Citrus Sinensis ID: 037090

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MSSLQDDHQVMMKPARDEQDFLLAMELASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTIVT
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHccccccEEEEcccccccEEEEEEccccccccccccccccHHHHHHHHccccccccccHHHHHHHHcccHHHHHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHccccccccccHHHHHHHHHcccHHHEEEEEEEcccccEEEEEEEcHHHccccccEccEccHHHHHHHccHHHHHHHccHHHHHHHcccHHHHHHccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHccccccEEEEEcc
Coil and Loop (DISEMBL)
MSSLQDDHQVMMKPARDEQDFLLAMELASGTILPMTIKSAIELDRSVQrlyglapvskyfvpneegvslaptLLIIqdkvnmdswSCVKDALLEGLVPfmkahngmdgfavaaKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTIVT
Flexible Loop (DISEMBL)
msslqddhqvmMKPARDEQDFLLAMELASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGlgenknilltkisiislntivt
Low Complexity Region (SEG)
MSSLQDDHQVMMKPARDEQDFLLAMELASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTIVT
Disordered region (IsUnstruct)
********************FLLAMELASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI**
Disordered Region (DISOPRED)
******************QDFLLAMELASGTILPMTIKS*****RSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTIVT
Disordered Region (DISEMBL)
MSSLQDDHQVMMKPARDEQDFLLAMELASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTIVT
Disordered Region (DISPRO)
*****DDHQVMMKPARDEQDFLLAMELASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTIVT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLQDDHQVMMKPARDEQDFLLAMELASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTIVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	178	2.2.26 [Sep-21-2011]
Q9XGV9	361	Caffeic acid 3-O-methyltr	N/A	no	0.938	0.462	0.383	2e-32
Q8LL87	350	Caffeic acid 3-O-methyltr	N/A	no	0.865	0.44	0.388	3e-32
Q43046	365	Caffeic acid 3-O-methyltr	N/A	no	0.797	0.389	0.496	4e-32
Q9FK25	363	Flavone 3'-O-methyltransf	yes	no	0.842	0.413	0.385	4e-32
Q9SWC2	313	Caffeic acid 3-O-methyltr	N/A	no	0.797	0.453	0.496	5e-32
Q43609	365	Caffeic acid 3-O-methyltr	N/A	no	0.797	0.389	0.489	5e-32
Q8W013	363	Caffeic acid 3-O-methyltr	N/A	no	0.797	0.391	0.489	1e-31
Q00763	365	Caffeic acid 3-O-methyltr	N/A	no	0.797	0.389	0.489	1e-31
Q6T1F5	365	Caffeic acid 3-O-methyltr	N/A	no	0.876	0.427	0.449	5e-31
Q6T1F6	354	Bergaptol O-methyltransfe	N/A	no	0.882	0.443	0.373	6e-31

>sp|Q9XGV9|COMT2_OCIBA Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2 PE=2 SV=1

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 117/227 (51%), Gaps = 60/227 (26%)

Query: 1   MSSLQDDHQVMMKPARDEQDFLLAMELASGTILPMT------------IKSA-------- 40
           MSS  ++ Q+    + +E++FL AM+LAS ++LPM             IK A        
Sbjct: 1   MSSTANNPQIN---SDEEENFLFAMQLASASVLPMVLKSAIELDLLELIKKAGAGAFVSP 57

Query: 41  ---------------IELDR---------------------SVQRLYGLAPVSKYFVPNE 64
                          + LDR                      VQRLYGLAPV K+   NE
Sbjct: 58  AELAAQLLTTNAEAHVMLDRILRLLTSYAILECRLKTLPDGGVQRLYGLAPVCKFLTKNE 117

Query: 65  EGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQ 124
           +GVS+AP  L+ QDKV M+SW  +KDA+L+G +PF KA+ GM  F     D + N +FNQ
Sbjct: 118 DGVSMAPLALMNQDKVLMESWYHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNQ 176

Query: 125 SMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISII 171
            M NH+TI MK+ILETY GF+ L   VDV  G G   N++++K   I
Sbjct: 177 GMSNHSTITMKKILETYTGFDGLKTVVDVGGGTGATLNMIISKYPSI 223

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.
Ocimum basilicum (taxid: 39350)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 8

>sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1

 Score =  137 bits (346), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/211 (38%), Positives = 107/211 (50%), Gaps = 57/211 (27%)

Query: 17  DEQDFLLAMELASGTILPMTIKSA-----------------------------------I 41
           +E+  L AM LAS ++LPM +KSA                                   I
Sbjct: 3   EEEACLFAMSLASASVLPMVLKSAIELDLLELIAKAGPGAYVSPSELAAQLPTHNPEAPI 62

Query: 42  ELDR---------------------SVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKV 80
            LDR                      V+RLYGLAPV K+   N +GVS+AP LL+ QDKV
Sbjct: 63  MLDRILRLLATYSVLDCKLNNLADGGVERLYGLAPVCKFLTKNADGVSMAPLLLMNQDKV 122

Query: 81  NMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILET 140
            M+SW  +KDA+L+G +PF KA+ GM  F     D + N +FNQ M NH+TI MK+ILE 
Sbjct: 123 LMESWYHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEV 181

Query: 141 YKGFERLNQFVDVADGLGENKNILLTKISII 171
           Y+GFE L   VDV  G G   N++++K   I
Sbjct: 182 YRGFEGLKTVVDVGGGTGATLNMIISKYPTI 212

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1

 Score =  137 bits (345), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/145 (49%), Positives = 95/145 (65%), Gaps = 3/145 (2%)

Query: 27  LASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWS 86
           LAS +IL  ++K     D  V+RLYGLAPV K+   NE+GVS++P  L+ QDKV M+SW 
Sbjct: 84  LASYSILTCSLKDLP--DGKVERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVLMESWY 141

Query: 87  CVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFER 146
            +KDA+LEG +PF KA+ GM  F     D + N +FN+ M +H+TI MK+ILETYKGFE 
Sbjct: 142 YLKDAILEGGIPFNKAY-GMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFEG 200

Query: 147 LNQFVDVADGLGENKNILLTKISII 171
           L   VDV  G G   N +++K   I
Sbjct: 201 LTSLVDVGGGTGAVVNTIVSKYPSI 225

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9FK25|OMT1_ARATH Flavone 3'-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1

 Score =  137 bits (344), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 106/205 (51%), Gaps = 55/205 (26%)

Query: 17  DEQDFLLAMELASGTILPMTIKSAIEL--------------------------------- 43
           D++  L AM+LAS ++LPM +KSA+EL                                 
Sbjct: 16  DDEAALFAMQLASASVLPMALKSALELDLLEIMAKNGSPMSPTEIASKLPTKNPEAPVML 75

Query: 44  DR---------------------SVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNM 82
           DR                      V+R+YGL PV KY   NE+GVS+A   L+ QDKV M
Sbjct: 76  DRILRLLTSYSVLTCSNRKLSGDGVERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLM 135

Query: 83  DSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYK 142
           +SW  +KDA+L+G +PF KA+ GM  F     D + N +FN  M NH+TI MK+ILETYK
Sbjct: 136 ESWYHLKDAILDGGIPFNKAY-GMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYK 194

Query: 143 GFERLNQFVDVADGLGENKNILLTK 167
           GFE L   VDV  G+G    ++++K
Sbjct: 195 GFEGLTSLVDVGGGIGATLKMIVSK 219

Methylates OH residues of flavonoid compounds. Substrate preference is quercetin > myricetin >> luteolin. Dihydroquercetin is not a substrate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 6

>sp|Q9SWC2|COMT1_EUCGL Caffeic acid 3-O-methyltransferase (Fragment) OS=Eucalyptus globulus GN=COMT1 PE=3 SV=1

 Score =  137 bits (344), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 72/145 (49%), Positives = 96/145 (66%), Gaps = 3/145 (2%)

Query: 27  LASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWS 86
           LAS ++L  T+    E    V+RLYGLAP+ K+ V NE+GVSLAP  LI QD+V ++SW 
Sbjct: 66  LASYSVLTCTLCDLPE--GKVERLYGLAPLCKFLVKNEDGVSLAPLRLIDQDRVFLESWY 123

Query: 87  CVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFER 146
            +KDA+LEG +PF KAH GM  F     D + N +FN++M +H+TI+MK+ILETY GFE 
Sbjct: 124 YMKDAILEGGIPFHKAH-GMTAFDYPGTDPRFNKIFNRAMSDHSTIMMKKILETYNGFEG 182

Query: 147 LNQFVDVADGLGENKNILLTKISII 171
           L   VDV  G G   N+++ K   I
Sbjct: 183 LKTVVDVGGGTGAILNMIVAKYPSI 207

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Eucalyptus globulus (taxid: 34317)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1

 Score =  137 bits (344), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 71/145 (48%), Positives = 96/145 (66%), Gaps = 3/145 (2%)

Query: 27  LASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWS 86
           LAS +IL  ++++    D  V+RLYGL PV K+   NEEGVS+AP  L+ QDKV ++SW 
Sbjct: 84  LASYSILTYSLRTLA--DGKVERLYGLGPVCKFLTKNEEGVSIAPLCLMNQDKVLLESWY 141

Query: 87  CVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFER 146
            +KDA+LEG +PF KA+ GM  F     D + N +FN+ M +H+TI MK+ILETYKGFE 
Sbjct: 142 HLKDAVLEGGIPFNKAY-GMTAFEYHGTDPRFNKVFNRGMADHSTITMKKILETYKGFEG 200

Query: 147 LNQFVDVADGLGENKNILLTKISII 171
           L   VDV  G G   N++++K   I
Sbjct: 201 LTSVVDVGGGTGAVLNMIVSKYPSI 225

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Prunus dulcis (taxid: 3755)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q8W013|COMT1_CATRO Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/145 (48%), Positives = 96/145 (66%), Gaps = 3/145 (2%)

Query: 27  LASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWS 86
           LAS ++L  T+K     D  ++RLY LAPV K+   NE+GVS+A  LL+ QDKV M+SW 
Sbjct: 84  LASYSVLNCTLKDLP--DGGIERLYSLAPVCKFLTKNEDGVSMAALLLMNQDKVLMESWY 141

Query: 87  CVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFER 146
            +KDA+LEG +PF KA+ GM  F    KD + N +FNQ M NH+TI+MK+ILE Y+GF+ 
Sbjct: 142 HLKDAVLEGGIPFNKAY-GMTAFEYHGKDPRFNKVFNQGMSNHSTIIMKKILEIYQGFQG 200

Query: 147 LNQFVDVADGLGENKNILLTKISII 171
           L   VDV  G G   N++++K   I
Sbjct: 201 LKTVVDVGGGTGATLNMIVSKYPSI 225

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Catharanthus roseus (taxid: 4058)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/145 (48%), Positives = 95/145 (65%), Gaps = 3/145 (2%)

Query: 27  LASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWS 86
           LAS +IL  ++K     D  V+RLYGLAPV K+   NE+GVS++P  L+ QDKV M+SW 
Sbjct: 84  LASYSILTCSLKDLP--DGKVERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVLMESWY 141

Query: 87  CVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFER 146
            +KDA+L+G +PF KA+ GM  F     D + N +FN+ M +H+TI MK+ILETYKGFE 
Sbjct: 142 YLKDAILDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFEG 200

Query: 147 LNQFVDVADGLGENKNILLTKISII 171
           L   VDV  G G   N +++K   I
Sbjct: 201 LTSLVDVGGGTGAVVNTIVSKYPSI 225

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q6T1F5|COMT1_AMMMJ Caffeic acid 3-O-methyltransferase OS=Ammi majus GN=COMT PE=1 SV=1

 Score =  133 bits (335), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 104/167 (62%), Gaps = 11/167 (6%)

Query: 1   MSSLQDDHQVMMKPARDEQDFLLAMELASGTILPMTIKSAIELDRSVQRLYGLAPVSKYF 60
           + S Q D  VM+       D +L + LAS ++L   ++     D  V+RLYGLAPV K+ 
Sbjct: 68  LPSSQPDTPVML-------DRILRL-LASYSVLNCKLRDLP--DARVERLYGLAPVCKFL 117

Query: 61  VPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINN 120
             N +GVS+AP LL+ QDK+ M+SW  +KDA+L+G +PF KA+ GM  F    KD + N 
Sbjct: 118 TKNSDGVSMAPLLLMNQDKILMESWYHLKDAVLDGGIPFNKAY-GMTAFEYHGKDPRFNK 176

Query: 121 LFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTK 167
           +FNQ M NH+TI MK+IL+TY GF  L   VDV  G G   N++++K
Sbjct: 177 VFNQGMSNHSTITMKKILQTYDGFGGLKTVVDVGGGTGATLNMIISK 223

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Ammi majus (taxid: 48026)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q6T1F6|BMT_AMMMJ Bergaptol O-methyltransferase OS=Ammi majus GN=BMT PE=1 SV=1

 Score =  133 bits (334), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 106/209 (50%), Gaps = 52/209 (24%)

Query: 14  PARDEQDFLLAMELASGTILPMTIKSAIELD----------------------------- 44
           P++DE+  ++AM+LA+ T+LPM +KSAIELD                             
Sbjct: 8   PSQDEEAGVVAMQLATSTVLPMILKSAIELDLLNTIAKAGPGNYLSPSDLASKLLLSNPD 67

Query: 45  ----------------------RSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNM 82
                                   V+ LY   PV KY   NE+G S+AP LL+ QDKV +
Sbjct: 68  APVMLARILRVLATYKVLGCKRGEVEWLYCWTPVCKYLSNNEDGASIAPILLVHQDKVTI 127

Query: 83  DSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYK 142
            SW  + DA+ +G   F KAH+ M  F  A++D + N  FN+SM  H+TI MK+ILETYK
Sbjct: 128 KSWYHLTDAVRDGGTAFNKAHD-MSIFEYASQDPQFNKAFNRSMRGHSTITMKKILETYK 186

Query: 143 GFERLNQFVDVADGLGENKNILLTKISII 171
           GFE L   VDV  G G   N++++K   I
Sbjct: 187 GFEGLKSIVDVGGGTGATLNMIISKYPTI 215

Ammi majus (taxid: 48026)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
345651711	364	caffeic acid O-methyltransferase [Salvia	0.955	0.467	0.374	4e-32
345651709	364	caffeic acid O-methyltransferase [Salvia	0.955	0.467	0.374	4e-32
338899427	355	caffeic acid O-methylltransferase [Chrys	0.848	0.425	0.395	9e-32
449438857	359	PREDICTED: caffeic acid 3-O-methyltransf	0.797	0.395	0.510	1e-31
449483224	359	PREDICTED: caffeic acid 3-O-methyltransf	0.797	0.395	0.510	1e-31
302171551	366	putative caffeic acid O-methyltransferas	0.955	0.464	0.378	2e-31
312283309	364	unnamed protein product [Thellungiella h	0.842	0.412	0.398	2e-31
154091348	365	caffeic acid O-methyl transferase [Leuca	0.915	0.446	0.386	2e-31
4808530	362	O-methyltransferase [Thalictrum tuberosu	0.921	0.453	0.376	3e-31
56605372	364	caffeate O-methyltransferase [Picea abie	0.870	0.425	0.372	3e-31

>gi|345651711|gb|AEO14871.1| caffeic acid O-methyltransferase [Salvia miltiorrhiza]

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 116/227 (51%), Gaps = 57/227 (25%)

Query: 1   MSSLQDDHQVMMKPARDEQDFLLAMELASGTILPMTIKS--------------------- 39
           M S   + Q     + +E+ FL AM+LAS ++LPM +KS                     
Sbjct: 1   MGSTTKNPQTAAVNSDEEESFLFAMQLASASVLPMVLKSAIELDLLEIIKKAGAGAFVSP 60

Query: 40  --------------AIELDR---------------------SVQRLYGLAPVSKYFVPNE 64
                         A+ LDR                      VQRLYGLAPV K+   N+
Sbjct: 61  AEVAAQLPTTNEGAAVMLDRILRLLASYAILECRLKTLPDGGVQRLYGLAPVCKFLTKND 120

Query: 65  EGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQ 124
           +GVS+AP  L+ QDKV M+SW  +KDA+L+G +PF KA+ GM  F     D + N +FNQ
Sbjct: 121 DGVSVAPLALMNQDKVLMESWYHLKDAVLDGEIPFNKAY-GMSAFEYHGTDPRFNKVFNQ 179

Query: 125 SMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISII 171
            M  H+TI MK+ILETYKGF+ LN  VDV  G+G   +++++K   I
Sbjct: 180 GMSGHSTITMKKILETYKGFDGLNSVVDVGGGIGATLHMIVSKYPSI 226

Source: Salvia miltiorrhiza

Species: Salvia miltiorrhiza

Genus: Salvia

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345651709|gb|AEO14870.1| caffeic acid O-methyltransferase [Salvia miltiorrhiza]

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 116/227 (51%), Gaps = 57/227 (25%)

Query: 1   MSSLQDDHQVMMKPARDEQDFLLAMELASGTILPMTIKS--------------------- 39
           M S   + Q     + +E+ FL AM+LAS ++LPM +KS                     
Sbjct: 1   MGSTTKNPQTAAVNSDEEESFLFAMQLASASVLPMVLKSAIELDLLEIIKKAGAGAFVSP 60

Query: 40  --------------AIELDR---------------------SVQRLYGLAPVSKYFVPNE 64
                         A+ LDR                      VQRLYGLAPV K+   N+
Sbjct: 61  AEVAAQLPTTNEGAAVMLDRILRLLASYAILECRLKTLPDGGVQRLYGLAPVCKFLTKND 120

Query: 65  EGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQ 124
           +GVS+AP  L+ QDKV M+SW  +KDA+L+G +PF KA+ GM  F     D + N +FNQ
Sbjct: 121 DGVSVAPLALMNQDKVLMESWYHLKDAVLDGEIPFNKAY-GMSAFEYHGTDPRFNKVFNQ 179

Query: 125 SMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISII 171
            M  H+TI MK+ILETYKGF+ LN  VDV  G+G   +++++K   I
Sbjct: 180 GMSGHSTITMKKILETYKGFDGLNSVVDVGGGIGATLHMIVSKYPSI 226

Source: Salvia miltiorrhiza

Species: Salvia miltiorrhiza

Genus: Salvia

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|338899427|dbj|BAK42963.1| caffeic acid O-methylltransferase [Chrysanthemum x morifolium]

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 81/205 (39%), Positives = 111/205 (54%), Gaps = 54/205 (26%)

Query: 16  RDEQDFLLAMELASGTILPMTIKSAIEL-------------------------------- 43
           +DE+ FL AM+LAS ++LPM +KSAIEL                                
Sbjct: 10  KDEEAFLFAMQLASASVLPMVLKSAIELDLLEIIAKAGPGAYVSPTELAAQLPKVENPEA 69

Query: 44  ----DR-----------------SVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNM 82
               DR                   +RLYGLAPV KY V NE+GVS AP LL+ QDK+ M
Sbjct: 70  PVMLDRICRLLASYSVLTCKLNDQSERLYGLAPVCKYLVKNEDGVSNAPLLLMNQDKILM 129

Query: 83  DSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYK 142
           +SW  +KDA+L+G +PF KA+ GM  F     D++ N +FN  M NH+T+ MK+IL+ Y 
Sbjct: 130 ESWYHLKDAVLDGGIPFNKAY-GMTAFEYHGTDDRFNKVFNSGMFNHSTMTMKKILDIYD 188

Query: 143 GFERLNQFVDVADGLGENKNILLTK 167
           GF+ L+  VDV  G G + N++++K
Sbjct: 189 GFDNLSTLVDVGGGTGASLNMIVSK 213

Source: Chrysanthemum x morifolium

Species: Chrysanthemum x morifolium

Genus: Chrysanthemum

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438857|ref|XP_004137204.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Cucumis sativus]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/145 (51%), Positives = 98/145 (67%), Gaps = 3/145 (2%)

Query: 27  LASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWS 86
           LAS +IL  ++      D SVQRLYGLAPVSK+ + N +GVS+AP  L+ QDKV M+SW 
Sbjct: 78  LASYSILTCSLDPLP--DGSVQRLYGLAPVSKFLIKNHDGVSIAPLCLMNQDKVLMESWY 135

Query: 87  CVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFER 146
            +KDA+LEG +PF +A+ GM  F     D + N +FN+ M +H+TI MK+ILETYKGFE 
Sbjct: 136 HLKDAVLEGGIPFNRAY-GMSAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFEG 194

Query: 147 LNQFVDVADGLGENKNILLTKISII 171
           LN  VDV  G G   N++++K   I
Sbjct: 195 LNSVVDVGGGTGAVLNMIVSKYPSI 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483224|ref|XP_004156527.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Cucumis sativus]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/145 (51%), Positives = 98/145 (67%), Gaps = 3/145 (2%)

Query: 27  LASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWS 86
           LAS +IL  ++      D SVQRLYGLAPVSK+ + N +GVS+AP  L+ QDKV M+SW 
Sbjct: 78  LASYSILTCSLDPLP--DGSVQRLYGLAPVSKFLIKNHDGVSIAPLCLMNQDKVLMESWY 135

Query: 87  CVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFER 146
            +KDA+LEG +PF +A+ GM  F     D + N +FN+ M +H+TI MK+ILETYKGFE 
Sbjct: 136 HLKDAVLEGGIPFNRAY-GMSAFEYHGTDPRFNKVFNKRMSDHSTITMKKILETYKGFEG 194

Query: 147 LNQFVDVADGLGENKNILLTKISII 171
           LN  VDV  G G   N++++K   I
Sbjct: 195 LNSVVDVGGGTGAVLNMIVSKYPSI 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302171551|gb|ADK97702.1| putative caffeic acid O-methyltransferase [Citrus aurantium]

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 115/227 (50%), Gaps = 57/227 (25%)

Query: 1   MSSLQDDHQVMMKPARDEQDFLLAMELASGTILPMTIKSA-------------------- 40
           M S   + Q+      DE+  LLAM+L S ++LPM +KSA                    
Sbjct: 1   MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60

Query: 41  ---------------IELDR---------------------SVQRLYGLAPVSKYFVPNE 64
                          I LDR                      V+RLYGLAPV K+   NE
Sbjct: 61  KDIASQLPTKNPDAHIVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120

Query: 65  EGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQ 124
           +GV+L+   L+ QDKV M+SW  +KDA+LEG +PF KA+ GM+ F    KD + N +FN 
Sbjct: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAY-GMNAFDYHGKDLRFNKIFNN 179

Query: 125 SMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISII 171
            M +H+TI MK+ILE YKGFE LN  VDV  G+G   N++++K   I
Sbjct: 180 GMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSI 226

Source: Citrus aurantium

Species: Citrus aurantium

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283309|dbj|BAJ34520.1| unnamed protein product [Thellungiella halophila]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/206 (39%), Positives = 107/206 (51%), Gaps = 56/206 (27%)

Query: 17  DEQDFLLAMELASGTILPMTIKSAIEL--------------------------------- 43
           D++  L AM+LAS ++LPM +KSA+EL                                 
Sbjct: 16  DDEAALFAMQLASASVLPMALKSALELDLLEIMAKNTKPMSPSEIASHLPTKNPEAPVML 75

Query: 44  DR----------------------SVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVN 81
           DR                       V+RLYGL PV KY   NE+GVS+A   L+ QDKV 
Sbjct: 76  DRILRLLTAYSVLTCSNRTLPNGDGVERLYGLGPVCKYLTKNEDGVSIAALCLMNQDKVL 135

Query: 82  MDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETY 141
           M+SW  +KDA+L+G +PF KA+ GM  F    KD + N +FN  M NH+TI MK+ILETY
Sbjct: 136 MESWYHLKDAILDGGIPFNKAY-GMSAFEYHGKDLRFNTVFNNGMSNHSTITMKKILETY 194

Query: 142 KGFERLNQFVDVADGLGENKNILLTK 167
           KGFE L   VDV  G+G    ++L+K
Sbjct: 195 KGFEGLTSLVDVGGGIGATLKMILSK 220

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|154091348|gb|ABS57468.1| caffeic acid O-methyl transferase [Leucaena leucocephala] gi|155966780|gb|ABU41320.1| caffeic acid o-methyl transferase [Leucaena leucocephala]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/220 (38%), Positives = 115/220 (52%), Gaps = 57/220 (25%)

Query: 9   QVMMKPARDEQDFLLAMELASGTILPMTIKS----------------------------- 39
           Q++     DE+  L AM+LAS ++LPM +KS                             
Sbjct: 8   QIIPTHVNDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPNAQLSPSNIAAQLP 67

Query: 40  ------AIELDR---------------------SVQRLYGLAPVSKYFVPNEEGVSLAPT 72
                 A+ LDR                      ++RLYGLAPV+KY V NE+GVS+AP 
Sbjct: 68  TKNPDAAVMLDRMMRLLACYNVLSCSVRTLPDGKIERLYGLAPVAKYLVKNEDGVSIAPL 127

Query: 73  LLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTI 132
            L+ QDKV M+SW  +KDA+LEG +PF KAH GM  F    KD + N +FN+ M +H+TI
Sbjct: 128 NLMNQDKVLMESWYYLKDAVLEGGIPFNKAH-GMTSFEYHGKDLRFNKVFNKGMADHSTI 186

Query: 133 VMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIIS 172
            MK+ILETY GFE L   VDV  G G   +++++K   I+
Sbjct: 187 TMKKILETYTGFEGLTSLVDVGGGTGAVISMIVSKYPSIN 226

Source: Leucaena leucocephala

Species: Leucaena leucocephala

Genus: Leucaena

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4808530|gb|AAD29845.1|AF064697_1 O-methyltransferase [Thalictrum tuberosum]

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 116/223 (52%), Gaps = 59/223 (26%)

Query: 1   MSSLQDDHQVMMKPARDEQDFLLAMELASGTILPMTIK---------------------- 38
           M S Q++H   + P  +E+  L AM+LAS ++LPM +K                      
Sbjct: 1   MGSTQNNHN--LTPEEEEEACLHAMQLASASVLPMVLKAAIELDVLEIIAKAGQGAYVAP 58

Query: 39  -------------SAIELDR---------------------SVQRLYGLAPVSKYFVPNE 64
                        + I LDR                      V+RLYGLAPV K+ V NE
Sbjct: 59  SEIASQLSTSNSQAPIILDRILRLLASYKVLTCNLRTLEDGGVERLYGLAPVCKFLVKNE 118

Query: 65  EGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQ 124
           +GVS+AP +L+ QDKV M+SW  +KDA+L+G +PF KA+ GM  F     D + N +FN+
Sbjct: 119 DGVSMAPLVLMNQDKVLMESWYHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNR 177

Query: 125 SMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTK 167
            M +H+TI MK++LE YKGFE L   VDV  G G   N+++TK
Sbjct: 178 GMSDHSTITMKKLLELYKGFEGLKSVVDVGGGTGATVNMIVTK 220

Source: Thalictrum tuberosum

Species: Thalictrum tuberosum

Genus: Thalictrum

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56605372|emb|CAI30878.1| caffeate O-methyltransferase [Picea abies] gi|116785470|gb|ABK23738.1| unknown [Picea sitchensis]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 57/212 (26%)

Query: 17  DEQDFLLAMELASGTILPMTIKSAIE---------------------------------- 42
           +E ++LL MEL + + LPM +K+AIE                                  
Sbjct: 16  NEDEWLLGMELGNFSCLPMGMKAAIELDVLQIIANAGNGVQLSPRQIVAHIPTTNPDAAI 75

Query: 43  -LDR---------------------SVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKV 80
            LDR                       +RLYGL P+ KY V N++GVSLAP +L+ QDKV
Sbjct: 76  TLDRILRVLASHSVLSCSVTTDENGKAERLYGLTPLCKYLVKNQDGVSLAPLVLMNQDKV 135

Query: 81  NMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILET 140
            MDSW  +KDA+LEG  PF KAH GM+ F   AKD++ N +FN+ M  H+T++M +IL+T
Sbjct: 136 LMDSWYYLKDAVLEGSQPFTKAH-GMNAFEYPAKDQRFNRVFNRGMSEHSTMLMNKILDT 194

Query: 141 YKGFERLNQFVDVADGLGENKNILLTKISIIS 172
           Y+GF+ + + VDV  G+G   N+++++   IS
Sbjct: 195 YQGFKEVQELVDVGGGVGSTLNLIVSRYPHIS 226

Source: Picea abies

Species: Picea abies

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.674	0.330	0.512	5.7e-36
UNIPROTKB|Q84N28	360	OMT1 "Flavone O-methyltransfer	0.786	0.388	0.444	3.2e-26
UNIPROTKB|Q6ZD89	368	ROMT-9 "Flavone 3'-O-methyltra	0.786	0.380	0.409	5.3e-24
TAIR|locus:2038026	352	AT1G33030 [Arabidopsis thalian	0.657	0.332	0.378	3.9e-22
TAIR|locus:2015223	381	AT1G63140 [Arabidopsis thalian	0.814	0.380	0.368	7.7e-20
UNIPROTKB|A8QW52	376	EOMT "Eugenol O-methyltransfer	0.691	0.327	0.346	3.7e-19
TAIR|locus:2204695	381	AT1G77530 [Arabidopsis thalian	0.865	0.404	0.335	4.9e-19
TAIR|locus:2204680	381	AT1G77520 [Arabidopsis thalian	0.865	0.404	0.341	2.4e-18
TAIR|locus:2034016	363	AT1G51990 [Arabidopsis thalian	0.668	0.327	0.411	1.2e-17
UNIPROTKB|P93324	372	P93324 "Isoliquiritigenin 2'-O	0.837	0.400	0.335	1.4e-16

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
 Identities = 62/121 (51%), Positives = 82/121 (67%)

Query:    47 VQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGM 106
             V+R+YGL PV KY   NE+GVS+A   L+ QDKV M+SW  +KDA+L+G +PF KA+ GM
Sbjct:   100 VERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESWYHLKDAILDGGIPFNKAY-GM 158

Query:   107 DGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLT 166
               F     D + N +FN  M NH+TI MK+ILETYKGFE L   VDV  G+G    ++++
Sbjct:   159 SAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVS 218

Query:   167 K 167
             K
Sbjct:   219 K 219

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 64/144 (44%), Positives = 89/144 (61%)

Query:    15 ARDEQDFLLAMELASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLL 74
             A D  D +L + LAS  ++  T++     D  + R Y  APV K+  PNE+GVS+A   L
Sbjct:    70 AADMVDRMLRL-LASYNVVSCTMEEG--KDGRLSRRYRAAPVCKFLTPNEDGVSMAALAL 126

Query:    75 IIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVM 134
             + QDKV M+SW  +KDA+L+G +PF KA+ GM  F     D + N +FN+ M NH+ I+ 
Sbjct:   127 MNQDKVLMESWYYLKDAVLDGGIPFNKAY-GMSAFEYHGTDPRFNRVFNEGMKNHSIIIT 185

Query:   135 KEILETYKGFERLNQFVDVADGLG 158
             K++LE YKGFE L   VDV  G+G
Sbjct:   186 KKLLEVYKGFEGLGTIVDVGGGVG 209

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 59/144 (40%), Positives = 87/144 (60%)

Query:    15 ARDEQDFLLAMELASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLL 74
             A D  D +L + LAS  ++   ++     D  + R Y  APV K+  PNE+GVS+A   L
Sbjct:    77 AADMVDRMLRL-LASYNVVRCEMEEGA--DGKLSRRYAAAPVCKWLTPNEDGVSMAALAL 133

Query:    75 IIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVM 134
             + QDKV M+SW  +KDA+L+G +PF KA+ GM  F     D + N +FN+ M NH+ I+ 
Sbjct:   134 MNQDKVLMESWYYLKDAVLDGGIPFNKAY-GMTAFEYHGTDARFNRVFNEGMKNHSVIIT 192

Query:   135 KEILETYKGFERLNQFVDVADGLG 158
             K++L+ Y GF+  +  VDV  G+G
Sbjct:   193 KKLLDLYTGFDAASTVVDVGGGVG 216

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
 Identities = 45/119 (37%), Positives = 67/119 (56%)

Query:    50 LYGLAPVSKYFVPNEEGV-SLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDG 108
             +YGLAPV+KYF  N+ G  SLAP + + QDKV  D W  +KD++LEG +PF   H G   
Sbjct:    90 IYGLAPVAKYFTKNQNGGGSLAPMVNLFQDKVVTDMWYNLKDSVLEGGLPFNNTH-GSSA 148

Query:   109 FAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTK 167
               +   D +   +F  SM     + ++E L+ Y GF+ +   VDV  G G   + +++K
Sbjct:   149 VELVGSDSRFREVFQSSMKGFNEVFIEEFLKNYNGFDGVKSLVDVGGGDGSLLSRIISK 207

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

TAIR|locus:2015223 AT1G63140 [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 7.7e-20, P = 7.7e-20
 Identities = 56/152 (36%), Positives = 87/152 (57%)

Query:    13 KPARDEQDFLL---AMELASGTILPM-TIKSAIEL-DRSVQRLYGLAPVSKYFVPNEEGV 67
             KP   E   LL    + LAS +IL   T+++   +  R  +R+Y   PV  +F+   +G+
Sbjct:    79 KPTNPEAPVLLDRMLVLLASHSILKYRTVETGDNIGSRKTERVYAAEPVCTFFLNRGDGL 138

Query:    68 -SLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSM 126
              SLA   +++Q +V M  W  +KD +LEG   F  AH GM  F +   +E+   +FN++M
Sbjct:   139 GSLATLFMVLQGEVCMKPWEHLKDMILEGKDAFTSAH-GMRFFELIGSNEQFAEMFNRAM 197

Query:   127 HNHTTIVMKEILETYKGFERLNQFVDVADGLG 158
                +T++MK++LE YKGFE +N  VDV  G+G
Sbjct:   198 SEASTLIMKKVLEVYKGFEDVNTLVDVGGGIG 229

GO:0005737 "cytoplasm" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|A8QW52 EOMT "Eugenol O-methyltransferase" [Sorghum bicolor (taxid:4558)]

 Score = 196 (74.1 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
 Identities = 43/124 (34%), Positives = 66/124 (53%)

Query:    49 RLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDG 108
             R Y  APV K+F       S+ P    +    NM++W  +KD +L G  PF KA+ GM  
Sbjct:   115 RRYAAAPVCKWFARGGGVESVVPMGFWMTSTTNMETWHNIKDGVLAGETPFDKAY-GMPV 173

Query:   109 FAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKI 168
             F     +  +N LFN++M +H+ I+ K +LE ++GFE  +  VDV  G G    ++ ++ 
Sbjct:   174 FEYLGANGTMNTLFNEAMASHSMIITKRLLEVFRGFENYSVLVDVGGGNGTTMQMIRSQY 233

Query:   169 SIIS 172
               IS
Sbjct:   234 ENIS 237

GO:0008171 "O-methyltransferase activity" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 4.9e-19, P = 4.9e-19
 Identities = 54/161 (33%), Positives = 93/161 (57%)

Query:    13 KPARDEQDFLLAMEL---ASGTILPMTIKSAIELDRS--VQRLYGLAPVSKYFVPNEEGV 67
             KP   E   LL   L    S +IL   +  + E  ++  ++R+Y   P+ KYF+ + +G 
Sbjct:    79 KPTNPEAPVLLDRMLRLLVSHSILKCCMVESRENGQTGKIERVYAAEPICKYFLKDSDGS 138

Query:    68 -SLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSM 126
              SL+  LL++  +V + +W+ +KD +LEG   F  AH+ M  F   + D++ + LF+++M
Sbjct:   139 GSLSSLLLLLHSQVILKTWTNLKDVILEGKDAFSSAHD-MRLFEYISSDDQFSKLFHRAM 197

Query:   127 HNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTK 167
                +T+VMK++LE Y+GFE +N  VDV  G+G    ++ +K
Sbjct:   198 SESSTMVMKKVLEEYRGFEDVNTLVDVGGGIGTILGLITSK 238

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 55/161 (34%), Positives = 87/161 (54%)

Query:    13 KPARDEQDFLLAMELA---SGTILPMTIKSAIELDRS--VQRLYGLAPVSKYFVPNEEGV 67
             KP   E   LL   L+   S +IL   +    E  R+  ++R+Y   PV KYF+ + +G 
Sbjct:    79 KPTNPEAPVLLDRMLSLLVSHSILKCRMIETGENGRTGKIERVYAAEPVCKYFLRDSDGT 138

Query:    68 -SLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSM 126
              SL P  +++  +V   +W+ +KD +LEG   F  AH GM  F     D+    LFN++M
Sbjct:   139 GSLVPLFMLLHTQVFFKTWTNLKDVILEGRDAFNSAH-GMKIFEYINSDQPFAELFNRAM 197

Query:   127 HNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTK 167
                +T++MK++L+ Y+GFE +N  VDV  G G    ++ +K
Sbjct:   198 SEPSTMIMKKVLDVYRGFEDVNTLVDVGGGNGTVLGLVTSK 238

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 49/119 (41%), Positives = 68/119 (57%)

Query:    49 RLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDG 108
             R YGL  V K  + +E+G S+AP +L    K     WS + +A+ EG     +  N    
Sbjct:   101 RAYGLGKVGKKLIKDEDGFSIAPYVLAGCTKAKGGVWSYLTEAIQEGGASAWERANEALI 160

Query:   109 FAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTK 167
             F    K+E +  +FN+SM NHT+IVMK+ILE Y GFE ++ FVDV   LG N   +L+K
Sbjct:   161 FEYMKKNENLKKIFNESMTNHTSIVMKKILENYIGFEGVSDFVDVGGSLGSNLAQILSK 219

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|P93324 P93324 "Isoliquiritigenin 2'-O-methyltransferase" [Medicago sativa (taxid:3879)]

 Score = 209 (78.6 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 51/152 (33%), Positives = 84/152 (55%)

Query:    20 DFLLAMELASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDK 79
             D +L + LAS ++L  T ++ IE D   +R+YGL+ V KY VP+E    LA     +   
Sbjct:    86 DRMLRL-LASYSVLTSTTRT-IE-DGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYP 142

Query:    80 VNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILE 139
               +  W   K+A+++  +   K  +G+  +    KD+K+N +FN+SM +     MK +LE
Sbjct:   143 ALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLE 202

Query:   140 TYKGFERLNQFVDVADGLGENKNILLTKISII 171
              Y GFE ++  VDV  G G N  ++++K  +I
Sbjct:   203 IYTGFEGISTLVDVGGGSGRNLELIISKYPLI 234

GO:0030751 "licodione 2'-O-methyltransferase activity" evidence=IDA

GO:0033802 "isoliquiritigenin 2'-O-methyltransferase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.8__1313__AT5G54160.1 annotation not avaliable (363 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	178
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	3e-31

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  112 bits (282), Expect = 3e-31
 Identities = 48/111 (43%), Positives = 64/111 (57%), Gaps = 1/111 (0%)

Query: 48  QRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMD 107
              YGL P SK  V  E+  SLAP LL+  D   ++SW+ +KDA+ EG  PF +A  GM 
Sbjct: 4   GEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGPPFERAF-GMP 62

Query: 108 GFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLG 158
            F     D + N +FN++M  H+ +VMK+ILET   F  L+  VDV  G G
Sbjct: 63  FFEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTG 113

