Citrus Sinensis ID: 037081

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MMQTRRGTFVEARHGGYWLGVLEKKTHESINNRLALVMKSGKYTLGYKAAIRSLRRNLIILSSNCPPLRKSEIEY
Secondary Structure (PSIPRED)
ccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHcEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccEEEEccccccEEEEEEccccHHHHHHHHHHHHHcEEEEcHHHHHHHHHHccEEEEccccccccccccc
Coil and Loop (DISEMBL)
mmqtrrgtfvearhggyWLGVLEKKTHESINNRLALVMKSGKYTLGYKAAIRSLRRNLIIlssncpplrkseiey
Flexible Loop (DISEMBL)
mmqtrrgtfvearhggywlGVLEKKTHESINNRLALVMKSGKYTLGYKAAIRSLRRNliilssncpplrkseiey
Low Complexity Region (SEG)
MMQTRRGTFVEARHGGYWLGVLEKKTHESINNRLALVMKSGKYTLGYKAAIRSLRRNLIILSSNCPPLRKSEIEY
Disordered region (IsUnstruct)
*******TFVEARHGGYWLGVLEKKTHESINNRLALVMKSGKYTLGYKAAIRSLRRNLIILSS************
Disordered Region (DISOPRED)
********************************RLALVMKSGKYTLGYKAAIRSLRRNLIILSSNCPPLRKS****
Disordered Region (DISEMBL)
********FVEARHGGYWLGVLEKKTHESINNRLALVMKSGKYTLGYKAAIRSLRRNLIILSSNCPPLRKSEIEY
Disordered Region (DISPRO)
MMQTRRGTFVEARHGGYWLGVLEKKTHESINNRLALVMKSGKYTLGYKAAIRSLRRNLIILSSNCPPLRKS****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMQTRRGTFVEARHGGYWLGVLEKKTHESINNRLALVMKSGKYTLGYKAAIRSLRRNLIILSSNCPPLRKSEIEY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
O49884	112	60S ribosomal protein L30	N/A	no	0.693	0.464	0.781	2e-17
Q9M5M6	112	60S ribosomal protein L30	N/A	no	0.693	0.464	0.763	6e-17
Q9LSA3	112	60S ribosomal protein L30	yes	no	0.693	0.464	0.727	4e-16
Q9C8F7	112	Putative 60S ribosomal pr	yes	no	0.693	0.464	0.727	4e-16
Q8VZ19	112	60S ribosomal protein L30	no	no	0.693	0.464	0.709	1e-15
Q9SDG6	111	60S ribosomal protein L30	yes	no	0.693	0.468	0.672	1e-14
O48558	112	60S ribosomal protein L30	N/A	no	0.693	0.464	0.654	2e-14
P58375	113	60S ribosomal protein L30	N/A	no	0.706	0.469	0.660	1e-13
Q5I7K9	112	60S ribosomal protein L30	N/A	no	0.68	0.455	0.685	1e-13
Q6FXZ0	105	60S ribosomal protein L30	yes	no	0.68	0.485	0.648	6e-13

>sp|O49884|RL30_LUPLU 60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 49/55 (89%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KKTHESINNRLALVMKSGKYTLGYK  ++SLR +   LII+++NCPPLRKSEIEY
Sbjct: 8  KKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEY 62

Lupinus luteus (taxid: 3873)

>sp|Q9M5M6|RL30_EUPES 60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/55 (76%), Positives = 48/55 (87%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KKTHESIN+RLALVMKSGK+TLGYK  + SLR N   LII+++NCPPLRKSEIEY
Sbjct: 8  KKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEIEY 62

Euphorbia esula (taxid: 3993)

>sp|Q9LSA3|RL303_ARATH 60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=3 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 49/55 (89%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KK+HE IN+RLALVMKSGKYTLGYK+ ++SLR +   LI++SSNCPPLR+SEIEY
Sbjct: 8  KKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEY 62

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8F7|RL301_ARATH Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 49/55 (89%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KK+HE IN+RLALVMKSGKYTLGYK+ ++SLR +   LI++SSNCPPLR+SEIEY
Sbjct: 8  KKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEY 62

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ19|RL302_ARATH 60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=3 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 49/55 (89%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KK+HE IN+RLALVMKSGKYTLGYK+ ++SLR +   LI++S+NCPPLR+SEIEY
Sbjct: 8  KKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEIEY 62

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SDG6|RL30_ORYSJ 60S ribosomal protein L30 OS=Oryza sativa subsp. japonica GN=RPL30 PE=3 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 47/55 (85%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KK+ ++INN+L LVMKSGKYTLGYK  +R+LR +   L+I+S+NCPPLRKSEIEY
Sbjct: 8  KKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEIEY 62

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O48558|RL30_MAIZE 60S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 47/55 (85%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KK+ ++INN+L LVMKSGKYTLGYK  +R+LR +   L+I+++NCPPLRKSEIEY
Sbjct: 8  KKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKSKLVIIANNCPPLRKSEIEY 62

Zea mays (taxid: 4577)

>sp|P58375|RL30_SPOFR 60S ribosomal protein L30 OS=Spodoptera frugiperda GN=RpL30 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 46/56 (82%), Gaps = 3/56 (5%)

Query: 23 EKKTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY 75
          +KKT ESIN+RLALVMKSGKY LGYK  +++LR+    L+I++ N PPLRKSEIEY
Sbjct: 7  QKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEY 62

Spodoptera frugiperda (taxid: 7108)

>sp|Q5I7K9|RL30_WHEAT 60S ribosomal protein L30 OS=Triticum aestivum PE=1 SV=2

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 46/54 (85%), Gaps = 3/54 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIE 74
          KK+ E+INN+L LVMKSGKYTLGYK  +++LR +   LIIL++NCPPLRKSEIE
Sbjct: 8  KKSGENINNKLQLVMKSGKYTLGYKTVLKTLRSSLGKLIILANNCPPLRKSEIE 61

Triticum aestivum (taxid: 4565)

>sp|Q6FXZ0|RL30_CANGA 60S ribosomal protein L30 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPL30 PE=3 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 45/54 (83%), Gaps = 3/54 (5%)

Query: 25 KTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KT ESIN +LALV+KSGK+TLGYK+ I+SLR+    LII+++N P LRKSE+EY
Sbjct: 5  KTQESINQKLALVVKSGKFTLGYKSTIKSLRQGKSKLIIIAANTPVLRKSELEY 58

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
255576194	112	60S ribosomal protein L30, putative [Ric	0.693	0.464	0.818	2e-16
224081200	112	predicted protein [Populus trichocarpa]	0.693	0.464	0.8	3e-16
224104913	112	predicted protein [Populus trichocarpa]	0.693	0.464	0.8	4e-16
217073834	112	unknown [Medicago truncatula] gi|3884965	0.693	0.464	0.781	4e-16
449445100	112	PREDICTED: 60S ribosomal protein L30-lik	0.693	0.464	0.8	6e-16
282848250	112	60S ribosomal protein L30 [Jatropha curc	0.693	0.464	0.781	6e-16
224093800	112	predicted protein [Populus trichocarpa]	0.693	0.464	0.781	6e-16
357502689	112	60S ribosomal protein L30 [Medicago trun	0.693	0.464	0.781	7e-16
6094048	112	RecName: Full=60S ribosomal protein L30	0.693	0.464	0.781	7e-16
225438619	112	PREDICTED: 60S ribosomal protein L30 [Vi	0.693	0.464	0.781	7e-16

>gi|255576194|ref|XP_002528991.1| 60S ribosomal protein L30, putative [Ricinus communis] gi|223531581|gb|EEF33410.1| 60S ribosomal protein L30, putative [Ricinus communis]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 49/55 (89%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KKTHESINNRLALVMKSGKYTLGYK  +RSLR +   LII+S+NCPPLRKSEIEY
Sbjct: 8  KKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIIISNNCPPLRKSEIEY 62

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081200|ref|XP_002306331.1| predicted protein [Populus trichocarpa] gi|118484057|gb|ABK93914.1| unknown [Populus trichocarpa] gi|118485363|gb|ABK94539.1| unknown [Populus trichocarpa] gi|222855780|gb|EEE93327.1| predicted protein [Populus trichocarpa]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/55 (80%), Positives = 49/55 (89%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KKTHESINNRLALVMKSGKYTLGYK  ++SLR +   LI+LS+NCPPLRKSEIEY
Sbjct: 8  KKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLILLSNNCPPLRKSEIEY 62

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104913|ref|XP_002313617.1| predicted protein [Populus trichocarpa] gi|224131730|ref|XP_002328094.1| predicted protein [Populus trichocarpa] gi|118483895|gb|ABK93838.1| unknown [Populus trichocarpa] gi|222837609|gb|EEE75974.1| predicted protein [Populus trichocarpa] gi|222850025|gb|EEE87572.1| predicted protein [Populus trichocarpa]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/55 (80%), Positives = 49/55 (89%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KKTHESINNRLALVMKSGKYTLGYK  ++SLR +   LII+S+NCPPLRKSEIEY
Sbjct: 8  KKTHESINNRLALVMKSGKYTLGYKTVLKSLRNSKGKLIIISNNCPPLRKSEIEY 62

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073834|gb|ACJ85277.1| unknown [Medicago truncatula] gi|388496542|gb|AFK36337.1| unknown [Medicago truncatula]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 49/55 (89%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KKTHESINNRLALV+KSGKYTLGYK  ++SLR N   LII+++NCPPLRKSEIEY
Sbjct: 8  KKTHESINNRLALVLKSGKYTLGYKTVLKSLRNNKGKLIIIANNCPPLRKSEIEY 62

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445100|ref|XP_004140311.1| PREDICTED: 60S ribosomal protein L30-like isoform 1 [Cucumis sativus] gi|449445102|ref|XP_004140312.1| PREDICTED: 60S ribosomal protein L30-like isoform 2 [Cucumis sativus] gi|449479854|ref|XP_004155728.1| PREDICTED: 60S ribosomal protein L30-like isoform 1 [Cucumis sativus] gi|449479857|ref|XP_004155729.1| PREDICTED: 60S ribosomal protein L30-like isoform 2 [Cucumis sativus]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/55 (80%), Positives = 49/55 (89%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KKTHESINNRLALVMKSGKYTLGYK  +R++R +   LIILS+NCPPLRKSEIEY
Sbjct: 8  KKTHESINNRLALVMKSGKYTLGYKTVLRTIRGSKGKLIILSNNCPPLRKSEIEY 62

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|282848250|gb|ADB02906.1| 60S ribosomal protein L30 [Jatropha curcas]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 49/55 (89%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KKTHESINNRLALVMKSG+YTLGYK  +RSLR +   LI++S+NCPPLRKSEIEY
Sbjct: 8  KKTHESINNRLALVMKSGRYTLGYKTVLRSLRSSKGKLIVISNNCPPLRKSEIEY 62

