Citrus Sinensis ID: 037087

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
MERDTTVTTGYGDLSDDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNFIYKHLKRDNSMRLMIYCTYKNPYDTDPFNDLITYFSIFPDKTLTDLHIQDLEPTMKGNTTGPYDGIFLLLGDHTHINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYEEMRDLGITGLWFSVNILKESLISVRE
cccccccccccccccHHHHHHHHHcccHHHHHHHccccccHHHHcccHHHHHHHHHccccccEEEEEEEcccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEccccEEEEEEcccccEEEcccccccccccccccccEEEEEEEcccccEEEEEEEEEEcccccccccccccEEEEEcccccEEEcccccccccccccccccEEEccEEEEEEEcccccEEEEEEEccccEEEEEcccccccccccccccccccEEEEEccEEEEEEEcccccEEEEEEEccccEEEEEEEcccccccccEEEEEcccEEEEEcccEEEEEEccccEEEEEEEEccEEEEEEEEcccccccc
ccHHHHcccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEEcccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEcccccEEEEccccccEEEcccccccccccccccEEEEEEEEccccccEEEEEEEEEccccccccccccEEEEEEEEccccEEEEEcccccccccccccccEEEEEEEEEEEEEccccEEEEEEEcccccccccccccccccccccccccEEEEEEEEccEEEEEEEcccccEEEEEEEEccEEcEEEEEcccccccEEEEEEEccEEEEEccccEEEEEcccccEEEEEEEccccEEEEEEcccEEEEcc
merdttvttgygdlsdDVMVETLSRLPVKSLMRFRcvckswyclvkdpnfiykhlkrdnsMRLMIYCtyknpydtdpfndlityfsifpdktltdlhiqdleptmkgnttgpydGIFLLLgdhthinlwnvsmdeyrvvprykvrlpcdtrahssyyglgvdpvanDFKLVLVLTLWDenrqwtydefspaavyNFTTNcwrdlggfpmsrhyrfegaddvYLNGFCYWVVHRPDYYKEILKFSMTDEVfqviqgpnipqLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMkgrswtkqftfgpfietyqpltfwrkgefllqssdkrlvlYDSTYEEMRDLGITGLWFSVNILKESLISVRE
merdttvttgygdlsddvmVETLSrlpvkslmRFRCVCKSwyclvkdpnfiYKHLKRDNSMRLMIYCTYKNPYDTDPFNDLITYFSIFPDKTLTDLHIQDLEPTMKGNTTGPYDGIFLLLGDHTHINLWNVSMDEYRVVPRYKVRLPCDTRAHSSyyglgvdpvANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYEEMRDLGITGLWFSVNILKESLISVRE
MERDTTVTTGYGDLSDDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNFIYKHLKRDNSMRLMIYCTYKNPYDTDPFNDLITYFSIFPDKTLTDLHIQDLEPTMKGNTTGPYDGIFLLLGDHTHINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYEEMRDLGITGLWFSVNILKESLISVRE
*********GYGDLSDDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNFIYKHLKRDNSMRLMIYCTYKNPYDTDPFNDLITYFSIFPDKTLTDLHIQDLEPTMKGNTTGPYDGIFLLLGDHTHINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYEEMRDLGITGLWFSVNILKESLI****
****************DVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNFIYKHLKRDNSMRLMIYCTYKNPYDTDPFNDLITYFSIFPDKTLTDLHIQDLEPTMKGNTTGPYDGIFLLLGDHTHINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYEEMRDLGITGLWFSVNILKESLISVR*
*********GYGDLSDDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNFIYKHLKRDNSMRLMIYCTYKNPYDTDPFNDLITYFSIFPDKTLTDLHIQDLEPTMKGNTTGPYDGIFLLLGDHTHINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYEEMRDLGITGLWFSVNILKESLISVRE
**********YGDLSDDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNFIYKHLKRDNSMRLMIYCTYKNPYDTDPFNDLITYFSIFPDKTLTDLHIQDLEPTMKGNTTGPYDGIFLLLGDHTHINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYEEMRDLGITGLWFSVNILKESLISVRE
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MERDTTVTTGYGDLSDDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNFIYKHLKRDNSMRLMIYCTYKNPYDTDPFNDLITYFSIFPDKTLTDLHIQDLEPTMKGNTTGPYDGIFLLLGDHTHINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYEEMRDLGITGLWFSVNILKESLISVRE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query370 2.2.26 [Sep-21-2011]
Q8GXC7427 F-box/kelch-repeat protei yes no 0.918 0.796 0.238 7e-15
Q9LU24360 Putative F-box protein At no no 0.691 0.711 0.272 3e-13
Q9SU30413 F-box protein CPR30 OS=Ar no no 0.843 0.755 0.244 5e-13
Q9LUP5388 F-box/kelch-repeat protei no no 0.754 0.719 0.246 5e-11
Q9LUP8388 Putative F-box protein At no no 0.827 0.788 0.25 6e-11
Q9CAE7370 Putative F-box protein At no no 0.572 0.572 0.263 3e-10
Q9LUJ6383 Putative F-box protein At no no 0.7 0.676 0.233 3e-10
Q4PSN6410 F-box/WD-40 repeat-contai no no 0.691 0.624 0.249 4e-10
Q9SUY0402 F-box protein At4g22390 O no no 0.9 0.828 0.218 1e-09
Q9LUP1381 Putative F-box/kelch-repe no no 0.589 0.572 0.265 1e-09
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function desciption
 Score = 82.0 bits (201), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 162/398 (40%), Gaps = 58/398 (14%)

