~--~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
+ ++|+++.|..|.+| .+-.=.|+++++++.+.+++ .. ..| + .++
T Consensus 198 ~---GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G--~--------------------------~l~ 246 (397)
T d1y4ia1 198 L---GADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITG--G--------------------------CMS 246 (397)
T ss_dssp G---TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTC--C--------------------------CCC
T ss_pred c---CCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcC--C--------------------------cCC
Confidence 3 39999999999765 21222678888877665432 11 112 1 111
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCC------------CCcc
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVM------------FDRG 473 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~------------~~rg 473 (588)
.... ..+..+|+-+ ....++..+.+..+.+.|++ .|.| +|+-|.-+ ..-|
T Consensus 247 p~~a---~l~~rgl~TL-----~lRm~~~~~nA~~lA~~L~~---------hp~V~~V~yPgl~s~p~h~~~~~~~~g~g 309 (397)
T d1y4ia1 247 PFNA---WLTLRGVKTL-----GIRMERHCENALKIARFLEG---------HPSITRVYYPGLSSHPQYELGQRQMSLPG 309 (397)
T ss_dssp HHHH---HHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHT---------CTTEEEEECTTSTTCTTHHHHHHHCSSCC
T ss_pred HHHH---HHHHcCcCcH-----HHHHHHHHHHHHHHHHHHHh---------CCCcCeEeCCCCCCCccccccccccCCCC
Confidence 1111 2223555543 33334444445555555555 2445 56666321 1247
Q ss_pred cEEEEEeecCCCCCcCHHHHHHHHHhCCcEe---cccc----ccCcccc-cchHHHHHHHHhhhcCCCCCcCCc--cEEE
Q 037063 474 PSLAFNVFDWNGTRIDPALVQKLADRHNISL---SCGF----LQNIFFS-GEYEQERVRVLETRSGTNETRSGV--SVVT 543 (588)
Q Consensus 474 ~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v---~~G~----~c~~~~~-~~~~~~~~~~l~~~~~~~~~~~g~--~~vR 543 (588)
++++|.+.+ +.+...+++++..+.- +-|. .|+|... ..... ...... .|+ +.||
T Consensus 310 g~~sf~~~~------~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~--~e~r~~--------~Gi~~~liR 373 (397)
T d1y4ia1 310 GIISFEIAG------GLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVA--PEERLK--------AGITDGLIR 373 (397)
T ss_dssp SEEEEEETT------HHHHHHHHHHTCSSSEECSCCSCSSCEEECTTTTTTSSSC--HHHHHH--------TTCCTTEEE
T ss_pred eEEEEEecC------CHHHHHHHHHcCCccceeeccCcccceeeCccccccccCC--HHHHHH--------cCCCcCEEE
Confidence 899998764 1445567777765532 2222 1122110 00000 011111 333 3999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 544 AALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 544 vSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+|+|. ||++.|++-|.+.|++
T Consensus 374 lsvGl----Ed~~DLi~Dl~~AL~~ 394 (397)
T d1y4ia1 374 LSVGL----EDPEDIINDLEHAIRK 394 (397)
T ss_dssp EECCS----SCHHHHHHHHHHHHHH
T ss_pred EEecc----CCHHHHHHHHHHHHHH
Confidence 99997 8888888888887765
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=3.6e-18 Score=174.71 Aligned_cols=321 Identities=14% Similarity=0.097 Sum_probs=205.0
Q ss_pred HHhhhccCCCCCCeeeecCCCC-CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCch
Q 037063 99 IRAQDYFHLSLNNYVCFDYIGH-GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEE 177 (588)
Q Consensus 99 iR~~~f~~l~~~~~vyLD~a~~-gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~ 177 (588)
-|...|..-. ++.+||+-+-- -++|..+++++.+.+...... .|...
T Consensus 9 ~~~~~~~~~~-~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~~~------------------------------~yp~~- 56 (334)
T d2f8ja1 9 KRAYPYETEK-RDKTYLALNENPFPFPEDLVDEVFRRLNSDALR------------------------------IYYDS- 56 (334)
T ss_dssp HHSCCCCCCC-CCSEECSSCCCSSCCCHHHHHHHHHHCCTTGGG------------------------------SCCCS-
T ss_pred HhcccccccC-CCceEEECCCCCCCCCHHHHHHHHHHhhcchhc------------------------------CCCCC-
Confidence 3444454432 68999986632 366778888876555221100 00000
Q ss_pred hHHHHHHHHHHHHHhC---CCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEE
Q 037063 178 SELESKIRKRIMDFMN---ISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lg---a~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
+ ..++|+.|+++++ ++++ +|++|+|+++++.+++.. +|+|++....+... ...++..|++++.+
T Consensus 57 g--~~~Lr~aia~~~~~~~v~~d--~I~it~G~~~~l~~l~~~-----~d~v~i~~P~y~~~----~~~~~~~g~~~v~v 123 (334)
T d2f8ja1 57 P--DEELIEKILSYLDTDFLSKN--NVSVGNGADEIIYVMMLM-----FDRSVFFPPTYSCY----RIFAKAVGAKFLEV 123 (334)
T ss_dssp S--CHHHHHHHHHHHTCSSCCGG--GEEEEEHHHHHHHHHHHH-----SSEEEECSSCCHHH----HHHHHHHTCCEEEC
T ss_pred C--cHHHHHHHHHHhcccCCCcc--eEEecCcchhHHHHHhhh-----cccccccccccccc----ccchhccCCccccc
Confidence 1 1378999999986 4444 499999999999998765 48866554444322 34556679999999
Q ss_pred eccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHHHHHHHcCcEEEEeCCCcCC-CCCCCCCCC
Q 037063 255 EFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWMSVAAEKGWHVLLDATALGS-KDMDTLGLS 333 (588)
Q Consensus 255 ~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I~~a~~~g~~vvvDaa~~~~-~d~~~l~l~ 333 (588)
|++ +++.... . ..+++++++++.++||||..++.++|..++++++++++|.+..-. .........
T Consensus 124 ~~~-~~~~~~~-----~--------~~~~~~~l~l~nP~NPtG~~~s~~~l~~~~~~~~~ii~Dd~~~~~~~~~~~~~~~ 189 (334)
T d2f8ja1 124 PLT-KDLRIPE-----V--------NVGEGDVVFIPNPNNPTGHVFEREEIERILKTGAFVALDEAYYEFHGESYVDFLK 189 (334)
T ss_dssp CCC-TTSCCCC-----C--------CCCTTEEEEEESSCTTTCCCCCHHHHHHHHTTTCEEEEECTTGGGTCCCCGGGGG
T ss_pred ccc-ccccccc-----c--------ccccceEEEecccccccceeecHHHhhccccceeEEeecccchhhcccccccccc
Confidence 987 4443321 1 126789999999999999999999996667789999999874321 000111111
Q ss_pred CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhH
Q 037063 334 LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSK 413 (588)
Q Consensus 334 ~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~ 413 (588)
....-+++.|+.|.+|.+..++|+++.++++++.+...... +. .+....
T Consensus 190 ~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~~~~~--~~--------------------------~s~~~~--- 238 (334)
T d2f8ja1 190 KYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLP--FN--------------------------VSYVSQ--- 238 (334)
T ss_dssp TCSSEEEEEESTTTSSCTTTCEEEEEECHHHHHHHHHHSCT--TC--------------------------SCHHHH---
T ss_pred cCceEEEEecCccccchhhhhhhhcccchHHHHHHHHhhcc--cc--------------------------cchhhh---
Confidence 22245788899998886456799999999888766433211 00 000000
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHH
Q 037063 414 LVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALV 493 (588)
Q Consensus 414 ~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v 493 (588)
.+..+.++..+. ++...++.++-++++.+.|+++ +++++.+ .|+.+-+.+.. .+...+
T Consensus 239 ~~a~~~l~~~~~--~~~~~~~~~~~r~~l~~~L~~~----------g~~~~~~-----~g~f~~~~~~~-----~~~~~~ 296 (334)
T d2f8ja1 239 MFAKVALDHREI--FEERTKFIVEERERMKSALREM----------GYRITDS-----RGNFVFVFMEK-----EEKERL 296 (334)
T ss_dssp HHHHHHHHTHHH--HHHHHHHHHHHHHHHHHHHHHH----------TCEECCC-----CSSEEEEECCH-----HHHHHH
T ss_pred hhcccccccccc--hhhHHHHHHHHHHHHHHHHHHC----------CCeECCC-----CceEEEEECCC-----CCHHHH
Confidence 122233333222 3455566666777888888886 3556532 45655555544 345677
Q ss_pred HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 494 QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 494 ~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
.+.|.++||.|+.. .+ +||+|+| +.||+++++++|++|
T Consensus 297 ~~~L~~~GI~vr~~-----------------------------~~--~vRis~g---~~ee~~~l~~~l~~f 334 (334)
T d2f8ja1 297 LEHLRTKNVAVRSF-----------------------------RE--GVRITIG---KREENDMILRELEVF 334 (334)
T ss_dssp HHHHHHTTEECEEE-----------------------------TT--EEEEECC---CHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCEECCC-----------------------------CC--eEEEEcC---CHHHHHHHHHHHhcC
Confidence 78888899998642 12 8999987 789999999999875
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.81 E-value=6.5e-19 Score=186.77 Aligned_cols=312 Identities=10% Similarity=0.039 Sum_probs=199.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEe-cCHHHHHHHHHHhCC-CCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFT-ANQSSAFKLLAESYP-FYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft-~g~T~al~lv~~s~~-~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
..+..++...+++++|.+.. ..++ .++++++.+++.+.. ..++++|++ ...|++ .. +.+...|++.+.+
T Consensus 112 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s-~~----k~~~~~g~~~~~v 183 (434)
T d2z67a1 112 YALTNKILESFFKQLGLNVH---AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKS-PI----KAVSFVGMNMRLV 183 (434)
T ss_dssp HHHHHHHHHHHHHHTTCCCE---EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH-HH----HHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcc---eeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHH-HH----HHHHHhCCcceEE
Confidence 45556667778889998632 4444 455555555555442 225677664 455654 33 3445679888888
Q ss_pred ec--cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCC--C-
Q 037063 255 EF--AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDM--D- 328 (588)
Q Consensus 255 ~~--~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~--~- 328 (588)
+. +..++.+|+++|+++|++ .....++.+|+++.+++.+|...|+++| ++|+++|++++||+|+...... .
T Consensus 184 ~~~~~~~~~~~d~~~l~~~i~~---~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~ 260 (434)
T d2z67a1 184 ETVLDGDRVYVPVEDIENAIKK---EIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEK 260 (434)
T ss_dssp CCEEETTEEECCHHHHHHHHHH---HHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHH
T ss_pred EeecCCCccCCCHHHHHHHHHh---hhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhcccc
Confidence 64 225578999999999973 1122468899999999999999999999 9999999999999997653100 0
Q ss_pred CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcc-hhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCc
Q 037063 329 TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSS-ASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~-~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~ 407 (588)
.......++|++++|+||.++. |.|.|+++++++. ++.+.....+. .+.
T Consensus 261 ~~~~~~~~~D~~~~s~hK~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~ 310 (434)
T d2z67a1 261 LKKAFKYRVDAVVSSSDKNLLT-PIGGGLVYSTDAEFIKEISLSYPGR-----------------------------ASA 310 (434)
T ss_dssp HHHHHTSCCSEEEEEHHHHHCC-CSSCEEEEESCHHHHHHHHTTSCSC-----------------------------BCS
T ss_pred ccccccCCcceEEEcCcccccc-CCCccccccCcHHHHHHHHhhcccc-----------------------------ccc
Confidence 0000123499999999997764 8999999998753 34444433221 011
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTR 487 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~ 487 (588)
... ..+..++..+...|++.+.++..++++++.+.|+++... .+.+++.+ ..++..+...+
T Consensus 311 ~~~---~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~~------~g~~ll~~-----~~~~~~~~~~~----- 371 (434)
T d2z67a1 311 TPV---VNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKK------TGGKFLDV-----ESPIASCISVN----- 371 (434)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------SSCCBCCC-----CCSSEEEEECS-----
T ss_pred chH---HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhhh------cCceecCC-----CCCceeeeecC-----
Confidence 111 233456666666678889999999999999999875211 12333332 12222222223
Q ss_pred cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 488 IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 488 i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
.++..+...|.+.||....+... .... .. ... .......+|++++.++|.||||++++.|++
T Consensus 372 ~~~~~l~~~L~~~gI~g~~v~~~---l~~~-----g~-~~~------~~~~~~~l~~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 372 SDPVEIAAKLYNLRVTGPRGIKK---TDHF-----GN-CYL------GTYTHDYIVMNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp SCHHHHHHHHHHTTEESCEEECT---TCHH-----HH-TCS------SCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcCCeeeehhhh---cccc-----Ce-eee------cccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence 45788888888899964322110 0000 00 000 011123899999999999999999999886
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.80 E-value=2.5e-18 Score=180.13 Aligned_cols=309 Identities=14% Similarity=0.088 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
++.+.+.+.+.+..|.+.+...|++|+|+++++.+++.++ ..+||+|++....+..+ ...++..|++++.++...
T Consensus 74 ~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~-~~~Gd~vlv~~P~y~~~----~~~~~~~g~~~v~v~~~~ 148 (395)
T d1xi9a_ 74 ELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGAL-LDPGDEILVPGPSYPPY----TGLVKFYGGKPVEYRTIE 148 (395)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCHHH----HHHHHHTTCEEEEEEEEG
T ss_pred HHHHHHHHhhhhcccccccccccccccccchhhhhhhhhh-cCCCCEEEEcCCccccc----hhhhhhcCCEEEEEeccc
Confidence 4444444555555566544456999999999999999999 89999977655544322 345567899999998653
Q ss_pred -CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcC-CCC---CCC
Q 037063 259 -PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALG-SKD---MDT 329 (588)
Q Consensus 259 -~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~-~~d---~~~ 329 (588)
.+..+|.+++++.+. +++++++++.++||||..++.+++ ++|+++|++++.|.+..- ..+ ...
T Consensus 149 ~~~~~~d~~~~~~~~~--------~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 220 (395)
T d1xi9a_ 149 EEDWQPDIDDIRKKIT--------DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISP 220 (395)
T ss_dssp GGTSEECHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCH
T ss_pred cccccchHHHHHHhhc--------ccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccch
Confidence 355789999998887 789999999999999999998774 778999999999998432 111 111
Q ss_pred CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCc--chhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCc
Q 037063 330 LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKS--SASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407 (588)
Q Consensus 330 l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~--~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~ 407 (588)
..+....--+++.|+.|.||.+...+|++++... .+..+...... +. .. ..+...+
T Consensus 221 ~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~----------------~~-----~~-~~~~~~~ 278 (395)
T d1xi9a_ 221 GSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDR----------------LA-----RI-RLCPNTP 278 (395)
T ss_dssp HHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHH----------------HH-----HH-TCCSCSH
T ss_pred hhcCCCCCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHHH----------------hh-----cC-CCCcCHH
Confidence 1111111237788999988853345899887542 22212111000 00 00 0111111
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE-EEeecCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA-FNVFDWNGT 486 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~-f~~~~~~g~ 486 (588)
.+ .++..+++.-.+. +++..++.++.++++.+.|.++ +.+.+..| .|+... ..+.... .
T Consensus 279 ~q----~a~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~~---------~~~~~~~p-----~gg~~~~~~l~~~~-~ 338 (395)
T d1xi9a_ 279 AQ----FAAIAGLTGPMDY-LKEYMKKLKERRDYIYKRLNEI---------PGISTTKP-----QGAFYIFPKIEVGP-W 338 (395)
T ss_dssp HH----HHHHHHHHSCCHH-HHHHHHHHHHHHHHHHHHHHTS---------TTEECCCC-----CBSSEECCEECSCS-C
T ss_pred HH----HHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHhC---------CCceecCC-----CeeEEEeEECCCCC-C
Confidence 12 1222233211111 4556666777788888888874 45555443 344433 3443211 1
Q ss_pred CcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 487 RIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 487 ~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
..+.+.+.+++++.||.+.+|..+.. .+.+++|||++ ++.|+++..++.|+++|
T Consensus 339 ~~~~~~~~~ll~~~gV~v~PG~~Fg~------------------------~~~~~~Ris~~--~~~e~l~eal~rl~~~l 392 (395)
T d1xi9a_ 339 KNDKEFVLDVLHNAHVLFVHGSGFGE------------------------YGAGHFRAVFL--PPIEILEEAMDRFEKFM 392 (395)
T ss_dssp SSHHHHHHHHHHHHCEECEEGGGGCG------------------------GGTTBEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCEEEEcChhhCC------------------------CCCCEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 12344567888999999998854411 12238999975 58899999999999988
Q ss_pred hh
Q 037063 567 DA 568 (588)
Q Consensus 567 ~~ 568 (588)
++
T Consensus 393 ~e 394 (395)
T d1xi9a_ 393 KE 394 (395)
T ss_dssp HH
T ss_pred hc
Confidence 75
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.80 E-value=4.6e-18 Score=171.54 Aligned_cols=298 Identities=13% Similarity=0.007 Sum_probs=184.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
.+.++++|+++++++|++ .+++||+|+|+|+++++... ...++.++. ...|.+ ... ........+..+..++.
T Consensus 37 ~~~~~~l~~~la~~~g~~---~~v~f~~sGt~An~~a~~~~-~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 110 (345)
T d1v72a1 37 DELTAQVKRKFCEIFERD---VEVFLVPTGTAANALCLSAM-TPPWGNIYCHPASHIN-NDE-CGAPEFFSNGAKLMTVD 110 (345)
T ss_dssp SHHHHHHHHHHHHHHTSC---CEEEEESCHHHHHHHHHHTS-CCTTEEEEECTTSHHH-HSS-TTHHHHHTTSCEEEECC
T ss_pred CHHHHHHHHHHHHHHCCC---cEEEECCchHHHHHHHHHHH-HhcCCcccccccccee-eec-hhhHHHhcCcccccccc
Confidence 577889999999999985 34999999999999999887 777777544 444433 221 12344556777777766
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcCC---CCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALGS---KDMDT 329 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~~---~d~~~ 329 (588)
+ .++.++++++++.+........ .....++...+.+..|...+++++ .+|+++|+++++|+++... .+...
T Consensus 111 ~-~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 188 (345)
T d1v72a1 111 G-PAAKLDIVRLRERTREKVGDVH-TTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS 188 (345)
T ss_dssp C-GGGCCCHHHHHHHTTSSTTCTT-SCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC
T ss_pred c-ccccccHHHhhhhhcccccccc-cccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccC
Confidence 5 6678999999999873211111 122345555566677777776664 6799999999999997652 11111
Q ss_pred CCCC--CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCc
Q 037063 330 LGLS--LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407 (588)
Q Consensus 330 l~l~--~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~ 407 (588)
+... ....+.+..+.+|..+ . +.|..+.............. .+ ..++.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~------------------------~~-~~~~~~~ 240 (345)
T d1v72a1 189 PAEMTWKAGVDALSFGATKNGV--L-AAEAIVLFNTSLATEMSYRR------------------------KR-AGHLSSK 240 (345)
T ss_dssp TTTTTGGGTCCEEEECCGGGTC--S-SCEEEEESSGGGHHHHHHHH------------------------HH-TTCCCSS
T ss_pred HHHhhccccccccccCcccccc--c-cccccccchhhhhhhccccc------------------------cc-cccccch
Confidence 2111 1124555666666433 2 23333333322111100000 00 1112222
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTR 487 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~ 487 (588)
.. .+...+...+......+...+...+..++.+.+.++ +++++.+|. .++++.+.+.
T Consensus 241 ~~----~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~g~~~~~p~----~~niv~~~~~------ 297 (345)
T d1v72a1 241 MR----FLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL---------GGVEVLGGT----EANILFCRLD------ 297 (345)
T ss_dssp TH----HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC---------TTEEEESCC----CSSEEEEEEC------
T ss_pred hh----HHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhc---------CCcEeccCC----CccEEEEEcC------
Confidence 22 222334444434346777788888888888888874 788888773 4678777654
Q ss_pred cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 488 IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 488 i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
.+. ...|.++||.+.++. .+...||+|++.++|.||||++++.|++.
T Consensus 298 --~~~-~~~L~~~gi~v~~~~----------------------------~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 298 --SAM-IDALLKAGFGFYHDR----------------------------WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp --HHH-HHHHHHTTCBCBCSS----------------------------SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred --HHH-HHHHHHcCCCccccC----------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 233 445666798775441 23339999999999999999999999863
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.80 E-value=1.9e-18 Score=181.92 Aligned_cols=305 Identities=13% Similarity=0.065 Sum_probs=192.2
Q ss_pred HHHHHHHHHh------------CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCE
Q 037063 183 KIRKRIMDFM------------NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGAR 250 (588)
Q Consensus 183 ~~r~~ia~~l------------ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~ 250 (588)
++|+.||+++ +++++ +|++|+|+++|+.+++.++ .++||+|++....+... ...++..|++
T Consensus 76 ~LReaia~~~~~~~~~~~~~~~~~~~~--~I~it~G~~~al~~~~~~l-~~~Gd~Vlv~~P~y~~~----~~~~~~~G~~ 148 (412)
T d1bw0a_ 76 EAREAVATWWRNSFVHKEELKSTIVKD--NVVLCSGGSHGILMAITAI-CDAGDYALVPQPGFPHY----ETVCKAYGIG 148 (412)
T ss_dssp HHHHHHHHHHHHHHCCSTTTGGGCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTHH----HHHHHHTTCE
T ss_pred HHHHHHHHHHHHhcCcccccCCCCCCC--eEEEecccccchhhhhhhh-hccccceeeeeccchhh----hhhhhccCcc
Confidence 5666666654 24444 4999999999999999999 89999977554444322 3456778999
Q ss_pred EEEEeccC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcC--
Q 037063 251 VSSAEFAW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALG-- 323 (588)
Q Consensus 251 v~~v~~~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~-- 323 (588)
++.++++. .+...+.+++++.+. +++++++++.++||||..++.+++ +.|++++++||+|.+..-
T Consensus 149 ~~~v~~~~~~~~~~~~~~l~~~~~--------~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~ 220 (412)
T d1bw0a_ 149 MHFYNCRPENDWEADLDEIRRLKD--------DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMV 220 (412)
T ss_dssp EEEEEEEGGGTTEECHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCB
T ss_pred ccccccccccccchhhHHHHhhhh--------ccccccccccccccccccchhhhccccccccccCCeeeechhhHHHhc
Confidence 99999874 234678888888877 789999999999999999998764 678899999999998321
Q ss_pred --CCCC-----CCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccc
Q 037063 324 --SKDM-----DTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDE 396 (588)
Q Consensus 324 --~~d~-----~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~ 396 (588)
+... ...++.....-+++.|+.|.+|.+..++|++++.+............ .. ..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~--~~------------~~---- 282 (412)
T d1bw0a_ 221 FKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGL--KR------------VG---- 282 (412)
T ss_dssp CCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHH--HH------------HH----
T ss_pred cCCCCCccccccccccccccccccccccCccCccCCCCcccccccchhhcchhhhhhh--cc------------cc----
Confidence 1000 01111111133677799998886456799999987654321100000 00 00
Q ss_pred cccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEE
Q 037063 397 SSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSL 476 (588)
Q Consensus 397 ~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv 476 (588)
.. -.++....+. .+.....+..++. +..+.++.+..++++.+.|.+. +++.+..| .|+..
T Consensus 283 -~~-~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~l~~~---------~g~~~~~p-----~gg~~ 342 (412)
T d1bw0a_ 283 -ML-VCGPCTVVQA---ALGEALLNTPQEH-LDQIVAKIEESAMYLYNHIGEC---------IGLAPTMP-----RGAMY 342 (412)
T ss_dssp -HH-HTCSCHHHHH---HHHHHHHSSCHHH-HHHHHHHHHHHHHHHHHHHTTS---------TTEEECCC-----CBTTE
T ss_pred -cc-ccCCchhhhh---hcccccccccccc-cccccchhHHHHHHHHHHHHHh---------cCceecCC-----CCceE
Confidence 00 0111111110 1111111111111 4566777777888888888763 56776654 34443
Q ss_pred EE-Eeec--CCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHH
Q 037063 477 AF-NVFD--WNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFE 553 (588)
Q Consensus 477 ~f-~~~~--~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~e 553 (588)
.| .+.. ..+..-+.+.+.++|++.||.+.+|..+ .+.++||+|++ .+.|
T Consensus 343 l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F--------------------------g~~g~iRis~~--~~~e 394 (412)
T d1bw0a_ 343 LMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIF--------------------------HAPGFTRLTTT--RPVE 394 (412)
T ss_dssp EEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGG--------------------------TCTTEEEEECC--SCHH
T ss_pred EEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEecccc--------------------------CCCCeEEEEEc--CCHH
Confidence 33 4432 1111122345677888899999988543 11228999975 5889
Q ss_pred HHHHHHHHHHHhhhh
Q 037063 554 DTYRLWAFVSRFLDA 568 (588)
Q Consensus 554 Dv~~li~~l~~~l~~ 568 (588)
+++..++.|++|+++
T Consensus 395 ~l~eal~Rl~~~l~~ 409 (412)
T d1bw0a_ 395 VYREAVERIKAFCQR 409 (412)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998888765
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=5.3e-18 Score=176.00 Aligned_cols=298 Identities=17% Similarity=0.147 Sum_probs=196.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
.++.+.+.+.+.+..+.+.+...|++|+|+++|+.+++.++ .++||+|++....+.... ..+...|..+..++.+
T Consensus 68 ~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~vlv~~P~y~~~~----~~~~~~~~~~~~~~~~ 142 (375)
T d1o4sa_ 68 YELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMAL-LDPGDEVIVFSPVWVSYI----PQIILAGGTVNVVETF 142 (375)
T ss_dssp HHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECC
T ss_pred HHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHH-hCCCCEEEEccCccccch----hhhhcccccccccccc
Confidence 34555555555555666555556999999999999999999 899999775544433222 2345578888887775
Q ss_pred C-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcCC-CC---CC
Q 037063 258 W-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALGS-KD---MD 328 (588)
Q Consensus 258 ~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~~-~d---~~ 328 (588)
. ....++.+.++.... +++++++++.++||||..++.+++ ++|++++++|+.|.+...- .+ ..
T Consensus 143 ~~~~~~~~~~~~~~~~~--------~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~ 214 (375)
T d1o4sa_ 143 MSKNFQPSLEEVEGLLV--------GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTS 214 (375)
T ss_dssp GGGTTCCCHHHHHHTCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCC
T ss_pred ccccccchhHHHHHhhc--------cCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccc
Confidence 3 334566777766555 789999999999999999998874 6789999999999973321 00 11
Q ss_pred CCC-CCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCc
Q 037063 329 TLG-LSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407 (588)
Q Consensus 329 ~l~-l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~ 407 (588)
.+. ......-+++.|+.|.||.+..++|+++..++.++.+....... +...
T Consensus 215 ~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~~~~~~~~~~~----------------------------~~~~ 266 (375)
T d1o4sa_ 215 ILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHT----------------------------TSCI 266 (375)
T ss_dssp HHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHH----------------------------TCSC
T ss_pred cccccCCCCCEEEEeechhhccCCccccccccccccchhhhhhhhccc----------------------------cccc
Confidence 111 11233568899999998854567999998888766443221110 0000
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTR 487 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~ 487 (588)
.. .....+...++.. .....++.....+++.+.|+++ +++++.| ..|..+-+.+..
T Consensus 267 ~~----~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~l~~~----------g~~~~~p----~gg~f~~~~~~~----- 322 (375)
T d1o4sa_ 267 NT----VAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM----------GVKFVEP----EGAFYLFFKVRG----- 322 (375)
T ss_dssp CH----HHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT----------TCCCCCC----SBSSEEEEECSS-----
T ss_pred cc----cchhhhhhhcccc-hhhhHHHHHHHHHHHHHHHHhc----------CceEecC----CccEEEEEECCC-----
Confidence 11 1111222233222 4556666677778888888874 3444433 123344445543
Q ss_pred cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 488 IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 488 i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
.+.+.+.+++.++||.+++|..+. ..| +||||++ ++.|++++.++.|+++|+
T Consensus 323 ~~~~~~~~ll~~~gV~v~pG~~F~------------------------~~g--~iRis~~--~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 323 DDVKFCERLLEEKKVALVPGSAFL------------------------KPG--FVRLSFA--TSIERLTEALDRIEDFLN 374 (375)
T ss_dssp CHHHHHHHHHHHHCEECEEGGGGT------------------------CTT--EEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCEEEEEccccC------------------------CCC--eEEEEEc--CCHHHHHHHHHHHHHHhc
Confidence 235667888999999999986541 023 8999986 588999999999999987
Q ss_pred h
Q 037063 568 A 568 (588)
Q Consensus 568 ~ 568 (588)
.
T Consensus 375 ~ 375 (375)
T d1o4sa_ 375 S 375 (375)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=1.2e-18 Score=183.74 Aligned_cols=316 Identities=15% Similarity=0.127 Sum_probs=194.9
Q ss_pred HHHHHHHHH----hCCC-CCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 183 KIRKRIMDF----MNIS-EDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 183 ~~r~~ia~~----lga~-~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++|+.|+++ .|.+ -+..+|++|+|+++|+.+++.++ ..+||+|+++...+... ...++..|++++.++.+
T Consensus 84 ~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~-~~~Gd~Vlv~~P~y~~~----~~~~~~~g~~~~~~~~~ 158 (420)
T d1vp4a_ 84 VLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLF-LDDESYCVLDDPAYLGA----INAFRQYLANFVVVPLE 158 (420)
T ss_dssp HHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCHHH----HHHHHTTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhh-hccccccccccccccch----hHHHHHHhhhccccccc
Confidence 455555554 4543 12345999999999999999999 89999977655443322 34567789999999986
Q ss_pred CCCCccCHHHHHHHHhhhc-cccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC----CCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKR-KKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG----SKDMD 328 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~-~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~----~~d~~ 328 (588)
+ ..++.+.++..+.+.. .....+.+.+++++.++||||..++.++ | ++|+++++++|+|.+..- +....