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.93
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.85
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.54
PRK06922	677	hypothetical protein; Provisional	97.82
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	97.33
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.28
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.1
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	97.03
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	96.91
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	96.86
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	96.78
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	96.77
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.43
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.39
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	96.26
PRK07402	196	precorrin-6B methylase; Provisional	96.24
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	96.2
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	96.09
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	96.07
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	96.03
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	96.02
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	95.99
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	95.98
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	95.96
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	95.94
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	95.93
PRK10258	251	biotin biosynthesis protein BioC; Provisional	95.81
PRK11207	197	tellurite resistance protein TehB; Provisional	95.8
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	95.76
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	95.69
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	95.69
PRK04457	262	spermidine synthase; Provisional	95.58
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	95.57
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	95.56
PF13679	141	Methyltransf_32: Methyltransferase domain	95.52
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	95.43
PRK06202	232	hypothetical protein; Provisional	95.42
TIGR00438	188	rrmJ cell division protein FtsJ.	95.41
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	95.39
TIGR00740	239	methyltransferase, putative. A simple BLAST search	95.35
COG4123	248	Predicted O-methyltransferase [General function pr	95.18
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	95.17
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	95.13
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	95.08
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	95.05
PLN02244	340	tocopherol O-methyltransferase	95.01
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	95.0
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	94.99
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	94.97
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	94.95
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	94.9
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	94.86
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	94.8
PRK04266	226	fibrillarin; Provisional	94.69
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	94.62
TIGR00452	314	methyltransferase, putative. Known examples to dat	94.62
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.6
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	94.5
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	94.47
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	94.46
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	94.43
PLN02336	475	phosphoethanolamine N-methyltransferase	94.37
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	94.36
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	94.32
KOG3115	249	consensus Methyltransferase-like protein [General	94.26
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	94.13
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	94.09
COG2890	280	HemK Methylase of polypeptide chain release factor	94.09
PLN02336	475	phosphoethanolamine N-methyltransferase	94.0
PLN02490	340	MPBQ/MSBQ methyltransferase	93.97
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	93.89
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	93.84
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	93.76
PRK12335	287	tellurite resistance protein TehB; Provisional	93.71
PLN02233	261	ubiquinone biosynthesis methyltransferase	93.68
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	93.59
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	93.5
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	93.47
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	93.4
PRK05785	226	hypothetical protein; Provisional	93.32
PLN02366	308	spermidine synthase	93.13
TIGR03438	301	probable methyltransferase. This model represents	93.07
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	93.02
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	93.0
KOG2904	328	consensus Predicted methyltransferase [General fun	92.98
PRK00811	283	spermidine synthase; Provisional	92.57
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	92.49
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	92.46
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	92.38
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	92.37
PHA03411	279	putative methyltransferase; Provisional	92.33
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	92.08
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	92.04
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	91.88
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	91.8
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	91.8
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	91.74
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	91.56
PRK14967	223	putative methyltransferase; Provisional	91.41
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	91.37
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	91.33
PLN02585	315	magnesium protoporphyrin IX methyltransferase	90.92
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	90.64
PRK01581	374	speE spermidine synthase; Validated	90.44
PLN02672	1082	methionine S-methyltransferase	90.25
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	90.24
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	90.18
KOG1271	227	consensus Methyltransferases [General function pre	90.07
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	90.05
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	89.86
PHA03412	241	putative methyltransferase; Provisional	89.81
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	89.72
KOG3010	261	consensus Methyltransferase [General function pred	89.59
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	89.52
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	89.43
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	89.22
PRK10901	427	16S rRNA methyltransferase B; Provisional	88.91
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	88.68
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	88.66
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	88.61
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	88.44
PRK04148	134	hypothetical protein; Provisional	87.72
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	87.64
PRK14902	444	16S rRNA methyltransferase B; Provisional	87.45
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	87.29
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	87.19
PRK13255	218	thiopurine S-methyltransferase; Reviewed	86.97
PLN03075	296	nicotianamine synthase; Provisional	86.73
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	86.73
PRK03612	521	spermidine synthase; Provisional	86.63
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	86.36
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	86.16
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	86.14
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	86.01
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	85.92
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	85.65
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	85.25
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	85.14
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	84.84
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	84.68
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	84.6
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	84.34
KOG2899	288	consensus Predicted methyltransferase [General fun	84.19
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	83.1
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	82.85
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	82.14
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	82.14
PTZ00146	293	fibrillarin; Provisional	81.2

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.93  E-value=2.1e-25  Score=175.77  Aligned_cols=129  Identities=22%  Similarity=0.351  Sum_probs=114.0

Q ss_pred             CCCCceecchhccccCCCCCCCChHHHHHHhcChhhhhhhhhHHHHHhcCCcchhhhccCCchhhhhccChHHHHHHHHH
Q 037090           46 SVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQS  125 (178)
Q Consensus        46 ~~~~~y~~t~~s~~L~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~p~~~~~F~~~  125 (178)
                      |++++|+||++|+.|+.+++..++..++.+...+..+++|.+|.+++++|.++|+.++ |.++|+|+.++|+..+.|+.+
T Consensus         1 ~~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~-g~~~~~~~~~~~~~~~~f~~~   79 (241)
T PF00891_consen    1 KEGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAF-GTPFFEYLEEDPELAKRFNAA   79 (241)
T ss_dssp             SSTEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHH-SS-HHHHHHCSHHHHHHHHHH
T ss_pred             CCCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhc-CCcHHHhhhhChHHHHHHHHH
Confidence            4678999999999887766423688888887788899999999999999999999999 888999999999999999999


Q ss_pred             HHhhhHHhH-HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          126 MHNHTTIVM-KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       126 M~~~~~~~~-~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      |...+.... +.+++.+| |++.++|||||||+|+++.+++++||+++++|+
T Consensus        80 m~~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~  130 (241)
T PF00891_consen   80 MAEYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVF  130 (241)
T ss_dssp             HHHHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEE
T ss_pred             HHhhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceee
Confidence            999998887 88899999 999999999999999999999999999999885

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.85  E-value=7.6e-21  Score=154.09  Aligned_cols=159  Identities=42%  Similarity=0.608  Sum_probs=142.7

Q ss_pred             cccHHHHHHHHHHHhhHHHHHHHHHHHhC-------------------------------C----------------CCC
Q 037090           16 RDEQDFLLAMELASGTILPMTIKSAIELD-------------------------------R----------------SVQ   48 (178)
Q Consensus        16 ~~~~~~~~l~~~~~g~~~s~~L~~a~elg-------------------------------R----------------~~~   48 (178)
                      +..+...++++++.++..+++|++|||||                               |                ..+
T Consensus         2 ~e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~~p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~~   81 (342)
T KOG3178|consen    2 EENEASLRAMRLANGFALPMVLKAACELGVFDILANAGSPSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVGGE   81 (342)
T ss_pred             chhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCCCHHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeecce
Confidence            34556678999999999999999999999                               1                123


Q ss_pred             CceecchhccccCCCCCCCChHHHHHHhcChhhhhhhhhHHHHHhcCCcchhhhccCCchhhhhccChHHHHHHHHHHHh
Q 037090           49 RLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHN  128 (178)
Q Consensus        49 ~~y~~t~~s~~L~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~p~~~~~F~~~M~~  128 (178)
                       .|+++|+++++.++..+.|++++++...++..++.|..+.++++++..+|..++ |+..|+|...++.....|+.+|..
T Consensus        82 -~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~-G~~l~~~~~~~~~~~~~~~~sm~~  159 (342)
T KOG3178|consen   82 -VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAH-GMMLGGYGGADERFSKDFNGSMSF  159 (342)
T ss_pred             -eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCcccc-chhhhhhcccccccHHHHHHHHHH
Confidence             899999999877444334899999998899999999999999999999999999 888999999999999999999999


Q ss_pred             hhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          129 HTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      .+....+.+++.|.+|++....||||||.|..+..++.+||+++++.|
T Consensus       160 l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~inf  207 (342)
T KOG3178|consen  160 LSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINF  207 (342)
T ss_pred             HHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeec
Confidence            999998899999998999999999999999999999999999999986

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.54  E-value=6e-14  Score=114.30  Aligned_cols=121  Identities=15%  Similarity=0.277  Sum_probs=80.6

Q ss_pred             CCCCceecchhccccCCCCCCC---ChHHHHHHhcChhhhhhhhhHHHHHhcCCcchhhhccCCchhhhhccChHHHHHH
Q 037090           46 SVQRLYGLAPVSKYFVPNEEGV---SLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLF  122 (178)
Q Consensus        46 ~~~~~y~~t~~s~~L~~~~~~~---~~~~~v~~~~~~~~~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~p~~~~~F  122 (178)
                      +.+++|+||+.++.++.+++..   ++.+++.+. .......|.+|.++++ ++++|...+      ++....++.. .|
T Consensus        55 ~~~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r-~~~~~~~~~------~~~~~~~~~~-~~  125 (306)
T TIGR02716        55 LEDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVR-GQKNFKGQV------PYPPVTREDN-LY  125 (306)
T ss_pred             ecCCcEecchhHHhhccCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhc-CCccccccc------CCCCCCHHHH-Hh
Confidence            3568999999998665544311   112333332 1123356899999998 444554333      2223344443 34


Q ss_pred             HHHHH-hhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          123 NQSMH-NHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       123 ~~~M~-~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      ...|. .......+.+++..+ +++..+|||||||+|.+++.+++++|+++++++
T Consensus       126 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~  179 (306)
T TIGR02716       126 FEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTIL  179 (306)
T ss_pred             HHHHHHhcchhHHHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEE
Confidence            44444 444455577888888 888899999999999999999999999998875

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK06922 hypothetical protein; Provisional

Probab=97.82  E-value=7.2e-05  Score=66.46  Aligned_cols=69  Identities=10%  Similarity=0.052  Sum_probs=53.7

Q ss_pred             CchhhhhccChHHHHHHHHHHHhhhHHh--HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          106 MDGFAVAAKDEKINNLFNQSMHNHTTIV--MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       106 ~~~~e~~~~~p~~~~~F~~~M~~~~~~~--~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ..+|+++..+++...+|.+.|.......  .......++ +.+..+|+|||||+|.++..+++++|+.+.+.
T Consensus       377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtG  447 (677)
T PRK06922        377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYG  447 (677)
T ss_pred             hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE
Confidence            4789999999999999998887754432  122234555 66678999999999999999999999877654

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=97.33  E-value=0.00089  Score=53.08  Aligned_cols=52  Identities=15%  Similarity=0.177  Sum_probs=37.8

Q ss_pred             HHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          121 LFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       121 ~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      .|.+......+.. ..+++.++ .....+|+|||||+|.++..+++++|+.+.+
T Consensus         6 ~y~~~~~~~~~~~-~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~   57 (255)
T PRK14103          6 VYLAFADHRGRPF-YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIE   57 (255)
T ss_pred             HHHHHHhHhhCHH-HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEE
Confidence            3444333333333 56777777 6667899999999999999999999986654

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.28  E-value=0.00066  Score=51.28  Aligned_cols=53  Identities=15%  Similarity=0.231  Sum_probs=37.8

Q ss_pred             HHHH-HHhhhHHhHHH-HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          122 FNQS-MHNHTTIVMKE-ILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       122 F~~~-M~~~~~~~~~~-~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      |..+ |...++..... +++..+ .....+|+|||+|+|.++..+++++|+.+.+.
T Consensus         6 f~~~~~~~~~~~~~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~   60 (187)
T PRK08287          6 FLRGEKVPMTKEEVRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTA   60 (187)
T ss_pred             hccCCCCCCchHHHHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEE
Confidence            4443 44445544433 345555 66678999999999999999999999877654

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.10  E-value=0.0022  Score=44.41  Aligned_cols=38  Identities=11%  Similarity=0.034  Sum_probs=30.2

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      .+++.++ .....+|+|||+|.|.++..+++++|+.+.+
T Consensus        10 ~~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~   47 (124)
T TIGR02469        10 LTLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVY   47 (124)
T ss_pred             HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEE
Confidence            3455555 5555799999999999999999999986544

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=97.03  E-value=0.003  Score=49.99  Aligned_cols=40  Identities=18%  Similarity=0.369  Sum_probs=33.8

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ...+++.++ ..+..+|+|||||.|.++..+++++|..+.+
T Consensus        20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~   59 (258)
T PRK01683         20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARIT   59 (258)
T ss_pred             HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEE
Confidence            456777777 7777899999999999999999999986654

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=96.91  E-value=0.0034  Score=48.56  Aligned_cols=66  Identities=12%  Similarity=0.083  Sum_probs=43.4

Q ss_pred             chhhhhccChHHHHHHHHHHHhhhHHhHHHHHHhcCC-CCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          107 DGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKG-FERLNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       107 ~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~-~~~~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      ..|+.+...+.....+...|..........+++..+. .....+|+|||||+|.++..++++...+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~   81 (219)
T TIGR02021        15 QRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVK   81 (219)
T ss_pred             HHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEE
Confidence            4566677766666677777754433333445544431 33467999999999999999998754433

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=96.86  E-value=0.0024  Score=51.84  Aligned_cols=41  Identities=22%  Similarity=0.228  Sum_probs=34.3

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      +-+++.++ .....+|+|+|||.|.+++.+++++|+.+.+++
T Consensus       148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmv  188 (300)
T COG2813         148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLV  188 (300)
T ss_pred             HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEE
Confidence            56778888 554459999999999999999999998877654

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=96.78  E-value=0.003  Score=53.17  Aligned_cols=41  Identities=17%  Similarity=0.109  Sum_probs=32.4

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      .-+++.+| .....+|+|+|||+|.++..+++++|..+.+.+
T Consensus       218 rllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~v  258 (378)
T PRK15001        218 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFV  258 (378)
T ss_pred             HHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEE
Confidence            44666666 333368999999999999999999999876643

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=96.77  E-value=0.004  Score=48.41  Aligned_cols=40  Identities=20%  Similarity=0.375  Sum_probs=35.2

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      +..++...+ ......|||+|||.|.-..-+++|||....+
T Consensus        19 a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~   58 (257)
T COG4106          19 ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVIT   58 (257)
T ss_pred             HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEe
Confidence            467888888 8888999999999999999999999997643

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.43  E-value=0.01  Score=45.13  Aligned_cols=29  Identities=17%  Similarity=0.125  Sum_probs=25.4

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ..+|+|||||+|..+..+++++|..+.+-
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~g   74 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTL   74 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEE
Confidence            57899999999999999999999876553

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=96.39  E-value=0.0073  Score=48.53  Aligned_cols=39  Identities=15%  Similarity=0.327  Sum_probs=30.6

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      +..+++.++ ..+..+|+|||+|+|.++..++++.+++.+
T Consensus        31 ~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~~v~a   69 (272)
T PRK00274         31 LDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAAKVTA   69 (272)
T ss_pred             HHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCCcEEE
Confidence            345566666 666679999999999999999999875443

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=96.26  E-value=0.0054  Score=45.74  Aligned_cols=29  Identities=14%  Similarity=0.093  Sum_probs=25.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ...+|+|+|+|+|.++..+++++|+.+.+
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~   59 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVT   59 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEE
Confidence            35689999999999999999999997644

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.24  E-value=0.018  Score=43.80  Aligned_cols=38  Identities=11%  Similarity=0.025  Sum_probs=30.3

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      +++..+ .....+|+|||+|+|.++..+++..|..+.+.
T Consensus        32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~   69 (196)
T PRK07402         32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIA   69 (196)
T ss_pred             HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence            455555 66667999999999999999999888765543

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=96.20  E-value=0.012  Score=49.01  Aligned_cols=40  Identities=23%  Similarity=0.239  Sum_probs=30.5

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ..+++.++ .....+|+|+|||.|.++..+++++|..+.+.
T Consensus       186 ~lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~  225 (342)
T PRK09489        186 QLLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTL  225 (342)
T ss_pred             HHHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEE
Confidence            34455555 33335799999999999999999999877554

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=96.09  E-value=0.012  Score=47.37  Aligned_cols=40  Identities=10%  Similarity=0.108  Sum_probs=28.8

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      .+.+++..+ ..+..+|+|||||-|.++..++++| +++++-
T Consensus        51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~g   90 (273)
T PF02353_consen   51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTG   90 (273)
T ss_dssp             HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEE
T ss_pred             HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEE
Confidence            466777777 8888899999999999999999999 666543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=96.07  E-value=0.014  Score=44.78  Aligned_cols=36  Identities=14%  Similarity=0.032  Sum_probs=28.4

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      |.+.++ - +..+|+|||||+|..+..+++++|+.+.+
T Consensus        33 ~~~~~~-~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~   68 (202)
T PRK00121         33 WAELFG-N-DAPIHLEIGFGKGEFLVEMAKANPDINFI   68 (202)
T ss_pred             HHHHcC-C-CCCeEEEEccCCCHHHHHHHHHCCCccEE
Confidence            445554 2 45789999999999999999999986544

>TIGR00755 ksgA dimethyladenosine transferase

Probab=96.03  E-value=0.015  Score=46.06  Aligned_cols=39  Identities=18%  Similarity=0.337  Sum_probs=31.6

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      ...+++..+ ..+..+|+|||+|.|.++..++++.+.+-+
T Consensus        18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~   56 (253)
T TIGR00755        18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKKVTA   56 (253)
T ss_pred             HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCcEEE
Confidence            355666666 667789999999999999999999986433

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=96.02  E-value=0.016  Score=44.79  Aligned_cols=29  Identities=14%  Similarity=0.006  Sum_probs=23.5

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      ..+..+|+|||||+|.++..++++.+++.
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~~~~v~   89 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARRGAKVV   89 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHcCCEEE
Confidence            34457899999999999999998876543

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=95.99  E-value=0.0085  Score=45.28  Aligned_cols=29  Identities=17%  Similarity=0.161  Sum_probs=24.9

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ..+|+|||||+|..+..+++.+|..+.+.
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~   71 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTL   71 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEE
Confidence            46899999999999999999999866543

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=95.98  E-value=0.022  Score=46.07  Aligned_cols=40  Identities=15%  Similarity=0.151  Sum_probs=34.0

Q ss_pred             HhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          132 IVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      ...+.+++.+. +.+..+|+|||||-|.+++..+++| +++.
T Consensus        59 ~k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V   98 (283)
T COG2230          59 AKLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTV   98 (283)
T ss_pred             HHHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEE
Confidence            33567788888 9999999999999999999999999 5543

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.96  E-value=0.017  Score=45.79  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=25.1

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      .+++.++  .+..+|+|||||+|.++..++++..++
T Consensus        36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~g~~v   69 (255)
T PRK11036         36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAELGHQV   69 (255)
T ss_pred             HHHHhcC--CCCCEEEEeCCCchHHHHHHHHcCCEE
Confidence            3444443  334689999999999999999985443

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=95.94  E-value=0.021  Score=44.32  Aligned_cols=39  Identities=13%  Similarity=0.095  Sum_probs=29.6

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc-CCCeEE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKI-SIISLN  174 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~~~  174 (178)
                      ..+++..+ .....+|+|||||+|..+..+++++ |..+.+
T Consensus        35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~   74 (231)
T TIGR02752        35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVI   74 (231)
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEE
Confidence            34555555 6666899999999999999999986 555443

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=95.93  E-value=0.018  Score=48.63  Aligned_cols=37  Identities=8%  Similarity=0.019  Sum_probs=28.8

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      +++.+. -.....+||||+|+|.++..+++++|+...+
T Consensus       114 ~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~i  150 (390)
T PRK14121        114 FLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFI  150 (390)
T ss_pred             HHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEE
Confidence            444444 3345689999999999999999999987544

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=95.81  E-value=0.036  Score=43.68  Aligned_cols=38  Identities=11%  Similarity=0.088  Sum_probs=28.1

Q ss_pred             hHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          130 TTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      .+..+..+++.++ .....+|+|||||+|.++..+.++.
T Consensus        27 q~~~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~   64 (251)
T PRK10258         27 QRQSADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRERG   64 (251)
T ss_pred             HHHHHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHcC
Confidence            3344556666666 4456789999999999998887754

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=95.80  E-value=0.015  Score=44.39  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=26.9

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      +.+++.++ .....+|+|||||.|.++..++++.-
T Consensus        20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~g~   53 (197)
T PRK11207         20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAANGF   53 (197)
T ss_pred             HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHCCC
Confidence            45666666 54557999999999999999998743

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=95.76  E-value=0.048  Score=42.02  Aligned_cols=28  Identities=18%  Similarity=0.231  Sum_probs=24.7

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ..+|+|||||.|.++..+++.+|..+.+
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~   62 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFI   62 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEE
Confidence            3689999999999999999999987644

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=95.69  E-value=0.062  Score=41.47  Aligned_cols=39  Identities=13%  Similarity=0.119  Sum_probs=29.3

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC-CCeEEE
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTKIS-IISLNT  175 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P-~l~~~v  175 (178)
                      .+++.+. ..+..+|+|||||.|.++..+++++| ..+.+.
T Consensus        42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~   81 (239)
T PRK00216         42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVG   81 (239)
T ss_pred             HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEE
Confidence            3455554 44557899999999999999999998 455443

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=95.69  E-value=0.029  Score=42.60  Aligned_cols=38  Identities=13%  Similarity=0.026  Sum_probs=31.1

Q ss_pred             HHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          138 LETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       138 ~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      +.... ..+..+++|||+|+|..+++++..+|..+.+-|
T Consensus        27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AI   64 (187)
T COG2242          27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAI   64 (187)
T ss_pred             HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEE
Confidence            34444 566789999999999999999999999887643

>PRK04457 spermidine synthase; Provisional

Probab=95.58  E-value=0.019  Score=45.92  Aligned_cols=31  Identities=13%  Similarity=0.210  Sum_probs=27.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      +.++|+|||+|.|.++..+++++|+.+.+++
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~V   96 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAV   96 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEE
Confidence            3468999999999999999999999887764

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=95.57  E-value=0.028  Score=43.31  Aligned_cols=29  Identities=10%  Similarity=0.280  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      +..+|+|||||+|..+..+++..|..+.+
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~   71 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIY   71 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEE
Confidence            45689999999999999999988876543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=95.56  E-value=0.025  Score=45.08  Aligned_cols=36  Identities=14%  Similarity=0.184  Sum_probs=28.8

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      +..+++..+ ..+..+|+|||+|.|.++..++++..+
T Consensus        18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~~~   53 (258)
T PRK14896         18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRAKK   53 (258)
T ss_pred             HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhCCE
Confidence            455666665 666689999999999999999998543

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=95.52  E-value=0.022  Score=41.08  Aligned_cols=31  Identities=19%  Similarity=0.185  Sum_probs=24.5

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhc----CCCeEE
Q 037090          144 FERLNQFVDVADGLGENKNILLTKI----SIISLN  174 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~----P~l~~~  174 (178)
                      -.+..+|||+|+|.|+++..++..+    |.++.+
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~   57 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVL   57 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEE
Confidence            4567899999999999999999933    555543

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=95.43  E-value=0.024  Score=44.80  Aligned_cols=31  Identities=13%  Similarity=0.042  Sum_probs=25.1

Q ss_pred             CCCCeEEEecCCccHHHHHHHHh--cCCCeEEE
Q 037090          145 ERLNQFVDVADGLGENKNILLTK--ISIISLNT  175 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~--~P~l~~~v  175 (178)
                      .+..+|+|||||+|..+..+++.  +|..+.+.
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~g   87 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIA   87 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEE
Confidence            34578999999999999999884  67777654

>PRK06202 hypothetical protein; Provisional

Probab=95.42  E-value=0.07  Score=41.57  Aligned_cols=24  Identities=21%  Similarity=0.152  Sum_probs=20.0

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhc
Q 037090          145 ERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      .+..+|+|||||+|.++..+++..
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~   82 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWA   82 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHH
Confidence            455789999999999998888653

>TIGR00438 rrmJ cell division protein FtsJ

Probab=95.41  E-value=0.048  Score=41.11  Aligned_cols=33  Identities=9%  Similarity=0.234  Sum_probs=26.1

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      +.+.+....+..+|+|||+|+|.++..+++++.
T Consensus        23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~   55 (188)
T TIGR00438        23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVG   55 (188)
T ss_pred             HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhC
Confidence            444454345667999999999999999999873

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=95.39  E-value=0.044  Score=42.84  Aligned_cols=29  Identities=14%  Similarity=0.110  Sum_probs=25.3

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ..+|+|+|||+|.++..+++.+|+.+.+.
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~  116 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKERPDARVTA  116 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHCCCCEEEE
Confidence            35899999999999999999999876543

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00740 methyltransferase, putative

Probab=95.35  E-value=0.027  Score=44.08  Aligned_cols=30  Identities=10%  Similarity=0.016  Sum_probs=24.4

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhc--CCCeEE
Q 037090          145 ERLNQFVDVADGLGENKNILLTKI--SIISLN  174 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~--P~l~~~  174 (178)
                      .+..+|+|||||+|..+..+++++  |+.+.+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~   83 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKII   83 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEE
Confidence            345689999999999999999975  666554

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=95.18  E-value=0.034  Score=44.16  Aligned_cols=39  Identities=13%  Similarity=0.256  Sum_probs=30.3

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ++..+......++|+|+|.|.|..+..+++++|+.+...
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~   73 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVG   73 (248)
T ss_pred             HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEE
Confidence            444433244578999999999999999999999876654

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=95.17  E-value=0.054  Score=41.35  Aligned_cols=38  Identities=16%  Similarity=0.071  Sum_probs=29.0

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC-CeEE
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTKISI-ISLN  174 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~-l~~~  174 (178)
                      .+++... ..+..+|+|||||.|..+..+++++|. .+.+
T Consensus        30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~   68 (223)
T TIGR01934        30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVT   68 (223)
T ss_pred             HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEE
Confidence            3444444 445679999999999999999999986 4443

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=95.13  E-value=0.037  Score=45.63  Aligned_cols=24  Identities=21%  Similarity=0.062  Sum_probs=22.1

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCC
Q 037090          147 LNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .++|+|||||.|.++..++++.|.
T Consensus       123 g~~VLDIGCG~G~~~~~la~~g~~  146 (322)
T PRK15068        123 GRTVLDVGCGNGYHMWRMLGAGAK  146 (322)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCCC
Confidence            479999999999999999999876

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=95.08  E-value=0.062  Score=42.50  Aligned_cols=29  Identities=21%  Similarity=0.239  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ...+|+|||||+|.++..+++..+..+.+
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~   79 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVV   79 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEE
Confidence            46789999999999999999999944443

>TIGR00477 tehB tellurite resistance protein TehB

Probab=95.05  E-value=0.039  Score=42.03  Aligned_cols=32  Identities=22%  Similarity=0.119  Sum_probs=24.5

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      .+++.++ .....+|+|||||+|.++..++++.
T Consensus        21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~g   52 (195)
T TIGR00477        21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLAG   52 (195)
T ss_pred             HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHCC
Confidence            4455555 4345689999999999999999864

Part of a tellurite-reducing operon tehA and tehB

>PLN02244 tocopherol O-methyltransferase

Probab=95.01  E-value=0.063  Score=44.53  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=21.6

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhc
Q 037090          145 ERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ....+|+|||||.|..+..+++++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~  140 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY  140 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc
Confidence            456789999999999999999987

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=95.00  E-value=0.077  Score=42.18  Aligned_cols=28  Identities=25%  Similarity=0.233  Sum_probs=24.5

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ..+|+|+|+|+|.++..+++++|..+.+
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~  114 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELH  114 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEE
Confidence            3589999999999999999999987654

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=94.99  E-value=0.038  Score=44.73  Aligned_cols=29  Identities=10%  Similarity=0.150  Sum_probs=25.4

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ..+|+|+|+|+|.++..+++++|+.+.+-
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~a  150 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEAEVDA  150 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCCEEEE
Confidence            46899999999999999999999876543

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=94.97  E-value=0.066  Score=41.33  Aligned_cols=35  Identities=11%  Similarity=0.201  Sum_probs=28.4

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ..+++.++ ..+..+|+|||+|+|.++..+++..+.
T Consensus        67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~  101 (215)
T TIGR00080        67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGR  101 (215)
T ss_pred             HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCC
Confidence            45556666 666789999999999999999998764

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=94.95  E-value=0.071  Score=42.39  Aligned_cols=32  Identities=13%  Similarity=0.142  Sum_probs=26.7

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ..+..+|+|||+|+|..+..+++.+|..+.+.
T Consensus       106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~  137 (275)
T PRK09328        106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTA  137 (275)
T ss_pred             ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEE
Confidence            34556899999999999999999998876543

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=94.90  E-value=0.033  Score=45.62  Aligned_cols=28  Identities=11%  Similarity=0.118  Sum_probs=25.0

Q ss_pred             CeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          148 NQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       148 ~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      .+|+|+|||+|.++..+++++|+.+.+.
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~a  162 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDA  162 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEE
Confidence            5899999999999999999999877553

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=94.86  E-value=0.033  Score=40.18  Aligned_cols=27  Identities=15%  Similarity=0.129  Sum_probs=22.0

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      ....+|+|||||.|.++..++++.+.+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~   47 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKRGFEV   47 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHTTSEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCEE
Confidence            445699999999999999997775543

...

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=94.80  E-value=0.079  Score=42.34  Aligned_cols=34  Identities=21%  Similarity=0.385  Sum_probs=28.3

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ...+++.++ ..+..+|+|||||.|..+..+++++
T Consensus        41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~   74 (263)
T PTZ00098         41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY   74 (263)
T ss_pred             HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc
Confidence            356777776 7777899999999999999998776

>PRK04266 fibrillarin; Provisional

Probab=94.69  E-value=0.052  Score=42.52  Aligned_cols=34  Identities=3%  Similarity=0.053  Sum_probs=27.6

Q ss_pred             hcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          140 TYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       140 ~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      .++ ..+..+|+|+|+|+|..+..+++..|  .+.|+
T Consensus        67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~--~g~V~  100 (226)
T PRK04266         67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVE--EGVVY  100 (226)
T ss_pred             hCC-CCCCCEEEEEccCCCHHHHHHHHhcC--CCeEE
Confidence            355 66778999999999999999999987  44443

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=94.62  E-value=0.076  Score=41.17  Aligned_cols=62  Identities=11%  Similarity=0.164  Sum_probs=35.7

Q ss_pred             CchhhhhccChHHHHHHHHHHHhhh----HHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090          106 MDGFAVAAKDEKINNLFNQSMHNHT----TIVMKEILETYKGFERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       106 ~~~~e~~~~~p~~~~~F~~~M~~~~----~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      ..-++.+.++|+....|+.+-+...    ....+.+++.+..-.+..+|.|.|||.+.++.++.++
T Consensus        28 ~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~   93 (219)
T PF05148_consen   28 EEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK   93 (219)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC
Confidence            3455677889987777766655532    2234666666552344568999999999999877544

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>TIGR00452 methyltransferase, putative

Probab=94.62  E-value=0.08  Score=43.58  Aligned_cols=25  Identities=20%  Similarity=0.133  Sum_probs=22.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCC
Q 037090          146 RLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      +.++|+|||||+|.++..++...++
T Consensus       121 ~g~~VLDvGCG~G~~~~~~~~~g~~  145 (314)
T TIGR00452       121 KGRTILDVGCGSGYHMWRMLGHGAK  145 (314)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCC
Confidence            3479999999999999999988875

Known examples to date are restricted to the proteobacteria.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.60  E-value=0.061  Score=42.39  Aligned_cols=56  Identities=11%  Similarity=0.197  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHhhhHH----hHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          118 INNLFNQSMHNHTTI----VMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       118 ~~~~F~~~M~~~~~~----~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ..++|.......-..    ...+++...+ ...+++++|+|||+|..+.+|...--++.|+
T Consensus        94 ~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGv  153 (287)
T COG4976          94 YAERFDHILVDKLGYSVPELLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADRLTGV  153 (287)
T ss_pred             HHHHHHHHHHHHhcCccHHHHHHHHHhcc-CCccceeeecccCcCcccHhHHHHHhhccCC
Confidence            345666665543222    2344555555 4458899999999999999998887777664

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=94.50  E-value=0.077  Score=41.66  Aligned_cols=27  Identities=15%  Similarity=0.123  Sum_probs=24.5

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      ...+|+||+|.|.+..++++++|+...
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP~~nf   75 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNPEKNF   75 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCCCCCE
Confidence            368999999999999999999999754

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=94.47  E-value=0.14  Score=43.19  Aligned_cols=34  Identities=12%  Similarity=0.121  Sum_probs=27.5

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ..+++..+ .....+|+|||||.|.++..+++++.
T Consensus       157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~g  190 (383)
T PRK11705        157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHYG  190 (383)
T ss_pred             HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHCC
Confidence            45566666 66678999999999999999998763

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=94.46  E-value=0.084  Score=43.05  Aligned_cols=37  Identities=16%  Similarity=0.326  Sum_probs=29.4

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      ...+++..+ .....+|+|||+|.|.+...++++.+++
T Consensus        25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~~V   61 (294)
T PTZ00338         25 LDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAKKV   61 (294)
T ss_pred             HHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCCcE
Confidence            455666666 6666799999999999999999986554

>TIGR00536 hemK_fam HemK family putative methylases

Probab=94.43  E-value=0.052  Score=43.83  Aligned_cols=27  Identities=15%  Similarity=0.103  Sum_probs=24.4

Q ss_pred             CeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          148 NQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       148 ~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      .+|+|||+|+|.++..+++.+|+.+.+
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~  142 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVI  142 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEE
Confidence            589999999999999999999987654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=94.37  E-value=0.07  Score=46.08  Aligned_cols=38  Identities=18%  Similarity=0.185  Sum_probs=29.6

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      .+.+++..+ ..+..+|+|||||+|.++..+++++.++-
T Consensus        26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~~v~   63 (475)
T PLN02336         26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAGQVI   63 (475)
T ss_pred             hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCCEEE
Confidence            455666666 55567999999999999999999876543

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=94.36  E-value=0.079  Score=45.25  Aligned_cols=30  Identities=10%  Similarity=0.039  Sum_probs=25.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      +..+|+|||+|+|.++..+++++|..+.+-
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtA  280 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRA  280 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEE
Confidence            345899999999999999999999877543

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=94.32  E-value=0.19  Score=38.74  Aligned_cols=34  Identities=26%  Similarity=0.253  Sum_probs=25.8

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      .+.+.|..+....+|||||+|+|.++..++++.+
T Consensus        41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~   74 (209)
T PRK11188         41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIG   74 (209)
T ss_pred             HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcC
Confidence            3444444235567999999999999999999874

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=94.26  E-value=0.021  Score=44.09  Aligned_cols=23  Identities=26%  Similarity=0.268  Sum_probs=21.8

Q ss_pred             CeEEEecCCccHHHHHHHHhcCC
Q 037090          148 NQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       148 ~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .-++|||||-|.+++.+..+||+
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPd   84 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPD   84 (249)
T ss_pred             ceEEeeccCccchhhhccccCcc
Confidence            46999999999999999999999

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=94.13  E-value=0.11  Score=41.66  Aligned_cols=26  Identities=19%  Similarity=0.314  Sum_probs=22.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCC
Q 037090          146 RLNQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      +..+|+|||||+|.++..+++.+|..
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~  110 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEI  110 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccc
Confidence            34689999999999999999998864

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=94.09  E-value=0.07  Score=46.75  Aligned_cols=29  Identities=14%  Similarity=0.193  Sum_probs=25.4

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ..+|+|||+|+|.+++.+++++|+.+.+-
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~a  167 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIA  167 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEE
Confidence            35899999999999999999999877653

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=94.09  E-value=0.049  Score=44.06  Aligned_cols=25  Identities=16%  Similarity=0.175  Sum_probs=23.0

Q ss_pred             eEEEecCCccHHHHHHHHhcCCCeE
Q 037090          149 QFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       149 ~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      +|+|||.|+|..+++++++.|+.+.
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V  137 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEV  137 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeE
Confidence            7999999999999999999997554

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=94.00  E-value=0.13  Score=44.44  Aligned_cols=36  Identities=17%  Similarity=0.326  Sum_probs=28.1

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      ..+++.++ ..+..+|+|||||+|..+..+++++ +.+
T Consensus       256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~  291 (475)
T PLN02336        256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVH  291 (475)
T ss_pred             HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCE
Confidence            45666666 6666799999999999999988876 444

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=93.97  E-value=0.18  Score=42.02  Aligned_cols=38  Identities=21%  Similarity=0.260  Sum_probs=28.2

Q ss_pred             HHHhcCCCC-CCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          137 ILETYKGFE-RLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       137 ~~~~~~~~~-~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      +++... +. ...+|+|||||+|.++..+++++|..+.+.
T Consensus       104 ~l~~~~-l~~~~~~VLDLGcGtG~~~l~La~~~~~~~Vtg  142 (340)
T PLN02490        104 ALEPAD-LSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTI  142 (340)
T ss_pred             HHhhcc-cCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEE
Confidence            444444 42 346899999999999999999988765443

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=93.89  E-value=0.12  Score=44.58  Aligned_cols=58  Identities=16%  Similarity=0.189  Sum_probs=35.6

Q ss_pred             chhhhhccChHHHHHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          107 DGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       107 ~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ..||.++++|..-..|.+|+..   .. ....+.-..-.+.+.|+|||+|+|-++...+++.
T Consensus       151 ~tYe~fE~D~vKY~~Ye~AI~~---al-~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~  208 (448)
T PF05185_consen  151 QTYEVFEKDPVKYDQYERAIEE---AL-KDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAG  208 (448)
T ss_dssp             HHHHHHCC-HHHHHHHHHHHHH---HH-HHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTT
T ss_pred             ccHhhHhcCHHHHHHHHHHHHH---HH-HhhhhhccccccceEEEEeCCCccHHHHHHHHHH
Confidence            4689999999888788877532   11 1222221101135799999999999998776654

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=93.84  E-value=0.14  Score=39.21  Aligned_cols=34  Identities=15%  Similarity=0.138  Sum_probs=26.5

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ..+++..+ ..+..+|+|||+|+|..+..+++..+
T Consensus        62 ~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~   95 (205)
T PRK13944         62 AMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIE   95 (205)
T ss_pred             HHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcC
Confidence            34455555 55567999999999999999998875

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=93.76  E-value=0.099  Score=42.69  Aligned_cols=47  Identities=21%  Similarity=0.133  Sum_probs=33.0

Q ss_pred             HHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          121 LFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       121 ~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .|..+-...+.+. -.+++.+. . +.++++|||||+|.++++.++--..
T Consensus       140 AFGTG~HpTT~lc-L~~Le~~~-~-~g~~vlDvGcGSGILaIAa~kLGA~  186 (300)
T COG2264         140 AFGTGTHPTTSLC-LEALEKLL-K-KGKTVLDVGCGSGILAIAAAKLGAK  186 (300)
T ss_pred             ccCCCCChhHHHH-HHHHHHhh-c-CCCEEEEecCChhHHHHHHHHcCCc
Confidence            4654444444444 34677776 4 6689999999999999998876543

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=93.71  E-value=0.094  Score=42.37  Aligned_cols=31  Identities=23%  Similarity=0.220  Sum_probs=23.3

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ++...+ .....+|+|||||.|.++..++++.
T Consensus       112 ~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~g  142 (287)
T PRK12335        112 VLEAVQ-TVKPGKALDLGCGQGRNSLYLALLG  142 (287)
T ss_pred             HHHHhh-ccCCCCEEEeCCCCCHHHHHHHHCC
Confidence            444444 3334589999999999999998864

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=93.68  E-value=0.41  Score=38.18  Aligned_cols=28  Identities=21%  Similarity=0.172  Sum_probs=22.8

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhc-CCC
Q 037090          144 FERLNQFVDVADGLGENKNILLTKI-SII  171 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~-P~l  171 (178)
                      ..+..+|+|||||+|.++..+++++ |..
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~   99 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDG   99 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCC
Confidence            4456799999999999999999886 443

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=93.59  E-value=0.82  Score=36.57  Aligned_cols=36  Identities=11%  Similarity=0.141  Sum_probs=24.2

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccH----HHHHHHHhcCC
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGE----NKNILLTKISI  170 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~----~~~~i~~~~P~  170 (178)
                      .+.+++.-+ ..+..+|+|+|||+|.    +++.+++.+|.
T Consensus        88 lp~l~~~~~-~~~~~ri~d~GCgtGee~YslA~~l~e~~~~  127 (264)
T smart00138       88 LPLLIASRR-HGRRVRIWSAGCSTGEEPYSLAMLLAETLPK  127 (264)
T ss_pred             hHHHHHhcC-CCCCEEEEeccccCChHHHHHHHHHHHHhhh
Confidence            344444333 3444689999999997    56667777764

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=93.50  E-value=0.21  Score=38.00  Aligned_cols=34  Identities=9%  Similarity=0.113  Sum_probs=26.0

Q ss_pred             HhcCCCCCCCeEEEecCCccHHHHHHHHhc-CCCeE
Q 037090          139 ETYKGFERLNQFVDVADGLGENKNILLTKI-SIISL  173 (178)
Q Consensus       139 ~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~~  173 (178)
                      ...+ .....+|+|+|+|+|.++..+++.. |..+.
T Consensus        34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v   68 (198)
T PRK00377         34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKV   68 (198)
T ss_pred             HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEE
Confidence            3445 5566799999999999999998875 44443