Query: 14  LSDDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNFIYKHLK---RDNSMRLM---IYC 67
           L  +++ E L RLP KS+ RFRCV K +  L  DP F   HL    R+ S+R +   +  
Sbjct: 36  LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIV 95

Query: 68  TYKNPYDTD------------------PFNDLITYFSIFPDKTLTDLHIQDLEPTMKGNT 109
           +  N Y  D                  P  D  + FS      + D    D    +K N 
Sbjct: 96  SSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKLNA 155

Query: 110 ----------TGPYDGIFLLLGDHTHINLWN-VSMDEYRVVPRYKVRLPCDTRAHSSYYG 158
                      G  +G+  +      + L+N  + D  R+   ++ +     R +   YG
Sbjct: 156 KSYRRNWVEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYG 215

Query: 159 LGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRDLGGFPMSRHYRFEGA 218
            G D + +D+KLV ++         T ++   A+VY+   + WR +       H      
Sbjct: 216 FGFDGLTDDYKLVKLVA--------TSEDILDASVYSLKADSWRRICNLNY-EHNDGSYT 266

Query: 219 DDVYLNGFCYWVVHRPDYYKE-ILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIY 277
             V+ NG  +WV     + +  ++ F +  E F+ +  P+  +  ++  S    +++G  
Sbjct: 267 SGVHFNGAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSN---FVVGSL 323

Query: 278 DDYLSILYSEEMAHSFDLWIM----KGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSD 333
           +  L ++ S    H  D+W+M    + +SW++         + +PL   +  E +L   D
Sbjct: 324 NGRLCVVNSCYDVHD-DIWVMSEYGEAKSWSR-IRINLLYRSMKPLCSTKNDEEVLLELD 381

Query: 334 KRLVLYDSTYEEMRDLGITGL----WFSVNILKESLIS 367
             LVLY+       +LGI G+     F  N   ESLIS
Sbjct: 382 GDLVLYNFETNASSNLGICGVKLSDGFEANTYVESLIS 419

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 Back     alignment and function description
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function description
>sp|Q9LUP5|FBK59_ARATH F-box/kelch-repeat protein At3g17530 OS=Arabidopsis thaliana GN=At3g17530 PE=2 SV=2 Back     alignment and function description
>sp|Q9LUP8|FB153_ARATH Putative F-box protein At3g17490 OS=Arabidopsis thaliana GN=At3g17490 PE=4 SV=1 Back     alignment and function description
>sp|Q9CAE7|FB138_ARATH Putative F-box protein At3g10430 OS=Arabidopsis thaliana GN=At3g10430 PE=4 SV=1 Back     alignment and function description
>sp|Q9LUJ6|FB176_ARATH Putative F-box protein At3g22650 OS=Arabidopsis thaliana GN=At3g22650 PE=4 SV=1 Back     alignment and function description
>sp|Q4PSN6|FBW1_ARATH F-box/WD-40 repeat-containing protein 1 OS=Arabidopsis thaliana GN=FBW1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3 Back     alignment and function description
>sp|Q9LUP1|FBK61_ARATH Putative F-box/kelch-repeat protein At3g17570 OS=Arabidopsis thaliana GN=At3g17570 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
224119696367 predicted protein [Populus trichocarpa] 0.881 0.888 0.312 1e-43
224117590441 f-box family protein [Populus trichocarp 0.940 0.789 0.298 7e-32
224133722443 predicted protein [Populus trichocarpa] 0.937 0.783 0.284 4e-30
356558779405 PREDICTED: F-box/kelch-repeat protein At 0.902 0.824 0.295 7e-29
356571461405 PREDICTED: F-box/kelch-repeat protein At 0.927 0.846 0.294 1e-28
255636503405 unknown [Glycine max] 0.902 0.824 0.292 3e-28
293337865370 SFBBbeta protein, partial [Malus x domes 0.867 0.867 0.300 8e-28
224119700272 predicted protein [Populus trichocarpa] 0.594 0.808 0.338 9e-28
197253333394 SFBB21-beta [Pyrus x bretschneideri] 0.870 0.817 0.301 1e-27
301069172393 MdFBX17 [Malus x domestica] 0.9 0.847 0.306 2e-27
>gi|224119696|ref|XP_002318137.1| predicted protein [Populus trichocarpa] gi|222858810|gb|EEE96357.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 191/375 (50%), Gaps = 49/375 (13%)