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093800|ref|XP_002309997.1| predicted protein [Populus trichocarpa] gi|118481493|gb|ABK92689.1| unknown [Populus trichocarpa] gi|118483057|gb|ABK93438.1| unknown [Populus trichocarpa] gi|222852900|gb|EEE90447.1| predicted protein [Populus trichocarpa]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 49/55 (89%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KKTHESINNRLALVMKSGKYTLGYK  +++LR +   LI+LS+NCPPLRKSEIEY
Sbjct: 8  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLILLSNNCPPLRKSEIEY 62

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502689|ref|XP_003621633.1| 60S ribosomal protein L30 [Medicago truncatula] gi|355496648|gb|AES77851.1| 60S ribosomal protein L30 [Medicago truncatula] gi|388504426|gb|AFK40279.1| unknown [Medicago truncatula]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 49/55 (89%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KKTHESINNRLALVMKSGKYTLGYK  ++SLR +   LII+++NCPPLRKSEIEY
Sbjct: 8  KKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEY 62

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6094048|sp|O49884.1|RL30_LUPLU RecName: Full=60S ribosomal protein L30 gi|2879811|emb|CAA11256.1| ribosomal protein L30 [Lupinus luteus]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 49/55 (89%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KKTHESINNRLALVMKSGKYTLGYK  ++SLR +   LII+++NCPPLRKSEIEY
Sbjct: 8  KKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEY 62

Source: Lupinus luteus

Species: Lupinus luteus

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438619|ref|XP_002281037.1| PREDICTED: 60S ribosomal protein L30 [Vitis vinifera] gi|296082469|emb|CBI21474.3| unnamed protein product [Vitis vinifera]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 49/55 (89%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KKTHESINNRLALVMKSGKYTLGYK  ++SLR +   LI++S+NCPPLRKSEIEY
Sbjct: 8  KKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLILISNNCPPLRKSEIEY 62

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
TAIR|locus:2013205	112	AT1G36240 [Arabidopsis thalian	0.693	0.464	0.727	1.4e-16
TAIR|locus:2093984	112	RLK902 "receptor-like kinase 9	0.693	0.464	0.727	1.4e-16
TAIR|locus:2029401	112	AT1G77940 [Arabidopsis thalian	0.693	0.464	0.709	3.7e-16
UNIPROTKB|G1K316	108	RPL30 "60S ribosomal protein L	0.693	0.481	0.636	4.4e-13
UNIPROTKB|P67883	115	RPL30 "60S ribosomal protein L	0.693	0.452	0.636	4.4e-13
UNIPROTKB|Q3T0D5	115	RPL30 "60S ribosomal protein L	0.693	0.452	0.636	4.4e-13
UNIPROTKB|E5RI99	114	RPL30 "60S ribosomal protein L	0.693	0.456	0.636	4.4e-13
UNIPROTKB|P62888	115	RPL30 "60S ribosomal protein L	0.693	0.452	0.636	4.4e-13
UNIPROTKB|F2Z554	115	RPL30 "Uncharacterized protein	0.693	0.452	0.636	4.4e-13
MGI|MGI:98037	115	Rpl30 "ribosomal protein L30"	0.693	0.452	0.636	4.4e-13

TAIR|locus:2013205 AT1G36240 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 40/55 (72%), Positives = 49/55 (89%)

Query:    24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
             KK+HE IN+RLALVMKSGKYTLGYK+ ++SLR +   LI++SSNCPPLR+SEIEY
Sbjct:     8 KKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEY 62

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2093984 RLK902 "receptor-like kinase 902" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 40/55 (72%), Positives = 49/55 (89%)

Query:    24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
             KK+HE IN+RLALVMKSGKYTLGYK+ ++SLR +   LI++SSNCPPLR+SEIEY
Sbjct:     8 KKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEY 62

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2029401 AT1G77940 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 39/55 (70%), Positives = 49/55 (89%)

Query:    24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
             KK+HE IN+RLALVMKSGKYTLGYK+ ++SLR +   LI++S+NCPPLR+SEIEY
Sbjct:     8 KKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEIEY 62

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

UNIPROTKB|G1K316 RPL30 "60S ribosomal protein L30" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query:    24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
             KK+ ESIN+RL LVMKSGKY LGYK  ++ +R+    L+IL++NCP LRKSEIEY
Sbjct:     1 KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEY 55

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|P67883 RPL30 "60S ribosomal protein L30" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query:    24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
             KK+ ESIN+RL LVMKSGKY LGYK  ++ +R+    L+IL++NCP LRKSEIEY
Sbjct:     8 KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEY 62

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|Q3T0D5 RPL30 "60S ribosomal protein L30" [Bos taurus (taxid:9913)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query:    24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
             KK+ ESIN+RL LVMKSGKY LGYK  ++ +R+    L+IL++NCP LRKSEIEY
Sbjct:     8 KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEY 62

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E5RI99 RPL30 "60S ribosomal protein L30" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query:    24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
             KK+ ESIN+RL LVMKSGKY LGYK  ++ +R+    L+IL++NCP LRKSEIEY
Sbjct:     8 KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEY 62

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|P62888 RPL30 "60S ribosomal protein L30" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query:    24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
             KK+ ESIN+RL LVMKSGKY LGYK  ++ +R+    L+IL++NCP LRKSEIEY
Sbjct:     8 KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEY 62

GO:0003735 "structural constituent of ribosome" evidence=NAS;TAS

GO:0003723 "RNA binding" evidence=TAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA;TAS

GO:0006412 "translation" evidence=NAS;TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F2Z554 RPL30 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query:    24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
             KK+ ESIN+RL LVMKSGKY LGYK  ++ +R+    L+IL++NCP LRKSEIEY
Sbjct:     8 KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEY 62

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:98037 Rpl30 "ribosomal protein L30" [Mus musculus (taxid:10090)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query:    24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
             KK+ ESIN+RL LVMKSGKY LGYK  ++ +R+    L+IL++NCP LRKSEIEY
Sbjct:     8 KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEY 62

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C8F7	RL301_ARATH	No assigned EC number	0.7272	0.6933	0.4642	yes	no
Q9LSA3	RL303_ARATH	No assigned EC number	0.7272	0.6933	0.4642	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015281001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (112 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023139001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (136 aa)	•			•		•	•		0.941
	GSVIVG00018552001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)				•	•	•	•		0.854
	GSVIVG00026857001	RecName- Full=60S ribosomal protein L36; (110 aa)				•	•	•			0.850
	GSVIVG00029522001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (129 aa)				•	•	•			0.821
	GSVIVG00019318001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_20, whole genome shotg [...] (245 aa)			•	•	•		•		0.807
	GSVIVG00031140001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (234 aa)				•	•	•	•		0.790
	GSVIVG00005647001	SubName- Full=Chromosome undetermined scaffold_155, whole genome shotgun sequence; (159 aa)			•	•	•	•	•		0.786
	GSVIVG00019030001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (103 aa)				•	•	•	•		0.780
	GSVIVG00025458001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (208 aa)	•			•	•	•			0.767
	Rps5	SubName- Full=Chromosome chr4 scaffold_39, whole genome shotgun sequence; (204 aa)	•			•	•	•			0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	75
PTZ00106	108	PTZ00106, PTZ00106, 60S ribosomal protein L30; Pro	3e-25
COG1911	100	COG1911, RPL30, Ribosomal protein L30E [Translatio	6e-15
pfam01248	95	pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/	7e-09
PRK01018	99	PRK01018, PRK01018, 50S ribosomal protein L30e; Re	5e-05

>gnl|CDD|185450 PTZ00106, PTZ00106, 60S ribosomal protein L30; Provisional

 Score = 89.8 bits (223), Expect = 3e-25
 Identities = 34/55 (61%), Positives = 45/55 (81%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY 75
          KK  ESIN++L LVMKSGKYTLG K+ +++LR     L+I+S+NCPP+R+SEIEY
Sbjct: 7  KKAQESINSKLQLVMKSGKYTLGTKSTLKALRNGKAKLVIISNNCPPIRRSEIEY 61

Length = 108

>gnl|CDD|224823 COG1911, RPL30, Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]

 Score = 63.1 bits (154), Expect = 6e-15
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY 75
              + +   L L +K+GK  LG K  I+SL+     LII++SNCP   K +IEY
Sbjct: 1  SSMGDDVEKELKLAVKTGKVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDIEY 55

Length = 100

>gnl|CDD|216387 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

 Score = 47.6 bits (114), Expect = 7e-09
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 28 ESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSE-IEY 75
          +++   L   +K+GK  LG K   ++LRR    L+I++ +C P  K + +  
Sbjct: 1  DALKEVLKKALKTGKLVLGLKEVTKALRRGKAKLVIIAEDCDPEEKVKLLPA 52

This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118. Length = 95

>gnl|CDD|179205 PRK01018, PRK01018, 50S ribosomal protein L30e; Reviewed

 Score = 37.3 bits (87), Expect = 5e-05
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 29 SINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
            N  L + + +GK  LG K  I++++     L+I++SNCP   K +IEY
Sbjct: 3  DFNRELRVAVDTGKVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEY 52

Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	75
COG1911	100	RPL30 Ribosomal protein L30E [Translation, ribosom	99.85
KOG2988	112	consensus 60S ribosomal protein L30 [Translation,	99.8
PTZ00106	108	60S ribosomal protein L30; Provisional	99.61
PRK01018	99	50S ribosomal protein L30e; Reviewed	99.41
PRK06683	82	hypothetical protein; Provisional	99.04
PRK07714	100	hypothetical protein; Provisional	98.97
PRK05583	104	ribosomal protein L7Ae family protein; Provisional	98.93
PRK13602	82	putative ribosomal protein L7Ae-like; Provisional	98.87
PRK07283	98	hypothetical protein; Provisional	98.83
TIGR03677	117	rpl7ae 50S ribosomal protein L7Ae. Multifunctional	98.7
PF01248	95	Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/G	98.7
PRK13601	82	putative L7Ae-like ribosomal protein; Provisional	98.67
PRK04175	122	rpl7ae 50S ribosomal protein L7Ae; Validated	98.61
COG1358	116	RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Tr	97.47
PRK09190	220	hypothetical protein; Provisional	97.16
PRK13600	84	putative ribosomal protein L7Ae-like; Provisional	96.0
KOG3406	134	consensus 40S ribosomal protein S12 [Translation,	91.02
PTZ00222	263	60S ribosomal protein L7a; Provisional	86.6

>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=5.2e-22  Score=133.35  Aligned_cols=50  Identities=44%  Similarity=0.743  Sum_probs=48.7

Q ss_pred             hHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081           26 THESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY   75 (75)
Q Consensus        26 ~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY   75 (75)
                      ..+||+++|+++||||||+||+|+|||++++   ||||||+|||+++|+||||
T Consensus         3 ~~~~v~~~L~~avkTGkvilG~k~tiK~lk~gkaKliiiAsN~P~~~k~~iey   55 (100)
T COG1911           3 MGDDVEKELKLAVKTGKVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDIEY   55 (100)
T ss_pred             ccchHHHHHHHHHhcCCEEEehHHHHHHHHcCCCcEEEEecCCCHHHHHHHHH
Confidence            5689999999999999999999999999999   9999999999999999998