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=93.47  E-value=0.13  Score=41.91  Aligned_cols=46  Identities=22%  Similarity=0.225  Sum_probs=31.0

Q ss_pred             HHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          121 LFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       121 ~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      .|..+-...+++... +++.+. .. .++|+|||+|+|.++++.++.-.
T Consensus       139 AFGTG~H~TT~lcl~-~l~~~~-~~-g~~vLDvG~GSGILaiaA~klGA  184 (295)
T PF06325_consen  139 AFGTGHHPTTRLCLE-LLEKYV-KP-GKRVLDVGCGSGILAIAAAKLGA  184 (295)
T ss_dssp             SS-SSHCHHHHHHHH-HHHHHS-ST-TSEEEEES-TTSHHHHHHHHTTB
T ss_pred             cccCCCCHHHHHHHH-HHHHhc-cC-CCEEEEeCCcHHHHHHHHHHcCC
Confidence            466555555555544 566665 43 46999999999999999888654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=93.40  E-value=0.23  Score=38.38  Aligned_cols=35  Identities=9%  Similarity=0.220  Sum_probs=28.0

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ...+++..+ ..+..+|+|||+|+|.++..+++..+
T Consensus        65 ~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~   99 (212)
T PRK13942         65 VAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVG   99 (212)
T ss_pred             HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcC
Confidence            345666666 77778999999999999988888754

>PRK05785 hypothetical protein; Provisional

Probab=93.32  E-value=0.13  Score=40.22  Aligned_cols=22  Identities=27%  Similarity=0.299  Sum_probs=20.2

Q ss_pred             CCeEEEecCCccHHHHHHHHhc
Q 037090          147 LNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ..+|+|||||+|.++..+++++
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~   73 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF   73 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc
Confidence            4689999999999999999987

>PLN02366 spermidine synthase

Probab=93.13  E-value=0.15  Score=41.91  Aligned_cols=27  Identities=15%  Similarity=0.094  Sum_probs=22.1

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      .+.++|+|||||.|..+.++++ +|.+.
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk-~~~v~  116 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIAR-HSSVE  116 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHh-CCCCC
Confidence            3467999999999999999985 57654

>TIGR03438 probable methyltransferase

Probab=93.07  E-value=0.22  Score=40.56  Aligned_cols=23  Identities=17%  Similarity=0.377  Sum_probs=20.7

Q ss_pred             CCeEEEecCCccHHHHHHHHhcC
Q 037090          147 LNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ..+|||+|||+|.....++++.|
T Consensus        64 ~~~iLELGcGtG~~t~~Ll~~l~   86 (301)
T TIGR03438        64 GCELVELGSGSSRKTRLLLDALR   86 (301)
T ss_pred             CCeEEecCCCcchhHHHHHHhhc
Confidence            35799999999999999999886

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=93.02  E-value=0.091  Score=41.46  Aligned_cols=28  Identities=18%  Similarity=-0.050  Sum_probs=23.5

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ..+|+|||||-|.++..+++.--.+.|+
T Consensus        60 g~~vLDvGCGgG~Lse~mAr~Ga~Vtgi   87 (243)
T COG2227          60 GLRVLDVGCGGGILSEPLARLGASVTGI   87 (243)
T ss_pred             CCeEEEecCCccHhhHHHHHCCCeeEEe
Confidence            3679999999999999999988666553

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=93.00  E-value=0.12  Score=41.92  Aligned_cols=45  Identities=24%  Similarity=0.245  Sum_probs=29.8

Q ss_pred             HHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          121 LFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       121 ~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      .|..+....++.. -.+++.+. .. .++|+|||||+|.++..+++..
T Consensus       137 aFgtG~h~tt~l~-l~~l~~~~-~~-g~~VLDvGcGsG~lai~aa~~g  181 (288)
T TIGR00406       137 AFGTGTHPTTSLC-LEWLEDLD-LK-DKNVIDVGCGSGILSIAALKLG  181 (288)
T ss_pred             cccCCCCHHHHHH-HHHHHhhc-CC-CCEEEEeCCChhHHHHHHHHcC
Confidence            3555444444443 33555555 43 4799999999999998887654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=92.98  E-value=0.24  Score=40.04  Aligned_cols=31  Identities=16%  Similarity=0.288  Sum_probs=26.0

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      +.....++|+|+|+|.++..++..-|..+.+
T Consensus       146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~  176 (328)
T KOG2904|consen  146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVT  176 (328)
T ss_pred             hcccceEEEecCCccHHHHHHHhcCCCceEE
Confidence            4445589999999999999999999966554

>PRK00811 spermidine synthase; Provisional

Probab=92.57  E-value=0.17  Score=40.86  Aligned_cols=30  Identities=13%  Similarity=0.170  Sum_probs=22.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      +.++|+|||||.|..+.+++++.+..+.++
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~  105 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITL  105 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEE
Confidence            457899999999999999996534334443

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=92.49  E-value=0.25  Score=34.23  Aligned_cols=37  Identities=22%  Similarity=0.272  Sum_probs=25.2

Q ss_pred             hhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHH
Q 037090          129 HTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLT  166 (178)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~  166 (178)
                      .++..+.-|-+.|. -.....+||||||.|.+.-.+.+
T Consensus        42 IAAyLi~LW~~~~~-~~~~~~FVDlGCGNGLLV~IL~~   78 (112)
T PF07757_consen   42 IAAYLIELWRDMYG-EQKFQGFVDLGCGNGLLVYILNS   78 (112)
T ss_pred             HHHHHHHHHhcccC-CCCCCceEEccCCchHHHHHHHh
Confidence            34444555555555 34566899999999998776554

; GO: 0008168 methyltransferase activity

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=92.46  E-value=0.22  Score=38.08  Aligned_cols=36  Identities=22%  Similarity=0.246  Sum_probs=25.9

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      ..+++..+ .-+..+++|+|||.|..+.-++++-=++
T Consensus        20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~G~~V   55 (192)
T PF03848_consen   20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQGFDV   55 (192)
T ss_dssp             HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHTT-EE
T ss_pred             HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHCCCeE
Confidence            34666666 5556799999999999999999875443

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=92.38  E-value=0.34  Score=37.58  Aligned_cols=23  Identities=17%  Similarity=-0.010  Sum_probs=19.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHhc
Q 037090          146 RLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ...+|+|||+|.|.++..+++..
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~~   70 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARLG   70 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcC
Confidence            45689999999999999888764

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=92.37  E-value=0.14  Score=44.01  Aligned_cols=36  Identities=19%  Similarity=0.148  Sum_probs=26.8

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ...+++..+ ..+..+|+|+|+|+|.++..++++...
T Consensus       286 ~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~~~  321 (443)
T PRK13168        286 VARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQAAE  321 (443)
T ss_pred             HHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhCCE
Confidence            344455444 445579999999999999999988643

>PHA03411 putative methyltransferase; Provisional

Probab=92.33  E-value=0.21  Score=40.36  Aligned_cols=28  Identities=14%  Similarity=0.265  Sum_probs=23.4

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ..+|+|+|+|+|.++..++++.|..+.+
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~   92 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIV   92 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEE
Confidence            3589999999999999999988765543

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=92.08  E-value=0.37  Score=36.91  Aligned_cols=33  Identities=12%  Similarity=0.302  Sum_probs=25.1

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      .+++..+ ..+..+|+|||+|+|..+..+++...
T Consensus        69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~  101 (212)
T PRK00312         69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR  101 (212)
T ss_pred             HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC
Confidence            3445555 66678999999999999887777654

>TIGR00478 tly hemolysin TlyA family protein

Probab=92.04  E-value=0.36  Score=37.95  Aligned_cols=38  Identities=24%  Similarity=0.254  Sum_probs=28.4

Q ss_pred             hHHhHHHHHHhcCCC-CCCCeEEEecCCccHHHHHHHHhc
Q 037090          130 TTIVMKEILETYKGF-ERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       130 ~~~~~~~~~~~~~~~-~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      +......+++.++ . -+.++++|||+|+|.++..++++-
T Consensus        59 ~~~kL~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~g   97 (228)
T TIGR00478        59 GGEKLKEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQKG   97 (228)
T ss_pred             hHHHHHHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHcC
Confidence            3344456777766 3 245789999999999999999873

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=91.88  E-value=0.17  Score=40.03  Aligned_cols=25  Identities=16%  Similarity=-0.073  Sum_probs=20.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCC
Q 037090          146 RLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ...+|+|||+|+|.+++.+++..+.
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~g~~  143 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKLGAK  143 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCCC
Confidence            4578999999999999987776554

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=91.80  E-value=0.26  Score=38.73  Aligned_cols=31  Identities=19%  Similarity=0.231  Sum_probs=19.7

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhc-CCCeEE
Q 037090          144 FERLNQFVDVADGLGENKNILLTKI-SIISLN  174 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~~~  174 (178)
                      .....+|+|||||+|.++..++++. |..+.+
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~   76 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVV   76 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEE
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEE
Confidence            3445699999999999999999886 444443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=91.80  E-value=0.17  Score=41.39  Aligned_cols=25  Identities=12%  Similarity=0.009  Sum_probs=22.5

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCC
Q 037090          147 LNQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      .++|+|||||.|.++...+++.|..
T Consensus       116 gk~VLDIGC~nGY~~frM~~~GA~~  140 (315)
T PF08003_consen  116 GKRVLDIGCNNGYYSFRMLGRGAKS  140 (315)
T ss_pred             CCEEEEecCCCcHHHHHHhhcCCCE
Confidence            4799999999999999999998863

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=91.74  E-value=0.17  Score=41.76  Aligned_cols=21  Identities=24%  Similarity=0.191  Sum_probs=18.4

Q ss_pred             CCeEEEecCCccHHHHHHHHh
Q 037090          147 LNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      ..+|+|||||.|.++..+++.
T Consensus       132 g~~ILDIGCG~G~~s~~La~~  152 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLARM  152 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHHc
Confidence            458999999999999988864

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=91.56  E-value=0.23  Score=43.57  Aligned_cols=29  Identities=14%  Similarity=0.098  Sum_probs=25.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      +...+||||+|.|.++..+++++|+...+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~i  375 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFI  375 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEE
Confidence            35799999999999999999999997543

>PRK14967 putative methyltransferase; Provisional

Probab=91.41  E-value=0.29  Score=37.92  Aligned_cols=25  Identities=12%  Similarity=0.064  Sum_probs=20.9

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhc
Q 037090          144 FERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      .....+|+|+|+|+|.++..+++..
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~   58 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAG   58 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcC
Confidence            4445799999999999999988763

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=91.37  E-value=0.37  Score=38.42  Aligned_cols=36  Identities=14%  Similarity=0.286  Sum_probs=30.7

Q ss_pred             HhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          132 IVMKEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ..++.+++..+ ..+...|+|||.|.|.+..+++++.
T Consensus        17 ~~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~   52 (262)
T PF00398_consen   17 NIADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG   52 (262)
T ss_dssp             HHHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS
T ss_pred             HHHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc
Confidence            34567777777 7778899999999999999999988

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=91.33  E-value=0.42  Score=39.48  Aligned_cols=35  Identities=11%  Similarity=0.231  Sum_probs=27.7

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ..+++..+ ..+..+|+|||+|+|.++..+++..+.
T Consensus        70 a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~  104 (322)
T PRK13943         70 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGE  104 (322)
T ss_pred             HHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCC
Confidence            34555555 566679999999999999999998864

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=90.92  E-value=0.24  Score=40.79  Aligned_cols=22  Identities=18%  Similarity=-0.041  Sum_probs=19.7

Q ss_pred             CCeEEEecCCccHHHHHHHHhc
Q 037090          147 LNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ..+|+|||||+|.++..++++.
T Consensus       145 ~~~VLDlGcGtG~~a~~la~~g  166 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLALEG  166 (315)
T ss_pred             CCEEEEecCCCCHHHHHHHHCC
Confidence            4689999999999999999874

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=90.64  E-value=0.66  Score=37.17  Aligned_cols=41  Identities=20%  Similarity=0.361  Sum_probs=33.8

Q ss_pred             hHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          133 VMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       133 ~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      .+..+++..+ ..+..+|+.||.|.|++...++++...+.++
T Consensus        18 v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~ai   58 (259)
T COG0030          18 VIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAI   58 (259)
T ss_pred             HHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEE
Confidence            3567777776 6667899999999999999999998886553

>PRK01581 speE spermidine synthase; Validated

Probab=90.44  E-value=0.4  Score=40.35  Aligned_cols=30  Identities=10%  Similarity=0.129  Sum_probs=22.2

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      .+.++|++||||.|..+.++++..|..+.+
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It  178 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVD  178 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEE
Confidence            345799999999999998888643333443

>PLN02672 methionine S-methyltransferase

Probab=90.25  E-value=0.36  Score=45.97  Aligned_cols=27  Identities=11%  Similarity=-0.006  Sum_probs=24.0

Q ss_pred             CeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          148 NQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       148 ~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      .+|+|||+|+|.+++.+++++|..+++
T Consensus       120 ~~VLDlG~GSG~Iai~La~~~~~~~v~  146 (1082)
T PLN02672        120 KTVAELGCGNGWISIAIAEKWLPSKVY  146 (1082)
T ss_pred             CEEEEEecchHHHHHHHHHHCCCCEEE
Confidence            589999999999999999999976544

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=90.24  E-value=0.62  Score=38.88  Aligned_cols=26  Identities=19%  Similarity=0.212  Sum_probs=19.6

Q ss_pred             hcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090          140 TYKGFERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       140 ~~~~~~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      ..| |.+ +.|||||+|+|.++.-.+.+
T Consensus       173 ~sD-F~~-kiVlDVGaGSGILS~FAaqA  198 (517)
T KOG1500|consen  173 HSD-FQD-KIVLDVGAGSGILSFFAAQA  198 (517)
T ss_pred             ccc-cCC-cEEEEecCCccHHHHHHHHh
Confidence            444 653 78999999999998765554

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=90.18  E-value=0.6  Score=37.14  Aligned_cols=30  Identities=10%  Similarity=0.142  Sum_probs=23.0

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhc-CCCeE
Q 037090          144 FERLNQFVDVADGLGENKNILLTKI-SIISL  173 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~~  173 (178)
                      .....+|+|||+|.|..+..+++.. |..+.
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v  105 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKV  105 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEE
Confidence            4556799999999999988877765 44343

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=90.07  E-value=0.49  Score=36.14  Aligned_cols=27  Identities=15%  Similarity=0.191  Sum_probs=21.7

Q ss_pred             CCeEEEecCCccHHHHHHHHh-cCC-CeE
Q 037090          147 LNQFVDVADGLGENKNILLTK-ISI-ISL  173 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~-~P~-l~~  173 (178)
                      ..+|||+|+|.|+++..+++. ||+ |.|
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf~~~L~G   96 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTG   96 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcCCCCccc
Confidence            349999999999999998875 455 544

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=90.05  E-value=0.2  Score=40.19  Aligned_cols=27  Identities=19%  Similarity=0.021  Sum_probs=23.1

Q ss_pred             CeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          148 NQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       148 ~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ..|+|||||.|.++..+++---.+.|+
T Consensus        91 ~~ilDvGCGgGLLSepLArlga~V~GI  117 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARLGAQVTGI  117 (282)
T ss_pred             ceEEEeccCccccchhhHhhCCeeEee
Confidence            569999999999999999887766654

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=89.86  E-value=1.3  Score=35.51  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=22.0

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCC
Q 037090          147 LNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .-.+|||+||+|..+..|++.-+.
T Consensus       101 ~m~~lDvaGGTGDiaFril~~v~s  124 (296)
T KOG1540|consen  101 GMKVLDVAGGTGDIAFRILRHVKS  124 (296)
T ss_pred             CCeEEEecCCcchhHHHHHHhhcc
Confidence            468999999999999999998877

>PHA03412 putative methyltransferase; Provisional

Probab=89.81  E-value=0.41  Score=37.90  Aligned_cols=23  Identities=17%  Similarity=0.307  Sum_probs=20.7

Q ss_pred             CCeEEEecCCccHHHHHHHHhcC
Q 037090          147 LNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ..+|||+|+|+|.++..++++.+
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~   72 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMM   72 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcc
Confidence            46899999999999999999865

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=89.72  E-value=0.39  Score=36.86  Aligned_cols=24  Identities=21%  Similarity=-0.038  Sum_probs=20.8

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCC
Q 037090          147 LNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ..+|+|||+|+|.++..+++..++
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~~~   69 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLGAN   69 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcCCe
Confidence            568999999999999998887655

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=89.59  E-value=0.3  Score=38.68  Aligned_cols=29  Identities=17%  Similarity=0.106  Sum_probs=23.4

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      ++.+.++|||+|+|+.++.+++.|-.+=+
T Consensus        32 ~~h~~a~DvG~G~Gqa~~~iae~~k~VIa   60 (261)
T KOG3010|consen   32 EGHRLAWDVGTGNGQAARGIAEHYKEVIA   60 (261)
T ss_pred             CCcceEEEeccCCCcchHHHHHhhhhhee
Confidence            34459999999999998889888776544

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=89.52  E-value=0.82  Score=35.31  Aligned_cols=35  Identities=17%  Similarity=0.241  Sum_probs=23.1

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      .+++.+. ..+..+++|||.|.|......+-.++--
T Consensus        33 ~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~   67 (205)
T PF08123_consen   33 KILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCK   67 (205)
T ss_dssp             HHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--S
T ss_pred             HHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCc
Confidence            4555555 6667899999999999999888777643

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>TIGR00417 speE spermidine synthase

Probab=89.43  E-value=0.57  Score=37.53  Aligned_cols=29  Identities=14%  Similarity=0.126  Sum_probs=22.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      +.++|++||||.|..+..+++..|..+.+
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~  100 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKAT  100 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEE
Confidence            34599999999999999998765444443

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=89.22  E-value=0.52  Score=40.27  Aligned_cols=34  Identities=21%  Similarity=0.191  Sum_probs=25.7

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .+.+... ..+..+|+|+|+|.|.++..+++....
T Consensus       283 ~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~~~  316 (431)
T TIGR00479       283 RALEALE-LQGEELVVDAYCGVGTFTLPLAKQAKS  316 (431)
T ss_pred             HHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhCCE
Confidence            3444444 555679999999999999999987643

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=88.91  E-value=0.74  Score=39.42  Aligned_cols=34  Identities=9%  Similarity=0.034  Sum_probs=26.8

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      ++...+ .....+|+|+|+|+|..+..++++.|..
T Consensus       236 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~  269 (427)
T PRK10901        236 AATLLA-PQNGERVLDACAAPGGKTAHILELAPQA  269 (427)
T ss_pred             HHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCC
Confidence            334444 4456789999999999999999999863

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=88.68  E-value=0.71  Score=35.73  Aligned_cols=34  Identities=15%  Similarity=0.367  Sum_probs=25.6

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ...+++..+ .....+|+|||+|+|..+..+++-.
T Consensus        61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lv   94 (209)
T PF01135_consen   61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLV   94 (209)
T ss_dssp             HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHH
T ss_pred             HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhc
Confidence            355677777 7778899999999999999888765

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=88.66  E-value=0.44  Score=39.59  Aligned_cols=25  Identities=16%  Similarity=0.048  Sum_probs=21.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCC
Q 037090          146 RLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      +.++|+|||||+|.+++-.+++.+.
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAGA~   84 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAGAR   84 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCcc
Confidence            4589999999999999988888743

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=88.61  E-value=0.52  Score=38.61  Aligned_cols=23  Identities=17%  Similarity=-0.051  Sum_probs=20.0

Q ss_pred             CCeEEEecCCccHHHHHHHHhcC
Q 037090          147 LNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ..+|+|+|||+|.++..++++..
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~~~  196 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATPGM  196 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhcCC
Confidence            36899999999999999998543

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=88.44  E-value=1  Score=34.85  Aligned_cols=27  Identities=7%  Similarity=-0.156  Sum_probs=21.7

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      ....+|+|+|||.|..+..++++-=++
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~~V   59 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGHRV   59 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCCeE
Confidence            344699999999999999999874333

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK04148 hypothetical protein; Provisional

Probab=87.72  E-value=1.2  Score=32.04  Aligned_cols=34  Identities=18%  Similarity=0.082  Sum_probs=23.2

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccH-HHHHHHHhcC
Q 037090          135 KEILETYKGFERLNQFVDVADGLGE-NKNILLTKIS  169 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~-~~~~i~~~~P  169 (178)
                      ..+.+.++ -.+..+++|||.|.|. ++..+.+..-
T Consensus         6 ~~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~G~   40 (134)
T PRK04148          6 EFIAENYE-KGKNKKIVELGIGFYFKVAKKLKESGF   40 (134)
T ss_pred             HHHHHhcc-cccCCEEEEEEecCCHHHHHHHHHCCC
Confidence            34555565 3334689999999996 7777776543

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=87.64  E-value=0.92  Score=37.50  Aligned_cols=29  Identities=7%  Similarity=-0.106  Sum_probs=24.2

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ...+++|||+|.|.....++.+.|..+.+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~  142 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFV  142 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEE
Confidence            35689999999999988888888876644

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=87.45  E-value=0.96  Score=38.88  Aligned_cols=34  Identities=6%  Similarity=0.020  Sum_probs=26.0

Q ss_pred             HHhcCCCCCCCeEEEecCCccHHHHHHHHhc-CCCe
Q 037090          138 LETYKGFERLNQFVDVADGLGENKNILLTKI-SIIS  172 (178)
Q Consensus       138 ~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~  172 (178)
                      ...++ ..+..+|+|+|+|.|..+..++++. |..+
T Consensus       243 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~  277 (444)
T PRK14902        243 APALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGK  277 (444)
T ss_pred             HHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE
Confidence            33444 5556789999999999999999986 4433

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=87.29  E-value=0.67  Score=38.99  Aligned_cols=22  Identities=18%  Similarity=0.027  Sum_probs=19.2

Q ss_pred             CCeEEEecCCccHHHHHHHHhc
Q 037090          147 LNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ..+|+|+|+|+|.++..++.+.
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~~  255 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGPD  255 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhcC
Confidence            3689999999999999999654

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=87.19  E-value=1  Score=34.11  Aligned_cols=24  Identities=21%  Similarity=0.137  Sum_probs=21.6

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCC
Q 037090          147 LNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ..+++|+++|+|.++.+++++...
T Consensus        50 g~~vLDLfaGsG~lglea~srga~   73 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRGAK   73 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCCCC
Confidence            468999999999999999999764

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=86.97  E-value=1.4  Score=34.19  Aligned_cols=27  Identities=7%  Similarity=-0.162  Sum_probs=21.7

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .....+|+|+|||.|..+..++++-=+
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~G~~   61 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQGHE   61 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhCCCe
Confidence            344569999999999999999986433

>PLN03075 nicotianamine synthase; Provisional

Probab=86.73  E-value=1.7  Score=35.56  Aligned_cols=29  Identities=14%  Similarity=0.044  Sum_probs=21.1

Q ss_pred             CCCeEEEecCCccHHHHH--HHHhcCCCeEE
Q 037090          146 RLNQFVDVADGLGENKNI--LLTKISIISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~--i~~~~P~l~~~  174 (178)
                      +.++|+|||+|.|-+...  .++.+|+.+++
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~  153 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFH  153 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEE
Confidence            568999999999955444  44567886654

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=86.73  E-value=1.8  Score=33.71  Aligned_cols=30  Identities=13%  Similarity=0.209  Sum_probs=27.1

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      .++++|||-|-|.=++-++=.+|+++.+++
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLl   97 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLL   97 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEE
Confidence            589999999999999999999999996664

>PRK03612 spermidine synthase; Provisional

Probab=86.63  E-value=1  Score=39.68  Aligned_cols=29  Identities=14%  Similarity=0.088  Sum_probs=22.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCC-CeEEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISI-ISLNT  175 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~-l~~~v  175 (178)
                      +.++|+|||||.|..+.++++ +|. .+.++
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~  326 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLK-YPDVEQVTL  326 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHh-CCCcCeEEE
Confidence            457899999999999999986 666 34443

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=86.36  E-value=0.77  Score=35.08  Aligned_cols=24  Identities=13%  Similarity=-0.101  Sum_probs=20.7

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCC
Q 037090          147 LNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .++|+|+|+|+|.+++..+-.-|+
T Consensus        46 g~~V~DlG~GTG~La~ga~~lGa~   69 (198)
T COG2263          46 GKTVLDLGAGTGILAIGAALLGAS   69 (198)
T ss_pred             CCEEEEcCCCcCHHHHHHHhcCCc
Confidence            468999999999999998877665

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=86.16  E-value=1  Score=36.10  Aligned_cols=29  Identities=17%  Similarity=0.221  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      +..+++|||.|.|.....++..|.++-+|
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aT  122 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYAT  122 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEee
Confidence            35689999999999999999988886543

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=86.14  E-value=0.99  Score=37.71  Aligned_cols=24  Identities=13%  Similarity=0.191  Sum_probs=20.6

Q ss_pred             CeEEEecCCccHHHHHHHHhcCCC
Q 037090          148 NQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       148 ~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      ..|+|+++|+|.++..+++....+
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~~v  222 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFRRV  222 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCCEE
Confidence            369999999999999999887543

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=86.01  E-value=0.67  Score=40.38  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=21.0

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhc
Q 037090          145 ERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      .+..+++|||||.|.++..++++.
T Consensus       116 g~iR~~LDvGcG~aSF~a~l~~r~  139 (506)
T PF03141_consen  116 GGIRTALDVGCGVASFGAYLLERN  139 (506)
T ss_pred             CceEEEEeccceeehhHHHHhhCC
Confidence            356789999999999999998875

; GO: 0008168 methyltransferase activity

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=85.92  E-value=2.3  Score=32.64  Aligned_cols=23  Identities=17%  Similarity=0.133  Sum_probs=19.2

Q ss_pred             CCeEEEecCCccHHHHHHHHhcC
Q 037090          147 LNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ..+|+|+|+|+|.++.+.+.+..
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr~a   76 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSRYA   76 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHcCC
Confidence            46899999999999998766653

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=85.65  E-value=2.3  Score=32.25  Aligned_cols=28  Identities=14%  Similarity=0.192  Sum_probs=25.2

Q ss_pred             eEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          149 QFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       149 ~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      +++|||-|-|.=++-++=.+|+++.+++
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~Lv   78 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLV   78 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEE
Confidence            7999999999999999999999998775

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=85.25  E-value=1.3  Score=34.28  Aligned_cols=34  Identities=12%  Similarity=0.329  Sum_probs=27.4

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ..+++..+ .....+|++||+|+|..+.-+++---
T Consensus        62 A~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~   95 (209)
T COG2518          62 ARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG   95 (209)
T ss_pred             HHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC
Confidence            44667777 77789999999999999988877544

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=85.14  E-value=1.1  Score=38.39  Aligned_cols=32  Identities=9%  Similarity=0.100  Sum_probs=25.6

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ++...+ .....+|+|+|+|.|..+..+++..|
T Consensus       230 ~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~  261 (426)
T TIGR00563       230 VATWLA-PQNEETILDACAAPGGKTTHILELAP  261 (426)
T ss_pred             HHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcC
Confidence            334444 44557999999999999999999987

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=84.84  E-value=2.6  Score=33.88  Aligned_cols=38  Identities=13%  Similarity=0.123  Sum_probs=28.7

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      .++-...|+|. -.+|+|+|.|.|..+-++.+.+|++.-
T Consensus        23 ~El~~r~p~f~-P~~vLD~GsGpGta~wAa~~~~~~~~~   60 (274)
T PF09243_consen   23 SELRKRLPDFR-PRSVLDFGSGPGTALWAAREVWPSLKE   60 (274)
T ss_pred             HHHHHhCcCCC-CceEEEecCChHHHHHHHHHHhcCcee
Confidence            44544555343 358999999999999999999996653

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=84.68  E-value=2  Score=35.42  Aligned_cols=32  Identities=9%  Similarity=-0.016  Sum_probs=24.2

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      ..+++... +.+..+|+|+|||+|.++.+.+..
T Consensus       172 ~~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~  203 (329)
T TIGR01177       172 RAMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM  203 (329)
T ss_pred             HHHHHHhC-CCCcCEEEECCCCCCHHHHHHHHh
Confidence            44444445 666779999999999999887664

This family is found exclusively in the Archaea.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=84.60  E-value=1.3  Score=36.25  Aligned_cols=26  Identities=27%  Similarity=0.197  Sum_probs=23.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCC
Q 037090          146 RLNQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      ...+||||.||+|.+...+++++|..
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~  160 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPER  160 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCC
Confidence            44689999999999999999999984

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=84.34  E-value=1.7  Score=34.98  Aligned_cols=56  Identities=13%  Similarity=0.189  Sum_probs=39.3

Q ss_pred             chhhhhccChHHHHHHHHHHHhhhH----HhHHHHHHhcCCCCCCCeEEEecCCccHHHH
Q 037090          107 DGFAVAAKDEKINNLFNQSMHNHTT----IVMKEILETYKGFERLNQFVDVADGLGENKN  162 (178)
Q Consensus       107 ~~~e~~~~~p~~~~~F~~~M~~~~~----~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~  162 (178)
                      ..++.+.++|.....|+.+.+....    ...+.+++.+..-++...|-|+|||.+.++.
T Consensus       137 ~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~  196 (325)
T KOG3045|consen  137 EAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS  196 (325)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh
Confidence            4567788999888888887766432    1235556555423556789999999998875

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=84.19  E-value=1.1  Score=35.77  Aligned_cols=38  Identities=11%  Similarity=0.017  Sum_probs=29.4

Q ss_pred             HHHHHhcC-CCCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          135 KEILETYK-GFERLNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       135 ~~~~~~~~-~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      +..+..++ .|-+.+.++||||-.|.++..|++.|-..+
T Consensus        46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~   84 (288)
T KOG2899|consen   46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRR   84 (288)
T ss_pred             ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccce
Confidence            44555555 366678899999999999999999986543

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=83.10  E-value=1.5  Score=36.82  Aligned_cols=24  Identities=13%  Similarity=0.188  Sum_probs=20.9

Q ss_pred             CeEEEecCCccHHHHHHHHhcCCC
Q 037090          148 NQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       148 ~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      ..++|+++|+|.++..+++...++
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~~v  231 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFRRV  231 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCCEE
Confidence            469999999999999999887644

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=82.85  E-value=0.82  Score=35.97  Aligned_cols=32  Identities=19%  Similarity=0.301  Sum_probs=20.9

Q ss_pred             HHHHHHhcCCCC--CCCeEEEecCCccHHHHHHHH
Q 037090          134 MKEILETYKGFE--RLNQFVDVADGLGENKNILLT  166 (178)
Q Consensus       134 ~~~~~~~~~~~~--~~~~vVDVGGg~G~~~~~i~~  166 (178)
                      ....++..+ +.  ....|+|||||+|.-+..+..
T Consensus        37 ~eRaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~   70 (270)
T KOG1541|consen   37 AERALELLA-LPGPKSGLILDIGCGSGLSGSVLSD   70 (270)
T ss_pred             HHHHHHHhh-CCCCCCcEEEEeccCCCcchheecc
Confidence            333444444 33  367999999999987665543

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=82.14  E-value=2.2  Score=31.83  Aligned_cols=27  Identities=11%  Similarity=0.054  Sum_probs=20.4

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      ...++|+++|+|.|..++.+++.++..
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~   70 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAA   70 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-S
T ss_pred             cCCceEEEECCccchhHHHHHhccCCc
Confidence            445799999999999999999985433

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=82.14  E-value=2  Score=36.47  Aligned_cols=26  Identities=31%  Similarity=0.450  Sum_probs=22.9

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          144 FERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      |.+.+.+||||.|.|+++.-+.-.|-
T Consensus       151 f~gi~~vvD~GaG~G~LSr~lSl~y~  176 (476)
T KOG2651|consen  151 FTGIDQVVDVGAGQGHLSRFLSLGYG  176 (476)
T ss_pred             hcCCCeeEEcCCCchHHHHHHhhccC
Confidence            78899999999999999998876664

>PTZ00146 fibrillarin; Provisional

Probab=81.20  E-value=1.7  Score=35.51  Aligned_cols=33  Identities=6%  Similarity=0.076  Sum_probs=25.5

Q ss_pred             HHHHhcCC--CCCCCeEEEecCCccHHHHHHHHhc
Q 037090          136 EILETYKG--FERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       136 ~~~~~~~~--~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      .++...+.  +....+|+|+|+|+|..+..+++..
T Consensus       120 ~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiV  154 (293)
T PTZ00146        120 AIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLV  154 (293)
T ss_pred             HHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHh
Confidence            34444441  5666799999999999999999886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	178
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		2e-31
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		7e-31
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		1e-28
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		1e-16
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		1e-14

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 114/225 (50%), Gaps = 60/225 (26%)
Query: 9   QVMMKPARDEQDFLLAMELASGTILPMTIKSAIE-------------------------- 42
           Q++   + DE+  L AM+LAS  +LPM +K+AIE                          
Sbjct: 10  QIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQL 69
Query: 43  ----------LDR---------------------SVQRLYGLAPVSKYFVPNEEGVSLAP 71
                     LDR                      V+RLYGLAPV K+   NE+GVSLAP
Sbjct: 70  PTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAP 129
Query: 72  TLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTT 131
            LL+  DKV ++ W  +KDA+LEG +PF KA+ GM+ F     D +IN +FN+ M +++T
Sbjct: 130 FLLLATDKVLLEPWFYLKDAILEGGIPFNKAY-GMNIFDYHGTDHRINKVFNKGMSSNST 188
Query: 132 IVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI 176
           I MK+ILE Y GFE L   VDV  G G   ++++ K    S+N I
Sbjct: 189 ITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYP--SINAI 231

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  129 bits (325), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 69/145 (47%), Positives = 94/145 (64%), Gaps = 3/145 (2%)
Query: 27  LASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWS 86
           LA   IL  ++++  + D  VQRLYGLA V+KY V NE+GVS++   L+ QDKV M+SW 
Sbjct: 84  LACYIILTCSVRT--QQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWY 141
Query: 87  CVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFER 146
            +KDA+L+G +PF KA+ GM  F     D + N +FN+ M +H+TI MK+ILETY GFE 
Sbjct: 142 HLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEG 200
Query: 147 LNQFVDVADGLGENKNILLTKISII 171
           L   VDV  G G   N +++K   I
Sbjct: 201 LKSLVDVGGGTGAVINTIVSKYPTI 225

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 101/203 (49%), Gaps = 57/203 (28%)
Query: 12  MKPARDEQDFLLAMELASGTILPMTIKSAIEL---------------------------- 43
           M  + DE   + A++LAS ++LPMT+K+AIEL                            
Sbjct: 12  MAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAAN 71
Query: 44  -------DRSVQRL---------------------YGLAPVSKYFVPNEEGVSLAPTLLI 75
                  DR ++ L                     YG APV K+  PNE+GVS+A   L+
Sbjct: 72  PEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALM 131
Query: 76  IQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMK 135
            QDKV M+SW  +KDA+L+G +PF KA+ GM  F     D + N +FN+ M NH+ I+ K
Sbjct: 132 NQDKVLMESWYYLKDAVLDGGIPFNKAY-GMSAFEYHGTDPRFNRVFNEGMKNHSIIITK 190
Query: 136 EILETYKGFERLNQFVDVADGLG 158
           ++LE Y GFE L   VDV  G+G
Sbjct: 191 KLLELYHGFEGLGTLVDVGGGVG 213

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 2/145 (1%)
Query: 27  LASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWS 86
           LAS ++L  T ++ IE D   +R+YGL+ V KY VP+E    LA     +     +  W 
Sbjct: 92  LASYSVLTSTTRT-IE-DGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWM 149
Query: 87  CVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFER 146
             K+A+++  +   K  +G+  +    KD+K+N +FN+SM +     MK +LE Y GFE 
Sbjct: 150 NFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEG 209
Query: 147 LNQFVDVADGLGENKNILLTKISII 171
           ++  VDV  G G N  ++++K  +I
Sbjct: 210 ISTLVDVGGGSGRNLELIISKYPLI 234

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
Query: 28  ASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSC 87
           AS ++L  T ++ IE D   +R+YGL+ V KY VP+E    LA     +     +  W  
Sbjct: 93  ASYSVLTSTTRT-IE-DGGAERVYGLSXVGKYLVPDESRGYLASFTTFLCYPALLQVWXN 150
Query: 88  VKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERL 147
            K+A+++  +   K  +G+  +    KD+K N +FN+S  +      K  LE Y GFE +
Sbjct: 151 FKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRXLEIYTGFEGI 210
Query: 148 NQFVDVADGLGENKNILLTKISII 171
           +  VDV  G G N  ++++K  +I
Sbjct: 211 STLVDVGGGSGRNLELIISKYPLI 234

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	178
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	5e-35
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	9e-31
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	2e-04
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	6e-29
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	6e-28
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	8e-28
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	8e-28
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	1e-27
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	7e-27
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	2e-26
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	9e-04
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	5e-26
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	5e-21
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	2e-16
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	2e-15
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	4e-15
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	6e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  124 bits (314), Expect = 5e-35
 Identities = 78/223 (34%), Positives = 111/223 (49%), Gaps = 58/223 (26%)

Query: 2   SSLQDDHQVMMKPARDEQDFLLAMELASGTILPMTIKSAIELD----------------- 44
           S+   + Q++   + DE+  L AM+LAS  +LPM +K+AIELD                 
Sbjct: 3   STGNAEIQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISP 62

Query: 45  ---------------RSVQRL-------------------------YGLAPVSKYFVPNE 64
                            + R+                         YGLAPV K+   NE
Sbjct: 63  AEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNE 122

Query: 65  EGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQ 124
           +GVSLAP LL+  DKV ++ W  +KDA+LEG +PF KA+ GM+ F     D +IN +FN+
Sbjct: 123 DGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAY-GMNIFDYHGTDHRINKVFNK 181

Query: 125 SMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTK 167
            M +++TI MK+ILE Y GFE L   VDV  G G   ++++ K
Sbjct: 182 GMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAK 224

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  113 bits (285), Expect = 9e-31
 Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 3/141 (2%)

Query: 27  LASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWS 86
           LAS  ++  T       D  + R YG APV K+  PNE+GVS+A   L+ QDKV M+SW 
Sbjct: 85  LASYNVV--TCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWY 142

Query: 87  CVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFER 146
            +KDA+L+G +PF KA+ GM  F     D + N +FN+ M NH+ I+ K++LE Y GFE 
Sbjct: 143 YLKDAVLDGGIPFNKAY-GMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEG 201

Query: 147 LNQFVDVADGLGENKNILLTK 167
           L   VDV  G+G     +   
Sbjct: 202 LGTLVDVGGGVGATVAAIAAH 222

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 4/44 (9%)

Query: 1  MSSLQDDHQVMMKPARDEQDFLLAMELASGTILPMTIKSAIELD 44
          M S   D    M  + DE   + A++LAS ++LPMT+K+AIEL 
Sbjct: 5  MGSTAAD----MAASADEDACMFALQLASSSVLPMTLKNAIELG 44

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  108 bits (272), Expect = 6e-29
 Identities = 27/198 (13%), Positives = 48/198 (24%), Gaps = 45/198 (22%)

Query: 3   SLQDDHQVMMKPARDE---QDFLLAMELASGTILPMTIKSAIELD--------------- 44
           S     +   +   D    Q  L   E A G      +++A  +                
Sbjct: 2   SHMQRQRPPSRAGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVDGPRTPAEL 61

Query: 45  --------RSVQRL----------------YGLAPVSKYFVPNEEGVSLAPTLLIIQDKV 80
                    +++R+                + L         +   V     +L+  D +
Sbjct: 62  AAATGTDADALRRVLRLLAVRDVVRESDGRFALTDKGAALRSDS-PVPARAGILMFTDTM 120

Query: 81  NMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILET 140
                  V  AL      F     G    A    D ++  L+ + M   +      +   
Sbjct: 121 FWTMSHRVASALGPERPAFADIF-GSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARA 179

Query: 141 YKGFERLNQFVDVADGLG 158
              F       DV  G G
Sbjct: 180 G-DFPATGTVADVGGGRG 196

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  106 bits (266), Expect = 6e-28
 Identities = 28/185 (15%), Positives = 56/185 (30%), Gaps = 44/185 (23%)