Query: 14  LSDDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNFIYKHLKRDNSMRLMIYCTYKNPY 73
           L +DV++E LS LPVK+L++F+CVCKSWY ++   NFI  HL               N Y
Sbjct: 9   LPEDVIIEILSLLPVKTLLQFKCVCKSWYGIITSSNFISLHL--------------NNHY 54

Query: 74  DTDPFNDLITYF------SIFPDKTLTDLHIQDLEPTMKGNTTGPYDGIFLLLG-DHTHI 126
           +      L+ +F       +F D++LTDL  Q L+P ++G   GP +GIF +   D +  
Sbjct: 55  NNIKSGHLLAHFVCPQLLELFQDESLTDLSHQGLDPPIRGRLCGPCNGIFYVDSEDSSGS 114

Query: 127 NLWNVSMDEYRVVP---RYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQW 183
            LWN +  E++++P   R K  LP     +   YG G DPV ND+K+V++   +   R++
Sbjct: 115 GLWNPATKEFKLLPEKIRNKSSLPL---YYEDSYGFGFDPVTNDYKVVVIRESY--TREY 169

Query: 184 TYDEF--SPAAVYNFTTNCWRDLG----GFPMSRHYRFEGADDVYLNGFCYWVVHRPDYY 237
             ++F  S   VY   T+ WR  G    G+ +  +Y +   D VY     YW      + 
Sbjct: 170 YLEKFPSSLVIVYTLRTDSWRCWGSLDQGYTLLGNYCYTNVDGVY-----YWQAGHGVHM 224

Query: 238 KEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWI 297
             IL F+M  + FQ IQ P+       Y+       L +Y D ++      +    D+W+
Sbjct: 225 NVILSFNMATDAFQEIQEPD-------YDKPAYSTRLILYHDSIAFSTVHNVEKFLDIWV 277

Query: 298 MKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYEEMRDLGI--TGLW 355
           +    W +QF   P +E   P+  W+ G  +L S + +L+LYD+  +E++DL    TG+ 
Sbjct: 278 LNEGCWIRQFKSRPLLELRNPVAHWKNGNVILDSDNDQLMLYDTNKQELKDLRFKGTGVC 337

Query: 356 FSVNILKESLISVRE 370
           + + + +ESL+S+++
Sbjct: 338 YEILVYRESLVSIKD 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224117590|ref|XP_002331674.1| f-box family protein [Populus trichocarpa] gi|222874093|gb|EEF11224.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224133722|ref|XP_002327664.1| predicted protein [Populus trichocarpa] gi|222836749|gb|EEE75142.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356558779|ref|XP_003547680.1| PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] Back     alignment and taxonomy information
>gi|356571461|ref|XP_003553895.1| PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] Back     alignment and taxonomy information
>gi|255636503|gb|ACU18590.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|293337865|gb|ADE43176.1| SFBBbeta protein, partial [Malus x domestica] Back     alignment and taxonomy information
>gi|224119700|ref|XP_002318138.1| predicted protein [Populus trichocarpa] gi|222858811|gb|EEE96358.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|197253333|gb|ACH54101.1| SFBB21-beta [Pyrus x bretschneideri] Back     alignment and taxonomy information
>gi|301069172|dbj|BAJ11965.1| MdFBX17 [Malus x domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
TAIR|locus:2135615413 CPR1 "AT4G12560" [Arabidopsis 0.891 0.799 0.251 7.8e-15
TAIR|locus:2090507388 AT3G17490 "AT3G17490" [Arabido 0.818 0.780 0.256 1.2e-13
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.656 0.569 0.228 2.7e-13
TAIR|locus:2090567388 AT3G17530 "AT3G17530" [Arabido 0.894 0.853 0.243 4.8e-13
TAIR|locus:2075790370 AT3G10430 "AT3G10430" [Arabido 0.583 0.583 0.279 6.7e-12
TAIR|locus:2127465402 AT4G22390 "AT4G22390" [Arabido 0.886 0.815 0.223 2.3e-10
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.818 0.832 0.247 3.1e-10
TAIR|locus:2027397363 AT1G11620 "AT1G11620" [Arabido 0.2 0.203 0.368 3.1e-10
TAIR|locus:2162321388 AT5G42460 "AT5G42460" [Arabido 0.905 0.863 0.242 7.9e-10
TAIR|locus:2077903369 AT3G08750 "AT3G08750" [Arabido 0.205 0.205 0.308 9.1e-10
TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 212 (79.7 bits), Expect = 7.8e-15, P = 7.8e-15
 Identities = 96/382 (25%), Positives = 172/382 (45%)