>KOG2988 consensus 60S ribosomal protein L30 [Translation, ribosomal structure and biogenesis]

Probab=99.80  E-value=2.6e-20  Score=127.20  Aligned_cols=57  Identities=67%  Similarity=0.990  Sum_probs=54.8

Q ss_pred             hhhhhhhhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081           19 LGVLEKKTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY   75 (75)
Q Consensus        19 ~~k~~k~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY   75 (75)
                      +.+|.++..++||++|.++||||||++|||+|+|++|+   ||+|+|+|||+.+|+||||
T Consensus         3 ~~~k~~k~~e~ins~lll~mksgkY~lgyK~T~k~~r~gkakL~~is~n~p~lrks~iey   62 (112)
T KOG2988|consen    3 FFKKSKKSGEFINSSLLLVMKSGKYILGYKQTLKSLRQGKAKLIIISSNCPPLRKSEIEY   62 (112)
T ss_pred             ccccccccchhhhHHHHHHHhhcceeechHHHHHHHHhccceEEEeecCCCCcchhHHHH
Confidence            56788889999999999999999999999999999999   9999999999999999998

>PTZ00106 60S ribosomal protein L30; Provisional

Probab=99.61  E-value=8.7e-16  Score=102.22  Aligned_cols=57  Identities=60%  Similarity=1.019  Sum_probs=53.0

Q ss_pred             hhhhhhhhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081           19 LGVLEKKTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY   75 (75)
Q Consensus        19 ~~k~~k~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY   75 (75)
                      +.+++|+..+||++.|.+|+++||+++|+++|+++|+.   +|||||+|||+..++++++
T Consensus         2 ~~~~~~~~~~~i~~~Lgla~raGKlv~G~~~vlkalk~gkaklViiA~D~~~~~kkki~~   61 (108)
T PTZ00106          2 MKKKKKKAQESINSKLQLVMKSGKYTLGTKSTLKALRNGKAKLVIISNNCPPIRRSEIEY   61 (108)
T ss_pred             CcccccccHhhHHHHHHHHHHhCCeeecHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHH
Confidence            45677888899999999999999999999999999997   9999999999999999874

>PRK01018 50S ribosomal protein L30e; Reviewed

Probab=99.41  E-value=2.4e-13  Score=88.49  Aligned_cols=49  Identities=37%  Similarity=0.661  Sum_probs=46.2

Q ss_pred             HHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081           27 HESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY   75 (75)
Q Consensus        27 ~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY   75 (75)
                      ++|++++|+++.|+||++.|+++++|+|+.   ||||||+|||+..++++++
T Consensus         1 ~~~~~~~l~~a~ragkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~   52 (99)
T PRK01018          1 MMDFNRELRVAVDTGKVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEY   52 (99)
T ss_pred             CCCHHHHHHHHHHcCCEEEcHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHH
Confidence            378999999999999999999999999998   9999999999999998864

>PRK06683 hypothetical protein; Provisional

Probab=99.04  E-value=2.4e-10  Score=72.89  Aligned_cols=41  Identities=10%  Similarity=0.187  Sum_probs=38.6

Q ss_pred             HHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhc
Q 037081           34 LALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIE   74 (75)
Q Consensus        34 L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIE   74 (75)
                      |+.++++||+++|.++|+|+|+.   ||||||+|||+..+.+|+
T Consensus         3 ~~~~~~agk~v~G~~~v~kaik~gkaklViiA~Da~~~~~~~i~   46 (82)
T PRK06683          3 YQKVSNAENVVVGHKRTLEAIKNGIVKEVVIAEDADMRLTHVII   46 (82)
T ss_pred             hHHHHhCCCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHH
Confidence            67888999999999999999998   999999999999999875

>PRK07714 hypothetical protein; Provisional

Probab=98.97  E-value=1.2e-09  Score=70.76  Aligned_cols=47  Identities=19%  Similarity=0.303  Sum_probs=44.0

Q ss_pred             HhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhc
Q 037081           28 ESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIE   74 (75)
Q Consensus        28 ~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIE   74 (75)
                      ..+-+-|.++.|+|+++.|+++++++|+.   +|||+|+|||+..+++++
T Consensus         4 ~~~~~~Lgla~raGk~v~G~~~v~~al~~g~~~lViiA~D~s~~~~~ki~   53 (100)
T PRK07714          4 SDWKSFLGLANRARKVISGEELVLKEVRSGKAKLVLLSEDASVNTTKKIT   53 (100)
T ss_pred             HHHHHHHHHHHHhCCeeecHHHHHHHHHhCCceEEEEeCCCCHHHHHHHH
Confidence            45788999999999999999999999998   999999999999999885

>PRK05583 ribosomal protein L7Ae family protein; Provisional

Probab=98.93  E-value=1.8e-09  Score=71.32  Aligned_cols=47  Identities=28%  Similarity=0.432  Sum_probs=43.7

Q ss_pred             HhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhc
Q 037081           28 ESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIE   74 (75)
Q Consensus        28 ~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIE   74 (75)
                      +.+-+-|.++.|+||++.|+++++++|+.   +|||+|+|||++.|++|+
T Consensus         3 ~k~l~lLglA~rAGklv~G~~~v~~aik~gk~~lVI~A~D~s~~~kkki~   52 (104)
T PRK05583          3 NKFLNFLGLTKKAGKLLEGYNKCEEAIKKKKVYLIIISNDISENSKNKFK   52 (104)
T ss_pred             HHHHHHHHHHHHhCCeeecHHHHHHHHHcCCceEEEEeCCCCHhHHHHHH
Confidence            44677899999999999999999999998   999999999999999985

>PRK13602 putative ribosomal protein L7Ae-like; Provisional

Probab=98.87  E-value=2.4e-09  Score=67.93  Aligned_cols=39  Identities=18%  Similarity=0.436  Sum_probs=35.6

Q ss_pred             HHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhc
Q 037081           36 LVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIE   74 (75)
Q Consensus        36 la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIE   74 (75)
                      .+-++||++.|.++|+|+|+.   +|||||+|||+..+.+|+
T Consensus         5 ~~~ragkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~   46 (82)
T PRK13602          5 KVSQAKSIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVE   46 (82)
T ss_pred             HHHhcCCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHH
Confidence            445899999999999999998   999999999999998875

>PRK07283 hypothetical protein; Provisional

Probab=98.83  E-value=8.1e-09  Score=66.99  Aligned_cols=46  Identities=20%  Similarity=0.461  Sum_probs=42.5

Q ss_pred             HhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhh
Q 037081           28 ESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEI   73 (75)
Q Consensus        28 ~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eI   73 (75)
                      +.+-+-|.++.|+||++.|+++++++|+.   ++||+|+||+++.++.+
T Consensus         4 ~~~l~~LglA~raGklv~G~~~v~~aik~gk~~lVi~A~Das~~~~kk~   52 (98)
T PRK07283          4 QKISNLLGLAQRAGRIISGEELVVKAIQSGQAKLVFLANDAGPNLTKKV   52 (98)
T ss_pred             HHHHHHHHHHHHhCCeeEcHHHHHHHHHcCCccEEEEeCCCCHHHHHHH
Confidence            45778899999999999999999999998   99999999999999765

>TIGR03677 rpl7ae 50S ribosomal protein L7Ae

Probab=98.70  E-value=2.3e-08  Score=66.89  Aligned_cols=47  Identities=13%  Similarity=0.302  Sum_probs=41.7

Q ss_pred             HhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCCh-hhhhhhc
Q 037081           28 ESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPP-LRKSEIE   74 (75)
Q Consensus        28 ~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~-~~K~eIE   74 (75)
                      .-+-+-|.++.++|+++.|+++++++|+.   +|||||+||+| +.+++++
T Consensus        12 ~ki~~lL~la~ragkl~~G~~~v~kaikkgka~LVilA~D~s~~~~~~~i~   62 (117)
T TIGR03677        12 NKALEAVEKARETGKIKKGTNEVTKAVERGIAKLVVIAEDVEPPEIVAHLP   62 (117)
T ss_pred             HHHHHHHHHHHHcCCEeEcHHHHHHHHHcCCccEEEEeCCCCcHHHHHHHH
Confidence            45778899999999999999999999998   99999999966 5777764

Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.

>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.70  E-value=4.2e-08  Score=61.30  Aligned_cols=45  Identities=29%  Similarity=0.598  Sum_probs=41.9

Q ss_pred             HhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhh
Q 037081           28 ESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSE   72 (75)
Q Consensus        28 ~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~e   72 (75)
                      +.+.+.|..+.++|++++|.++++++|+.   ++||+|+||+|....+
T Consensus         1 ~~i~~~l~~a~~~~~lv~G~~~v~k~l~~~~~~lvilA~d~~~~~~~~   48 (95)
T PF01248_consen    1 DKIYKLLKLARKAGRLVKGIKEVLKALKKGKAKLVILAEDCSPDSIKK   48 (95)
T ss_dssp             HHHHHHHHHHHHHSEEEESHHHHHHHHHTTCESEEEEETTSSSGHHHH
T ss_pred             ChHHHHHHHHHhcCCEEEchHHHHHHHHcCCCcEEEEcCCCChhhhcc
Confidence            35788999999999999999999999999   9999999999988876

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....