Query: 15  ARDEQDFLLAMELASGTILPMTIKSAIELD-----------------------RSVQRL- 50
           A          ++  G      I  A+EL                        ++++RL 
Sbjct: 33  AARAAAEETVNDILQGAWKARAIHVAVELGVPELLQEGPRTATALAEATGAHEQTLRRLL 92

Query: 51  -----------------YGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALL 93
                            +    +S   +P+     +A          +  +W  +  ++ 
Sbjct: 93  RLLATVGVFDDLGHDDLFAQNALSAVLLPDP-ASPVATDARFQAAPWHWRAWEQLTHSVR 151

Query: 94  EGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDV 153
            G   F  A+ G   + +  +D K   LFN++M + +     ++   Y  F      VD+
Sbjct: 152 TGEASFDVAN-GTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDI 209

Query: 154 ADGLG 158
             G G
Sbjct: 210 GGGRG 214

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  105 bits (264), Expect = 8e-28
 Identities = 38/206 (18%), Positives = 69/206 (33%), Gaps = 54/206 (26%)

Query: 1   MSSLQDDHQVMMKPARDEQDFLLAMELASGTILPMTIKSAIELD---------------- 44
           M+S  +  +    P+   +   L  +     I  M++K A+E++                
Sbjct: 1   MASSINGRK----PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSN 56

Query: 45  ------------RSVQRL-------------------YGLAPVSKYFVPNEEGVSLAPTL 73
                        +V+RL                   Y L   S+  V   +   LAP +
Sbjct: 57  LVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDL-CLAPMV 115

Query: 74  LIIQDKVNMDSWSCVKDALLEG-LVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTI 132
             + D     S+  +K  + E  L  F     G   +    K+ + N  FN +M + + +
Sbjct: 116 ECVLDPTLSGSYHELKKWIYEEDLTLFGVTL-GSGFWDFLDKNPEYNTSFNDAMASDSKL 174

Query: 133 VMKEILETYKGFERLNQFVDVADGLG 158
           +   + +    F+ L   VDV  G G
Sbjct: 175 INLALRDCDFVFDGLESIVDVGGGTG 200

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  105 bits (265), Expect = 8e-28
 Identities = 21/189 (11%), Positives = 50/189 (26%), Gaps = 44/189 (23%)

Query: 12  MKPARDEQDFLLAMELASGTILPMTIKSAIELD-----------------------RSVQ 48
                 +QD  + ++     + PM ++ A  L                        +++ 
Sbjct: 8   EPLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLAGADTLAGLADRTDTHPQALS 67

Query: 49  RL-------------------YGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVK 89
           RL                        +             A   L         +++ + 
Sbjct: 68  RLVRHLTVVGVLEGGEKQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLL 127

Query: 90  DALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQ 149
           D +  G   +   + G   +   + D  + + F+  M     +  +   + Y  +  +  
Sbjct: 128 DVVRTGRPAYAGRY-GRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRH 185

Query: 150 FVDVADGLG 158
            +DV  G G
Sbjct: 186 VLDVGGGNG 194

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  105 bits (263), Expect = 1e-27
 Identities = 26/186 (13%), Positives = 50/186 (26%), Gaps = 43/186 (23%)

Query: 14  PARDEQ-DFLLAMELASGTILPMTIKSAIELD-----------------------RSVQR 49
            AR +Q D L  +        PM +++A  L                         ++ R
Sbjct: 12  AARPQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHILAGARTVKALAARTDTRPEALLR 71

Query: 50  L-----------------YGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDAL 92
           L                 +    V +    +      A   L         S++ + DA+
Sbjct: 72  LIRHLVAIGLLEEDAPGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAI 131

Query: 93  LEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVD 152
             G   +   + G   +   A    +   F+  +     +        Y  +  +   +D
Sbjct: 132 RTGRPTYESIY-GKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAY-DWTNVRHVLD 189

Query: 153 VADGLG 158
           V  G G
Sbjct: 190 VGGGKG 195

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  102 bits (257), Expect = 7e-27
 Identities = 24/181 (13%), Positives = 48/181 (26%), Gaps = 42/181 (23%)

Query: 18  EQDFLLAMELASGTILPMTIKSAIELD-----------------------RSVQRL---- 50
           ++   + +   +    PM ++ A  L                         S+ RL    
Sbjct: 3   KRAAHIGLRALADLATPMAVRVAATLRVADHIAAGHRTAAEIASAAGAHADSLDRLLRHL 62

Query: 51  -------------YGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLV 97
                        YGL    +    +          +          +  +  ++  G  
Sbjct: 63  VAVGLFTRDGQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQP 122

Query: 98  PFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGL 157
            +   + G   +     D  ++  F+  M +H  +    I   Y  +  L   VDV  G 
Sbjct: 123 AYPVRY-GTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-WAALGHVVDVGGGS 180

Query: 158 G 158
           G
Sbjct: 181 G 181

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  102 bits (255), Expect = 2e-26
 Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 4/142 (2%)

Query: 27  LASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWS 86
           LAS ++L  T  +    D   +R+YGL+ V KY VP+E    LA     +     +  W 
Sbjct: 92  LASYSVL--TSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWM 149

Query: 87  CVKDALL-EGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFE 145
             K+A++ E +  F   H G+  +    KD+K+N +FN+SM +     MK +LE Y GFE
Sbjct: 150 NFKEAVVDEDIDLFKNVH-GVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFE 208

Query: 146 RLNQFVDVADGLGENKNILLTK 167
            ++  VDV  G G N  ++++K
Sbjct: 209 GISTLVDVGGGSGRNLELIISK 230

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score = 37.9 bits (88), Expect = 9e-04
 Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 2  SSLQDDHQVMMKPAR--DEQDFLLAMELASGTILPMTIKSAIELD 44
          S +  +   +   +   ++   L AM L +  + P  + +AI+L+
Sbjct: 4  SYITKEDNQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLN 48

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  100 bits (251), Expect = 5e-26
 Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 6/136 (4%)

Query: 27  LASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWS 86
           L        TI    E D   +  Y L P SK  +  +    L+  +       ++D WS
Sbjct: 72  LTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPT-CLSSIVKGALHPSSLDMWS 130

Query: 87  CVKDALLEG--LVPFMKAHNGMDGFAVAAKDEKINNL--FNQSMHNHTTIVMKEILETYK 142
             K    E      F  A  G   +    KD + + L  F  +M + + +    + E  +
Sbjct: 131 SSKKWFNEDKEQTLFECAT-GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKR 189

Query: 143 GFERLNQFVDVADGLG 158
            FE L   VDV  G G
Sbjct: 190 VFEGLESLVDVGGGTG 205

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score = 86.9 bits (216), Expect = 5e-21
 Identities = 32/182 (17%), Positives = 51/182 (28%), Gaps = 47/182 (25%)

Query: 17  DEQDFLLAMELASGTILPMTIKSAIELD-----------------------RSVQRL--- 50
           +       +++ +G      +  A  L                          + RL   
Sbjct: 5   NLAAARNLIQVVTGEWKSRCVYVATRLGLADLIESGIDSDETLAAAVGSDAERIHRLMRL 64

Query: 51  --------------YGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGL 96
                         Y   P S      E   S    +L   ++    +W+   +ALL G 
Sbjct: 65  LVAFEIFQGDTRDGYANTPTSHLLRDVEG--SFRDMVLFYGEEF-HAAWTPACEALLSGT 121

Query: 97  VPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADG 156
             F  A  G D ++   +       F  +M   + +   EI      F R   FVDV  G
Sbjct: 122 PGFELAF-GEDFYSYLKRCPDAGRRFLLAMK-ASNLAFHEIPRLL-DF-RGRSFVDVGGG 177

Query: 157 LG 158
            G
Sbjct: 178 SG 179

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 25/196 (12%), Positives = 55/196 (28%), Gaps = 50/196 (25%)

Query: 7   DHQVMMKPARDEQDFLLAMELASGTILPMTIKSAIELD---------------------- 44
             +   +     +   LA E+A G ++    +  ++                        
Sbjct: 2   SLRYTKEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTG 61

Query: 45  ---RSVQRL----------------YGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSW 85
               + Q L                Y LA    + + +     +A   +     VN    
Sbjct: 62  LTRYAAQVLLEASLTIGTILLEEDRYVLAKAGWFLLND----KMARVNMEFNHDVNYQGL 117

Query: 86  SCVKDALLEGLVPFMKAHNGMDGF---AVAAKDEKINNLFNQSMHNHTTIVMKEILETYK 142
             +++ALL G    +K   G        ++   E++   +    H ++     + LE   
Sbjct: 118 FHLEEALLNGRPEGLKVF-GEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIV- 175

Query: 143 GFERLNQFVDVADGLG 158
                 + +D+    G
Sbjct: 176 FSHHPKRLLDIGGNTG 191

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 19/173 (10%), Positives = 48/173 (27%), Gaps = 45/173 (26%)

Query: 25  MELASGTILPMTIKSAIELD-----------------------RSVQRL----------- 50
               +       IK+A+EL+                       R ++ L           
Sbjct: 11  FNTVNAYQRSAAIKAAVELNVFTAISQGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMT 70

Query: 51  -----YGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNG 105
                Y L   S  F+  +    +   +  +   +  + ++ +  A+L+G          
Sbjct: 71  KQAEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAISSEG-- 128

Query: 106 MDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLG 158
                      +     +  M N   ++ + + E      ++   +D++   G
Sbjct: 129 -TLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKV---LDISASHG 177

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score = 70.5 bits (173), Expect = 4e-15
 Identities = 33/199 (16%), Positives = 58/199 (29%), Gaps = 50/199 (25%)

Query: 2   SSLQDDHQVMMKPARDEQDFLLAMELA-SGTILPMTIKSAIELD---------------- 44
           S L      MM        +  A EL   G I    +K+AIELD                
Sbjct: 12  SGLVPRGSHMMSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAEGPKDLATLA 71

Query: 45  -------RSVQRL----------------YGLAPVSKYFV-PNEEGVSLAPTLLIIQDKV 80
                    ++ L                + L   + Y   P  +  +L  T +      
Sbjct: 72  ADTGSVPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAF 131

Query: 81  NMDS-WSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILE 139
             D  +  +  A+           N            + N  F +   ++    ++ +LE
Sbjct: 132 LADDFYMGLSQAVRGQ-------KNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLE 184

Query: 140 TYKGFERLNQFVDVADGLG 158
             K  + + + +DV  G+G
Sbjct: 185 EAK-LDGVKKMIDVGGGIG 202

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score = 67.4 bits (165), Expect = 6e-14
 Identities = 21/187 (11%), Positives = 48/187 (25%), Gaps = 49/187 (26%)

Query: 11  MMKPARDEQDFLLAMELASGTILPMTIKSAIELD----------------------RSVQ 48
             +        +  ++L+        +  A+                             
Sbjct: 15  STEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQTGRTPAEVAASFGMVEGKAA 74

Query: 49  RL----------------YGLAPVS-KYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDA 91
            L                +    ++ +Y         + P +      +  D+W  + + 
Sbjct: 75  ILLHALAALGLLTKEGDAFRNTALTERYLTTTSAD-YIGPIVEH--QYLQWDNWPRLGEI 131

Query: 92  LLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFV 151
           L        K        +  A D +  + FN +M   +  ++  + E    F R    +
Sbjct: 132 LRSE-----KPL-AFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSELG-VFARARTVI 184

Query: 152 DVADGLG 158
           D+A G G
Sbjct: 185 DLAGGHG 191

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 53/188 (28%)

Query: 2   SSLQDDHQVMMKPARDEQDFLLAMELASGTILPMTIKSAIELDRSVQRLYGLAPV-SKYF 60
             L+ +++ +M P + E               P  +       R   RLY    V +KY 
Sbjct: 85  EVLRINYKFLMSPIKTE------------QRQPSMMTRMYIEQRD--RLYNDNQVFAKYN 130

Query: 61  VPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVP--FMKAHNGMDGF------AVA 112
           V   +          ++          ++ ALLE L P   +    G+ G          
Sbjct: 131 VSRLQ--------PYLK----------LRQALLE-LRPAKNVLID-GVLGSGKTWVALDV 170

Query: 113 AKDEKINNLFNQSMH-------NHTTIVMKEILET--YKGFERLNQFVDVADGLGENKNI 163
               K+    +  +        N    V+ E+L+   Y+         D +  +    + 
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 164 LLTKISII 171
           +  ++  +
Sbjct: 230 IQAELRRL 237

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	178
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.94
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.93
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.93
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.92
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.91
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.9
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.9
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.9
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.9
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.88
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.87
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.85
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.83
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.8
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.8
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.75
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	97.34
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	96.99
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	96.95
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	96.91
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.76
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	96.75
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	96.71
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	96.62
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.6
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	96.59
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	96.58
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	96.58
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	96.58
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	96.57
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	96.56
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	96.56
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	96.54
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	96.48
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	96.47
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	96.44
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	96.43
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	96.43
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	96.37
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	96.31
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	96.31
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	96.3
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.27
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	96.24
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	96.23
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	96.23
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	96.23
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	96.22
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	96.22
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	96.19
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.18
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.17
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	96.14
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	96.13
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	96.12
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.09
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	96.08
3f4k_A	257	Putative methyltransferase; structural genomics, P	96.08
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	96.07
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	96.06
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	96.06
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	96.0
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	95.99
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	95.99
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	95.99
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	95.93
3cc8_A	230	Putative methyltransferase; structural genomics, j	95.92
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	95.88
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	95.86
2b3t_A	276	Protein methyltransferase HEMK; translation termin	95.86
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	95.85
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	95.83
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	95.8
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	95.8
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	95.79
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	95.79
3ege_A	261	Putative methyltransferase from antibiotic biosyn	95.75
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	95.75
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	95.73
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	95.72
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	95.66
2p7i_A	250	Hypothetical protein; putative methyltransferase,	95.64
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	95.63
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	95.63
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	95.62
2esr_A	177	Methyltransferase; structural genomics, hypothetic	95.61
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	95.6
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	95.6
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	95.6
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	95.59
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	95.57
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	95.55
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	95.54
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	95.54
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	95.5
1ws6_A	171	Methyltransferase; structural genomics, riken stru	95.49
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	95.46
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	95.45
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	95.44
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	95.44
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	95.37
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	95.35
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	95.3
2h00_A	254	Methyltransferase 10 domain containing protein; st	95.29
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	95.26
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	95.24
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	95.24
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	95.23
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	95.22
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	95.19
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	95.19
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	95.18
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	95.12
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	95.12
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	95.1
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	95.07
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	95.05
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	95.04
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	95.01
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	94.99
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	94.96
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	94.96
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	94.95
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	94.94
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	94.87
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	94.87
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	94.85
3lpm_A	259	Putative methyltransferase; structural genomics, p	94.83
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	94.79
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	94.75
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	94.75
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	94.72
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	94.69
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	94.67
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	94.66
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	94.66
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	94.61
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	94.58
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	94.55
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	94.55
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	94.53
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	94.51
2o07_A	304	Spermidine synthase; structural genomics, structur	94.47
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	94.46
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	94.35
2pt6_A	321	Spermidine synthase; transferase, structural genom	94.35
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	94.34
2b25_A	336	Hypothetical protein; structural genomics, methyl	94.33
2i7c_A	283	Spermidine synthase; transferase, structural genom	94.32
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	94.29
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	94.28
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	94.26
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	94.26
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	94.25
3ocj_A	305	Putative exported protein; structural genomics, PS	94.24
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	94.23
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	94.21
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	94.19
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	94.17
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	94.16
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	94.14
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	94.11
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	94.1
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	94.09
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	94.09
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	94.02
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	94.02
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	94.01
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	94.0
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	93.95
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	93.91
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	93.86
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	93.81
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	93.7
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	93.65
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	93.61
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	93.6
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	93.57
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	93.5
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	93.46
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	93.38
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	93.37
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	93.32
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	93.26
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	93.24
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	93.16
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	93.12
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	93.06
3lcc_A	235	Putative methyl chloride transferase; halide methy	92.96
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	92.96
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	92.92
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	92.86
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	92.79
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	92.73
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	92.7
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	92.59
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	92.41
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	92.4
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	92.34
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	92.22
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	92.21
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	92.19
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	92.11
2frn_A	278	Hypothetical protein PH0793; structural genomics,	92.09
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	91.9
2qm3_A	373	Predicted methyltransferase; putative methyltransf	91.83
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	91.71
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	91.64
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	91.5
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	90.86
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	90.25
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	90.01
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	89.79
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	89.44
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	89.4
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	89.31
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	89.17
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	89.07
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	88.81
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	88.73
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	88.68
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	88.12
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	87.84
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	87.78
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	87.62
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	87.43
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	87.07
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	87.01
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	86.77
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	86.34
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	86.32
3sso_A	419	Methyltransferase; macrolide, natural product, ros	85.96
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	85.62
3ll7_A	410	Putative methyltransferase; methytransferase, stru	85.36
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	85.29
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	85.29
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	84.53
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	84.01
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	83.08
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	82.98
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	82.0
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	81.7
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	81.0
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	80.51
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	80.2
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	80.16

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.94  E-value=6.4e-26  Score=186.65  Aligned_cols=156  Identities=16%  Similarity=0.273  Sum_probs=137.9

Q ss_pred             cHHHHHHHHHHHhhHHHHHHHHHHHhC-----------------------------C----------------CCCCcee
Q 037090           18 EQDFLLAMELASGTILPMTIKSAIELD-----------------------------R----------------SVQRLYG   52 (178)
Q Consensus        18 ~~~~~~l~~~~~g~~~s~~L~~a~elg-----------------------------R----------------~~~~~y~   52 (178)
                      ......|.+++.||+.|++|++|+|||                             |                ..+++|+
T Consensus         6 ~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~   85 (353)
T 4a6d_A            6 DQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETRGGKAFYR   85 (353)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEeccCccceee
Confidence            467788999999999999999999999                             1                1245799


Q ss_pred             cchhcc-ccCCCCCCCChHHHHHHhcChhhhhhhhhHHHHHhcCCcchhhhcc--CCchhhhhccChHHHHHHHHHHHhh
Q 037090           53 LAPVSK-YFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHN--GMDGFAVAAKDEKINNLFNQSMHNH  129 (178)
Q Consensus        53 ~t~~s~-~L~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~l~~g~~~f~~a~~--g~~~~e~~~~~p~~~~~F~~~M~~~  129 (178)
                      +|++++ +|.+++|. ++++++.+. .+..++.|.+|.+++++|+++|+.+++  ..++|+++.++|+....|+++|...
T Consensus        86 ~t~~s~~~l~~~~~~-~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~  163 (353)
T 4a6d_A           86 NTELSSDYLTTVSPT-SQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQEV  163 (353)
T ss_dssp             ECHHHHHHHSTTSTT-CCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHhhcCCch-HHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            999997 56677764 888888875 456789999999999999999999983  2578999999999999999999999


Q ss_pred             hHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          130 TTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      +....+.+++.+| |++..+|||||||+|.++.+++++||+++++++
T Consensus       164 ~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~  209 (353)
T 4a6d_A          164 WSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVF  209 (353)
T ss_dssp             HHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEE
T ss_pred             HHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEec
Confidence            9888899999999 999999999999999999999999999999876

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.93  E-value=3.6e-25  Score=182.84  Aligned_cols=163  Identities=44%  Similarity=0.745  Sum_probs=145.2

Q ss_pred             CCccccHHHHHHHHHHHhhHHHHHHHHHHHhC--------------------C---------------------------
Q 037090           13 KPARDEQDFLLAMELASGTILPMTIKSAIELD--------------------R---------------------------   45 (178)
Q Consensus        13 ~~~~~~~~~~~l~~~~~g~~~s~~L~~a~elg--------------------R---------------------------   45 (178)
                      ..++..+.+..+++++.+++.+++|++|+|||                    +                           
T Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~   92 (364)
T 3p9c_A           13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVT   92 (364)
T ss_dssp             CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEE
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEE
Confidence            45667888999999999999999999999999                    0                           


Q ss_pred             CC---------CCceecchhccccCCCCCCCChHHHHHHhcChhhhhhhhhHHHHHhcCCcchhhhccCCchhhhhccCh
Q 037090           46 SV---------QRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDE  116 (178)
Q Consensus        46 ~~---------~~~y~~t~~s~~L~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~p  116 (178)
                      ..         +++|++|+.|+.|+.+....++++++.+..++.+++.|.+|++++++|.++|+.++ |.++|+|+.++|
T Consensus        93 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~-g~~~~~~~~~~~  171 (364)
T 3p9c_A           93 CLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAY-GMSAFEYHGTDP  171 (364)
T ss_dssp             EEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHH-SSCHHHHHTTCH
T ss_pred             EeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhc-CCCHHHHHHhCH
Confidence            01         35799999999887664224899998887788889999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          117 KINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       117 ~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      +..+.|+++|...+....+.+++.++++++..+|||||||+|.++..+++++|+++++++
T Consensus       172 ~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~  231 (364)
T 3p9c_A          172 RFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNF  231 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEe
Confidence            999999999999988888889999976888899999999999999999999999998765

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.93  E-value=3.9e-25  Score=181.28  Aligned_cols=158  Identities=16%  Similarity=0.116  Sum_probs=143.5

Q ss_pred             cccHHHHHHHHHHHhhHHHHHHHHHHHhC---------------------------C------------CCCCceecchh
Q 037090           16 RDEQDFLLAMELASGTILPMTIKSAIELD---------------------------R------------SVQRLYGLAPV   56 (178)
Q Consensus        16 ~~~~~~~~l~~~~~g~~~s~~L~~a~elg---------------------------R------------~~~~~y~~t~~   56 (178)
                      ...++...|++++.|++.+++|++|++||                           |            .++++|++|+.
T Consensus        18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~~~~~y~~t~~   97 (348)
T 3lst_A           18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVDGPRTPAELAAATGTDADALRRVLRLLAVRDVVRESDGRFALTDK   97 (348)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECTT
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEecCCEEecCHH
Confidence            34567888999999999999999999999                           1            35789999999


Q ss_pred             ccccCCCCCCCChHHHHHHhcChhhhhhhhhHHHHHhcCCcchhhhccCCchhhhhccChHHHHHHHHHHHhhhHHhHHH
Q 037090           57 SKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKE  136 (178)
Q Consensus        57 s~~L~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~  136 (178)
                      |+.|+++++. ++++++.+..++.++++|.+|++++++|.++|+.++ |.++|+|+.++|+..+.|+.+|...+....+.
T Consensus        98 s~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~-g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~  175 (348)
T 3lst_A           98 GAALRSDSPV-PARAGILMFTDTMFWTMSHRVASALGPERPAFADIF-GSSLDAYFDGDAEVEALYYEGMETVSAAEHLI  175 (348)
T ss_dssp             TGGGSTTSSS-CSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHH-SSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHhcCCCc-cHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHh-CCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHH
Confidence            9999887764 789998887777788999999999999999999999 88899999999999999999999999888889


Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      +++.++ +++..+|||||||+|.++..+++++|+++++.+
T Consensus       176 ~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~  214 (348)
T 3lst_A          176 LARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLL  214 (348)
T ss_dssp             HHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEE
T ss_pred             HHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEe
Confidence            999999 999999999999999999999999999988764

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.92  E-value=1.1e-24  Score=180.16  Aligned_cols=163  Identities=48%  Similarity=0.793  Sum_probs=142.6

Q ss_pred             CCccccHHHHHHHHHHHhhHHHHHHHHHHHhC------------------------------------C-----------
Q 037090           13 KPARDEQDFLLAMELASGTILPMTIKSAIELD------------------------------------R-----------   45 (178)
Q Consensus        13 ~~~~~~~~~~~l~~~~~g~~~s~~L~~a~elg------------------------------------R-----------   45 (178)
                      ...+..+....+++++.|++.+++|++|+|||                                    |           
T Consensus        14 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll   93 (368)
T 3reo_A           14 THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVV   93 (368)
T ss_dssp             ---CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSE
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCe
Confidence            44567888999999999999999999999998                                    0           


Q ss_pred             --C----C----CCceecchhccccCCCCCCCChHHHHHHhcChhhhhhhhhHHHHHhcCCcchhhhccCCchhhhhccC
Q 037090           46 --S----V----QRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKD  115 (178)
Q Consensus        46 --~----~----~~~y~~t~~s~~L~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~  115 (178)
                        .    +    +++|++|+.|+.|+.+....++++++.+..++.+++.|.+|++++++|.++|+.++ |.++|+|+.++
T Consensus        94 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~-g~~~~~~~~~~  172 (368)
T 3reo_A           94 TYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAY-GMNIFDYHGTD  172 (368)
T ss_dssp             EEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHS-SSCHHHHHTTC
T ss_pred             EEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHh-CCCHHHHHhhC
Confidence              1    1    25799999999887654224899999887778889999999999999999999999 89999999999


Q ss_pred             hHHHHHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          116 EKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       116 p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      |+..+.|+++|...+....+.+++.++++++..+|||||||+|.++..+++++|+++++++
T Consensus       173 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~  233 (368)
T 3reo_A          173 HRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINF  233 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEE
Confidence            9999999999999988888889998876888899999999999999999999999998765

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.91  E-value=1.6e-23  Score=173.12  Aligned_cols=155  Identities=17%  Similarity=0.254  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhC---------------------------C-------------CCCCc-eecchhc
Q 037090           19 QDFLLAMELASGTILPMTIKSAIELD---------------------------R-------------SVQRL-YGLAPVS   57 (178)
Q Consensus        19 ~~~~~l~~~~~g~~~s~~L~~a~elg---------------------------R-------------~~~~~-y~~t~~s   57 (178)
                      .....|++++.+++.+++|++|+|||                           |             .+++. |++|++|
T Consensus        37 ~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~~~~~y~~t~~s  116 (369)
T 3gwz_A           37 AAEETVNDILQGAWKARAIHVAVELGVPELLQEGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDLFAQNALS  116 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTTEEECCHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeCCCceEecCHHH
Confidence            45777999999999999999999999                           1             35678 9999999


Q ss_pred             cccCCCCCCCChHHHHHHhcChhhhhhhhhHHHHHhcCCcchhhhccCCchhhhhccChHHHHHHHHHHHhhhHHhHHHH
Q 037090           58 KYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEI  137 (178)
Q Consensus        58 ~~L~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~  137 (178)
                      +.|+++++. ++++++.+..++..++.|.+|++++++|.++|+.++ |.++|+|+.++|+..+.|+.+|...+....+.+
T Consensus       117 ~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~-g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l  194 (369)
T 3gwz_A          117 AVLLPDPAS-PVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVAN-GTSFWQLTHEDPKARELFNRAMGSVSLTEAGQV  194 (369)
T ss_dssp             HTTSCCTTC-HHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHH-SSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCch-hHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhc-CCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHH
Confidence            999877764 789999887776678999999999999999999999 888999999999999999999999988888999


Q ss_pred             HHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          138 LETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       138 ~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      ++.++ +.+..+|||||||+|.++..+++++|+++++++
T Consensus       195 ~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~  232 (369)
T 3gwz_A          195 AAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLL  232 (369)
T ss_dssp             HHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred             HHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEE
Confidence            99999 998999999999999999999999999998765

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.90  E-value=6.2e-23  Score=166.83  Aligned_cols=151  Identities=22%  Similarity=0.305  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhC---------------------------C-------------CCCCceecchhcc
Q 037090           19 QDFLLAMELASGTILPMTIKSAIELD---------------------------R-------------SVQRLYGLAPVSK   58 (178)
Q Consensus        19 ~~~~~l~~~~~g~~~s~~L~~a~elg---------------------------R-------------~~~~~y~~t~~s~   58 (178)
                      .++..+++++.+++.+++|+++++||                           |             ++++.|++|++|+
T Consensus         7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~~~~y~~t~~s~   86 (334)
T 2ip2_A            7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIESGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYANTPTSH   86 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecCCCeEecCHHHH
Confidence            67788999999999999999999999                           1             2457999999999


Q ss_pred             ccCCCCCCCChHHHHHHhcChhhhhhhhhHHHHHhcCCcchhhhccCCchhhhhccChHHHHHHHHHHHhhhHHhHHHHH
Q 037090           59 YFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEIL  138 (178)
Q Consensus        59 ~L~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~  138 (178)
                      .|+ ++|. ++++++.+..++.. +.|.+|++++++|+++|+.++ |.++|+|+.++|+..+.|+++| ..+....+.++
T Consensus        87 ~l~-~~~~-~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~-g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~  161 (334)
T 2ip2_A           87 LLR-DVEG-SFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAF-GEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIP  161 (334)
T ss_dssp             TTS-SSTT-CSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHH-SSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHH
T ss_pred             HHh-CCCc-cHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhc-CCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHH
Confidence            888 6663 78999988766544 899999999999999999999 8899999999999999999999 88887788999


Q ss_pred             HhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          139 ETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       139 ~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      +.++ +++ .+|||||||+|.++..+++++|+++++.+
T Consensus       162 ~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~  197 (334)
T 2ip2_A          162 RLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVML  197 (334)
T ss_dssp             HHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEE
T ss_pred             HhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEe
Confidence            9998 888 99999999999999999999999987754

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.90  E-value=3.6e-23  Score=169.79  Aligned_cols=160  Identities=23%  Similarity=0.302  Sum_probs=142.4

Q ss_pred             CCccccHHHHHHHHHHHhhHHHHHHHHHHHhC--------------------------------C-------------C-
Q 037090           13 KPARDEQDFLLAMELASGTILPMTIKSAIELD--------------------------------R-------------S-   46 (178)
Q Consensus        13 ~~~~~~~~~~~l~~~~~g~~~s~~L~~a~elg--------------------------------R-------------~-   46 (178)
                      ++.+..++...+++++.+++.+++|++|++||                                |             . 
T Consensus         9 ~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~   88 (352)
T 1fp2_A            9 KPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIIT   88 (352)
T ss_dssp             CSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred             ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEec
Confidence            34667788899999999999999999999999                                1             2 


Q ss_pred             -CCCceecchhccccCCCCCCCChHHHHHHhcChhhhhhhhhHHHHHh-cCCcchhhhccCCchhhhhccChHHHHHHHH
Q 037090           47 -VQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALL-EGLVPFMKAHNGMDGFAVAAKDEKINNLFNQ  124 (178)
Q Consensus        47 -~~~~y~~t~~s~~L~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~l~-~g~~~f~~a~~g~~~~e~~~~~p~~~~~F~~  124 (178)
                       +++.|++|+.|+.|++++|. ++++++.+..++.++++|.+|+++++ +|.++|+.++ |.++|+|+.++|+....|+.
T Consensus        89 ~~~~~y~~t~~s~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~f~~  166 (352)
T 1fp2_A           89 KEEESYALTVASELLVRGSDL-CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTL-GSGFWDFLDKNPEYNTSFND  166 (352)
T ss_dssp             SSSEEEEECHHHHTTSTTSSS-CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHH-SSCHHHHHHHCHHHHHHHHH
T ss_pred             CCCCeEeCCHHHHHHhCCCCc-cHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHc-CCCHHHHHHhChHHHHHHHH
Confidence             25799999999999988773 89999988777778899999999999 8899999999 89999999999999999999


Q ss_pred             HHHhhhHHhHHHHHHhc--CCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          125 SMHNHTTIVMKEILETY--KGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       125 ~M~~~~~~~~~~~~~~~--~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      +|...+....+. ++.|  + +++..+|||||||+|.++..+++++|+++++++
T Consensus       167 ~m~~~~~~~~~~-~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~  218 (352)
T 1fp2_A          167 AMASDSKLINLA-LRDCDFV-FDGLESIVDVGGGTGTTAKIICETFPKLKCIVF  218 (352)
T ss_dssp             HHHHTHHHHHHH-HHTCHHH-HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred             HHHhcchhhhhH-HHhcccc-cccCceEEEeCCCccHHHHHHHHHCCCCeEEEe
Confidence            999988877677 8888  4 778889999999999999999999999987764

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.90  E-value=2.8e-23  Score=170.72  Aligned_cols=159  Identities=22%  Similarity=0.309  Sum_probs=140.8

Q ss_pred             ccccHHHHHHHHHHHhhHHHHHHHHHHHhC--------------------------------C-------------C---
Q 037090           15 ARDEQDFLLAMELASGTILPMTIKSAIELD--------------------------------R-------------S---   46 (178)
Q Consensus        15 ~~~~~~~~~l~~~~~g~~~s~~L~~a~elg--------------------------------R-------------~---   46 (178)
                      .+..++...|++++.+++.+++|++|++||                                |             .   
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~~   84 (358)
T 1zg3_A            5 SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVK   84 (358)
T ss_dssp             SCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEeccc
Confidence            467788889999999999999999999999                                1             2   


Q ss_pred             --C-----CCceecchhccccCCCCCCCChHHHHHHhcChhhhhhhhhHHHHHhcC--CcchhhhccCCchhhhhccChH
Q 037090           47 --V-----QRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEG--LVPFMKAHNGMDGFAVAAKDEK  117 (178)
Q Consensus        47 --~-----~~~y~~t~~s~~L~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~l~~g--~~~f~~a~~g~~~~e~~~~~p~  117 (178)
                        +     +++|++|+.|+.|+++++. ++++++.+..++.++++|.+|++++++|  .++|+.++ |.++|+|+.++|+
T Consensus        85 ~~~~~g~~~~~y~~t~~s~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~-g~~~~~~~~~~p~  162 (358)
T 1zg3_A           85 GKEGDEEEEIAYSLTPPSKLLISGKPT-CLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECAT-GESFWDFLNKDSE  162 (358)
T ss_dssp             CSSSSCCCEEEEEECHHHHTTCTTSTT-CCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHH-SSCHHHHHTSGGG
T ss_pred             ccccCCCCCCEEeCCHHHHHHhCCCCc-cHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHh-CCCHHHHHhcChh
Confidence              2     3689999999999888773 8999999877777889999999999998  78999999 8899999999999


Q ss_pred             HHH--HHHHHHHhhhHHhHHHHHHhcC-CCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          118 INN--LFNQSMHNHTTIVMKEILETYK-GFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       118 ~~~--~F~~~M~~~~~~~~~~~~~~~~-~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      ..+  .|+.+|...+.... .+++.|| .|.+..+|||||||+|.++..+++++|+++++++
T Consensus       163 ~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~  223 (358)
T 1zg3_A          163 SSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVF  223 (358)
T ss_dssp             HHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEE
T ss_pred             hhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEe
Confidence            999  99999999887766 7888883 2777889999999999999999999999998765

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.90  E-value=1.2e-23  Score=171.21  Aligned_cols=153  Identities=18%  Similarity=0.218  Sum_probs=135.9

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhC---------------------------C-------------CCCCceecchhcccc
Q 037090           21 FLLAMELASGTILPMTIKSAIELD---------------------------R-------------SVQRLYGLAPVSKYF   60 (178)
Q Consensus        21 ~~~l~~~~~g~~~s~~L~~a~elg---------------------------R-------------~~~~~y~~t~~s~~L   60 (178)
                      +..|++++.|++.+++|++|+|||                           |             .++++|.+|++|+.|
T Consensus         6 ~~~l~~~~~g~~~~~~l~~a~~lglf~~l~~g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~~~~y~~t~~s~~l   85 (332)
T 3i53_A            6 AHIGLRALADLATPMAVRVAATLRVADHIAAGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLTEFGEQL   85 (332)
T ss_dssp             CSSCHHHHTCCHHHHHHHHHHHHTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECTTGGGG
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHcChHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecCCCeEEcCHhHHHH
Confidence            345789999999999999999999                           1             356899999999998


Q ss_pred             CCCCCCCChHHHHHHhcChhhh-hhhhhHHHHHhcCCcchhhhccCCchhhhhccChHHHHHHHHHHHhhhHHhHHHHHH
Q 037090           61 VPNEEGVSLAPTLLIIQDKVNM-DSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILE  139 (178)
Q Consensus        61 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~  139 (178)
                      +.+++. ++++++.+..++..+ +.|.+|++++++|+++|+.++ |.++|+|+.++|+....|+.+|...+....+.+++
T Consensus        86 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~  163 (332)
T 3i53_A           86 RDDHAA-GKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRY-GTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAA  163 (332)
T ss_dssp             STTCTT-CCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHH-SSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGG
T ss_pred             hcCCch-hHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhh-CCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHH
Confidence            877663 788888776554556 889999999999999999999 88899999999999999999999998887788889


Q ss_pred             hcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          140 TYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       140 ~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      .++ +++..+|||||||+|.++..+++++|+++++++
T Consensus       164 ~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~  199 (332)
T 3i53_A          164 KYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVL  199 (332)
T ss_dssp             SSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred             hCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEe
Confidence            998 888899999999999999999999999998765

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.88  E-value=7.9e-22  Score=162.94  Aligned_cols=161  Identities=30%  Similarity=0.539  Sum_probs=127.2

Q ss_pred             ccccHHHHHHH--HHHHhhHHHHHHHHHHHhC------C-----------------------------------------
Q 037090           15 ARDEQDFLLAM--ELASGTILPMTIKSAIELD------R-----------------------------------------   45 (178)
Q Consensus        15 ~~~~~~~~~l~--~~~~g~~~s~~L~~a~elg------R-----------------------------------------   45 (178)
                      ++..+++..++  +++.+++.+++|++|++||      +                                         
T Consensus        17 ~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~g   96 (372)
T 1fp1_D           17 SEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYS   96 (372)
T ss_dssp             --CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTT
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCC
Confidence            45667788888  9999999999999999998      0                                         


Q ss_pred             ----C----C----CCceecchhccccCCCCCCCChHHHHHHhcChhhhhhhhhHHHHHhcC-CcchhhhccCCchhhhh
Q 037090           46 ----S----V----QRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEG-LVPFMKAHNGMDGFAVA  112 (178)
Q Consensus        46 ----~----~----~~~y~~t~~s~~L~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~l~~g-~~~f~~a~~g~~~~e~~  112 (178)
                          .    +    +++|++|+.|+.|++++++.++++++.+..++.++++|.+|++++++| .++|+.++ |.++|+|+
T Consensus        97 ll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~-g~~~~~~~  175 (372)
T 1fp1_D           97 VLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVH-GVTKYEFM  175 (372)
T ss_dssp             SEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------------CC
T ss_pred             ceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHh-CCCHHHHH
Confidence                1    1    148999999999988765237889998877777889999999999999 89999999 88999999


Q ss_pred             ccChHHHHHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          113 AKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       113 ~~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      .++|+....|+.+|...+....+.+++.++++.+..+|||||||+|.++..+++++|+++++++
T Consensus       176 ~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~  239 (372)
T 1fp1_D          176 GKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINF  239 (372)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred             HhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEe
Confidence            9999999999999999988888889999965788889999999999999999999999988764

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.87  E-value=7.1e-22  Score=162.75  Aligned_cols=169  Identities=13%  Similarity=0.170  Sum_probs=138.3

Q ss_pred             CCCCCCCcccccCCccccHHHHHHHHHHHhhHHHHHHHHHHHhC---------------------------C--------
Q 037090            1 MSSLQDDHQVMMKPARDEQDFLLAMELASGTILPMTIKSAIELD---------------------------R--------   45 (178)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~s~~L~~a~elg---------------------------R--------   45 (178)
                      |||.......-.    .......|++++.+++.+++|+++++||                           |        
T Consensus         1 ~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~   76 (374)
T 1qzz_A            1 MSSSSPGEPLEP----TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLAGADTLAGLADRTDTHPQALSRLVRHLTVV   76 (374)
T ss_dssp             ---------CCC----CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHTTCCSHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCC----CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHHhhC
Confidence            566554432211    3455678999999999999999999999                           1        


Q ss_pred             -----CCCC--ceecchhccccCCCCCCCChHHHHHHhcChhhh-hhhhhHHHHHhcCCcchhhhccCCchhhhhccChH
Q 037090           46 -----SVQR--LYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNM-DSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEK  117 (178)
Q Consensus        46 -----~~~~--~y~~t~~s~~L~~~~~~~~~~~~v~~~~~~~~~-~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~p~  117 (178)
                           ..++  .|++|++++.|+.+++. ++++++.+..++..+ ..|.+|++++++|.++|+..+ |.++|+++.++|+
T Consensus        77 Gll~~~~~~~~~y~~t~~s~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-g~~~~~~~~~~~~  154 (374)
T 1qzz_A           77 GVLEGGEKQGRPLRPTRLGMLLADGHPA-QQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRY-GRPFWEDLSADVA  154 (374)
T ss_dssp             TSEECCCC-CCCCEECTTGGGGSTTCTT-CHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHH-SSCHHHHHHHCHH
T ss_pred             CCEEEeCCCCeEEEEChHHHhhcCCCcc-cHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhh-CCCHHHHHhhChH
Confidence                 2456  89999999999888764 889888776555567 899999999999999999999 8899999999999


Q ss_pred             HHHHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          118 INNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       118 ~~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      ....|+.+|...+....+.+++.++ +.+..+|||||||+|.++..+++++|+++++.+
T Consensus       155 ~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~  212 (374)
T 1qzz_A          155 LADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLV  212 (374)
T ss_dssp             HHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred             HHHHHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEE
Confidence            9999999999888777788999998 888899999999999999999999999887754

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.85  E-value=9.1e-21  Score=155.49  Aligned_cols=155  Identities=14%  Similarity=0.185  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhC---------------------------C-------------CCCCceecchhcc
Q 037090           19 QDFLLAMELASGTILPMTIKSAIELD---------------------------R-------------SVQRLYGLAPVSK   58 (178)
Q Consensus        19 ~~~~~l~~~~~g~~~s~~L~~a~elg---------------------------R-------------~~~~~y~~t~~s~   58 (178)
                      ....++++++.+++.+++|+++++||                           |             ..++.|++|+.|+
T Consensus        18 ~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~~g~y~~t~~s~   97 (360)
T 1tw3_A           18 IDALRTLIRLGSLHTPMVVRTAATLRLVDHILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGE   97 (360)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEECTTGG
T ss_pred             cchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecCCCeEEeCHHHH
Confidence            34677899999999999999999999                           1             2568999999999


Q ss_pred             ccCCCCCCCChHHHHHHhcChh-hhhhhhhHHHHHhcCCcchhhhccCCchhhhhccChHHHHHHHHHHHhhhHHhHHHH
Q 037090           59 YFVPNEEGVSLAPTLLIIQDKV-NMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEI  137 (178)
Q Consensus        59 ~L~~~~~~~~~~~~v~~~~~~~-~~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~  137 (178)
                      .|+++++. ++++++.+..++. .+..|.+|.+++++|.++|+..+ |.++|+++.++|+....|..+|...+....+.+
T Consensus        98 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~-g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l  175 (360)
T 1tw3_A           98 LLADDHPA-AQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIY-GKPFYEDLAGRPDLRASFDSLLACDQDVAFDAP  175 (360)
T ss_dssp             GGSTTSTT-CHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHH-SSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHH
T ss_pred             HHhcCCch-hHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhc-CCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHH
Confidence            99988774 8888887765444 67899999999999999999999 889999999999999999999998888777889


Q ss_pred             HHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          138 LETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       138 ~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      ++.++ +.+..+|||||||+|.++..+++++|+++++.+
T Consensus       176 ~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~  213 (360)
T 1tw3_A          176 AAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVL  213 (360)
T ss_dssp             HHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred             HHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEe
Confidence            99998 888899999999999999999999999988764

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.83  E-value=2.5e-20  Score=153.65  Aligned_cols=154  Identities=14%  Similarity=0.154  Sum_probs=124.2

Q ss_pred             CccccHHHHHHHHHHHhhHHHHHHHHHHHhC-----------------------------C------------CCCCcee
Q 037090           14 PARDEQDFLLAMELASGTILPMTIKSAIELD-----------------------------R------------SVQRLYG   52 (178)
Q Consensus        14 ~~~~~~~~~~l~~~~~g~~~s~~L~~a~elg-----------------------------R------------~~~~~y~   52 (178)
                      ..+..+++..+++++.|++.+++|+++++||                             |            ..+++|+
T Consensus         9 ~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~~~~y~   88 (363)
T 3dp7_A            9 QCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLEEDRYV   88 (363)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTEEE
T ss_pred             chhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEecCCEEe
Confidence            3456678899999999999999999999999                             1            3578999


Q ss_pred             cchhccccCCCCCCCChHHHHHHhcChhhhhhhhhHHHHHhcCCcchhhhccC--CchhhhhccChHHHHH----HHHHH
Q 037090           53 LAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNG--MDGFAVAAKDEKINNL----FNQSM  126 (178)
Q Consensus        53 ~t~~s~~L~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~l~~g~~~f~~a~~g--~~~~e~~~~~p~~~~~----F~~~M  126 (178)
                      +|+.|+.|+++++   ...++.+ ..+..+++|.+|++++++|.+++..++ |  .++|+++.++|+..+.    |+.+|
T Consensus        89 ~t~~s~~L~~~~~---~~~~~~~-~~~~~~~~~~~L~~~lr~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~f~~~~  163 (363)
T 3dp7_A           89 LAKAGWFLLNDKM---ARVNMEF-NHDVNYQGLFHLEEALLNGRPEGLKVF-GEWPTIYEGLSQLPEQVQKSWFGFDHFY  163 (363)
T ss_dssp             ECHHHHHHHHCHH---HHHHHHH-HHHTTHHHHTTHHHHHHHSSCGGGGGT-CCCSSHHHHGGGSCHHHHHHHHHHHHHT
T ss_pred             cccchHHhhCCCc---ccchhee-ecHHhhhhHHHHHHHHhcCCCcccccc-CchHhHHHHHhhCHHHHHHHHHHHHHHh
Confidence            9999999987764   3334444 345688999999999999999999898 6  7899999999997763    66766


Q ss_pred             HhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          127 HNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      .....   ..+++.+. ..+..+|||||||+|.++..+++++|+++++++
T Consensus       164 ~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~  209 (363)
T 3dp7_A          164 SDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIV  209 (363)
T ss_dssp             TCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEE
T ss_pred             hhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEE
Confidence            55432   23444444 356789999999999999999999999998765

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.80  E-value=4.6e-19  Score=145.55  Aligned_cols=152  Identities=20%  Similarity=0.266  Sum_probs=129.0

Q ss_pred             ccCCccccHHHHHHHHHHH-hhHHHHHHHHHHHhC---------------------------C------------CCCCc
Q 037090           11 MMKPARDEQDFLLAMELAS-GTILPMTIKSAIELD---------------------------R------------SVQRL   50 (178)
Q Consensus        11 ~~~~~~~~~~~~~l~~~~~-g~~~s~~L~~a~elg---------------------------R------------~~~~~   50 (178)
                      .|++.+..+....+++++. |++.+++|++|++||                           |            +.+++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~  100 (359)
T 1x19_A           21 MMSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAEGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLEDGK  100 (359)
T ss_dssp             EECCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred             cCCccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcCCCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeCCe
Confidence            3455667788889999987 899999999999999                           1            24579


Q ss_pred             eecchh-ccccCCCCC---CCChHHHHHHhcChhhhhhhhhHHHHHhcCCcchhhhccCCchhhhhccChH---HHHHHH
Q 037090           51 YGLAPV-SKYFVPNEE---GVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEK---INNLFN  123 (178)
Q Consensus        51 y~~t~~-s~~L~~~~~---~~~~~~~v~~~~~~~~~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~p~---~~~~F~  123 (178)
                      |++|+. +++|.++++   . ++++++.+. .+.+++.|.+|++++++|.+           |+++.++|+   ....|+
T Consensus       101 y~~t~~~~~~l~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~-----------~~~~~~~p~~~~~~~~f~  167 (359)
T 1x19_A          101 WSLTEFADYMFSPTPKEPNL-HQTPVAKAM-AFLADDFYMGLSQAVRGQKN-----------FKGQVPYPPVTREDNLYF  167 (359)
T ss_dssp             EEECHHHHHHSSSSCSBTTB-CCHHHHHHH-HHHHHHTGGGHHHHHTTSCC-----------CCCSSCSSCCSHHHHHHH
T ss_pred             EecCHHHHHHhcCCCCCccc-cHHHHHHHH-HHHHHHHHHHHHHHHhcCCC-----------CcccccCchhhHHHHHHH
Confidence            999996 567777665   3 788888876 45688999999999987653           678888999   999999


Q ss_pred             HHHHhhhH-HhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          124 QSMHNHTT-IVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       124 ~~M~~~~~-~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      .+|...+. ...+.+++.++ +.+..+|||||||+|.++..+++++|+++++.+
T Consensus       168 ~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~  220 (359)
T 1x19_A          168 EEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTIL  220 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEE
T ss_pred             HHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEE
Confidence            99999988 77888999999 888899999999999999999999999987764

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.80  E-value=4.2e-19  Score=143.90  Aligned_cols=147  Identities=12%  Similarity=0.074  Sum_probs=128.4

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhC---------------------------C------------CCCCceecchhc-ccc
Q 037090           21 FLLAMELASGTILPMTIKSAIELD---------------------------R------------SVQRLYGLAPVS-KYF   60 (178)
Q Consensus        21 ~~~l~~~~~g~~~s~~L~~a~elg---------------------------R------------~~~~~y~~t~~s-~~L   60 (178)
                      +..+++++.+++.+++|++|++||                           |            ..+++|++|+.+ +.|
T Consensus         7 ~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~~~~y~~t~~~~~~l   86 (335)
T 2r3s_A            7 PALFFNTVNAYQRSAAIKAAVELNVFTAISQGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQAEGYRLTSDSAMFL   86 (335)
T ss_dssp             SHHHHHHHTTHHHHHHHHHHHHTTHHHHHTTSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChHHHHhcCCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEecCCEEecCHHHHHHh
Confidence            367999999999999999999999                           1            357899999999 688


Q ss_pred             CCCCCCCChHHHHHHhcChhhhhhhhhHHHHHhcCCcchhhhccCCchhhhhccChHHHHHHHHHHHhhhHHhHHHHHHh
Q 037090           61 VPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILET  140 (178)
Q Consensus        61 ~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~  140 (178)
                      .++++. ++++++.+..++..++.|.+|++++++|.++|+      + |+++.++|+....|..+|..........+++.
T Consensus        87 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (335)
T 2r3s_A           87 DRQSKF-YVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS------S-EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQL  158 (335)
T ss_dssp             CTTSTT-CCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST------T-TGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHH
T ss_pred             ccCCcH-HHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC------C-cccccCCHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence            877763 788888887665788999999999999987664      3 88889999999999999999888878889999


Q ss_pred             cCCC--CCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          141 YKGF--ERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       141 ~~~~--~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      ++ +  .+..+|+|||||+|.++..+++++|+.+++.+
T Consensus       159 ~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~  195 (335)
T 2r3s_A          159 VN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGV  195 (335)
T ss_dssp             HT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEE
T ss_pred             cc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEE
Confidence            98 7  88889999999999999999999999887654

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.75  E-value=1.3e-17  Score=136.36  Aligned_cols=147  Identities=13%  Similarity=0.179  Sum_probs=118.5

Q ss_pred             cHHHHHHHHHHHhhHHHHHHHHHHHhC--------------------------C------------CCCCceecchhcc-
Q 037090           18 EQDFLLAMELASGTILPMTIKSAIELD--------------------------R------------SVQRLYGLAPVSK-   58 (178)
Q Consensus        18 ~~~~~~l~~~~~g~~~s~~L~~a~elg--------------------------R------------~~~~~y~~t~~s~-   58 (178)
                      ...+..+++++.+++.+++|++|+|||                          |            +.+++|.+|+.++ 
T Consensus        22 l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~~~y~~t~~s~~  101 (352)
T 3mcz_A           22 LTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQTGRTPAEVAASFGMVEGKAAILLHALAALGLLTKEGDAFRNTALTER  101 (352)
T ss_dssp             CCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhCCCCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecCCeeecCHHHHh
Confidence            344555999999999999999999999                          1            2457899999997 


Q ss_pred             ccCCCCCCCChHHHHHHhcChhhhhhhhhHHHHHhcCCcc-hhhhccCCchhhhhccChHHHHHHHHHHHhhhHHhHHHH
Q 037090           59 YFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVP-FMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEI  137 (178)
Q Consensus        59 ~L~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~l~~g~~~-f~~a~~g~~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~  137 (178)
                      +|.++.|. +++.++.+.  ...++.|.+|++++++|.+. |+...       ++.++|+....|+.+|...... ...+
T Consensus       102 ~l~~~~~~-~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~~-------~~~~~~~~~~~f~~~m~~~~~~-~~~~  170 (352)
T 3mcz_A          102 YLTTTSAD-YIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQES-------RFAHDTRARDAFNDAMVRLSQP-MVDV  170 (352)
T ss_dssp             HHSTTCTT-CCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHHH-------HTTTCHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             hccCCChh-hHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCccccc-------ccccCHHHHHHHHHHHHhhhhh-HHHH
Confidence            56666663 788887664  35788999999999998643 33322       3467999999999999984444 2478


Q ss_pred             HHhcCCCCC-CCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          138 LETYKGFER-LNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       138 ~~~~~~~~~-~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      ++.++ +.+ ..+|||||||+|.++..+++++|+++++++
T Consensus       171 l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~  209 (352)
T 3mcz_A          171 VSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIW  209 (352)
T ss_dssp             HHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEE
T ss_pred             HHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEE
Confidence            88998 877 899999999999999999999999998875

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.34  E-value=0.00012  Score=55.01  Aligned_cols=61  Identities=11%  Similarity=0.050  Sum_probs=37.6

Q ss_pred             hhhhccChHHHHHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          109 FAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       109 ~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      ++|....|.....+...+........+.+.+..+   ...+|+|||||+|.++..++++.|++.
T Consensus         4 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~vLDlG~G~G~~~~~l~~~~~~v~   64 (227)
T 1ve3_A            4 KEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMK---KRGKVLDLACGVGGFSFLLEDYGFEVV   64 (227)
T ss_dssp             HHHHHHCSTTTCTTSHHHHHHHHHHHHHHHHSCC---SCCEEEEETCTTSHHHHHHHHTTCEEE
T ss_pred             hhHHHHhhhhhcccHHHHHHHHHHHHHHHHHhcC---CCCeEEEEeccCCHHHHHHHHcCCEEE
Confidence            3344444443334444444333444444444443   357999999999999999999988443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=96.99  E-value=0.00055  Score=52.06  Aligned_cols=40  Identities=15%  Similarity=0.241  Sum_probs=31.3

Q ss_pred             hHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          133 VMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       133 ~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ....+++.++ ..+..+|+|||||+|.++..+++..| .+.+
T Consensus        79 ~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~  118 (235)
T 1jg1_A           79 MVAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVY  118 (235)
T ss_dssp             HHHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEE
T ss_pred             HHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEE
Confidence            3455666666 66677999999999999999999997 4433

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=96.95  E-value=0.0027  Score=47.73  Aligned_cols=41  Identities=12%  Similarity=0.077  Sum_probs=31.2

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ..+++..+...+..+|+|||||+|.++..+++++|..+.+.
T Consensus        33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~   73 (234)
T 3dtn_A           33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTL   73 (234)
T ss_dssp             HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEE
T ss_pred             HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEE
Confidence            44455544223457999999999999999999999877654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=96.91  E-value=0.0024  Score=47.17  Aligned_cols=40  Identities=8%  Similarity=-0.044  Sum_probs=33.0

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ..+++..+ .....+|+|||||+|.++..+++++|..+.+.
T Consensus        30 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~   69 (204)
T 3e05_A           30 AVTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFA   69 (204)
T ss_dssp             HHHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEE
T ss_pred             HHHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence            44566666 66778999999999999999999999877654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.76  E-value=0.007  Score=47.86  Aligned_cols=63  Identities=13%  Similarity=0.142  Sum_probs=40.5

Q ss_pred             CCchhhhhcc---ChHHHHHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          105 GMDGFAVAAK---DEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       105 g~~~~e~~~~---~p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      +.++++++..   ..-....|.. +..........+++.++......+|+|||||.|.++..+++++
T Consensus        74 ~~~~~~~~~~~~~~~y~~~~f~~-~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~  139 (312)
T 3vc1_A           74 GPVDRAALGDPEHSEYEKKVIAE-LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF  139 (312)
T ss_dssp             SCCCHHHHCCTTSTTHHHHHHHH-HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred             chhHHHhhcCCCccccchHHHhh-hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc
Confidence            3445555543   2222334444 4444444445566666535567899999999999999999986

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=96.75  E-value=0.0015  Score=50.98  Aligned_cols=40  Identities=15%  Similarity=0.121  Sum_probs=28.6

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh-cCCCeEEE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTK-ISIISLNT  175 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~-~P~l~~~v  175 (178)
                      ..+++..+ ..+..+|+|||||.|.++..++++ +|..+.+.
T Consensus       100 ~~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~  140 (275)
T 1yb2_A          100 SYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTV  140 (275)
T ss_dssp             ------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEE
T ss_pred             HHHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEE
Confidence            34555666 667789999999999999999998 78766554

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=96.71  E-value=0.00067  Score=50.21  Aligned_cols=29  Identities=21%  Similarity=0.146  Sum_probs=25.7

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ..+|+|||||+|..+..+++.+|..+.+.
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~   94 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTL   94 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEE
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence            46899999999999999999999877654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=96.62  E-value=0.003  Score=46.50  Aligned_cols=40  Identities=18%  Similarity=0.174  Sum_probs=30.3

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ..+++.++...+..+|+|||||+|.++..+++++|..+.+
T Consensus        19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~   58 (215)
T 4dzr_A           19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVT   58 (215)
T ss_dssp             HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEE
T ss_pred             HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEE
Confidence            4445554412556799999999999999999999976544

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.60  E-value=0.0051  Score=48.32  Aligned_cols=38  Identities=16%  Similarity=0.268  Sum_probs=31.3

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      ...+++..+ ..+..+|+|||||.|.++..+++++| .+.
T Consensus        61 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v   98 (302)
T 3hem_A           61 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNV   98 (302)
T ss_dssp             HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEE
T ss_pred             HHHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEE
Confidence            455677776 77778999999999999999999987 443

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=96.59  E-value=0.0016  Score=49.85  Aligned_cols=41  Identities=12%  Similarity=-0.046  Sum_probs=33.5

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh-cCCCeEEE
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTK-ISIISLNT  175 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~-~P~l~~~v  175 (178)
                      ...++...+ .....+|+|||||+|.++..++++ .|..+.+.
T Consensus        82 ~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~  123 (255)
T 3mb5_A           82 AALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVS  123 (255)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEE
T ss_pred             HHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEE
Confidence            445666776 777789999999999999999999 78776554

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=96.58  E-value=0.0037  Score=47.60  Aligned_cols=40  Identities=18%  Similarity=0.342  Sum_probs=32.0

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ..+++.++ .....+|+|||||+|.++..+++++|..+.+.
T Consensus        23 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~   62 (259)
T 2p35_A           23 RDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITG   62 (259)
T ss_dssp             HHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEE
T ss_pred             HHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEE
Confidence            34666666 56667999999999999999999998766543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=96.58  E-value=0.0026  Score=47.73  Aligned_cols=29  Identities=14%  Similarity=0.078  Sum_probs=25.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      +..+|+|||||+|.++..+++++|+.+.+
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~   66 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYI   66 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEE
Confidence            34689999999999999999999987654

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=96.58  E-value=0.0067  Score=46.70  Aligned_cols=39  Identities=15%  Similarity=0.296  Sum_probs=31.3

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc-CCCeEE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKI-SIISLN  174 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~~~  174 (178)
                      ..+++.++ .....+|+|||||.|.++..+++++ |+.+.+
T Consensus        33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~   72 (275)
T 3bkx_A           33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVT   72 (275)
T ss_dssp             HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEE
T ss_pred             HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEE
Confidence            45666666 6667899999999999999999997 766544

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=96.57  E-value=0.0029  Score=46.70  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=28.9

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ...+++.++ ..+. +|+|||||+|.++..++++ |..+.+
T Consensus        33 ~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~   70 (219)
T 3dlc_A           33 AENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIR   70 (219)
T ss_dssp             HHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEE
T ss_pred             HHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEE
Confidence            455666666 5544 9999999999999999998 654443

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=96.56  E-value=0.0027  Score=47.35  Aligned_cols=30  Identities=17%  Similarity=0.058  Sum_probs=25.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      +..+|+|||||+|.++..+++++|+.+.+-
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~g   70 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIG   70 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEE
Confidence            346899999999999999999999876553

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=96.56  E-value=0.0028  Score=47.26  Aligned_cols=29  Identities=21%  Similarity=0.299  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      +..+|+|||||+|.++..+++++|..+.+
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~   57 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFFEQIT   57 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTCSEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCCCEEE
Confidence            45699999999999999999999876554

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=96.54  E-value=0.0037  Score=47.33  Aligned_cols=38  Identities=13%  Similarity=0.058  Sum_probs=27.2

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      ..+....+.+.+..+|+|||||.|.++..++++..++.
T Consensus        30 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~   67 (240)
T 3dli_A           30 ARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESI   67 (240)
T ss_dssp             HHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEE
T ss_pred             HHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEE
Confidence            33333333245567999999999999999999865543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=96.48  E-value=0.0018  Score=49.71  Aligned_cols=49  Identities=14%  Similarity=0.205  Sum_probs=32.1

Q ss_pred             HHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090          122 FNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       122 F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      |.......+......+++.++ .....+|+|||||+|.++..++++.+.+
T Consensus        14 ~~~s~~~~~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v   62 (260)
T 1vl5_A           14 YVTSQIHAKGSDLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVKKV   62 (260)
T ss_dssp             ---------CCCHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSSEE
T ss_pred             eecCccccCHHHHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCCEE
Confidence            333333334444566777776 6677899999999999999999998743

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=96.47  E-value=0.0035  Score=46.58  Aligned_cols=40  Identities=15%  Similarity=0.198  Sum_probs=32.3

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc-CCCeEEE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKI-SIISLNT  175 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~~~v  175 (178)
                      ..+++.++ .....+|+|||||.|.++..++++. |..+.+.
T Consensus        27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~   67 (219)
T 3dh0_A           27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYA   67 (219)
T ss_dssp             HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEE
T ss_pred             HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEE
Confidence            45666666 7777899999999999999999998 7666543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=96.44  E-value=0.0079  Score=47.05  Aligned_cols=31  Identities=16%  Similarity=0.268  Sum_probs=26.1

Q ss_pred             CCCCeEEEecCCc---cHHHHHHHHhcCCCeEEE
Q 037090          145 ERLNQFVDVADGL---GENKNILLTKISIISLNT  175 (178)
Q Consensus       145 ~~~~~vVDVGGg~---G~~~~~i~~~~P~l~~~v  175 (178)
                      .+..+|||||||+   |.++..+.+.+|+.+.+.
T Consensus        76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~  109 (274)
T 2qe6_A           76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVY  109 (274)
T ss_dssp             TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEE
T ss_pred             cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEE
Confidence            3457999999999   999888889999987654

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=96.43  E-value=0.0095  Score=45.77  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=29.5

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ...+++..+ .....+|+|||||.|.++..++++++
T Consensus        50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~   84 (273)
T 3bus_A           50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATARD   84 (273)
T ss_dssp             HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHSC
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcC
Confidence            456777777 77778999999999999999999873

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=96.43  E-value=0.0037  Score=47.26  Aligned_cols=29  Identities=7%  Similarity=0.061  Sum_probs=25.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      +..+|||||||+|.++..+++++|+.+.+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~   62 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFL   62 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEE
Confidence            45799999999999999999999986644

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=96.37  E-value=0.0037  Score=47.08  Aligned_cols=34  Identities=12%  Similarity=-0.078  Sum_probs=26.9

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      +.+.+..+ .....+|+|||||+|.++..++++.+
T Consensus        33 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~   66 (243)
T 3bkw_A           33 PALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA   66 (243)
T ss_dssp             HHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC
T ss_pred             HHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC
Confidence            34556665 55567999999999999999998854

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=96.31  E-value=0.0064  Score=46.91  Aligned_cols=32  Identities=13%  Similarity=0.239  Sum_probs=28.1

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      +....+|+|||||+|.++..+++++|..+.+.
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~   66 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITS   66 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEE
Confidence            56678999999999999999999999877654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=96.31  E-value=0.0041  Score=46.31  Aligned_cols=29  Identities=21%  Similarity=0.332  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      +..+|+|||||+|.++..+++++|..+.+
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~   57 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSFEQIT   57 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTCCEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCCCEEE
Confidence            35699999999999999999999876544

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=96.30  E-value=0.0048  Score=46.97  Aligned_cols=35  Identities=11%  Similarity=0.003  Sum_probs=27.6

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      +.+.+.++ ..+..+|+|||||+|.++..++++.+.
T Consensus        34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~   68 (253)
T 3g5l_A           34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK   68 (253)
T ss_dssp             HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS
T ss_pred             HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC
Confidence            34455555 445689999999999999999999873

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.27  E-value=0.011  Score=45.01  Aligned_cols=34  Identities=12%  Similarity=0.147  Sum_probs=28.6

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ...+++..+ .....+|+|||||+|.++..+++++
T Consensus        25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~   58 (256)
T 1nkv_A           25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH   58 (256)
T ss_dssp             HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT
T ss_pred             HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc
Confidence            455666666 6677899999999999999999987

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=96.24  E-value=0.017  Score=44.82  Aligned_cols=36  Identities=17%  Similarity=0.183  Sum_probs=27.1

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC--CCeE
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTKIS--IISL  173 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P--~l~~  173 (178)
                      .+++.+  ..+..+|+|||||+|.++..++++++  +++.
T Consensus        62 ~l~~~~--~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v   99 (261)
T 4gek_A           62 MLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKI   99 (261)
T ss_dssp             HHHHHH--CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEE
T ss_pred             HHHHHh--CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEE
Confidence            344444  35567999999999999999999874  4443

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=96.23  E-value=0.0054  Score=46.55  Aligned_cols=33  Identities=21%  Similarity=0.367  Sum_probs=27.5

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ..+++.++ ..+..+|+|||||+|.++..++++.
T Consensus        83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~  115 (254)
T 1xtp_A           83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL  115 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH
T ss_pred             HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh
Confidence            45666666 5667899999999999999999887

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=96.23  E-value=0.0085  Score=49.14  Aligned_cols=40  Identities=18%  Similarity=0.086  Sum_probs=32.1

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ..+++.++ .....+|+|||||+|.++..+++++|..+.+-
T Consensus       212 ~~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~g  251 (375)
T 4dcm_A          212 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVF  251 (375)
T ss_dssp             HHHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEE
T ss_pred             HHHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEE
Confidence            34566666 44447999999999999999999999877653

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=96.23  E-value=0.0036  Score=47.70  Aligned_cols=40  Identities=8%  Similarity=0.032  Sum_probs=32.5

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh-cCCCeEEE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTK-ISIISLNT  175 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~-~P~l~~~v  175 (178)
                      ..+++..+ .....+|+|||||+|.++..++++ .|..+.+.
T Consensus        86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~  126 (258)
T 2pwy_A           86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVES  126 (258)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEE
T ss_pred             HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEE
Confidence            45677777 777789999999999999999999 57666543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=96.22  E-value=0.0084  Score=50.82  Aligned_cols=39  Identities=15%  Similarity=0.047  Sum_probs=28.5

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      .+.+++.++ ..+..+|+|||||+|.++..+++ .|..+.+
T Consensus       147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~  185 (480)
T 3b3j_A          147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIY  185 (480)
T ss_dssp             HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEE
T ss_pred             HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEE
Confidence            345566555 44567999999999999998887 5665544

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=96.22  E-value=0.0035  Score=47.96  Aligned_cols=30  Identities=17%  Similarity=0.093  Sum_probs=25.3

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      .+..+|||||||.|.++..+++++|+...+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~   74 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLIL   74 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEE
Confidence            345689999999999999999999987644

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.013  Score=45.95  Aligned_cols=30  Identities=17%  Similarity=0.197  Sum_probs=25.6

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhc-CCCeEE
Q 037090          145 ERLNQFVDVADGLGENKNILLTKI-SIISLN  174 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~-P~l~~~  174 (178)
                      .+..+|+|||||+|.++..+++++ |..+.+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~   65 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQII   65 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEE
Confidence            456799999999999999999987 766654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.18  E-value=0.0079  Score=44.36  Aligned_cols=35  Identities=17%  Similarity=0.127  Sum_probs=26.0

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ..+++.+.......+|+|||||+|.++..++++..
T Consensus        35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~   69 (218)
T 3ou2_A           35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGLAD   69 (218)
T ss_dssp             HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSS
T ss_pred             HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCC
Confidence            34455444344556999999999999999999843

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.17  E-value=0.011  Score=45.78  Aligned_cols=36  Identities=17%  Similarity=0.193  Sum_probs=29.1

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ...+++..+ .....+|+|||||.|.++..++++++.
T Consensus        53 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~   88 (287)
T 1kpg_A           53 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDV   88 (287)
T ss_dssp             HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCC
T ss_pred             HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCC
Confidence            345666666 666789999999999999999988764

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=96.14  E-value=0.006  Score=47.98  Aligned_cols=29  Identities=14%  Similarity=0.090  Sum_probs=25.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ..++|+|||||+|.++..+++++|..+.+
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~   74 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMV   74 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEE
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence            45799999999999999999999877654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=96.13  E-value=0.0055  Score=47.00  Aligned_cols=29  Identities=21%  Similarity=0.251  Sum_probs=24.1

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      .+..+|+|||||+|.++..++++.+.+.+
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~g   77 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSFGTVEG   77 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTSSEEEE
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcCCeEEE
Confidence            34579999999999999999999775444

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=96.12  E-value=0.0056  Score=46.80  Aligned_cols=30  Identities=13%  Similarity=0.026  Sum_probs=25.9

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      .+..+|+|||||+|.++..+++++|+.+.+
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~   77 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLIL   77 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEE
Confidence            455789999999999999999999986544

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.09  E-value=0.0078  Score=45.82  Aligned_cols=38  Identities=21%  Similarity=0.286  Sum_probs=29.7

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      ...+++.++ .....+|+|||||+|.++..+++++ ..+.
T Consensus        44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v   81 (266)
T 3ujc_A           44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHT   81 (266)
T ss_dssp             HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEE
T ss_pred             HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEE
Confidence            345566665 6677899999999999999999987 4443

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=96.08  E-value=0.014  Score=45.43  Aligned_cols=36  Identities=17%  Similarity=0.265  Sum_probs=28.7

Q ss_pred             hHHHHHHhc----CCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          133 VMKEILETY----KGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       133 ~~~~~~~~~----~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ....+++.+    + .....+|+|||||.|.++..++++++
T Consensus        66 ~~~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~  105 (297)
T 2o57_A           66 TDEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKFG  105 (297)
T ss_dssp             HHHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC
T ss_pred             HHHHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHhC
Confidence            345556665    4 66678999999999999999999874

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=96.08  E-value=0.013  Score=44.51  Aligned_cols=36  Identities=11%  Similarity=0.155  Sum_probs=28.2

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ..+++..+...+..+|+|||||+|..+..+++++|.
T Consensus        35 ~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~   70 (257)
T 3f4k_A           35 RKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG   70 (257)
T ss_dssp             HHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS
T ss_pred             HHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC
Confidence            344455433556679999999999999999999984

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=96.07  E-value=0.0056  Score=47.24  Aligned_cols=33  Identities=15%  Similarity=0.117  Sum_probs=28.1

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      .....+|+|||+|+|..+..++..+|+.+.+.+
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~v  110 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLV  110 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEE
Confidence            345679999999999999999999999876643

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=96.06  E-value=0.0053  Score=47.98  Aligned_cols=37  Identities=3%  Similarity=-0.188  Sum_probs=29.4

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      ...+++..+ .....+|+|||||+|.++..++++..++
T Consensus        34 ~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g~~V   70 (261)
T 3iv6_A           34 RENDIFLEN-IVPGSTVAVIGASTRFLIEKALERGASV   70 (261)
T ss_dssp             HHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTTCEE
T ss_pred             HHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcCCEE
Confidence            355666666 6677899999999999999999885443

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=96.06  E-value=0.005  Score=46.19  Aligned_cols=30  Identities=10%  Similarity=0.103  Sum_probs=26.1

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ....+|+|||||.|-++..++...|+.+.+
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~   77 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYH   77 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEE
Confidence            446799999999999999999999998543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=96.00  E-value=0.014  Score=41.60  Aligned_cols=37  Identities=14%  Similarity=0.085  Sum_probs=27.7

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ..+++.++ ..+..+|+|||||+|.++..+++  |..+.+
T Consensus        25 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~   61 (183)
T 2yxd_A           25 AVSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVY   61 (183)
T ss_dssp             HHHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEE
T ss_pred             HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEE
Confidence            34555555 55667999999999999999998  555443

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=95.99  E-value=0.0085  Score=45.23  Aligned_cols=29  Identities=7%  Similarity=0.019  Sum_probs=25.0

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      ..+..+|+|||||+|.++..+++++|..+
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~  100 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGI  100 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcE
Confidence            55667999999999999999999998433

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=95.99  E-value=0.0071  Score=48.74  Aligned_cols=41  Identities=20%  Similarity=0.159  Sum_probs=31.8

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ...+++.++ .....+|+|||||+|.++..+++++|..+.+.
T Consensus       185 ~~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~  225 (343)
T 2pjd_A          185 SQLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTL  225 (343)
T ss_dssp             HHHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEE
T ss_pred             HHHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEE
Confidence            345666765 33456899999999999999999999766543

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=95.99  E-value=0.0084  Score=46.06  Aligned_cols=35  Identities=11%  Similarity=0.351  Sum_probs=28.7

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ...+++..+ ..+..+|+|||+|+|.++..++++..
T Consensus        19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~~   53 (244)
T 1qam_A           19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCN   53 (244)
T ss_dssp             HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSS
T ss_pred             HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcCC
Confidence            455666666 66678999999999999999999873

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=95.93  E-value=0.017  Score=45.56  Aligned_cols=34  Identities=12%  Similarity=0.218  Sum_probs=28.4

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ...+++..+ .....+|+|||||.|.++..+++++
T Consensus        79 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~  112 (318)
T 2fk8_A           79 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF  112 (318)
T ss_dssp             HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred             HHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC
Confidence            455666666 6667899999999999999999987

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=95.92  E-value=0.0067  Score=45.04  Aligned_cols=31  Identities=13%  Similarity=0.238  Sum_probs=24.7

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      +.+++.++  .+..+|+|||||.|.++..++++
T Consensus        23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~   53 (230)
T 3cc8_A           23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN   53 (230)
T ss_dssp             HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT
T ss_pred             HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc
Confidence            44555554  34579999999999999999988

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=95.88  E-value=0.02  Score=42.34  Aligned_cols=39  Identities=8%  Similarity=0.058  Sum_probs=30.2

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc-CCCeEE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKI-SIISLN  174 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~~~  174 (178)
                      ..+++..+ .....+|+|||||+|.++..+++.. |..+.+
T Consensus        67 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~  106 (215)
T 2yxe_A           67 GMMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVV  106 (215)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEE
T ss_pred             HHHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEE
Confidence            44555555 6666799999999999999999998 555443

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=95.86  E-value=0.019  Score=44.51  Aligned_cols=41  Identities=15%  Similarity=0.042  Sum_probs=33.0

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh-cCCCeEEE
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTK-ISIISLNT  175 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~-~P~l~~~v  175 (178)
                      +..++...+ .....+|+|||+|+|.++..++++ .|..+.+.
T Consensus       101 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~  142 (277)
T 1o54_A          101 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFA  142 (277)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEE
T ss_pred             HHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEE
Confidence            345667776 777789999999999999999999 67766554

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=95.86  E-value=0.021  Score=44.30  Aligned_cols=39  Identities=15%  Similarity=0.189  Sum_probs=29.9

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ..+++.++  .+..+|+|||+|+|..+..+++.+|..+.+.
T Consensus       100 ~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~  138 (276)
T 2b3t_A          100 EQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIA  138 (276)
T ss_dssp             HHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEE
T ss_pred             HHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEE
Confidence            44455543  3346899999999999999999999876553

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=95.85  E-value=0.0077  Score=48.42  Aligned_cols=29  Identities=3%  Similarity=-0.019  Sum_probs=25.9

Q ss_pred             CeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          148 NQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       148 ~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      .+|+|||||.|.++..+++++|..+.+++
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~V  119 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVV  119 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEE
Confidence            38999999999999999999999976653

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=95.83  E-value=0.0016  Score=48.50  Aligned_cols=27  Identities=7%  Similarity=0.011  Sum_probs=22.8

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .....+|+|||||+|.++..++++..+
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~~~   75 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHCKR   75 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGEEE
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcCCE
Confidence            455679999999999999999988643

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=95.80  E-value=0.0087  Score=47.18  Aligned_cols=35  Identities=20%  Similarity=0.433  Sum_probs=29.0

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ..+++..+ .....+|+|||+|+|.++..++++.+.
T Consensus        32 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~   66 (279)
T 3uzu_A           32 DAIVAAIR-PERGERMVEIGPGLGALTGPVIARLAT   66 (279)
T ss_dssp             HHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCB
T ss_pred             HHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCC
Confidence            44666666 666779999999999999999999876

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=95.80  E-value=0.017  Score=48.34  Aligned_cols=38  Identities=11%  Similarity=0.242  Sum_probs=30.7

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      ..+++..+ .....+|+|||||+|.++..+++.+|..++
T Consensus       232 ~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V  269 (433)
T 1u2z_A          232 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALS  269 (433)
T ss_dssp             HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEE
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEE
Confidence            44556666 667789999999999999999999886543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=95.79  E-value=0.017  Score=44.39  Aligned_cols=37  Identities=14%  Similarity=0.170  Sum_probs=27.9

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      +++..+...+..+|+|||||+|.++..++++ |..+.+
T Consensus        37 ~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~   73 (267)
T 3kkz_A           37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVT   73 (267)
T ss_dssp             HHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEE
T ss_pred             HHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEE
Confidence            4444332456689999999999999999998 665554

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=95.79  E-value=0.013  Score=45.20  Aligned_cols=41  Identities=12%  Similarity=0.028  Sum_probs=31.9

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh-cCCCeEEE
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTK-ISIISLNT  175 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~-~P~l~~~v  175 (178)
                      ...+++..+ .....+|+|||||+|.++..++++ .|..+.+.
T Consensus        88 ~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~  129 (280)
T 1i9g_A           88 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVIS  129 (280)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEE
T ss_pred             HHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEE
Confidence            345666776 777789999999999999999997 46665543

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=95.75  E-value=0.016  Score=44.43  Aligned_cols=37  Identities=14%  Similarity=0.231  Sum_probs=28.4

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      ...+++.++ ..+..+|+|||||+|.++..+++  |..+.
T Consensus        23 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v   59 (261)
T 3ege_A           23 VNAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFV   59 (261)
T ss_dssp             HHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEE
T ss_pred             HHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEE
Confidence            345566666 66678999999999999999998  54443

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=95.75  E-value=0.011  Score=45.68  Aligned_cols=31  Identities=13%  Similarity=0.252  Sum_probs=26.4

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ..+..+|+|||+|+|.++..+++++|..+.+
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~   64 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVT   64 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEE
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEE
Confidence            4456799999999999999999999976544

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=95.73  E-value=0.011  Score=46.55  Aligned_cols=38  Identities=18%  Similarity=0.317  Sum_probs=30.4

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      ...+++..+ ..+..+|+|||||+|.++..++++..++.
T Consensus        17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~~v~   54 (285)
T 1zq9_A           17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAKKVV   54 (285)
T ss_dssp             HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSSEEE
T ss_pred             HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCCEEE
Confidence            355666676 66678999999999999999999876443

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=95.72  E-value=0.015  Score=43.88  Aligned_cols=30  Identities=20%  Similarity=0.194  Sum_probs=25.1

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      .....+|+|||||+|.++..++++.+++.+
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~g   83 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFPRVIG   83 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSSCEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCCCEEE
Confidence            344568999999999999999999996544

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=95.66  E-value=0.009  Score=43.05  Aligned_cols=31  Identities=16%  Similarity=0.232  Sum_probs=24.2

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      .+++.+.  ....+|+|||||.|.++..++++.
T Consensus        38 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~   68 (195)
T 3cgg_A           38 RLIDAMA--PRGAKILDAGCGQGRIGGYLSKQG   68 (195)
T ss_dssp             HHHHHHS--CTTCEEEEETCTTTHHHHHHHHTT
T ss_pred             HHHHHhc--cCCCeEEEECCCCCHHHHHHHHCC
Confidence            3555543  455799999999999999999873

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=95.64  E-value=0.0058  Score=45.92  Aligned_cols=28  Identities=11%  Similarity=0.102  Sum_probs=24.1

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ..+|+|||||+|.++..+++++|++.|+
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~~~v~gv   70 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQEHFNDITCV   70 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTCSCEEEE
T ss_pred             CCcEEEECCCCCHHHHHHHHhCCcEEEE
Confidence            4579999999999999999999876553

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=95.63  E-value=0.0098  Score=48.93  Aligned_cols=41  Identities=10%  Similarity=-0.058  Sum_probs=31.9

Q ss_pred             hHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090          130 TTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      .......+++.++ .....+|+|||||+|.++..++++..++
T Consensus        92 ~~~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g~~v  132 (416)
T 4e2x_A           92 FAMLARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAGVRH  132 (416)
T ss_dssp             HHHHHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcCCcE
Confidence            3344566777777 6677899999999999999999875543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=95.63  E-value=0.011  Score=46.42  Aligned_cols=28  Identities=14%  Similarity=0.095  Sum_probs=24.2

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ..+|+|||+|+|.++..+++. |..+.+-
T Consensus       124 ~~~vLDlG~GsG~~~~~la~~-~~~~v~~  151 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAKF-SDAIVFA  151 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHHH-SSCEEEE
T ss_pred             CCEEEEEeCchhHHHHHHHHC-CCCEEEE
Confidence            458999999999999999999 8876553

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=95.62  E-value=0.016  Score=44.06  Aligned_cols=26  Identities=15%  Similarity=0.120  Sum_probs=22.2

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          144 FERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      .....+|+|||||+|.++..++++..
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~~   62 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARGY   62 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTTC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCCC
Confidence            55667999999999999999998743

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=95.61  E-value=0.025  Score=40.43  Aligned_cols=36  Identities=11%  Similarity=0.151  Sum_probs=25.3

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      .+++.+....+..+|+|||||+|.++..++++ |..+
T Consensus        21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~   56 (177)
T 2esr_A           21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSA   56 (177)
T ss_dssp             HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCE
T ss_pred             HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCE
Confidence            34444331334578999999999999999987 5433

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=95.60  E-value=0.0092  Score=45.01  Aligned_cols=31  Identities=3%  Similarity=-0.076  Sum_probs=25.8

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhc-CCCeEE
Q 037090          144 FERLNQFVDVADGLGENKNILLTKI-SIISLN  174 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~~~  174 (178)
                      .....+|+|||||+|.++..+++++ |..+.+
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~  106 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVY  106 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEE
Confidence            5566799999999999999999997 655543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=95.60  E-value=0.012  Score=44.15  Aligned_cols=27  Identities=7%  Similarity=0.063  Sum_probs=23.7

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ..+..+|+|||||+|..+..++++.|.
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~   81 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDE   81 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTT
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCC
Confidence            556679999999999999999999873

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=95.60  E-value=0.011  Score=44.15  Aligned_cols=29  Identities=10%  Similarity=-0.014  Sum_probs=24.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcC-CCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKIS-IISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P-~l~~~  174 (178)
                      +.++|+|||+|+|..+..+++..| ..+.+
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~   98 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVV   98 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEE
Confidence            456999999999999999999987 44443

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=95.59  E-value=0.0067  Score=47.21  Aligned_cols=35  Identities=20%  Similarity=0.278  Sum_probs=25.9

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      +.+..+ ..+..+|+|||||+|..+..++++.+++.
T Consensus        49 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~   83 (293)
T 3thr_A           49 LLGLLR-QHGCHRVLDVACGTGVDSIMLVEEGFSVT   83 (293)
T ss_dssp             HHHHHH-HTTCCEEEETTCTTSHHHHHHHHTTCEEE
T ss_pred             HHHHhc-ccCCCEEEEecCCCCHHHHHHHHCCCeEE
Confidence            333333 33457999999999999999999866433

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=95.57  E-value=0.021  Score=46.07  Aligned_cols=32  Identities=19%  Similarity=0.085  Sum_probs=24.3

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      ..+++... ..+..+|+|||||+|.++..++++
T Consensus        40 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~   71 (348)
T 2y1w_A           40 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA   71 (348)
T ss_dssp             HHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT
T ss_pred             HHHHhccc-cCCcCEEEEcCCCccHHHHHHHhC
Confidence            34455544 445579999999999999998886

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=95.55  E-value=0.027  Score=47.09  Aligned_cols=37  Identities=16%  Similarity=0.315  Sum_probs=30.7

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      ...+++..+ .....+|+|||||+|.+++.+++.+|.-
T Consensus       162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~  198 (438)
T 3uwp_A          162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCK  198 (438)
T ss_dssp             HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCS
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCC
Confidence            455666666 7777899999999999999999988754

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=95.54  E-value=0.028  Score=45.23  Aligned_cols=30  Identities=17%  Similarity=0.097  Sum_probs=23.3

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      +.+..+ ..+.++|+|||||+|.++..++++
T Consensus        56 i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~   85 (340)
T 2fyt_A           56 IYQNPH-IFKDKVVLDVGCGTGILSMFAAKA   85 (340)
T ss_dssp             HHHCGG-GTTTCEEEEETCTTSHHHHHHHHT
T ss_pred             HHhhhh-hcCCCEEEEeeccCcHHHHHHHHc
Confidence            334433 445679999999999999999987

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=95.54  E-value=0.01  Score=45.03  Aligned_cols=32  Identities=19%  Similarity=0.281  Sum_probs=26.8

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      +.+..+|+|||+|+|..+..+++..|..+.+.
T Consensus        68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~   99 (240)
T 1xdz_A           68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTI   99 (240)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEE
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEE
Confidence            34567999999999999999999889876543

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=95.50  E-value=0.019  Score=45.09  Aligned_cols=35  Identities=23%  Similarity=0.245  Sum_probs=27.4

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      ..+++..+ .... +|+|||+|+|.++..++++..++
T Consensus        37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~~~V   71 (271)
T 3fut_A           37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAGAEV   71 (271)
T ss_dssp             HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTTCCE
T ss_pred             HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcCCEE
Confidence            44566666 5555 89999999999999999987543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=95.49  E-value=0.011  Score=41.92  Aligned_cols=25  Identities=20%  Similarity=0.074  Sum_probs=22.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCC
Q 037090          146 RLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      +..+|+|+|||+|.++..++++.|.
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~   65 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE   65 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe
Confidence            3468999999999999999999876

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=95.46  E-value=0.033  Score=41.34  Aligned_cols=31  Identities=16%  Similarity=0.058  Sum_probs=25.4

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      .+++..+ .....+|+|||||+|.++..++++
T Consensus        46 ~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~   76 (204)
T 3njr_A           46 LTLAALA-PRRGELLWDIGGGSGSVSVEWCLA   76 (204)
T ss_dssp             HHHHHHC-CCTTCEEEEETCTTCHHHHHHHHT
T ss_pred             HHHHhcC-CCCCCEEEEecCCCCHHHHHHHHc
Confidence            3455555 666689999999999999999988

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=95.45  E-value=0.018  Score=44.53  Aligned_cols=33  Identities=33%  Similarity=0.519  Sum_probs=27.4

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      ...+++..+ .....+|+|||+|+|.++..++++
T Consensus        20 ~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~   52 (249)
T 3ftd_A           20 LKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH   52 (249)
T ss_dssp             HHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS
T ss_pred             HHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc
Confidence            455666666 666779999999999999999987

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=95.44  E-value=0.028  Score=40.34  Aligned_cols=32  Identities=19%  Similarity=0.266  Sum_probs=26.4

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      ..+++.++ ..+..+|+|||||.|.++..++++
T Consensus        42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~   73 (194)
T 1dus_A           42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE   73 (194)
T ss_dssp             HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG
T ss_pred             HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc
Confidence            44566666 666779999999999999999887

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=95.44  E-value=0.019  Score=43.24  Aligned_cols=30  Identities=3%  Similarity=0.162  Sum_probs=25.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      +..+|+|||+|.|..+..+++++|..+.+.
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~   83 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVS   83 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEE
Confidence            346899999999999999999999765543

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=95.37  E-value=0.011  Score=45.10  Aligned_cols=25  Identities=8%  Similarity=0.016  Sum_probs=21.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCC
Q 037090          146 RLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ...+|+|||+|.|..+..++++.|.
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~~   84 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPID   84 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCEE
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCc
Confidence            3468999999999999999988875

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=95.35  E-value=0.027  Score=43.51  Aligned_cols=36  Identities=14%  Similarity=0.182  Sum_probs=27.8

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      ..+++.++ .....+|+|||||+|.++..+++  |..+.
T Consensus        47 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v   82 (279)
T 3ccf_A           47 EDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEV   82 (279)
T ss_dssp             CHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEE
T ss_pred             HHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeE
Confidence            44556666 56667999999999999999998  55443

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=95.29  E-value=0.014  Score=44.53  Aligned_cols=29  Identities=14%  Similarity=0.076  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      +..+|+|||||+|.++..+++++|..+.+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~   93 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFL   93 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEE
Confidence            45689999999999999999998876554

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=95.26  E-value=0.012  Score=43.70  Aligned_cols=32  Identities=25%  Similarity=0.265  Sum_probs=24.1

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      +++.++ .....+|+|||||.|.++..++++..
T Consensus        37 ~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~   68 (220)
T 3hnr_A           37 ILEDVV-NKSFGNVLEFGVGTGNLTNKLLLAGR   68 (220)
T ss_dssp             HHHHHH-HTCCSEEEEECCTTSHHHHHHHHTTC
T ss_pred             HHHHhh-ccCCCeEEEeCCCCCHHHHHHHhCCC
Confidence            444433 33457999999999999999999843

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=95.24  E-value=0.038  Score=39.96  Aligned_cols=31  Identities=29%  Similarity=0.387  Sum_probs=24.6

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      .+++.++ ..+..+|+|||||.|.++..++++
T Consensus        23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~   53 (199)
T 2xvm_A           23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN   53 (199)
T ss_dssp             HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT
T ss_pred             HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC
Confidence            3455555 445579999999999999999987

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=95.24  E-value=0.029  Score=42.76  Aligned_cols=33  Identities=15%  Similarity=0.353  Sum_probs=25.5

Q ss_pred             HHHHHhcCCCC-CCCeEEEecCCccHHHHHHHHhc
Q 037090          135 KEILETYKGFE-RLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       135 ~~~~~~~~~~~-~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ...++.++ .. +.++|+|||||+|.++..++++.
T Consensus        26 ~~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~g   59 (232)
T 3opn_A           26 EKALKEFH-LEINGKTCLDIGSSTGGFTDVMLQNG   59 (232)
T ss_dssp             HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTT
T ss_pred             HHHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhcC
Confidence            45556665 33 34689999999999999999884

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=95.23  E-value=0.029  Score=41.92  Aligned_cols=34  Identities=9%  Similarity=0.278  Sum_probs=27.4

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ...+++..+ .....+|+|||||+|.++..+++..
T Consensus        59 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~   92 (231)
T 1vbf_A           59 GIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV   92 (231)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS
T ss_pred             HHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc
Confidence            345556665 6666799999999999999999987

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=95.22  E-value=0.02  Score=42.67  Aligned_cols=29  Identities=10%  Similarity=-0.040  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcC-CCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKIS-IISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P-~l~~~  174 (178)
                      +..+|+|||+|+|..+..+++++| +.+.+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~   87 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVV   87 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEE
Confidence            346999999999999999999998 55543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=95.19  E-value=0.021  Score=42.56  Aligned_cols=28  Identities=11%  Similarity=0.017  Sum_probs=24.0

Q ss_pred             CCeEEEecCCccHHHHHHHHhcC-CCeEE
Q 037090          147 LNQFVDVADGLGENKNILLTKIS-IISLN  174 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P-~l~~~  174 (178)
                      ..+|+|||+|+|..+..+++++| ..+.+
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~   93 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLI   93 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEE
Confidence            46899999999999999999998 55543

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=95.19  E-value=0.021  Score=43.16  Aligned_cols=30  Identities=10%  Similarity=0.230  Sum_probs=25.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      +..+|+|||||+|..+..+++.+|..+.+-
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~  100 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTT  100 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEE
Confidence            456999999999999999999888766543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=95.18  E-value=0.032  Score=41.06  Aligned_cols=33  Identities=15%  Similarity=0.316  Sum_probs=27.1

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ..+++..+ ..+..+|+|||+|+|.++..+++..
T Consensus        67 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~   99 (210)
T 3lbf_A           67 ARMTELLE-LTPQSRVLEIGTGSGYQTAILAHLV   99 (210)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS
T ss_pred             HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHhC
Confidence            44556666 6677899999999999999999984

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=95.12  E-value=0.033  Score=44.23  Aligned_cols=35  Identities=11%  Similarity=0.231  Sum_probs=28.8

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ..+++..+ ..+..+|+|||||.|.++..++++.+.
T Consensus        65 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~   99 (317)
T 1dl5_A           65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGE   99 (317)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCT
T ss_pred             HHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCC
Confidence            44556665 666679999999999999999999885

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=95.12  E-value=0.042  Score=39.30  Aligned_cols=32  Identities=22%  Similarity=0.125  Sum_probs=25.9

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      .+++..+ .....+|+|||||.|.++..++++.
T Consensus        24 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~   55 (192)
T 1l3i_A           24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV   55 (192)
T ss_dssp             HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS
T ss_pred             HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc
Confidence            3445555 5666799999999999999999887

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=95.10  E-value=0.014  Score=45.32  Aligned_cols=35  Identities=20%  Similarity=0.432  Sum_probs=28.2

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ...+++..+ ..+..+|+|||+|+|.++..++++..
T Consensus        18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~   52 (255)
T 3tqs_A           18 LQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTECD   52 (255)
T ss_dssp             HHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTSS
T ss_pred             HHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhCC
Confidence            345666666 66677999999999999999998863

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=95.07  E-value=0.015  Score=43.57  Aligned_cols=29  Identities=17%  Similarity=0.188  Sum_probs=24.1

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      .+..+|+|||||+|.++..+++++|++.+
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~   67 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFGDTAG   67 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHSEEEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCCcEEE
Confidence            34578999999999999999999885433

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=95.05  E-value=0.0081  Score=46.66  Aligned_cols=27  Identities=15%  Similarity=0.071  Sum_probs=23.1

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      ..+|+|||||+|.++..+++++.++-|
T Consensus        40 ~~~vLDvGcGtG~~~~~l~~~~~~v~g   66 (257)
T 4hg2_A           40 RGDALDCGCGSGQASLGLAEFFERVHA   66 (257)
T ss_dssp             SSEEEEESCTTTTTHHHHHTTCSEEEE
T ss_pred             CCCEEEEcCCCCHHHHHHHHhCCEEEE
Confidence            468999999999999999998876544

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=95.04  E-value=0.054  Score=38.78  Aligned_cols=35  Identities=11%  Similarity=0.083  Sum_probs=24.3

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      +++.+.......+|+|||||+|.++..++++ +..+
T Consensus        35 ~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~-~~~~   69 (187)
T 2fhp_A           35 IFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDK   69 (187)
T ss_dssp             HHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSE
T ss_pred             HHHHHHhhcCCCCEEEeCCccCHHHHHHHHc-CCCE
Confidence            3344321344579999999999999998874 4333

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=95.01  E-value=0.024  Score=43.63  Aligned_cols=46  Identities=17%  Similarity=0.188  Sum_probs=28.3

Q ss_pred             HHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          121 LFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       121 ~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      .|.......+..... +++.+  ..+..+|+|||||+|.++..+++..+
T Consensus        98 ~fgtg~~~tt~~~~~-~l~~~--~~~~~~VLDiGcG~G~l~~~la~~g~  143 (254)
T 2nxc_A           98 AFGTGHHETTRLALK-ALARH--LRPGDKVLDLGTGSGVLAIAAEKLGG  143 (254)
T ss_dssp             ----CCSHHHHHHHH-HHHHH--CCTTCEEEEETCTTSHHHHHHHHTTC
T ss_pred             cccCCCCHHHHHHHH-HHHHh--cCCCCEEEEecCCCcHHHHHHHHhCC
Confidence            455544444444333 33333  23457999999999999999998877

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=94.99  E-value=0.036  Score=44.00  Aligned_cols=34  Identities=12%  Similarity=0.202  Sum_probs=28.2

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ...+++..+ .....+|+|||+|+|.++..++++.
T Consensus        39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~~   72 (295)
T 3gru_A           39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKNA   72 (295)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS
T ss_pred             HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhcC
Confidence            455667766 6667899999999999999999984

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=94.96  E-value=0.025  Score=41.81  Aligned_cols=28  Identities=25%  Similarity=0.140  Sum_probs=23.7

Q ss_pred             CCeEEEecCCccHHHHHHHHhcC-CCeEE
Q 037090          147 LNQFVDVADGLGENKNILLTKIS-IISLN  174 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P-~l~~~  174 (178)
                      ..+|+|||+|.|..+..++++.| ..+.+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~   85 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVV   85 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEE
Confidence            46899999999999999999988 54443

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=94.96  E-value=0.026  Score=43.21  Aligned_cols=29  Identities=7%  Similarity=0.024  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcC-CCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKIS-IISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P-~l~~~  174 (178)
                      +..+|+|||+|+|..+..+++++| ..+.+
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~   92 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLL   92 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEE
Confidence            357999999999999999999998 55544

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=94.95  E-value=0.024  Score=43.86  Aligned_cols=32  Identities=13%  Similarity=0.160  Sum_probs=25.0

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ..+++.++ .. ..+|+|||||+|.++..++++.
T Consensus        59 ~~~l~~~~-~~-~~~vLDiGcG~G~~~~~l~~~~   90 (285)
T 4htf_A           59 DRVLAEMG-PQ-KLRVLDAGGGEGQTAIKMAERG   90 (285)
T ss_dssp             HHHHHHTC-SS-CCEEEEETCTTCHHHHHHHHTT
T ss_pred             HHHHHhcC-CC-CCEEEEeCCcchHHHHHHHHCC
Confidence            34556655 33 4689999999999999999983

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=94.94  E-value=0.031  Score=42.58  Aligned_cols=37  Identities=16%  Similarity=-0.003  Sum_probs=27.0

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh--cCCCe
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTK--ISIIS  172 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~--~P~l~  172 (178)
                      ..+++..+ -.+..+|+|+|||+|.++..++++  +|..+
T Consensus        41 ~~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~   79 (250)
T 1o9g_A           41 QRALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQ   79 (250)
T ss_dssp             HHHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEE
T ss_pred             HHHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCe
Confidence            33444444 334568999999999999999998  66543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=94.87  E-value=0.027  Score=42.10  Aligned_cols=29  Identities=3%  Similarity=-0.118  Sum_probs=24.2

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhc-CCCe
Q 037090          144 FERLNQFVDVADGLGENKNILLTKI-SIIS  172 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~  172 (178)
                      ..+..+|+|+|||+|.++..+++++ |..+
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~  100 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGK  100 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeE
Confidence            5566799999999999999999986 4444

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=94.87  E-value=0.02  Score=44.72  Aligned_cols=30  Identities=17%  Similarity=0.155  Sum_probs=24.9

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      .++|+|||||.|..+.++++++|..+.+.+
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~v  105 (275)
T 1iy9_A           76 PEHVLVVGGGDGGVIREILKHPSVKKATLV  105 (275)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEE
T ss_pred             CCEEEEECCchHHHHHHHHhCCCCceEEEE
Confidence            478999999999999999988776665543

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=94.85  E-value=0.022  Score=44.57  Aligned_cols=38  Identities=13%  Similarity=0.051  Sum_probs=27.8

Q ss_pred             HhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090          132 IVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      .....+++.++ ..+ .+|+|||||+|.++..++++...+
T Consensus        70 ~~~~~~~~~~~-~~~-~~vLDlGcG~G~~~~~l~~~~~~v  107 (299)
T 3g2m_A           70 SEAREFATRTG-PVS-GPVLELAAGMGRLTFPFLDLGWEV  107 (299)
T ss_dssp             HHHHHHHHHHC-CCC-SCEEEETCTTTTTHHHHHTTTCCE
T ss_pred             HHHHHHHHhhC-CCC-CcEEEEeccCCHHHHHHHHcCCeE
Confidence            33455666665 333 389999999999999999985443

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=94.83  E-value=0.04  Score=42.27  Aligned_cols=27  Identities=22%  Similarity=0.338  Sum_probs=24.1

Q ss_pred             CC-CCCeEEEecCCccHHHHHHHHhcCC
Q 037090          144 FE-RLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       144 ~~-~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .. +..+|+|||+|+|.++..++++.|.
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~   73 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA   73 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCC
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCC
Confidence            55 6789999999999999999999874

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=94.79  E-value=0.037  Score=41.84  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=25.3

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ..+++... ..+..+|+|||||+|.++..++++.
T Consensus        31 ~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~~   63 (252)
T 1wzn_A           31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAERG   63 (252)
T ss_dssp             HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTT
T ss_pred             HHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHCC
Confidence            34455544 4456799999999999999999873

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=94.75  E-value=0.027  Score=44.68  Aligned_cols=30  Identities=10%  Similarity=0.103  Sum_probs=25.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      +.++|+|||||.|..+..+++..|..+.+.
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~  124 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDL  124 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEE
Confidence            447899999999999999998877666554

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=94.75  E-value=0.016  Score=42.82  Aligned_cols=33  Identities=18%  Similarity=0.055  Sum_probs=24.5

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      .+++.+. .....+|+|||||+|.++..++++..
T Consensus        43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~   75 (227)
T 3e8s_A           43 AILLAIL-GRQPERVLDLGCGEGWLLRALADRGI   75 (227)
T ss_dssp             HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTTTC
T ss_pred             HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHCCC
Confidence            3444444 33347999999999999999998843

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=94.72  E-value=0.039  Score=41.67  Aligned_cols=29  Identities=3%  Similarity=0.020  Sum_probs=24.2

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcC-CCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKIS-IISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P-~l~~~  174 (178)
                      +..+|+|||+|+|..+..+++++| ..+.+
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~   89 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKIL   89 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEE
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEE
Confidence            346899999999999999999998 44443

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=94.69  E-value=0.027  Score=43.14  Aligned_cols=31  Identities=13%  Similarity=0.208  Sum_probs=25.7

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ....+|+|||+|.|.++..+++++|..+.+.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~  114 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFG  114 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEE
Confidence            3456899999999999999999988766443

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=94.67  E-value=0.035  Score=40.84  Aligned_cols=26  Identities=12%  Similarity=0.152  Sum_probs=21.8

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          144 FERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      +....+|+|||||.|.++..++++..
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~~   66 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAAGF   66 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHTTC
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHcCC
Confidence            34457999999999999999998843

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=94.66  E-value=0.011  Score=45.12  Aligned_cols=34  Identities=12%  Similarity=0.295  Sum_probs=27.9

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ...+++..+ ..+..+|+|||+|.|.++..++++.
T Consensus        18 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~   51 (245)
T 1yub_A           18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS   51 (245)
T ss_dssp             HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS
T ss_pred             HHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC
Confidence            345666666 6666799999999999999999986

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=94.66  E-value=0.078  Score=39.86  Aligned_cols=32  Identities=13%  Similarity=0.149  Sum_probs=26.9

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      ..+++..+ .....+|+|||+|+|.++..++++
T Consensus        81 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~  112 (248)
T 2yvl_A           81 FYIALKLN-LNKEKRVLEFGTGSGALLAVLSEV  112 (248)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh
Confidence            45666666 666789999999999999999998

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=94.61  E-value=0.03  Score=41.86  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=21.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCC
Q 037090          146 RLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      +..+|+|||||+|.++..++++..+
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~~   61 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFKN   61 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCCc
Confidence            4568999999999999999988543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=94.58  E-value=0.028  Score=45.34  Aligned_cols=31  Identities=13%  Similarity=0.136  Sum_probs=25.9

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      .+.++|+|||||.|..+..++++.|..+.+.
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~  149 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDM  149 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEE
Confidence            3457999999999999999999877766554

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=94.55  E-value=0.081  Score=38.70  Aligned_cols=29  Identities=17%  Similarity=0.048  Sum_probs=22.2

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ....+|+|||||+|.++..+++ +|..+.+
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~   87 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHK-LGAKSVL   87 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHH-TTCSEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHH-CCCCEEE
Confidence            3457999999999999999776 4554443

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=94.55  E-value=0.034  Score=41.03  Aligned_cols=29  Identities=10%  Similarity=-0.071  Sum_probs=20.5

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHH
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILL  165 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~  165 (178)
                      +++.+.......+|+|||||+|.++..+.
T Consensus        58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~   86 (215)
T 2zfu_A           58 IARDLRQRPASLVVADFGCGDCRLASSIR   86 (215)
T ss_dssp             HHHHHHTSCTTSCEEEETCTTCHHHHHCC
T ss_pred             HHHHHhccCCCCeEEEECCcCCHHHHHhh
Confidence            44443313445689999999999988773

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=94.53  E-value=0.023  Score=44.98  Aligned_cols=35  Identities=17%  Similarity=0.252  Sum_probs=27.9

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ...+++..+ ..+..+|+|||||+|.++..++++..
T Consensus        31 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~~~   65 (299)
T 2h1r_A           31 LDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPLAK   65 (299)
T ss_dssp             HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTTSS
T ss_pred             HHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhcCC
Confidence            455666666 66667999999999999999998744

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=94.51  E-value=0.056  Score=42.13  Aligned_cols=26  Identities=12%  Similarity=0.153  Sum_probs=19.8

Q ss_pred             CCeEEEecCCccHHHH----HHHHhcCCCe
Q 037090          147 LNQFVDVADGLGENKN----ILLTKISIIS  172 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~----~i~~~~P~l~  172 (178)
                      ..+|+|||||+|.++.    .++.++|+.+
T Consensus        53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~   82 (292)
T 2aot_A           53 EIKILSIGGGAGEIDLQILSKVQAQYPGVC   82 (292)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCE
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHhhCCCce
Confidence            4589999999997654    4556778874

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=94.47  E-value=0.027  Score=44.78  Aligned_cols=31  Identities=13%  Similarity=0.098  Sum_probs=26.0

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      .+.++|+|||||+|..+..++++.|..+.+.
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~  124 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQ  124 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEE
Confidence            3457999999999999999999888766554

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=94.46  E-value=0.046  Score=41.87  Aligned_cols=29  Identities=7%  Similarity=-0.126  Sum_probs=24.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcC-CCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKIS-IISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P-~l~~~  174 (178)
                      +.++|+|||+|+|..+..+++..| +.+.+
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~  108 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKIL  108 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEE
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEE
Confidence            346999999999999999999998 55443

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=94.35  E-value=0.027  Score=44.53  Aligned_cols=29  Identities=14%  Similarity=0.075  Sum_probs=24.7

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ..+|+|||||.|..+..+++..|..+.+.
T Consensus        91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~  119 (296)
T 1inl_A           91 PKKVLIIGGGDGGTLREVLKHDSVEKAIL  119 (296)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHhcCCCCEEEE
Confidence            36899999999999999999877766554

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=94.35  E-value=0.029  Score=44.90  Aligned_cols=29  Identities=17%  Similarity=0.112  Sum_probs=24.6

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      .++|+|||||+|..+..+++..|..+.+.
T Consensus       117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~  145 (321)
T 2pt6_A          117 PKNVLVVGGGDGGIIRELCKYKSVENIDI  145 (321)
T ss_dssp             CCEEEEEECTTCHHHHHHTTCTTCCEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHcCCCCEEEE
Confidence            46899999999999999998777766554

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=94.34  E-value=0.055  Score=41.13  Aligned_cols=27  Identities=7%  Similarity=-0.145  Sum_probs=23.2

Q ss_pred             CeEEEecCCccHHHHHHHHh----cCCCeEE
Q 037090          148 NQFVDVADGLGENKNILLTK----ISIISLN  174 (178)
Q Consensus       148 ~~vVDVGGg~G~~~~~i~~~----~P~l~~~  174 (178)
                      .+|+|||+|+|..+..+++.    +|..+.+
T Consensus        83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~  113 (236)
T 2bm8_A           83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVI  113 (236)
T ss_dssp             SEEEEECCTTSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEE
Confidence            58999999999999999998    6776544

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=94.33  E-value=0.085  Score=42.03  Aligned_cols=39  Identities=15%  Similarity=0.145  Sum_probs=30.1

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc-CCCeEE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKI-SIISLN  174 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~~~  174 (178)
                      ..+++..+ .....+|+|||+|+|.++..+++.. |..+.+
T Consensus        95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~  134 (336)
T 2b25_A           95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVI  134 (336)
T ss_dssp             HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEE
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEE
Confidence            44555556 6667899999999999999999985 655443

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=94.32  E-value=0.031  Score=43.86  Aligned_cols=30  Identities=17%  Similarity=0.113  Sum_probs=25.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      +.++|+|||||.|..+..+++..|..+.+.
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~  107 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDI  107 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEE
Confidence            447999999999999999998877766554

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=94.29  E-value=0.032  Score=44.47  Aligned_cols=29  Identities=14%  Similarity=0.122  Sum_probs=24.8

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      .++|+|||||.|..+..++++.|..+.+.
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~  106 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPTVEKAVM  106 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCCCCEEEE
Confidence            47999999999999999999877766554

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=94.28  E-value=0.11  Score=39.09  Aligned_cols=28  Identities=11%  Similarity=0.118  Sum_probs=23.4

Q ss_pred             CCeEEEecCCccHHHHHHHHhcC-CCeEE
Q 037090          147 LNQFVDVADGLGENKNILLTKIS-IISLN  174 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P-~l~~~  174 (178)
                      ..+|+|||+|+|..+..++++.| +.+.+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~   85 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLT   85 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEE
Confidence            44899999999999999999986 55443

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=94.26  E-value=0.048  Score=41.63  Aligned_cols=27  Identities=4%  Similarity=-0.022  Sum_probs=23.3

Q ss_pred             CCeEEEecCCccHHHHHHHHhcC-CCeE
Q 037090          147 LNQFVDVADGLGENKNILLTKIS-IISL  173 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P-~l~~  173 (178)
                      .++|||||+|+|..+..+++..| +.+.
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v   88 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQV   88 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEE
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEE
Confidence            46999999999999999999997 4443

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=94.26  E-value=0.032  Score=40.80  Aligned_cols=25  Identities=24%  Similarity=0.181  Sum_probs=21.2

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCC
Q 037090          147 LNQFVDVADGLGENKNILLTKISII  171 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l  171 (178)
                      ..+|+|||||+|.++..++++..++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v   66 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQI   66 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeE
Confidence            3689999999999999999985443

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=94.25  E-value=0.069  Score=41.98  Aligned_cols=46  Identities=22%  Similarity=0.185  Sum_probs=28.3

Q ss_pred             HHHHHHHHHhhhHHhHHHHHHhcC-CCCCCCeEEEecCCccHHHHHHHHh
Q 037090          119 NNLFNQSMHNHTTIVMKEILETYK-GFERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       119 ~~~F~~~M~~~~~~~~~~~~~~~~-~~~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      .+.|++++...   ....+++... ......+|+|||||+|.++..+++.
T Consensus         9 lr~~~~~~k~~---l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~   55 (313)
T 3bgv_A            9 LRNFNNWMKSV---LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG   55 (313)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT
T ss_pred             hhhccHHHHHH---HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc
Confidence            34566666552   2223333222 1234568999999999999999874

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=94.24  E-value=0.021  Score=44.85  Aligned_cols=32  Identities=13%  Similarity=-0.075  Sum_probs=26.3

Q ss_pred             CCCCCeEEEecCCccHHHHHHH-HhcCCCeEEE
Q 037090          144 FERLNQFVDVADGLGENKNILL-TKISIISLNT  175 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~-~~~P~l~~~v  175 (178)
                      ..+..+|+|||||+|.++..++ ..+|..+.+.
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~g  148 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVG  148 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEE
Confidence            4556789999999999999996 6788877654

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=94.23  E-value=0.075  Score=42.77  Aligned_cols=41  Identities=10%  Similarity=0.037  Sum_probs=32.3

Q ss_pred             hHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc-CCCeEE
Q 037090          133 VMKEILETYKGFERLNQFVDVADGLGENKNILLTKI-SIISLN  174 (178)
Q Consensus       133 ~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~~~  174 (178)
                      .+..++.... +.+...|+|+|||+|.++++++... |..+.+
T Consensus       191 la~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~  232 (354)
T 3tma_A          191 LAQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVY  232 (354)
T ss_dssp             HHHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEE
T ss_pred             HHHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEE
Confidence            3445566666 7777899999999999999999998 765543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=94.21  E-value=0.051  Score=43.83  Aligned_cols=25  Identities=16%  Similarity=0.044  Sum_probs=21.1

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          147 LNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      .++|+|||||+|.++..++++ |..+
T Consensus        67 ~~~VLDvGcG~G~~~~~la~~-g~~~   91 (349)
T 3q7e_A           67 DKVVLDVGSGTGILCMFAAKA-GARK   91 (349)
T ss_dssp             TCEEEEESCTTSHHHHHHHHT-TCSE
T ss_pred             CCEEEEEeccchHHHHHHHHC-CCCE
Confidence            468999999999999999988 4433

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=94.19  E-value=0.034  Score=43.53  Aligned_cols=28  Identities=11%  Similarity=0.149  Sum_probs=23.9

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      .++|+|||||.|..+..++++ |..+.+.
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~-~~~~v~~  103 (281)
T 1mjf_A           76 PKRVLVIGGGDGGTVREVLQH-DVDEVIM  103 (281)
T ss_dssp             CCEEEEEECTTSHHHHHHTTS-CCSEEEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhC-CCCEEEE
Confidence            468999999999999999998 7766554

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=94.17  E-value=0.034  Score=40.73  Aligned_cols=26  Identities=8%  Similarity=-0.124  Sum_probs=22.4

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ....+|+|||||+|.++..++++.+.
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~   66 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFP   66 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCC
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCC
Confidence            34568999999999999999998773

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=94.16  E-value=0.037  Score=44.21  Aligned_cols=29  Identities=14%  Similarity=0.130  Sum_probs=24.9

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      .++|+|||||.|..+..+++..|..+.+.
T Consensus       109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~  137 (314)
T 2b2c_A          109 PKRVLIIGGGDGGILREVLKHESVEKVTM  137 (314)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHHcCCCCEEEE
Confidence            46899999999999999999877766554

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=94.14  E-value=0.054  Score=40.39  Aligned_cols=29  Identities=7%  Similarity=-0.049  Sum_probs=23.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcC-CCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKIS-IISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P-~l~~~  174 (178)
                      +..+|+|||+|+|..+..++++.| ..+.+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~   87 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLL   87 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEE
Confidence            356999999999999999999875 55443

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=94.11  E-value=0.029  Score=43.43  Aligned_cols=32  Identities=19%  Similarity=0.155  Sum_probs=24.2

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      +++.++ .....+|+|||||.|.++..++++..
T Consensus       112 ~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~g~  143 (286)
T 3m70_A          112 VVDAAK-IISPCKVLDLGCGQGRNSLYLSLLGY  143 (286)
T ss_dssp             HHHHHH-HSCSCEEEEESCTTCHHHHHHHHTTC
T ss_pred             HHHHhh-ccCCCcEEEECCCCCHHHHHHHHCCC
Confidence            444443 33467899999999999999999843

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=94.10  E-value=0.067  Score=40.58  Aligned_cols=29  Identities=10%  Similarity=-0.023  Sum_probs=24.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcC-CCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKIS-IISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P-~l~~~  174 (178)
                      +.++|+|||+|+|..+..++++.| +.+.+
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~   99 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKIT   99 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEE
Confidence            356999999999999999999988 54443

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=94.09  E-value=0.065  Score=39.69  Aligned_cols=24  Identities=21%  Similarity=0.235  Sum_probs=20.9

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhc
Q 037090          145 ERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      .+..+|+|||||+|.++..++++.
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~   52 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKG   52 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCC
Confidence            345689999999999999999983

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=94.09  E-value=0.066  Score=40.01  Aligned_cols=21  Identities=19%  Similarity=0.302  Sum_probs=19.1

Q ss_pred             CCeEEEecCCccHHHHHHHHh
Q 037090          147 LNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      ..+|+|||||+|.++..++++
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~   54 (243)
T 3d2l_A           34 GKRIADIGCGTGTATLLLADH   54 (243)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT
T ss_pred             CCeEEEecCCCCHHHHHHhhC
Confidence            479999999999999999877

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=94.02  E-value=0.057  Score=47.34  Aligned_cols=57  Identities=18%  Similarity=0.214  Sum_probs=36.3

Q ss_pred             chhhhhccChHHHHHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090          107 DGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       107 ~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      ..||.++++|..-..|.+|+...   ..+...+.-+ -.+.++|+|||+|+|-++...+++
T Consensus       322 ~tYevFEkD~vKy~~Ye~AI~~A---l~d~~~~~~~-~~~~~vVldVGaGrGpLv~~al~A  378 (637)
T 4gqb_A          322 QTYEVFEKDPIKYSQYQQAIYKC---LLDRVPEEEK-DTNVQVLMVLGAGRGPLVNASLRA  378 (637)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH---HHHHSCGGGT-TTCEEEEEEESCTTSHHHHHHHHH
T ss_pred             hhhhhhcCChhhHHHHHHHHHHH---HHHhhhhccc-cCCCcEEEEECCCCcHHHHHHHHH
Confidence            45899999998888888876432   1111111112 234568999999999995544443

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=94.02  E-value=0.059  Score=40.68  Aligned_cols=28  Identities=7%  Similarity=-0.025  Sum_probs=23.6

Q ss_pred             CCeEEEecCCccHHHHHHHHhcC-CCeEE
Q 037090          147 LNQFVDVADGLGENKNILLTKIS-IISLN  174 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P-~l~~~  174 (178)
                      ..+|+|||+|.|..+..+++..| +.+.+
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~  101 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQII  101 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEE
Confidence            46899999999999999999988 44443

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=94.01  E-value=0.041  Score=41.24  Aligned_cols=24  Identities=21%  Similarity=0.106  Sum_probs=21.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcC
Q 037090          146 RLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      +..+|+|||||+|.++..++++..
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~~~   76 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRTGY   76 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC
T ss_pred             CCCeEEEEcCCCCHHHHHHHHcCC
Confidence            456999999999999999999844

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=94.00  E-value=0.11  Score=38.54  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=22.0

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhc
Q 037090          144 FERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      .....+|+|||+|+|.++..+++..
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~  102 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKM  102 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHh
Confidence            4455799999999999999999987

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=93.95  E-value=0.059  Score=43.95  Aligned_cols=29  Identities=10%  Similarity=0.071  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHhc-CCCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKI-SIISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~-P~l~~~  174 (178)
                      +..+|+|||||+|..+..+++++ |..+.+
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~  112 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVI  112 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEE
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEE
Confidence            45789999999999999999998 766544

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=93.91  E-value=0.051  Score=40.96  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=20.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHhc
Q 037090          146 RLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      +..+|+|||||+|.++..+++++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~  101 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL  101 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc
Confidence            46799999999999999999887

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=93.86  E-value=0.13  Score=41.98  Aligned_cols=38  Identities=8%  Similarity=-0.018  Sum_probs=27.9

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc-CCCe
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKI-SIIS  172 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~  172 (178)
                      +..+++..+ .....+|+|+|||+|.++.++++++ |..+
T Consensus        28 ~~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~   66 (421)
T 2ih2_A           28 VDFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYR   66 (421)
T ss_dssp             HHHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSE
T ss_pred             HHHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCe
Confidence            344555555 3344599999999999999999987 4443

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=93.81  E-value=0.056  Score=42.00  Aligned_cols=30  Identities=17%  Similarity=0.015  Sum_probs=25.4

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      +.+..+|+|+|||+|.++..++++.|..+.
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V  146 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLV  146 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEE
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEE
Confidence            455679999999999999999999885443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=93.70  E-value=0.059  Score=43.04  Aligned_cols=21  Identities=19%  Similarity=0.091  Sum_probs=19.0

Q ss_pred             CCeEEEecCCccHHHHHHHHh
Q 037090          147 LNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      .++|+|||||+|.++..++++
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~   59 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKH   59 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT
T ss_pred             CCEEEEecCccHHHHHHHHHC
Confidence            468999999999999998886

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=93.65  E-value=0.042  Score=41.37  Aligned_cols=24  Identities=8%  Similarity=0.069  Sum_probs=20.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcC
Q 037090          146 RLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ...+|+|||||+|.++..+++..+
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~   83 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPI   83 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCC
Confidence            346899999999999999976544

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=93.61  E-value=0.078  Score=41.53  Aligned_cols=32  Identities=22%  Similarity=0.074  Sum_probs=24.6

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      ..+.+... +.+..+|||||||+|.++..++++
T Consensus        72 ~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~  103 (276)
T 2wa2_A           72 AWIDERGG-VELKGTVVDLGCGRGSWSYYAASQ  103 (276)
T ss_dssp             HHHHHTTS-CCCCEEEEEESCTTCHHHHHHHTS
T ss_pred             HHHHHcCC-CCCCCEEEEeccCCCHHHHHHHHc
Confidence            34444422 556679999999999999999887

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=93.60  E-value=0.092  Score=39.01  Aligned_cols=30  Identities=13%  Similarity=0.130  Sum_probs=24.1

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhc-CCCeE
Q 037090          144 FERLNQFVDVADGLGENKNILLTKI-SIISL  173 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~~  173 (178)
                      .....+|+|||+|+|..+..+++.. |..+.
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v  105 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKV  105 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEE
Confidence            3455799999999999999999986 54443

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=93.57  E-value=0.14  Score=41.68  Aligned_cols=26  Identities=15%  Similarity=-0.041  Sum_probs=22.3

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          144 FERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ..+.++|+|||||+|.++..++++.+
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g~   86 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAGA   86 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTTC
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcCC
Confidence            45567999999999999999999844

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=93.50  E-value=0.09  Score=40.88  Aligned_cols=32  Identities=19%  Similarity=0.087  Sum_probs=24.5

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      ..+.+... +....+|||||||+|.++..++++
T Consensus        64 ~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~   95 (265)
T 2oxt_A           64 AWMEERGY-VELTGRVVDLGCGRGGWSYYAASR   95 (265)
T ss_dssp             HHHHHHTS-CCCCEEEEEESCTTSHHHHHHHTS
T ss_pred             HHHHHcCC-CCCCCEEEEeCcCCCHHHHHHHHc
Confidence            34444422 556679999999999999999887

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=93.46  E-value=0.071  Score=41.56  Aligned_cols=24  Identities=8%  Similarity=0.001  Sum_probs=20.3

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhc
Q 037090          145 ERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ....+|+|||+|+|.++..+++..
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~  101 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAG  101 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTT
T ss_pred             cCCCeEEEecccccHHHHHHHHcC
Confidence            345689999999999999888864

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=93.38  E-value=0.17  Score=40.14  Aligned_cols=32  Identities=25%  Similarity=0.272  Sum_probs=25.9

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      .....+|+|||||+|.++..++.+.|..+.+-
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~g  151 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNV  151 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEE
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEE
Confidence            66678999999999988877777778776553

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=93.37  E-value=0.11  Score=41.08  Aligned_cols=33  Identities=12%  Similarity=0.330  Sum_probs=26.3

Q ss_pred             HHHHHHhcCCCC-CCCeEEEecCCccHHHHHHHHh
Q 037090          134 MKEILETYKGFE-RLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       134 ~~~~~~~~~~~~-~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      ...+++.+. .. ...+++|||||+|.++..++++
T Consensus        73 l~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~  106 (291)
T 3hp7_A           73 LEKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN  106 (291)
T ss_dssp             HHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT
T ss_pred             HHHHHHhcC-CCccccEEEecCCCccHHHHHHHhC
Confidence            456677776 44 3569999999999999988887

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=93.32  E-value=0.071  Score=39.02  Aligned_cols=25  Identities=16%  Similarity=-0.041  Sum_probs=21.3

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcC
Q 037090          145 ERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ....+|+|||||+|.++..++++.+
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~   72 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGA   72 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTC
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCC
Confidence            3457899999999999999998854

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=93.26  E-value=0.084  Score=38.51  Aligned_cols=23  Identities=13%  Similarity=-0.096  Sum_probs=20.3

Q ss_pred             CCCCeEEEecCCccHHHHHHHHh
Q 037090          145 ERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      ....+|+|||||+|.++..++++
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~   72 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL   72 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc
Confidence            34578999999999999999987

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=93.24  E-value=0.053  Score=40.55  Aligned_cols=23  Identities=9%  Similarity=0.144  Sum_probs=20.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHhc
Q 037090          146 RLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ...+|+|||||+|.++..++++.
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~~   70 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQA   70 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGS
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcC
Confidence            44689999999999999999883

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=93.16  E-value=0.058  Score=39.76  Aligned_cols=23  Identities=17%  Similarity=0.124  Sum_probs=19.9

Q ss_pred             CCeEEEecCCccHHHHHHHHhcC
Q 037090          147 LNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ..+|+|+|||+|.++..++++.+
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~~   76 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQA   76 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC
T ss_pred             CCeEEEcCCccCHHHHHHHHccC
Confidence            36899999999999999887754

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=93.12  E-value=0.058  Score=40.55  Aligned_cols=22  Identities=23%  Similarity=0.161  Sum_probs=20.2

Q ss_pred             CCeEEEecCCccHHHHHHHHhc
Q 037090          147 LNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ..+|+|||||+|.++..++++.
T Consensus        79 ~~~vLD~gcG~G~~~~~la~~~  100 (241)
T 3gdh_A           79 CDVVVDAFCGVGGNTIQFALTG  100 (241)
T ss_dssp             CSEEEETTCTTSHHHHHHHHTT
T ss_pred             CCEEEECccccCHHHHHHHHcC
Confidence            4689999999999999999975

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=93.06  E-value=0.14  Score=45.49  Aligned_cols=51  Identities=6%  Similarity=0.067  Sum_probs=36.2

Q ss_pred             chhhhhccChHHHHHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHH
Q 037090          107 DGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNIL  164 (178)
Q Consensus       107 ~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i  164 (178)
                      ..||.+++++.+-..|.+|+...       +.+..++-.+.++|+|||+|+|.++...
T Consensus       377 ~tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~a  427 (745)
T 3ua3_A          377 GVYNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKI  427 (745)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHH
T ss_pred             HHHHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHH
Confidence            45899999999988898887653       1112221123468999999999997543

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=92.96  E-value=0.047  Score=40.90  Aligned_cols=29  Identities=10%  Similarity=0.123  Sum_probs=21.5

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      ++.... +.+ .+|+|||||+|.++..+++.
T Consensus        59 ~~~~~~-~~~-~~vLDiGcG~G~~~~~l~~~   87 (235)
T 3lcc_A           59 LVDTSS-LPL-GRALVPGCGGGHDVVAMASP   87 (235)
T ss_dssp             HHHTTC-SCC-EEEEEETCTTCHHHHHHCBT
T ss_pred             HHHhcC-CCC-CCEEEeCCCCCHHHHHHHhC
Confidence            344333 443 49999999999999999763

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=92.96  E-value=0.068  Score=41.50  Aligned_cols=28  Identities=14%  Similarity=0.010  Sum_probs=23.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      +.++|+|||||+|..+.++++. | .+.+.
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~   99 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D-THIDF   99 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S-CEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C-CEEEE
Confidence            3479999999999999999988 7 55443

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=92.92  E-value=0.13  Score=37.17  Aligned_cols=22  Identities=18%  Similarity=0.099  Sum_probs=19.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHh
Q 037090          146 RLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      +..+|+|+|||+|.++..++++
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~   65 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSR   65 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT
T ss_pred             CCCEEEEeCCCcCHHHHHHHHC
Confidence            3468999999999999988875

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=92.86  E-value=0.13  Score=38.14  Aligned_cols=25  Identities=4%  Similarity=-0.041  Sum_probs=22.1

Q ss_pred             CCCCCeEEEecCC-ccHHHHHHHHhc
Q 037090          144 FERLNQFVDVADG-LGENKNILLTKI  168 (178)
Q Consensus       144 ~~~~~~vVDVGGg-~G~~~~~i~~~~  168 (178)
                      ..+..+|+||||| +|.++..+++++
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~   78 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF   78 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc
Confidence            3456799999999 999999999986

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=92.79  E-value=0.066  Score=40.90  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=20.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHhc
Q 037090          146 RLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      +..+|+|||||+|.++..++++.
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~   76 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERG   76 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcC
Confidence            45799999999999999999874

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=92.73  E-value=0.073  Score=39.25  Aligned_cols=23  Identities=22%  Similarity=0.150  Sum_probs=20.0

Q ss_pred             CCeEEEecCCccHHHHHHHHhcC
Q 037090          147 LNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ..+|+|+|||+|.++..++++..
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~~   77 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRYA   77 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC
T ss_pred             CCeEEEeCCCcCHHHHHHHhcCC
Confidence            36899999999999999888764

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=92.70  E-value=0.15  Score=37.97  Aligned_cols=26  Identities=19%  Similarity=0.244  Sum_probs=22.3

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          144 FERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      .....+|+|||+|+|.++..+++..+
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~  107 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIK  107 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcc
Confidence            44557999999999999999998765

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=92.59  E-value=0.063  Score=46.24  Aligned_cols=27  Identities=19%  Similarity=-0.041  Sum_probs=22.5

Q ss_pred             CeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          148 NQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       148 ~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      -+|+|||||.|.++..++++--.+.|+
T Consensus        68 ~~vLDvGCG~G~~~~~la~~ga~V~gi   94 (569)
T 4azs_A           68 LNVLDLGCAQGFFSLSLASKGATIVGI   94 (569)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCEEEEE
T ss_pred             CeEEEECCCCcHHHHHHHhCCCEEEEE
Confidence            479999999999999999986655543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=92.41  E-value=0.17  Score=38.61  Aligned_cols=34  Identities=15%  Similarity=0.154  Sum_probs=26.2

Q ss_pred             HHHHHhcCC--CCCCCeEEEecCCccHHHHHHHHhc
Q 037090          135 KEILETYKG--FERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       135 ~~~~~~~~~--~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ..++..++.  +....+|+|||+|+|..+..+++..
T Consensus        63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v   98 (232)
T 3id6_C           63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDII   98 (232)
T ss_dssp             HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred             HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHh
Confidence            344554441  5667899999999999999999875

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=92.40  E-value=0.077  Score=40.87  Aligned_cols=25  Identities=4%  Similarity=-0.231  Sum_probs=21.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCC
Q 037090          146 RLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ...+|+|||||.|..+..++++--+
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G~~   92 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRGHT   92 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTCE
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCCCe
Confidence            4568999999999999999987433

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=92.34  E-value=0.081  Score=42.03  Aligned_cols=24  Identities=17%  Similarity=0.016  Sum_probs=21.3

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHh
Q 037090          144 FERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      +....+|||||||+|..+..++++
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~  103 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL  103 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc
Confidence            455679999999999999999988

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=92.22  E-value=0.17  Score=38.68  Aligned_cols=36  Identities=8%  Similarity=0.071  Sum_probs=27.7

Q ss_pred             HHHHHhcCC--CCCCCeEEEecCCccHHHHHHHHhc-CC
Q 037090          135 KEILETYKG--FERLNQFVDVADGLGENKNILLTKI-SI  170 (178)
Q Consensus       135 ~~~~~~~~~--~~~~~~vVDVGGg~G~~~~~i~~~~-P~  170 (178)
                      ..++...+.  .....+|+|||+|+|.++..+++.- |.
T Consensus        64 a~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~  102 (233)
T 4df3_A           64 AALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPR  102 (233)
T ss_dssp             HHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTT
T ss_pred             HHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCC
Confidence            334444442  6778899999999999999999875 54

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=92.21  E-value=0.18  Score=39.97  Aligned_cols=52  Identities=10%  Similarity=-0.072  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          118 INNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       118 ~~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ....|..+.-..+......+....+ .....+|+|+|+|.|..+..+++..+.
T Consensus        91 ~~~~~~~G~~~~qd~~s~l~~~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~  142 (315)
T 1ixk_A           91 STPEFLTGLIYIQEASSMYPPVALD-PKPGEIVADMAAAPGGKTSYLAQLMRN  142 (315)
T ss_dssp             GSHHHHTTSEEECCHHHHHHHHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTT
T ss_pred             cChhHhcceEEEeCHHHHHHHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCC
Confidence            3345555544333333222334445 556679999999999999999999754

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=92.19  E-value=0.075  Score=38.67  Aligned_cols=20  Identities=25%  Similarity=0.320  Sum_probs=18.4

Q ss_pred             eEEEecCCccHHHHHHHHhc
Q 037090          149 QFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       149 ~vVDVGGg~G~~~~~i~~~~  168 (178)
                      +|+|||||.|.++..++++.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~~   51 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASLG   51 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTTT
T ss_pred             CEEEECCCCCHhHHHHHhCC
Confidence            99999999999999998873

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=92.11  E-value=0.18  Score=37.34  Aligned_cols=21  Identities=24%  Similarity=0.148  Sum_probs=18.0

Q ss_pred             CCeEEEecCCccHHHHHHHHh
Q 037090          147 LNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      ..+|+|||||+|.++..++++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~   68 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK   68 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC
T ss_pred             CCcEEEeCCCCCHHHHHHHHH
Confidence            568999999999999887654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=92.09  E-value=0.098  Score=40.70  Aligned_cols=26  Identities=15%  Similarity=0.066  Sum_probs=23.0

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .+..+|+|+|||+|.++..++++.+.
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~  149 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA  149 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC
Confidence            34579999999999999999999876

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=91.90  E-value=0.12  Score=42.04  Aligned_cols=26  Identities=15%  Similarity=-0.118  Sum_probs=22.9

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          144 FERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      +.+..+|+|+|||+|.+++.+++..+
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~  240 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRY  240 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTC
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCC
Confidence            34457899999999999999999988

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=91.83  E-value=0.15  Score=41.33  Aligned_cols=28  Identities=4%  Similarity=-0.161  Sum_probs=24.1

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      .++|+||| |+|.++..++++.|..+++.
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~  200 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLSGLPKRIAV  200 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHHTCCSEEEE
T ss_pred             CCEEEEEC-CCCHHHHHHHHhCCCCEEEE
Confidence            47999999 99999999999988666554

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=91.71  E-value=0.12  Score=42.31  Aligned_cols=23  Identities=17%  Similarity=0.069  Sum_probs=19.1

Q ss_pred             CCeEEEecCCccHHHHHHHHhcC
Q 037090          147 LNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      .++|+|||+|+|.+++..+++..
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aGA  106 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAGA  106 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC
T ss_pred             CCEEEEeCCCccHHHHHHHHhCC
Confidence            36899999999999987777644

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=91.64  E-value=0.18  Score=38.81  Aligned_cols=23  Identities=17%  Similarity=0.169  Sum_probs=19.6

Q ss_pred             CCCCeEEEecCCccHHHHHHHHh
Q 037090          145 ERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      ....+|+|||||+|.++..+++.
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~   85 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA   85 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC
Confidence            44579999999999999998776

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=91.50  E-value=0.16  Score=39.35  Aligned_cols=27  Identities=11%  Similarity=0.071  Sum_probs=23.8

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .....+|+|+|+|+|..+..+++..++
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~  107 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKN  107 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTT
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCC
Confidence            455679999999999999999998876

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=90.86  E-value=0.19  Score=41.71  Aligned_cols=33  Identities=21%  Similarity=0.232  Sum_probs=25.6

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ..+++..+ ..+..+|+|+|||+|.++..++++.
T Consensus       276 ~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~~  308 (433)
T 1uwv_A          276 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQA  308 (433)
T ss_dssp             HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTS
T ss_pred             HHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhhC
Confidence            34445555 5556799999999999999999873

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=90.01  E-value=0.24  Score=38.28  Aligned_cols=25  Identities=20%  Similarity=0.223  Sum_probs=21.2

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhc
Q 037090          144 FERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ..+..+|+|+|||.|.++..++++.
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~g  105 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASLG  105 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHTT
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHhC
Confidence            4445689999999999999999874

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=89.79  E-value=0.27  Score=44.65  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=21.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcC
Q 037090          146 RLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      +..+|+|||||+|.++..++++.|
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~  744 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPT  744 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCC
Confidence            457999999999999999999984

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=89.44  E-value=0.35  Score=38.07  Aligned_cols=38  Identities=13%  Similarity=0.024  Sum_probs=29.9

Q ss_pred             HHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          131 TIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ..-..++.+.+- +....+|||+|+|.|..+..++++.|
T Consensus        76 AfKL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~g  113 (282)
T 3gcz_A           76 SAKLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKN  113 (282)
T ss_dssp             HHHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTT
T ss_pred             HHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcC
Confidence            334456777765 77777999999999999999887665

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=89.40  E-value=0.049  Score=41.30  Aligned_cols=25  Identities=8%  Similarity=0.040  Sum_probs=21.4

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcC
Q 037090          145 ERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      .+..+|+|||||+|.++..++++.+
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~   79 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF   79 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc
Confidence            3456899999999999999888776

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=89.31  E-value=0.48  Score=39.46  Aligned_cols=50  Identities=14%  Similarity=0.012  Sum_probs=33.1

Q ss_pred             HHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          120 NLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       120 ~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ..|..+.-..+......+....+ .....+|+|+|+|.|..+..+++..|+
T Consensus       234 ~~~~~G~~~~qd~~s~l~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~  283 (450)
T 2yxl_A          234 SAFNEGKIIVQEEASAVASIVLD-PKPGETVVDLAAAPGGKTTHLAELMKN  283 (450)
T ss_dssp             HHHHTTSEEECCHHHHHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTT
T ss_pred             chhhCceEEecCchhHHHHHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCC
Confidence            34555443333332222334444 555679999999999999999999876

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=89.17  E-value=0.19  Score=41.18  Aligned_cols=24  Identities=25%  Similarity=0.202  Sum_probs=20.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcC
Q 037090          146 RLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ...+|+|||||+|.++..++++..
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~  256 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGA  256 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCC
Confidence            346899999999999999999843

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=89.07  E-value=0.31  Score=40.35  Aligned_cols=34  Identities=9%  Similarity=0.088  Sum_probs=26.9

Q ss_pred             HHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          138 LETYKGFERLNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       138 ~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      ....+ .....+|+|+|+|.|..+..+++..|+.+
T Consensus       239 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~  272 (429)
T 1sqg_A          239 MTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQ  272 (429)
T ss_dssp             HHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCE
T ss_pred             HHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCE
Confidence            33444 45567999999999999999999998733

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=88.81  E-value=0.2  Score=39.56  Aligned_cols=22  Identities=9%  Similarity=0.078  Sum_probs=17.6

Q ss_pred             CCeEEEecCCccHHHHHHHHhc
Q 037090          147 LNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ..+|+|||||+|..+..++++.
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~~   70 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYGE   70 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHTT
T ss_pred             CCeEEEEecCCcHhHHHHHhcC
Confidence            5789999999998777666543

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=88.73  E-value=0.41  Score=37.57  Aligned_cols=36  Identities=11%  Similarity=0.008  Sum_probs=27.3

Q ss_pred             hHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          133 VMKEILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       133 ~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ...++.+..- +....+|||+|+|.|..+..++++.|
T Consensus        62 KL~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~   97 (277)
T 3evf_A           62 KLRWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKE   97 (277)
T ss_dssp             HHHHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTT
T ss_pred             HHHHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcC
Confidence            3445555543 66667999999999999998887755

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=88.68  E-value=0.27  Score=39.40  Aligned_cols=23  Identities=4%  Similarity=-0.090  Sum_probs=20.4

Q ss_pred             CCeEEEecCCccHHHHHHHHhcC
Q 037090          147 LNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ..+|+|+|||+|.++..++++.+
T Consensus       154 ~~~VLDlgcGtG~~sl~la~~ga  176 (332)
T 2igt_A          154 PLKVLNLFGYTGVASLVAAAAGA  176 (332)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTC
T ss_pred             CCcEEEcccccCHHHHHHHHcCC
Confidence            46899999999999999998755

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=88.12  E-value=0.58  Score=38.42  Aligned_cols=37  Identities=11%  Similarity=-0.058  Sum_probs=29.4

Q ss_pred             hHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          133 VMKEILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       133 ~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .+..++.... |.+...|+|.+||+|.++++.+....+
T Consensus       189 lAa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~  225 (393)
T 3k0b_A          189 MAAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQN  225 (393)
T ss_dssp             HHHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTT
T ss_pred             HHHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcC
Confidence            3455666666 877789999999999999998876654

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=87.84  E-value=0.58  Score=38.26  Aligned_cols=36  Identities=11%  Similarity=-0.079  Sum_probs=28.4

Q ss_pred             hHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          133 VMKEILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       133 ~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      .+..++.... |.+...|+|++||+|.++++.+....
T Consensus       183 lAa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~  218 (385)
T 3ldu_A          183 LAAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGI  218 (385)
T ss_dssp             HHHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHT
T ss_pred             HHHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHh
Confidence            3455666666 87778999999999999999887743

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=87.78  E-value=0.1  Score=40.94  Aligned_cols=54  Identities=19%  Similarity=0.153  Sum_probs=35.6

Q ss_pred             HHHHHHhhh--HHhHHHHHHhcC----CCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          122 FNQSMHNHT--TIVMKEILETYK----GFERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       122 F~~~M~~~~--~~~~~~~~~~~~----~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      -.+.|..+.  +...+.+-+.|+    ......+|+|||||.|-++..+...+|..+.+-
T Consensus       102 ~~~~l~~H~STreRLp~lD~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a  161 (281)
T 3lcv_B          102 LLRAMSVHISTRERLPHLDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIA  161 (281)
T ss_dssp             HHHHHTTSHHHHHHGGGHHHHHHHHGGGSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEE
T ss_pred             HHHHHhcCCCHHHHhHhHHHHHHHHHhccCCCceeeeeccCccHHHHHHHhhCCCCEEEE
Confidence            345666543  222333333344    123467999999999999999999999877553

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=87.62  E-value=0.18  Score=38.97  Aligned_cols=24  Identities=13%  Similarity=0.164  Sum_probs=16.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCC
Q 037090          146 RLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      +..+|+|||||+|.. ..++.+.+.
T Consensus        71 ~~~~vLDiGcG~G~~-~~l~~~~~~   94 (289)
T 2g72_A           71 SGRTLIDIGSGPTVY-QLLSACSHF   94 (289)
T ss_dssp             CCSEEEEETCTTCCG-GGTTGGGGC
T ss_pred             CCCeEEEECCCcChH-HHHhhccCC
Confidence            456899999999994 344444333

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=87.43  E-value=0.77  Score=33.36  Aligned_cols=26  Identities=19%  Similarity=0.114  Sum_probs=19.9

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHH
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNIL  164 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i  164 (178)
                      +++.+. - ...+|+|||||+|.++..+
T Consensus        29 ~l~~~~-~-~~~~vLdiG~G~G~~~~~l   54 (211)
T 2gs9_A           29 ALKGLL-P-PGESLLEVGAGTGYWLRRL   54 (211)
T ss_dssp             HHHTTC-C-CCSEEEEETCTTCHHHHHC
T ss_pred             HHHHhc-C-CCCeEEEECCCCCHhHHhC
Confidence            444443 2 5579999999999998877

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=87.07  E-value=0.75  Score=35.59  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=25.5

Q ss_pred             HHHHHhcCCCCCC--CeEEEecCCccHHHHHHHHhc
Q 037090          135 KEILETYKGFERL--NQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       135 ~~~~~~~~~~~~~--~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      +.+.+... ..+.  .+|+|+|||.|..+..++++.
T Consensus        76 e~l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~g  110 (258)
T 2oyr_A           76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASVG  110 (258)
T ss_dssp             SHHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHHT
T ss_pred             HHHHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHcC
Confidence            34555554 4444  789999999999999999984

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=87.01  E-value=0.75  Score=37.17  Aligned_cols=33  Identities=15%  Similarity=0.119  Sum_probs=23.8

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .+++..+ ..+ .+|+|+|||+|.++..+++....
T Consensus       205 ~~~~~~~-~~~-~~vLDl~cG~G~~~l~la~~~~~  237 (369)
T 3bt7_A          205 WALDVTK-GSK-GDLLELYCGNGNFSLALARNFDR  237 (369)
T ss_dssp             HHHHHTT-TCC-SEEEEESCTTSHHHHHHGGGSSE
T ss_pred             HHHHHhh-cCC-CEEEEccCCCCHHHHHHHhcCCE
Confidence            3444444 333 67999999999999999886543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=86.77  E-value=0.75  Score=36.08  Aligned_cols=30  Identities=17%  Similarity=0.279  Sum_probs=20.9

Q ss_pred             CCCeEEEecCCc--cHHHHHH-HHhcCCCeEEE
Q 037090          146 RLNQFVDVADGL--GENKNIL-LTKISIISLNT  175 (178)
Q Consensus       146 ~~~~vVDVGGg~--G~~~~~i-~~~~P~l~~~v  175 (178)
                      +...|||||||.  +.+..++ .+.+|+.+.+-
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~  110 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVY  110 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEE
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEE
Confidence            567999999997  3344444 45679887554

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=86.34  E-value=0.83  Score=37.39  Aligned_cols=37  Identities=16%  Similarity=-0.051  Sum_probs=29.2

Q ss_pred             hHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          133 VMKEILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       133 ~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .+..++.... |.+...|+|.+||+|.++++.+....+
T Consensus       182 LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~  218 (384)
T 3ldg_A          182 MAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMN  218 (384)
T ss_dssp             HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTT
T ss_pred             HHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcC
Confidence            3455666666 877789999999999999998876554

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=86.32  E-value=0.5  Score=39.24  Aligned_cols=24  Identities=17%  Similarity=0.115  Sum_probs=20.7

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCC
Q 037090          147 LNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ..+|+|+|||+|.++..++++...
T Consensus       291 ~~~VLDlgcG~G~~sl~la~~~~~  314 (425)
T 2jjq_A          291 GEKILDMYSGVGTFGIYLAKRGFN  314 (425)
T ss_dssp             SSEEEEETCTTTHHHHHHHHTTCE
T ss_pred             CCEEEEeeccchHHHHHHHHcCCE
Confidence            468999999999999999987543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=85.96  E-value=1.1  Score=37.19  Aligned_cols=28  Identities=7%  Similarity=0.100  Sum_probs=21.1

Q ss_pred             CCeEEEecCC------ccHHHHHHHHhc-CCCeEE
Q 037090          147 LNQFVDVADG------LGENKNILLTKI-SIISLN  174 (178)
Q Consensus       147 ~~~vVDVGGg------~G~~~~~i~~~~-P~l~~~  174 (178)
                      ..+|+|||||      +|..+..+++++ |+.+.+
T Consensus       217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~  251 (419)
T 3sso_A          217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIY  251 (419)
T ss_dssp             CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEE
T ss_pred             CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEE
Confidence            4689999999      677777777664 876544

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=85.62  E-value=0.85  Score=37.23  Aligned_cols=26  Identities=8%  Similarity=-0.037  Sum_probs=23.4

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          147 LNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      ..+|+|+|+|+|..++.++++.|..+
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~   73 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEE   73 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSE
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCe
Confidence            46899999999999999999988766

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=85.36  E-value=0.44  Score=39.48  Aligned_cols=23  Identities=35%  Similarity=0.450  Sum_probs=20.2

Q ss_pred             CCeEEEecCCccHHHHHHHHhcC
Q 037090          147 LNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ..+|+|+|||.|..+..+++..-
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~  116 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKAS  116 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCS
T ss_pred             CCEEEEeCCCchHHHHHHHhcCC
Confidence            57999999999999999988753

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=85.29  E-value=0.75  Score=35.59  Aligned_cols=47  Identities=21%  Similarity=0.237  Sum_probs=29.1

Q ss_pred             HHHHhhhH--HhHHHHHHhcC---CCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          124 QSMHNHTT--IVMKEILETYK---GFERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       124 ~~M~~~~~--~~~~~~~~~~~---~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      +.|..+..  ...+.+-+.|+   +.....+|+|||||.|-++..+.   |..+.
T Consensus        78 ~~l~~H~STrerLp~ld~fY~~i~~~~~p~~VLDlGCG~gpLal~~~---~~~~y  129 (253)
T 3frh_A           78 KALSLHASTKERLAELDTLYDFIFSAETPRRVLDIACGLNPLALYER---GIASV  129 (253)
T ss_dssp             HHHTTSHHHHHHGGGHHHHHHHHTSSCCCSEEEEETCTTTHHHHHHT---TCSEE
T ss_pred             HHHhhCCCHHHHhhhHHHHHHHHhcCCCCCeEEEecCCccHHHHHhc---cCCeE
Confidence            56666432  22333333332   13446799999999999999877   55443

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=85.29  E-value=1.1  Score=36.68  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=22.7

Q ss_pred             HHhHHHHHHhcCCCC-----CCCeEEEecCCccHHHHHH
Q 037090          131 TIVMKEILETYKGFE-----RLNQFVDVADGLGENKNIL  164 (178)
Q Consensus       131 ~~~~~~~~~~~~~~~-----~~~~vVDVGGg~G~~~~~i  164 (178)
                      +..+...++..+ ..     +.-+|+|+|||+|..+..+
T Consensus        33 ~~~~~~ai~~l~-~~~~~~~~~~~IaDlGCssG~Nt~~~   70 (374)
T 3b5i_A           33 LHLLEETLENVH-LNSSASPPPFTAVDLGCSSGANTVHI   70 (374)
T ss_dssp             HHHHHHHHHTSC-CCCSSSCCCEEEEEETCCSSHHHHHH
T ss_pred             HHHHHHHHHHhh-ccccCCCCceEEEecCCCCChhHHHH
Confidence            444455555555 32     2468999999999988776

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=84.53  E-value=0.42  Score=38.16  Aligned_cols=25  Identities=12%  Similarity=0.222  Sum_probs=22.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCC
Q 037090          146 RLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ...+|+|+|||+|.++..++++.|.
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~  154 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLEL  154 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHT
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHH
Confidence            4468999999999999999998875

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=84.01  E-value=0.93  Score=35.33  Aligned_cols=24  Identities=17%  Similarity=0.117  Sum_probs=19.0

Q ss_pred             CCeEEEecCCccH----HHHHHHHhcCC
Q 037090          147 LNQFVDVADGLGE----NKNILLTKISI  170 (178)
Q Consensus       147 ~~~vVDVGGg~G~----~~~~i~~~~P~  170 (178)
                      ..+|+|+|||+|.    +++.+++..|.
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~  133 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGM  133 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCS
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhccc
Confidence            3589999999999    56667777663

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=83.08  E-value=0.84  Score=37.48  Aligned_cols=24  Identities=17%  Similarity=-0.032  Sum_probs=21.1

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCC
Q 037090          147 LNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .++|+|+|+|+|.++..+++..+.
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~ga~  238 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARKGAY  238 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHTTCE
T ss_pred             CCeEEEcccchhHHHHHHHHcCCe
Confidence            679999999999999999987543

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=82.98  E-value=1.4  Score=36.56  Aligned_cols=34  Identities=12%  Similarity=0.071  Sum_probs=25.4

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ...+++..+ .....+|+|.|||+|.++..+++..
T Consensus       160 ~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l  193 (445)
T 2okc_A          160 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYM  193 (445)
T ss_dssp             HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHH
Confidence            345555554 4445689999999999999988763

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=82.00  E-value=0.23  Score=38.08  Aligned_cols=23  Identities=9%  Similarity=0.135  Sum_probs=16.8

Q ss_pred             CCCCeEEEecCCccHHHHHHHHh
Q 037090          145 ERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      .+..+|+|||||+|.++...++.
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~   76 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACD   76 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGG
T ss_pred             CCCceEEEeCCCccHHHHHHHHh
Confidence            34568999999999876654433

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=81.70  E-value=2  Score=35.35  Aligned_cols=30  Identities=17%  Similarity=0.179  Sum_probs=23.7

Q ss_pred             CCCCeEEEecCCccHHHHHHH-HhcCC-CeEE
Q 037090          145 ERLNQFVDVADGLGENKNILL-TKISI-ISLN  174 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~-~~~P~-l~~~  174 (178)
                      .+..+|+|||++.|.++..++ +..|. .+..
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~  256 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVW  256 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEE
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEE
Confidence            456799999999999999988 56665 4443

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=81.00  E-value=0.91  Score=36.99  Aligned_cols=24  Identities=0%  Similarity=-0.267  Sum_probs=20.6

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhc
Q 037090          145 ERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      .+.++|+|+|||+|.++..++++.
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g  234 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG  234 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC
Confidence            345799999999999999999864

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=80.51  E-value=2.7  Score=34.04  Aligned_cols=23  Identities=22%  Similarity=0.340  Sum_probs=20.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHhc
Q 037090          146 RLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      +...||+||-|.|.+...|+++.
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~   80 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKY   80 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHhhC
Confidence            34789999999999999999875

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=80.20  E-value=0.98  Score=38.00  Aligned_cols=31  Identities=13%  Similarity=0.110  Sum_probs=25.4

Q ss_pred             HhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          139 ETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       139 ~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ...+ .....+|+|+|+|.|..+..++++.+.
T Consensus        95 ~~L~-~~~g~~VLDlgaGpG~kt~~LA~~~~~  125 (464)
T 3m6w_A           95 VLLD-PKPGERVLDLAAAPGGKTTHLAARMGG  125 (464)
T ss_dssp             HHHC-CCTTCEEEESSCTTCHHHHHHHHHTTT
T ss_pred             HhcC-cCCCCEEEEEcCCcCHHHHHHHHhCCC
Confidence            3344 455679999999999999999999875

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=80.16  E-value=1  Score=36.70  Aligned_cols=23  Identities=9%  Similarity=-0.119  Sum_probs=20.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHhc
Q 037090          146 RLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      +.++|+|+|||+|.++..++++.
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g  242 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGG  242 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTT
T ss_pred             CCCeEEEeeccCCHHHHHHHHCC
Confidence            44689999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	178
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	5e-21
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	4e-19
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	8e-18
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	2e-11
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	7e-10
d1kyza1	107	a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic	8e-08
d1fp1d1	110	a.4.5.29 (D:19-128) Chalcone O-methyltransferase {	6e-07
d1fp1d1	110	a.4.5.29 (D:19-128) Chalcone O-methyltransferase {	6e-04

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 84.5 bits (208), Expect = 5e-21
 Identities = 47/94 (50%), Positives = 62/94 (65%), Gaps = 1/94 (1%)

Query: 66  GVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQS 125
           GVS++   L+ QDKV M+SW  +KDA+L+G +PF KA+ GM  F     D + N +FN+ 
Sbjct: 2   GVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNKG 60

Query: 126 MHNHTTIVMKEILETYKGFERLNQFVDVADGLGE 159
           M +H+TI MK+ILETY GFE L   VDV  G G 
Sbjct: 61  MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGA 94

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 79.4 bits (195), Expect = 4e-19
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 67  VSLAPTLLIIQDKVNMDSWSCVKDALLEG-LVPFMKAHNGMDGFAVAAKDEKINNLFNQS 125
           + LAP +  + D     S+  +K  + E  L  F     G   +    K+ + N  FN +
Sbjct: 1   LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTL-GSGFWDFLDKNPEYNTSFNDA 59

Query: 126 MHNHTTIVMKEILETYKGFERLNQFVDVADGLG 158
           M + + ++   + +    F+ L   VDV  G G
Sbjct: 60  MASDSKLINLALRDCDFVFDGLESIVDVGGGTG 92

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 75.9 bits (186), Expect = 8e-18
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 68  SLAPTLLIIQDKVNMDSWSCVKDALLEG-LVPFMKAHNGMDGFAVAAKDEKINNLFNQSM 126
            LA     +     +  W   K+A+++  +  F   H G+  +    KD+K+N +FN+SM
Sbjct: 3   YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVH-GVTKYEFMGKDKKMNQIFNKSM 61

Query: 127 HNHTTIVMKEILETYKGFERLNQFVDVADGLG 158
            +     MK +LE Y GFE ++  VDV  G G
Sbjct: 62  VDVCATEMKRMLEIYTGFEGISTLVDVGGGSG 93

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 58.8 bits (141), Expect = 2e-11
 Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 68  SLAPTLLIIQDKVNMD-SWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSM 126
                L +     + D +++ + D +  G   +   + G   +   + D  + + F+  M
Sbjct: 4   QQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRY-GRPFWEDLSADVALADSFDALM 62

Query: 127 HNHTTIVMKEILETYKGFERLNQFVDVADGLG 158
                +  +   + Y  +  +   +DV  G G
Sbjct: 63  SCDEDLAYEAPADAYD-WSAVRHVLDVGGGNG 93

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 54.3 bits (129), Expect = 7e-10
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 84  SWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKG 143
           S++ + DA+  G   +   + G   +   A    +   F+  +     +        Y  
Sbjct: 20  SFTRLPDAIRTGRPTYESIY-GKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD- 77

Query: 144 FERLNQFVDVADGLG 158
           +  +   +DV  G G
Sbjct: 78  WTNVRHVLDVGGGKG 92

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 46.4 bits (110), Expect = 8e-08
 Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 56/104 (53%)

Query: 17  DEQDFLLAMELASGTILPMTIKSAIELD-------------------------------R 45
           DE+  L AM+LAS ++LPM +KSA+ELD                                
Sbjct: 4   DEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPV 63

Query: 46  SVQRL-------------------------YGLAPVSKYFVPNE 64
            + R+                         YGLA V+KY V NE
Sbjct: 64  MLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 107

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 44.0 bits (104), Expect = 6e-07
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 17 DEQDFLLAMELASGTILPMTIKSAIELD 44
          ++   L AM L +  + P  + +AI+L+
Sbjct: 3  EDSACLSAMVLTTNLVYPAVLNAAIDLN 30

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 35.6 bits (82), Expect = 6e-04
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 44  DRSVQRLYGLAPVSKYFVPNE 64
           D   +R+YGL+ V KY VP+E
Sbjct: 89  DGGAERVYGLSMVGKYLVPDE 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	178
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.92
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.91
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.88
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.84
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.8
d1fp2a1	101	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.68
d1kyza1	107	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.66
d1fp1d1	110	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.5
d1tw3a1	85	Carminomycin 4-O-methyltransferase {Streptomyces p	97.4
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	97.36
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	97.04
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	96.85
d1qzza1	92	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	96.82
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	96.78
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	96.77
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	96.74
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	96.73
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	96.62
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	96.55
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	96.53
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	96.45
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	96.43
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	96.41
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	96.35
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	96.32
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	96.12
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	96.1
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	96.06
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	96.05
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	95.81
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	95.8
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	95.73
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	95.69
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	95.67
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	95.55
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	95.46
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	95.46
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	95.43
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	94.65
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	94.53
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	94.43
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	94.43
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	94.23
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	94.07
d2h00a1	250	Methyltransferase 10 domain containing protein MET	93.88
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	93.83
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	93.82
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	93.72
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	93.7
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	93.49
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	93.32
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	92.28
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	91.5
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	91.36
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	91.35
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	90.45
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	89.92
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	89.21
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	89.07
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	88.67
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	88.22
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	86.8
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	85.39
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	84.82
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	84.41
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	81.92
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	80.61

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.92  E-value=4.9e-25  Score=171.13  Aligned_cols=109  Identities=45%  Similarity=0.704  Sum_probs=102.6

Q ss_pred             CChHHHHHHhcChhhhhhhhhHHHHHhcCCcchhhhccCCchhhhhccChHHHHHHHHHHHhhhHHhHHHHHHhcCCCCC
Q 037090           67 VSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFER  146 (178)
Q Consensus        67 ~~~~~~v~~~~~~~~~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~  146 (178)
                      .|+++++++..++.++++|.+|+++||+|+++|+.+| |.++|+|+.++|+..+.|+++|...+....+.+++.|+.+++
T Consensus         3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~~~f~~~~-G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~   81 (243)
T d1kyza2           3 VSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEG   81 (243)
T ss_dssp             CCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHH-SSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSS
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHHHHhhCCCHHHhhc-CCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccC
Confidence            3899999998888899999999999999999999999 999999999999999999999999998888999999983466


Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      .++|||||||+|+++++|+++||+++++++
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~  111 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINF  111 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEE
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEc
Confidence            899999999999999999999999999986

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.91  E-value=9.8e-25  Score=169.55  Aligned_cols=108  Identities=30%  Similarity=0.502  Sum_probs=90.3

Q ss_pred             ChHHHHHHhcChhhhhhhhhHHHHHhcCC-cchhhhccCCchhhhhccChHHHHHHHHHHHhhhHHhHHHHHHhcCCCCC
Q 037090           68 SLAPTLLIIQDKVNMDSWSCVKDALLEGL-VPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFER  146 (178)
Q Consensus        68 ~~~~~v~~~~~~~~~~~~~~L~~~l~~g~-~~f~~a~~g~~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~  146 (178)
                      ++++++.++.+|.++++|.+|++++++|. ++|+.+| |.++|||+.+||+..+.|+++|.+.+....+.+++.||.|++
T Consensus         3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~-G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~   81 (244)
T d1fp1d2           3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVH-GVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEG   81 (244)
T ss_dssp             CCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTT
T ss_pred             cHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhc-CCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            78999999999999999999999999865 7899999 999999999999999999999999999999999999987799


Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      ..+|||||||+|+++++|+++||+++++|+
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~  111 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKYPLIKGINF  111 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEe
Confidence            999999999999999999999999999886

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.88  E-value=6.9e-23  Score=159.03  Aligned_cols=107  Identities=21%  Similarity=0.331  Sum_probs=97.6

Q ss_pred             ChHHHHHHhcChhhhhhhhhHHHHHhcC-CcchhhhccCCchhhhhccChHHHHHHHHHHHhhhHHhHHHHHHh-cCCCC
Q 037090           68 SLAPTLLIIQDKVNMDSWSCVKDALLEG-LVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILET-YKGFE  145 (178)
Q Consensus        68 ~~~~~v~~~~~~~~~~~~~~L~~~l~~g-~~~f~~a~~g~~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~-~~~~~  145 (178)
                      |++++++++.+|.++.+|..|++++++| .++|+.+| |.++|||+.+||+..+.|+++|...+......+.+. ++ |+
T Consensus         2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~-G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~-~~   79 (244)
T d1fp2a2           2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTL-GSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFV-FD   79 (244)
T ss_dssp             CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHH-SSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHH-HT
T ss_pred             ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhh-CCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhccc-cc
Confidence            6889999999999999999999999987 47999999 999999999999999999999999988776666543 45 88


Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      +.++|||||||+|+++++++++||+++++|+
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~  110 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVF  110 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEe
Confidence            9999999999999999999999999999886

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.84  E-value=2.2e-21  Score=151.31  Aligned_cols=107  Identities=11%  Similarity=0.139  Sum_probs=97.7

Q ss_pred             ChHHHHHHhcChhh-hhhhhhHHHHHhcCCcchhhhccCCchhhhhccChHHHHHHHHHHHhhhHHhHHHHHHhcCCCCC
Q 037090           68 SLAPTLLIIQDKVN-MDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFER  146 (178)
Q Consensus        68 ~~~~~v~~~~~~~~-~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~  146 (178)
                      ++++|+++...... ..+|.+|.+++|+|.++|+.++ |.++|||+.++|+..+.|+++|...+...++.+++.|| |++
T Consensus         4 ~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~~~~~~~~-G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~   81 (256)
T d1qzza2           4 QQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRY-GRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSA   81 (256)
T ss_dssp             CHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHH-SSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTT
T ss_pred             HHHHHHhhcCchhhhHhhHHHHHHHHHhCCchhhhhh-CCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-Ccc
Confidence            78899877533323 3479999999999999999999 99999999999999999999999999888899999999 999


Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      .++|||||||+|.++.+++++||+++++++
T Consensus        82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~  111 (256)
T d1qzza2          82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLV  111 (256)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhhcCcEEEEe
Confidence            999999999999999999999999999876

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.80  E-value=1.2e-19  Score=140.96  Aligned_cols=107  Identities=13%  Similarity=0.163  Sum_probs=94.3

Q ss_pred             ChHHHHHHhc-ChhhhhhhhhHHHHHhcCCcchhhhccCCchhhhhccChHHHHHHHHHHHhhhHHhHHHHHHhcCCCCC
Q 037090           68 SLAPTLLIIQ-DKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFER  146 (178)
Q Consensus        68 ~~~~~v~~~~-~~~~~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~  146 (178)
                      .++.|..+.. -.....+|.+|+++||+|+++|+.++ |+++|+|+.++|+..+.|+.+|...+....+.+++.|| |++
T Consensus         3 ~~r~~~~~~~~~~~~~~~~~~L~~~vr~G~~~~~~~~-G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~   80 (253)
T d1tw3a2           3 AQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIY-GKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTN   80 (253)
T ss_dssp             CHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHH-SSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTT
T ss_pred             chhhhhCHHHHHhhccccHHHHHHHHHhCCchhhhcc-CCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-Ccc
Confidence            4566654321 01234689999999999999999999 99999999999999999999999998888899999999 999


Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      .++|||||||+|.++..+++++|+++++++
T Consensus        81 ~~~VLDvGcG~G~~~~~la~~~p~~~~~~~  110 (253)
T d1tw3a2          81 VRHVLDVGGGKGGFAAAIARRAPHVSATVL  110 (253)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcceeEEEEc
Confidence            999999999999999999999999999875

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.68  E-value=6.1e-09  Score=68.99  Aligned_cols=52  Identities=25%  Similarity=0.291  Sum_probs=46.2

Q ss_pred             CCccccHHHHHHHHHHHhhHHHHHHHHHHHhC--------------------------------C---------------
Q 037090           13 KPARDEQDFLLAMELASGTILPMTIKSAIELD--------------------------------R---------------   45 (178)
Q Consensus        13 ~~~~~~~~~~~l~~~~~g~~~s~~L~~a~elg--------------------------------R---------------   45 (178)
                      +++|..+++..||++++||+.+++|++|+|||                                |               
T Consensus         2 ~~~e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L~~~gi~~~~~   81 (101)
T d1fp2a1           2 KPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIIT   81 (101)
T ss_dssp             CSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred             ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcCCCCCHHHHHHHcCCCCccchHHHHHHHHHHhCCceeeec
Confidence            46788899999999999999999999999999                                1               


Q ss_pred             CCCCceecchhccccCCCC
Q 037090           46 SVQRLYGLAPVSKYFVPNE   64 (178)
Q Consensus        46 ~~~~~y~~t~~s~~L~~~~   64 (178)
                      +++++|+|||+|++|++++
T Consensus        82 ~~~~~Y~lt~~s~~Lv~~~  100 (101)
T d1fp2a1          82 KEEESYALTVASELLVRGS  100 (101)
T ss_dssp             SSSEEEEECHHHHTTSTTS
T ss_pred             CCCCeEecCHHHHHhhcCC
Confidence            2557899999999999875

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.66  E-value=7.5e-06  Score=54.10  Aligned_cols=27  Identities=59%  Similarity=0.876  Sum_probs=23.7

Q ss_pred             cHHHHHHHHHHHhhHHHHHHHHHHHhC
Q 037090           18 EQDFLLAMELASGTILPMTIKSAIELD   44 (178)
Q Consensus        18 ~~~~~~l~~~~~g~~~s~~L~~a~elg   44 (178)
                      .+.....++++.+++.+++|++|+|||
T Consensus         5 ee~~l~a~~L~~~~v~pmaLk~AieLg   31 (107)
T d1kyza1           5 EEANLFAMQLASASVLPMILKSALELD   31 (107)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence            445566789999999999999999999

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.50  E-value=3.1e-05  Score=51.26  Aligned_cols=28  Identities=29%  Similarity=0.553  Sum_probs=25.0

Q ss_pred             ccHHHHHHHHHHHhhHHHHHHHHHHHhC
Q 037090           17 DEQDFLLAMELASGTILPMTIKSAIELD   44 (178)
Q Consensus        17 ~~~~~~~l~~~~~g~~~s~~L~~a~elg   44 (178)
                      ..+.....++++.++..+++|++|+|||
T Consensus         3 ~~~~~l~a~~L~~~~v~pMaLk~AieLg   30 (110)
T d1fp1d1           3 EDSACLSAMVLTTNLVYPAVLNAAIDLN   30 (110)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence            3456778999999999999999999999

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=97.40  E-value=6.3e-05  Score=47.44  Aligned_cols=40  Identities=15%  Similarity=0.227  Sum_probs=33.6

Q ss_pred             HHHHHhhHHHHHHHHHHHhC---------------------------C-------------CCCCceecchhccccCCCC
Q 037090           25 MELASGTILPMTIKSAIELD---------------------------R-------------SVQRLYGLAPVSKYFVPNE   64 (178)
Q Consensus        25 ~~~~~g~~~s~~L~~a~elg---------------------------R-------------~~~~~y~~t~~s~~L~~~~   64 (178)
                      +....+++.+++|++|+|||                           |             ++++.|++|+.|+.|++|+
T Consensus         6 l~~l~~~~~~~aL~~av~L~ifd~l~~gp~s~~eLA~~~g~~~~~l~rlLr~l~a~gl~~e~~~~~y~lt~~s~~L~~Dh   85 (85)
T d1tw3a1           6 LIRLGSLHTPMVVRTAATLRLVDHILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGELLADDH   85 (85)
T ss_dssp             HHHHHCSHHHHHHHHHHHTTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEECTTGGGGSTTS
T ss_pred             HHHHHchHHHHHHHHHHHcCcHHHhccCCCCHHHHHHHhCcChhHHHHHHHHHHHCCCeEecCCCeEecCHHHHHhhcCC
Confidence            33446899999999999999                           1             3678999999999999875

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=97.36  E-value=0.00016  Score=54.83  Aligned_cols=48  Identities=17%  Similarity=0.223  Sum_probs=36.2

Q ss_pred             HHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          121 LFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       121 ~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      .+..++.......+..+....+ +++..+|||||||+|.++..++++++
T Consensus        43 ~~~~a~~~~~~~~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~~   90 (282)
T d2o57a1          43 EIREASLRTDEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKFG   90 (282)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccCC
Confidence            3444444444555566677777 88889999999999999999998874

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.04  E-value=0.00029  Score=50.57  Aligned_cols=38  Identities=13%  Similarity=0.239  Sum_probs=31.2

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      -+++..+ ..+.++|+|||||+|.++..++++.|++.++
T Consensus        43 lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~v~~i   80 (194)
T d1dusa_          43 ILVENVV-VDKDDDILDLGCGYGVIGIALADEVKSTTMA   80 (194)
T ss_dssp             HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSEEEEE
T ss_pred             HHHHhCC-cCCCCeEEEEeecCChhHHHHHhhcccccee
Confidence            3566666 6667899999999999999999999976553

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.001  Score=49.09  Aligned_cols=35  Identities=11%  Similarity=0.147  Sum_probs=29.8

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      ...+.+... +....+|||||||+|..+..++++++
T Consensus        22 ~~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~   56 (245)
T d1nkva_          22 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG   56 (245)
T ss_dssp             HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC
T ss_pred             HHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC
Confidence            455677777 87788999999999999999998886

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=96.82  E-value=0.00042  Score=44.17  Aligned_cols=26  Identities=23%  Similarity=0.377  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhC
Q 037090           19 QDFLLAMELASGTILPMTIKSAIELD   44 (178)
Q Consensus        19 ~~~~~l~~~~~g~~~s~~L~~a~elg   44 (178)
                      +....+++++.+++.+++|++|+|||
T Consensus         6 ~~~d~ll~~~~~~~~~~~L~~aveL~   31 (92)
T d1qzza1           6 QDLDVLLKNLGNLVTPMALRVAATLR   31 (92)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHchHHHHHHHHHHHcC
Confidence            56778999999999999999999999

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.78  E-value=0.00062  Score=49.54  Aligned_cols=28  Identities=14%  Similarity=0.084  Sum_probs=25.2

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ...|||||||.|..+..+++++|+...+
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~i   57 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYI   57 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEE
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEE
Confidence            3589999999999999999999998754

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.77  E-value=0.00065  Score=49.46  Aligned_cols=28  Identities=18%  Similarity=0.078  Sum_probs=25.2

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ...+||||||.|.++..+++++|+...+
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~i   59 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYI   59 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceE
Confidence            4689999999999999999999998643

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.74  E-value=0.0008  Score=49.49  Aligned_cols=38  Identities=18%  Similarity=0.126  Sum_probs=30.2

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      ..+++.+. ..+.++|+|||||+|..+..++++..++.|
T Consensus        31 ~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~~~v~g   68 (251)
T d1wzna1          31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAERGYEVVG   68 (251)
T ss_dssp             HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTTCEEEE
T ss_pred             HHHHHHhc-CCCCCEEEEeCCCCCccchhhcccceEEEE
Confidence            44555666 667789999999999999999998766544

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=96.73  E-value=0.0032  Score=45.68  Aligned_cols=30  Identities=10%  Similarity=0.019  Sum_probs=24.7

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhc--CCCeEE
Q 037090          145 ERLNQFVDVADGLGENKNILLTKI--SIISLN  174 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~--P~l~~~  174 (178)
                      ....+|+|||||+|..+..+++..  |+.+.+
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~   69 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKII   69 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceE
Confidence            445789999999999999999874  666654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.62  E-value=0.00072  Score=48.09  Aligned_cols=37  Identities=19%  Similarity=0.085  Sum_probs=29.4

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      .++.... ..+..+|+|||||+|.++++++++++++-+
T Consensus        24 ~il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~~~V~a   60 (186)
T d1l3ia_          24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRVRRVYA   60 (186)
T ss_dssp             HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTSSEEEE
T ss_pred             HHHHhcC-CCCCCEEEEEECCeEcccccccccceEEEE
Confidence            3455555 677789999999999999999998875443

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.55  E-value=0.0011  Score=47.34  Aligned_cols=37  Identities=19%  Similarity=0.127  Sum_probs=27.7

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      +++... +-...+|+|||||+|..+..++++.+++.++
T Consensus        22 ~~~~~~-~~~~grvLDiGcG~G~~~~~la~~g~~v~gv   58 (198)
T d2i6ga1          22 VLAAAK-VVAPGRTLDLGCGNGRNSLYLAANGYDVTAW   58 (198)
T ss_dssp             HHHHHT-TSCSCEEEEETCTTSHHHHHHHHTTCEEEEE
T ss_pred             HHHHcc-cCCCCcEEEECCCCCHHHHHHHHHhhhhccc
Confidence            344333 4344689999999999999999998776543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.53  E-value=0.0025  Score=48.56  Aligned_cols=42  Identities=14%  Similarity=0.169  Sum_probs=34.4

Q ss_pred             hHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          133 VMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       133 ~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      ..+.+++... ..+..+|+|||||.|..+..++++++ ++.+-+
T Consensus        50 k~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~gi   91 (285)
T d1kpga_          50 KIDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGL   91 (285)
T ss_dssp             HHHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEE
T ss_pred             HHHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcCC-cceEEE
Confidence            3466777777 88889999999999999999999996 565543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.45  E-value=0.0035  Score=47.90  Aligned_cols=37  Identities=16%  Similarity=0.236  Sum_probs=32.4

Q ss_pred             hHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          133 VMKEILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       133 ~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ..+.+++... ..+..+|+|||||.|.++..++++++.
T Consensus        49 k~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g~   85 (291)
T d1kpia_          49 KRKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYDV   85 (291)
T ss_dssp             HHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHCC
T ss_pred             HHHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcCc
Confidence            3567778887 888899999999999999999999974

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.0024  Score=47.92  Aligned_cols=38  Identities=13%  Similarity=0.231  Sum_probs=29.6

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      ..+.+..+  .+..+|+|||||+|.++..+++++|+.+.+
T Consensus        75 ~~l~~~~~--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~  112 (268)
T d1p91a_          75 AQLRERLD--DKATAVLDIGCGEGYYTHAFADALPEITTF  112 (268)
T ss_dssp             HHHHHHSC--TTCCEEEEETCTTSTTHHHHHHTCTTSEEE
T ss_pred             HHHHHhcC--CCCCEEEEeCCCCcHHHHHHHHHCCCCEEE
Confidence            33444444  455789999999999999999999987754

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.41  E-value=0.0023  Score=51.29  Aligned_cols=39  Identities=10%  Similarity=0.260  Sum_probs=32.7

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      +..+++..+ .....+|||||||.|..+..+++++|..++
T Consensus       205 i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v  243 (406)
T d1u2za_         205 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALS  243 (406)
T ss_dssp             HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEE
T ss_pred             HHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCeE
Confidence            456777777 777889999999999999999999996443

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.35  E-value=0.0038  Score=47.32  Aligned_cols=39  Identities=10%  Similarity=0.220  Sum_probs=32.5

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      .+.+++... ..+..+|+|||||.|.++..++++++. +.+
T Consensus        41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~   79 (280)
T d2fk8a1          41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFDV-NVI   79 (280)
T ss_dssp             HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHCC-EEE
T ss_pred             HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCce-eEE
Confidence            466778877 888899999999999999999988864 543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.32  E-value=0.0021  Score=46.04  Aligned_cols=35  Identities=20%  Similarity=0.223  Sum_probs=25.4

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      +++.+  ..+..+|+|||||+|.++..+++....+.|
T Consensus        30 ~~~~~--l~~~~~ILDiGcG~G~~~~~la~~~~~v~g   64 (226)
T d1ve3a1          30 LLMKY--MKKRGKVLDLACGVGGFSFLLEDYGFEVVG   64 (226)
T ss_dssp             HHHHS--CCSCCEEEEETCTTSHHHHHHHHTTCEEEE
T ss_pred             HHHHh--cCCCCEEEEECCCcchhhhhHhhhhccccc
Confidence            44443  234468999999999999999987554443

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0047  Score=47.80  Aligned_cols=39  Identities=15%  Similarity=0.281  Sum_probs=33.2

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      ...+++... ..+..+|+|||||.|.++..+++++|..++
T Consensus       140 ~~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~  178 (328)
T d1nw3a_         140 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHH  178 (328)
T ss_dssp             HHHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEE
T ss_pred             HHHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeE
Confidence            456777777 777889999999999999999999997654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=96.10  E-value=0.0036  Score=46.63  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=29.9

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ..+++.++ ..+..+|+|||||+|.++..+++++++
T Consensus        83 ~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~  117 (254)
T d1xtpa_          83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA  117 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS
T ss_pred             HHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc
Confidence            45677777 677789999999999999999988876

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.06  E-value=0.0011  Score=48.92  Aligned_cols=27  Identities=22%  Similarity=0.306  Sum_probs=23.7

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          147 LNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      .++|+|||||+|.++..++++.+++.|
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~g~~v~G   64 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPKFKNTWA   64 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGSSEEEE
T ss_pred             CCeEEEEeCcCCHHHHHHHHhCCccEe
Confidence            368999999999999999999887654

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0072  Score=45.72  Aligned_cols=37  Identities=16%  Similarity=0.173  Sum_probs=29.3

Q ss_pred             HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          137 ILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      .+...+  .+..+|+|+|+|+|..++.+++++|+.+++-
T Consensus       101 ~l~~~~--~~~~~vlDlGtGSG~I~i~la~~~p~~~v~a  137 (274)
T d2b3ta1         101 ALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIA  137 (274)
T ss_dssp             HHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEE
T ss_pred             Hhhhhc--ccccceeeeehhhhHHHHHHHhhCCcceeee
Confidence            344443  3446799999999999999999999987664

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=95.81  E-value=0.0042  Score=46.53  Aligned_cols=48  Identities=15%  Similarity=0.119  Sum_probs=30.4

Q ss_pred             HHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          120 NLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       120 ~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ..|..+-...++.....+ +.+.  .+.++|+|||||+|.+++++++..+.
T Consensus        97 ~aFGTG~H~TT~l~l~~l-~~~~--~~g~~VLDiGcGsG~l~i~aa~~g~~  144 (254)
T d2nxca1          97 MAFGTGHHETTRLALKAL-ARHL--RPGDKVLDLGTGSGVLAIAAEKLGGK  144 (254)
T ss_dssp             -----CCSHHHHHHHHHH-HHHC--CTTCEEEEETCTTSHHHHHHHHTTCE
T ss_pred             cccCccccchhhHHHHHH-Hhhc--CccCEEEEcccchhHHHHHHHhcCCE
Confidence            357666655666655544 4444  34579999999999999988876543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0076  Score=44.99  Aligned_cols=27  Identities=19%  Similarity=0.347  Sum_probs=20.3

Q ss_pred             CeEEEecCCccHHHHHHH----HhcCCCeEE
Q 037090          148 NQFVDVADGLGENKNILL----TKISIISLN  174 (178)
Q Consensus       148 ~~vVDVGGg~G~~~~~i~----~~~P~l~~~  174 (178)
                      .+|+|||||+|.++..|+    .++|...+.
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~   72 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCIN   72 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEE
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceE
Confidence            379999999999877665    457776543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0038  Score=45.62  Aligned_cols=34  Identities=6%  Similarity=0.021  Sum_probs=24.7

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ..+.+...  ....+|+|||||.|..+..++++.|.
T Consensus        44 ~~la~~~~--~~g~~VLdIGcG~G~~a~~~a~~~~~   77 (229)
T d1zx0a1          44 HALAAAAS--SKGGRVLEVGFGMAIAASKVQEAPID   77 (229)
T ss_dssp             HHHHHHHT--TTCEEEEEECCTTSHHHHHHHTSCEE
T ss_pred             HHHHHhhc--cCCCeEEEeeccchHHHHHHHHcCCC
Confidence            33444443  23468999999999999999987663

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=95.69  E-value=0.0032  Score=45.67  Aligned_cols=29  Identities=17%  Similarity=0.193  Sum_probs=22.9

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISIISL  173 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~~  173 (178)
                      .+..+|+|||||+|.++..++++.-++.|
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~g   69 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQERGFEVVL   69 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTTCEEEE
T ss_pred             CCCCEEEEECCCCchhcccccccceEEEE
Confidence            34568999999999999999987544433

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.67  E-value=0.0049  Score=45.39  Aligned_cols=32  Identities=6%  Similarity=0.009  Sum_probs=27.4

Q ss_pred             hcCCCCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          140 TYKGFERLNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       140 ~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      .++ +.+..+|+|||||+|..+..+++..|+-+
T Consensus        69 ~l~-ikpG~~VLDlGcGsG~~~~~la~~~~~g~  100 (230)
T d1g8sa_          69 VMP-IKRDSKILYLGASAGTTPSHVADIADKGI  100 (230)
T ss_dssp             CCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSE
T ss_pred             hCC-CCCCCEEEEeCEEcCHHHHHHHHhCCCCE
Confidence            344 77788999999999999999999998743

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.55  E-value=0.015  Score=41.96  Aligned_cols=38  Identities=11%  Similarity=0.175  Sum_probs=30.7

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc-CCCeE
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKI-SIISL  173 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~~  173 (178)
                      ..+++..+ ..+..+|+|||||+|..+..+++.. |..+.
T Consensus        65 a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V  103 (213)
T d1dl5a1          65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLV  103 (213)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEE
T ss_pred             HHHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcE
Confidence            44667777 8888899999999999999999987 44443

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0046  Score=44.74  Aligned_cols=27  Identities=19%  Similarity=0.162  Sum_probs=23.0

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ..+..+|+|||||+|.++..++++++.
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~   84 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFR   84 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCS
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCC
Confidence            445678999999999999999888774

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.46  E-value=0.01  Score=42.85  Aligned_cols=31  Identities=10%  Similarity=0.022  Sum_probs=27.2

Q ss_pred             cCCCCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          141 YKGFERLNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       141 ~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      ++ +.+..+|+|||||+|..+..+++..|+-+
T Consensus        52 l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~   82 (209)
T d1nt2a_          52 LK-LRGDERVLYLGAASGTTVSHLADIVDEGI   82 (209)
T ss_dssp             CC-CCSSCEEEEETCTTSHHHHHHHHHTTTSE
T ss_pred             CC-CCCCCEEEEeCCcCCHHHHHHHHhccCCe
Confidence            44 77888999999999999999999999754

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=95.43  E-value=0.0036  Score=44.59  Aligned_cols=19  Identities=21%  Similarity=0.156  Sum_probs=16.2

Q ss_pred             CeEEEecCCccHHHHHHHH
Q 037090          148 NQFVDVADGLGENKNILLT  166 (178)
Q Consensus       148 ~~vVDVGGg~G~~~~~i~~  166 (178)
                      .+|||||||+|.++..+.+
T Consensus        38 ~~vLDiGcG~G~~~~~~~~   56 (208)
T d1vlma_          38 GRGVEIGVGTGRFAVPLKI   56 (208)
T ss_dssp             SCEEEETCTTSTTHHHHTC
T ss_pred             CeEEEECCCCcccccccce
Confidence            4799999999999887754

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.013  Score=44.64  Aligned_cols=27  Identities=15%  Similarity=-0.006  Sum_probs=22.7

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ..+.++|+|||||+|.++..++++.+.
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~   59 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGAK   59 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCS
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCCC
Confidence            334578999999999999999998764

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=94.53  E-value=0.03  Score=41.58  Aligned_cols=52  Identities=17%  Similarity=0.227  Sum_probs=29.5

Q ss_pred             HHHHHHHhhhHHh----HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh-cCCCeE
Q 037090          121 LFNQSMHNHTTIV----MKEILETYKGFERLNQFVDVADGLGENKNILLTK-ISIISL  173 (178)
Q Consensus       121 ~F~~~M~~~~~~~----~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~-~P~l~~  173 (178)
                      .|...|.-.++..    +..++...+ .....+|+|+|+|+|.++..+++. .|.-+.
T Consensus        57 ~~~~~~~r~~qiiypkD~~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V  113 (250)
T d1yb2a1          57 YFGRVIRRNTQIISEIDASYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTL  113 (250)
T ss_dssp             GHHHHC------------------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEE
T ss_pred             HHHhhCCCCCcccCHHHHHHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEE
Confidence            4555565555543    234455555 667789999999999999999987 466443

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=94.43  E-value=0.045  Score=40.89  Aligned_cols=58  Identities=16%  Similarity=0.038  Sum_probs=40.2

Q ss_pred             ChHHHHHHHHHHHhhhHH----hHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc-CCCeEE
Q 037090          115 DEKINNLFNQSMHNHTTI----VMKEILETYKGFERLNQFVDVADGLGENKNILLTKI-SIISLN  174 (178)
Q Consensus       115 ~p~~~~~F~~~M~~~~~~----~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~~~  174 (178)
                      .|... .|...|.-.++.    .+..++...+ ..+..+|+|+|+|+|.++..+++.. |.-+.+
T Consensus        70 ~p~~~-d~~~~~~r~~qiiypkd~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~  132 (266)
T d1o54a_          70 IPSLI-DEIMNMKRRTQIVYPKDSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVF  132 (266)
T ss_dssp             CCCHH-HHHHTCCC-CCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEE
T ss_pred             CCCHH-HHHhhccCCccccchHHHHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEE
Confidence            34433 344556544443    2456777777 8888999999999999999999875 665543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.43  E-value=0.016  Score=43.57  Aligned_cols=24  Identities=25%  Similarity=0.337  Sum_probs=21.0

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhc
Q 037090          145 ERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      .+.++|+|||||+|.++..++++.
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~g   78 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEEG   78 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHTT
T ss_pred             cCCCEEEEecCCCcHHHHHHHHcC
Confidence            445789999999999999999874

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.23  E-value=0.052  Score=40.55  Aligned_cols=52  Identities=13%  Similarity=0.047  Sum_probs=38.6

Q ss_pred             HHHHHHHhhhHH----hHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh-cCCCeE
Q 037090          121 LFNQSMHNHTTI----VMKEILETYKGFERLNQFVDVADGLGENKNILLTK-ISIISL  173 (178)
Q Consensus       121 ~F~~~M~~~~~~----~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~-~P~l~~  173 (178)
                      .|...|.-.++.    .+..++...+ .....+|+|+|+|+|.++..+++. .|+-+.
T Consensus        68 ~~~~~~~r~tqiiypkD~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V  124 (264)
T d1i9ga_          68 DYVMSMPRGPQVIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQV  124 (264)
T ss_dssp             HHHTTSCSCSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEE
T ss_pred             HHHhhccCCccccchHHHHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEE
Confidence            344556555443    2456677777 888899999999999999999998 576543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.07  E-value=0.017  Score=41.50  Aligned_cols=26  Identities=12%  Similarity=-0.112  Sum_probs=21.9

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      ++ .++|+|+|||+|.+++.++...+.
T Consensus        47 l~-Gk~VLDlGcGtG~l~i~a~~~ga~   72 (197)
T d1ne2a_          47 IG-GRSVIDAGTGNGILACGSYLLGAE   72 (197)
T ss_dssp             SB-TSEEEEETCTTCHHHHHHHHTTBS
T ss_pred             CC-CCEEEEeCCCCcHHHHHHHHcCCC
Confidence            55 479999999999999988887665

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.023  Score=42.10  Aligned_cols=31  Identities=13%  Similarity=0.080  Sum_probs=26.9

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      ++..+++|||.|+|..+..+++++|+.+.+-
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~   90 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGWYFLA   90 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCCEEEE
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCccccc
Confidence            3456899999999999999999999988653

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.03  Score=40.44  Aligned_cols=29  Identities=3%  Similarity=-0.225  Sum_probs=23.7

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      .....+|+|+|||.|..+..++++--++.
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~G~~V~   71 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADRGHSVV   71 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTTCEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhCCCcEE
Confidence            45567999999999999999998754443

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=93.82  E-value=0.033  Score=40.59  Aligned_cols=34  Identities=9%  Similarity=0.317  Sum_probs=28.0

Q ss_pred             HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090          136 EILETYKGFERLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .+++..+ ..+..+|+|||+|+|.++..+++...+
T Consensus        61 ~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~~~   94 (224)
T d1vbfa_          61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIVDK   94 (224)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSE
T ss_pred             HHHHHhh-hcccceEEEecCCCCHHHHHHHHHhcc
Confidence            4667777 888889999999999999888876544

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.72  E-value=0.022  Score=43.49  Aligned_cols=24  Identities=17%  Similarity=0.003  Sum_probs=20.8

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCC
Q 037090          147 LNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .++|+|||||+|.++..++++.+.
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~Ga~   57 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAGAR   57 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS
T ss_pred             cCEEEEEecCCcHHHHHHHHhCCC
Confidence            468999999999999999887654

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=93.70  E-value=0.011  Score=43.88  Aligned_cols=39  Identities=13%  Similarity=0.310  Sum_probs=32.3

Q ss_pred             hHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090          133 VMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIIS  172 (178)
Q Consensus       133 ~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~  172 (178)
                      .+..+++..+ ..+..+|++||.|.|.+...|+++.+++.
T Consensus        17 ii~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~~~v~   55 (245)
T d1yuba_          17 VLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISKQVT   55 (245)
T ss_dssp             THHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSSEEE
T ss_pred             HHHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhcCcee
Confidence            3466788877 78888999999999999999999866543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.49  E-value=0.025  Score=43.33  Aligned_cols=24  Identities=17%  Similarity=0.004  Sum_probs=20.4

Q ss_pred             CCeEEEecCCccHHHHHHHHhcCC
Q 037090          147 LNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       147 ~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .++|+|||||+|.++..++++...
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~Ga~   62 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKHGAK   62 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCS
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCCC
Confidence            468999999999999988887653

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.32  E-value=0.03  Score=39.99  Aligned_cols=25  Identities=20%  Similarity=0.096  Sum_probs=21.0

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          144 FERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      +++ ++|+|+|+|+|.++++++.+.+
T Consensus        45 l~g-~~vLDlg~GtG~l~i~a~~~g~   69 (201)
T d1wy7a1          45 IEG-KVVADLGAGTGVLSYGALLLGA   69 (201)
T ss_dssp             STT-CEEEEETCTTCHHHHHHHHTTC
T ss_pred             CCC-CEEEECcCcchHHHHHHHHcCC
Confidence            554 6899999999999999887755

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.28  E-value=0.14  Score=39.28  Aligned_cols=50  Identities=18%  Similarity=0.160  Sum_probs=37.7

Q ss_pred             HHHHHHHhhhHH----hHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc-CCC
Q 037090          121 LFNQSMHNHTTI----VMKEILETYKGFERLNQFVDVADGLGENKNILLTKI-SII  171 (178)
Q Consensus       121 ~F~~~M~~~~~~----~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~-P~l  171 (178)
                      .|...|.-.++.    .+..++...+ .....+|+|+|+|+|.++..+++.- |+-
T Consensus        70 d~~~~~~r~tqiiypkD~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G  124 (324)
T d2b25a1          70 DYVVLMKRGTAITFPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQG  124 (324)
T ss_dssp             HHHHHSCCSSCCCCHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTC
T ss_pred             HHhhccCCCCcccccccHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCc
Confidence            455666655543    2456777777 8888999999999999999999874 653

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.50  E-value=0.26  Score=35.46  Aligned_cols=38  Identities=16%  Similarity=0.071  Sum_probs=27.4

Q ss_pred             HHHHHhcC-CCCCCCeEEEecCCccHHHHHHHHhc-CCCe
Q 037090          135 KEILETYK-GFERLNQFVDVADGLGENKNILLTKI-SIIS  172 (178)
Q Consensus       135 ~~~~~~~~-~~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~  172 (178)
                      ..+++... ...+..+|+|||+|+|..+..+++.. |.-+
T Consensus        64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~  103 (224)
T d1i1na_          64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGK  103 (224)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCE
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCce
Confidence            44566552 26677899999999999998887753 5443

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=91.36  E-value=0.081  Score=36.57  Aligned_cols=26  Identities=19%  Similarity=0.165  Sum_probs=21.8

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcC
Q 037090          144 FERLNQFVDVADGLGENKNILLTKIS  169 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P  169 (178)
                      .....+|+|+|+|+|.++++.+++..
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~ga   64 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASEGW   64 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTC
T ss_pred             ccCCCeEEEeccccchhhhhhhhccc
Confidence            34557999999999999999888754

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=91.35  E-value=0.088  Score=39.37  Aligned_cols=28  Identities=18%  Similarity=0.164  Sum_probs=23.2

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLN  174 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~  174 (178)
                      +..+++|+|||.|..+..++ ++|+.+++
T Consensus       110 ~~~~vld~g~GsG~i~~~la-~~~~~~v~  137 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVA-KFSDAIVF  137 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHH-HHSSCEEE
T ss_pred             cccEEEEeeeeeehhhhhhh-hcccceee
Confidence            34689999999999999987 57988754

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.45  E-value=0.14  Score=37.11  Aligned_cols=35  Identities=9%  Similarity=0.022  Sum_probs=27.5

Q ss_pred             HHHHhcC--CCCCCCeEEEecCCccHHHHHHHHhc-CC
Q 037090          136 EILETYK--GFERLNQFVDVADGLGENKNILLTKI-SI  170 (178)
Q Consensus       136 ~~~~~~~--~~~~~~~vVDVGGg~G~~~~~i~~~~-P~  170 (178)
                      .++...+  ++.+..+|+|+|+|+|.....+++.- |.
T Consensus        61 ~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~   98 (227)
T d1g8aa_          61 AIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWE   98 (227)
T ss_dssp             HHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTT
T ss_pred             HHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCC
Confidence            3554444  26778899999999999999999976 54

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.92  E-value=0.19  Score=36.12  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=27.5

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090          135 KEILETYKGFERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ..+++..+ ..+..+|+|||+|+|..+..+++-.
T Consensus        68 a~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~  100 (215)
T d1jg1a_          68 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIV  100 (215)
T ss_dssp             HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHH
T ss_pred             HHHHHhhc-cCccceEEEecCCCChhHHHHHHhh
Confidence            45677777 8888899999999999998887764

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=89.21  E-value=0.21  Score=34.69  Aligned_cols=23  Identities=22%  Similarity=0.196  Sum_probs=20.9

Q ss_pred             CeEEEecCCccHHHHHHHHhcCC
Q 037090          148 NQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       148 ~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      .+|+|+++|+|.++++.+.+...
T Consensus        45 ~~vLDlfaGsG~~giealsrGa~   67 (183)
T d2fpoa1          45 AQCLDCFAGSGALGLEALSRYAA   67 (183)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCS
T ss_pred             hhhhhhhccccceeeeEEecCcc
Confidence            58999999999999999998765

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.07  E-value=0.051  Score=39.38  Aligned_cols=24  Identities=8%  Similarity=0.105  Sum_probs=18.3

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhc
Q 037090          145 ERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      .+..+|+|||||+|.++..++++.
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~   73 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDS   73 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT
T ss_pred             CCCCEEEEECCCCCHhHHHHhccc
Confidence            345689999999998876665543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.67  E-value=0.23  Score=35.75  Aligned_cols=33  Identities=18%  Similarity=0.171  Sum_probs=25.1

Q ss_pred             HHHHHhcC-CCCCCCeEEEecCCccHHHHHHHHh
Q 037090          135 KEILETYK-GFERLNQFVDVADGLGENKNILLTK  167 (178)
Q Consensus       135 ~~~~~~~~-~~~~~~~vVDVGGg~G~~~~~i~~~  167 (178)
                      ..+++... +..+..+|+|||+|+|..+..+++.
T Consensus        68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l  101 (223)
T d1r18a_          68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRY  101 (223)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHH
Confidence            34566552 2667789999999999998887765

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=88.22  E-value=0.15  Score=37.29  Aligned_cols=33  Identities=18%  Similarity=0.304  Sum_probs=29.0

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          144 FERLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      +....+++|||-|-|.=++-++=.+|+++.+++
T Consensus        68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lv  100 (239)
T d1xdza_          68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIV  100 (239)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEE
T ss_pred             ccCCCeEEeecCCCchHHHHHHHhCCCccceee
Confidence            445679999999999999999999999998775

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=86.80  E-value=0.34  Score=34.53  Aligned_cols=31  Identities=19%  Similarity=0.183  Sum_probs=27.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      ..++++|||.|-|.=++-++-.+|+++.+++
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lv   95 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLL   95 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEE
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEE
Confidence            3468999999999999999999999998875

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=85.39  E-value=0.33  Score=36.80  Aligned_cols=31  Identities=13%  Similarity=0.152  Sum_probs=26.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090          146 RLNQFVDVADGLGENKNILLTKISIISLNTI  176 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~  176 (178)
                      +.++|+.||||.|..+.++++..|..+.+++
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~V  107 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMV  107 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEE
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEe
Confidence            4579999999999999999988777776654

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.82  E-value=0.43  Score=35.07  Aligned_cols=25  Identities=16%  Similarity=0.048  Sum_probs=21.4

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhc
Q 037090          144 FERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ..+..+|||+|+|+|.+++.++++.
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~  129 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYG  129 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHT
T ss_pred             cCCccEEEECcceEcHHHHHHHHhC
Confidence            3456799999999999999999864

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.41  E-value=0.2  Score=36.69  Aligned_cols=25  Identities=8%  Similarity=-0.009  Sum_probs=18.1

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHhc
Q 037090          144 FERLNQFVDVADGLGENKNILLTKI  168 (178)
Q Consensus       144 ~~~~~~vVDVGGg~G~~~~~i~~~~  168 (178)
                      ..+..+|+|||||+|.+....+.++
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~   76 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSH   76 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGG
T ss_pred             CCCCcEEEEeccCCCHHHHHHhccc
Confidence            3456799999999998765444443

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=81.92  E-value=1.6  Score=29.85  Aligned_cols=25  Identities=12%  Similarity=-0.057  Sum_probs=21.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHhcCC
Q 037090          146 RLNQFVDVADGLGENKNILLTKISI  170 (178)
Q Consensus       146 ~~~~vVDVGGg~G~~~~~i~~~~P~  170 (178)
                      +.++|+|+.+|+|.++.+.+.+-..
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~   65 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMD   65 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCS
T ss_pred             CCCEEEEcccccccccceeeecchh
Confidence            4578999999999999999998754

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=80.61  E-value=0.72  Score=34.11  Aligned_cols=30  Identities=10%  Similarity=0.132  Sum_probs=23.8

Q ss_pred             CCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090          145 ERLNQFVDVADGLGENKNILLTKISIISLNT  175 (178)
Q Consensus       145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v  175 (178)
                      .+.+.|+-||||.|..+.++++ +|..+.++
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~  100 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIM  100 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTT-SCCSEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHH-hCCceEEE
Confidence            3457999999999999999986 66666554