Query:    17 DVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNFIYKHLKR--DNSMRLMIYCTYKNPYD 74
             D++ +   RLP K+L+R R + K  Y L+ DP+FI  HL R       LMI         
Sbjct:     7 DIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMIL-------- 58

Query:    75 TDPFNDLITYFSIFPDKTLTDLHIQDLEPTMK-GNTT---GPYDGIFLLLGDHTHINLWN 130
                    +  +S+  D    D  + D+E  MK G  T   G  +G+  L    T + ++N
Sbjct:    59 ---LRGALRLYSV--DLDSLD-SVSDVEHPMKRGGPTEVFGSSNGLIGLSNSPTDLAVFN 112

Query:   131 VSMDEYRVVPRYKVRLP--CDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEF 188
              S  +   +P   + LP    TR +  +YGLG D V++D+K+V ++    ++       F
Sbjct:   113 PSTRQIHRLPPSSIDLPDGSSTRGYV-FYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSF 171

Query:   189 S-PAAVYNFTTNCWRDLGGFPMS--------RHYRFEGADDVYLNGFCYWVV-HRPDY-- 236
                  V++   N W+ +     S         H  +     V      +WV+  RP    
Sbjct:   172 PYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIA 231

Query:   237 YKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLW 296
             +  I++F +  E F++++ P      N  +  M    +G+ D  L ++ + + ++  D+W
Sbjct:   232 FNLIVRFDLALEEFEIVRFPEAVANGNV-DIQMD---IGVLDGCLCLMCNYDQSY-VDVW 286

Query:   297 IMKGR----SWTKQFTFG-P-FIETY---QPLTFWR-KGEFLLQSSDKRLVLYDSTYEEM 346
             +MK      SWTK FT   P  ++++   +PL + + K + LL+ ++ +LV +D   ++M
Sbjct:   287 MMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKM 346

Query:   347 RDLGITGL--WFSVNILKESLI 366
               L I      +S  ++  SL+
Sbjct:   347 STLRIKDCPSSYSAELVVSSLV 368
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
GO:0031348 "negative regulation of defense response" evidence=IMP
GO:0042177 "negative regulation of protein catabolic process" evidence=IMP
TAIR|locus:2090507 AT3G17490 "AT3G17490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090567 AT3G17530 "AT3G17530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075790 AT3G10430 "AT3G10430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027397 AT1G11620 "AT1G11620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162321 AT5G42460 "AT5G42460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077903 AT3G08750 "AT3G08750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00120932
hypothetical protein (367 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 9e-11
pfam0064648 pfam00646, F-box, F-box domain 7e-09
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 2e-07
pfam1293747 pfam12937, F-box-like, F-box-like 8e-05
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 60.8 bits (148), Expect = 9e-11
 Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 28/190 (14%)

Query: 128 LWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDE 187
           +WN S  + R +P  K R           Y LG DP+   +K   VL   D +      E
Sbjct: 18  VWNPSTGQSRWLPTPKSRRSNKESDT---YFLGYDPIEKQYK---VLCFSDRSGNRNQSE 71

Query: 188 FSPAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHR----PDYYKEILKF 243
                VY   +N WR +   P     +  G   V +NG  Y++ +     PDY+  I+ F
Sbjct: 72  HQ---VYTLGSNSWRTIECSPPHHPLKSRG---VCINGVLYYLAYTLKTNPDYF--IVSF 123