T Consensus 159 -~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~ 236 (420)
T d1vp4a_ 159 -D-DGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVD 236 (420)
T ss_dssp -T-TEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCC
T ss_pred -c-cccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccc
Confidence 3 3478888777665311 1122345678889999999999999876 4 789999999999998322 10011
Q ss_pred C-CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCc
Q 037063 329 T-LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407 (588)
Q Consensus 329 ~-l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~ 407 (588)
+ ........-+++.|+.|+++. ..++|+++..+++++.+....... ..+++.+
T Consensus 237 ~~~~~~~~~~~i~~~s~sk~~~~-G~RiG~~~~~~~~i~~l~~~~~~~-------------------------~~~~~~~ 290 (420)
T d1vp4a_ 237 PIFKIGGPERVVLLNTFSKVLAP-GLRIGMVAGSKEFIRKIVQAKQSA-------------------------DLCSPAI 290 (420)
T ss_dssp CHHHHHCTTTEEEEEESTTTTCG-GGCEEEEECCHHHHHHHHHHHHHH-------------------------HSSCCHH
T ss_pred cccccccccceeEEecccccccc-ccccccccccchhhhhhhhhhhhc-------------------------cccCchh
Confidence 1 111112244677788887763 567999999988877664322110 1112222
Q ss_pred cchhhHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc-EEEEEeecC
Q 037063 408 SGVSSKLVECKGLDH---ADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP-SLAFNVFDW 483 (588)
Q Consensus 408 ~~~~~~~al~~aL~~---l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~-iv~f~~~~~ 483 (588)
.+. +....++. .+. +.++.++.+...+.+.+.|.++.. ..+++++..| .|+ .+-+.+++
T Consensus 291 ~q~----~~a~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~L~~~~~-----~~~g~~~~~p-----~gg~f~~~~~~~- 353 (420)
T d1vp4a_ 291 THR----LAARYLERYDLLEQ--LKPTIELYRRKRTVMLNALEEYFS-----DIPGVKWVKS-----EGGLFIWLTLPE- 353 (420)
T ss_dssp HHH----HHHHHHHHSCHHHH--THHHHHHHHHHHHHHHHHHHHHST-----TSTTCEECCC-----SBSSEEEEECCT-
T ss_pred hhh----hhhhhccccccccc--chhHHHHhhhhcccchhhhhhhhc-----cCCCcEEecC-----CceEEEEEECCC-
Confidence 221 11122211 111 233344444445555555554311 1467777765 344 44445543
Q ss_pred CCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 484 NGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 484 ~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
| ++...+.++|.++||.+.+|..+... ..+.++||+|++. .+.|++++.++.|+
T Consensus 354 -~--~d~~~~~~~l~~~gV~v~PG~~F~~~----------------------~~~~~~iRls~~~-~~~e~l~~a~~rL~ 407 (420)
T d1vp4a_ 354 -G--FDTWEMFEYAKRKKVFYVPGRVFKVY----------------------DEPSPSMRLSFCL-PPDEKIVEGIKRLR 407 (420)
T ss_dssp -T--CCTTTTHHHHHHHTEECEEGGGGCTT----------------------CCCCSEEEEECSS-SCHHHHHHHHHHHH
T ss_pred -C--CCHHHHHHHHHHCCeEEEechhhCCC----------------------CCCCCEEEEEeCc-CCHHHHHHHHHHHH
Confidence 1 44555677888899999999655310 0122389999874 47789999999999
Q ss_pred Hhhhhhhcccc
Q 037063 564 RFLDADFVEKE 574 (588)
Q Consensus 564 ~~l~~~~~~~~ 574 (588)
++|++..-+|.
T Consensus 408 ~~l~~~~~~~~ 418 (420)
T d1vp4a_ 408 EVVLEYGKEKH 418 (420)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHhhHhhC
Confidence 98887655543
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.79 E-value=7e-18 Score=176.51 Aligned_cols=306 Identities=10% Similarity=0.035 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcC-CCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVY-DHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~-e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++.+.+.+.+.+..|.+.+..+|++|+|+++|+.+++.++ .++||+|++.. .++. . ....+..|++.+.++..
T Consensus 70 ~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~-~~pgd~vi~~~p~~~~-~----~~~~~~~g~~~v~~~~~ 143 (394)
T d1c7na_ 70 EYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREF-TKPGDGVIIITPVYYP-F----FMAIKNQERKIIECELL 143 (394)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH-CCTTCEEEECSSCCTH-H----HHHHHTTTCEEEECCCE
T ss_pred HHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhccc-cccccccccccCcccc-h----hhHHhhhhhcccccccc
Confidence 3444444444444466544456999999999999999999 99999976554 4432 2 23445678888887764
Q ss_pred CC--CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC----CCCC
Q 037063 258 WP--NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG----SKDM 327 (588)
Q Consensus 258 ~~--~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~----~~d~ 327 (588)
.. ...++.+.++.++.. +++++++++.++||||..++.++ | ++|++++++||+|.+..- +...
T Consensus 144 ~~~~~~~~d~~~~~~~~~~-------~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~ 216 (394)
T d1c7na_ 144 EKDGYYTIDFQKLEKLSKD-------KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEH 216 (394)
T ss_dssp EETTEEECCHHHHHHHHTC-------TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCC
T ss_pred cccccccchhhhhhhhhcc-------ccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccc
Confidence 22 234788888877752 67999999999999999999877 4 778999999999998321 1000
Q ss_pred CC---CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcch-hcccCCCCCCCceEeeecCCCcccccccccccccccCC
Q 037063 328 DT---LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSA-SVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP 403 (588)
Q Consensus 328 ~~---l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~-~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G 403 (588)
.. ........-+++.|+.|.||+++.++|++++.+..+ +.+...... ..+
T Consensus 217 ~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~--------------------------~~~ 270 (394)
T d1c7na_ 217 TVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDA--------------------------TSG 270 (394)
T ss_dssp CCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHH--------------------------TTC
T ss_pred cchhhhhcccccceeecccccccccccccccccccccChhhhhhhhhhhhh--------------------------ccc
Confidence 10 110111244788899998886456788888877544 222211100 000
Q ss_pred CCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEE-Eeec
Q 037063 404 ESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAF-NVFD 482 (588)
Q Consensus 404 T~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f-~~~~ 482 (588)
.+..... .++.........+. .+.+.++.++..+.+.+.+... .+++++..| .|+.+.| .+.+
T Consensus 271 ~~~~~~~--~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~p-----~g~~~~~~~~~~ 334 (394)
T d1c7na_ 271 MPFTTLG--YKACEICYKECGKW-LDGCIKVIDKNQRIVKDFFEVN--------HPEIKAPLI-----EGTYLQWIDFRA 334 (394)
T ss_dssp CCCCHHH--HHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHH--------CTTSBCCCC-----SBSSEEEEECGG
T ss_pred ccccccc--chhhhhhhcchhhh-hcccccccchhhhhhhhhhhcc--------ccceeecCC-----CceeEEEEECCC
Confidence 0110000 01111121111111 3445555555566666666542 234443332 3554444 4443
Q ss_pred CCCCCcCHHHH-HHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHH
Q 037063 483 WNGTRIDPALV-QKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAF 561 (588)
Q Consensus 483 ~~g~~i~~~~v-~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~ 561 (588)
. .++...+ .+++++.||.+.+|..... .|.++||+|++ ++.|+|+..++.
T Consensus 335 ~---~~~~~~~~~~Ll~~~gV~v~pG~~Fg~------------------------~~~~~iRis~~--~~~e~i~eal~r 385 (394)
T d1c7na_ 335 L---KMDHKAMEEFMIHKAQIFFDEGYIFGD------------------------GGIGFERINLA--APSSVIQESLER 385 (394)
T ss_dssp G---CCCHHHHHHHHHHTTCCCCEEGGGGCG------------------------GGTTEEEEECC--SCHHHHHHHHHH
T ss_pred C---CCCHHHHHHHHHHhCCEEEEcchhhCC------------------------CCCCEEEEEEe--CCHHHHHHHHHH
Confidence 2 1456666 4567888999998854310 22238999986 478899999999
Q ss_pred HHHhhhh
Q 037063 562 VSRFLDA 568 (588)
Q Consensus 562 l~~~l~~ 568 (588)
|+++|++
T Consensus 386 l~~~l~~ 392 (394)
T d1c7na_ 386 LNKALKD 392 (394)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988875
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.77 E-value=2.2e-17 Score=172.95 Aligned_cols=310 Identities=13% Similarity=0.100 Sum_probs=192.1
Q ss_pred HHHHHHHHHh----CCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 183 KIRKRIMDFM----NISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 183 ~~r~~ia~~l----ga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
++|+.|++++ |.+-+..+|++|+|+++++.+++.++ .++||+|++....+... ...++..|++++.++.+.
T Consensus 75 ~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l-~~~gd~v~~~~P~y~~~----~~~~~~~g~~~~~v~~~~ 149 (403)
T d1wsta1 75 PLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVF-LNPGDPIVVEAPTYLAA----IQAFKYYDPEFISIPLDD 149 (403)
T ss_dssp HHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCHHH----HHHHHTTCCEEEEEEEET
T ss_pred HHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHH-hhcCCccccCCCcchhh----hHHHhhccccceeEeecc
Confidence 5566666654 44333345999999999999999999 89999977655443322 345567899999999873
Q ss_pred CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC----CCCCCCC
Q 037063 259 PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG----SKDMDTL 330 (588)
Q Consensus 259 ~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~----~~d~~~l 330 (588)
++ .+...+...... .....++.+.+++++.++||||..++.++ | ++|++++++||+|.+..- +.....+
T Consensus 150 -~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~ 226 (403)
T d1wsta1 150 -KG-MRVDLLEEKLEE-LRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPI 226 (403)
T ss_dssp -TE-ECHHHHHHHHHH-HHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCG
T ss_pred -cC-Cccccccccchh-hhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcc
Confidence 22 222222222210 01223467788999999999999999886 4 679999999999998421 1101111
Q ss_pred -CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 331 -GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 331 -~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
........+++.|++|.++. ..++|+++.++++++.+....... ..+.....+
T Consensus 227 ~~~~~~~~~i~~~S~SK~~~~-G~RiG~~i~~~~~i~~~~~~~~~~-------------------------~~~~~~~~~ 280 (403)
T d1wsta1 227 KHFDDYGRVIYLGTFSKILAP-GFRIGWVAAHPHLIRKMEIAKQSI-------------------------DLCTNTFGQ 280 (403)
T ss_dssp GGGCSSSCEEEEEESTTTTCG-GGCCEEEEECHHHHHHHHHHHHHH-------------------------HSSCCHHHH
T ss_pred cccCCCCcEEEEccccceecC-cccccccccchHHHHHHHHHHhhh-------------------------ccccccchh
Confidence 11233467889999998873 577999999988876554322110 000011111
Q ss_pred hhhHHHHHHHHH--HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCC
Q 037063 410 VSSKLVECKGLD--HADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTR 487 (588)
Q Consensus 410 ~~~~~al~~aL~--~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~ 487 (588)
.+....++ ..+. .++++.++.+...+.+.+.|.+. ...++....| ..|..+.+.+++.
T Consensus 281 ----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~~-------~~~~~~~~~p----~gg~~~~~~~~~~---- 340 (403)
T d1wsta1 281 ----AIAWKYVENGYLDE-HIPKIIEFYKPRRDAMLEALEEY-------MPEGVEWTKP----EGGMFVRVTLPEG---- 340 (403)
T ss_dssp ----HHHHHHHHTTHHHH-HHHHHHHHHHHHHHHHHHHHHHH-------CCTTCEECCC----SBSSEEEEECCTT----
T ss_pred ----hhHHhhhhccccch-hHHHHHHHHHHHHHHHHHHHHhh-------ccCCeEEeCC----CceeEEEEECCCC----
Confidence 11111111 1111 14566666677777777777764 1134555544 2234444455431
Q ss_pred cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhh
Q 037063 488 IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 488 i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~ 567 (588)
++...+.++|.++||.+.+|..+... ..+.++||++++. .++++++..++.|+++|+
T Consensus 341 ~~~~~~~~~l~~~gV~v~pg~~f~~~----------------------~~~~~~iRi~~~~-~~~~~l~~al~rl~~~l~ 397 (403)
T d1wsta1 341 IDTKLMMERAVAKGVAYVPGEAFFVH----------------------RDKKNTMRLNFTY-VPEETIREGVRRLAETIK 397 (403)
T ss_dssp CCTTTTHHHHHHTTEECEEGGGGSTT----------------------CCCCSEEEEECSS-SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCEEEEechhhcCC----------------------CCCCCEEEEEecC-CCHHHHHHHHHHHHHHHH
Confidence 45566777888899999988544210 0223399999875 478999999999999887
Q ss_pred hh
Q 037063 568 AD 569 (588)
Q Consensus 568 ~~ 569 (588)
+.
T Consensus 398 ~~ 399 (403)
T d1wsta1 398 EE 399 (403)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.77 E-value=2e-17 Score=174.39 Aligned_cols=311 Identities=9% Similarity=-0.014 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHhCCCCC-CceEEEecCHHHHHHHHHHhCCCCCCCeEEEcC-CCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 179 ELESKIRKRIMDFMNISED-DYTLVFTANQSSAFKLLAESYPFYSNPRLLTVY-DHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~-e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~-e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++.+.+.+.+.+..|.+.+ ..+|++|+|+++|+.+++.++ .++||+|++.. .|+. . ...+...|++++.+++
T Consensus 70 ~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l-~~~gd~vlv~~P~y~~-~----~~~~~~~g~~~~~v~~ 143 (418)
T d2r5ea1 70 RLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGH-VDEGDEVIIIEPFFDC-Y----EPMVKAAGGIPRFIPL 143 (418)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT-H----HHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhc-cccccceeccccccch-h----hHHHHHcCCeEEEEEe
Confidence 4444444445555565433 235999999999999999999 89999976544 4443 2 3445667999999988
Q ss_pred cCCC---------CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC
Q 037063 257 AWPN---------LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG 323 (588)
Q Consensus 257 ~~~~---------~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~ 323 (588)
+... ...+.+++.+... .++++++++.++||||..++.++ | ++|+++|+++|.|++...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~ 215 (418)
T d2r5ea1 144 KPNKTGGTISSADWVLDNNELEALFN--------EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEH 215 (418)
T ss_dssp EESCCSSCEEGGGEECCHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred cccccccchhhhhhhhhHHHHhhhhh--------ccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhh
Confidence 6322 2356677766665 78999999999999999999887 4 779999999999998432
Q ss_pred ----CCCCCC-CCCCC-CCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccccc
Q 037063 324 ----SKDMDT-LGLSL-FKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDES 397 (588)
Q Consensus 324 ----~~d~~~-l~l~~-~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~ 397 (588)
+..... ..+.. ...-+++.|+.|.+|++..++|+++..+++++.+.......
T Consensus 216 ~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~i~~~~~~~~~~---------------------- 273 (418)
T d2r5ea1 216 MVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNC---------------------- 273 (418)
T ss_dssp CBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCHHHHHHHHHHHTTT----------------------
T ss_pred hccCCCccccccccccccceeeeeecCCccccCCCcccccccccchhhhhhhhccccc----------------------
Confidence 110111 11111 12336778999988854567999999888876554322110
Q ss_pred ccccCCCCCccchhhHHHHHHHHHHHH---HhC---HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCC
Q 037063 398 SQSKFPESSISGVSSKLVECKGLDHAD---ALG---LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFD 471 (588)
Q Consensus 398 ~f~e~GT~~~~~~~~~~al~~aL~~l~---~~G---~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~ 471 (588)
..++++..+. ++...+.... +.. ++++.++.+..++++.+.|.++ ++++..|
T Consensus 274 ---~~~~~~~~q~----a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----------g~~~~~P----- 331 (418)
T d2r5ea1 274 ---VYTCATPIQE----AIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV----------GMNPTVP----- 331 (418)
T ss_dssp ---TCSCCHHHHH----HHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT----------TCEEEEC-----
T ss_pred ---ccccccchhh----hccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhc----------CCcccCC-----
Confidence 0111111121 1112221100 000 4667777788888999999885 3455443
Q ss_pred cccEEEE-EeecCCC--------CCcCH-HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccE
Q 037063 472 RGPSLAF-NVFDWNG--------TRIDP-ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSV 541 (588)
Q Consensus 472 rg~iv~f-~~~~~~g--------~~i~~-~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~ 541 (588)
.|+...| .+....+ ...+. +....++++.||.+.+|..+..... . ..|.++
T Consensus 332 ~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~------------~-------~~g~~~ 392 (418)
T d2r5ea1 332 QGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPN------------K-------HLGEDF 392 (418)
T ss_dssp SBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGG------------H-------HHHTTE
T ss_pred CceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCC------------c-------cCCCCE
Confidence 4554444 3322100 01122 3345677888999999865521100 0 012238
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 542 VTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 542 vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
||+|+. .+.|++++.++.|++|+..
T Consensus 393 iRis~~--~~~e~l~~a~~rl~~~lg~ 417 (418)
T d2r5ea1 393 VRYCFF--KKDENLQKAAEILRKWKGS 417 (418)
T ss_dssp EEEECC--SCHHHHHHHHHHHHHHHTC
T ss_pred EEEEec--CCHHHHHHHHHHHHHHHcc
Confidence 999984 4889999999999998753
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=3.6e-17 Score=170.26 Aligned_cols=301 Identities=11% Similarity=0.074 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHHhCCCCCC-ceEEEecCHHHHHHHHHHhCCCCCCCeEEEc-CCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 179 ELESKIRKRIMDFMNISEDD-YTLVFTANQSSAFKLLAESYPFYSNPRLLTV-YDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e-~~vvft~g~T~al~lv~~s~~~~~gd~ll~~-~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
++.+.+.+.+.+..|.+.+. ..|++|+|+++|+.+++.++ .++||.|++. ..|+. . ...+...|+.+..++.
T Consensus 67 ~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l-~~~gd~vl~~~p~y~~-~----~~~~~~~g~~~~~~~~ 140 (382)
T d1u08a_ 67 ALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITAL-VRNGDEVICFDPSYDS-Y----APAIALSGGIVKRMAL 140 (382)
T ss_dssp HHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCTT-H----HHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhc-ccccceEEEecccccc-h----hhhhhhccccceeccc
Confidence 44444444444455765432 24999999999999999999 8999997654 44442 2 2344567998888888
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcCC--CCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALGS--KDMDTL 330 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~~--~d~~~l 330 (588)
+.....+|.+++++.+. +++++++++.++|+||..++.+++ +.|+++++.++.|...... ......
T Consensus 141 ~~~~~~~d~~~l~~~~~--------~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~ 212 (382)
T d1u08a_ 141 QPPHFRVDWQEFAALLS--------ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHA 212 (382)
T ss_dssp CTTTCCCCHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCC
T ss_pred ccccccCCHHHHhhhhc--------cCccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccc
Confidence 76667789999998887 789999999999999999998775 5677789999999873321 000111
Q ss_pred C---CC-CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCC
Q 037063 331 G---LS-LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESS 406 (588)
Q Consensus 331 ~---l~-~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~ 406 (588)
. .. ....-+++.|+.|.++.+..++|++++.+++++.+....... ..+++.
T Consensus 213 ~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~~~~~~~~~~~~~~-------------------------~~~~~~ 267 (382)
T d1u08a_ 213 SVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYL-------------------------TFSVNT 267 (382)
T ss_dssp CGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHHH-------------------------TSSCCH
T ss_pred cccccccccCcEEEEeeccccccCCcccchhhhccchhHHHHHhhhccc-------------------------cccccc
Confidence 0 00 011247889999988754567999999888776554322100 112222
Q ss_pred ccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE-EEeecCCC
Q 037063 407 ISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA-FNVFDWNG 485 (588)
Q Consensus 407 ~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~-f~~~~~~g 485 (588)
+.+ .++..+++.-++. +..+.++.++.++.+.+.+.. .+++++.| .|++.. +++....+
T Consensus 268 ~~q----~a~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~----------~g~~~~~p-----~gg~~~~~~~~~~~~ 327 (382)
T d1u08a_ 268 PAQ----LALADMLRAEPEH-YLALPDFYRQKRDILVNALNE----------SRLEILPC-----EGTYFLLVDYSAVST 327 (382)
T ss_dssp HHH----HHHHHHHHHCTHH-HHTHHHHHHHHHHHHHHHTTS----------SSCEECCC-----CBSSEEEEECTTTCC
T ss_pred ccc----cccccccccchHH-HHHHHHHHHhhhhhhhhhhcc----------CCcEEecC-----CceEEEEEecCCCCC
Confidence 333 2333444322211 445556666666667666544 35666544 355444 45543221
Q ss_pred CCcCHHH-HHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 486 TRIDPAL-VQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 486 ~~i~~~~-v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
.+..+ ..++++++||.+.+|..+.. . ..+.++||+|+. ++.|+++..++.|++
T Consensus 328 --~d~~e~~~~ll~e~gV~v~PG~~F~~---------------~-------~~~~~~~Ris~~--~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 328 --LDDVEFCQWLTQEHGVAAIPLSVFCA---------------D-------PFPHKLIRLCFA--KKESTLLAAAERLRQ 381 (382)
T ss_dssp --SCHHHHHHHHHHHSCEECEEGGGGCS---------------S-------CCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred --CCHHHHHHHHHHHCCEEEEcchhhCC---------------C-------CCCCCEEEEEEe--CCHHHHHHHHHHHhC
Confidence 34444 56678899999999865421 0 123348999975 578888888887765
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=4.9e-17 Score=171.36 Aligned_cols=310 Identities=10% Similarity=0.034 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHHhCCCCC-CceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISED-DYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~-e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
++.+.+.+.+.+.+|.+.+ +.+|++|+|+++|+.+++.++ ..+|+.|++........ ...+...|++++.++..
T Consensus 68 ~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l-~~~g~~vlv~~p~~~~y----~~~~~~~g~~~v~~~~~ 142 (418)
T d1w7la_ 68 PLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQAL-VDEGDEVIIIEPFFDCY----EPMTMMAGGRPVFVSLK 142 (418)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEECE
T ss_pred HHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhh-ccCCceeeccccccchh----HHHHHHcCCEeeccccc
Confidence 4444455555555576543 235999999999999999999 89999976544333212 23456679998888765
Q ss_pred C-----------CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCc
Q 037063 258 W-----------PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATAL 322 (588)
Q Consensus 258 ~-----------~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~ 322 (588)
. .+..++.+++..... +++++++++.++||||..++.++ | ++|++++++||.|.+..
T Consensus 143 ~~~~~~~~~~~~~~~~~d~~~~~~~~~--------~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~ 214 (418)
T d1w7la_ 143 PGPIQNGELGSSSNWQLDPMELAGKFT--------SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQ 214 (418)
T ss_dssp ECC---CCSEEGGGEECCHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred cccccccccccccCcccchhhhhcccc--------ccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhH
Confidence 2 123456666666555 78999999999999999999876 4 77889999999999832
Q ss_pred C----CCCCCC-CCCCCC-CCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccc
Q 037063 323 G----SKDMDT-LGLSLF-KPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDE 396 (588)
Q Consensus 323 ~----~~d~~~-l~l~~~-~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~ 396 (588)
- +....+ ..+... .--+++.|+.|.++.+..++|++++.++++..+.......
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~~~~~~l~~~~~~~--------------------- 273 (418)
T d1w7la_ 215 WMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNS--------------------- 273 (418)
T ss_dssp TCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHTT---------------------
T ss_pred HhhcCCCCCCCHHHccccccccceecccCccccCCCCcccccccchhhhhhhccccccc---------------------
Confidence 2 100111 112111 1357888999977754577999999988776654332110
Q ss_pred cccccCCCCCccchhhHHHHHHHHHHHHHh------CHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCC
Q 037063 397 SSQSKFPESSISGVSSKLVECKGLDHADAL------GLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMF 470 (588)
Q Consensus 397 ~~f~e~GT~~~~~~~~~~al~~aL~~l~~~------G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~ 470 (588)
..+++++.+ .++..++...... -+....++.+..++.+.+.|.++ ++++..|
T Consensus 274 ----~~~~~~~~q----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----------g~~~~~P---- 331 (418)
T d1w7la_ 274 ----VFHCPTQSQ----AAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV----------GLKPLIP---- 331 (418)
T ss_dssp ----TSCCCHHHH----HHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT----------TCEEEEC----
T ss_pred ----cccccchhh----HHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhc----------CCcccCC----
Confidence 011122222 2223333322211 04556677777888889999875 3455444
Q ss_pred CcccEEEE-Eeec----------CCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCc
Q 037063 471 DRGPSLAF-NVFD----------WNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGV 539 (588)
Q Consensus 471 ~rg~iv~f-~~~~----------~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ 539 (588)
.|++..+ .+.+ ..+...+.+.+.++|+++||.+.+|..+.. . ... ..+.
T Consensus 332 -~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~-----------~-~~~-------~~~~ 391 (418)
T d1w7la_ 332 -QGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYS-----------V-PHQ-------KHFD 391 (418)
T ss_dssp -SBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSC-----------H-HHH-------TTSC
T ss_pred -CceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcC-----------C-Ccc-------CCCC
Confidence 3454443 4421 111122344567888999999999864411 0 000 0223
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHhh
Q 037063 540 SVVTAALGCLTNFEDTYRLWAFVSRFL 566 (588)
Q Consensus 540 ~~vRvSlg~~~t~eDv~~li~~l~~~l 566 (588)
++||||+. ++.++++++++.|++|.
T Consensus 392 ~~iRis~~--~~~~~l~~a~~rl~~~~ 416 (418)
T d1w7la_ 392 HYIRFCFV--KDEATLQAMDEKLRKWK 416 (418)
T ss_dssp SEEEEECC--CCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 49999974 58899999999999875
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.76 E-value=1.7e-16 Score=164.39 Aligned_cols=173 Identities=16% Similarity=0.082 Sum_probs=135.8
Q ss_pred cCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEE
Q 037063 173 YGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 173 ~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
|++....-.+.+.++|+++-|+. ..+.++++.+|+..++.++ +++||+|+.....+......+.....+.|+++.
T Consensus 53 YsR~~nPT~~~le~~la~LEg~~----~a~~~sSGmaAi~~~~l~l-~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~ 127 (394)
T d1e5ea_ 53 YTRLGNPTVSNLEGKIAFLEKTE----ACVATSSGMGAIAATVLTI-LKAGDHLISDECLYGCTHALFEHALTKFGIQVD 127 (394)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEE
T ss_pred ecCCCCHHHHHHHHHHHHHhCCc----ceeeeccchHHHHHHHHhh-cccccccccccceeehhhHhHHHHhhccceeee
Confidence 33334566778999999999983 2677778889999888888 899999876555444456666778889999999
Q ss_pred EEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHH-HcCcEEEEeCCCcCCCCCCCC
Q 037063 253 SAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAA-EKGWHVLLDATALGSKDMDTL 330 (588)
Q Consensus 253 ~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~-~~g~~vvvDaa~~~~~d~~~l 330 (588)
+++.. +.++++++|+ ++|++|.+..++||+..+.|++.+ +.++ ++|+.++||.+-..|....++
T Consensus 128 ~~d~~------d~~~~~~~i~--------~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl 193 (394)
T d1e5ea_ 128 FINTA------IPGEVKKHMK--------PNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPV 193 (394)
T ss_dssp EECTT------STTHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGG
T ss_pred ccCCC------CHHHHHHhhc--------ccccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCcccCCch
Confidence 99864 5578999988 899999999999999999999988 6555 578999999998777656666
Q ss_pred CCCCCCCcEEEeccCccCC-CCCCceEEEEEeCcchhc
Q 037063 331 GLSLFKPDFLICSFYKIFG-ENPSGFGCLFVKKSSASV 367 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~~G-~~P~G~G~L~v~~~~~~~ 367 (588)
.+ ++|+++.|..|+++ .+-.-.|+++++++.+..
T Consensus 194 ~~---GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~ 228 (394)
T d1e5ea_ 194 DF---GVDVVVHSATKYINGHTDVVAGLICGKADLLQQ 228 (394)
T ss_dssp GG---TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHH
T ss_pred hc---CCCEEEechhhhcCCCcccccccccchhhHHHH
Confidence 53 39999999999776 211227888888776653
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.76 E-value=6.9e-17 Score=168.31 Aligned_cols=323 Identities=9% Similarity=0.029 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
..+++.++++++++|++ | +++++|+|.|+.+++.++.+++||+|+ ..+.+.+ .. ..+...|+++++++++
T Consensus 34 ~~v~~fE~~~a~~~g~~---~-~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a-~~----~ai~~~g~~p~~~d~~ 104 (384)
T d1b9ha_ 34 DEVNSFEREFAAHHGAA---H-ALAVTNGTHALELALQVMGVGPGTEVIVPAFTFIS-SS----QAAQRLGAVTVPVDVD 104 (384)
T ss_dssp SHHHHHHHHHHHHTTCS---E-EEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTH-HH----HHHHHTTCEEEEECBC
T ss_pred HHHHHHHHHHHHHHCcC---e-EEEeCCHHHHHHHHHHHcCCCCCCEEEEecccccc-cc----cccccccccccccccc
Confidence 45788999999999995 3 789999999999999999999999965 5666664 22 2345679999999998
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCC--CCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDM--DTLGLSL 334 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~--~~l~l~~ 334 (588)
..++.+|++++++.+. ++|++|++.|. .|...++++| ++|+++|+.++.|++|+.+... ..++ .