>PRK13601 putative L7Ae-like ribosomal protein; Provisional

Probab=98.67  E-value=1.8e-08  Score=64.63  Aligned_cols=35  Identities=11%  Similarity=0.265  Sum_probs=32.8

Q ss_pred             hcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhc
Q 037081           40 SGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIE   74 (75)
Q Consensus        40 TGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIE   74 (75)
                      -||+++|.++|+|+|+.   ||||||+|||+..+.+|+
T Consensus         6 ~GKlv~G~~~vlkaIk~gkakLViiA~Da~~~~~k~i~   43 (82)
T PRK13601          6 PSKRVVGAKQTLKAITNCNVLQVYIAKDAEEHVTKKIK   43 (82)
T ss_pred             CccEEEchHHHHHHHHcCCeeEEEEeCCCCHHHHHHHH
Confidence            49999999999999997   999999999999998875

>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated

Probab=98.61  E-value=1e-07  Score=64.35  Aligned_cols=46  Identities=15%  Similarity=0.329  Sum_probs=40.7

Q ss_pred             HhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCCh-hhhhhh
Q 037081           28 ESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPP-LRKSEI   73 (75)
Q Consensus        28 ~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~-~~K~eI   73 (75)
                      +-+-+-|.+++++|+++.|.++++++|+.   +|||||+||+| +.++++
T Consensus        16 ~ki~~lL~la~ragklv~G~~~v~kaikkgkakLVilA~D~s~~~i~~~~   65 (122)
T PRK04175         16 EKALEAVEKARDTGKIKKGTNETTKAVERGIAKLVVIAEDVDPEEIVAHL   65 (122)
T ss_pred             HHHHHHHHHHHHcCCEeEcHHHHHHHHHcCCccEEEEeCCCChHHHHHHH
Confidence            44888899999999999999999999998   99999999966 566655

>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.00027  Score=48.07  Aligned_cols=46  Identities=13%  Similarity=0.261  Sum_probs=39.7

Q ss_pred             hHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCC-hhhhh
Q 037081           26 THESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCP-PLRKS   71 (75)
Q Consensus        26 ~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP-~~~K~   71 (75)
                      ..+.+.+.+..+.++|++.-|.|++.|+|+.   +|||||.++- ++...
T Consensus        11 ~~~k~l~~l~~a~~~~ki~~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~   60 (116)
T COG1358          11 LEQKALSLLGKASRAGKLKKGTNEVTKAIERGKAKLVVIAEDVSPEELVK   60 (116)
T ss_pred             HHHHHHHHHHHHHhcCCchhhHHHHHHHHHcCCCcEEEEecCCCHHHHHH
Confidence            3466778889999999999999999999999   9999999998 44443

>PRK09190 hypothetical protein; Provisional

Probab=97.16  E-value=0.00086  Score=49.68  Aligned_cols=45  Identities=22%  Similarity=0.327  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhc
Q 037081           30 INNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIE   74 (75)
Q Consensus        30 i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIE   74 (75)
                      +-+-|-++.|.|+++.|+.+++++|+.   +|||+|+++.+.-++++.
T Consensus        99 il~lLGLArRAGklVsG~~~V~~alk~gk~~Lvi~A~DaS~~t~kKl~  146 (220)
T PRK09190         99 ALDALGLARKAGQVVSGFEKVDAALRSGEAAALIHASDGAADGKRKLD  146 (220)
T ss_pred             HHHHHHHHhhhCCEeecHHHHHHHHHcCCceEEEEeccCChhHHHHHH
Confidence            455567888999999999999999998   999999999999888763

>PRK13600 putative ribosomal protein L7Ae-like; Provisional

Probab=96.00  E-value=0.0092  Score=38.66  Aligned_cols=31  Identities=13%  Similarity=0.473  Sum_probs=26.7

Q ss_pred             eEeehHHHHHHHhh---ceeeeeCCCChhhhhhh
Q 037081           43 YTLGYKAAIRSLRR---NLIILSSNCPPLRKSEI   73 (75)
Q Consensus        43 ~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eI   73 (75)
                      +++|.|||+|+|+.   ++||||.++-|.+-+.|
T Consensus        14 ~vvG~kqt~Kai~kg~~~~v~iA~Da~~~vv~~l   47 (84)
T PRK13600         14 FVVGLKETLKALKKDQVTSLIIAEDVEVYLMTRV   47 (84)
T ss_pred             ceeeHHHHHHHHhcCCceEEEEeCCCCHHHHHHH
Confidence            49999999999997   99999999988765443

>KOG3406 consensus 40S ribosomal protein S12 [Translation, ribosomal structure and biogenesis]

Probab=91.02  E-value=0.29  Score=34.75  Aligned_cols=41  Identities=27%  Similarity=0.468  Sum_probs=35.5

Q ss_pred             HHhHHHHHHHHHHh----cceEeehHHHHHHHhh---ceeeeeCCCCh
Q 037081           27 HESINNRLALVMKS----GKYTLGYKAAIRSLRR---NLIILSSNCPP   67 (75)
Q Consensus        27 ~~~i~~~L~la~KT----GK~~LG~KqTlK~l~~---KLVIiA~NcP~   67 (75)
                      .+|++..|+.++|+    +.+.-|-+++-|+|-.   -|+++|.||-+
T Consensus        15 ~mdv~~AL~~Vlk~al~~dGlarGi~Ea~KaldkrqA~lcvLaencde   62 (134)
T KOG3406|consen   15 VMDVNTALQEVLKTALVHDGLARGIHEAAKALDKRQAHLCVLAENCDE   62 (134)
T ss_pred             cccHHHHHHHHHHHHHHhchHHhHHHHHHHHHhhCceeEEEEeccCCc
Confidence            48999999999986    5677889999999987   99999999854

>PTZ00222 60S ribosomal protein L7a; Provisional

Probab=86.60  E-value=0.7  Score=35.81  Aligned_cols=28  Identities=14%  Similarity=0.498  Sum_probs=24.9

Q ss_pred             eEeehHHHHHHHhh---ceeeeeCCCChhhh
Q 037081           43 YTLGYKAAIRSLRR---NLIILSSNCPPLRK   70 (75)
Q Consensus        43 ~~LG~KqTlK~l~~---KLVIiA~NcP~~~K   70 (75)
                      ++.|.+.+.++|+.   +|||||++|-|.-.
T Consensus       133 LvsG~n~VtkaIekkKAkLVIIA~DVsPie~  163 (263)
T PTZ00222        133 VVTGLQEVTRAIEKKQARMVVIANNVDPVEL  163 (263)
T ss_pred             eccCHHHHHHHHHcCCceEEEEeCCCCHHHH
Confidence            78999999999999   99999999966543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	75
1ysh_C	104	Localization And Dynamic Behavior Of Ribosomal Prot		1e-15
3izr_f	112	Localization Of The Large Subunit Ribosomal Protein		1e-14
1t0k_B	105	Joint X-ray And Nmr Refinement Of Yeast L30e-mrna C		9e-14
1ck2_A	104	Yeast (Saccharomyces Cerevisiae) Ribosomal Protein		1e-13
2zkr_6	115	Structure Of A Mammalian Ribosomal 60s Subunit With		2e-13
3vi6_A	125	Crystal Structure Of Human L30e Length = 125		2e-13
3jyw_2	98	Structure Of The 60s Proteins For Eukaryotic Riboso		6e-13
4a18_G	104	T.Thermophila 60s Ribosomal Subunit In Complex With		6e-12
3zf7_g	105	High-resolution Cryo-electron Microscopy Structure		2e-11
2bo1_A	101	Crystal Structure Of A Hybrid Ribosomal Protein L30		1e-04

>pdb|1YSH|C Chain C, Localization And Dynamic Behavior Of Ribosomal Protein L30e Length = 104

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 47/55 (85%), Gaps = 3/55 (5%)
Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KK+ E+INN+L LVMKSGKYTLGYK  +++LR +   LIIL++NCPPLRKSEIEY
Sbjct: 3  KKSGENINNKLQLVMKSGKYTLGYKTVLKTLRSSKGKLIILANNCPPLRKSEIEY 57

>pdb|3IZR|FF Chain f, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 112

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 46/54 (85%), Gaps = 3/54 (5%)
Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIE 74
          KK+ E+INN+L LVMKSGKYTLGYK  +++LR +   LIIL++NCPPLRKSEIE
Sbjct: 8  KKSGENINNKLQLVMKSGKYTLGYKTVLKTLRSSLGKLIILANNCPPLRKSEIE 61

>pdb|1T0K|B Chain B, Joint X-ray And Nmr Refinement Of Yeast L30e-mrna Complex Length = 105

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 45/54 (83%), Gaps = 3/54 (5%)
Query: 25 KTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          K+ ESIN +LALV+KSGKYTLGYK+ ++SLR+    LII+++N P LRKSE+EY
Sbjct: 5  KSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEY 58

>pdb|1CK2|A Chain A, Yeast (Saccharomyces Cerevisiae) Ribosomal Protein L30 Length = 104

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 45/54 (83%), Gaps = 3/54 (5%)
Query: 25 KTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          K+ ESIN +LALV+KSGKYTLGYK+ ++SLR+    LII+++N P LRKSE+EY
Sbjct: 4  KSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEY 57

>pdb|2ZKR|6 Chain 6, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 115

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%), Gaps = 3/55 (5%)
Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY 75
          KK+ ESIN+RL LVMKSGKY LGYK  ++ +R+    L+IL++NCP LRKSEIEY
Sbjct: 8  KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEY 62

>pdb|3VI6|A Chain A, Crystal Structure Of Human L30e Length = 125

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%), Gaps = 3/55 (5%)
Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KK+ ESIN+RL LVMKSGKY LGYK  ++ +R+    L+IL++NCP LRKSEIEY
Sbjct: 9  KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEY 63

>pdb|3JYW|2 Chain 2, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 98

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 43/51 (84%), Gaps = 3/51 (5%)
Query: 28 ESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          ESIN +LALV+KSGKYTLGYK+ ++SLR+    LII+++N P LRKSE+EY
Sbjct: 1  ESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEY 51

>pdb|4A18|G Chain G, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 104

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 46/58 (79%), Gaps = 3/58 (5%)
Query: 21 VLEKKTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY 75
          +++K T ++I ++LALVM+SGK TLGYK+ I+++R     L+ +S+NCP +RKSEIEY
Sbjct: 1  MVKKVTQDNIQSKLALVMRSGKATLGYKSTIKAIRNGTAKLVFISNNCPTVRKSEIEY 58

>pdb|3ZF7|GG Chain g, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 105

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 42/51 (82%), Gaps = 3/51 (5%)
Query: 28 ESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY 75
          ++IN ++ LVMKSGKY LG + ++++LR+    L+++S+NCPP+RK+EIEY
Sbjct: 10 DTINTKIQLVMKSGKYVLGTQQSLKTLRQGRSKLVVISANCPPIRKAEIEY 60

>pdb|2BO1|A Chain A, Crystal Structure Of A Hybrid Ribosomal Protein L30e With Surface Residues From T. Celer, And Core Residues From Yeast Length = 101

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 37 VMKSGKYTLGYKAAIRSLR---RNLIILSSNCPPLRKSEIEY 75
          V+ SGKYTLGY+  ++SL+     LII++ N  P RK ++EY
Sbjct: 11 VIDSGKYTLGYRKTVQSLKMGGSKLIIIARNTRPDRKEDLEY 52
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	75
3cpq_A	110	50S ribosomal protein L30E; RNA-protein, elongatio	3e-17
3iz5_F	190	60S ribosomal protein L9 (L6P); eukaryotic ribosom	3e-17
3u5e_c	105	L32, RP73, YL38, 60S ribosomal protein L30; transl	3e-17
4a18_G	104	RPL30; ribosome, eukaryotic initiation factor 6, E	6e-17
3vi6_A	125	60S ribosomal protein L30; three-layer alpha/beta/	7e-17
1w41_A	101	50S ribosomal protein L30E; electrostatic interact	6e-15
3v7q_A	101	Probable ribosomal protein YLXQ; L7AE superfamily,	2e-10
3on1_A	101	BH2414 protein; structural genomics, PSI-2, protei	3e-10

>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii} Length = 110

 Score = 68.7 bits (168), Expect = 3e-17
 Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 22 LEKKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          + ++ +  +N  +   + +GK  LG K  I+ ++     L++L+ N P   + +++Y
Sbjct: 1  MRRRENMDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKY 57

>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2 Length = 105

 Score = 68.3 bits (167), Expect = 3e-17
 Identities = 34/55 (61%), Positives = 45/55 (81%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
           K+ ESIN +LALV+KSGKYTLGYK+ ++SLR+    LII+++N P LRKSE+EY
Sbjct: 4  VKSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEY 58

>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6 Length = 104

 Score = 67.5 bits (165), Expect = 6e-17
 Identities = 30/58 (51%), Positives = 46/58 (79%), Gaps = 3/58 (5%)

Query: 21 VLEKKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          +++K T ++I ++LALVM+SGK TLGYK+ I+++R     L+ +S+NCP +RKSEIEY
Sbjct: 1  MVKKVTQDNIQSKLALVMRSGKATLGYKSTIKAIRNGTAKLVFISNNCPTVRKSEIEY 58

>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C Length = 125

 Score = 67.9 bits (166), Expect = 7e-17
 Identities = 35/55 (63%), Positives = 44/55 (80%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          KK+ ESIN+RL LVMKSGKY LGYK  ++ +R+    L+IL++NCP LRKSEIEY
Sbjct: 9  KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEY 63

>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A Length = 101

 Score = 62.5 bits (152), Expect = 6e-15
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 28 ESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
                L     +GK  +G + +I+  +     LII++ N  P  K +IEY
Sbjct: 2  VDFAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEY 52

>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis} Length = 101

 Score = 50.8 bits (122), Expect = 2e-10
 Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 25 KTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
           +       L L  ++ K   G    I+ +R     L++L+ +       ++  
Sbjct: 2  GSGMEWFPLLGLANRARKVVSGEDLVIKEIRNARAKLVLLTEDASSNTAKKVTD 55

>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans} Length = 101

 Score = 50.4 bits (121), Expect = 3e-10
 Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 28 ESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
              + L L  ++ +   G +  +++++     L+ILSS+     K ++  
Sbjct: 4  AKWLSLLGLAARARQLLTGEEQVVKAVQNGQVTLVILSSDAGIHTKKKLLD 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
3iz5_f	112	60S ribosomal protein L30 (L30E); eukaryotic ribos	99.64
3vi6_A	125	60S ribosomal protein L30; three-layer alpha/beta/	99.52
3j21_Z	99	50S ribosomal protein L30E; archaea, archaeal, KIN	99.45
3u5e_c	105	L32, RP73, YL38, 60S ribosomal protein L30; transl	99.45
4a18_G	104	RPL30; ribosome, eukaryotic initiation factor 6, E	99.43
3cpq_A	110	50S ribosomal protein L30E; RNA-protein, elongatio	99.31
1w41_A	101	50S ribosomal protein L30E; electrostatic interact	99.3
3v7q_A	101	Probable ribosomal protein YLXQ; L7AE superfamily,	99.2
3on1_A	101	BH2414 protein; structural genomics, PSI-2, protei	99.2
3v7e_A	82	Ribosome-associated protein L7AE-like; RNA-protein	99.12
2xzm_U	126	Ribosomal protein L7AE containing protein; ribosom	99.08
2jnb_A	144	NHP2-like protein 1; splicing, KINK-turn RNA-bindi	98.99
2ale_A	134	SNU13, NHP2/L7AE family protein YEL026W; splicing,	98.98
2lbw_A	121	H/ACA ribonucleoprotein complex subunit 2; L7AE, s	98.94
2fc3_A	124	50S ribosomal protein L7AE; alpha-beta-alpha sandw	98.85
2aif_A	135	Ribosomal protein L7A; high-mobility like protein,	98.84
1vq8_F	120	50S ribosomal protein L7AE; ribosome 50S, protein-	98.83
1rlg_A	119	50S ribosomal protein L7AE; protein-RNA, structura	98.81
3o85_A	122	Ribosomal protein L7AE; alpha beta sandwich fold,	98.77
3u5c_M	143	40S ribosomal protein S12, 40S ribosomal protein S	98.46
1xbi_A	120	50S ribosomal protein L7AE; alpha-beta-alpha sandw	98.32
2zkr_f	266	60S ribosomal protein L7A; protein-RNA complex, 60	97.18
2kg4_A	165	Growth arrest and DNA-damage-inducible protein GA	96.63
3jyw_G	113	60S ribosomal protein L8(A); eukaryotic ribosome,	96.22
3izc_H	256	60S ribosomal protein RPL8 (L7AE); eukaryotic ribo	95.73
4a17_F	255	RPL7A, 60S ribosomal protein L9; eukaryotic riboso	91.78
2bjq_A	345	MFP2A; motility, nematode, MSP; 1.75A {Ascaris suu	89.29
3ir9_A	166	Peptide chain release factor subunit 1; structural	81.22

>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C

Probab=99.52  E-value=3.9e-15  Score=99.44  Aligned_cols=56  Identities=63%  Similarity=1.009  Sum_probs=49.3

Q ss_pred             hhhhhhhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081           20 GVLEKKTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY   75 (75)
Q Consensus        20 ~k~~k~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY   75 (75)
                      .||.|++.++|.+.|++|+|+||++.|+++|+|+|+.   +|||||+||||+++++|+|
T Consensus         5 ~~~~~~~~~~i~~~L~lA~kaGklv~G~~~v~kaIr~gkakLVIiA~Das~~~~~ki~~   63 (125)
T 3vi6_A            5 AKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEY   63 (125)
T ss_dssp             -----CCSSCSHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEECTTSCHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHhCCeeeCHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHH
Confidence            5778889999999999999999999999999999999   9999999999999999864

>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.45  E-value=6.9e-14  Score=88.78  Aligned_cols=48  Identities=33%  Similarity=0.493  Sum_probs=45.6

Q ss_pred             HhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081           28 ESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY   75 (75)
Q Consensus        28 ~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY   75 (75)
                      +||++.|++++|+|+++.|+++|+|+|+.   +|||+|+|||++.+++|++
T Consensus         1 ~di~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~   51 (99)
T 3j21_Z            1 MDLAFELRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYY   51 (99)
T ss_dssp             CHHHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEECCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCEeECHHHHHHHHHcCCccEEEEeCCCCHHHHHHHHH
Confidence            58999999999999999999999999999   9999999999999998863

>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2

Probab=99.45  E-value=5.1e-14  Score=90.73  Aligned_cols=51  Identities=67%  Similarity=1.077  Sum_probs=45.5

Q ss_pred             hhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081           25 KTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY   75 (75)
Q Consensus        25 ~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY   75 (75)
                      +..++|.+.|++++|+|+++.|+++|+|+|+.   +|||+|+||||+.+++|+|
T Consensus         5 k~~~~i~~~L~la~kagk~v~G~~~v~kai~~gkaklVilA~D~~~~~~~~i~~   58 (105)
T 3u5e_c            5 KSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEY   58 (105)
T ss_dssp             ----CHHHHHHHHHTTSEEEESHHHHHHHHHTTCCSEEEECTTSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHH
Confidence            67899999999999999999999999999999   9999999999999999874

>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6

Probab=99.43  E-value=1.2e-13  Score=88.73  Aligned_cols=53  Identities=57%  Similarity=0.999  Sum_probs=46.2

Q ss_pred             hhhhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081           23 EKKTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY   75 (75)
Q Consensus        23 ~k~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY   75 (75)
                      +|+..++|.+.|++++|+|+++.|+++|+|+|+.   +|||+|+||||..+++|+|
T Consensus         3 ~~k~~~~i~~~L~la~kagklv~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~   58 (104)
T 4a18_G            3 KKVTQDNIQSKLALVMRSGKATLGYKSTIKAIRNGTAKLVFISNNCPTVRKSEIEY   58 (104)
T ss_dssp             -----CHHHHHHHHHHHHSEEEESHHHHHHHHHHTCCCEEEECTTSCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhCCEeECHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHH
Confidence            4667899999999999999999999999999999   9999999999999998864

>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}

Probab=99.31  E-value=1.5e-12  Score=84.29  Aligned_cols=52  Identities=23%  Similarity=0.526  Sum_probs=45.8

Q ss_pred             hhhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081           24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY   75 (75)
Q Consensus        24 k~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY   75 (75)
                      |+..+++.+.|++|.|+|+++.|+++++++|+.   +|||+|+|||++.+++|++
T Consensus         3 ~k~~~~i~~~L~la~kagkl~~G~~~v~kai~~gka~lViiA~D~~~~~~~~l~~   57 (110)
T 3cpq_A            3 RRENMDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKY   57 (110)
T ss_dssp             ----CHHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEECTTCBHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHcCCeeeCHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHH
Confidence            455789999999999999999999999999998   9999999999999988753

>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A

Probab=99.30  E-value=1.6e-12  Score=82.59  Aligned_cols=47  Identities=28%  Similarity=0.398  Sum_probs=45.1

Q ss_pred             HhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhc
Q 037081           28 ESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIE   74 (75)
Q Consensus        28 ~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIE   74 (75)
                      ++|++.|++++|+|+++.|+++++|+|++   +|||+|+|||++.+++|+
T Consensus         2 ~~i~~~L~la~kagkl~~G~~~v~kai~~gka~lViiA~D~~~~~~~~l~   51 (101)
T 1w41_A            2 VDFAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIE   51 (101)
T ss_dssp             CCHHHHHHHHHHHSEEEESHHHHHHHHHHTCCSEEEEETTSCHHHHHHHH
T ss_pred             chHHHHHHHHHHcCCEeECHHHHHHHHHcCCCcEEEEeCCCCHHHHHHHH
Confidence            68999999999999999999999999999   999999999999998875

>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}

Probab=99.20  E-value=1.4e-11  Score=78.68  Aligned_cols=48  Identities=17%  Similarity=0.246  Sum_probs=44.4

Q ss_pred             HhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081           28 ESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY   75 (75)
Q Consensus        28 ~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY   75 (75)
                      +.+.+.|.+++|+||++.|+++|+++|+.   +|||+|+||||..+++|+|
T Consensus         5 ~ki~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~   55 (101)
T 3v7q_A            5 MEWFPLLGLANRARKVVSGEDLVIKEIRNARAKLVLLTEDASSNTAKKVTD   55 (101)
T ss_dssp             CTHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHHH
T ss_pred             chhHHHhhhhhhhhhcccchhhhHHHHhcCceeEEEEeccccccchhhhcc
Confidence            45788999999999999999999999999   9999999999999998853

>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}

Probab=99.20  E-value=1.2e-11  Score=78.57  Aligned_cols=47  Identities=19%  Similarity=0.285  Sum_probs=44.0

Q ss_pred             HhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhc
Q 037081           28 ESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIE   74 (75)
Q Consensus        28 ~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIE   74 (75)
                      +.+.+.|.+++|+|+++.|+++|+|+|+.   +|||+|+||||+.+++|+
T Consensus         4 ~ki~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~   53 (101)
T 3on1_A            4 AKWLSLLGLAARARQLLTGEEQVVKAVQNGQVTLVILSSDAGIHTKKKLL   53 (101)
T ss_dssp             CHHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCEeECHHHHHHHHHcCCCcEEEEeCCCCHHHHHHHH
Confidence            45788999999999999999999999998   999999999999998875

>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}

Probab=99.12  E-value=3.8e-11  Score=74.45  Aligned_cols=43  Identities=16%  Similarity=0.376  Sum_probs=39.3

Q ss_pred             HHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081           33 RLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY   75 (75)
Q Consensus        33 ~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY   75 (75)
                      +|..++++||++.|+++|+|+|++   +|||||+||||+.+++|++
T Consensus         2 s~~~~~kagk~~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~   47 (82)
T 3v7e_A            2 SYDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPILTSSVVS   47 (82)
T ss_dssp             CHHHHHHCSEEEESHHHHHHHHTTTCEEEEEEETTSCHHHHHHHHH
T ss_pred             cHHHHHHcCCeeEcHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHH
Confidence            367789999999999999999999   9999999999999988753

>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U

Probab=99.08  E-value=9.2e-11  Score=78.42  Aligned_cols=49  Identities=18%  Similarity=0.359  Sum_probs=45.1

Q ss_pred             hHHhHHHHHHHHHHh----cceEeehHHHHHHHhh---ceeeeeCCC-Chhhhhhhc
Q 037081           26 THESINNRLALVMKS----GKYTLGYKAAIRSLRR---NLIILSSNC-PPLRKSEIE   74 (75)
Q Consensus        26 ~~~~i~~~L~la~KT----GK~~LG~KqTlK~l~~---KLVIiA~Nc-P~~~K~eIE   74 (75)
                      ++++|+.+|+.++++    |+++.|.++|+|+|+.   +|||||+|| |++.+..|+
T Consensus         4 ~~~~i~~~l~~~L~~A~~~gkl~~G~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~   60 (126)
T 2xzm_U            4 QNQQLNEVLAKVIKSSNCQDAISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVK   60 (126)
T ss_dssp             CTHHHHHHHHHHHTTTTSSSCEEESHHHHHHHHHHTCCSEEEEESSCCSTTHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHcCCEeecHHHHHHHHHcCCceEEEEeCCCChHHHHHHHH
Confidence            458999999999999    9999999999999999   999999999 788888775

>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1

Probab=98.99  E-value=6.1e-10  Score=76.28  Aligned_cols=51  Identities=14%  Similarity=0.265  Sum_probs=45.1

Q ss_pred             hhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChh-hhhhhcC
Q 037081           25 KTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPL-RKSEIEY   75 (75)
Q Consensus        25 ~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~-~K~eIEY   75 (75)
                      +....+...|++|+++|+++.|+++++|+|+.   ||||||+||||. .+.+|++
T Consensus        33 ~l~~ki~~~L~lA~kagkl~~G~kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~   87 (144)
T 2jnb_A           33 HLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPL   87 (144)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTCEEEEEEETTCSCHHHHTTSCS
T ss_pred             HHHHHHHHHHHHHHHcCCccccHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHH
Confidence            34467788899999999999999999999999   999999999995 8888764

>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A

Probab=98.98  E-value=8.3e-10  Score=74.41  Aligned_cols=50  Identities=18%  Similarity=0.358  Sum_probs=43.9

Q ss_pred             hhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChh-hhhhhc
Q 037081           25 KTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPL-RKSEIE   74 (75)
Q Consensus        25 ~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~-~K~eIE   74 (75)
                      +....+.+.|++|+++|+++.|.++++|+|+.   +|||||+||+|. .+.+|+
T Consensus        15 ~~~~ki~~~L~lA~k~gkl~~G~~~v~kai~~gkakLViiA~D~~p~~~~~~l~   68 (134)
T 2ale_A           15 ALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLP   68 (134)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcccCchHHHHHHHhCCCeEEEEeCCCCHHHHHHHHH
Confidence            34456778899999999999999999999999   999999999995 777764

>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A

Probab=98.94  E-value=1.2e-09  Score=71.73  Aligned_cols=49  Identities=18%  Similarity=0.323  Sum_probs=43.3

Q ss_pred             hHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChh-hhhhhc
Q 037081           26 THESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPL-RKSEIE   74 (75)
Q Consensus        26 ~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~-~K~eIE   74 (75)
                      ....|.+.|++|+++|+++.|.++++|+|+.   +|||||+||||. ++..|+
T Consensus         4 l~~ki~~~L~~a~k~gkl~~G~~~v~kai~~gkakLViiA~D~~~~~~~~~l~   56 (121)
T 2lbw_A            4 LNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIP   56 (121)
T ss_dssp             HHHHHHHHHHHHHTTTCEEESHHHHHHHHHHSCCCEEEECTTCSCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCccccHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHH
Confidence            3456888999999999999999999999999   999999999995 577654

>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A

Probab=98.85  E-value=3.9e-09  Score=69.31  Aligned_cols=49  Identities=12%  Similarity=0.283  Sum_probs=43.1

Q ss_pred             hHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCCh-hhhhhhc
Q 037081           26 THESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPP-LRKSEIE   74 (75)
Q Consensus        26 ~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~-~~K~eIE   74 (75)
                      ..+.+.+.|+++.++|+++.|+++++|+|+.   +|||+|+||+| ++++.|+
T Consensus        12 l~~~i~~~L~lA~kagkl~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~   64 (124)
T 2fc3_A           12 LAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLP   64 (124)
T ss_dssp             HHHHHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHH
T ss_pred             HHHHHHHHHHHHHHhCCccCCHHHHHHHHHcCCceEEEEcCCCChHHHHHHHH
Confidence            4467889999999999999999999999999   99999999966 5676654

>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1

Probab=98.84  E-value=3.6e-09  Score=70.86  Aligned_cols=50  Identities=18%  Similarity=0.326  Sum_probs=43.6

Q ss_pred             hhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhh-hhhc
Q 037081           25 KTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRK-SEIE   74 (75)
Q Consensus        25 ~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K-~eIE   74 (75)
                      +....+.+.|+++.++|+++.|+++++|+|+.   +|||+|+||+|..+ +.|+
T Consensus        24 ~l~~ki~~~L~lA~kagklv~G~~~v~kal~~gkaklViiA~D~~~~~~~~~l~   77 (135)
T 2aif_A           24 DLNNKIINLVQQACNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLP   77 (135)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcccCHHHHHHHHHcCCCeEEEEecCCChHHHHhHHH
Confidence            33466899999999999999999999999998   99999999999843 6553

>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...

Probab=98.83  E-value=4.4e-09  Score=68.61  Aligned_cols=49  Identities=16%  Similarity=0.299  Sum_probs=43.0

Q ss_pred             hHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCCh-hhhhhhc
Q 037081           26 THESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPP-LRKSEIE   74 (75)
Q Consensus        26 ~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~-~~K~eIE   74 (75)
                      ..+.+.+.|+++.++|+++.|+++++|+|+.   +|||+|+||+| ++++.|+
T Consensus        13 l~~~i~~~L~~A~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~   65 (120)
T 1vq8_F           13 LEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIP   65 (120)
T ss_dssp             HHHHHHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHH
T ss_pred             HHHHHHHHHHHHHHcCCEeECHHHHHHHHHcCCceEEEEeCCCChHHHHHHHH
Confidence            3466889999999999999999999999999   99999999977 4676654

>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1

Probab=98.81  E-value=4.7e-09  Score=68.38  Aligned_cols=49  Identities=18%  Similarity=0.303  Sum_probs=42.9

Q ss_pred             hHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChh-hhhhhc
Q 037081           26 THESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPL-RKSEIE   74 (75)
Q Consensus        26 ~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~-~K~eIE   74 (75)
                      ..+.+.+.|+++.++|+++.|+++++|+|+.   +|||+|+||+|. ++..|+
T Consensus        11 l~~~i~~~L~lA~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~   63 (119)
T 1rlg_A           11 MQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLP   63 (119)
T ss_dssp             HHHHHHHHHHHHHHHSEEEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHHH
T ss_pred             HHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCCcEEEEeCCCChHHHHHHHH
Confidence            3467889999999999999999999999998   999999999774 566654

>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}

Probab=98.77  E-value=9.3e-09  Score=67.99  Aligned_cols=50  Identities=14%  Similarity=0.227  Sum_probs=43.4

Q ss_pred             hhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChh-hhhhhc
Q 037081           25 KTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPL-RKSEIE   74 (75)
Q Consensus        25 ~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~-~K~eIE   74 (75)
                      .....+-+-|++++++|+++.|+++++|+|+.   +|||+|+||+|. +++.|+
T Consensus        14 ~l~~kil~~L~lA~kagklv~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~   67 (122)
T 3o85_A           14 ELSLELLNLVKHGASLQAIKRGANEALKQVNRGKAELVIIAADADPIEIVLHLP   67 (122)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTCSSGGGGTTHH
T ss_pred             HHHHHHHHHHHHHHHhCCEeEcHHHHHHHHHcCCceEEEEeCCCChHHHHHHHH
Confidence            44566888999999999999999999999999   999999999775 566653

>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M

Probab=98.46  E-value=7.3e-08  Score=66.50  Aligned_cols=47  Identities=19%  Similarity=0.340  Sum_probs=40.4

Q ss_pred             HHhHHHHHHHHHHh----cceEeehHHHHHHHhh---ceeeeeCCC-Chhhhhhh
Q 037081           27 HESINNRLALVMKS----GKYTLGYKAAIRSLRR---NLIILSSNC-PPLRKSEI   73 (75)
Q Consensus        27 ~~~i~~~L~la~KT----GK~~LG~KqTlK~l~~---KLVIiA~Nc-P~~~K~eI   73 (75)
                      .+|++.+|+.++++    |++..|.++|.|+|+.   +|||||+|| |+.....|
T Consensus        21 ~md~~~aL~~vLk~A~~~g~l~~G~~et~Kal~kg~a~LvvLA~D~~~~~i~k~i   75 (143)
T 3u5c_M           21 EVTIEDALKVVLRTALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLV   75 (143)
T ss_dssp             CSCSSHHHHHHHHHHHHTTCEEESHHHHHHHHSSTTCSCEECCSCCSTTHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCCEeEcHHHHHHHHhcCceeEEEEeCCCCHHHHHHHH
Confidence            46778887777777    9999999999999988   999999999 57777665

>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A

Probab=98.32  E-value=7.1e-07  Score=58.40  Aligned_cols=47  Identities=19%  Similarity=0.344  Sum_probs=35.5

Q ss_pred             HhHHHHHHHHHH-hcceEeehHHHHHHHhh---ceeeeeCCCChh-hhhhhc
Q 037081           28 ESINNRLALVMK-SGKYTLGYKAAIRSLRR---NLIILSSNCPPL-RKSEIE   74 (75)
Q Consensus        28 ~~i~~~L~la~K-TGK~~LG~KqTlK~l~~---KLVIiA~NcP~~-~K~eIE   74 (75)
                      ++++.++...++ .|+++.|+++++|+|+.   +|||||+||+|. ++..|+
T Consensus        14 ~~l~~k~~~ll~~Agkl~~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~   65 (120)
T 1xbi_A           14 EEIQKELLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLP   65 (120)
T ss_dssp             HHHHHHHHHHHHTCSEEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHH
T ss_pred             HHHHHHHHHHHHHcCCccccHHHHHHHHHcCCceEEEEcCCCChHHHHHHHH
Confidence            444444433332 39999999999999999   999999999774 676654

>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=97.18  E-value=0.00011  Score=55.15  Aligned_cols=35  Identities=9%  Similarity=0.191  Sum_probs=29.8

Q ss_pred             HhcceEeehHHHHHHHhh---ceeeeeCCCCh-hhhhhh
Q 037081           39 KSGKYTLGYKAAIRSLRR---NLIILSSNCPP-LRKSEI   73 (75)
Q Consensus        39 KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~-~~K~eI   73 (75)
                      +.|++..|.++|+++|+.   +|||||+||+| +++..|
T Consensus       132 ~~~~L~~G~keV~KaIekgkAkLVIIA~DasP~ei~~~L  170 (266)
T 2zkr_f          132 RPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFL  170 (266)
T ss_dssp             SCCCCCBSHHHHHHHHHTTCCSEEEEESCCSSSTTTTHH
T ss_pred             CCCeeeeChHHHHHHHHhCCceEEEEecCCCHHHHHHHH
Confidence            468999999999999999   99999999965 555443

>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}

Probab=96.63  E-value=0.0029  Score=44.49  Aligned_cols=39  Identities=18%  Similarity=0.274  Sum_probs=31.0

Q ss_pred             HhHHHHHHHHHHhcceEeehHHHHHHH--hh---ceeeeeCCCC
Q 037081           28 ESINNRLALVMKSGKYTLGYKAAIRSL--RR---NLIILSSNCP   66 (75)
Q Consensus        28 ~~i~~~L~la~KTGK~~LG~KqTlK~l--~~---KLVIiA~NcP   66 (75)
                      ..+..-|+.|...++++.|.++|.|+|  ..   ++||||.||.
T Consensus        21 ~al~evLk~A~~~~~l~~G~kEt~KaL~~~k~~a~lcvLA~D~d   64 (165)
T 2kg4_A           21 DALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADED   64 (165)
T ss_dssp             HHHHHHHHHHHHHTCEEECGGGHHHHHHHCTTTEEEEEEECCTG
T ss_pred             HHHHHHHHHHHHcCCeeecHHHHHHHHhcCCCcEEEEEEeCCCC
Confidence            334444555666899999999999999  43   9999999993

>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G

Probab=96.22  E-value=0.0028  Score=41.69  Aligned_cols=32  Identities=9%  Similarity=0.236  Sum_probs=26.5

Q ss_pred             hcceEeehHHHHHHHhh---ceeeeeCCCCh-hhhh
Q 037081           40 SGKYTLGYKAAIRSLRR---NLIILSSNCPP-LRKS   71 (75)
Q Consensus        40 TGK~~LG~KqTlK~l~~---KLVIiA~NcP~-~~K~   71 (75)
                      ...+..|.+++.|+|++   +|||||+||.| ++..
T Consensus        23 ~~~l~~G~~~v~kaI~~gka~LVvIA~D~~p~~i~~   58 (113)
T 3jyw_G           23 PYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVV   58 (113)
T ss_dssp             SSCEEESHHHHHHTTTTTCCSEEEECSCCSSHHHHT
T ss_pred             CchhhchHHHHHHHHHcCCceEEEEeCCCCHHHHHH
Confidence            34577899999999999   99999999955 5544

>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F

Probab=91.78  E-value=0.16  Score=37.88  Aligned_cols=28  Identities=11%  Similarity=0.260  Sum_probs=23.8

Q ss_pred             eEeehHHHHHHHhh---ceeeeeCCC-Chhhh
Q 037081           43 YTLGYKAAIRSLRR---NLIILSSNC-PPLRK   70 (75)
Q Consensus        43 ~~LG~KqTlK~l~~---KLVIiA~Nc-P~~~K   70 (75)
                      +.-|.+.+.++|++   +|||||+|| |.+..
T Consensus       125 lk~GvneVtKaIekgKAqLVVIA~DvdPielv  156 (255)
T 4a17_F          125 LKYGLNHITTLIENKQAKLVVIAHDVDPIELV  156 (255)
T ss_dssp             EEECHHHHHHHHHTSCCSEEEEESCCSSTHHH
T ss_pred             eecchHHHHHHHHcCCceEEEEeCCCChHHHH
Confidence            45699999999999   999999999 55544

>2bjq_A MFP2A; motility, nematode, MSP; 1.75A {Ascaris suum} SCOP: b.169.1.1 b.169.1.1

Probab=89.29  E-value=0.0087  Score=46.56  Aligned_cols=42  Identities=21%  Similarity=0.110  Sum_probs=35.9

Q ss_pred             cccceecccccceehhhhhhhhHHhHHHHHHHHHHhcceEeeh
Q 037081            5 RRGTFVEARHGGYWLGVLEKKTHESINNRLALVMKSGKYTLGY   47 (75)
Q Consensus         5 ~~~~~~~~~~~~~~~~k~~k~~~~~i~~~L~la~KTGK~~LG~   47 (75)
                      -.-+|..-+-|+=|++ +.++..+++|..|.+++|+||+++|-
T Consensus         6 ~eD~Wad~~~g~pfp~-k~vk~~~~~N~yvALwyKsGk~vlGR   47 (345)
T 2bjq_A            6 FEDTWAYNTIGSPFPD-NPVRVKGQQNMYVALWYKFGKPIHGR   47 (345)
T ss_dssp             CCCEEEEEETTSCCCS-SBCBCTTCSSCEEEEEEETTEEEEEE
T ss_pred             cccchhhccccCcccc-ccccCCCccceEEEEEEEcCcEEEee
Confidence            3457999999999999 45556788999999999999999993

>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}

Probab=81.22  E-value=2  Score=29.15  Aligned_cols=27  Identities=26%  Similarity=0.402  Sum_probs=22.4

Q ss_pred             HhcceEeehHHHHHHHhh---ceeeeeCCC
Q 037081           39 KSGKYTLGYKAAIRSLRR---NLIILSSNC   65 (75)
Q Consensus        39 KTGK~~LG~KqTlK~l~~---KLVIiA~Nc   65 (75)
                      ++|+++.|.+.|++++..   ..+||+.|.
T Consensus        43 d~g~~~yG~~ev~~Ale~GAVetLlv~e~l   72 (166)
T 3ir9_A           43 DSGKVAYGESQVRANLEINSVDVLLLSEDL   72 (166)
T ss_dssp             CTTCEEESHHHHHHHHTTTCEEEEEEETTC
T ss_pred             CCCcEEEcHHHHHHHHHhCCceEEEEecCc
Confidence            589999999999999998   666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	75
d1t0kb_	97	d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L3	2e-14
d2bo1a1	100	d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L3	2e-12
d1w3ex1	98	d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30	2e-10
d1vqof1	119	d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeo	9e-06
d2fc3a1	124	d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyr	1e-05
d1xbia1	115	d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeo	1e-04
d1rlga_	113	d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Arc	0.001

>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 97

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Eukaryotic ribosomal protein L30 (L30e)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.8 bits (145), Expect = 2e-14
 Identities = 32/50 (64%), Positives = 42/50 (84%), Gaps = 3/50 (6%)

Query: 29 SINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          SIN +LALV+KSGKYTLGYK+ ++SLR+    LII+++N P LRKSE+EY
Sbjct: 1  SINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEY 50

>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Length = 100

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Eukaryotic ribosomal protein L30 (L30e)
species: Archaeon Thermococcus celer [TaxId: 2264]

 Score = 54.8 bits (132), Expect = 2e-12
 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 3/49 (6%)

Query: 30 INNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          I   L  V+ SGKYTLGY+  ++SL+     LII++ N  P RK ++EY
Sbjct: 3  IAFELRKVIDSGKYTLGYRKTVQSLKMGGSKLIIIARNTRPDRKEDLEY 51

>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Eukaryotic ribosomal protein L30 (L30e)
species: Archaeon Thermococcus celer [TaxId: 2264]

 Score = 49.7 bits (119), Expect = 2e-10
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 30 INNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
              L     +GK  +G + +I+  +     LII++ N  P  K +IEY
Sbjct: 3  FAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEY 51

>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 119

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 38.3 bits (89), Expect = 9e-06
 Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
              +     L +   +G    G     +S+ R    L+ ++ +  P        
Sbjct: 10 ADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIP 64

>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 56636]} Length = 124

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Aeropyrum pernix [TaxId: 56636]

 Score = 37.9 bits (88), Expect = 1e-05
 Identities = 6/55 (10%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSEIEY 75
          +   E     +    ++G+   G     +++ R    L++++ +  P        
Sbjct: 10 EDLAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLP 64

>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 35.2 bits (81), Expect = 1e-04
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%)

Query: 28 ESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRK 70
          E     L  V K+ K   G     +++ R    L+I++ +  P   
Sbjct: 11 EIQKELLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEV 56

>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 32.9 bits (75), Expect = 0.001
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 28 ESINNRLALVMKSGKYTLGYKAAIRSLRRN---LIILSSNCPPLRKSE 72
              + L  V +SGK   G     +++ R    L+ ++ +  P     
Sbjct: 7  NEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVA 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	75
d1w3ex1	98	Eukaryotic ribosomal protein L30 (L30e) {Archaeon	99.54
d2bo1a1	100	Eukaryotic ribosomal protein L30 (L30e) {Archaeon	99.5
d1t0kb_	97	Eukaryotic ribosomal protein L30 (L30e) {Baker's y	99.34
d2fc3a1	124	Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 5	98.79
d1vqof1	119	Ribosomal protein L7ae {Archaeon Haloarcula marism	98.77
d2aifa1	115	Ribosomal protein L7ae {Cryptosporidium parvum [Ta	98.76
d1rlga_	113	Ribosomal protein L7ae {Archaeon Archaeoglobus ful	98.73
d1xbia1	115	Ribosomal protein L7ae {Archaeon Methanococcus jan	98.48
d2ozba1	125	Spliceosomal 15.5kd protein {Human (Homo sapiens)	98.39
d2alea1	126	Small nuclear ribonucleoprotein-associated protein	98.1
d2vgna3	104	Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}	81.75
d1x52a1	111	Cell division protein pelota {Human (Homo sapiens)	80.57

>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Eukaryotic ribosomal protein L30 (L30e)
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=99.54  E-value=1.9e-15  Score=95.43  Aligned_cols=48  Identities=29%  Similarity=0.443  Sum_probs=46.0

Q ss_pred             HhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081           28 ESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY   75 (75)
Q Consensus        28 ~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY   75 (75)
                      +||+++|++|+|+||+++|+++++|+|+.   ||||||+|||++.+++|+|
T Consensus         1 ~d~~~~L~~a~kaGklv~G~~~v~kal~~gkaklVilA~D~~~~~~~~i~~   51 (98)
T d1w3ex1           1 VDFAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEY   51 (98)
T ss_dssp             CCHHHHHHHHHHHSEEEESHHHHHHHHHHTCCSEEEEETTSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCEEEcHHHHHHHHHcCCccEEEEECCCCHHHHHHHHH
Confidence            58999999999999999999999999999   9999999999999999864

>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Eukaryotic ribosomal protein L30 (L30e)
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=99.50  E-value=6e-15  Score=93.05  Aligned_cols=47  Identities=45%  Similarity=0.726  Sum_probs=45.2

Q ss_pred             HhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhc
Q 037081           28 ESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIE   74 (75)
Q Consensus        28 ~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIE   74 (75)
                      +||.++|++++|+||+++|+++++|+|+.   ||||+|+||||+.+.+|+
T Consensus         1 ~d~~~~L~~a~kaGklv~G~~~v~kai~~gkaklVilA~D~~~~~~~~i~   50 (100)
T d2bo1a1           1 VDIAFELRKVIDSGKYTLGYRKTVQSLKMGGSKLIIIARNTRPDRKEDLE   50 (100)
T ss_dssp             CCHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCEEEcHHHHHHHHHcCCceEEEEeCCCCHHHHHHHH
Confidence            58999999999999999999999999999   999999999999999885

>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Eukaryotic ribosomal protein L30 (L30e)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=4.9e-13  Score=83.54  Aligned_cols=46  Identities=67%  Similarity=1.069  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhc
Q 037081           29 SINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIE   74 (75)
Q Consensus        29 ~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIE   74 (75)
                      +|++.|.+|+|+|++++|+++++|+|+.   ||||+|+||||..+++++
T Consensus         1 ~I~~~L~la~Kagklv~G~~~v~k~i~~gkaklVilA~D~~~~~~~~i~   49 (97)
T d1t0kb_           1 SINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELE   49 (97)
T ss_dssp             CHHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEECTTCCHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCeeEcHHHHHHHHHcCCCcEEEEeCCCCHHHHHHHH
Confidence            6899999999999999999999999999   999999999999999875

>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.79  E-value=4.7e-09  Score=67.75  Aligned_cols=49  Identities=12%  Similarity=0.290  Sum_probs=43.0

Q ss_pred             hhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCC-hhhhhhh
Q 037081           25 KTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCP-PLRKSEI   73 (75)
Q Consensus        25 ~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP-~~~K~eI   73 (75)
                      ...+.|.+.|.++.++|+++.|.++++|+|+.   +|||||+||. .+.+..|
T Consensus        11 ~l~~~i~~~L~~a~k~gkl~~G~~~v~k~i~~~ka~lVvlA~D~~p~~~~~~l   63 (124)
T d2fc3a1          11 DLAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHL   63 (124)
T ss_dssp             HHHHHHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTH
T ss_pred             HHHHHHHHHHHHHHHcCCEeecHHHHHHHHHcCCCeEEEEeCCCChHHHHHHH
Confidence            34478999999999999999999999999999   9999999994 4676654

>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.77  E-value=6.3e-09  Score=66.70  Aligned_cols=49  Identities=14%  Similarity=0.251  Sum_probs=42.5

Q ss_pred             hhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCC-hhhhhhh
Q 037081           25 KTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCP-PLRKSEI   73 (75)
Q Consensus        25 ~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP-~~~K~eI   73 (75)
                      +..+.|.+.|.++.++|+++.|.++++++|+.   +|||||+||. .+..+.|
T Consensus        11 ~l~~~i~~ll~~a~kagkl~~G~~~v~k~l~~gka~lVilA~D~~p~~~~~~l   63 (119)
T d1vqof1          11 DLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHI   63 (119)
T ss_dssp             HHHHHHHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTH
T ss_pred             HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCCceEEEEECCCChHHHHHHH
Confidence            34467888899999999999999999999999   9999999995 5666654

>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium parvum [TaxId: 5807]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Cryptosporidium parvum [TaxId: 5807]

Probab=98.76  E-value=5.2e-09  Score=66.54  Aligned_cols=48  Identities=17%  Similarity=0.273  Sum_probs=41.6

Q ss_pred             hHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCCh-hhhhhh
Q 037081           26 THESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPP-LRKSEI   73 (75)
Q Consensus        26 ~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~-~~K~eI   73 (75)
                      ...-|..-|+.+.++|+++.|.++++|+|+.   +|||||+||+| +++..|
T Consensus         8 ~~~~i~~ll~~A~~~~~l~~G~~~v~k~i~~g~a~lViiA~D~~p~~~~~~i   59 (115)
T d2aifa1           8 LNNKIINLVQQACNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHL   59 (115)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCeeecHHHHHHHHHcCCCcEEEEeCCCCchhHHHHH
Confidence            3456888999999999999999999999999   99999999965 565554

>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.73  E-value=7.4e-09  Score=65.35  Aligned_cols=46  Identities=22%  Similarity=0.378  Sum_probs=40.7

Q ss_pred             HhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCC-Chhhhhhh
Q 037081           28 ESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNC-PPLRKSEI   73 (75)
Q Consensus        28 ~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~Nc-P~~~K~eI   73 (75)
                      +.+-+-|.+|.++|+++.|.++++|+|+.   +|||||+|| |.+.+..|
T Consensus         7 ~ki~~~l~~a~~agkl~~G~~~v~k~l~~~ka~lViiA~D~~p~~~~~~i   56 (113)
T d1rlga_           7 NEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHL   56 (113)
T ss_dssp             HHHHHHHHHHHHHSEEEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHH
T ss_pred             HHHHHHHHHHHHhCCccccHHHHHHHHHcCCceEEEEeCCCCcHHHHHHH
Confidence            55777899999999999999999999999   999999999 66676654

>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.48  E-value=7.5e-08  Score=61.11  Aligned_cols=44  Identities=18%  Similarity=0.281  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCC-hhhhhhh
Q 037081           30 INNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCP-PLRKSEI   73 (75)
Q Consensus        30 i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP-~~~K~eI   73 (75)
                      .+.-|.++.++|+++.|.++++|+|+.   ++||||+||. .+....|
T Consensus        13 ~~~~l~~~~ka~~l~~G~~~v~kai~~~~a~lVilA~D~~p~~~~~~l   60 (115)
T d1xbia1          13 QKELLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHL   60 (115)
T ss_dssp             HHHHHHHHHTCSEEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTH
T ss_pred             HHHHHHHHHHhCCccccHHHHHHHHHcCCCeEEEEeCCCCcHHHHHHH
Confidence            345688899999999999999999999   9999999995 5666554

>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Spliceosomal 15.5kd protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=3e-07  Score=59.44  Aligned_cols=44  Identities=16%  Similarity=0.336  Sum_probs=38.8

Q ss_pred             hhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChh
Q 037081           25 KTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPL   68 (75)
Q Consensus        25 ~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~   68 (75)
                      +....+-+-|+++.++|++..|.+++.|+|+.   +|||||+||+|.
T Consensus        14 ~l~~kil~ll~~a~~~~~l~~G~~ev~k~i~~gka~lViiA~D~~p~   60 (125)
T d2ozba1          14 HLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPL   60 (125)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEESHHHHHHHHHHTCEEEEEEETTCSSG
T ss_pred             HHHHHHHHHHHHHHHcCCcccChHHHHHHHHcCCceEEEEeCCCChH
Confidence            33455777889999999999999999999999   999999999764

>d2alea1 d.79.3.1 (A:1-126) Small nuclear ribonucleoprotein-associated protein 1, Snu13p {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Small nuclear ribonucleoprotein-associated protein 1, Snu13p
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=98.10  E-value=3.6e-06  Score=54.44  Aligned_cols=46  Identities=20%  Similarity=0.344  Sum_probs=39.1

Q ss_pred             HHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCCh-hhhhh
Q 037081           27 HESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPP-LRKSE   72 (75)
Q Consensus        27 ~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~-~~K~e   72 (75)
                      ..-+-.-|.++.++|++..|.+++.|+|+.   +|||||+||.| ++..-
T Consensus        17 ~~~i~~ll~~a~~~~~l~~G~~ev~K~i~~g~a~lVviA~D~~p~~~~~~   66 (126)
T d2alea1          17 TQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLH   66 (126)
T ss_dssp             HHHHHHHHHHHHHTTCEEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTH
T ss_pred             HHHHHHHHHHHHHcCCcccCHHHHHHHHHcCCCeEEEEeCCCChHHHHHH
Confidence            345677788899999999999999999999   99999999955 55543

>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=81.75  E-value=0.83  Score=27.49  Aligned_cols=40  Identities=13%  Similarity=0.158  Sum_probs=29.2

Q ss_pred             hhhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCC
Q 037081           24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNC   65 (75)
Q Consensus        24 k~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~Nc   65 (75)
                      ++..+.|-..|..  ++|+++.|.+.+.+++..   +-++|+.+.
T Consensus         4 ~~~~e~f~~~l~k--d~~~~~YG~~~v~~A~e~gAv~~LlIsd~l   46 (104)
T d2vgna3           4 IMVMDEFLLHLNK--DDDKAWYGEKEVVKAAEYGAISYLLLTDKV   46 (104)
T ss_dssp             HHHHHHHHHHHTT--TCSSEEESHHHHHHHHHTTCEEEEEEETTG
T ss_pred             HHHHHHHHHHHhc--CCCEEEECHHHHHHHHHhCCceEEEEeccc
Confidence            3444445444332  689999999999999999   777777764

>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: Cell division protein pelota
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.57  E-value=0.65  Score=28.41  Aligned_cols=40  Identities=13%  Similarity=0.194  Sum_probs=29.1

Q ss_pred             hhhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCC
Q 037081           24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNC   65 (75)
Q Consensus        24 k~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~Nc   65 (75)
                      ++..+.|-..|..  ++|+++.|.+++.+++..   +-++|+.|.
T Consensus        15 ~k~~e~f~~~l~k--~~~~~~YG~~ev~~Ale~GAV~~LLisd~l   57 (111)
T d1x52a1          15 VKALDDFYKMLQH--EPDRAFYGLKQVEKANEAMAIDTLLISDEL   57 (111)
T ss_dssp             HHHHHHHHHHHHS--CGGGEEESHHHHHHHHHTTCEEEEEEEHHH
T ss_pred             HHHHHHHHHHHhC--CCCeEEECHHHHHHHHHcCCCcEEEEeccc
Confidence            3444555555433  679999999999999999   777777653