Query: 244 SMTDEVFQV-IQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMK--- 299
            ++ E F+  I  P        Y S      L  Y   L++L  ++  ++FDLW++    
Sbjct: 124 DVSSERFKEFIPLPCGNSDSVDYLS------LINYKGKLAVLKQKKDTNNFDLWVLNDAG 177

Query: 300 GRSWTKQFTF 309
            + W+K FT 
Sbjct: 178 KQEWSKLFTV 187

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 370
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.62
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.61
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.3
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.87
PHA02713557 hypothetical protein; Provisional 98.76
PHA03098534 kelch-like protein; Provisional 98.64
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.63
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.62
PHA02790480 Kelch-like protein; Provisional 98.62
PHA02713557 hypothetical protein; Provisional 98.6
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.57
PLN02153341 epithiospecifier protein 98.51
PLN02193470 nitrile-specifier protein 98.42
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.42
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.39
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.31
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.16
PLN02153341 epithiospecifier protein 98.04
PHA03098534 kelch-like protein; Provisional 97.97
PHA02790480 Kelch-like protein; Provisional 97.9
PLN02193470 nitrile-specifier protein 97.85
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 97.71
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 97.59
KOG4693392 consensus Uncharacterized conserved protein, conta 97.53
KOG1230 521 consensus Protein containing repeated kelch motifs 97.52
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.51
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 97.43
KOG4693392 consensus Uncharacterized conserved protein, conta 97.41
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.53
KOG2997366 consensus F-box protein FBX9 [General function pre 96.35
KOG0281499 consensus Beta-TrCP (transducin repeats containing 95.87
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 95.67
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 95.03
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 94.41
smart00284255 OLF Olfactomedin-like domains. 92.88
KOG1230 521 consensus Protein containing repeated kelch motifs 92.34
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 91.98
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 91.59
COG3055381 Uncharacterized protein conserved in bacteria [Fun 90.92
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 90.87
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 90.58
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 90.36
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 90.28
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 89.16
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 87.72
KOG2055 514 consensus WD40 repeat protein [General function pr 87.61
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 87.39
KOG4341483 consensus F-box protein containing LRR [General fu 87.13
PF1396450 Kelch_6: Kelch motif 86.45
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 83.94
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 82.41
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 80.89
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=4.1e-34  Score=251.14  Aligned_cols=216  Identities=25%  Similarity=0.382  Sum_probs=160.9

Q ss_pred             eeeecceEEEccCCCeeEEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCcCCCCCCC
Q 037087          110 TGPYDGIFLLLGDHTHINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFS  189 (370)
Q Consensus       110 ~~s~nGLl~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~  189 (370)
                      ++|||||||+.....+ +||||+||+++.||+++....   ......++||||+.+++||||++......      ....
T Consensus         1 ~~sCnGLlc~~~~~~~-~V~NP~T~~~~~LP~~~~~~~---~~~~~~~~~G~d~~~~~YKVv~~~~~~~~------~~~~   70 (230)
T TIGR01640         1 VVPCDGLICFSYGKRL-VVWNPSTGQSRWLPTPKSRRS---NKESDTYFLGYDPIEKQYKVLCFSDRSGN------RNQS   70 (230)
T ss_pred             CcccceEEEEecCCcE-EEECCCCCCEEecCCCCCccc---ccccceEEEeecccCCcEEEEEEEeecCC------CCCc
Confidence            4799999999987777 999999999999997654211   11122689999999999999999743111      1357


Q ss_pred             cEEEEEcCCCceecCCCCCCCccccccCCcceEEccEEEEEEeCCC-Cc-cEEEEEECCCccee-EeCCCCCCCcccccc
Q 037087          190 PAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPD-YY-KEILKFSMTDEVFQ-VIQGPNIPQLLNYYE  266 (370)
Q Consensus       190 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~-~~il~fD~~~~~~~-~i~~P~~~~~~~~~~  266 (370)
                      .++||++++++||..... .+..  .....+|++||++||++.... .. ..|++||+++|+|+ .+++|....  . ..
T Consensus        71 ~~~Vys~~~~~Wr~~~~~-~~~~--~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~--~-~~  144 (230)
T TIGR01640        71 EHQVYTLGSNSWRTIECS-PPHH--PLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNS--D-SV  144 (230)
T ss_pred             cEEEEEeCCCCccccccC-CCCc--cccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccc--c-cc
Confidence            899999999999995422 1221  222239999999999987653 22 38999999999999 589887532  1 11