T Consensus 105 ~~~~~~d~~~~~~~i~--------~~tk~i~~~~~---~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g--~ 171 (384)
T d1b9ha_ 105 AATYNLDPEAVAAAVT--------PRTKVIMPVHM---AGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVG--E 171 (384)
T ss_dssp TTTCCBCHHHHHHHCC--------TTEEEECCBCG---GGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGG--G
T ss_pred ccccccchhhhccccc--------ccccccccccc---cccccccccchhhhhhhhhhhhhhhceecccccCCEecC--c
Confidence 7788999999999988 88999876654 8899999999 9999999999999999887211 1111 0
Q ss_pred CCCcEEEecc--CccCCCCCCceEEEEEeCc-chhcccCCCCCCCceEeeecCCCcccccccccccccccCCC-CCccch
Q 037063 335 FKPDFLICSF--YKIFGENPSGFGCLFVKKS-SASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPE-SSISGV 410 (588)
Q Consensus 335 ~~~D~vv~S~--~K~~G~~P~G~G~L~v~~~-~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT-~~~~~~ 410 (588)
.-|+.++|| .|.++. + +.|+++++++ +.+.++.....+.+.. .. ...+ .+...|. .-+..+
T Consensus 172 -~g~~~~~Sf~~~K~i~~-g-~GG~i~t~~~~~~~~~~~~~~~g~~~~--~~----~~~~------~~~~~G~n~rms~l 236 (384)
T d1b9ha_ 172 -LDSIATFSFQNGKLMTA-G-EGGAVVFPDGETEKYETAFLRHSCGRP--RD----DRRY------FHKIAGSNMRLNEF 236 (384)
T ss_dssp -SSSCEEEECCTTSSSCS-S-SCEEEEECTTCHHHHHHHHHHTBTTCC--TT----CSSC------CCCSCCCBCBCBHH
T ss_pred -ccccceecccccccccc-c-ccchhhhhhHHHHHHHHHHHhcCCCCc--cc----cccc------cccccccccccccc
Confidence 136666666 587764 3 3477777654 4444433221110100 00 0000 1112332 222222
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcc--cEEEEEeecCCCCCc
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRG--PSLAFNVFDWNGTRI 488 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg--~iv~f~~~~~~g~~i 488 (588)
.| ..++..++. ++++.++.+++++++.+.|+++ +++..........+. ....|.+.... ..
T Consensus 237 ---~A-aig~~qL~~--ld~~~~~R~~~~~~y~~~L~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 299 (384)
T d1b9ha_ 237 ---SA-SVLRAQLAR--LDEQIAVRDERWTLLSRLLGAI---------DGVVPQGGDVRADRNSHYMAMFRIPGLT--EE 299 (384)
T ss_dssp ---HH-HHHHHHHTT--HHHHHHHHHHHHHHHHHHHHTS---------TTCEECCCCTTCCBCCCSEEEEECTTCC--HH
T ss_pred ---hh-hhhhhhhhh--cccchhhhhhhhhhhhhhhhcc---------cccccccccccccccccccccceecccc--cc
Confidence 11 235555554 5888888899999999999985 445443322211222 34455554311 01
Q ss_pred CHHHHHHHHHhCCcEeccccccCccc----------ccchHH------HHHHHHhhhcCCCCCcCCccEEEEecCCCCC-
Q 037063 489 DPALVQKLADRHNISLSCGFLQNIFF----------SGEYEQ------ERVRVLETRSGTNETRSGVSVVTAALGCLTN- 551 (588)
Q Consensus 489 ~~~~v~~~l~~~gI~v~~G~~c~~~~----------~~~~~~------~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t- 551 (588)
..+.+.+.|.++||.++..+ .|-. .+.... ..+..+.++ .|++-++...|
T Consensus 300 ~Rd~l~~~L~~~GI~~~~~y--~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~-----------~l~LP~~~~Lt~ 366 (384)
T d1b9ha_ 300 RRNALVDRLVEAGLPAFAAF--RAIYRTDAFWELGAPDESVDAIARRCPNTDAISSD-----------CVWLHHRVLLAG 366 (384)
T ss_dssp HHHHHHHHHHHTTCCEEECC--CCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHH-----------EEEEEGGGGGSC
T ss_pred cHHHHHHHHHHCCCCeeeeC--cchhcCHHHHhcCCCcccccccccCCHHHHHHHhC-----------EEEccCCCCCCC
Confidence 23468888999999887642 2210 000000 011222222 79999887665
Q ss_pred HHHHHHHHHHHHHhhhh
Q 037063 552 FEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 552 ~eDv~~li~~l~~~l~~ 568 (588)
++||++.++.|++.|.+
T Consensus 367 e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 367 EPELHATAEIIADAVAR 383 (384)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 67999999999998764
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=2e-16 Score=163.02 Aligned_cols=312 Identities=17% Similarity=0.148 Sum_probs=199.8
Q ss_pred cCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEE
Q 037063 173 YGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 173 ~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
|++....-.+.+.++|+++-|.. ..+.++++..|+..++.++ .++||+|+.....+...+..+....++.|.++.
T Consensus 44 Y~R~~nPt~~~le~~la~LEgg~----~a~~~sSGMaAi~~~l~~l-~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~ 118 (384)
T d1cs1a_ 44 YSRRGNPTRDVVQRALAELEGGA----GAVLTNTGMSAIHLVTTVF-LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVL 118 (384)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEE
T ss_pred ccCCCCHHHHHHHHHHHHHhCCC----ceEEecChHHHHHHHHhhc-ccccceecccccccchhhhhhhhhhcccccccc
Confidence 44444566779999999999973 3778888888999998888 899999876655444466666778788899988
Q ss_pred EEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCC
Q 037063 253 SAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLG 331 (588)
Q Consensus 253 ~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~ 331 (588)
+++.. |.+++++++. ++|++|.+..++||+..+.|++.| ++||++|+.++||.+-..|....++.
T Consensus 119 ~~d~~------d~~~~~~~~~--------~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~Pl~ 184 (384)
T d1cs1a_ 119 FVDQG------DEQALRAALA--------EKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLA 184 (384)
T ss_dssp EECTT------CHHHHHHHHH--------TCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGG
T ss_pred cccCC------CHHHHHhhcc--------ccccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCcccccccc
Confidence 87653 6788999998 899999999999999999999999 99999999999999987776566665
Q ss_pred CCCCCCcEEEeccCccCC-CCCCceEEEEEeCcch-hcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 332 LSLFKPDFLICSFYKIFG-ENPSGFGCLFVKKSSA-SVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 332 l~~~~~D~vv~S~~K~~G-~~P~G~G~L~v~~~~~-~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
+ ++|+++.|..|+++ .+-.=.|+++.+++.+ +.+...... -.++.+...
T Consensus 185 ~---GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~--------------------------~G~~~~p~~ 235 (384)
T d1cs1a_ 185 L---GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANN--------------------------IGVTGGAFD 235 (384)
T ss_dssp G---TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHH--------------------------HTCBCCHHH
T ss_pred c---CCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhh--------------------------hhhcccccc
Confidence 3 39999999999776 2111156666655433 222211100 011111111
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCC------------CCcccEE
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVM------------FDRGPSL 476 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~------------~~rg~iv 476 (588)
. ..+..+|+.+ ....++..+.+..+.+.|++ .|.| +|+-|.-+ ...|+++
T Consensus 236 a---~ll~rgL~TL-----~lRm~~~~~nA~~lA~~L~~---------hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~ 298 (384)
T d1cs1a_ 236 S---YLLLRGLRTL-----VPRMELAQRNAQAIVKYLQT---------QPLVKKLYHPSLPENQGHEIAARQQKGFGAML 298 (384)
T ss_dssp H---HHHHHHHTTH-----HHHHHHHHHHHHHHHHHHTT---------CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEE
T ss_pred H---HHHhhccchh-----HHHHHHHHHHHHHHHHhccc---------CCceeeeeeccccchhHHHHHHhhcCCCccee
Confidence 1 2233555543 33333344444444455554 2444 56555311 1237899
Q ss_pred EEEeecCCCCCcCHHHHHHHHHhCCcE---eccccc----cCcccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecC
Q 037063 477 AFNVFDWNGTRIDPALVQKLADRHNIS---LSCGFL----QNIFFSGEYEQERVRVLETRSGTNETRSGV--SVVTAALG 547 (588)
Q Consensus 477 ~f~~~~~~g~~i~~~~v~~~l~~~gI~---v~~G~~----c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg 547 (588)
+|.+.+ +.+.+.+++++..+. ++-|.. |++.....+ ......... .|+ +.||+|+|
T Consensus 299 sf~l~~------~~~~a~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~-~~~~e~r~~--------~Gi~~~lvRlSvG 363 (384)
T d1cs1a_ 299 SFELDG------DEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHA-GMAPEARAA--------AGISETLLRISTG 363 (384)
T ss_dssp EEEESS------CHHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTT-TSCHHHHHH--------HTCCTTEEEEECC
T ss_pred EEeecc------hHHHHHHHHHhCCcceeccccCCccceeccccccccc-cCCHHHHHh--------cCCCcCeEEEEec
Confidence 998864 256677888776553 222322 222111000 000000011 222 38999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhh
Q 037063 548 CLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 548 ~~~t~eDv~~li~~l~~~l~~ 568 (588)
. ||++.|++-|++.|++
T Consensus 364 l----Ed~eDLi~Dl~~AL~a 380 (384)
T d1cs1a_ 364 I----EDGEDLIADLENGFRA 380 (384)
T ss_dssp S----SCHHHHHHHHHHHHHH
T ss_pred c----CCHHHHHHHHHHHHHH
Confidence 7 8888888888777664
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.75 E-value=7.2e-16 Score=159.68 Aligned_cols=322 Identities=11% Similarity=0.050 Sum_probs=210.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC--eEE-EcCCCchhHHHHHHHHHHhcCCEEEEE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP--RLL-TVYDHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd--~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
+..+++..+.+++++|++ | +++++|+|.|+.+++.++..++|| +|+ ..+.+.++.. .....|++++++
T Consensus 30 G~~v~~fE~~~~~~~g~k---~-ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~-----ai~~~G~~pv~v 100 (371)
T d2fnua1 30 GKRSLLFEEALCEFLGVK---H-ALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATAN-----MLLESGYTPVFA 100 (371)
T ss_dssp SHHHHHHHHHHHHHHTCS---E-EEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHH-----HHHHTTCEEEEC
T ss_pred CHHHHHHHHHHHHHHCcC---e-EEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccce-----eeeccCcccccc
Confidence 467889999999999995 3 889999999999999999887776 555 5677765332 234579999999
Q ss_pred eccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCC--CCC
Q 037063 255 EFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMD--TLG 331 (588)
Q Consensus 255 ~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~--~l~ 331 (588)
+++ ++..++.+++++.++ ++|+.|++.|. .|...++++| ++|+++|+.+|.|+||+.+.... ..|
T Consensus 101 Di~-~~~~~~~~~~~~~~~--------~~t~avi~vh~---~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G 168 (371)
T d2fnua1 101 GIK-NDGNIDELALEKLIN--------ERTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVG 168 (371)
T ss_dssp CBC-TTSSBCGGGSGGGCC--------TTEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETT
T ss_pred ccc-ccccccchhhhhhcc--------chhhccccccc---cccccccccccccccccchhhccchhhccCceeccccCC
Confidence 998 555677778777766 78999998875 7999999999 99999999999999999872111 121
Q ss_pred CCCCCCcEEEeccC--ccCCCCCCceEEEEEeC-cchhcccCCCCCCCceEeeecCCCcccccccccccccccCC-CCCc
Q 037063 332 LSLFKPDFLICSFY--KIFGENPSGFGCLFVKK-SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP-ESSI 407 (588)
Q Consensus 332 l~~~~~D~vv~S~~--K~~G~~P~G~G~L~v~~-~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G-T~~~ 407 (588)
..-|+.++||| |.++. .+.|+++.++ ++.++++..... |........ . .+...| ...+
T Consensus 169 ---~~g~~~~~Sf~~~K~l~~--g~GG~i~t~~~~~~~~~~~~~~~--g~~~~~~~~-----~------~~~~~G~n~r~ 230 (371)
T d2fnua1 169 ---GFALASVFSFHAIKPITT--AEGGAVVTNDSELHEKMKLFRSH--GMLKKDFFE-----G------EVKSIGHNFRL 230 (371)
T ss_dssp ---SSSSEEEEECCTTSSSCC--SSCEEEEESCHHHHHHHHHHTBT--TEEESSSSC-----E------EESSCCCBCCC
T ss_pred ---cccccccccccccccccc--ccceEEEeechhhhhhccccccc--ccccccccc-----c------ccccccccccc
Confidence 11377777775 86663 2457777776 444555543322 222111000 0 000223 2222
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCC-CcccEEEEEeecCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMF-DRGPSLAFNVFDWNGT 486 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~-~rg~iv~f~~~~~~g~ 486 (588)
..+ ....++..++. ++.+.++.+.+++++.+.|.++ +.+.+..+.... .......+.+.+..
T Consensus 231 sel----~Aaigl~qL~~--l~~~~~~R~~~~~~y~~~l~~~---------~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 293 (371)
T d2fnua1 231 NEI----QSALGLSQLKK--APFLMQKREEAALTYDRIFKDN---------PYFTPLHPLLKDKSSNHLYPILMHQKF-- 293 (371)
T ss_dssp CHH----HHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTTC---------SSEEESGGGCSSCCCCSCEEEEECGGG--
T ss_pred cch----hhhhhhhhhhh--ccchhhhhhhhhhhhccccccc---------ccccccccccccccccccccccccccc--
Confidence 222 22356666665 5888888888999999988874 667765443221 12234444444321
Q ss_pred CcCHHHHHHHHHhCCcEeccccccCcccccc-hHH-------HHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHH
Q 037063 487 RIDPALVQKLADRHNISLSCGFLQNIFFSGE-YEQ-------ERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRL 558 (588)
Q Consensus 487 ~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~-~~~-------~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~l 558 (588)
....+.+.+.|.++||.++.... |-.... +.. ..+..+.+ ..|.+-++...|.+||+++
T Consensus 294 ~~~r~~~~~~L~~~gI~~~~~y~--pl~~~~~~~~~~~~~~~pnae~~~~-----------~~l~LP~~~~lt~~di~~I 360 (371)
T d2fnua1 294 FTCKKLILESLHKRGILAQVHYK--PIYQYQLYQQLFNTAPLKSAEDFYH-----------AEISLPCHANLNLESVQNI 360 (371)
T ss_dssp GGGHHHHHHHHHHTTEECBCCCC--CGGGSHHHHHHHCCCCCHHHHHHHH-----------HEEEECCCTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCCcceeCc--ccccCHHHHhccccCCCHHHHHHHh-----------CeEECcCCCCCCHHHHHHH
Confidence 12356788889999999876532 110000 000 01112222 2899999999999999999
Q ss_pred HHHHHHhhhh
Q 037063 559 WAFVSRFLDA 568 (588)
Q Consensus 559 i~~l~~~l~~ 568 (588)
++.|.+++++
T Consensus 361 ~~~i~~~~~~ 370 (371)
T d2fnua1 361 AHSVLKTFES 370 (371)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999999875
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.75 E-value=2.2e-16 Score=163.32 Aligned_cols=311 Identities=18% Similarity=0.151 Sum_probs=197.2
Q ss_pred CCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEE
Q 037063 174 GSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSS 253 (588)
Q Consensus 174 g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~ 253 (588)
++....-.+.+.++|+++-|.. ..+.++++..|+..++.++ +++||+|+.....+......+....++.|+++.+
T Consensus 62 ~R~~nPt~~~LE~~la~LEgg~----~a~~~sSGMaAi~~~l~~l-~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~ 136 (398)
T d1qgna_ 62 GRYGNPTTVVLEEKISALEGAE----STLLMASGMCASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETILPKMGITATV 136 (398)
T ss_dssp GGGCCHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHH-SCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEE
T ss_pred cCCCChHHHHHHHHHHHHhCCc----eEEEecCcchHHHHHHhhc-ccccccccccccccchhhhhhccccccccccccc
Confidence 3333556778999999999983 3788888899999999988 8999998765554444666667788889999998
Q ss_pred EeccCCCCccCHHHHHH-HHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCC
Q 037063 254 AEFAWPNLRIHSGKLMK-KIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLG 331 (588)
Q Consensus 254 v~~~~~~~~i~~e~l~~-~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~ 331 (588)
++.. +.++.++ .+. ++|++|.+..++||+..+.|++.| ++||++|++++||.+-..|....++.
T Consensus 137 ~~~~------~~~~~~~~~~~--------~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~ 202 (398)
T d1qgna_ 137 IDPA------DVGALELALNQ--------KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALA 202 (398)
T ss_dssp ECSS------CHHHHHHHHHH--------SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTT
T ss_pred cccc------chhhhhhhhcc--------ccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeeccccCCchh
Confidence 8743 3344444 444 799999999999999999999999 99999999999999977776566665
Q ss_pred CCCCCCcEEEeccCccCCCC-CCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 332 LSLFKPDFLICSFYKIFGEN-PSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 332 l~~~~~D~vv~S~~K~~G~~-P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
+ ++|+++.|..|++|.+ -...|++..+++.+..++..... -.++.+....
T Consensus 203 ~---GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~--------------------------~G~~l~p~~a 253 (398)
T d1qgna_ 203 L---GADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHI--------------------------LGGALNPNAA 253 (398)
T ss_dssp T---TCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHH--------------------------HCCCCCHHHH
T ss_pred h---CCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhccc--------------------------CCCcCCHHHH
Confidence 3 3999999999977621 12256666665655544322100 0111111111
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCC------------CCcccEEE
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVM------------FDRGPSLA 477 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~------------~~rg~iv~ 477 (588)
..+..+|+-+ ....++..+.+..+.+.|.+ .|.| +|+-|.-+ ...|++++
T Consensus 254 ---~ll~rgl~TL-----~lRm~~~~~nA~~lA~~L~~---------hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~s 316 (398)
T d1qgna_ 254 ---YLIIRGMKTL-----HLRVQQQNSTALRMAEILEA---------HPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVS 316 (398)
T ss_dssp ---HHHHHHGGGH-----HHHHHHHHHHHHHHHHHHHT---------CTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEE
T ss_pred ---HHHHhcchHH-----HHHHHHHHHHHHHHHHHHHh---------CCCeeecCCCCCCCCcchhhhhhhcCCCCceee
Confidence 2233555443 33333344444444455554 2444 46655321 12378999
Q ss_pred EEeecCCCCCcCHHHHHHHHHhCCcE---ecccccc----CcccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCC
Q 037063 478 FNVFDWNGTRIDPALVQKLADRHNIS---LSCGFLQ----NIFFSGEYEQERVRVLETRSGTNETRSGV--SVVTAALGC 548 (588)
Q Consensus 478 f~~~~~~g~~i~~~~v~~~l~~~gI~---v~~G~~c----~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~ 548 (588)
|.+.+ +.+...+++++..+. .+-|... +|.....+ ...... .. ..|+ +.||+|+|.
T Consensus 317 f~~~g------~~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~-~~~~~~-~~-------~~Gi~~~liRlSvGl 381 (398)
T d1qgna_ 317 FEVDG------DLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYW-DLSQSD-RA-------KYGIMDNLVRFSFGV 381 (398)
T ss_dssp EEESS------CHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHST-TSCHHH-HH-------TTTCCSSEEEEECCS
T ss_pred eeecC------CHHHHHHHHHcCCcceeeeCCCCCcceeeCcchhccc-cCCHHH-HH-------hcCCCcCEEEEEecc
Confidence 98764 366677777776542 2223211 11000000 000000 11 1343 399999997
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 037063 549 LTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 549 ~~t~eDv~~li~~l~~~l~~ 568 (588)
||++.|++-|++.|++
T Consensus 382 ----Ed~eDLi~Dl~~AL~~ 397 (398)
T d1qgna_ 382 ----EDFDDLKADILQALDS 397 (398)
T ss_dssp ----SCHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHhc
Confidence 8888888888887764
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.74 E-value=2.9e-16 Score=161.68 Aligned_cols=169 Identities=13% Similarity=0.115 Sum_probs=130.9
Q ss_pred cCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEE
Q 037063 173 YGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 173 ~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
|++....-.+.+.++|+++-|+. + .+.++++..|+..+ .++ +++||+|+.....+......+.....+.|+++.
T Consensus 43 Y~R~~nPt~~~le~~la~LE~~~---~-a~~fsSGMaAisal-l~l-l~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~ 116 (380)
T d1ibja_ 43 YTRSGNPTRDALESLLAKLDKAD---R-AFCFTSGMAALSAV-THL-IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVK 116 (380)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS---E-EEEESSHHHHHHHH-HTT-SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEE
T ss_pred eeCCCChHHHHHHHHHHHHcCCc---e-EEehhhHHHHHHHH-HHh-hCCCCEEEEEecccccccchhhhhhcccccccc
Confidence 34444556678999999999983 2 55566667888765 456 799999876555555455565666778899999
Q ss_pred EEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCCCCCC
Q 037063 253 SAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDMDTLG 331 (588)
Q Consensus 253 ~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~~~l~ 331 (588)
+++.. +.++++++++ ++|++|.+..++||+..+.|++.| ++||++|++++||.+-..|....++.
T Consensus 117 ~~d~~------~~~~~~~ai~--------~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~~~Pl~ 182 (380)
T d1ibja_ 117 RVNTT------KLDEVAAAIG--------PQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLE 182 (380)
T ss_dssp EECTT------SHHHHHHHCC--------SSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGG
T ss_pred ccCcc------hHHHHHHHhc--------cCccEEEeccccccccccccHHHHHHHHHHcCCeEEeeccccccccccccc
Confidence 98754 6788998887 899999999999999999999999 99999999999999987776566665
Q ss_pred CCCCCCcEEEeccCccCC-CCCCceEEEEEeCcc
Q 037063 332 LSLFKPDFLICSFYKIFG-ENPSGFGCLFVKKSS 364 (588)
Q Consensus 332 l~~~~~D~vv~S~~K~~G-~~P~G~G~L~v~~~~ 364 (588)
+ ++|+++.|..|+++ .+-.-.|+++++++.
T Consensus 183 ~---GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~ 213 (380)
T d1ibja_ 183 L---GADIVMHSATKFIAGHSDVMAGVLAVKGEK 213 (380)
T ss_dssp T---TCSEEEEETTTTTTCSSCCCCEEEEECSHH
T ss_pred c---CCCEEEecccceeccccCccccccccchhh
Confidence 3 49999999999776 212226777777643
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=3.2e-16 Score=162.11 Aligned_cols=316 Identities=11% Similarity=0.085 Sum_probs=199.0
Q ss_pred cCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEE
Q 037063 173 YGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 173 ~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
|++......+.+.++++++-|+. ..+.++++..|+..++.++ +++||+|+.....+......+.+...+.|+++.
T Consensus 52 Y~R~~nPt~~~le~~la~LEg~~----~a~~~~SGMaAi~~~l~~l-~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~ 126 (391)
T d1cl1a_ 52 YGRRGTLTHFSLQQAMCELEGGA----GCVLFPCGAAAVANSILAF-IEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTS 126 (391)
T ss_dssp CTTTCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEE
T ss_pred eECCCChhHHHHHHHHHHHhCCc----cEEEeccccceeeehhhcc-cCCCCeEEEecccccchhhhhhhcccccccccc
Confidence 33334556678999999999873 3788889999999998888 899999776555444466666777788999999
Q ss_pred EEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHH--cCcEEEEeCCCcCCCCCCC
Q 037063 253 SAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAE--KGWHVLLDATALGSKDMDT 329 (588)
Q Consensus 253 ~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~--~g~~vvvDaa~~~~~d~~~ 329 (588)
+++.. +.++++++++ ++|++|.+..++||+..+.|++.| ++|++ +|++++||.+-..|....+
T Consensus 127 ~~d~~------d~~~~~~~i~--------~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~P 192 (391)
T d1cl1a_ 127 WFDPL------IGADIVKHLQ--------PNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKA 192 (391)
T ss_dssp EECTT------CGGGGGGTCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCG
T ss_pred cccCc------cccccccccc--------cccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhhhcc
Confidence 98753 5577777776 899999999999999999999999 88876 4999999999888865666
Q ss_pred CCCCCCCCcEEEeccCccCC-CCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 330 LGLSLFKPDFLICSFYKIFG-ENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 330 l~l~~~~~D~vv~S~~K~~G-~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
+++ ++|+++.|..|+++ .+-.-.|+++.+++..+.+...... ..++.+..
T Consensus 193 l~~---GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~--------------------------~G~~~~p~ 243 (391)
T d1cl1a_ 193 LDF---GIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYL--------------------------MGQMVDAD 243 (391)
T ss_dssp GGG---TCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHH--------------------------TTCCCCHH
T ss_pred ccc---ccceEEeecchhccccccccccceeccccccccchhhhhc--------------------------ccccCCch
Confidence 653 39999999999776 2112256666666655443221100 11111111
Q ss_pred chhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCC------------CCcccE
Q 037063 409 GVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVM------------FDRGPS 475 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~------------~~rg~i 475 (588)
.. ..+..+|+.+ ....++..+.+..+.+.|++ | |.| +|+.|.-+ ...+++
T Consensus 244 ~a---~ll~rgl~TL-----~lR~~~~~~nA~~vA~~L~~--h-------p~V~~V~yPgl~s~p~~~~~~~~~~g~gg~ 306 (391)
T d1cl1a_ 244 TA---YITSRGLRTL-----GVRLRQHHESSLKVAEWLAE--H-------PQVARVNHPALPGSKGHEFWKRDFTGSSGL 306 (391)
T ss_dssp HH---HHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHT--C-------TTEEEEECTTSTTSTTHHHHHHHCSCCCSE
T ss_pred hh---hhhhccchhH-----HHHHHHHHHHHHHHHHHHHh--c-------ccccccccccccchhhHHHHhhccCCCCcc
Confidence 11 2233455543 33333344444445555554 2 333 46655321 123578
Q ss_pred EEEEeecCCCCCcCHHHHHHHHHhCCcE---eccccccCcccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCCCC
Q 037063 476 LAFNVFDWNGTRIDPALVQKLADRHNIS---LSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGV--SVVTAALGCLT 550 (588)
Q Consensus 476 v~f~~~~~~g~~i~~~~v~~~l~~~gI~---v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~~ 550 (588)
++|.+... .+.+.+.++++.-.+. ++-|..-+ -.+..... ....+.. ....|+ +.||+|+|.
T Consensus 307 ~sf~l~~~----~~~e~~~~f~d~L~l~~~a~SlG~~~S-Li~~~~~~-~~~~~~~-----~~~~gi~~~liRlSVGl-- 373 (391)
T d1cl1a_ 307 FSFVLKKK----LNNEELANYLDNFSLFSMAYSWGGYES-LILANQPE-HIAAIRP-----QGEIDFSGTLIRLHIGL-- 373 (391)
T ss_dssp EEEEESSC----CCHHHHHHHHTTCSSCBCCSCCCSSSC-EEEEECHH-HHHHTST-----TCCCCCCSCEEEEECCS--
T ss_pred eeeeecCC----CCHHHHHHHHHcCCcceEeeCCCCCcc-ceeCCccc-ccccCCc-----hHhcCCCcCEEEEEecc--
Confidence 99998752 3467777887765542 22231100 00110100 0011111 012343 289999997
Q ss_pred CHHHHHHHHHHHHHhhhh
Q 037063 551 NFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 551 t~eDv~~li~~l~~~l~~ 568 (588)
||++.|++-|.+.|++
T Consensus 374 --Ed~eDLi~Dl~~AL~~ 389 (391)
T d1cl1a_ 374 --EDVDDLIADLDAGFAR 389 (391)
T ss_dssp --SCHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHh
Confidence 8888888887777654
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.73 E-value=1e-16 Score=159.62 Aligned_cols=297 Identities=12% Similarity=0.101 Sum_probs=166.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
.+..+++|++|++++|+++++ |+||+|+|+|+++++..+ .+++++++.....+...... ... ...+.....+..
T Consensus 34 ~~~~~~lr~~ia~~~g~~~~~--v~~tsggtean~~a~~~~-~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~- 107 (340)
T d1svva_ 34 DSHCAKAARLIGELLERPDAD--VHFISGGTQTNLIACSLA-LRPWEAVIATQLGHISTHET-GAI-EATGHKVVTAPC- 107 (340)
T ss_dssp SHHHHHHHHHHHHHHTCTTSE--EEEESCHHHHHHHHHHHH-CCTTEEEEEETTSHHHHSST-THH-HHTTCCEEEECC-
T ss_pred CHHHHHHHHHHHHHhCCCcce--EEEcCCHHHHHHHHHHHH-hhhccccccccccceeeeec-ccc-cccceeeeeccc-
Confidence 467789999999999998654 999999999999999988 78888865444443312211 122 223333333333
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcCC---CCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALGS---KDMDTL 330 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~~---~d~~~l 330 (588)
.......++...+.... ......+.++++....+..|...+.+. + ..|+++|.++++|+++... .+....
T Consensus 108 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~ 184 (340)
T d1svva_ 108 -PDGKLRVADIESALHEN--RSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDL 184 (340)
T ss_dssp -TTSCCCHHHHHHHHHHS--CSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCC
T ss_pred -ccccccchhHHHHhhhh--hcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeeeeccccccc
Confidence 22334445444444311 112233444444444555677776655 4 7788999999999996542 111111
Q ss_pred CCC--CCCCcEEEeccCccCCCCCCceEEEEEeCcch-hcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCc
Q 037063 331 GLS--LFKPDFLICSFYKIFGENPSGFGCLFVKKSSA-SVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSI 407 (588)
Q Consensus 331 ~l~--~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~-~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~ 407 (588)
... ....+....+..|..+ ..+.+. .+..... ....... .+ ..++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~-------------------------~~-~~~~~~~ 235 (340)
T d1svva_ 185 TLADIARLTDMFYIGATKAGG--MFGEAL-IILNDALKPNARHLI-------------------------KQ-RGALMAK 235 (340)
T ss_dssp CHHHHHHHCSEEEEECTTTTC--SSCEEE-EECSGGGCTTHHHHH-------------------------HH-TTCCCTT
T ss_pred ccccccccceeeecCCccccc--cccccc-cccchhhhhhhhhhc-------------------------cc-ccCccch
Confidence 100 0113455556666444 222222 2222211 1010000 00 1222222
Q ss_pred cchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCC
Q 037063 408 SGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTR 487 (588)
Q Consensus 408 ~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~ 487 (588)
.. ++..+++..+...+.....++...++.++...|..+ +++++.|. .++++.+.+.+
T Consensus 236 ~~----~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------g~~~~~p~----~~~~v~~~~~~----- 292 (340)
T d1svva_ 236 GW----LLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC----------GIRLAWPS----ASNQLFPILEN----- 292 (340)
T ss_dssp TH----HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT----------TCCBSSCC----SSSEECBEEEH-----
T ss_pred hh----HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC----------CCeeecCC----CceEEEEeCCH-----
Confidence 22 222234444444446777888889999999999885 45566653 45677666543
Q ss_pred cCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHh
Q 037063 488 IDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRF 565 (588)
Q Consensus 488 i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~ 565 (588)
+...++++ .++....+.. ..|.+.||+|+++++|+||||+++++|+++
T Consensus 293 ---~~~~~l~~-~~~~~~~~~~--------------------------~~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 293 ---TMIAELNN-DFDMYTVEPL--------------------------KDGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp ---HHHHHHTT-TEECEEEEEE--------------------------TTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHH-hhhhhccccc--------------------------CCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 33344443 3332222110 134459999999999999999999999873
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.72 E-value=1.2e-15 Score=158.03 Aligned_cols=325 Identities=12% Similarity=0.088 Sum_probs=198.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
+..+++.++.+++++|.. .+++++|+|.|+.+++.++.+++||+|+ ..+.+.+. +. .....|++++++++
T Consensus 20 G~~~~~fE~~~~~~~~~~----~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~-~~----~~~~~g~~pv~~Di 90 (374)
T d1o69a_ 20 GEFVNRFEQSVKDYSKSE----NALALNSATAALHLALRVAGVKQDDIVLASSFTFIAS-VA----PICYLKAKPVFIDC 90 (374)
T ss_dssp THHHHHHHHHHHHHHCCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGG-TH----HHHHTTCEEEEECB
T ss_pred CHHHHHHHHHHHHHHCcC----eEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhh-HH----HHhhccceeEeccc
Confidence 567889999999999995 2999999999999999999999999965 66777753 22 23456999999999
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCCCC--CCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSKDM--DTLGLS 333 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~d~--~~l~l~ 333 (588)
+......+.+..+.... ...+++++++.|. .|...++++| ++|+++|++||.|+||+.+... ..+|
T Consensus 91 ~~~~~~~~~~~~~~~~~------~~~~~~aii~~~~---~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G-- 159 (374)
T d1o69a_ 91 DETYNIDVDLLKLAIKE------CEKKPKALILTHL---YGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALG-- 159 (374)
T ss_dssp CTTSSBCHHHHHHHHHH------CSSCCCEEEEECG---GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETT--
T ss_pred ccccccccccccccchh------ccccccccccccc---ccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecC--
Confidence 83333333332221111 2267889998877 7999999999 9999999999999999887211 1222
Q ss_pred CCCCcEEEeccC--ccCCCCCCceEEEEEeCc-chhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccch
Q 037063 334 LFKPDFLICSFY--KIFGENPSGFGCLFVKKS-SASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGV 410 (588)
Q Consensus 334 ~~~~D~vv~S~~--K~~G~~P~G~G~L~v~~~-~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~ 410 (588)
.+ -|+.++||| |.++. .|.|+++.+++ ..++++..... |... . ... .+.+.|...-..-
T Consensus 160 ~~-gd~~~fSf~~~K~l~t--geGG~i~tnn~~~~~~~~~~~~~--g~~~--~--~~~---------~~~~~G~N~rm~e 221 (374)
T d1o69a_ 160 TF-GEFGVYSYNGNKIITT--SGGGMLIGKNKEKIEKARFYSTQ--AREN--C--LHY---------EHLDYGYNYRLSN 221 (374)
T ss_dssp SS-SSEEEEECCTTSSSCC--SSCEEEEESCHHHHHHHHHHTBT--CCCS--S--SSC---------CCSSCCCBCBCCH
T ss_pred CC-CceEEEeccCcccccc--ccceeehhhhHHHHHhhcccccc--cccc--c--ccc---------ccccCCccccccc
Confidence 11 499999998 77763 25577777754 44444332211 1100 0 000 1113332222221
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecC-------
Q 037063 411 SSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDW------- 483 (588)
Q Consensus 411 ~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~------- 483 (588)
.....++..+.. ++.+.++.+++++++.+.|..... + +..+... .....+.+.+...
T Consensus 222 ---i~Aaig~~qL~~--l~~~i~~r~~i~~~y~~~L~~~~~---------~-~~~~~~~-~s~~~~~~~~~~~~~~~~~~ 285 (374)
T d1o69a_ 222 ---VLGAIGVAQMEV--LEQRVLKKREIYEWYKEFLGEYFS---------F-LDELENS-RSNRWLSTALINFDKNELNA 285 (374)
T ss_dssp ---HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTTTEE---------C-CCCCTTE-ECCCSSEEEEESCCGGGSCC
T ss_pred ---hhhhhhHHHHhh--hhhhcchhHHHHHHHHhhcccccc---------c-cccccCC-CCChhheeeeeccccccccc
Confidence 122355556655 477788888899999999876311 0 0000000 0000011111000
Q ss_pred ---------CCC--CcCHHHHHHHHHhCCcEecccccc---Ccccccc--hHHHHHHHHhhhcCCCCCcCCccEEEEecC
Q 037063 484 ---------NGT--RIDPALVQKLADRHNISLSCGFLQ---NIFFSGE--YEQERVRVLETRSGTNETRSGVSVVTAALG 547 (588)
Q Consensus 484 ---------~g~--~i~~~~v~~~l~~~gI~v~~G~~c---~~~~~~~--~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg 547 (588)
... .-..+.+.+.|.++||.+|..... .+.+... ..-..+..+.+. .|.+-+|
T Consensus 286 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~-----------~i~LP~~ 354 (374)
T d1o69a_ 286 CQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQK-----------GICLPSG 354 (374)
T ss_dssp CCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHH-----------EEEECCC
T ss_pred cccccccchhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhC-----------EEECcCC
Confidence 000 012456888999999998865321 1111000 000112222222 8999999
Q ss_pred CCCCHHHHHHHHHHHHHhhh
Q 037063 548 CLTNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 548 ~~~t~eDv~~li~~l~~~l~ 567 (588)
...|.+||++.++.|.++++
T Consensus 355 ~~lt~~di~~I~~~I~~~lk 374 (374)
T d1o69a_ 355 TAMSKDDVYEISKLILKSIK 374 (374)
T ss_dssp TTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHC
Confidence 99999999999999999874
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.72 E-value=3.4e-16 Score=158.73 Aligned_cols=299 Identities=16% Similarity=0.146 Sum_probs=191.2
Q ss_pred HHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccCCCCc
Q 037063 183 KIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAWPNLR 262 (588)
Q Consensus 183 ~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~ 262 (588)
.+.++|+++-|+. ..+.++++.+|+..++.++ +++||+|+...+-+...+..+.+..++.|+++.+++..
T Consensus 2 aLE~~la~Leg~~----~a~~~sSGMaAi~~~l~~l-l~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~----- 71 (331)
T d1pffa_ 2 ALEGKIAKLEHAE----ACAATASGMGAIAASVWTF-LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA----- 71 (331)
T ss_dssp HHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----
T ss_pred HHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHH-hCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc-----
Confidence 4678899998873 2666788899998888888 89999977655544446666677888999999998764
Q ss_pred cCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HH-HHHcCcEEEEeCCCcCCCCCCCCCCCCCCCcEE
Q 037063 263 IHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SV-AAEKGWHVLLDATALGSKDMDTLGLSLFKPDFL 340 (588)
Q Consensus 263 i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~-a~~~g~~vvvDaa~~~~~d~~~l~l~~~~~D~v 340 (588)
|.+.++++++ ++|++|.+..++||+..+.|++.+ ++ ++++|++++||.+-..|....++++ ++|++
T Consensus 72 -d~~~~~~~i~--------~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl~~---GaDiV 139 (331)
T d1pffa_ 72 -VPGNIEKHLK--------PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDL---GVDIV 139 (331)
T ss_dssp -STTHHHHTCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGG---TCSEE
T ss_pred -chhhHhhhcc--------cccceeeeecccccccccccchhhhhhhhcccCceEEeecccccccccccccc---CCCEE
Confidence 6688888887 899999999999999999999988 76 5678999999999776644455542 29999
Q ss_pred EeccCccCC-CCCCceEEEEEeCcchhcccC--CC--CCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHH
Q 037063 341 ICSFYKIFG-ENPSGFGCLFVKKSSASVLSG--ST--SSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLV 415 (588)
Q Consensus 341 v~S~~K~~G-~~P~G~G~L~v~~~~~~~l~~--~~--~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~a 415 (588)
+.|..|+++ .+-.-.|+++++++.....+. .. .| . +.+... ...
T Consensus 140 v~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G--~--------------------------~l~p~~---a~l 188 (331)
T d1pffa_ 140 VHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITG--A--------------------------IISPHD---AWL 188 (331)
T ss_dssp EEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCC--C--------------------------CCCHHH---HHH
T ss_pred EecchhhcCCCCccccccccccccchhhhhhhhhhhccC--C--------------------------CCCHHH---HHH
Confidence 999999775 212226777777665443221 11 11 1 111111 123
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCC---C---------CCcccEEEEEeec
Q 037063 416 ECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKV---M---------FDRGPSLAFNVFD 482 (588)
Q Consensus 416 l~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~---~---------~~rg~iv~f~~~~ 482 (588)
+..+++.+... +++..+....+++||. + | |.| +|+-|.- + ...|++++|.+.+
T Consensus 189 l~rgl~Tl~~R-m~~~~~nA~~lA~~L~----~--h-------p~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~ 254 (331)
T d1pffa_ 189 ITRGTLTLDMR-VKRAAENAQKVAEFLH----E--H-------KAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG 254 (331)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHH----H--C-------TTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhhh----h--C-------CcEEeeccccccCccHHHHHhhcccccCcccceeecc
Confidence 34666655432 4555555555555554 3 2 223 4444421 1 1247899999864
Q ss_pred CCCCCcCHHHHHHHHHhCCcE---eccccc----cCcccccchHHHHHHHHhhhcCCCCCcCCc--cEEEEecCCCCCHH
Q 037063 483 WNGTRIDPALVQKLADRHNIS---LSCGFL----QNIFFSGEYEQERVRVLETRSGTNETRSGV--SVVTAALGCLTNFE 553 (588)
Q Consensus 483 ~~g~~i~~~~v~~~l~~~gI~---v~~G~~----c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~vRvSlg~~~t~e 553 (588)
.+...+++++..+. ++-|.. |+|...... ....... . ..|+ +.||+|.|. |
T Consensus 255 -------~~~~~~f~d~l~lf~~~~SlG~~~SLi~~p~~~~h~-~~~~e~~-~-------~~Gi~~~liRlsvGl----E 314 (331)
T d1pffa_ 255 -------LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHA-GVPKEER-E-------AAGLTDNLIRLSVGC----E 314 (331)
T ss_dssp -------HHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTST-TSCHHHH-H-------HTTCCTTEEEEECCS----S
T ss_pred -------HHHHHHHHHhCCcceecccCCCCceeEeCccccccc-cCCHHHH-H-------hcCCCcCeEEEEeee----C
Confidence 56677788876542 233322 111100000 0000000 1 1333 399999997 7
Q ss_pred HHHHHHHHHHHhhhh
Q 037063 554 DTYRLWAFVSRFLDA 568 (588)
Q Consensus 554 Dv~~li~~l~~~l~~ 568 (588)
|++.|++-|++.|++
T Consensus 315 ~~~DLi~Dl~~AL~~ 329 (331)
T d1pffa_ 315 NVQDIIDDLKQALDL 329 (331)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH
Confidence 777788777776664
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.71 E-value=4.7e-16 Score=158.72 Aligned_cols=341 Identities=13% Similarity=0.060 Sum_probs=229.3
Q ss_pred CCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCch--hHHHHHHHHHHHHHhCCC
Q 037063 118 IGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEE--SELESKIRKRIMDFMNIS 195 (588)
Q Consensus 118 a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~--~~~~~~~r~~ia~~lga~ 195 (588)
++-...|+.|++++...+... |-.+.+. ..+|++.+ .+++.-+.++..++||+.
T Consensus 30 aSEN~~S~~v~~a~~S~l~nk-----------------------yaeG~pg-~ryy~G~~~id~iE~la~~ra~~lF~a~ 85 (405)
T d1kl1a_ 30 ASENFVSRAVMEAQGSVLTNK-----------------------YAEGYPG-RRYYGGCEYVDIVEELARERAKQLFGAE 85 (405)
T ss_dssp TTCCCCCHHHHHHHTSGGGGC-----------------------CCCEETT-EESSSCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred ccCCcCCHHHHHHhcCcccCc-----------------------CcCCCCC-ccccCCchhHHHHHHHHHHHHHHHhCCC
Confidence 677789999999876554321 1112222 23345442 677777889999999994
Q ss_pred CCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-c---CCCchhHHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHHH
Q 037063 196 EDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-V---YDHENEAAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMKK 271 (588)
Q Consensus 196 ~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~---~e~~s~~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~ 271 (588)
|.-|=.-+++.|.-.+..++ ++|||+|+. + -.|-+ +.. ......+..++...+++.+++.||.+++++.
T Consensus 86 ---~anVqp~SGs~An~av~~al-l~pGD~im~l~l~~GGHls--hg~-~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~ 158 (405)
T d1kl1a_ 86 ---HANVQPHSGAQANMAVYFTV-LEHGDTVLGMNLSHGGHLT--HGS-PVNFSGVQYNFVAYGVDPETHVIDYDDVREK 158 (405)
T ss_dssp ---EEECCCSSHHHHHHHHHHHH-CCTTCEEEEECGGGTCCGG--GTC-TTSHHHHHSEEEEECBCTTTCSBCHHHHHHH
T ss_pred ---cceeeccCchHHHHHHHHHh-cCCCCEEEEeecccccccc--cCc-cccccceEEEEEEeccchhcccccHHHHHHH
Confidence 54555668888888999999 999999763 2 23332 111 0111223578888899878889999999999
Q ss_pred HhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-----CCCCCCCCCCCCCcEEEeccC
Q 037063 272 IVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS-----KDMDTLGLSLFKPDFLICSFY 345 (588)
Q Consensus 272 i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~-----~d~~~l~l~~~~~D~vv~S~~ 345 (588)
+.+ .+++||++.... .-..+|++++ ++|++.|+++++|++|..+ .-.++++ .+|++.+|.|
T Consensus 159 a~~-------~kPklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~----~aDvvt~tTh 225 (405)
T d1kl1a_ 159 ARL-------HRPKLIVAAASA--YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVP----YAHFVTTTTH 225 (405)
T ss_dssp HHH-------HCCSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT----TCSEEEEESS
T ss_pred HHh-------hCcceEEecccc--cccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhh----hhhheecccc
Confidence 984 578999887654 4567799999 9999999999999998775 2235554 3899999999
Q ss_pred ccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHH
Q 037063 346 KIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADA 425 (588)
Q Consensus 346 K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~ 425 (588)
|-|.. |.| |+++.+++..+++....+.+ -.|.+....+ +++..+|....+
T Consensus 226 KtlrG-Prg-g~I~~~~~~~~~i~~avfPg-------------------------~qggp~~~~i---Aa~Aval~Ea~~ 275 (405)
T d1kl1a_ 226 KTLRG-PRG-GMILCQEQFAKQIDKAIFPG-------------------------IQGGPLMHVI---AAKAVAFGEALQ 275 (405)
T ss_dssp STTCC-CSC-EEEEECHHHHHHHHHHHTTT-------------------------TCSSCCHHHH---HHHHHHHHHHHS
T ss_pred ccccC-CCC-ceEEecchhHHHHHhhhCcc-------------------------cccCcchhHH---HHHHHHHHHHhC
Confidence 95542 875 88888887766665443321 1222333333 676677765433
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEec
Q 037063 426 LGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLS 505 (588)
Q Consensus 426 ~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~ 505 (588)
-......+++...++.|.+.|.+. +++|.+.. ....++...+.... ++...+++.|++.||.+-
T Consensus 276 ~~fk~Ya~qvv~NAkaLa~~L~~~----------G~~vv~gg---Td~H~vlvdl~~~~---~~g~~ae~~Le~agI~~N 339 (405)
T d1kl1a_ 276 DDFKAYAKRVVDNAKRLASALQNE----------GFTLVSGG---TDNHLLLVDLRPQQ---LTGKTAEKVLDEVGITVN 339 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT----------TCEEGGGS---CSSSEEEEECGGGT---CCHHHHHHHHHHHTEECE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC----------CceeecCC---CccceeeccccccC---CcHHHHHHHHHHcCeEEc
Confidence 234677888888899999999884 46666432 34567777765422 678888999999999753
Q ss_pred cccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC----CCHHHHHHHHHHHHHhhhh
Q 037063 506 CGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL----TNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 506 ~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~----~t~eDv~~li~~l~~~l~~ 568 (588)
-- .-|+... +..-...||+..... -.++|+.++.++|.+.|+.
T Consensus 340 kn--~iP~d~~------------------~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~ 386 (405)
T d1kl1a_ 340 KN--TIPYDPE------------------SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp EC--CCTTCSS------------------CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred CC--cCCCCCC------------------CCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 11 0011000 001112799986433 2689999999999998864
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.71 E-value=2.7e-16 Score=163.70 Aligned_cols=304 Identities=12% Similarity=0.022 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW 258 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~ 258 (588)
++.+.+.+.+.+..|++-+.++|++|+|+++++.+++.++ ..+||.|++....+... ...++..|+.+..++.+.
T Consensus 68 ~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l-~~~gd~V~i~~P~y~~~----~~~~~~~g~~~~~~~~~~ 142 (389)
T d2gb3a1 68 ELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVI-ANPGDEILVLEPFYANY----NAFAKIAGVKLIPVTRRM 142 (389)
T ss_dssp HHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTHH----HHHHHHHTCEEEEEECCG
T ss_pred HHHHHHHHHHHHhcCCCcccceEEeccccccccccccccc-ccCCCeEEEeCCCCccc----cccccccCcccccccccc
Confidence 3333444444444455433445999999999999999999 89999976554443322 334566799999998874
Q ss_pred CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC-C---CCCCCC
Q 037063 259 PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG-S---KDMDTL 330 (588)
Q Consensus 259 ~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~-~---~d~~~l 330 (588)
.....+.+.+...+. +++++++++.++||||..++.++ | ++|+++++++|.|.+... . .....+
T Consensus 143 ~~~~~~~~~~~~~~~--------~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~ 214 (389)
T d2gb3a1 143 EEGFAIPQNLESFIN--------ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASAL 214 (389)
T ss_dssp GGTSCCCTTGGGGCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGG
T ss_pred ccccchhhhhhhhcc--------cCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEecccccccccccccccc
Confidence 444445444544444 78999999999999999999766 4 789999999999998322 1 101111
Q ss_pred CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcc-cCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 331 GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVL-SGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l-~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
. ......+++.|+.|.++.+..++|+++..++.+... .....+ ....+...
T Consensus 215 ~-~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~~~~~---------------------------~~~~~~~~ 266 (389)
T d2gb3a1 215 S-IESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQG---------------------------RLAPPLLE 266 (389)
T ss_dssp G-SCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHH---------------------------SCCCCHHH
T ss_pred c-cccccccccccccccccCcccceeeeeccchhHHHHHhhhhhc---------------------------cccccccc
Confidence 1 112246788899997775345689999877644322 111100 00111111
Q ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcC
Q 037063 410 VSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRID 489 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~ 489 (588)
. .+....+...++. ++.+.++.+..++.+.+.|.++ +......| ..+..+-+.++. .+
T Consensus 267 ~---~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~L~~~---------~~~~~~~p----~~g~~~~~~lp~-----~~ 324 (389)
T d2gb3a1 267 Q---IGSVGLLNLDDSF-FDFVRETYRERVETVLKKLEEH---------GLKRFTKP----SGAFYITAELPV-----ED 324 (389)
T ss_dssp H---HHHHHHHTCCHHH-HHHHHHHHHHHHHHHHHHHHHT---------TCCCBCCC----SBSSEEEEECSS-----SC
T ss_pred c---ccccccccccchh-cccccccccccchhhhhhhhhh---------ccccccCC----CceEEEEEeCCC-----CC
Confidence 1 1212222211121 5667777788888899999885 22222222 223455555544 23
Q ss_pred HHHH-HHHHHhC-----CcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 490 PALV-QKLADRH-----NISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 490 ~~~v-~~~l~~~-----gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
...+ .+++.+. ||.+.+|..+... . ..|..+||+|+. .+.|++++.++.|.
T Consensus 325 ~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~--------------~-------~~~~~~iRis~~--~~~~~l~~a~~~L~ 381 (389)
T d2gb3a1 325 AEEFARWMLTDFNMDGETTMVAPLRGFYLT--------------P-------GLGKKEIRIACV--LEKDLLSRAIDVLM 381 (389)
T ss_dssp HHHHHHHHHHSCCBTTEEEECEEGGGGCSS--------------T-------TTTSSEEEEECC--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhCCEEEEeCcccccC--------------C-------CCCCCEEEEEEc--CCHHHHHHHHHHHH
Confidence 4444 4565553 5666666433100 0 023349999975 58888888888888
Q ss_pred Hhhhh
Q 037063 564 RFLDA 568 (588)
Q Consensus 564 ~~l~~ 568 (588)
+.|++
T Consensus 382 ~~lk~ 386 (389)
T d2gb3a1 382 EGLKM 386 (389)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=5.8e-16 Score=158.81 Aligned_cols=342 Identities=12% Similarity=0.062 Sum_probs=225.6
Q ss_pred CCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCch--hHHHHHHHHHHHHHhCCC
Q 037063 118 IGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEE--SELESKIRKRIMDFMNIS 195 (588)
Q Consensus 118 a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~--~~~~~~~r~~ia~~lga~ 195 (588)
++-...|+.+++++...+... |..+.+. ...|++.+ .+++.-+.++..++||+.
T Consensus 33 aSEN~~S~~v~~a~~S~l~nk-----------------------YaeG~pg-~Ryy~G~~~iD~iE~la~~ra~~lF~a~ 88 (416)
T d1dfoa_ 33 ASENYTSPRVMQAQGSQLTNK-----------------------YAEGYPG-KRYYGGCEYVDIVEQLAIDRAKELFGAD 88 (416)
T ss_dssp TTCCCCCHHHHHHHTSGGGGC-----------------------CCCEETT-EESSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred cCcccCCHHHHHHhcCcccCc-----------------------ccCCCCC-CcccCCChhHHHHHHHHHHHHHHHhCCC
Confidence 677789999999875554321 1112222 33455543 677777889999999994
Q ss_pred CCCceEEEecCHHHHHHHHHHhCCCCCCCeEEE-cCCCchh-HHHHHHHHHHhcCCEEEEEeccCCCCccCHHHHHHHHh
Q 037063 196 EDDYTLVFTANQSSAFKLLAESYPFYSNPRLLT-VYDHENE-AAALMIESSKKRGARVSSAEFAWPNLRIHSGKLMKKIV 273 (588)
Q Consensus 196 ~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~~e~~s~-~~~~~~~~a~~~G~~v~~v~~~~~~~~i~~e~l~~~i~ 273 (588)
+.-|=..+++.|.-.+..++ ++|||+|+. +.++..- ++.. ..-+..+..++...+++ +++.||.+++++...
T Consensus 89 ---~anVqp~SGs~AN~av~~Al-l~pGD~Il~l~l~~GGHlshg~-~~~~~g~~~~~~~y~~d-~~~~IDyd~l~~~a~ 162 (416)
T d1dfoa_ 89 ---YANVQPHSGSQANFAVYTAL-LEPGDTVLGMNLAHGGHLTHGS-PVNFSGKLYNIVPYGID-ATGHIDYADLEKQAK 162 (416)
T ss_dssp ---EEECCCSSHHHHHHHHHHHH-CCTTCEEEEECTTTTCCGGGTC-TTSHHHHHSEEEEECBC-SSSSBCHHHHHHHHH
T ss_pred ---cceeecccCccHHHHHHHHh-cCCCCeeeeccccccccccccc-cccccCceEEEEecccC-CccCccHHHHHHHHH
Confidence 44555578888888898999 999999763 2222110 1111 11112234677777887 678899999999987
Q ss_pred hhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-----CCCCCCCCCCCCCcEEEeccCcc
Q 037063 274 GKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS-----KDMDTLGLSLFKPDFLICSFYKI 347 (588)
Q Consensus 274 ~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~-----~d~~~l~l~~~~~D~vv~S~~K~ 347 (588)
+ .+++||++.. +.....+|++++ ++|++.|+++++|++|..| .-.++++. +|++.+|+||-
T Consensus 163 ~-------~kPklIi~G~--S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~----aDvvt~tThKt 229 (416)
T d1dfoa_ 163 E-------HKPKMIIGGF--SAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH----AHVVTTTTHKT 229 (416)
T ss_dssp H-------HCCSEEEEEC--SSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT----SSEEEEESSST
T ss_pred H-------hccceEEecc--cccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc----cceeeeehhhc
Confidence 4 5789999875 346789999999 9999999999999998775 22355542 79999999995
Q ss_pred CCCCCCceEEEEEeC---cchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHH
Q 037063 348 FGENPSGFGCLFVKK---SSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHAD 424 (588)
Q Consensus 348 ~G~~P~G~G~L~v~~---~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~ 424 (588)
|.. |.| |+++.++ +..+++....+.+ -.|.+.... +++...+|....
T Consensus 230 lrG-Prg-giI~~~~~~~~~~~~i~~avfPg-------------------------~qggp~~~~---iaa~Aval~Ea~ 279 (416)
T d1dfoa_ 230 LAG-PRG-GLILAKGGSEELYKKLNSAVFPG-------------------------GQGGPLMHV---IAGKAVALKEAM 279 (416)
T ss_dssp TCC-CSC-EEEEESSCCHHHHHHHHHHHTTT-------------------------TCSSCCHHH---HHHHHHHHHHTT
T ss_pred ccC-CCc-eEEEeccchHhHHHHHHhhhCcc-------------------------cccCccHHH---HHHHHHHHHHHc
Confidence 542 765 8888774 3334443322221 112233333 366666776543
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEe
Q 037063 425 ALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISL 504 (588)
Q Consensus 425 ~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v 504 (588)
+-......+++...++.|.+.|.+. +++|.... ....++.+.+.+.. ++...+++.|++.||.+
T Consensus 280 ~~~fk~Y~~qvv~NA~~La~~L~~~----------G~~iv~gg---TdnHlvlvdl~~~~---~~G~~a~~~Le~~gI~~ 343 (416)
T d1dfoa_ 280 EPEFKTYQQQVAKNAKAMVEVFLER----------GYKVVSGG---TDNHLFLVDLVDKN---LTGKEADAALGRANITV 343 (416)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHT----------TCEEGGGS---CSSSEEEEECGGGT---CCHHHHHHHHHHTTEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhC----------CcccccCC---CCCceeEEEecccC---CCHHHHHHHHHHcCeEE
Confidence 3235677888888899999999884 56676432 34567777775432 77889999999999986
Q ss_pred ccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC----CHHHHHHHHHHHHHhhhh
Q 037063 505 SCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT----NFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 505 ~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~----t~eDv~~li~~l~~~l~~ 568 (588)
--- +-|+...+ ..-.+.|||.....| .++|+.++.++|.+.|+.
T Consensus 344 Nkn--~iP~d~~~------------------~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~ 391 (416)
T d1dfoa_ 344 NKN--SVPNDPKS------------------PFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS 391 (416)
T ss_dssp EEC--CCTTCSSC------------------TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred eCC--cCCCCCCC------------------CCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 321 11110000 011127999864333 679999999999998864
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.69 E-value=5.7e-15 Score=153.50 Aligned_cols=171 Identities=13% Similarity=0.052 Sum_probs=130.4
Q ss_pred cCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEE
Q 037063 173 YGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 173 ~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
|++....-.+.+.++|+++-|+. ..+.++++.+|+..++.++ +++||+||...+.+......+.....+.|+++.
T Consensus 52 YsR~~nPT~~~LE~~la~LE~~~----~a~~~~SGmaAi~~~~~~l-~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~ 126 (421)
T d2ctza1 52 YSRIMNPTVDVLEKRLAALEGGK----AALATASGHAAQFLALTTL-AQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVR 126 (421)
T ss_dssp CBTTBCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEE
T ss_pred ecCCCCHHHHHHHHHHHHHhCCC----eEEEecChHHHHHHHHHhh-cccccceeecCCcCCchhHHHHHHHhhccccce
Confidence 33344556678999999999883 2666777778888888888 899999887666555466666778889999999
Q ss_pred EEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCc-CCCCCCCC
Q 037063 253 SAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATAL-GSKDMDTL 330 (588)
Q Consensus 253 ~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~-~~~d~~~l 330 (588)
+++.+ -..+..++.++ ++|++|.+..++||+..+.|++.| ++||++|+.++||.+-. .|....++
T Consensus 127 ~~d~~-----~~~~~~~~~~~--------~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl 193 (421)
T d2ctza1 127 FTSRE-----ERPEEFLALTD--------EKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPL 193 (421)
T ss_dssp ECCTT-----CCHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGG
T ss_pred ecccc-----cCcchhccccC--------CCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEecccccccceecccc
Confidence 87653 13455555666 899999999999999999999999 99999999999999965 56445555
Q ss_pred CCCCCCCcEEEeccCccCCCCC-CceEEEEEeCcc
Q 037063 331 GLSLFKPDFLICSFYKIFGENP-SGFGCLFVKKSS 364 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~~G~~P-~G~G~L~v~~~~ 364 (588)
.+ ++|+++-|..|.+|.+. .=.|+++.+++.
T Consensus 194 ~~---GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~ 225 (421)
T d2ctza1 194 AW---GAALVTHSLTKWVGGHGAVIAGAIVDGGNF 225 (421)
T ss_dssp GG---TCSEEEEETTTTTTCSSCCCCEEEEECSCS
T ss_pred cc---CCcEEEEechhhccCCCCeEEEEEEcCCcc
Confidence 42 39999999999776211 116677666654
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=7.5e-16 Score=155.26 Aligned_cols=300 Identities=7% Similarity=-0.010 Sum_probs=178.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
.....+++++||+++|.+ .++|++|+|+|+.+++.++ .++|+.++.....+...... ...+...+..+..++.
T Consensus 33 ~p~~~~le~~lA~~~G~~----~~~~~~sGt~A~~~al~a~-~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~- 105 (343)
T d1m6sa_ 33 DPTINELERLAAETFGKE----AALFVPSGTMGNQVSIMAH-TQRGDEVILEADSHIFWYEV-GAMAVLSGVMPHPVPG- 105 (343)
T ss_dssp CHHHHHHHHHHHHHTTCS----EEEEESCHHHHHHHHHHHH-CCTTCEEEEETTCHHHHSST-THHHHHTCCEEEEECE-
T ss_pred CHHHHHHHHHHHHHHCCC----eEEEeCCHHHHHHHHHHHH-hccCCceeccccccceeeec-ccccccccceeecccc-
Confidence 456789999999999984 3899999999999999998 78899866444433212222 2334455666766665
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcce-EEEEeCCCCCCCccCCHHHH----HHHHHcCcEEEEeCCCcCCC----CCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRG-LFVFPLQSKVTGARYSYMWM----SVAAEKGWHVLLDATALGSK----DMD 328 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~-Lv~~~~~sn~tG~~~pl~~I----~~a~~~g~~vvvDaa~~~~~----d~~ 328 (588)
..+..+++.+++.+... .....++. +++...++++.|.+.|++.+ ++|+++|+.+++|+++.... ...
T Consensus 106 -~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~ 182 (343)
T d1m6sa_ 106 -KNGAMDPDDVRKAIRPR--NIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVP 182 (343)
T ss_dssp -ETTEECHHHHHHHSCCS--CTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCC
T ss_pred -ccCccCHHHHHHhhhhh--hcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccc
Confidence 45668999999998721 11123444 45555666777788887765 56789999999999865520 000
Q ss_pred CCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCcc
Q 037063 329 TLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSIS 408 (588)
Q Consensus 329 ~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~ 408 (588)
..+.. ...+..+++.+|..|. . +.|+.+..++.+......... ..++....
T Consensus 183 ~~~~~-~~~~~~~~~~~~~~~g-~-~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~ 233 (343)
T d1m6sa_ 183 VKEYA-GYADSVMFCLSKGLCA-P-VGSVVVGDRDFIERARKARKM--------------------------LGGGMRQA 233 (343)
T ss_dssp HHHHH-HTCSEEEEESSSTTCC-S-SCEEEEECHHHHHHHHHHHHH--------------------------HTCCCSST
T ss_pred hhhhc-cccccccccccccccc-c-ccccccccHHHHhhhHhhCcc--------------------------cccccchh
Confidence 00000 1145566666664441 2 455555555544322211100 01111212
Q ss_pred chhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCc
Q 037063 409 GVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRI 488 (588)
Q Consensus 409 ~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i 488 (588)
.. .....+...... ....+...+....+.+.+..+. ......| ..++++.+.+.+.. .
T Consensus 234 ~~----~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~----~~~~~v~~~~~~~~---~ 291 (343)
T d1m6sa_ 234 GV----LAAAGIIALTKM--VDRLKEDHENARFLALKLKEIG---------YSVNPED----VKTNMVILRTDNLK---V 291 (343)
T ss_dssp HH----HHHHHHHHHHHS--STTHHHHHHHHHHHHHHHHHHT---------CBCCGGG----CCSSEEEEECTTSS---S
T ss_pred HH----HHHhhhhhhhhh--HHHHHHHHHHHHHhhhHHHHhc---------cCccCCC----CCceEEEEEeCCCc---c
Confidence 11 111222222221 1222333444455555555541 1222222 23467777665422 5
Q ss_pred CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 489 DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 489 ~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
+...+.+.|.++||.+++. +.+.||++++..+|.||||++++.|++++++
T Consensus 292 ~a~~l~~~L~~~Gi~v~~~------------------------------~~~~iRi~~~~~~t~edid~~v~~l~~v~~~ 341 (343)
T d1m6sa_ 292 NAHGFIEALRNSGVLANAV------------------------------SDTEIRLVTHKDVSRNDIEEALNIFEKLFRK 341 (343)
T ss_dssp CHHHHHHHHHHHTEECEEE------------------------------ETTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCEEecC------------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 6778888888899988653 2238999999999999999999999998875
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.67 E-value=8.1e-15 Score=151.94 Aligned_cols=356 Identities=13% Similarity=0.049 Sum_probs=213.5
Q ss_pred CCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCc--hhHHHHHHHHHHHHHhCCC
Q 037063 118 IGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSE--ESELESKIRKRIMDFMNIS 195 (588)
Q Consensus 118 a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~~~~~~~~r~~ia~~lga~ 195 (588)
++-...|+.|++++...+.... | .+.+. ...|++. -.+++.-++++..++||++
T Consensus 34 aSEN~~S~~v~~algS~l~nkY-----a------------------eG~pg-~Ryy~G~~~iD~iE~la~~ra~~lF~~~ 89 (463)
T d2a7va1 34 ASENFCSRAALEALGSCLNNKY-----S------------------EGYPG-KRYYGGAEVVDEIELLCQRRALEAFDLD 89 (463)
T ss_dssp TTCCCCCHHHHHHHTSGGGTCC-----C------------------CC-------------CTHHHHHHHHHHHHHTTCC
T ss_pred ccCCcCCHHHHHHhcchhcccc-----c------------------CCCCC-ccccCCchhHHHHHHHHHHHHHHHhCCC
Confidence 6778999999999765553211 1 11122 2234443 2788888899999999998
Q ss_pred CCCceE-EEecCHHHHHHHHHHhCCCCCCCeEE-Ec---CCCchhHHHHHHHH--HHhcC--CEEEEEeccCCCCccCHH
Q 037063 196 EDDYTL-VFTANQSSAFKLLAESYPFYSNPRLL-TV---YDHENEAAALMIES--SKKRG--ARVSSAEFAWPNLRIHSG 266 (588)
Q Consensus 196 ~~e~~v-vft~g~T~al~lv~~s~~~~~gd~ll-~~---~e~~s~~~~~~~~~--a~~~G--~~v~~v~~~~~~~~i~~e 266 (588)
..+..| |=.-+++.|+-.+..++ ++|||+|+ .+ -.|- ++..+... ....| .++....++..++.||.+
T Consensus 90 ~a~w~vNVqp~SGs~An~av~~al-l~pgD~Im~l~l~~GGHl--shg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd 166 (463)
T d2a7va1 90 PAQWGVNVQPYSGSPANLAVYTAL-LQPHDRIMGLDLPDGGHL--THGYMSDVKRISATSIFFESMPYKLNPKTGLIDYN 166 (463)
T ss_dssp TTTEEEECCCSSHHHHHHHHHHHH-CCSCEECCC---------------------------------CCBCTTTCSBCHH
T ss_pred chhccCCccccccHHHHHHHHHHH-cCCCceEEeeccCcCccc--ccccccccccccceeeEeeeeeeeccCCCCcCcHH
Confidence 654322 33457788888888999 99999965 22 2222 12111000 01122 344555666677899999
Q ss_pred HHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-----CCCCCCCCCCCCCcEE
Q 037063 267 KLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS-----KDMDTLGLSLFKPDFL 340 (588)
Q Consensus 267 ~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~-----~d~~~l~l~~~~~D~v 340 (588)
++++...+ .+++||++.... .-..+|++++ ++|++.|+++++|++|.++ .-.+++. .+|++
T Consensus 167 ~~~~~a~~-------~kPklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~----~aDvv 233 (463)
T d2a7va1 167 QLALTARL-------FRPRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIV 233 (463)
T ss_dssp HHHHHHHH-------HCCSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEE
T ss_pred HHHHHHhh-------cCCceEEecccc--cccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhh----hhhhh
Confidence 99999874 578999887654 4467899999 9999999999999998775 2234554 27999
Q ss_pred EeccCc-cCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccc-cCCCCCccchhhHHHHHH
Q 037063 341 ICSFYK-IFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS-KFPESSISGVSSKLVECK 418 (588)
Q Consensus 341 v~S~~K-~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~-e~GT~~~~~~~~~~al~~ 418 (588)
.+|.|| +.| |.| |+++.+++... ..+.. +...... . ...++. ..|- -.|.+....+ ++++.
T Consensus 234 t~tTHKTlrG--Prg-GiIl~~~~~~~-~~~~~----~~~~~~~--~-~~~i~~---avFPg~qggph~h~i---Aa~Av 296 (463)
T d2a7va1 234 TTTTHKTLRG--ARS-GLIFYRKGVKA-VDPKT----GREIPYT--F-EDRINF---AVFPSLQGGPHNHAI---AAVAV 296 (463)
T ss_dssp EEESSGGGCS--CSC-EEEEEECSEEE-EETTT----EEEEECC--C-HHHHHH---HHTTTTCCSCCHHHH---HHHHH
T ss_pred hchhhhhhcC--CCc-eEEEEcccccc-ccccc----CccchhH--H-HHHhhh---hcCcccchhhhhhhH---HHHHH
Confidence 999999 556 875 88888875421 11110 0000000 0 000000 0110 1334444443 67777
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHHH
Q 037063 419 GLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLAD 498 (588)
Q Consensus 419 aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~ 498 (588)
++....+-......+++...++.|.+.|.+. +++|.+.. ....++.+.+.... ++...+++.|+
T Consensus 297 a~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~----------G~~vv~gg---TdnHlvlvdl~~~~---~~G~~ae~~Le 360 (463)
T d2a7va1 297 ALKQACTPMFREYSLQVLKNARAMADALLER----------GYSLVSGG---TDNHLVLVDLRPKG---LDGARAERVLE 360 (463)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----------TCEEGGGS---CSSSEEEEECTTTT---CCHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHhC----------CCeeecCC---CCCceeeeeccccC---CCHHHHHHHHH
Confidence 7766543335777888888888998888884 45665432 34567777764422 67889999999
Q ss_pred hCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC----CHHHHHHHHHHHHHhhh
Q 037063 499 RHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT----NFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 499 ~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~----t~eDv~~li~~l~~~l~ 567 (588)
+.||.+---.. |+- . .......|||.....| .++|+.++.++|.+.|+
T Consensus 361 ~~gI~~Nkn~i--P~D--~-----------------~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 361 LVSITANKNTC--PGD--R-----------------SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp HTTEECEEECC--TTC--C-----------------CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hccCccCCccC--CCC--C-----------------CCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99998642110 110 0 0011127999865433 57999999999998775
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.66 E-value=1.1e-16 Score=165.67 Aligned_cols=165 Identities=16% Similarity=0.057 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeE-EE-cCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 180 LESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRL-LT-VYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 180 ~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~l-l~-~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
..+++++..++.++.++.+ .++.|+|+++|+..++.++ .+++.+ +. +...|..+. ..++..|++++ +.+
T Consensus 51 ~~~~l~~~~~~~~~~~~~e-~~~~~~~~~~a~~~~l~al--~~~~~vi~~~~~~~~~~~~----~~~~l~g~~~v--~~~ 121 (366)
T d2aeua1 51 FAEKVNEYGLKHLGGDEND-KCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIE----RSCKIVNAKYF--ESD 121 (366)
T ss_dssp HHHHHHHHHHHHHTCCTTE-EEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHH----HHHHHTTCEEE--EES
T ss_pred hHHHHHHHHHHHccCCCcc-EEEEeCCHHHHHHHHHHHh--CCCCEEEEecCCCcchhHH----HHHHhcCCeEE--CCC
Confidence 4567888889999987653 6999999999999998886 466664 43 333333233 33455688753 332
Q ss_pred CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCC-CccCCHHHH-HHHHHcCcEEEEeCCCcCCC---CCCCCCC
Q 037063 258 WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVT-GARYSYMWM-SVAAEKGWHVLLDATALGSK---DMDTLGL 332 (588)
Q Consensus 258 ~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~t-G~~~pl~~I-~~a~~~g~~vvvDaa~~~~~---d~~~l~l 332 (588)
|+++|+++|+ ++|++|++.+++|++ +.+.++++| ++|+++|+++++|.++..+. ...+. .
T Consensus 122 ------d~e~l~~~i~--------~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~-~ 186 (366)
T d2aeua1 122 ------KVGEILNKID--------KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPP-A 186 (366)
T ss_dssp ------CHHHHHTTCC--------TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCC-H
T ss_pred ------CHHHHHHhcC--------CCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCC-H
Confidence 6788988887 889999999998864 456789999 99999999999999965431 11110 0
Q ss_pred CCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccC
Q 037063 333 SLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSG 370 (588)
Q Consensus 333 ~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~ 370 (588)
....+|++++|++|.+| +.++|+++.++++++.++.
T Consensus 187 ~~~~~di~~~S~sK~~~--g~~~G~i~~~~~~i~~~~~ 222 (366)
T d2aeua1 187 LKLGADLVVTSTDKLME--GPRGGLLAGKKELVDKIYI 222 (366)
T ss_dssp HHHTCSEEEEETTSSSS--SCSCEEEEEEHHHHHHHHH
T ss_pred hhcCceEEEeccccccc--ccceeEEEecHHHHHHHHH
Confidence 02238999999999887 4478999999999887754
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.65 E-value=1.1e-15 Score=160.44 Aligned_cols=298 Identities=12% Similarity=0.003 Sum_probs=176.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-------CCCCCeEEEcCCCchhHHHHHHHHHHhcCCE
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-------FYSNPRLLTVYDHENEAAALMIESSKKRGAR 250 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-------~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~ 250 (588)
.++.+.+|+.-...-|+..++..|++++|+|++|++++.++. ..||++||+..++++ .+.. .++..|.+
T Consensus 103 ~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~-~Y~~---~~~~~~~~ 178 (425)
T d2hoxa1 103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYP-VFRE---QTKYFDKK 178 (425)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCH-HHHH---HHHHSCBT
T ss_pred HHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccc-cHHH---HHHHcCCC
Confidence 345445555444444665566679999999999999998872 578999988877776 3332 33445554
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHHHHHHHcCcEEEEeCCCcCCCCCCCC
Q 037063 251 VSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWMSVAAEKGWHVLLDATALGSKDMDTL 330 (588)
Q Consensus 251 v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I~~a~~~g~~vvvDaa~~~~~d~~~l 330 (588)
...++. |.+.+++.++ +++++++++.++||||.+.. +-.+++.+|.|.+-..+. ..++
T Consensus 179 ~~~~~~-------D~~~~~~~~~--------~~~~ii~l~sPnNPtG~l~~------~v~~~~~~I~DEaY~~~~-f~~~ 236 (425)
T d2hoxa1 179 GYVWAG-------NAANYVNVSN--------PEQYIEMVTSPNNPEGLLRH------AVIKGCKSIYDMVYYWPH-YTPI 236 (425)
T ss_dssp TEEEEE-------EGGGGTTCSC--------GGGEEEEEESSCTTTCCCCC------CSSTTCEEEEECTTCSTT-TSCC
T ss_pred CCccCC-------CHHHHHhhCC--------CCceEEEEECCCCCCcchhh------hhhhCCEEEEeccccCcc-ccch
Confidence 444443 4566665555 78999999999999998642 334689999999854431 1111
Q ss_pred CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcch-hcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccc
Q 037063 331 GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSA-SVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISG 409 (588)
Q Consensus 331 ~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~-~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~ 409 (588)
......++++.|+.|.||++..++|+++++++.+ +++...... . ..|.+...+
T Consensus 237 -~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~--~-----------------------~~~vs~~~Q 290 (425)
T d2hoxa1 237 -KYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTK--N-----------------------TEGTPRETQ 290 (425)
T ss_dssp -CSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHH--H-----------------------TSSCCHHHH
T ss_pred -hhhcCCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhhcc--C-----------------------cccCCHHHH
Confidence 1223368999999999997567799999987643 333321100 0 011122222
Q ss_pred hhhHHHHHHHHHHHHHh---C---HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCC----------CCCCcc
Q 037063 410 VSSKLVECKGLDHADAL---G---LILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPK----------VMFDRG 473 (588)
Q Consensus 410 ~~~~~al~~aL~~l~~~---G---~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~----------~~~~rg 473 (588)
+....++....+.+... . ++...+++++..+++.+.|.+. +.+.+.... .....+
T Consensus 291 ~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~---------~~~~l~~~p~~~~~~f~~~~~~~~~ 361 (425)
T d2hoxa1 291 LRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQS---------DRFSYQELPQSEYCNYFRRMRPPSP 361 (425)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTS---------SSEECCCCCSCEEETTTTEEECCCC
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCceeeccCCccceeeeeeccCCCc
Confidence 21112222211221111 0 3444555555666777777764 222211100 001122
Q ss_pred cEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHH
Q 037063 474 PSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFE 553 (588)
Q Consensus 474 ~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~e 553 (588)
..+-+.... + +...+.++|.++||.+++|.... .+.++||||+. .+.|
T Consensus 362 ~f~wl~~~~-~----~~~~~~~lL~e~gI~v~pGs~FG-------------------------~~~~yvRisl~--~~~e 409 (425)
T d2hoxa1 362 SYAWVKCEW-E----EDKDCYQTFQNGRINTQNGVGFE-------------------------ASSRYVRLSLI--KTQD 409 (425)
T ss_dssp SEEEEEECS-G----GGCSHHHHHHHTTEECEEGGGGT-------------------------SCTTEEEEECS--SCHH
T ss_pred ceeeeeCCC-C----hHHHHHHHHHhCCEEEEechhcC-------------------------CCCCEEEEEec--CCHH
Confidence 233233221 1 12346788899999999985420 11239999964 5889
Q ss_pred HHHHHHHHHHHhhhh
Q 037063 554 DTYRLWAFVSRFLDA 568 (588)
Q Consensus 554 Dv~~li~~l~~~l~~ 568 (588)
+++++++.|++++++
T Consensus 410 ~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 410 DFDQLMYYLKDMVKA 424 (425)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999876
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.65 E-value=8e-15 Score=152.49 Aligned_cols=355 Identities=14% Similarity=0.054 Sum_probs=225.9
Q ss_pred CCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCch--hHHHHHHHHHHHHHhCCC
Q 037063 118 IGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEE--SELESKIRKRIMDFMNIS 195 (588)
Q Consensus 118 a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~--~~~~~~~r~~ia~~lga~ 195 (588)
++-...|+.|++++...+.... -.+.+. ...|++.+ .+++.-+.++..++||++
T Consensus 38 aSEN~~S~~v~~algS~l~nkY-----------------------aeG~pg-~Ryy~G~~~iD~iE~la~~ra~~lF~~~ 93 (470)
T d1rv3a_ 38 ASENFASRAVLEALGSCLNNKY-----------------------SLGYPG-QRYYGGTEHIDELETLCQKRALQAYGLD 93 (470)
T ss_dssp TTCCCCCHHHHHHHTSGGGTCC-----------------------CCEETT-EESSSCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCcCCHHHHHHhcchhcccc-----------------------cCCCCC-ccccCCchhHHHHHHHHHHHHHHHhCCC
Confidence 6777899999999765543211 112222 23455543 677777889999999997
Q ss_pred CCC-ceEEEecCHHHHHHHHHHhCCCCCCCeEEE-c---CCCchhHHHHH----HHHHHhcCCEEEEEeccCCCCccCHH
Q 037063 196 EDD-YTLVFTANQSSAFKLLAESYPFYSNPRLLT-V---YDHENEAAALM----IESSKKRGARVSSAEFAWPNLRIHSG 266 (588)
Q Consensus 196 ~~e-~~vvft~g~T~al~lv~~s~~~~~gd~ll~-~---~e~~s~~~~~~----~~~a~~~G~~v~~v~~~~~~~~i~~e 266 (588)
++. +.-|=.-+++.|...+..++ ++|||+|+. + -.|.+ +..+ ...+.....+....+++.+++.||.+
T Consensus 94 ~~~~~anVqp~SGs~An~av~~al-l~pgD~im~~~l~~GGHls--hg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd 170 (470)
T d1rv3a_ 94 PQCWGVNVQPYSGSPANFAVYTAL-VEPHGRIMGLDLPDGGHLT--HGFMTDKKKISATSIFFESMAYKVNPDTGYIDYD 170 (470)
T ss_dssp TTTEEEECCCSSHHHHHHHHHHHH-TCTTCEEEEECGGGTCCGG--GCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHH
T ss_pred hhhccccccccCCccHHHHHHHHh-cCCCCeEeeeccccCCccc--ccccccCCCcccccceeEeeEEEEecccCcccHH
Confidence 543 34444568899989999999 999999763 2 12322 1100 00011224678888998778999999
Q ss_pred HHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCC-----CCCCCCCCCCCCCcEE
Q 037063 267 KLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGS-----KDMDTLGLSLFKPDFL 340 (588)
Q Consensus 267 ~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~-----~d~~~l~l~~~~~D~v 340 (588)
++++.... .+++||++.... .-..+|++++ ++|++.|+++++|++|..| .-.++++ .+|++
T Consensus 171 ~l~~~a~~-------~kPklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~----~aDvv 237 (470)
T d1rv3a_ 171 RLEENARL-------FHPKLIIAGTSC--YSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVV 237 (470)
T ss_dssp HHHHHHHH-------HCCSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEE
T ss_pred HHHHHHHh-------hCcceEeechhh--ccccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhh----eeeee
Confidence 99999873 578999887654 4467899999 9999999999999998775 2235554 27999
Q ss_pred EeccCccC-CCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccccccc-ccccc-cCCCCCccchhhHHHHH
Q 037063 341 ICSFYKIF-GENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLD-ESSQS-KFPESSISGVSSKLVEC 417 (588)
Q Consensus 341 v~S~~K~~-G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~-~~~f~-e~GT~~~~~~~~~~al~ 417 (588)
.+|.||-| | |.| |+++.+++.-. ..+.. +. ... ..+..+- ...|- -.|.+....+ ++++
T Consensus 238 t~tTHKtlrG--Prg-GiI~~~~~~~~-~~~~~-~~-~~~---------~~~~~~i~~avFPg~qggph~~~I---Aa~A 299 (470)
T d1rv3a_ 238 TTTTHKTLRG--CRA-GMIFYRRGVRS-VDPKT-GK-EIL---------YNLESLINSAVFPGLQGGPHNHAI---AGVA 299 (470)
T ss_dssp EEESSGGGCC--CSC-EEEEEECSBCC----------CCB---------CCHHHHHHHHHTTTTCCSCCHHHH---HHHH
T ss_pred eeehhhhccC--Ccc-eEEEEcccccc-ccccc-cc-hhH---------HHHHHHHhhhcCccccccchhhHH---HHHH
Confidence 99999955 6 876 88888876421 11110 00 000 0000000 00120 1334444444 6776
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHHHHHHHH
Q 037063 418 KGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPALVQKLA 497 (588)
Q Consensus 418 ~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l 497 (588)
.++.....--.....+++...++.|.+.|.+. +++|.... ....++.+.+.... ++...+++.|
T Consensus 300 va~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~----------G~~v~~gg---TdnHlvlvdl~~~g---~~g~~ae~~L 363 (470)
T d1rv3a_ 300 VALKQAMTPEFKEYQRQVVANCRALSAALVEL----------GYKIVTGG---SDNHLILVDLRSKG---TDGGRAEKVL 363 (470)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----------TCEEGGGS---CSSSEEEEEGGGGT---CCHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC----------CceeccCC---CCCceEEEeecccC---CcHHHHHHHH
Confidence 77766533224677788888888888888873 45565422 34577777775422 7788999999
Q ss_pred HhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC----CCHHHHHHHHHHHHHhhh
Q 037063 498 DRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL----TNFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 498 ~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~----~t~eDv~~li~~l~~~l~ 567 (588)
++.||.+--- +-|+-. ...-...|||..... -.++|+.++.++|.+.|+
T Consensus 364 e~~gI~~Nkn--~iP~D~-------------------~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 364 EACSIACNKN--TCPGDK-------------------SALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp HHTTEECEEE--CCSSCS-------------------CTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCcEECCC--cCCCCC-------------------CCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999976421 111100 001112799986432 377999999999998875
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=3.9e-15 Score=153.83 Aligned_cols=172 Identities=12% Similarity=0.101 Sum_probs=126.3
Q ss_pred cCCchhHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEE
Q 037063 173 YGSEESELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVS 252 (588)
Q Consensus 173 ~g~~~~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~ 252 (588)
|++....-.+.+.++|+++-|.. + .+.++++..|+..++ .+ +.+||+|+.....+...+..+.....+.|+++.
T Consensus 49 YsR~gnPT~~~lE~~la~LE~~~---~-a~~~sSGmaAi~~~l-~~-l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~ 122 (393)
T d1n8pa_ 49 YSRSQNPNRENLERAVAALENAQ---Y-GLAFSSGSATTATIL-QS-LPQGSHAVSIGDVYGGTHRYFTKVANAHGVETS 122 (393)
T ss_dssp BTTTCCHHHHHHHHHHHHHTTCS---E-EEEESCHHHHHHHHH-HT-SCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCE
T ss_pred eeCCCChHHHHHHHHHHHHhCCc---e-EEEecCchhHHHhhh-hc-ccCCCeeeeeeeecccchhhhhhhhhcccceeE
Confidence 45555667789999999999873 3 455555577887665 55 688999765444333466677778888899988
Q ss_pred EEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHH----HcCcEEEEeCCCcCCCCC
Q 037063 253 SAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAA----EKGWHVLLDATALGSKDM 327 (588)
Q Consensus 253 ~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~----~~g~~vvvDaa~~~~~d~ 327 (588)
+++. +.++++++++ ++|++|.+..++||+..+.|++.| ++|| ++|++++||.+-..|...
T Consensus 123 ~~~~-------~~~~~~~~i~--------~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~ 187 (393)
T d1n8pa_ 123 FTND-------LLNDLPQLIK--------ENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS 187 (393)
T ss_dssp EESS-------HHHHHHHHSC--------SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC
T ss_pred Eeec-------chHHHHHHhh--------hhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccC
Confidence 8753 3467888887 899999999999999999999999 8888 678999999997776444
Q ss_pred CCCCCCCCCCcEEEeccCccCCCCC-CceEEEEEeCc-chhcc
Q 037063 328 DTLGLSLFKPDFLICSFYKIFGENP-SGFGCLFVKKS-SASVL 368 (588)
Q Consensus 328 ~~l~l~~~~~D~vv~S~~K~~G~~P-~G~G~L~v~~~-~~~~l 368 (588)
.++.+ ++|+++.|..|++|.+. .=.|+++.+++ +.+++
T Consensus 188 ~Pl~~---GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l 227 (393)
T d1n8pa_ 188 NPLNF---GADIVVHSATKYINGHSDVVLGVLATNNKPLYERL 227 (393)
T ss_dssp CGGGG---TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHH
T ss_pred Cchhh---CCCEEEEccccccCCCCccccceeeecchhHHHHH
Confidence 55542 39999999999776111 11566666654 33444
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.60 E-value=7.6e-14 Score=145.71 Aligned_cols=317 Identities=16% Similarity=0.102 Sum_probs=203.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEE-EcCCCchhHHHHHHHHHHhcCCEEEEEec
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLL-TVYDHENEAAALMIESSKKRGARVSSAEF 256 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll-~~~e~~s~~~~~~~~~a~~~G~~v~~v~~ 256 (588)
-+++-+.+..|+++.|.+.-. .-.-.|+|..+..+..+......++++ ...-|++ ...-+...|+..|.+++.++.
T Consensus 107 Lq~l~e~q~~l~eltGmd~~n--~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~-~~~v~~t~a~~~g~~vv~v~~ 183 (437)
T d1wyua1 107 LQATFEYQTMIAELAGLEIAN--ASMYDGATALAEGVLLALRETGRMGVLVSQGVHPE-YRAVLRAYLEAVGAKLLTLPL 183 (437)
T ss_dssp HHHHHHHHHHHHHHHTSSEEC--SCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHH-HHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHhhCCCccc--cCchHHHHHHHHHHHHHHhhhcccccccccccChH-HhhhhhhhcccceeeEEeeec
Confidence 577889999999999986321 333456776665555444333445544 4445554 455556778889999999998
Q ss_pred cCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcC--C-CCCCCCCC
Q 037063 257 AWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALG--S-KDMDTLGL 332 (588)
Q Consensus 257 ~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~--~-~d~~~l~l 332 (588)
+ . +..+.++ ++ +++..|+++.+ |..|.+.++++| +++|+.|..+++|+.... . +...++|
T Consensus 184 ~-~-~~~~~~~----~~--------~~~Aavmi~~P-nt~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~G- 247 (437)
T d1wyua1 184 E-G-GRTPLPE----VG--------EEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYG- 247 (437)
T ss_dssp B-T-TBCCCCC----CC--------TTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHT-
T ss_pred c-c-ccchhhh----hc--------cceeEEEEccc-cccccccchHHHHHHhhhccceEEeeechhhhhccccccccc-
Confidence 6 3 2222222 33 68899999888 558999999999 999999999888876322 2 2234455
Q ss_pred CCCCCcEEEeccCccCCCCCC-----ceEEEEEeCcchhcccCCCCCCCceEeeecCCCcc-cccccccc-cccccCCCC
Q 037063 333 SLFKPDFLICSFYKIFGENPS-----GFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEI-IELETLDE-SSQSKFPES 405 (588)
Q Consensus 333 ~~~~~D~vv~S~~K~~G~~P~-----G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~-~~~~~~~~-~~f~e~GT~ 405 (588)
+|+++++ ||-||. |. |.|++.+++++...++....| ..........+ ..+..+.. -|. +.+|.
T Consensus 248 ----aDi~~g~-~q~fg~-p~g~GGP~~G~~a~~~~l~r~lPgrivg---~s~d~~G~~~~~l~lqtreqhIrR-ekats 317 (437)
T d1wyua1 248 ----ADIAVGD-GQSLGL-PMGFGGPHFGFLATKKAFVRQLPGRLVS---ETVDVEGRRGFILTLQAREQYIRR-AKAKS 317 (437)
T ss_dssp ----CSEEEEE-CTTTTC-CCGGGCSCCEEEEECGGGGGGCCSCCEE---EEEBTTSCEEEEECCGGGSHHHHG-GGSSC
T ss_pred ----cceEeec-cceecc-ccCCCcCccccccccchhhccccccccc---cccccCCcccceeecccccccccc-ccccc
Confidence 9999999 554443 43 469999999988777766543 11111000000 11111111 022 56777
Q ss_pred CccchhhHHHHHHHH--HHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEeecC
Q 037063 406 SISGVSSKLVECKGL--DHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDW 483 (588)
Q Consensus 406 ~~~~~~~~~al~~aL--~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~ 483 (588)
|+.....+.++.++. .++-..|+.++.++....++|+.++|.++ ++++++.+.. .+-.|.+.-
T Consensus 318 nict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~---------~g~~~~~~~~-----~f~ef~v~~- 382 (437)
T d1wyua1 318 NITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV---------PGVRPFTPKP-----FFNEFALAL- 382 (437)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---------TTCEECSCSS-----BCSEEEEEC-
T ss_pred chhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhc---------CCeeccCCCC-----eeeEEEEEC-
Confidence 766543333333332 22333469999999999999999999884 5677665421 112243331
Q ss_pred CCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHH
Q 037063 484 NGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVS 563 (588)
Q Consensus 484 ~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~ 563 (588)
+ .+..++.+.|.++||...+-.+ + ..+...+.+++.-.+|.||||+|+++|+
T Consensus 383 ~---~~~~~i~k~L~d~G~~~~~~~~--~-----------------------~~~~~~lli~~TE~~tkeeiD~~v~al~ 434 (437)
T d1wyua1 383 P---KDPEAVRRALAERGFHGATPVP--R-----------------------EYGENLALFAATELHEEEDLLALREALK 434 (437)
T ss_dssp S---SCHHHHHHHHHHTTCCCCEECC--T-----------------------TSCSSEEEEECCTTCCHHHHHHHHHHHH
T ss_pred C---CCHHHHHHHHHhCCCCCCcccc--c-----------------------CCCCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 1 4578898989999997543211 0 0222389999999999999999999999
Q ss_pred Hhh
Q 037063 564 RFL 566 (588)
Q Consensus 564 ~~l 566 (588)
++|
T Consensus 435 eil 437 (437)
T d1wyua1 435 EVL 437 (437)
T ss_dssp HHC
T ss_pred HhC
Confidence 864
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.57 E-value=7.8e-14 Score=147.94 Aligned_cols=171 Identities=17% Similarity=0.105 Sum_probs=121.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEecc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFA 257 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~ 257 (588)
..-+.++++++++++|.+ + ++|++++|.|+.+++.++ .++||+|+....+.+ .. . .....|+..+.+..+
T Consensus 74 dpt~~~lE~~~a~l~G~e---~-al~~~SGt~An~~a~~~l-~~~Gd~Vi~~~~f~~-~~---~-~i~~~g~~~~~~~~~ 143 (456)
T d1c7ga_ 74 SENFYHLEKTVKELFGFK---H-IVPTHQGRGAENLLSQLA-IKPGQYVAGNMYFTT-TR---F-HQEKNGATFVDIVRD 143 (456)
T ss_dssp CHHHHHHHHHHHHHHCCS---E-EEEESSHHHHHHHHHHHH-CCTTEEEEESSCCHH-HH---H-HHHHTTEEEEECBCG
T ss_pred CchHHHHHHHHHHHhCCC---e-EEECCCHHHHHHHHHHHh-cCCCCeEecCcchHH-HH---H-HHHHcCceeeecccc
Confidence 455678999999999994 2 899999999999999999 899999887654443 11 1 123467777766442
Q ss_pred ---------CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCC-ccCCHHH---H-HHHHHcCcEEEEeCCCcC
Q 037063 258 ---------WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTG-ARYSYMW---M-SVAAEKGWHVLLDATALG 323 (588)
Q Consensus 258 ---------~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG-~~~pl~~---I-~~a~~~g~~vvvDaa~~~ 323 (588)
...+.+|+++|+++|+. ....++.++++...+|..| ..+|++. | ++|+++|+.+++|++++.
T Consensus 144 ~~~~~~~~~~~~~~~d~~~le~~I~~----~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~ 219 (456)
T d1c7ga_ 144 EAHDASLNLPFKGDIDLNKLATLIKE----KGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCV 219 (456)
T ss_dssp GGGCTTCCCSCTTCBCHHHHHHHHHH----HCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHH
T ss_pred ccccccccCCccccCCHHHHHHHhhh----cCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhh
Confidence 13467899999999983 2224677999999988864 5566554 5 789999999999999764
Q ss_pred C---------CCCCCCCCC------CCCCcEEEeccCccCCCCCCceEEEEEeCcc
Q 037063 324 S---------KDMDTLGLS------LFKPDFLICSFYKIFGENPSGFGCLFVKKSS 364 (588)
Q Consensus 324 ~---------~d~~~l~l~------~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~ 364 (588)
+ .......+. -..+|.+++|++|.++. |.| |+++.+++.
T Consensus 220 ~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~-~~G-G~i~~~~~~ 273 (456)
T d1c7ga_ 220 ENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLV-NIG-GFLCMNDEE 273 (456)
T ss_dssp HHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCC-SSC-EEEEESCHH
T ss_pred cchhhhcccccccCCCChhhhccccccccccEEEeccccccc-cce-eEEEcCCHH
Confidence 2 000110000 01279999999998874 444 777777643
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.55 E-value=7.9e-14 Score=145.52 Aligned_cols=299 Identities=11% Similarity=0.022 Sum_probs=179.0
Q ss_pred HHHHHHHHHhCC----CCCCceEEEecC--HH---HHHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEE
Q 037063 183 KIRKRIMDFMNI----SEDDYTLVFTAN--QS---SAFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSS 253 (588)
Q Consensus 183 ~~r~~ia~~lga----~~~e~~vvft~g--~T---~al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~ 253 (588)
++|+.|++++.- ..++..|+.|.+ ++ .++.+++..+ +++||+|+++..++.+. ...++..|++++.
T Consensus 75 ~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l-~~pGd~Vlv~~P~y~~y----~~~~~~~g~~~~~ 149 (401)
T d7aata_ 75 DFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRF-FKFSRDVYLPKPSWGNH----TPIFRDAGLQLQA 149 (401)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEEEESCCTTH----HHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhh-cCCCceEEEecCCCcch----hhHHHHcCCeEEE
Confidence 677777776532 111223555433 22 3566777778 89999977655544323 2345678999999
Q ss_pred EeccC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC-CCCC
Q 037063 254 AEFAW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG-SKDM 327 (588)
Q Consensus 254 v~~~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~-~~d~ 327 (588)
+|+.. .+...+.+.+.+.+.. ..+++++++++.++||||..++.++ | ++|+++++++|.|.+-.. ..+-
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~ 224 (401)
T d7aata_ 150 YRYYDPKTCSLDFTGAMEDISK-----IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGD 224 (401)
T ss_dssp EECEETTTTEECHHHHHHHHTT-----SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSC
T ss_pred EeccccccccccHHHHHHHHhc-----CCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCC
Confidence 99853 3456788888887751 2367899999999999999999887 4 789999999999998322 1000
Q ss_pred ---CCC---CCC-CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccc
Q 037063 328 ---DTL---GLS-LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS 400 (588)
Q Consensus 328 ---~~l---~l~-~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~ 400 (588)
... ... ...--+++.|+.|-++.+..++|++++..+.++.+....... .. . .+. .
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~-~~------------~-~~~--~-- 286 (401)
T d7aata_ 225 INRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQL-KI------------L-IRP--M-- 286 (401)
T ss_dssp HHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHH-HH------------H-HHH--H--
T ss_pred cccchhhhhhhhhhhcccceeEeccccceeeccccceeecchHHHHHHHHHHHHH-HH------------H-hhc--c--
Confidence 000 000 001235667999977754557999999988776443221000 00 0 000 0
Q ss_pred cCCCCCccchhhHHHHHHHHH------HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 401 KFPESSISGVSSKLVECKGLD------HADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 401 e~GT~~~~~~~~~~al~~aL~------~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
..+++.+.+ .++...+. .+... ++.+.++.+..++.+.+.|+++..+ ..+..+. ..++
T Consensus 287 ~~~~~~~~q----~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~~------~~~~~~~-----~~~G 350 (401)
T d7aata_ 287 YSNPPMNGA----RIASLILNTPELRKEWLVE-VKGMADRIISMRTQLVSNLKKEGSS------HNWQHIT-----DQIG 350 (401)
T ss_dssp HSSCCHHHH----HHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTCC------SCCHHHH-----HCCS
T ss_pred ccccchHHH----HHHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCC------CCcceEC-----CCCe
Confidence 011111111 11111221 11111 4566677777888888888886211 0111111 2345
Q ss_pred EEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHH
Q 037063 475 SLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFED 554 (588)
Q Consensus 475 iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eD 554 (588)
++.+ .+ ++.+.++++++++||.+-.| +|||+... +.++
T Consensus 351 ~F~~--~~-----ls~e~~~~L~~e~gV~~~pg----------------------------------~Ris~a~~-~~~~ 388 (401)
T d7aata_ 351 MFCF--TG-----LKPEQVERLTKEFSIYMTKD----------------------------------GRISVAGV-ASSN 388 (401)
T ss_dssp SEEE--CC-----CCHHHHHHHHHHHCEECCTT----------------------------------CEEEGGGC-CTTT
T ss_pred EEEe--cC-----CCHHHHHHHHHhCCEEECCC----------------------------------cEEEeccC-CHHH
Confidence 5444 22 45778889999999987543 59997644 5588
Q ss_pred HHHHHHHHHHhhh
Q 037063 555 TYRLWAFVSRFLD 567 (588)
Q Consensus 555 v~~li~~l~~~l~ 567 (588)
|++++++|.++++
T Consensus 389 i~~la~ai~~v~k 401 (401)
T d7aata_ 389 VGYLAHAIHQVTK 401 (401)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998764
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.46 E-value=4.5e-13 Score=140.21 Aligned_cols=300 Identities=13% Similarity=0.066 Sum_probs=176.7
Q ss_pred HHHHHHHHHhC------CCCCCceEEEecCHHHHHHHHHHhC------CCCCCCeEEEcCCCchhHHHHHHHHHHhcCCE
Q 037063 183 KIRKRIMDFMN------ISEDDYTLVFTANQSSAFKLLAESY------PFYSNPRLLTVYDHENEAAALMIESSKKRGAR 250 (588)
Q Consensus 183 ~~r~~ia~~lg------a~~~e~~vvft~g~T~al~lv~~s~------~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~ 250 (588)
++|+.|++++. .+++...++.|.+.+.++......+ -+++||+|++...+..+.. ..++..|++
T Consensus 78 ~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~----~~~~~~G~~ 153 (412)
T d1ajsa_ 78 EFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHN----GVFTTAGFK 153 (412)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHH----HHHHHTTCS
T ss_pred HHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhH----HHHHHcCCe
Confidence 67777777652 2234445667777776665544332 1689999876655554232 234556877
Q ss_pred EEEE-ecc-CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC-
Q 037063 251 VSSA-EFA-WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG- 323 (588)
Q Consensus 251 v~~v-~~~-~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~- 323 (588)
.+.+ +.. .....+|.+.+++.+.. ..+++++++++.++||||..++.++ | ++|+++|++|+.|.+..-
T Consensus 154 ~v~~~~~~~~~~~~~d~~~~~~~~~~-----~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l 228 (412)
T d1ajsa_ 154 DIRSYRYWDTEKRGLDLQGFLSDLEN-----APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGF 228 (412)
T ss_dssp CEEEEECEETTTTEECHHHHHHHHHH-----SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTT
T ss_pred EEEeecccccccccccHHHHHHHHHh-----ccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhh
Confidence 5444 332 13345677777766641 2368899999999999999999776 5 789999999999998432
Q ss_pred CCCC---CC----CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccc
Q 037063 324 SKDM---DT----LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDE 396 (588)
Q Consensus 324 ~~d~---~~----l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~ 396 (588)
..+- .. .........+++.|+.|-++.+..++|++++....++.+...... ..... ..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~---~~~~~-----------~~- 293 (412)
T d1ajsa_ 229 ASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQ---MQKIV-----------RV- 293 (412)
T ss_dssp TTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHH---HHHHH-----------HT-
T ss_pred hcCCcccchhhhhhhhhhcccccccccccccccCCCCCccccccchhHHHHHHHHHHH---HHHHh-----------hc-
Confidence 1000 00 000111246788899997775445699999988776544322100 00000 00
Q ss_pred cccccCCCCCccchhhHHHHHHHH------HHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe-EEEeCCCCC
Q 037063 397 SSQSKFPESSISGVSSKLVECKGL------DHADALGLILISNRARYLINWLANALMNLHHPHSETGIPL-VRIYGPKVM 469 (588)
Q Consensus 397 ~~f~e~GT~~~~~~~~~~al~~aL------~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~-v~i~~p~~~ 469 (588)
..+.++..+. .++...+ +.+... ++...++++..++.+.+.|.++. .++ +..+.
T Consensus 294 ----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~~l~~~L~~~~-------~~~~~~~i~---- 354 (412)
T d1ajsa_ 294 ----TWSNPPAQGA---RIVARTLSDPELFHEWTGN-VKTMADRILSMRSELRARLEALK-------TPGTWNHIT---- 354 (412)
T ss_dssp ----TTSSCCSHHH---HHHHHHHHSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTT-------CSSCCHHHH----
T ss_pred ----cccccchHHH---HHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhC-------CCCCeeeec----
Confidence 0011111111 1111111 122221 46667778888888889998862 111 11111
Q ss_pred CCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC
Q 037063 470 FDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL 549 (588)
Q Consensus 470 ~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~ 549 (588)
..++.+++ .+ ++.+.+.++++++||.+-.| .|+++..
T Consensus 355 -~~~G~F~~--~~-----ls~~~v~~L~~e~gV~~vpg----------------------------------~Ri~~ag- 391 (412)
T d1ajsa_ 355 -DQIGMFSF--TG-----LNPKQVEYLINQKHIYLLPS----------------------------------GRINMCG- 391 (412)
T ss_dssp -HCCSSEEE--CC-----CCHHHHHHHHHTTCEECCTT----------------------------------SEEEGGG-
T ss_pred -CCCeEEEe--cC-----CCHHHHHHHHHhCCEEEeCC----------------------------------CeEEecc-
Confidence 23444433 23 56788999999999976543 3888753
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q 037063 550 TNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 550 ~t~eDv~~li~~l~~~l~~ 568 (588)
.+.++|++++++|.+.+++
T Consensus 392 ~~~~~i~~~a~aI~~av~~ 410 (412)
T d1ajsa_ 392 LTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp CCTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 3568999999999988765
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=6.7e-14 Score=145.88 Aligned_cols=232 Identities=13% Similarity=0.061 Sum_probs=143.8
Q ss_pred hHHHHHhhhccC-CCCCCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 037063 95 QADRIRAQDYFH-LSLNNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQY 173 (588)
Q Consensus 95 ~~~~iR~~~f~~-l~~~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 173 (588)
.++..|+...+. +++.--+|.|..+..+.++.|.++..... .++... ..|
T Consensus 16 ~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~-----~~~~~~------------------------~~Y 66 (397)
T d3tata_ 16 LMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLN-----AQPHGA------------------------SLY 66 (397)
T ss_dssp HHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHT-----TSCCSS------------------------BCC
T ss_pred HHHHHhcCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHH-----hCcccC------------------------CCC
Confidence 455566544443 22244468888888888888888753221 111000 001
Q ss_pred CCchhHHHHHHHHHHHHHhCCCC----CCceEEEecCHHH----HHHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHH
Q 037063 174 GSEESELESKIRKRIMDFMNISE----DDYTLVFTANQSS----AFKLLAESYPFYSNPRLLTVYDHENEAAALMIESSK 245 (588)
Q Consensus 174 g~~~~~~~~~~r~~ia~~lga~~----~e~~vvft~g~T~----al~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~ 245 (588)
+-..+ ..++|+.|++++.-.. ++..|+.+.+++. ++.+++..+ +.+||+|+++.....+.. ..++
T Consensus 67 ~p~~G--~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~-~~pgd~Vlv~~P~y~~y~----~~~~ 139 (397)
T d3tata_ 67 LPMEG--LNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKR-YFPESGVWVSDPTWENHV----AIFA 139 (397)
T ss_dssp CCTTC--CHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHH-HCSSCCCEECSSCCTTHH----HHHH
T ss_pred CCccc--CHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhh-cCCCCcceecccCccccH----HHHH
Confidence 11111 1378888888775211 1123666655554 355666666 789999777666554332 3446
Q ss_pred hcCCEEEEEeccCC-CCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCC
Q 037063 246 KRGARVSSAEFAWP-NLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDAT 320 (588)
Q Consensus 246 ~~G~~v~~v~~~~~-~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa 320 (588)
..|++++.+|++.+ .+..+.+++.+.+. ...+++++++++.++||||..++.++ | ++|++++++++.|.+
T Consensus 140 ~~G~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~ 214 (397)
T d3tata_ 140 GAGFEVSTYPWYDEATNGVRFNDLLATLK-----TLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIA 214 (397)
T ss_dssp TTTCCCEECCCCCTTTSSCCHHHHHHHHT-----TCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBS
T ss_pred HcCCEEEEEecchhhccccchHHHHHHhh-----hcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehh
Confidence 78999999998633 34467777777665 22367899999999999999999887 4 789999999999998
Q ss_pred CcC-CCCCC----C--CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhc
Q 037063 321 ALG-SKDMD----T--LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASV 367 (588)
Q Consensus 321 ~~~-~~d~~----~--l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~ 367 (588)
... -.+.. . ........-+++.|+.|.++.+..++|++++....++.
T Consensus 215 Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~ 268 (397)
T d3tata_ 215 YQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEA 268 (397)
T ss_dssp CTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEECSSTTH
T ss_pred hhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccccccccchhHHHH
Confidence 322 11000 0 00001112367889999777544578999998877653
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.44 E-value=3e-12 Score=133.86 Aligned_cols=301 Identities=16% Similarity=0.179 Sum_probs=175.0
Q ss_pred HHHHHHHHHhCC------CCCCceEEEecCHHHHHHHHH--HhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEE
Q 037063 183 KIRKRIMDFMNI------SEDDYTLVFTANQSSAFKLLA--ESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSA 254 (588)
Q Consensus 183 ~~r~~ia~~lga------~~~e~~vvft~g~T~al~lv~--~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v 254 (588)
++|+.+++++.- .++...++-+.+++.++.+++ ..+ ..+||+|+++..+..+.. ..++..|++++.+
T Consensus 77 ~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gd~Vlip~P~~~~y~----~~~~~~g~~~~~~ 151 (412)
T d1yaaa_ 77 SLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSK-FFPDKLVYLSKPTWANHM----AIFENQGLKTATY 151 (412)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHH-HCTTCCEEEEESCCTTHH----HHHHTTTCCEEEE
T ss_pred HHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhc-cCCCCEEecccccCchhH----HHHHHcCCceecc
Confidence 677777776521 122211222344555544443 233 578999776555443232 3456789999999
Q ss_pred eccC-CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC-CCCC-
Q 037063 255 EFAW-PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG-SKDM- 327 (588)
Q Consensus 255 ~~~~-~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~-~~d~- 327 (588)
+... ....++.+.++..+.. .++++++++++.++||||..++.++ | ++|++++++++.|.+-.. ..+-
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~ 226 (412)
T d1yaaa_ 152 PYWANETKSLDLNGFLNAIQK-----APEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDL 226 (412)
T ss_dssp ECEETTTTEECHHHHHHHHHH-----SCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCH
T ss_pred cccccccccccchhhhccccc-----CCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCc
Confidence 9743 3455778888877762 2357889999999999999999666 5 789999999999998322 1000
Q ss_pred --CCC-------CCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCC-CceEeeecCCCccccccccccc
Q 037063 328 --DTL-------GLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSV-STIMGIEPSFSEIIELETLDES 397 (588)
Q Consensus 328 --~~l-------~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~-~g~v~~~~~~~~~~~~~~~~~~ 397 (588)
... .......-+++.|+.|-+|++..++|++++..+.+..+....... ...... .
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~---------~------ 291 (412)
T d1yaaa_ 227 DKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKI---------I------ 291 (412)
T ss_dssp HHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHH---------H------
T ss_pred ccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHH---------H------
Confidence 000 001111347788999988865667999999988765432211000 000000 0
Q ss_pred ccccCCCCCccchhhHHHHHHHHH------HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe-EEEeCCCCCC
Q 037063 398 SQSKFPESSISGVSSKLVECKGLD------HADALGLILISNRARYLINWLANALMNLHHPHSETGIPL-VRIYGPKVMF 470 (588)
Q Consensus 398 ~f~e~GT~~~~~~~~~~al~~aL~------~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~-v~i~~p~~~~ 470 (588)
+....+++.+.+. ++...+. ...+. ++.+.++++..++.+.+.|.++ |.+. +..+.
T Consensus 292 ~~~~~~~~~~~q~----~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~-------g~~~~~~~~~----- 354 (412)
T d1yaaa_ 292 RSEVSNPPAYGAK----IVAKLLETPELTEQWHKD-MVTMSSRITKMRHALRDHLVKL-------GTPGNWDHIV----- 354 (412)
T ss_dssp HTTTSSCCHHHHH----HHHHHHHSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-------TCSSCCTHHH-----
T ss_pred HHHhcCCChHHHH----HHHHHhcChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh-------CCCCCCceeC-----
Confidence 0000111212221 1112221 11111 4666677777788888888876 2221 11111
Q ss_pred CcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC
Q 037063 471 DRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT 550 (588)
Q Consensus 471 ~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~ 550 (588)
..+++.+| .+ ++.+.++++++++||.+-.| .|+|+...
T Consensus 355 ~~gG~F~~--~~-----ls~e~~~~L~~e~~V~~~~g----------------------------------~Ris~~g~- 392 (412)
T d1yaaa_ 355 NQCGMFSF--TG-----LTPQMVKRLEETHAVYLVAS----------------------------------GRASIAGL- 392 (412)
T ss_dssp HCCSSEEE--CC-----CCHHHHHHHHHHHCEECCTT----------------------------------SEEEGGGC-
T ss_pred CCceEEEe--cC-----cCHHHHHHHHHhCCEEECCC----------------------------------CEEEeccC-
Confidence 24555444 23 56788899999999976432 48887533
Q ss_pred CHHHHHHHHHHHHHhhh
Q 037063 551 NFEDTYRLWAFVSRFLD 567 (588)
Q Consensus 551 t~eDv~~li~~l~~~l~ 567 (588)
+.++|++++++|.+.++
T Consensus 393 ~~~~i~~l~~ai~~v~k 409 (412)
T d1yaaa_ 393 NQGNVEYVAKAIDEVVR 409 (412)
T ss_dssp CTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 55789999999988665
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2.8e-11 Score=125.97 Aligned_cols=332 Identities=11% Similarity=0.089 Sum_probs=208.3
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|..+..|||..+. |--.+.+.+++.+.+..-... + ...+ ....
T Consensus 37 D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~-~---------------------~~~~---------~~~~ 85 (404)
T d2byla1 37 DVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLT-S---------------------RAFY---------NNVL 85 (404)
T ss_dssp ETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCC-C---------------------TTEE---------ESSH
T ss_pred ECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCc-c---------------------cccc---------cchH
Confidence 3468899996653 556778899887666431110 0 0011 1223
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--------CCCCC-eEE-EcCCCchhHHHHHH---HHHHhcC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--------FYSNP-RLL-TVYDHENEAAALMI---ESSKKRG 248 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--------~~~gd-~ll-~~~e~~s~~~~~~~---~~a~~~G 248 (588)
..+.+.+.++.+.+ .+.|+.++++|+..+++... ...+. +++ ....+|......+. .-..+.+
T Consensus 86 ~~~~~~~~~~~~~~----~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~ 161 (404)
T d2byla1 86 GEYEEYITKLFNYH----KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDG 161 (404)
T ss_dssp HHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTT
T ss_pred HHHHHhhhhccccc----ccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccC
Confidence 45667778887662 49999999999887765421 12222 354 44555532221111 0011111
Q ss_pred -----CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEe
Q 037063 249 -----ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLD 318 (588)
Q Consensus 249 -----~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvD 318 (588)
..+..+|.+ |.+++++.+.. ++...|++.-+....|.+.| ++.| ++|+++|+++|+|
T Consensus 162 ~~p~~~~~~~~p~~------d~~~l~~~l~~-------~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~D 228 (404)
T d2byla1 162 FGPFMPGFDIIPYN------DLPALERALQD-------PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIAD 228 (404)
T ss_dssp SCSCCTTEEEECTT------CHHHHHHHHTS-------TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCCeeEeccc------CHHHHHHhcCC-------CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEee
Confidence 224445442 67889988862 56778888888888898888 8888 9999999999999
Q ss_pred CCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccc
Q 037063 319 ATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELE 392 (588)
Q Consensus 319 aa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~ 392 (588)
.++.. +. ....+++ .||++ .+-|-+|.+-.-+|++++++++.+.+.+...+ ++
T Consensus 229 EV~tGfgR~G~~~a~~~~gv---~PDi~--~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~--~T-------------- 287 (404)
T d2byla1 229 EIQTGLARTGRWLAVDYENV---RPDIV--LLGKALSGGLYPVSAVLCDDDIMLTIKPGEHF--ST-------------- 287 (404)
T ss_dssp CTTTTTTTTSSSSGGGGGTC---CCSEE--EECGGGGTTSSCCEEEEECHHHHTTSCTTSSC--CS--------------
T ss_pred ccccccccccccchhhhcCC---CCCEE--EECchhhCCCccceeeeechhhhhccCCCCCC--cC--------------
Confidence 99754 21 1122333 48987 56685542112379999999887766654432 11
Q ss_pred cccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCc
Q 037063 393 TLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDR 472 (588)
Q Consensus 393 ~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~r 472 (588)
| .| +..+ .++..+.|+.+++ +.+.++...+.+++.+.|.+|.++. +..++ .+
T Consensus 288 ------~--~g--npl~---~aaa~a~L~~i~~---~~l~~~~~~~g~~l~~~l~~l~~~~----i~~vR--------g~ 339 (404)
T d2byla1 288 ------Y--GG--NPLG---CRVAIAALEVLEE---ENLAENADKLGIILRNELMKLPSDV----VTAVR--------GK 339 (404)
T ss_dssp ------S--TT--CHHH---HHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHTSCTTT----EEEEE--------EE
T ss_pred ------C--Cc--CHHH---HHHHHHHHHHHHh---cCchhhhhHhhHHHHHHHHhhcccc----ceeee--------ec
Confidence 0 11 1111 2444566777766 5577888889999999999985431 11222 24
Q ss_pred ccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCH
Q 037063 473 GPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNF 552 (588)
Q Consensus 473 g~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~ 552 (588)
|.+.++.+.+.++ .....+...+.++||.++.. +...||+++.+..|.
T Consensus 340 Gl~~~i~~~~~~~--~~~~~~~~~l~~~Gvl~~~~------------------------------~~~~i~l~PpL~it~ 387 (404)
T d2byla1 340 GLLNAIVIKETKD--WDAWKVCLRLRDNGLLAKPT------------------------------HGDIIRFAPPLVIKE 387 (404)
T ss_dssp TTEEEEEECCCSS--CCHHHHHHHHHHTTEECEEE------------------------------ETTEEEECCCTTCCH
T ss_pred ccEEEEEEecCCc--hhHHHHHHHHHhCCeEEecC------------------------------CCCEEEEECCcCCCH
Confidence 5677777765433 23555666677889987542 112899999998999
Q ss_pred HHHHHHHHHHHHhhhh
Q 037063 553 EDTYRLWAFVSRFLDA 568 (588)
Q Consensus 553 eDv~~li~~l~~~l~~ 568 (588)
+||+++++.|.+.|.+
T Consensus 388 ~~id~~~~~l~~al~~ 403 (404)
T d2byla1 388 DELRESIEIINKTILS 403 (404)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999998764
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.43 E-value=1.6e-11 Score=127.12 Aligned_cols=327 Identities=13% Similarity=0.168 Sum_probs=200.9
Q ss_pred CCCCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|.++.-|||..+ .|--.+.+++++.+.+.. ....+. ... .+..
T Consensus 33 d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~-~~~~~~---------------------~~~---------~~~~ 81 (387)
T d1vefa1 33 DAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAET-LMAMPQ---------------------TLP---------TPMR 81 (387)
T ss_dssp ETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHH-CCCCCT---------------------TSC---------CHHH
T ss_pred ECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHh-hccccc---------------------ccC---------CchH
Confidence 346888999876 566677888887665543 111110 001 2333
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCC-CeEE-EcCCCchhHHHHHH-----HHHHh---cCCEE
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSN-PRLL-TVYDHENEAAALMI-----ESSKK---RGARV 251 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~g-d~ll-~~~e~~s~~~~~~~-----~~a~~---~G~~v 251 (588)
.++.+.+.+.... ....|.|+.++++|+..+++......+ .+|+ ....||......+. ..-.. .-..+
T Consensus 82 ~~la~~l~~~~~~--~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~ 159 (387)
T d1vefa1 82 GEFYRTLTAILPP--ELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPV 159 (387)
T ss_dssp HHHHHHHHHTSCT--TEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCE
T ss_pred HHHHHHhhhhccc--cceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCc
Confidence 3444444443332 334599999999998877664321123 3455 45556653332221 00000 01244
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCcC-CC
Q 037063 252 SSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATALG-SK 325 (588)
Q Consensus 252 ~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~~-~~ 325 (588)
..+|.+ |.+.|++.+. ++...|++.-+....|.+.| +++| ++|+++|+++|+|.++.. +.
T Consensus 160 ~~~p~~------d~~~l~~~~~--------~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR 225 (387)
T d1vefa1 160 EFIPYN------DVEALKRAVD--------EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGR 225 (387)
T ss_dssp EEECTT------CHHHHHHHCC--------TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred eEeCCC------CHHHHHHhcC--------CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCc
Confidence 555543 6788888887 67888888888888898877 7788 999999999999999754 21
Q ss_pred -----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccc
Q 037063 326 -----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQS 400 (588)
Q Consensus 326 -----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~ 400 (588)
-...++ ..||+++++ |.+|. ..-++.+.++++.++.+.+...+
T Consensus 226 ~G~~~~~~~~~---v~PDi~~~g--K~l~g-G~~~~~~~~~~~~~~~~~~~~~g-------------------------- 273 (387)
T d1vefa1 226 TGKRFAFEHFG---IVPDILTLA--KALGG-GVPLGVAVMREEVARSMPKGGHG-------------------------- 273 (387)
T ss_dssp TSSSSTHHHHT---CCCSEEEEC--GGGGT-TSSCEEEEEEHHHHHTSCTTSSC--------------------------
T ss_pred cCCCcccccCC---cCCceeeec--ccCCC-CccccccccceeeeeccccCCcc--------------------------
Confidence 012223 348988865 64431 12257777888776655544433
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEEEEe
Q 037063 401 KFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLAFNV 480 (588)
Q Consensus 401 e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~ 480 (588)
+|.+-..+ ..++..+.|+.+++ +.+.+++..+.+++.++|.++.++. +..++ ..|.+.++.+
T Consensus 274 --~T~~gnPl-a~aaa~a~L~~l~~---~~~~~~v~~~g~~l~~~L~~l~~~~----v~~vr--------g~Gl~~~ie~ 335 (387)
T d1vefa1 274 --TTFGGNPL-AMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPK----IREVR--------GMGLMVGLEL 335 (387)
T ss_dssp --CSSTTCHH-HHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTT----EEEEE--------EETTEEEEEE
T ss_pred --ccCCCCcc-hhhhcccchhhccc---ccccchHhhhhHHHHHHHHhcCCCc----eEEEe--------ecceEEEEEE
Confidence 11111111 12333455566554 5678888999999999999986542 22222 2456778887
Q ss_pred ecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHH
Q 037063 481 FDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWA 560 (588)
Q Consensus 481 ~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~ 560 (588)
.+. ....+.+++.++|+.+.. .|...||+++.+..|.+||+++++
T Consensus 336 ~~~-----~~~~~~~~~~~~g~l~~~------------------------------~g~~~ir~~Ppl~it~~~ld~~~~ 380 (387)
T d1vefa1 336 KEK-----AAPYIARLEKEHRVLALQ------------------------------AGPTVIRFLPPLVIEKEDLERVVE 380 (387)
T ss_dssp SSC-----SHHHHHHHHHHHCEECEE------------------------------SSTTEEEECCCTTCCHHHHHHHHH
T ss_pred eCC-----chHHHHHHHHHCCCeEEe------------------------------cCCCEEEEECCccCCHHHHHHHHH
Confidence 653 245566777777776532 112289999999999999999999
Q ss_pred HHHHhh
Q 037063 561 FVSRFL 566 (588)
Q Consensus 561 ~l~~~l 566 (588)
.|++.|
T Consensus 381 ~i~~aL 386 (387)
T d1vefa1 381 AVRAVL 386 (387)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998876
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=1.1e-12 Score=136.47 Aligned_cols=298 Identities=12% Similarity=0.118 Sum_probs=175.3
Q ss_pred HHHHHHHHHhC------CCCCCceEEEecCHHHHHHHHHHhC-CCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEe
Q 037063 183 KIRKRIMDFMN------ISEDDYTLVFTANQSSAFKLLAESY-PFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAE 255 (588)
Q Consensus 183 ~~r~~ia~~lg------a~~~e~~vvft~g~T~al~lv~~s~-~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~ 255 (588)
++|+.+++++. .+++...++.|.+++.++.++...+ .+.+||+|+++.....+. ...++..|++++.++
T Consensus 73 ~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y----~~~~~~~g~~~~~~~ 148 (396)
T d2q7wa1 73 EFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNH----KSVFNSAGLEVREYA 148 (396)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHH----HHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccc----hHHHHHcCCeeEecc
Confidence 67777777652 2223323455666666665554432 157899977654433322 234567899999999
Q ss_pred ccCCC-CccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCcC-CCC---
Q 037063 256 FAWPN-LRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATALG-SKD--- 326 (588)
Q Consensus 256 ~~~~~-~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~~-~~d--- 326 (588)
...++ ...+..++.+.+. ...+++++++++.++||||..++.++ | ++|+++++++|.|.+... ..+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~ 223 (396)
T d2q7wa1 149 YYDAENHTLDFDALINSLN-----EAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEE 223 (396)
T ss_dssp CEETTTTEECHHHHHHHHT-----TCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHH
T ss_pred cccccccccccchHHHHHH-----HhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCcc
Confidence 86433 3346666666554 23367899999999999999999886 4 789999999999998332 110
Q ss_pred -CCC--CCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCC
Q 037063 327 -MDT--LGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFP 403 (588)
Q Consensus 327 -~~~--l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~G 403 (588)
... ...+.....+++.|+.|-++.+..++|++++....++.+....... .. . . +....+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~-~~------------~-~----~~~~~~ 285 (396)
T d2q7wa1 224 DAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQM-KA------------A-I----RANYSN 285 (396)
T ss_dssp HTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHH-HH------------H-H----HTTTSS
T ss_pred CchHhhhhhhhcccccccccccccccccCCCccccccchhHHHHHHHhhhhh-hh------------h-h----hccccC
Confidence 000 0000112456778899977754567999999988765433211000 00 0 0 000011
Q ss_pred CCCccchhhHHHHHHHHH------HHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe-EEEeCCCCCCCcccEE
Q 037063 404 ESSISGVSSKLVECKGLD------HADALGLILISNRARYLINWLANALMNLHHPHSETGIPL-VRIYGPKVMFDRGPSL 476 (588)
Q Consensus 404 T~~~~~~~~~~al~~aL~------~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~-v~i~~p~~~~~rg~iv 476 (588)
++...+. ++...+. .+.+. ++.+.++.+..++.+.+.|.++ |.+. +..+. ..++.+
T Consensus 286 ~~~~~q~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~-------~~~~~~~~~~-----~~~G~F 348 (396)
T d2q7wa1 286 PPAHGAS----VVATILSNDALRAIWEQE-LTDMRQRIQRMRQLFVNTLQEK-------GANRDFSFII-----KQNGMF 348 (396)
T ss_dssp CCHHHHH----HHHHHHTSHHHHHHHHHH-HHHC-CHHHHHHHHHHHHHHHT-------TCCSCCTHHH-----HCCSSE
T ss_pred CCHHHHH----HHHHHhcCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh-------CCCCCcceec-----CCCeEE
Confidence 1111111 1111111 11111 4667778888889999999886 2111 11111 234544
Q ss_pred EEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHH
Q 037063 477 AFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTY 556 (588)
Q Consensus 477 ~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~ 556 (588)
.+ .+ ++.+.+.++++++||.+-.| -|+|+... +.++|+
T Consensus 349 ~~--~~-----l~~e~~~~L~~e~gV~~~~g----------------------------------~Ri~~a~l-~~~~i~ 386 (396)
T d2q7wa1 349 SF--SG-----LTKEQVLRLREEFGVYAVAS----------------------------------GRVNVAGM-TPDNMA 386 (396)
T ss_dssp EE--CC-----CCHHHHHHHHHHHCEECCTT----------------------------------CEEEGGGC-CTTTHH
T ss_pred Ee--eC-----CCHHHHHHHHHhCCEEECCC----------------------------------CEEEecCC-CHHHHH
Confidence 43 22 56788999999999976432 18887543 468899
Q ss_pred HHHHHHHHhh
Q 037063 557 RLWAFVSRFL 566 (588)
Q Consensus 557 ~li~~l~~~l 566 (588)
+++++|.+.|
T Consensus 387 ~~~~ai~~v~ 396 (396)
T d2q7wa1 387 PLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998764
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.40 E-value=5.5e-12 Score=133.84 Aligned_cols=171 Identities=13% Similarity=0.064 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-------eEEEcCCCchhHHHHHHHHHHhcCCEE
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-------RLLTVYDHENEAAALMIESSKKRGARV 251 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-------~ll~~~e~~s~~~~~~~~~a~~~G~~v 251 (588)
..+.++++++++++|.+ .++|++++|+|..+++..+ .++|+ .++....|+.+.. ......|...
T Consensus 75 ~~~~~le~~~a~l~g~~----~~~~~~sGt~A~~~a~~~~-~~~g~~~~~~~~~~i~~~~h~~t~~----~~~~~~g~~~ 145 (465)
T d1ax4a_ 75 RNYYDLKDKAKELFNYD----YIIPAHQGRGAENILFPVL-LKYKQKEGKAKNPVFISNFHFDTTA----AHVELNGCKA 145 (465)
T ss_dssp HHHHHHHHHHHHHHCCC----EEEEESSHHHHHHHHHHHH-HHHHHHTTCCSSCEEEESSCCHHHH----HHHHHTTCEE
T ss_pred hHHHHHHHHHHHHHCCC----EEEECCCcHHHHHHHHHHH-HHHHHhcCCCCCeEEeccchhhhhH----HHHHHcCCee
Confidence 45568999999999984 3999999999999888876 44332 2444444543222 2234568877
Q ss_pred EEEecc---------CCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCC-ccCCHH---HH-HHHHHcCcEEEE
Q 037063 252 SSAEFA---------WPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTG-ARYSYM---WM-SVAAEKGWHVLL 317 (588)
Q Consensus 252 ~~v~~~---------~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG-~~~pl~---~I-~~a~~~g~~vvv 317 (588)
+.+... ...+.+|.++|+++|++ .....+.+++++..+|..| ..+|.+ +| ++|+++|+++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~ 221 (465)
T d1ax4a_ 146 INIVTEKAFDSETYDDWKGDFDIKKLKENIAQ----HGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVM 221 (465)
T ss_dssp EECBCGGGGCTTSCCTTTTCBCHHHHHHHHHH----HCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred ecccccccCCCCCCCCccCccCHHHHHHHHHh----hccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEE
Confidence 766432 23567899999999973 2224567777777777655 445554 56 889999999999
Q ss_pred eCCCcCC-------CCCCCCCCCC--------CCCcEEEeccCccCCCCCCceEEEEEeCcc
Q 037063 318 DATALGS-------KDMDTLGLSL--------FKPDFLICSFYKIFGENPSGFGCLFVKKSS 364 (588)
Q Consensus 318 Daa~~~~-------~d~~~l~l~~--------~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~ 364 (588)
|+++..+ ......+.+. ...|.+.+|.+|.++ +.+.|++++++..
T Consensus 222 D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~--~~~~g~l~~~~~~ 281 (465)
T d1ax4a_ 222 DSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPL--LNIGGLVAIRDNE 281 (465)
T ss_dssp ECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTC--CSSCEEEEESSCH
T ss_pred ECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcc--cccceeEeecchH
Confidence 9997632 0001111110 116899999999777 4466999988753
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=6.9e-13 Score=141.13 Aligned_cols=322 Identities=11% Similarity=0.010 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCCe---------EEEcCCCchhHHHHHHHHHHhcCC
Q 037063 179 ELESKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNPR---------LLTVYDHENEAAALMIESSKKRGA 249 (588)
Q Consensus 179 ~~~~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd~---------ll~~~e~~s~~~~~~~~~a~~~G~ 249 (588)
..+.++++++++++|.+ .++|++++|+|+.+++.++ .++|++ ++....|+.+. ...+...|+
T Consensus 74 ~~~~~le~~~a~l~G~~----~~~~~~sGt~A~~~a~~~~-~~~g~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~G~ 144 (467)
T d2v1pa1 74 RSYYALAESVKNIFGYQ----YTIPTHQGRGAEQIYIPVL-IKKREQEKGLDRSKMVAFSNYFFDTT----QGHSQINGC 144 (467)
T ss_dssp HHHHHHHHHHHHHTCCS----EEEEECSSTTTHHHHHHHH-HHHHHHHHCCCTTTCEEEESSCCHHH----HHHHHHTTC
T ss_pred chHHHHHHHHHHHHCCC----EEEECCCCHHHHHHHHHHH-hhccceEecCCCCcEEEEeccccccc----HHHHHHcCC
Confidence 45678999999999984 3789999999998888877 444432 34444454322 223455799
Q ss_pred EEEEEeccC---------CCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCC-ccCCH---HHH-HHHHHcCcEE
Q 037063 250 RVSSAEFAW---------PNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTG-ARYSY---MWM-SVAAEKGWHV 315 (588)
Q Consensus 250 ~v~~v~~~~---------~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG-~~~pl---~~I-~~a~~~g~~v 315 (588)
+++.++.+. ..+.+|+++|++.+.. ...+.+.++++...++..| ..+|+ ++| ++|+++|+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l 220 (467)
T d2v1pa1 145 TVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEE----VGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPV 220 (467)
T ss_dssp EEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHH----HCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCE
T ss_pred eeeecccccccccccccccccCCCHHHHHHHHhh----cCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEE
Confidence 998887652 1357899999999973 2224578888888877664 55554 456 8999999999
Q ss_pred EEeCCCcCCC---------CCCCCCCC------CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEe
Q 037063 316 LLDATALGSK---------DMDTLGLS------LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMG 380 (588)
Q Consensus 316 vvDaa~~~~~---------d~~~l~l~------~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~ 380 (588)
++|+++..+. .....++. ...+|.+.+|.||.++. | +.|++..+++.+.......... +.
T Consensus 221 ~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~-~-~gg~i~~~~~~~~~~~~~~~~~-~~-- 295 (467)
T d2v1pa1 221 VMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMV-P-MGGLLCMKDDSFFDVYTECRTL-CV-- 295 (467)
T ss_dssp EEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCC-S-SCEEEEECSGGGHHHHHHHHHH-HH--
T ss_pred EEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCC-C-CceeEEecchhhhhHHHhhccc-cc--
Confidence 9999976420 00000000 01279999999997773 4 3477777776543221111000 00
Q ss_pred eecCCCcccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe
Q 037063 381 IEPSFSEIIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPL 460 (588)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~ 460 (588)
. ..|++...+.. ..++.+....+.....+...++....+++|.++|.+. +.+
T Consensus 296 -----------------~--~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------~~~- 347 (467)
T d2v1pa1 296 -----------------V--QEGFPTYGGLE-GGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-------GVV- 347 (467)
T ss_dssp -----------------H--TTSSCCCCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-------TCC-
T ss_pred -----------------c--cccCcchhhhH-HHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhc-------CCc-
Confidence 0 01111111110 0111111112222223556666678889999999885 222
Q ss_pred EEEeCCCCCCCcccEEEEEe----ecCCCC-CcCHHHHHHHHHhCCcEec-cccccCcccccchHHHHHHHHhhhcCCC-
Q 037063 461 VRIYGPKVMFDRGPSLAFNV----FDWNGT-RIDPALVQKLADRHNISLS-CGFLQNIFFSGEYEQERVRVLETRSGTN- 533 (588)
Q Consensus 461 v~i~~p~~~~~rg~iv~f~~----~~~~g~-~i~~~~v~~~l~~~gI~v~-~G~~c~~~~~~~~~~~~~~~l~~~~~~~- 533 (588)
+..+ .+..+.... ....+. ......+.+++.+.||... .|... .......+
T Consensus 348 --v~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~---------------~~~~~~~~~ 405 (467)
T d2v1pa1 348 --CQQA-----GGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFL---------------LGRDPKTGK 405 (467)
T ss_dssp --EEEE-----CSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHH---------------HCBCTTTCS
T ss_pred --ccCC-----CccceeecchhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccc---------------cccccccCC
Confidence 2111 111111111 111111 1112335677788888532 22100 00000000
Q ss_pred CCcCCccEEEEecC-CCCCHHHHHHHHHHHHHhhhh
Q 037063 534 ETRSGVSVVTAALG-CLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 534 ~~~~g~~~vRvSlg-~~~t~eDv~~li~~l~~~l~~ 568 (588)
........||+++. ...|.||||++++.|+++.+.
T Consensus 406 ~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~ 441 (467)
T d2v1pa1 406 QLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp BCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred ccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 00122238999986 345999999999999998754
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.37 E-value=6.6e-12 Score=130.21 Aligned_cols=336 Identities=14% Similarity=0.061 Sum_probs=190.4
Q ss_pred CCeeeecCCCCCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHHHHHHHHHH
Q 037063 110 NNYVCFDYIGHGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELESKIRKRIM 189 (588)
Q Consensus 110 ~~~vyLD~a~~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~r~~ia 189 (588)
.--+|.|..|..+.++.|.+++.+...... .|. | ... .|. .++|+.++
T Consensus 32 ~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~---~~~----------------Y----~p~---~G~------~~lr~aia 79 (394)
T d2ay1a_ 32 GVGVYKDATGHTPIMRAVHAAEQRMLETET---TKT----------------Y----AGL---SGE------PEFQKAMG 79 (394)
T ss_dssp CCCSCCCTTSCCCCCHHHHHHHHHHHHHCC---CCC----------------C----CCS---SCC------HHHHHHHH
T ss_pred cCCCccCCCCCCCCCHHHHHHHHHHhhCCC---CCC----------------C----CCC---CCC------HHHHHHHH
Confidence 334688888888888888887643332110 000 0 000 011 25666666
Q ss_pred HHh----CCCCCCceEEEecCHHHH--HHHHHHhCCCCCCCeEEEcCCCchhHHHHHHHHHHhcCCEEEEEeccC-CCCc
Q 037063 190 DFM----NISEDDYTLVFTANQSSA--FKLLAESYPFYSNPRLLTVYDHENEAAALMIESSKKRGARVSSAEFAW-PNLR 262 (588)
Q Consensus 190 ~~l----ga~~~e~~vvft~g~T~a--l~lv~~s~~~~~gd~ll~~~e~~s~~~~~~~~~a~~~G~~v~~v~~~~-~~~~ 262 (588)
+++ +.. .....+.|.+++.+ +.+.+..+ ..+||+|+.+..+..+. ...++..|++++.++... ....
T Consensus 80 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-~~~gd~V~~p~p~~~~y----~~~~~~~g~~~v~~~~~~~~~~~ 153 (394)
T d2ay1a_ 80 ELILGDGLKS-ETTATLATVGGTGALRQALELARM-ANPDLRVFVSDPTWPNH----VSIMNFMGLPVQTYRYFDAETRG 153 (394)
T ss_dssp HHHHGGGCCG-GGEEEEEEEHHHHHHHHHHHHHHH-HCTTCCEEEEESCCHHH----HHHHHHHTCCEEEEECEETTTTE
T ss_pred HHHhcccccc-ccccceeccCchHHHHHHHHHhhh-cCCceEEEEecccccch----HHHHHHcCCEEEEecccchhccc
Confidence 664 222 11234555555444 44544555 68899977665554423 234456799999998753 2344
Q ss_pred cCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHH---H-HHHHHcCcEEEEeCCCc-CCCC------CCCCC
Q 037063 263 IHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMW---M-SVAAEKGWHVLLDATAL-GSKD------MDTLG 331 (588)
Q Consensus 263 i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~---I-~~a~~~g~~vvvDaa~~-~~~d------~~~l~ 331 (588)
.+.+++++.+. ...+++++++++.++||||..++.++ | ++|++++++++.|.+.. +..+ .....
T Consensus 154 ~~~~~~~~~~~-----~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~ 228 (394)
T d2ay1a_ 154 VDFEGMKADLA-----AAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLI 228 (394)
T ss_dssp ECHHHHHHHHH-----TCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHH
T ss_pred ccchhHHHHHh-----hcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhh
Confidence 56666666654 22367899999999999999999776 5 78999999999999832 2110 00000
Q ss_pred CCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchh
Q 037063 332 LSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVS 411 (588)
Q Consensus 332 l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~ 411 (588)
......-+++.|+.|.++.+..++|++.+....++........ ... . .. .. ...++...+
T Consensus 229 ~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~---~~~----------~-~~---~~-~~~~~~~~~-- 288 (394)
T d2ay1a_ 229 ASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGA---MAF----------L-NR---QT-YSFPPFHGA-- 288 (394)
T ss_dssp HHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHH---HHH----------H-HH---TT-TSSCCCHHH--
T ss_pred hhhcccccccccccccccCCcccccchhhchhHHHHHHHhhhh---hHh----------h-hc---cc-ccchhHHHH--
Confidence 0001123566788897764356799999988776543221100 000 0 00 00 011111111
Q ss_pred hHHHHHHHH------HHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCe-EEEeCCCCCCCcccEEEEEeecCC
Q 037063 412 SKLVECKGL------DHADALGLILISNRARYLINWLANALMNLHHPHSETGIPL-VRIYGPKVMFDRGPSLAFNVFDWN 484 (588)
Q Consensus 412 ~~~al~~aL------~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~-v~i~~p~~~~~rg~iv~f~~~~~~ 484 (588)
+.+...+ +.+.+. ++.+.++....++.+.+.|.++. .+. +..+. ..++++.+. +
T Consensus 289 --~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~-------~~~~~~~~~-----~~~G~F~~~--~-- 349 (394)
T d2ay1a_ 289 --KIVSTVLTTPELRADWMAE-LEAVRSGMLRLREQLAGELRDLS-------GSDRFGFVA-----EHRGMFSRL--G-- 349 (394)
T ss_dssp --HHHHHHHHSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-------TSSTTTHHH-----HCCSSEEEC--C--
T ss_pred --HHHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhC-------CCCceeeEC-----CCceeEEec--C--
Confidence 1111111 111221 46677788888888888888751 110 11111 245554432 2
Q ss_pred CCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHH
Q 037063 485 GTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSR 564 (588)
Q Consensus 485 g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~ 564 (588)
++.+.++++++++||.+-.| .|||+... +.++|+++.++|.+
T Consensus 350 ---ls~~~~~~L~~~~~V~~~~g----------------------------------~Ri~~a~l-~~~~i~~l~~ai~~ 391 (394)
T d2ay1a_ 350 ---ATPEQVKRIKEEFGIYMVGD----------------------------------SRINIAGL-NDNTIPILARAIIE 391 (394)
T ss_dssp ---CCHHHHHHHHHHHCEECCTT----------------------------------CEEEGGGC-CTTTHHHHHHHHHH
T ss_pred ---cCHHHHHHHHHhCCEEecCC----------------------------------CEEEecCC-CHHHHHHHHHHHHH
Confidence 55788899999999987543 48887543 55899999999886
Q ss_pred h
Q 037063 565 F 565 (588)
Q Consensus 565 ~ 565 (588)
+
T Consensus 392 v 392 (394)
T d2ay1a_ 392 V 392 (394)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.34 E-value=4.5e-10 Score=116.72 Aligned_cols=331 Identities=8% Similarity=0.056 Sum_probs=189.9
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|..+..|||..+. |--.+.+++++.+.+....+.++ ..+ ....
T Consensus 35 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~----------------------~~~---------~~~~ 83 (404)
T d1z7da1 35 DVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSR----------------------AFF---------SVPL 83 (404)
T ss_dssp ETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCT----------------------TSE---------EHHH
T ss_pred ECCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCccc----------------------ccc---------hHHH
Confidence 3468899996553 44577888888666533111110 001 2344
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC--------CCCCC-eEE-EcCCCchhHHHHHHHHHHhcCC--
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP--------FYSNP-RLL-TVYDHENEAAALMIESSKKRGA-- 249 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~--------~~~gd-~ll-~~~e~~s~~~~~~~~~a~~~G~-- 249 (588)
+.+.+.+..+.+.+ .+.|+.++++|....+.... ...+. .++ ....+|...... .........
T Consensus 84 ~~~~~~~~~~~~~~----~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~-~~~~~~~~~~~ 158 (404)
T d1z7da1 84 GICERYLTNLLGYD----KVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGC-ISASTTKKCTS 158 (404)
T ss_dssp HHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------
T ss_pred HHHHHhhhhccccc----eeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccc-ccccccccccc
Confidence 56777777887762 38999999998876654321 11222 344 333343311111 111011111
Q ss_pred -------EEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEE
Q 037063 250 -------RVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLL 317 (588)
Q Consensus 250 -------~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvv 317 (588)
.+..+|.+ +.+.++..+. .++...|++.-+....|.+.| ++.| ++|+++|+++|+
T Consensus 159 ~~~~~~~~~~~~~~~------~~~~l~~~~~-------~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~ 225 (404)
T d1z7da1 159 NFGPFAPQFSKVPYD------DLEALEEELK-------DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVA 225 (404)
T ss_dssp -------CEEEECTT------CHHHHHHHHT-------STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCCccccccccc------hHHHHHHHhc-------CCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 11222221 4456666654 256788888888888999988 8999 999999999999
Q ss_pred eCCCcC-C-----CCCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCccccc
Q 037063 318 DATALG-S-----KDMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIEL 391 (588)
Q Consensus 318 Daa~~~-~-----~d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~ 391 (588)
|.++.. + .-...+| ..||++ .+-|-+|.+-.-+|++++++++.+.+.+...+
T Consensus 226 DEV~tGfgRtG~~~~~e~~g---v~PDiv--t~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~----------------- 283 (404)
T d1z7da1 226 DEVQTGLGRTGKLLCVHHYN---VKPDVI--LLGKALSGGHYPISAVLANDDIMLVIKPGEHG----------------- 283 (404)
T ss_dssp ECTTTTTTTTSSSSGGGGGT---CCCSEE--EECGGGGTTSSCCEEEEECHHHHTTCCTTCCC-----------------
T ss_pred EcCccCCCcccccccccccC---CCCCEE--EEcccccCCCCCcccccchHHHHccCCCCCcC-----------------
Confidence 999753 2 1122333 349988 45685542112379999999988766654332
Q ss_pred ccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEE-EeCCCCCC
Q 037063 392 ETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVR-IYGPKVMF 470 (588)
Q Consensus 392 ~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~-i~~p~~~~ 470 (588)
+|.+-..+ ..++..+.|+.+.+ +.+.++..++.+.+.+.|.++.-. .+.+. |-
T Consensus 284 -----------~T~~gnpl-~~aaa~a~L~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~-----~~~v~~vr------ 337 (404)
T d1z7da1 284 -----------STYGGNPL-AASICVEALNVLIN---EKLCENAEKLGGPFLENLKRELKD-----SKIVRDVR------ 337 (404)
T ss_dssp -----------CTTTTCHH-HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHTT-----CTTEEEEE------
T ss_pred -----------cCCCCCcc-hhhhhhhhhhhhhc---chhhhhhccchhHHHHHHHHHHhc-----CCCeEEEE------
Confidence 11111111 12344455665554 344555555555554444432110 13332 21
Q ss_pred CcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCC
Q 037063 471 DRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLT 550 (588)
Q Consensus 471 ~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~ 550 (588)
.+|.++.+.+.+.. .....+.+.+.++||.++.. +...||+++.+..
T Consensus 338 g~Gl~~~i~~~~~~---~~~~~~~~~l~~~Gl~~~~~------------------------------~~~~ir~~Ppl~i 384 (404)
T d1z7da1 338 GKGLLCAIEFKNEL---VNVLDICLKLKENGLITRDV------------------------------HDKTIRLTPPLCI 384 (404)
T ss_dssp EETTEEEEEECTTT---CCHHHHHHHHHHTTEECCEE------------------------------TTTEEEECCCTTC
T ss_pred eeCcEEEEEEcCCc---ccHHHHHHHHHhCCeEEecC------------------------------CCCEEEEECCcCC
Confidence 24678888776532 34556777778899987532 1128999999889
Q ss_pred CHHHHHHHHHHHHHhhhh
Q 037063 551 NFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 551 t~eDv~~li~~l~~~l~~ 568 (588)
|.+||+++++.|.+.|++
T Consensus 385 t~~~id~~~~~l~~alk~ 402 (404)
T d1z7da1 385 TKEQLDECTEIIVKTVKF 402 (404)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999998754
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=1.4e-09 Score=113.58 Aligned_cols=349 Identities=11% Similarity=0.084 Sum_probs=196.3
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|..+.-|||..+. |--.+.+.+++.+.+..-....+ .. ...+..
T Consensus 36 D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~------------------------~~------~~~~~~ 85 (425)
T d1sffa_ 36 DVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCF------------------------QV------LAYEPY 85 (425)
T ss_dssp ETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCT------------------------TT------EECHHH
T ss_pred eCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCccc------------------------cc------ccCcHH
Confidence 3368899998775 56678888888766533111100 00 013445
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCC-CeEE-EcCCCchhHHHHHHHHHHh-----c-----CC
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSN-PRLL-TVYDHENEAAALMIESSKK-----R-----GA 249 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~g-d~ll-~~~e~~s~~~~~~~~~a~~-----~-----G~ 249 (588)
.++-+++.+++.-+.. +.+.|+.++|+|+..+++...-..| .+|+ ....||.... +...+... . ..
T Consensus 86 ~~la~~l~~~~p~~~~-~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~-~~~~~t~~~~~~~~~~~~~~~ 163 (425)
T d1sffa_ 86 LELCEIMNQKVPGDFA-KKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTH-YTLALTGKVNPYSAGMGLMPG 163 (425)
T ss_dssp HHHHHHHHHHSSCSSC-EEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSH-HHHHHSSCCTTTTTTSCCCCS
T ss_pred HHHHHHHHhhhhhccc-ceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccc-cchhhcCCCCcccCCcccccC
Confidence 5677788888754322 3599999999998877654321123 3455 4555665332 21222100 0 01
Q ss_pred EEEEEeccCCCCccCHH----HHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCC
Q 037063 250 RVSSAEFAWPNLRIHSG----KLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDAT 320 (588)
Q Consensus 250 ~v~~v~~~~~~~~i~~e----~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa 320 (588)
.....+........... ...+.+.. .....+...|++.-+....|.+.| ++.| ++|+++|+++|+|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV 240 (425)
T d1sffa_ 164 HVYRALYPCPLHGISEDDAIASIHRIFKN---DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEV 240 (425)
T ss_dssp SEEEECCCBGGGTBCHHHHHHHHHHHHHH---TCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred CccccCCccccccccchhhHHHHHHHHHh---cccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccc
Confidence 12222221111111111 12222210 122246777888777777888765 3446 899999999999999
Q ss_pred CcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 321 ALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 321 ~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
+.. +. -...+| ..||+++ +-|.+|. ..-+|++++++++.+.+.+...+ +
T Consensus 241 ~tG~gR~g~~~a~~~~g---v~PDi~~--~gK~l~g-G~P~~av~~~~~i~~~~~~~~~~--~----------------- 295 (425)
T d1sffa_ 241 QSGAGRTGTLFAMEQMG---VAPDLTT--FAKSIAG-GFPLAGVTGRAEVMDAVAPGGLG--G----------------- 295 (425)
T ss_dssp TTTTTTTSSSSGGGGTT---SCCSEEE--ECGGGGT-SSCCEEEEEEHHHHTTSCTTSBC--C-----------------
T ss_pred cccCCCcchhhHHHhcC---CCcccee--cccccCC-CcceEEEEEcHHHHHhhCCCCCC--C-----------------
Confidence 775 31 122333 3499777 5685542 22389999999987766544322 1
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeE-EEeCCCCCCCcc
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLV-RIYGPKVMFDRG 473 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v-~i~~p~~~~~rg 473 (588)
|..-..+ ..++..+.|+.+++ +.+.++...+.+++.+.|.++.-. .+.+ .+- ..|
T Consensus 296 ---------T~~gnpl-~~aaa~a~L~~i~~---~~~~~~~~~~g~~l~~~l~~~~~~-----~~~v~~vr------g~G 351 (425)
T d1sffa_ 296 ---------TYAGNPI-ACVAALEVLKVFEQ---ENLLQKANDLGQKLKDGLLAIAEK-----HPEIGDVR------GLG 351 (425)
T ss_dssp ---------SSSSCHH-HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHT-----CTTEEEEE------EET
T ss_pred ---------CCCcCHH-HHHHHHHHHHHHHH---hhhhhhhhhhhhhhhhhhhhhHhh-----CCceEEEE------ccc
Confidence 1111111 12444566666665 456677777777777776654211 1222 222 246
Q ss_pred cEEEEEeecCC-CCCcCH---HHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCC
Q 037063 474 PSLAFNVFDWN-GTRIDP---ALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCL 549 (588)
Q Consensus 474 ~iv~f~~~~~~-g~~i~~---~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~ 549 (588)
.++.+.+.+.. ...-+. ..+.+.+-++||.+..+.. ....||+++.+.
T Consensus 352 l~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~----------------------------~~n~i~~~PpL~ 403 (425)
T d1sffa_ 352 AMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP----------------------------YYNVLRILVPLT 403 (425)
T ss_dssp TEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST----------------------------TSCEEEECCCTT
T ss_pred cEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCC----------------------------CCCEEEEECCCC
Confidence 77787764321 111122 3355666678998764311 112899999999
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q 037063 550 TNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 550 ~t~eDv~~li~~l~~~l~~ 568 (588)
.|++||+++++.|.+.+++
T Consensus 404 it~~eid~~l~~l~~al~e 422 (425)
T d1sffa_ 404 IEDAQIRQGLEIISQCFDE 422 (425)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988775
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=3e-09 Score=111.12 Aligned_cols=345 Identities=10% Similarity=0.033 Sum_probs=199.6
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|..+..|||..+. |--.+.+++++.+.+..-.+..+ . . ...+..
T Consensus 39 D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~------------------------~-~-----~~~~~~ 88 (429)
T d1s0aa_ 39 LSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMF------------------------G-G-----ITHAPA 88 (429)
T ss_dssp ETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCC------------------------S-S-----EECHHH
T ss_pred ECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCccc------------------------C-C-----ccchHH
Confidence 3367889996443 44577888887665533211111 0 0 012334
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC------CCCCCeEE-EcCCCchhHHHHHHHHHHh--------
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP------FYSNPRLL-TVYDHENEAAALMIESSKK-------- 246 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~------~~~gd~ll-~~~e~~s~~~~~~~~~a~~-------- 246 (588)
.++.+++.+....+- ..+.|+.++++|+..++.... -....+|+ ....||......+ .....
T Consensus 89 ~~l~~~l~~~~~~~~--~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~-~~t~~~~~~~~~~ 165 (429)
T d1s0aa_ 89 IELCRKLVAMTPQPL--ECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAM-SVCDPDNSMHSLW 165 (429)
T ss_dssp HHHHHHHHHHSCTTC--CEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHH-TTSCTTTTTGGGG
T ss_pred HHHHHHHHhhhccCc--ceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhh-hhcCCcccccccc
Confidence 456667777766542 359999999999876664331 01223555 5556665332211 11000
Q ss_pred --cCCEEEEEeccCC--CCcc---CHHHHHHHHhhhccccCCCcceEEEEeCC-CCCCCccC-C---HHHH-HHHHHcCc
Q 037063 247 --RGARVSSAEFAWP--NLRI---HSGKLMKKIVGKRKKKKKKKRGLFVFPLQ-SKVTGARY-S---YMWM-SVAAEKGW 313 (588)
Q Consensus 247 --~G~~v~~v~~~~~--~~~i---~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~-sn~tG~~~-p---l~~I-~~a~~~g~ 313 (588)
........|.... .... +.+++++.+.. ..++...|++.-+ .+.-|... | ++.| ++|+++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gi 240 (429)
T d1s0aa_ 166 KGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAA-----HRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI 240 (429)
T ss_dssp TTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHH-----HTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTC
T ss_pred Cccccccccccccccccccccchhhhhhhhhhhhh-----cCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCc
Confidence 0111222222111 1112 34445554441 1255666666644 45556644 4 5567 99999999
Q ss_pred EEEEeCCCcC-CC-----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCc
Q 037063 314 HVLLDATALG-SK-----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSE 387 (588)
Q Consensus 314 ~vvvDaa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~ 387 (588)
++|+|.++.. +. -...++ ..||+++.+ |-+|.+-.-+|++++++++.+.+.+...+.
T Consensus 241 llI~DEV~tGfGRtG~~~~~~~~~---v~PDi~~~g--K~l~gG~~p~~av~~~~~i~~~~~~~~~~~------------ 303 (429)
T d1s0aa_ 241 LLIADEIATGFGRTGKLFACEHAE---IAPDILCLG--KALTGGTMTLSATLTTREVAETISNGEAGC------------ 303 (429)
T ss_dssp EEEEECTTTTTTTTSSSSGGGGGT---CCCSEEEEC--GGGGTSSSCCEEEEECHHHHHHHHTSTTSS------------
T ss_pred ceehhhccccccccccccccccce---ecccccccc--cccccccccccchhhHHHHHhccCCCCCcc------------
Confidence 9999999764 21 112233 348988765 633211234799999999877664322110
Q ss_pred ccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEE-EeCC
Q 037063 388 IIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVR-IYGP 466 (588)
Q Consensus 388 ~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~-i~~p 466 (588)
|.-.+|..-..+ ..++..+.|+.+++ +++.++++++.++|.++|.+|... +.|. +-
T Consensus 304 -----------~~~~~T~~gnp~-~~aaa~a~L~~i~~---~~~~~~~~~~g~~l~~~L~~l~~~------~~v~~vr-- 360 (429)
T d1s0aa_ 304 -----------FMHGPTFMGNPL-ACAAANASLAILES---GDWQQQVADIEVQLREQLAPARDA------EMVADVR-- 360 (429)
T ss_dssp -----------CSCCCTTTTCHH-HHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHGGGGGC------TTEEEEE--
T ss_pred -----------eeecCCCCCCcc-cchhhhcccccccc---ccccchhhHHHHHHHHHHHHhccC------CceEEEe--
Confidence 001222222222 12444466666655 668899999999999999887422 2232 21
Q ss_pred CCCCCcccEEEEEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEec
Q 037063 467 KVMFDRGPSLAFNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAAL 546 (588)
Q Consensus 467 ~~~~~rg~iv~f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSl 546 (588)
-+|.++++.+... .....+.+.+.++|+.++.. . ..||+++
T Consensus 361 ----g~Gl~~~~e~~~~----~~~~~~~~~~~~~Gl~~~~~-----------------------------g--~~i~~~P 401 (429)
T d1s0aa_ 361 ----VLGAIGVVETTHP----VNMAALQKFFVEQGVWIRPF-----------------------------G--KLIYLMP 401 (429)
T ss_dssp ----EETTEEEEEESSC----BCHHHHHHHHHHTTEECCCB-----------------------------T--TEEEECC
T ss_pred ----ecccEEEEEecCc----ccHHHHHHHHHHCCcEEEec-----------------------------C--CEEEEeC
Confidence 2467888877643 34667888888889987642 1 1899999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhh
Q 037063 547 GCLTNFEDTYRLWAFVSRFLDAD 569 (588)
Q Consensus 547 g~~~t~eDv~~li~~l~~~l~~~ 569 (588)
.+-.|.+||+++++.|.+.|++.
T Consensus 402 pl~it~~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 402 PYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp CTTCCHHHHHHHHHHHHHHTSSG
T ss_pred CcCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999987653
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.18 E-value=4.6e-10 Score=117.47 Aligned_cols=337 Identities=11% Similarity=0.050 Sum_probs=187.6
Q ss_pred CCCCeeeecCCCC------CCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIGH------GLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~~------gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|..+.-|||..+. |.-.+.+++++.+.+...... . .. ....
T Consensus 48 D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~~~-----------------------~-~~---------~~~~ 94 (427)
T d2gsaa_ 48 DVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSF-----------------------G-AP---------CALE 94 (427)
T ss_dssp ETTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCSCC-----------------------S-SC---------CHHH
T ss_pred ECCCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcCcc-----------------------c-cc---------hhHH
Confidence 4478899998665 445678888886665331100 0 00 1233
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCC-CCCCCeEE-EcCCCchhHHHHHH---HHHHhcC--------
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYP-FYSNPRLL-TVYDHENEAAALMI---ESSKKRG-------- 248 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~-~~~gd~ll-~~~e~~s~~~~~~~---~~a~~~G-------- 248 (588)
..+.+.+.+...- ...+.|+.++++|+..++.... +....+|+ ....||......+. .-....+
T Consensus 95 ~~la~~~~~~~~~---~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~ 171 (427)
T d2gsaa_ 95 NVLAEMVNDAVPS---IEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVP 171 (427)
T ss_dssp HHHHHHHHHHSTT---CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSC
T ss_pred HHHHHHHHhhCCc---cccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCc
Confidence 4556666666543 2358999999999988776431 22233455 45556541110000 0000111
Q ss_pred ----CEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeC
Q 037063 249 ----ARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDA 319 (588)
Q Consensus 249 ----~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDa 319 (588)
.....++. -+.+++++++.+ ...+...|++.-+....|.+.| ++.| ++|+++|+++|+|.
T Consensus 172 ~~~~~~~~~~~~------~~~~~le~~~~~-----~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DE 240 (427)
T d2gsaa_ 172 KKTTANTLTTPY------NDLEAVKALFAE-----NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDE 240 (427)
T ss_dssp HHHHTTEEEECT------TCHHHHHHHHTT-----STTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred ccCccceeccCc------chHHHHHHHHHh-----CCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeecc
Confidence 12222222 378889999872 2246778888888888899998 8999 99999999999999
Q ss_pred CCcCC-C----CCCCCCCCCCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccc
Q 037063 320 TALGS-K----DMDTLGLSLFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETL 394 (588)
Q Consensus 320 a~~~~-~----d~~~l~l~~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~ 394 (588)
++..- . ....+| ..||+++++-----|+ | +|++++++++++.+.+....
T Consensus 241 v~tG~r~g~~~~~~~~g---i~PDi~~~gK~lggG~-p--~~a~~~~~~i~~~~~~~~~~-------------------- 294 (427)
T d2gsaa_ 241 VMTGFRIAYGGVQEKFG---VTPDLTTLGKIIGGGL-P--VGAYGGKREIMQLVAPAGPM-------------------- 294 (427)
T ss_dssp TTTBTTTBTTCHHHHTT---CCCSEEEECGGGGTTS-C--CEEEEECHHHHTTBTTTSSB--------------------
T ss_pred ccccceecccchHHhcC---CCHHHHhhhhccCCCc-c--eeeeeehHHHHHHhcccCCC--------------------
Confidence 98641 0 012233 3499988765222343 3 47788899887766542110
Q ss_pred cccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCccc
Q 037063 395 DESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGP 474 (588)
Q Consensus 395 ~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~ 474 (588)
+ -.+|.+-..+ ..++..++|+.+++ +.+.++++.+.++|.+.|.++.... +.+ +.+.+ .++
T Consensus 295 ----~-~~~T~~gnpl-a~AAala~Le~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~---~~~-~~v~~------~gg 355 (427)
T d2gsaa_ 295 ----Y-QAGTLSGNPL-AMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGLLAIAQET---GHA-ACGGQ------VSG 355 (427)
T ss_dssp ----C-CCCTTTTCHH-HHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHT---TCC-CEEEE------ETT
T ss_pred ----c-CCCCCCCCch-hhHHHHHhhHHhhh---hhHHhhhhHHHHHHHHHHHHHHhhc---CCC-cEEcc------cCC
Confidence 0 1223222222 12444455565554 3455666666677766665542111 111 11211 134
Q ss_pred EEEEEeecCC------CCCcCHH---HHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEe
Q 037063 475 SLAFNVFDWN------GTRIDPA---LVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAA 545 (588)
Q Consensus 475 iv~f~~~~~~------g~~i~~~---~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvS 545 (588)
++.+.+.... ....+.+ .+...+-++||.++++.. . .+-+
T Consensus 356 m~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~~----------------------------~--~~~~- 404 (427)
T d2gsaa_ 356 MFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF----------------------------E--AGFT- 404 (427)
T ss_dssp EEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT----------------------------S--CEEC-
T ss_pred eEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCCC----------------------------c--ceeC-
Confidence 4444432211 0111222 344455678998765411 1 2223
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhh
Q 037063 546 LGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 546 lg~~~t~eDv~~li~~l~~~l~~ 568 (588)
....|++||+++++++++.|++
T Consensus 405 -~l~~Te~dId~~l~al~~al~~ 426 (427)
T d2gsaa_ 405 -SLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp -CTTCCHHHHHHHHHHHHHHHTC
T ss_pred -CCCCCHHHHHHHHHHHHHHHHh
Confidence 4667999999999999998864
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.17 E-value=2e-08 Score=105.40 Aligned_cols=316 Identities=10% Similarity=-0.008 Sum_probs=190.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEe---cCHHHHHHHHHHhCCC--CCCC----e-EEEcCCCchhHHHHHHHHHHhc
Q 037063 178 SELESKIRKRIMDFMNISEDDYTLVFT---ANQSSAFKLLAESYPF--YSNP----R-LLTVYDHENEAAALMIESSKKR 247 (588)
Q Consensus 178 ~~~~~~~r~~ia~~lga~~~e~~vvft---~g~T~al~lv~~s~~~--~~gd----~-ll~~~e~~s~~~~~~~~~a~~~ 247 (588)
-+.+-+.+..|+++.|.+ |+-. .|+|.+...+..+... +.+. . ++....++. .. .......
T Consensus 105 LQalfEfQtmi~eLTGMd-----vaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~ 175 (471)
T d1wyub1 105 LRLMWELGEYLKALTGMD-----AITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHG-SN---PATASMA 175 (471)
T ss_dssp HHHHHHHHHHHHHHHTCS-----EEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCT-HH---HHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCC-----ccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCccccc-ce---eeeeecc
Confidence 567789999999999996 4332 3555443333222211 1121 1 334444443 22 2334556
Q ss_pred CCEEEEEeccCCCCccCHHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCCHHHH-HHHHHcCcEEEEeCCCcCCC-
Q 037063 248 GARVSSAEFAWPNLRIHSGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYSYMWM-SVAAEKGWHVLLDATALGSK- 325 (588)
Q Consensus 248 G~~v~~v~~~~~~~~i~~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~pl~~I-~~a~~~g~~vvvDaa~~~~~- 325 (588)
+.+++.++.+ ..+..+.+.++..+. .++..+++..+++.-+.....+.+ +++|+.|..+++|++.....
T Consensus 176 ~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~ 246 (471)
T d1wyub1 176 GYQVREIPSG-PEGEVDLEALKRELG--------PHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIM 246 (471)
T ss_dssp TCEEEEECBC-TTSSBCHHHHHHHCS--------TTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTT
T ss_pred cceeeccccc-ccccccchhhhhhhh--------ccccceeeccCCCcccccchhhhhHHHHHhccccccccccchhhhh
Confidence 8888888876 667788888887776 678888888776655444557788 89999999999998733320
Q ss_pred CCCCCCCCCCCCcEEEeccCccCCC----CCCceEEEEEeCcchhcccCCCCCC--CceEeeecCCCccccccccccccc
Q 037063 326 DMDTLGLSLFKPDFLICSFYKIFGE----NPSGFGCLFVKKSSASVLSGSTSSV--STIMGIEPSFSEIIELETLDESSQ 399 (588)
Q Consensus 326 d~~~l~l~~~~~D~vv~S~~K~~G~----~P~G~G~L~v~~~~~~~l~~~~~g~--~g~v~~~~~~~~~~~~~~~~~~~f 399 (588)
-+.+ ......|.++++.++.||. ++.|+|++.+++++...++-...++ .+... ...+. ...+|-
T Consensus 247 ~l~~--p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~-~~~RE-------qhIrRe 316 (471)
T d1wyub1 247 GWAR--PGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYL-DFDRP-------KSIGRV 316 (471)
T ss_dssp TTCC--HHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEE-ECCCT-------TCCCCS
T ss_pred hccc--cCcccccccccccccccccccccccccccceeehhhhhccCCCceecCCCccccc-cCCCc-------ccccch
Confidence 0111 1112379999999996653 2357999999999887776444331 01110 00000 000121
Q ss_pred ccCCCCCccchhhHHHHHH--HHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEEEeCCCCCCCcccEEE
Q 037063 400 SKFPESSISGVSSKLVECK--GLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVRIYGPKVMFDRGPSLA 477 (588)
Q Consensus 400 ~e~GT~~~~~~~~~~al~~--aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~i~~p~~~~~rg~iv~ 477 (588)
..+|.+.. .++.+ -+.++-..|+.++.+++...++|+.++|+. +++++..+.. ..--
T Consensus 317 -~actnqaL-----~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~----------~G~~~~~~~~-----ff~E 375 (471)
T d1wyub1 317 -RSFYGNFL-----ALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE----------KGYRVPYDGP-----SMHE 375 (471)
T ss_dssp -SSTTSCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------TTCBCSSCSS-----CCSC
T ss_pred -hhhhhhHH-----HHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh----------cCceeccCcc-----eeeE
Confidence 34444322 22322 333444557999999999999999999976 3444432211 1111
Q ss_pred EEeecCCCCCcCHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHH
Q 037063 478 FNVFDWNGTRIDPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYR 557 (588)
Q Consensus 478 f~~~~~~g~~i~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~ 557 (588)
|.+....| ++..++.+.|.++||.-.+..+ | ..+...+-|..--.+|.||||+
T Consensus 376 Fvv~~~~~--~~~~~i~k~L~~~G~~~~~~~~--p-----------------------~~~~~~llv~vTE~~tkedID~ 428 (471)
T d1wyub1 376 FVAQPPEG--FRALDLAKGLLELGFHPPTVYF--P-----------------------LIVKEALMVEPTETEAKETLEA 428 (471)
T ss_dssp EEEBCSTT--CCHHHHHHHHHHTTCCCCEESC--S-----------------------TTSTTCEEECCCTTSCHHHHHH
T ss_pred EeecCCCC--CCHHHHHHHHHHcCCCCCcccC--c-----------------------CCCCCeEEEecCCCCCHHHHHH
Confidence 44443332 6677788777778986432211 0 0122267788888899999999
Q ss_pred HHHHHHHhhhhh
Q 037063 558 LWAFVSRFLDAD 569 (588)
Q Consensus 558 li~~l~~~l~~~ 569 (588)
|+++|++++++-
T Consensus 429 lv~aL~~i~~e~ 440 (471)
T d1wyub1 429 FAEAMGALLKKP 440 (471)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHHHHhh
Confidence 999999988753
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.09 E-value=8.4e-09 Score=108.69 Aligned_cols=216 Identities=18% Similarity=0.138 Sum_probs=129.4
Q ss_pred HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEEEEeCCCcC-CC-----CCCCCCCC
Q 037063 265 SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHVLLDATALG-SK-----DMDTLGLS 333 (588)
Q Consensus 265 ~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~vvvDaa~~~-~~-----d~~~l~l~ 333 (588)
.+++++++.. ......+...|++.-+....|.+.| ++.| ++|+++|+++|+|.++.. +. ....+++.
T Consensus 232 ~~~l~~~~~~--~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~ 309 (461)
T d1ohwa_ 232 LEEVEDLIVK--YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLD 309 (461)
T ss_dssp HHHHHHHHHH--HHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCS
T ss_pred HHHHHHHHHH--HHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccc
Confidence 3455555531 0122367888999888888888765 5557 899999999999999764 21 11222222
Q ss_pred CCCCcEEEeccCccCCCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCcccccccccccccccCCCCCccchhhH
Q 037063 334 LFKPDFLICSFYKIFGENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSEIIELETLDESSQSKFPESSISGVSSK 413 (588)
Q Consensus 334 ~~~~D~vv~S~~K~~G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~f~e~GT~~~~~~~~~ 413 (588)
..||+++++ |-+| .|.+.....+ ....+... .+|..-..+ ..
T Consensus 310 -~~PDiv~~g--K~l~-----~g~~~~~~~~-~~~~~~~~----------------------------~~T~~g~p~-~~ 351 (461)
T d1ohwa_ 310 -DPADVMTFS--KKMM-----TGGFFHKEEF-RPNAPYRI----------------------------FNTWLGDPS-KN 351 (461)
T ss_dssp -SCCSEEEEC--GGGS-----SEEEEECGGG-SCSSTTSS----------------------------CCSCSSCHH-HH
T ss_pred -cCchhhhhh--hccc-----cccccccccc-cccccccc----------------------------ccccccccc-cc
Confidence 138988654 7444 2444443322 11111111 112211111 12
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHccc--CCCCCCCCCeEEEeCCCCCCCcccEEEEEeecCCCCCcCHH
Q 037063 414 LVECKGLDHADALGLILISNRARYLINWLANALMNLH--HPHSETGIPLVRIYGPKVMFDRGPSLAFNVFDWNGTRIDPA 491 (588)
Q Consensus 414 ~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~--h~~~~~g~~~v~i~~p~~~~~rg~iv~f~~~~~~g~~i~~~ 491 (588)
++..+.|+.+++ +++.++++.+.++|.++|.+|. |+. -+..|+ -+|.++++.+.+.. ...
T Consensus 352 aaa~a~l~~i~~---~~l~~~~~~~g~~l~~~l~~l~~~~~~---~i~~vr--------G~Gl~~~ie~~~~~----~~~ 413 (461)
T d1ohwa_ 352 LLLAEVINIIKR---EDLLSNAAHAGKVLLTGLLDLQARYPQ---FISRVR--------GRGTFCSFDTPDES----IRN 413 (461)
T ss_dssp HHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTT---TCEEEE--------EETTEEEEECSSHH----HHH
T ss_pred hhhcccchhhhh---hhHHHHHHHHHHHHHHHHHHHHhhCCC---ceEEee--------eeeEEEEEEcCCHH----HHH
Confidence 444466777665 4567777777888888877652 221 011222 24678888876521 134
Q ss_pred HHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 492 LVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVVTAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 492 ~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~vRvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
.+.+.+.++||.++.. |..+||+.+.+..|.+||+.+++.|.+.|++
T Consensus 414 ~i~~~~~~~Gll~~~~------------------------------~~~~ir~~PpL~it~~eid~~~~~l~~~l~e 460 (461)
T d1ohwa_ 414 KLISIARNKGVMLGGC------------------------------GDKSIRFRPTLVFRDHHAHLFLNIFSDILAD 460 (461)
T ss_dssp HHHHHHHHTTEECEEE------------------------------TTTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCeEEeeC------------------------------CCCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence 5667777789987542 1128999999999999999999999998764
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.02 E-value=1.2e-08 Score=106.62 Aligned_cols=348 Identities=11% Similarity=0.056 Sum_probs=189.3
Q ss_pred CCCCeeeecCCC------CCCCCHHHHHHhhhhcccCcCCCCCCCCCCCCCCCCCcccccccccccccccccCCchhHHH
Q 037063 108 SLNNYVCFDYIG------HGLFSYSQMHSCSSNVHSSAASTSSSSPLPSVQLEPPFFDICYRSVNLNSWLQYGSEESELE 181 (588)
Q Consensus 108 ~~~~~vyLD~a~------~gl~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~ 181 (588)
|..+.-|||..+ .|--.+.+.+++.+.+....+.++ ..+ .+..
T Consensus 37 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~---------------------~~~----------~~~~ 85 (431)
T d1zoda1 37 DADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFS---------------------EML----------SRPV 85 (431)
T ss_dssp CTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCT---------------------TCC----------CHHH
T ss_pred ECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhcccccc---------------------ccc----------cHHH
Confidence 336788999865 355567888888766643211110 000 2233
Q ss_pred HHHHHHHHHHhCCCCCCceEEEecCHHHHHHHHHHhCCCCCCC-eEE-EcCCCchhHHHHHHHHHHhc--------CCEE
Q 037063 182 SKIRKRIMDFMNISEDDYTLVFTANQSSAFKLLAESYPFYSNP-RLL-TVYDHENEAAALMIESSKKR--------GARV 251 (588)
Q Consensus 182 ~~~r~~ia~~lga~~~e~~vvft~g~T~al~lv~~s~~~~~gd-~ll-~~~e~~s~~~~~~~~~a~~~--------G~~v 251 (588)
.++-+++.++..-.. +.|.|+.++|+|+..+++....-.|. +|+ ....||......+ ...... ...+
T Consensus 86 ~~la~~L~~~~~~~~--~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~-~~~~~~~~~~~~~~~~~~ 162 (431)
T d1zoda1 86 VDLATRLANITPPGL--DRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAA-SATYSAGRKGVGPAAVGS 162 (431)
T ss_dssp HHHHHHHHHHSCTTC--CEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHH-HTCCSSCCSSSCCCCTTE
T ss_pred HHHHHHHHHhCCccc--ceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhh-cccccccccccCCcccCc
Confidence 456666777664322 35999999999988777643222343 454 5666665332221 110000 0122
Q ss_pred EEEeccCC---C-----CccC---HHHHHHHHhhhccccCCCcceEEEEeCCCCCCCccCC----HHHH-HHHHHcCcEE
Q 037063 252 SSAEFAWP---N-----LRIH---SGKLMKKIVGKRKKKKKKKRGLFVFPLQSKVTGARYS----YMWM-SVAAEKGWHV 315 (588)
Q Consensus 252 ~~v~~~~~---~-----~~i~---~e~l~~~i~~~~~~~~~~~t~Lv~~~~~sn~tG~~~p----l~~I-~~a~~~g~~v 315 (588)
..++.... . .... .+.+...+. +....+...|++.-+....|.+.| ++.| ++|+++|+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gill 238 (431)
T d1zoda1 163 FAIPAPFTYRPRFERNGAYDYLAELDYAFDLID----RQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLL 238 (431)
T ss_dssp EEECCCCTTSCCCEETTEECHHHHHHHHHHHHH----HHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEE
T ss_pred eeeeeecccccccccccchhhhhhHHHHHHHHH----HhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceE
Confidence 23322100 0 0011 223333332 222356788888888777888877 8889 9999999999
Q ss_pred EEeCCCcC-CC-----CCCCCCCCCCCCcEEEeccCccC--CCCCCceEEEEEeCcchhcccCCCCCCCceEeeecCCCc
Q 037063 316 LLDATALG-SK-----DMDTLGLSLFKPDFLICSFYKIF--GENPSGFGCLFVKKSSASVLSGSTSSVSTIMGIEPSFSE 387 (588)
Q Consensus 316 vvDaa~~~-~~-----d~~~l~l~~~~~D~vv~S~~K~~--G~~P~G~G~L~v~~~~~~~l~~~~~g~~g~v~~~~~~~~ 387 (588)
|+|.++.. +. -...++ ..||+++++ |.+ |+ | +|+++++++....+......
T Consensus 239 I~DEV~tG~gRtG~~~~~~~~g---v~PDi~~~g--K~l~gG~-p--~~av~~~~~~~~~~~~~~~~------------- 297 (431)
T d1zoda1 239 ILDEAQTGVGRTGTMFACQRDG---VTPDILTLS--KTLGAGL-P--LAAIVTSAAIEERAHELGYL------------- 297 (431)
T ss_dssp EEECTTTTTTTTSSSSTHHHHT---CCCSEEEEC--HHHHTTS-S--CEEEEECHHHHHHHHHTTCC-------------
T ss_pred EeccccccccccccccccccCC---CCcchhccc--ccccccc-c--cceeeeeecchhhhhccccc-------------
Confidence 99999775 31 111223 349988765 633 33 3 46667777665433211100
Q ss_pred ccccccccccccccCCCCCccchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCeEE-EeCC
Q 037063 388 IIELETLDESSQSKFPESSISGVSSKLVECKGLDHADALGLILISNRARYLINWLANALMNLHHPHSETGIPLVR-IYGP 466 (588)
Q Consensus 388 ~~~~~~~~~~~f~e~GT~~~~~~~~~~al~~aL~~l~~~G~~~i~~r~~~L~~~l~~~L~~L~h~~~~~g~~~v~-i~~p 466 (588)
-.+|..-..+ ..++..+.|+.+++ +.+.++...+.+++.+.+.++... .+.+. +-
T Consensus 298 -------------~~~T~~g~pl-~~aaa~a~l~~i~~---~~~~~~~~~~g~~l~~~l~~~~~~-----~~~i~~vr-- 353 (431)
T d1zoda1 298 -------------FYTTHVSDPL-PAAVGLRVLDVVQR---DGLVARANVMGDRLRRGLLDLMER-----FDCIGDVR-- 353 (431)
T ss_dssp -------------CCCTTTTCHH-HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHH-----CTTEEEEE--
T ss_pred -------------ccCCCCCCcc-hHHHHHHHHHHhhh---hhhhHHHHHHHHHHhhhhhhhhhc-----CCCeEEEe--
Confidence 0112222221 12344456666655 556666666666666665543211 12221 11
Q ss_pred CCCCCcccEEEEEeecC--CCCCc--CHHHHHHHHHhCCcEeccccccCcccccchHHHHHHHHhhhcCCCCCcCCccEE
Q 037063 467 KVMFDRGPSLAFNVFDW--NGTRI--DPALVQKLADRHNISLSCGFLQNIFFSGEYEQERVRVLETRSGTNETRSGVSVV 542 (588)
Q Consensus 467 ~~~~~rg~iv~f~~~~~--~g~~i--~~~~v~~~l~~~gI~v~~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~v 542 (588)
..|.++++.+... ..... -...+.+.+.++|+.++.- ... ....+|
T Consensus 354 ----G~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~-~~~-------------------------~~~~~i 403 (431)
T d1zoda1 354 ----GRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIV-QLP-------------------------GMGGVF 403 (431)
T ss_dssp ----EETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEE-CCT-------------------------TSCCEE
T ss_pred ----ecceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCee-eec-------------------------CCCCEE
Confidence 2456777765321 11111 1344666777788864321 000 111289
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhhh
Q 037063 543 TAALGCLTNFEDTYRLWAFVSRFLDA 568 (588)
Q Consensus 543 RvSlg~~~t~eDv~~li~~l~~~l~~ 568 (588)
|+++.+..|.+||+++++.|.+.|++
T Consensus 404 ~l~Ppl~it~~eid~~~~~l~~al~~ 429 (431)
T d1zoda1 404 RIAPPLTVSEDEIDLGLSLLGQAIER 429 (431)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998875
|