Q ss_pred             ccCCCceEEEECCeEEEEEecCCCceEEEEEecC---CceeEEEEecC--Ccce---eeeeEEeeCCeEEEEeCC--Ce-
Q 037087          267 SAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKG---RSWTKQFTFGP--FIET---YQPLTFWRKGEFLLQSSD--KR-  335 (370)
Q Consensus       267 ~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~---~~W~~~~~i~~--~~~~---~~~~~~~~~~~ll~~~~~--~~-  335 (370)
                      ....   |++++|+||++........++||+|++   ..|+++++|+.  ...+   ..|+++.++|+|++....  +. 
T Consensus       145 ~~~~---L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~  221 (230)
T TIGR01640       145 DYLS---LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFY  221 (230)
T ss_pred             cceE---EEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceE
Confidence            2345   899999999999854445699999997   67999999973  2222   348888899999987553  34 


Q ss_pred             EEEEECCCC
Q 037087          336 LVLYDSTYE  344 (370)
Q Consensus       336 ~~~yd~~~~  344 (370)
                      +++||++++
T Consensus       222 ~~~y~~~~~  230 (230)
T TIGR01640       222 IFYYNVGEN  230 (230)
T ss_pred             EEEEeccCC
Confidence            999999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 2e-06
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 4e-06
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 3e-05
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 3e-04
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 3  RDTTVTTGYGDLSDDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDP 48
          R+      +  L D++++   S L +  L++   VCK WY L  D 
Sbjct: 1  RENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE 46
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.12
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.11
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.99
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.98
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.96
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.95
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.9
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.86
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.78
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.72
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.7
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.69
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.69
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.68
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.65
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.64
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.5
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.47
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.44
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.19
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 98.03
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.66
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.56
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.4
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.37
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.77
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.09
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 94.47
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 94.23
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 93.08
3jrp_A 379 Fusion protein of protein transport protein SEC13 92.29
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 91.08
4e54_B435 DNA damage-binding protein 2; beta barrel, double 90.5
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 89.92
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 89.12
3jro_A 753 Fusion protein of protein transport protein SEC13 89.0
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 88.94
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 88.69
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 87.44
2dg1_A 333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 86.33
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 85.99
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 85.83
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 85.16
3hrp_A 409 Uncharacterized protein; NP_812590.1, structural g 84.35
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 83.82
4e54_B435 DNA damage-binding protein 2; beta barrel, double 83.56
3hfq_A 347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 83.34
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 82.82
3dsm_A 328 Uncharacterized protein bacuni_02894; seven_blated 82.8
3dwl_C 377 Actin-related protein 2/3 complex subunit 1; prope 82.74
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 82.57
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 82.54
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 82.38
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 82.26
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 82.22
3v65_B386 Low-density lipoprotein receptor-related protein; 82.17
3jrp_A 379 Fusion protein of protein transport protein SEC13 80.94
3v64_C349 Agrin; beta propeller, laminin-G, signaling, prote 80.55
3e5z_A 296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 80.41
3g4e_A 297 Regucalcin; six bladed beta-propeller, gluconolcat 80.11
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
Probab=99.12  E-value=1.2e-11  Score=80.77  Aligned_cols=46  Identities=26%  Similarity=0.553  Sum_probs=39.5

Q ss_pred             cccCCCCCcHHHHHHHhccCCccccceeeecccchhhhcCChhhhH
Q 037087            7 VTTGYGDLSDDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNFIY   52 (370)
Q Consensus         7 ~~~~~~~LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~li~~p~F~~   52 (370)
                      ....+..||+|++.+||++||++++.++++|||+|+.++.++.|-+
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~   50 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ   50 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            4556889999999999999999999999999999999999998754
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 370
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 7e-09
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 9e-06
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 1e-05
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 2e-04
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (117), Expect = 7e-09
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 11 YGDLSDDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNF 50
          +  L D++++   S L +  L++   VCK WY L  D + 
Sbjct: 1  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.22
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.62
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.43
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.26
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.24
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.16
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.54
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 96.53
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 90.51
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 87.79
d2ghsa1 295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 86.74
d2dg1a1 319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 85.08
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 82.26
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.2e-12  Score=78.53  Aligned_cols=39  Identities=31%  Similarity=0.668  Sum_probs=36.9

Q ss_pred             CCCcHHHHHHHhccCCccccceeeecccchhhhcCChhh
Q 037087           12 GDLSDDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNF   50 (370)
Q Consensus        12 ~~LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~li~~p~F   50 (370)
                      +.||+|++.+||+.||+++++|+++|||+|+.+++++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            579999999999999999999999999999999998864
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure