Citrus Sinensis ID: 037092

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKNH
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHccHHHHHHccccccccHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHcccc
Coil and Loop (DISEMBL)
mkpwgfpdeeDRLICRLFAISgsrwsvigahlpgrtdnetnnyyrntklkrkheegglkvpmkknLERDLRIVKNH
Flexible Loop (DISEMBL)
mkpwgfpdeeDRLICRLFAISGSrwsvigahlpgrtdnetnnyyrntklkrkheegglkvpmkknlerdlrivknh
Low Complexity Region (SEG)
MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKNH
Disordered region (IsUnstruct)
**********DRLICRLFAISGSRWSVIGAHLPG******************************************
Disordered Region (DISOPRED)
*KPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKR*************************
Disordered Region (DISEMBL)
MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKNH
Disordered Region (DISPRO)
***WGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVK**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKNH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	76	2.2.26 [Sep-21-2011]
Q9FG68	329	Transcription factor RAX1	no	no	0.605	0.139	0.659	8e-11
Q9M2Y9	310	Transcription factor RAX3	no	no	0.671	0.164	0.557	4e-10
Q9SJL7	298	Transcription factor RAX2	no	no	0.605	0.154	0.659	8e-10
Q0JIC2	553	Transcription factor GAMY	no	no	0.723	0.099	0.482	1e-08
A2WW87	553	Transcription factor GAMY	N/A	no	0.723	0.099	0.482	1e-08
Q38851	236	Transcription repressor M	no	no	0.605	0.194	0.531	9e-08
Q9S9K9	257	Transcription factor MYB3	no	no	0.671	0.198	0.519	1e-07
P80073	421	Myb-related protein Pp2 O	N/A	no	0.684	0.123	0.528	1e-07
P52551	743	Myb-related protein B OS=	N/A	no	0.75	0.076	0.448	2e-07
P81393	232	Myb-related protein 308 O	N/A	no	0.671	0.219	0.5	2e-07

>sp|Q9FG68|RAX1_ARATH Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 38/47 (80%), Gaps = 1/47 (2%)

Query: 6   FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
           F +EEDR+I  LFA  GSRWS+I AHLPGRTDN+  NY+ NTKL++K
Sbjct: 71  FSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYW-NTKLRKK 116

Transcription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2Y9|RAX3_ARATH Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/52 (55%), Positives = 39/52 (75%), Gaps = 1/52 (1%)

Query: 1   MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
           +K  GF +EE+ +IC L+   GSRWS+I A LPGRTDN+  NY+ NT+LK+K
Sbjct: 66  IKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYW-NTRLKKK 116

Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJL7|RAX2_ARATH Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 36/47 (76%), Gaps = 1/47 (2%)

Query: 6   FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
           F +EED +I  LFA  GSRWSVI AHL GRTDN+  NY+ NTKLK+K
Sbjct: 71  FTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYW-NTKLKKK 116

Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JIC2|GAM1_ORYSJ Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 1   MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEG 56
           +K   F  EE+RLI +L +  G++W+ + AHLPGRTDNE  NY+ NT++KR    G
Sbjct: 93  LKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYW-NTRIKRCQRAG 147

Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 1   MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEG 56
           +K   F  EE+RLI +L +  G++W+ + AHLPGRTDNE  NY+ NT++KR    G
Sbjct: 93  LKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYW-NTRIKRCQRAG 147

Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 36/47 (76%), Gaps = 1/47 (2%)

Query: 6   FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
           F D+ED++I +L ++ G++WS+I   LPGRTDNE  NY+ NT +KRK
Sbjct: 70  FTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYW-NTHIKRK 115

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 1   MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
           +K   F +EED LI +L ++ G++WS+I   LPGRTDNE  NY+ NT +KRK
Sbjct: 65  LKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYW-NTHIKRK 115

Arabidopsis thaliana (taxid: 3702)

>sp|P80073|MYB2_PHYPA Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens GN=PP2 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 6   FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGL 58
           F + E+ LI  L A  G+RWS I A LPGRTDNE  NY+ NT+LK++    GL
Sbjct: 70  FSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYW-NTRLKKRLRSQGL 121

Possible transcription activator.

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|P52551|MYBB_XENLA Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 1   MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGL 58
           +K   + +EEDR+IC+   + G+RW+ I   LPGRTDN   N++ N+ +KRK E GG 
Sbjct: 133 VKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHW-NSTIKRKVETGGF 189

Xenopus laevis (taxid: 8355)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 1   MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
           +K   F +EED LI +L ++ G++WS+I   LPGRTDNE  NY+ NT ++RK
Sbjct: 65  LKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYW-NTHIRRK 115

Transcription factor.

Antirrhinum majus (taxid: 4151)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
224092242	302	predicted protein [Populus trichocarpa]	0.842	0.211	0.523	3e-11
414589011	295	TPA: putative MYB DNA-binding domain sup	0.723	0.186	0.607	5e-11
357153754	312	PREDICTED: myb-related protein B-like [B	0.881	0.214	0.521	8e-11
71041104	348	MYB24 [Malus x domestica]	0.605	0.132	0.723	9e-11
224118410	337	predicted protein [Populus trichocarpa]	0.605	0.136	0.702	1e-10
356541944	340	PREDICTED: protein ODORANT1-like [Glycin	0.605	0.135	0.702	1e-10
224106830	338	predicted protein [Populus trichocarpa]	0.605	0.136	0.702	2e-10
374341580	317	ntrax [Nicotiana tabacum]	0.605	0.145	0.659	2e-10
315115075	262	DNA-binding transcription factor blind 2	0.605	0.175	0.680	3e-10
242044004	386	hypothetical protein SORBIDRAFT_02g01286	0.605	0.119	0.659	4e-10

>gi|224092242|ref|XP_002309524.1| predicted protein [Populus trichocarpa] gi|222855500|gb|EEE93047.1| predicted protein [Populus trichocarpa]

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 1/65 (1%)

Query: 1   MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKV 60
           +K  GF +EED +IC L++  GSRWS+I A LPGRTDN+  NY+ NTKLK+K   G + +
Sbjct: 66  IKHGGFTEEEDNIICTLYSQMGSRWSLIAAQLPGRTDNDVKNYW-NTKLKKKILAGKISL 124

Query: 61  PMKKN 65
            +K N
Sbjct: 125 TIKNN 129

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414589011|tpg|DAA39582.1| TPA: putative MYB DNA-binding domain superfamily protein [Zea mays]

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 41/56 (73%), Gaps = 1/56 (1%)

Query: 1   MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEG 56
           +K   F D+EDR+IC LFA  GSRWS+I A LPGRTDN+  NY+ NTKLK+K   G
Sbjct: 66  LKHGDFSDDEDRIICSLFATIGSRWSIIAAQLPGRTDNDIKNYW-NTKLKKKLVHG 120

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357153754|ref|XP_003576555.1| PREDICTED: myb-related protein B-like [Brachypodium distachyon]

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 2/69 (2%)

Query: 5   GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKK 64
           GF DEEDRLIC L+   GSRWS I   LPGRTDN+  NY+ NTKLKR+    G + P++ 
Sbjct: 70  GFTDEEDRLICSLYVSIGSRWSTIAGQLPGRTDNDVKNYW-NTKLKRRLLGAGRR-PIRY 127

Query: 65  NLERDLRIV 73
            L +  R++
Sbjct: 128 ALAQQPRLL 136

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71041104|gb|AAZ20440.1| MYB24 [Malus x domestica]

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 38/47 (80%), Gaps = 1/47 (2%)

Query: 6   FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
           F DEEDR+IC LFA  GSRWSVI A LPGRTDN+  NY+ NTKLK+K
Sbjct: 71  FSDEEDRIICSLFASIGSRWSVIAAQLPGRTDNDIKNYW-NTKLKKK 116

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118410|ref|XP_002331475.1| predicted protein [Populus trichocarpa] gi|222873553|gb|EEF10684.1| predicted protein [Populus trichocarpa]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 38/47 (80%), Gaps = 1/47 (2%)

Query: 6   FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
           F DEEDR+IC LFA  GSRWS+I A LPGRTDN+  NY+ NTKLK+K
Sbjct: 71  FSDEEDRVICSLFASIGSRWSIIAAQLPGRTDNDIKNYW-NTKLKKK 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541944|ref|XP_003539432.1| PREDICTED: protein ODORANT1-like [Glycine max]

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 38/47 (80%), Gaps = 1/47 (2%)

Query: 6   FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
           F DEEDR+IC L+A  GSRWS+I A LPGRTDN+  NY+ NTKLKRK
Sbjct: 71  FSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYW-NTKLKRK 116

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106830|ref|XP_002314299.1| predicted protein [Populus trichocarpa] gi|222850707|gb|EEE88254.1| predicted protein [Populus trichocarpa]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 38/47 (80%), Gaps = 1/47 (2%)

Query: 6   FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
           F DEEDR+IC LFA  GSRWS+I A LPGRTDN+  NY+ NTKLK+K
Sbjct: 71  FSDEEDRVICSLFANIGSRWSIIAAQLPGRTDNDIKNYW-NTKLKKK 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374341580|gb|AEZ35207.1| ntrax [Nicotiana tabacum]

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/47 (65%), Positives = 37/47 (78%), Gaps = 1/47 (2%)

Query: 6   FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
           F DEEDR+IC L+A  GSRWS+I   LPGRTDN+  NY+ NTKLK+K
Sbjct: 71  FSDEEDRVICSLYASIGSRWSIIAGQLPGRTDNDIKNYW-NTKLKKK 116

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315115075|gb|ADT80571.1| DNA-binding transcription factor blind 2 [Gossypium hirsutum]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/47 (68%), Positives = 39/47 (82%), Gaps = 1/47 (2%)

Query: 6   FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
           F D+EDR+IC LFA  GSRWS+I A+LPGRTDN+  NY+ NTKLK+K
Sbjct: 71  FSDDEDRIICNLFASIGSRWSIIAANLPGRTDNDIKNYW-NTKLKKK 116

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242044004|ref|XP_002459873.1| hypothetical protein SORBIDRAFT_02g012860 [Sorghum bicolor] gi|241923250|gb|EER96394.1| hypothetical protein SORBIDRAFT_02g012860 [Sorghum bicolor]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/47 (65%), Positives = 37/47 (78%), Gaps = 1/47 (2%)

Query: 6   FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
           F D+EDR+IC LF   GSRWS+I A LPGRTDN+  NY+ NTKLK+K
Sbjct: 137 FSDDEDRIICNLFTTIGSRWSIIAAQLPGRTDNDIKNYW-NTKLKKK 182

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
TAIR|locus:2181146	329	MYB37 "myb domain protein 37"	0.671	0.155	0.615	4.5e-12
TAIR|locus:2137589	305	MYB87 "myb domain protein 87"	0.671	0.167	0.576	7.6e-12
TAIR|locus:2169970	374	MYB68 "myb domain protein 68"	0.671	0.136	0.576	8.4e-12
TAIR|locus:2174557	333	MYB36 "myb domain protein 36"	0.671	0.153	0.596	2.2e-11
TAIR|locus:2097335	310	MYB84 "myb domain protein 84"	0.671	0.164	0.557	2.3e-11
TAIR|locus:2057931	298	RAX2 "REGULATOR OF AXILLARY ME	0.605	0.154	0.659	5.6e-11
TAIR|locus:2133677	236	MYB6 "myb domain protein 6" [A	0.671	0.216	0.5	4.9e-10
TAIR|locus:2009452	257	MYB3 "myb domain protein 3" [A	0.671	0.198	0.519	7.4e-10
TAIR|locus:2152830	520	MYB33 "myb domain protein 33"	0.868	0.126	0.447	1.1e-09
TAIR|locus:2059883	269	MYB7 "myb domain protein 7" [A	0.671	0.189	0.519	1.5e-09

TAIR|locus:2181146 MYB37 "myb domain protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 4.5e-12, P = 4.5e-12
 Identities = 32/52 (61%), Positives = 40/52 (76%)

Query:     1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
             +K   F +EEDR+I  LFA  GSRWS+I AHLPGRTDN+  NY+ NTKL++K
Sbjct:    66 IKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYW-NTKLRKK 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2137589 MYB87 "myb domain protein 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 7.6e-12, P = 7.6e-12
 Identities = 30/52 (57%), Positives = 39/52 (75%)

Query:     1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
             +K  GF DEED +IC L+   GSRWS+I + LPGRTDN+  NY+ NT+LK+K
Sbjct:    66 LKHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYW-NTRLKKK 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2169970 MYB68 "myb domain protein 68" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 8.4e-12, P = 8.4e-12
 Identities = 30/52 (57%), Positives = 39/52 (75%)

Query:     1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
             +K  GF +EED +IC L+   GSRWS+I A LPGRTDN+  NY+ NT+LK+K
Sbjct:    66 IKHGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGRTDNDIKNYW-NTRLKKK 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2174557 MYB36 "myb domain protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 31/52 (59%), Positives = 39/52 (75%)

Query:     1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
             +K  GF +EEDR+I  L+   GSRWS+I A LPGRTDN+  NY+ NTKLK+K
Sbjct:    66 IKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYW-NTKLKKK 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2097335 MYB84 "myb domain protein 84" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 29/52 (55%), Positives = 39/52 (75%)

Query:     1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
             +K  GF +EE+ +IC L+   GSRWS+I A LPGRTDN+  NY+ NT+LK+K
Sbjct:    66 IKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYW-NTRLKKK 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2057931 RAX2 "REGULATOR OF AXILLARY MERISTEMS 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 5.6e-11, P = 5.6e-11
 Identities = 31/47 (65%), Positives = 36/47 (76%)

Query:     6 FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
             F +EED +I  LFA  GSRWSVI AHL GRTDN+  NY+ NTKLK+K
Sbjct:    71 FTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYW-NTKLKKK 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009785 "blue light signaling pathway" evidence=IMP

TAIR|locus:2133677 MYB6 "myb domain protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.9e-10, P = 4.9e-10
 Identities = 26/52 (50%), Positives = 38/52 (73%)

Query:     1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
             +K   F D+ED++I +L ++ G++WS+I   LPGRTDNE  NY+ NT +KRK
Sbjct:    65 LKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYW-NTHIKRK 115

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2009452 MYB3 "myb domain protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 7.4e-10, P = 7.4e-10
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query:     1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
             +K   F +EED LI +L ++ G++WS+I   LPGRTDNE  NY+ NT +KRK
Sbjct:    65 LKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYW-NTHIKRK 115

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0009800 "cinnamic acid biosynthetic process" evidence=TAS

GO:0009892 "negative regulation of metabolic process" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2152830 MYB33 "myb domain protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 30/67 (44%), Positives = 43/67 (64%)

Query:     1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKV 60
             +K   F  EE++LI  L A  G+RW+ + AHLPGRTDNE  NY+ NT++KR+   G    
Sbjct:    85 LKKGAFSQEEEQLIVELHAKMGNRWARMAAHLPGRTDNEIKNYW-NTRIKRRQRAGLPLY 143

Query:    61 PMKKNLE 67
             P + ++E
Sbjct:   144 PPEMHVE 150

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0048235 "pollen sperm cell differentiation" evidence=IGI

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

TAIR|locus:2059883 MYB7 "myb domain protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query:     1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
             +K   F  +ED LI +L ++ G++WS+I A LPGRTDNE  NY+ NT +KRK
Sbjct:    65 LKRGNFTHDEDELIIKLHSLLGNKWSLIAARLPGRTDNEIKNYW-NTHIKRK 115

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: MYB099 hypothetical protein (118 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	76
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	2e-10
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	3e-09
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-05
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	4e-05
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-04

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score = 54.2 bits (130), Expect = 2e-10
 Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 1   MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGL 58
           +K   F  +E+ LI  L A+ G+RWS I A LPGRTDNE  N + N+ LK+K  + G+
Sbjct: 65  LKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLW-NSCLKKKLRQRGI 121

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score = 50.8 bits (121), Expect = 3e-09
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 1   MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKV 60
           +K  G   +E+ LI RL  + G+RWS+I   +PGRTDNE  NY+ NT L++K    G+  
Sbjct: 76  VKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYW-NTHLRKKLLRQGIDP 134

Query: 61  PMKKNLE 67
              K L+
Sbjct: 135 QTHKPLD 141

Length = 249

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 37.5 bits (88), Expect = 2e-05
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 8  DEEDRLICRLFAISGSR-WSVIGAHLPGRTDNETNNYYRNTK 48
           EED L+       G+  WS I  HLPGRTDN+  N + N  
Sbjct: 6  PEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 36.8 bits (86), Expect = 4e-05
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 6  FPDEEDRLICRLFAISGS-RWSVIGAHLPGRTDNETNNYYRNTK 48
          + +EED L+       G   W  I   LPGRT  +    +RN  
Sbjct: 2  WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 34.9 bits (81), Expect = 2e-04
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 6  FPDEEDRLICRLFAISGS-RWSVIGAHLPGRTDNETNNYYRNTK 48
          + +EED L+  L    G   W  I   LPGRT  +    +RN  
Sbjct: 4  WTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLL 47

Length = 49

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	76
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.86
PLN03212	249	Transcription repressor MYB5; Provisional	99.85
PLN03212	249	Transcription repressor MYB5; Provisional	99.82
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.81
PLN03091	459	hypothetical protein; Provisional	99.81
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.77
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.76
PLN03091	459	hypothetical protein; Provisional	99.75
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.66
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.58
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.44
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.92
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.87
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.76
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.63
KOG0049	939	consensus Transcription factor, Myb superfamily [T	98.49
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	98.39
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	98.38
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	98.26
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.09
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	98.01
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	97.91
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.87
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.77
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	97.64
PRK13923	170	putative spore coat protein regulator protein YlbO	97.62
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	97.43
KOG0051	607	consensus RNA polymerase I termination factor, Myb	96.72
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	96.5
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	96.46
KOG2656	445	consensus DNA methyltransferase 1-associated prote	96.2
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	95.6
KOG4282	345	consensus Transcription factor GT-2 and related pr	95.51
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	95.21
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	94.45
PF07750	162	GcrA: GcrA cell cycle regulator; InterPro: IPR0116	94.4
KOG1194	534	consensus Predicted DNA-binding protein, contains	93.89
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	93.24
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	90.86
TIGR02985	161	Sig70_bacteroi1 RNA polymerase sigma-70 factor, Ba	90.62
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	89.95
PF04545	50	Sigma70_r4: Sigma-70, region 4; InterPro: IPR00763	89.72
KOG4167	907	consensus Predicted DNA-binding protein, contains	89.63
PRK11179	153	DNA-binding transcriptional regulator AsnC; Provis	88.48
KOG2009	584	consensus Transcription initiation factor TFIIIB,	88.46
PF13936	44	HTH_38: Helix-turn-helix domain; PDB: 2W48_A.	87.57
cd08319	83	Death_RAIDD Death domain of RIP-associated ICH-1 h	85.16
PRK11169	164	leucine-responsive transcriptional regulator; Prov	85.1
KOG4468	782	consensus Polycomb-group transcriptional regulator	83.49
cd08803	84	Death_ank3 Death domain of Ankyrin-3. Death Domain	83.33
PRK09643	192	RNA polymerase sigma factor SigM; Reviewed	83.25
smart00595	89	MADF subfamily of SANT domain.	83.21
PRK09641	187	RNA polymerase sigma factor SigW; Provisional	82.96
COG5352	169	Uncharacterized protein conserved in bacteria [Fun	82.74
PF13404	42	HTH_AsnC-type: AsnC-type helix-turn-helix domain;	82.12
TIGR02937	158	sigma70-ECF RNA polymerase sigma factor, sigma-70	81.73
PRK09652	182	RNA polymerase sigma factor RpoE; Provisional	81.11
PRK09645	173	RNA polymerase sigma factor SigL; Provisional	81.09
PRK11924	179	RNA polymerase sigma factor; Provisional	80.78
TIGR02939	190	RpoE_Sigma70 RNA polymerase sigma factor RpoE. A s	80.74
cd08317	84	Death_ank Death domain associated with Ankyrins. D	80.27
PRK12532	195	RNA polymerase sigma factor; Provisional	80.17

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.86  E-value=4.4e-22  Score=134.27  Aligned_cols=61  Identities=48%  Similarity=0.769  Sum_probs=56.8

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCC
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPM   62 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~   62 (76)
                      |++|+||+|||.+|+++|..+|++|+.||++|||||||.|||+| ++.+++++......+..
T Consensus        60 ikrg~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~W-nt~lkkkl~~~~~~~~~  120 (238)
T KOG0048|consen   60 LKRGNFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHW-NTHLKKKLLKMGIDPST  120 (238)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHH-HHHHHHHHHHcCCCCCc
Confidence            68999999999999999999999999999999999999999999 99999999987754443

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.85  E-value=2.2e-21  Score=131.42  Aligned_cols=65  Identities=43%  Similarity=0.762  Sum_probs=60.7

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhH
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNL   66 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~   66 (76)
                      |++++||+|||++|+++|..||++|+.||++|||||+++||||| ++.+++++...+..|.+.+++
T Consensus        76 I~kgpWT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRW-ns~LrK~l~r~~i~p~~~kp~  140 (249)
T PLN03212         76 VKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYW-NTHLRKKLLRQGIDPQTHKPL  140 (249)
T ss_pred             cccCCCChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHH-HHHHhHHHHhcCCCCCCCCCC
Confidence            68999999999999999999999999999999999999999999 999999999888888776654

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.82  E-value=1.7e-20  Score=127.03  Aligned_cols=75  Identities=20%  Similarity=0.299  Sum_probs=70.0

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CchhhhhhcC-CCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhhcC
Q 037092            1 MKPWGFPDEEDRLICRLFAISG-SRWSVIGAHL-PGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKNH   76 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~-~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h   76 (76)
                      |++++||+|||++|+++|.+|| .+|+.||..+ +|||+.||+.|| ..+|.+.+.+++|+++++..+.+.+..++++
T Consensus        23 lKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW-~N~L~P~I~kgpWT~EED~lLlel~~~~GnK   99 (249)
T PLN03212         23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRW-MNYLRPSVKRGGITSDEEDLILRLHRLLGNR   99 (249)
T ss_pred             CcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHH-HHhhchhcccCCCChHHHHHHHHHHHhcccc
Confidence            6899999999999999999999 6899999998 699999999999 9999999999999999999999888877753

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.81  E-value=2e-20  Score=126.21  Aligned_cols=73  Identities=12%  Similarity=0.083  Sum_probs=70.1

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CchhhhhhcCC-CCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhhcC
Q 037092            3 PWGFPDEEDRLICRLFAISG-SRWSVIGAHLP-GRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKNH   76 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~-gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h   76 (76)
                      +||||+|||++|+++|.+|| .+|..||+.++ ||++.+||-|| .+||++.++++.|+++++..+.++.++++|.
T Consensus         9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW-~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr   83 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRW-TNYLRPDLKRGNFSDEEEDLIIKLHALLGNR   83 (238)
T ss_pred             CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHh-hcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence            49999999999999999999 56999999999 99999999999 9999999999999999999999999999874

>PLN03091 hypothetical protein; Provisional

Probab=99.81  E-value=3.8e-20  Score=133.26  Aligned_cols=67  Identities=43%  Similarity=0.701  Sum_probs=60.5

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHH
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLER   68 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~   68 (76)
                      |++|+||+|||++|+++|..||++|+.||.+|||||+++||||| +..++++++..+..+.+..++.+
T Consensus        65 IkKgpWT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRW-nslLKKklr~~~I~p~t~kpl~e  131 (459)
T PLN03091         65 LKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLW-NSCLKKKLRQRGIDPNTHKPLSE  131 (459)
T ss_pred             ccCCCCCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHcCCCCCCCCCccc
Confidence            68999999999999999999999999999999999999999999 99999999887777666655443

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.77  E-value=4.2e-19  Score=97.05  Aligned_cols=58  Identities=28%  Similarity=0.466  Sum_probs=49.7

Q ss_pred             CChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCch
Q 037092            6 FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKK   64 (76)
Q Consensus         6 wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~   64 (76)
                      ||+|||++|+.+|..||++|+.||..|+.||..+|++|| ...|.+.+...+|++.++.
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~-~~~l~~~~~~~~wt~eEd~   58 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRW-RNHLRPKISRGPWTKEEDQ   58 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHH-HHTTSTTSTSSSSSHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHH-HHHCcccccCCCcCHHHHh
Confidence            999999999999999999999999999669999999999 7778888888888776554

...

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.76  E-value=7.7e-19  Score=92.64  Aligned_cols=45  Identities=24%  Similarity=0.462  Sum_probs=40.7

Q ss_pred             CCCCChHHHHHHHHHHHHhCCc-hhhhhhcCC-CCCHHHHHHHHhhch
Q 037092            3 PWGFPDEEDRLICRLFAISGSR-WSVIGAHLP-GRTDNETNNYYRNTK   48 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~-W~~Ia~~~~-gRt~~~~knrw~~~~   48 (76)
                      |++||+|||++|++++.+||.. |..||..|| |||+.||++|| +.+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~-~~~   47 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRY-QNL   47 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHH-HHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHH-Hhh
Confidence            6899999999999999999988 999999999 99999999999 654

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PLN03091 hypothetical protein; Provisional

Probab=99.75  E-value=9e-19  Score=126.19  Aligned_cols=75  Identities=15%  Similarity=0.183  Sum_probs=70.0

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CchhhhhhcC-CCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhhcC
Q 037092            1 MKPWGFPDEEDRLICRLFAISG-SRWSVIGAHL-PGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKNH   76 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~-~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h   76 (76)
                      |++++||+|||++|+++|.+|| .+|+.||+.+ +|||+.||+.|| ..+|.+.+.+++|+++++..+.+.++.++++
T Consensus        12 lrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW-~NyLdP~IkKgpWT~EED~lLLeL~k~~GnK   88 (459)
T PLN03091         12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRW-INYLRPDLKRGTFSQQEENLIIELHAVLGNR   88 (459)
T ss_pred             CcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHH-HhccCCcccCCCCCHHHHHHHHHHHHHhCcc
Confidence            5799999999999999999999 5799999988 499999999999 9999999999999999999999998887753

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.66  E-value=2.8e-16  Score=80.99  Aligned_cols=46  Identities=33%  Similarity=0.588  Sum_probs=42.9

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhchh
Q 037092            3 PWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNTKL   49 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~~l   49 (76)
                      +++||++||.+|+.++..|| ..|..||..||+||+.+|+++| +.++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~-~~~~   47 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERW-NNLL   47 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHH-HHHc
Confidence            47999999999999999999 9999999999999999999999 6544

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.58  E-value=5.7e-15  Score=75.01  Aligned_cols=42  Identities=29%  Similarity=0.582  Sum_probs=40.2

Q ss_pred             CCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhc
Q 037092            5 GFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNT   47 (76)
Q Consensus         5 ~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~   47 (76)
                      +||+|||..|+.++..+| .+|..||..|++||+.+|+++| +.
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~-~~   43 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERW-RN   43 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHH-HH
Confidence            699999999999999999 8999999999999999999999 54

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.44  E-value=2.5e-13  Score=102.13  Aligned_cols=73  Identities=19%  Similarity=0.368  Sum_probs=68.5

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCc-hhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhh
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSR-WSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVK   74 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~-W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   74 (76)
                      |++|+||++||-+|+.+|.+||.+ |.+|-..||||++.||+.|| .+.|...++.+.|+..++..+...+...+
T Consensus       358 ikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY-~nvL~~s~K~~rW~l~edeqL~~~V~~YG  431 (939)
T KOG0049|consen  358 VKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERY-TNVLNRSAKVERWTLVEDEQLLYAVKVYG  431 (939)
T ss_pred             ccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHH-HHHHHHhhccCceeecchHHHHHHHHHHc
Confidence            689999999999999999999955 99999999999999999999 99999999999999999999988887665

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.92  E-value=5.8e-10  Score=82.41  Aligned_cols=74  Identities=18%  Similarity=0.203  Sum_probs=67.0

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhhc
Q 037092            1 MKPWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKN   75 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (76)
                      ++.|+|+..||+.+..++..|| ++|+.||..|.-+++++|++|| +.++.+.+....++..++..+...-..++.
T Consensus        18 ~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw-~~~lnp~lk~~~~~~eed~~li~l~~~~~~   92 (512)
T COG5147          18 RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRW-NNHLNPQLKKKNWSEEEDEQLIDLDKELGT   92 (512)
T ss_pred             ecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchh-hhhhchhcccccccHHHHHHHHHHHHhcCc
Confidence            3679999999999999999999 6799999999999999999999 999999999999999888888777666554

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.87  E-value=3e-09  Score=79.69  Aligned_cols=68  Identities=21%  Similarity=0.382  Sum_probs=58.4

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhH--HhhCCCCCCCchhHHHHHH
Q 037092            2 KPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK--HEEGGLKVPMKKNLERDLR   71 (76)
Q Consensus         2 ~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~--~~~~~~~~~~~~~~~~~~~   71 (76)
                      .+|.||+||++.|..+|.++|+.|..|+..| ||.+..|+.+| ..+....  ...+.|+-++...+...+.
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~w-r~~~~~g~~~~r~~Ws~eEe~~Llk~V~  452 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRW-RQYVKCGSKRNRGAWSIEEEEKLLKTVN  452 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHH-HHhhccccccccCcchHHHHHHHHHHHH
Confidence            5899999999999999999999999999998 99999999999 6555544  4777788877777776665

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.76  E-value=7.4e-09  Score=76.61  Aligned_cols=71  Identities=15%  Similarity=0.199  Sum_probs=63.2

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHH
Q 037092            1 MKPWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRI   72 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (76)
                      |+-|.|+.-||++|-..|.+|| +.|+.|++.++-.|..||++|| +.++.+.+++..|+..++..+......
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw-~e~ldp~i~~tews~eederlLhlakl   76 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARW-EEWLDPAIKKTEWSREEDERLLHLAKL   76 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHH-HHHhCHHHhhhhhhhhHHHHHHHHHHh
Confidence            4668999999999999999999 6799999999999999999999 899999999999988877766655443

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.63  E-value=4.1e-08  Score=72.73  Aligned_cols=53  Identities=25%  Similarity=0.343  Sum_probs=47.9

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHh
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHE   54 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~   54 (76)
                      |+++.|+.|||..|+.+..++|++|+.||..+||||+.+|.++| ...+.....
T Consensus        70 lk~~~~~~eed~~li~l~~~~~~~wstia~~~d~rt~~~~~ery-~~~~~~~~s  122 (512)
T COG5147          70 LKKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERY-VNTLEDLSS  122 (512)
T ss_pred             cccccccHHHHHHHHHHHHhcCchhhhhccccCccchHHHHHHH-HHHhhhhhc
Confidence            57899999999999999999999999999999999999999999 766555444

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.49  E-value=1.2e-07  Score=72.20  Aligned_cols=72  Identities=19%  Similarity=0.273  Sum_probs=65.0

Q ss_pred             CCCCCChHHHHHHHHHHHHhC--C--chhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhh
Q 037092            2 KPWGFPDEEDRLICRLFAISG--S--RWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVK   74 (76)
Q Consensus         2 ~~~~wT~eED~~L~~~~~~~G--~--~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   74 (76)
                      +...||+|||.+|+.+|....  +  .|.+|-.+||||+..++--|| ...|.+.++.+.|++.++..+..++...+
T Consensus       304 ~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~-~~~LdPsikhg~wt~~ED~~L~~AV~~Yg  379 (939)
T KOG0049|consen  304 SEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRF-SHTLDPSVKHGRWTDQEDVLLVCAVSRYG  379 (939)
T ss_pred             HhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhh-eeccCccccCCCCCCHHHHHHHHHHHHhC
Confidence            346799999999999999976  2  399999999999999999999 89999999999999999999988887655

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=98.39  E-value=1.4e-06  Score=47.54  Aligned_cols=45  Identities=9%  Similarity=0.098  Sum_probs=38.9

Q ss_pred             CCCCChHHHHHHHHHHHHhCC-ch---hhhhhcCC-CC-CHHHHHHHHhhch
Q 037092            3 PWGFPDEEDRLICRLFAISGS-RW---SVIGAHLP-GR-TDNETNNYYRNTK   48 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~-~W---~~Ia~~~~-gR-t~~~~knrw~~~~   48 (76)
                      +-.||+||....++++..+|. .|   ..|+..|. .+ |..+|+.+. ..|
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~-QKy   53 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHL-QKY   53 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHH-HHH
Confidence            557999999999999999995 99   99999874 34 999999998 544

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=98.38  E-value=1e-06  Score=64.09  Aligned_cols=47  Identities=19%  Similarity=0.337  Sum_probs=42.4

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhchh
Q 037092            3 PWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNTKL   49 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~~l   49 (76)
                      .+.||.+|+-+|++++..|| ++|..||.++..+|...|+.+|++.++
T Consensus        72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   72 DPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            46899999999999999999 899999999999999999999943333

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=98.26  E-value=1.4e-06  Score=56.26  Aligned_cols=51  Identities=24%  Similarity=0.365  Sum_probs=43.5

Q ss_pred             CCCCCChHHHHHHHHHHHHh---CCc----hhhhhhcCCCCCHHHHHHHHhhchhhhHHh
Q 037092            2 KPWGFPDEEDRLICRLFAIS---GSR----WSVIGAHLPGRTDNETNNYYRNTKLKRKHE   54 (76)
Q Consensus         2 ~~~~wT~eED~~L~~~~~~~---G~~----W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~   54 (76)
                      +...||.|||.+|-+.|-.|   |+.    ...++..+ +||+-+|.-|| |+++++...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRW-Ns~VRkqY~   60 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRW-NAYVRKQYE   60 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchH-HHHHHHHHH
Confidence            46789999999999988887   433    67788888 99999999999 999997664

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.09  E-value=2.4e-06  Score=63.63  Aligned_cols=52  Identities=25%  Similarity=0.398  Sum_probs=46.3

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHh
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHE   54 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~   54 (76)
                      |++..||.|||+.|+.+...+...|..|+..| |||++||-.|| +..+--...
T Consensus        57 i~~tews~eederlLhlakl~p~qwrtIa~i~-gr~~~qc~eRy-~~ll~~~~s  108 (617)
T KOG0050|consen   57 IKKTEWSREEDERLLHLAKLEPTQWRTIADIM-GRTSQQCLERY-NNLLDVYVS  108 (617)
T ss_pred             HhhhhhhhhHHHHHHHHHHhcCCccchHHHHh-hhhHHHHHHHH-HHHHHHHHh
Confidence            57788999999999999999999999999998 99999999999 766654444

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=98.01  E-value=1.2e-05  Score=44.89  Aligned_cols=49  Identities=16%  Similarity=0.303  Sum_probs=31.3

Q ss_pred             CCCCChHHHHHHHHHHHHhC--------Cc-hhhhhhcCC-CCCHHHHHHHHhhchhhhH
Q 037092            3 PWGFPDEEDRLICRLFAISG--------SR-WSVIGAHLP-GRTDNETNNYYRNTKLKRK   52 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G--------~~-W~~Ia~~~~-gRt~~~~knrw~~~~l~~~   52 (76)
                      +-+||.|||.+|++.+..+.        ++ |..++..-| .+|-.+.++|| ...|..+
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry-~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRY-LKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHH-HHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcc
Confidence            46899999999999996542        22 999999887 99999999999 5545443

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=97.91  E-value=1.1e-05  Score=46.40  Aligned_cols=52  Identities=27%  Similarity=0.424  Sum_probs=35.1

Q ss_pred             CCCCChHHHHHHHHHHHH------hC--C------chhhhhhcC----CCCCHHHHHHHHhhchhhhHHhhC
Q 037092            3 PWGFPDEEDRLICRLFAI------SG--S------RWSVIGAHL----PGRTDNETNNYYRNTKLKRKHEEG   56 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~------~G--~------~W~~Ia~~~----~gRt~~~~knrw~~~~l~~~~~~~   56 (76)
                      +..||++|...||+++..      ++  +      -|..||..|    ..||+.||+++| ++ |++.....
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw-~~-L~~~Yk~~   70 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKW-KN-LKKKYKKI   70 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHH-HH-HHHHHHCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHH-HH-HHHHHHHH
Confidence            458999999999999888      32  1      399999887    479999999999 54 55555443

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.87  E-value=2.9e-05  Score=57.80  Aligned_cols=42  Identities=12%  Similarity=0.343  Sum_probs=40.7

Q ss_pred             CCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            3 PWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      ++.||.+|..+|++.+..||..|.+||.++.+||..+|--++
T Consensus       253 ~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kF  294 (506)
T KOG1279|consen  253 RPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKF  294 (506)
T ss_pred             CCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHH
Confidence            578999999999999999999999999999999999999998

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.77  E-value=4.3e-05  Score=56.43  Aligned_cols=42  Identities=14%  Similarity=0.277  Sum_probs=40.6

Q ss_pred             CCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            3 PWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      ..+||.+|-.+|++.+..||..|.+||.++..+|..||--+|
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~F  320 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHF  320 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHH
Confidence            458999999999999999999999999999999999999999

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.64  E-value=6.5e-05  Score=53.59  Aligned_cols=46  Identities=20%  Similarity=0.333  Sum_probs=41.9

Q ss_pred             CCCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhchh
Q 037092            4 WGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNTKL   49 (76)
Q Consensus         4 ~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~~l   49 (76)
                      ..|+..|+.+|++....+| ++|..||.++..|+...||.+|++.|+
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            4799999999999999999 899999999999999999999944444

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=97.62  E-value=7.2e-05  Score=48.83  Aligned_cols=50  Identities=16%  Similarity=0.274  Sum_probs=40.5

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCc-------hhhhhhcCCCCCHHHHHHHHhhchhhhHH
Q 037092            2 KPWGFPDEEDRLICRLFAISGSR-------WSVIGAHLPGRTDNETNNYYRNTKLKRKH   53 (76)
Q Consensus         2 ~~~~wT~eED~~L~~~~~~~G~~-------W~~Ia~~~~gRt~~~~knrw~~~~l~~~~   53 (76)
                      +...||.|||.+|-+.|-.|+..       ...++..+ +||.-+|.-|| |+++++..
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRw-Ns~vrk~Y   60 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRW-NSVVRKQY   60 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHH-HHHHHHHH
Confidence            56789999999998888888732       34556666 89999999999 99988654

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=97.43  E-value=0.00058  Score=38.47  Aligned_cols=43  Identities=21%  Similarity=0.389  Sum_probs=36.1

Q ss_pred             CCCCCChHHHHHHHHHHHHh-----C--C----------chhhhhhcC-----CCCCHHHHHHHH
Q 037092            2 KPWGFPDEEDRLICRLFAIS-----G--S----------RWSVIGAHL-----PGRTDNETNNYY   44 (76)
Q Consensus         2 ~~~~wT~eED~~L~~~~~~~-----G--~----------~W~~Ia~~~-----~gRt~~~~knrw   44 (76)
                      ++..||++|..+|++++.++     |  .          -|..|+..|     +.||..+++..|
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW   65 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKW   65 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence            35689999999999999987     3  1          199999876     369999999999

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=96.72  E-value=0.0025  Score=48.47  Aligned_cols=58  Identities=9%  Similarity=0.122  Sum_probs=44.6

Q ss_pred             CCCCCCChHHHHHHHHHHH-------Hh-------------------CCchhhhhhcCCCCCHHHHHHHHhhchhh-hHH
Q 037092            1 MKPWGFPDEEDRLICRLFA-------IS-------------------GSRWSVIGAHLPGRTDNETNNYYRNTKLK-RKH   53 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~-------~~-------------------G~~W~~Ia~~~~gRt~~~~knrw~~~~l~-~~~   53 (76)
                      +++|+||-||.+.|+++|.       ++                   +-.|+.|+..+..|+--||+-.| +..+. +..
T Consensus       434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw-~kl~~~~s~  512 (607)
T KOG0051|consen  434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKW-YKLTTSPSF  512 (607)
T ss_pred             cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHH-HHHHhhHHh
Confidence            3689999999999999996       33                   12499999999999999999999 55444 444


Q ss_pred             hhCCCC
Q 037092           54 EEGGLK   59 (76)
Q Consensus        54 ~~~~~~   59 (76)
                      ....+.
T Consensus       513 n~~~~~  518 (607)
T KOG0051|consen  513 NKRQES  518 (607)
T ss_pred             hccccc
Confidence            444443

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=96.50  E-value=0.011  Score=34.16  Aligned_cols=46  Identities=24%  Similarity=0.490  Sum_probs=34.0

Q ss_pred             CCChHHHHHHHHHHHHh---CCc----------hhhhhhcC---C--CCCHHHHHHHHhhchhhhH
Q 037092            5 GFPDEEDRLICRLFAIS---GSR----------WSVIGAHL---P--GRTDNETNNYYRNTKLKRK   52 (76)
Q Consensus         5 ~wT~eED~~L~~~~~~~---G~~----------W~~Ia~~~---~--gRt~~~~knrw~~~~l~~~   52 (76)
                      .||++++..|++++.+.   |+.          |..|+..|   +  .-|..+|+|||  ..|++.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~--~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKW--KTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHH--HHHHHH
Confidence            49999999999998664   211          88888877   2  34778999999  344443

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=96.46  E-value=0.0053  Score=37.88  Aligned_cols=47  Identities=28%  Similarity=0.419  Sum_probs=35.8

Q ss_pred             CCCCChHHHHHHHHHHHHhCC----chhhhhhcC------------CCCCHHHHHHHHhhchhh
Q 037092            3 PWGFPDEEDRLICRLFAISGS----RWSVIGAHL------------PGRTDNETNNYYRNTKLK   50 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~----~W~~Ia~~~------------~gRt~~~~knrw~~~~l~   50 (76)
                      +..||++||..|+-++.+||-    .|..|...+            ..||+..+..|. ++.++
T Consensus        49 ~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~-~tLi~  111 (118)
T PF09111_consen   49 KKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRC-NTLIK  111 (118)
T ss_dssp             -SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHH-HHHHH
T ss_pred             CCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHH-HHHHH
Confidence            568999999999999999996    687766533            579999999998 55443

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=96.20  E-value=0.0072  Score=44.16  Aligned_cols=56  Identities=16%  Similarity=0.172  Sum_probs=46.6

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCchhhhhhc-----CCC-CCHHHHHHHHhhchhhhHHhhCCC
Q 037092            2 KPWGFPDEEDRLICRLFAISGSRWSVIGAH-----LPG-RTDNETNNYYRNTKLKRKHEEGGL   58 (76)
Q Consensus         2 ~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~-----~~g-Rt~~~~knrw~~~~l~~~~~~~~~   58 (76)
                      +...||.||-+-|.+|+..|--+|..|+..     ++. ||-..+|.|| +...++-++....
T Consensus       129 ~dn~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRy-Y~v~r~l~kAr~~  190 (445)
T KOG2656|consen  129 NDNSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERY-YSVCRKLLKARAP  190 (445)
T ss_pred             ccccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHH-HHHHHHHHHccCC
Confidence            446799999999999999999999999987     665 9999999999 6666655554433

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=95.60  E-value=0.025  Score=41.51  Aligned_cols=41  Identities=17%  Similarity=0.380  Sum_probs=39.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            4 WGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         4 ~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      -+||.+|-++...+...+|...+.||..||.|.-.||+..|
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKf  406 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKF  406 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHH
Confidence            47999999999999999999999999999999999999998

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=95.51  E-value=0.068  Score=37.72  Aligned_cols=50  Identities=16%  Similarity=0.278  Sum_probs=38.2

Q ss_pred             CCCChHHHHHHHHHHHHh----------CCchhhhhhcC----CCCCHHHHHHHHhhchhhhHHhh
Q 037092            4 WGFPDEEDRLICRLFAIS----------GSRWSVIGAHL----PGRTDNETNNYYRNTKLKRKHEE   55 (76)
Q Consensus         4 ~~wT~eED~~L~~~~~~~----------G~~W~~Ia~~~----~gRt~~~~knrw~~~~l~~~~~~   55 (76)
                      ..|+.+|=..||++...+          +..|..||..+    .-||+.+|+++| .+ |.+++++
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~-~n-l~k~Yk~  118 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKI-EN-LKKKYKK  118 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHH-HH-HHHHHHH
Confidence            579999999999988764          23499999855    359999999999 44 4444443

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=95.21  E-value=0.058  Score=27.96  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=28.4

Q ss_pred             hHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            8 DEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         8 ~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      ++++..++.++...|-.+..||..+ |.|.+.|+.+.
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l   47 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRL   47 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHH
Confidence            5778888899999999999999999 89999999987

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=94.45  E-value=0.12  Score=34.61  Aligned_cols=50  Identities=16%  Similarity=0.181  Sum_probs=35.5

Q ss_pred             CCCCChHHHHHHHHHHHHhCCc---hhhhhh-----cCCCCCHHHHHHHHhhchhhhHH
Q 037092            3 PWGFPDEEDRLICRLFAISGSR---WSVIGA-----HLPGRTDNETNNYYRNTKLKRKH   53 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~---W~~Ia~-----~~~gRt~~~~knrw~~~~l~~~~   53 (76)
                      +-+||.+|+++|........+.   +..|=.     +-++||+.++.++| ....+..+
T Consensus        73 kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW-~lmkqy~L  130 (199)
T PF13325_consen   73 KALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHW-RLMKQYHL  130 (199)
T ss_pred             cCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHH-HHHHHhch
Confidence            5789999999999877666543   444322     33799999999999 54333333

>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator

Probab=94.40  E-value=0.06  Score=34.80  Aligned_cols=39  Identities=26%  Similarity=0.262  Sum_probs=35.4

Q ss_pred             CCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            5 GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         5 ~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      .||+|+.+.|-+|..+ |-.=++||..|.|.|-|+|--+-
T Consensus         2 ~Wtde~~~~L~~lw~~-G~SasqIA~~lg~vsRnAViGk~   40 (162)
T PF07750_consen    2 SWTDERVERLRKLWAE-GLSASQIARQLGGVSRNAVIGKA   40 (162)
T ss_pred             CCCHHHHHHHHHHHHc-CCCHHHHHHHhCCcchhhhhhhh
Confidence            5999999999999977 99999999999889999988765

These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=93.89  E-value=0.16  Score=38.07  Aligned_cols=41  Identities=24%  Similarity=0.330  Sum_probs=39.1

Q ss_pred             CCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            4 WGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         4 ~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      ..||.||--++-.++..||....+|-+.||.|+-.++...|
T Consensus       188 d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyY  228 (534)
T KOG1194|consen  188 DEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYY  228 (534)
T ss_pred             ccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHH
Confidence            57999999999999999999999999999999999999988

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=93.24  E-value=0.19  Score=40.73  Aligned_cols=47  Identities=21%  Similarity=0.331  Sum_probs=38.5

Q ss_pred             CCCCChHHHHHHHHHHHHhC-Cchhhhhhc------------CCCCCHHHHHHHHhhchhh
Q 037092            3 PWGFPDEEDRLICRLFAISG-SRWSVIGAH------------LPGRTDNETNNYYRNTKLK   50 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~------------~~gRt~~~~knrw~~~~l~   50 (76)
                      +..||.|||..|+-++.+|| .+|..|-..            |..||+..+..|. ++.++
T Consensus       926 ~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~-~~l~~  985 (1033)
T PLN03142        926 GKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRC-DTLIR  985 (1033)
T ss_pred             CCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHH-HHHHH
Confidence            44699999999999999999 779887332            2589999999999 65554

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=90.86  E-value=0.27  Score=28.44  Aligned_cols=13  Identities=23%  Similarity=0.434  Sum_probs=8.4

Q ss_pred             CCCCChHHHHHHH
Q 037092            3 PWGFPDEEDRLIC   15 (76)
Q Consensus         3 ~~~wT~eED~~L~   15 (76)
                      .|-||+|+|..|.
T Consensus        47 ~GiWT~eDD~~L~   59 (87)
T PF11626_consen   47 PGIWTPEDDEMLR   59 (87)
T ss_dssp             TT---HHHHHHHT
T ss_pred             CCCcCHHHHHHHH
Confidence            4679999999994

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1

Probab=90.62  E-value=0.86  Score=27.59  Aligned_cols=35  Identities=23%  Similarity=0.241  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            9 EEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         9 eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      +++..++.++...|-.+..||..+ |.|...|+++.
T Consensus       116 ~~~r~il~l~~~~~~~~~eIA~~l-gis~~tv~~~~  150 (161)
T TIGR02985       116 EQCRKIFILSRFEGKSYKEIAEEL-GISVKTVEYHI  150 (161)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHH
Confidence            456666677666788999999998 89999999998

This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=89.95  E-value=0.88  Score=30.52  Aligned_cols=43  Identities=14%  Similarity=0.095  Sum_probs=33.7

Q ss_pred             CCChHHHHHHHHHHHHhCCchhhhhhcC---CCCCHHHHHHHHhhchh
Q 037092            5 GFPDEEDRLICRLFAISGSRWSVIGAHL---PGRTDNETNNYYRNTKL   49 (76)
Q Consensus         5 ~wT~eED~~L~~~~~~~G~~W~~Ia~~~---~gRt~~~~knrw~~~~l   49 (76)
                      .|++++|-+|+..|.. |+.-..|+..+   -.-|-..|..|| +..|
T Consensus         1 rW~~~DDl~Li~av~~-~~~L~~v~~gvkFS~~fT~~Ei~~RW-~~ll   46 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQ-TNDLESVHLGVKFSCKFTLQEIEERW-YALL   46 (199)
T ss_pred             CCCchhhHHHHHHHHH-hcCHHHHHccCCcCCcCcHHHHHHHH-HHHH
Confidence            4999999999999877 77777766644   356889999999 6544

>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=89.72  E-value=0.93  Score=23.05  Aligned_cols=35  Identities=20%  Similarity=0.269  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            9 EEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         9 eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      +++..++.++-..|-.+..||..+ |-|...|+.+-
T Consensus         7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~   41 (50)
T PF04545_consen    7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRIL   41 (50)
T ss_dssp             HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHH
Confidence            445555556555577899999998 88999998877

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=89.63  E-value=0.78  Score=36.35  Aligned_cols=41  Identities=12%  Similarity=0.193  Sum_probs=39.2

Q ss_pred             CCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            4 WGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         4 ~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      ..||+.|-.+.-+++..|-...-.|++.++|.|..+|-..|
T Consensus       620 d~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyY  660 (907)
T KOG4167|consen  620 DKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYY  660 (907)
T ss_pred             ccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHH
Confidence            46999999999999999999999999999999999999988

>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional

Probab=88.48  E-value=1.6  Score=27.30  Aligned_cols=36  Identities=14%  Similarity=0.194  Sum_probs=31.9

Q ss_pred             hHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHH
Q 037092            8 DEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         8 ~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      ++-|..|+.+...-| ..|+.||..+ |-|...|.+|+
T Consensus         8 D~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri   44 (153)
T PRK11179          8 DNLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRV   44 (153)
T ss_pred             CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHH
Confidence            457888888888878 5799999999 99999999999

>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=88.46  E-value=0.56  Score=35.98  Aligned_cols=42  Identities=19%  Similarity=0.320  Sum_probs=40.2

Q ss_pred             CCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            3 PWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      .+.||.+|=++.-.....+|.+-+.||..+|+|+..|||..+
T Consensus       409 ~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~  450 (584)
T KOG2009|consen  409 TDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKF  450 (584)
T ss_pred             cCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHH
Confidence            478999999999999999999999999999999999999988

>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A

Probab=87.57  E-value=0.54  Score=23.76  Aligned_cols=37  Identities=24%  Similarity=0.299  Sum_probs=18.8

Q ss_pred             CCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHH
Q 037092            4 WGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNN   42 (76)
Q Consensus         4 ~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~kn   42 (76)
                      ..+|++|-..|..++. -|-.=..||..| ||+..-|.+
T Consensus         3 ~~Lt~~eR~~I~~l~~-~G~s~~~IA~~l-g~s~sTV~r   39 (44)
T PF13936_consen    3 KHLTPEERNQIEALLE-QGMSIREIAKRL-GRSRSTVSR   39 (44)
T ss_dssp             ---------HHHHHHC-S---HHHHHHHT-T--HHHHHH
T ss_pred             cchhhhHHHHHHHHHH-cCCCHHHHHHHH-CcCcHHHHH
Confidence            4678899888888865 588888999999 899887765

>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain

Probab=85.16  E-value=1.8  Score=25.02  Aligned_cols=31  Identities=23%  Similarity=0.395  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHhCCchhhhhhcCCCCCHHHHHH
Q 037092           11 DRLICRLFAISGSRWSVIGAHLPGRTDNETNN   42 (76)
Q Consensus        11 D~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~kn   42 (76)
                      |+-|..+....|..|..+|.++ |=|..+|..
T Consensus         2 ~~~L~~la~~LG~~W~~Lar~L-gls~~~I~~   32 (83)
T cd08319           2 DRELNQLAQRLGPEWEQVLLDL-GLSQTDIYR   32 (83)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence            4567888999999999999998 666665443

Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr

>PRK11169 leucine-responsive transcriptional regulator; Provisional

Probab=85.10  E-value=2.4  Score=26.88  Aligned_cols=36  Identities=17%  Similarity=0.113  Sum_probs=31.6

Q ss_pred             hHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHH
Q 037092            8 DEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         8 ~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      ++-|..|+.+...-| -.|+.||..+ |=|...|.+|+
T Consensus        13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri   49 (164)
T PRK11169         13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERV   49 (164)
T ss_pred             HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHH
Confidence            456888888888877 5699999998 99999999999

>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]

Probab=83.49  E-value=4.5  Score=31.67  Aligned_cols=58  Identities=10%  Similarity=0.205  Sum_probs=40.1

Q ss_pred             CCCCChHHHHHHHHHHHHhCCchhhhhhcC----------CCCCHHHHHHHHhhchhhhHHhhCCCCCCC
Q 037092            3 PWGFPDEEDRLICRLFAISGSRWSVIGAHL----------PGRTDNETNNYYRNTKLKRKHEEGGLKVPM   62 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~----------~gRt~~~~knrw~~~~l~~~~~~~~~~~~~   62 (76)
                      +..||-+|.+-...+..++|.....|-..+          .-.|-.|++.+| +..+.+..+-- |.+.-
T Consensus        88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~y-Y~~~~~m~k~~-F~~~l  155 (782)
T KOG4468|consen   88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYY-YRLVRRMNKLL-FGPDL  155 (782)
T ss_pred             ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHH-HHHHHHHHhhh-ccccc
Confidence            458999999999999999999998773222          234566888888 55444443333 54433

>cd08803 Death_ank3 Death domain of Ankyrin-3

Probab=83.33  E-value=2.7  Score=24.29  Aligned_cols=31  Identities=19%  Similarity=0.284  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHhCCchhhhhhcCCCCCHHHHHH
Q 037092           11 DRLICRLFAISGSRWSVIGAHLPGRTDNETNN   42 (76)
Q Consensus        11 D~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~kn   42 (76)
                      |..|..+....|..|..+|..| |=+...|.+
T Consensus         4 d~~l~~ia~~LG~dW~~LA~eL-g~s~~dI~~   34 (84)
T cd08803           4 DIRMAIVADHLGLSWTELAREL-NFSVDEINQ   34 (84)
T ss_pred             HHHHHHHHHHhhccHHHHHHHc-CCCHHHHHH
Confidence            5677888899999999999998 666655444

Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se

>PRK09643 RNA polymerase sigma factor SigM; Reviewed

Probab=83.25  E-value=3.6  Score=26.38  Aligned_cols=36  Identities=14%  Similarity=0.112  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            8 DEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         8 ~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      |+++..++.+....|-....||..+ |-|.+.|+++.
T Consensus       136 p~~~r~i~~l~~~~g~s~~EIA~~l-g~s~~tV~~rl  171 (192)
T PRK09643        136 PVEQRAALVAVDMQGYSVADAARML-GVAEGTVKSRC  171 (192)
T ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH
Confidence            3566777888888899999999999 89999999998

>smart00595 MADF subfamily of SANT domain

Probab=83.21  E-value=1.4  Score=24.76  Aligned_cols=19  Identities=21%  Similarity=0.424  Sum_probs=17.3

Q ss_pred             hhhhhhcCCCCCHHHHHHHH
Q 037092           25 WSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus        25 W~~Ia~~~~gRt~~~~knrw   44 (76)
                      |..||..|. -|...|+.+|
T Consensus        30 W~~Ia~~l~-~~~~~~~~kw   48 (89)
T smart00595       30 WEEIAEELG-LSVEECKKRW   48 (89)
T ss_pred             HHHHHHHHC-cCHHHHHHHH
Confidence            999999994 4999999999

>PRK09641 RNA polymerase sigma factor SigW; Provisional

Probab=82.96  E-value=3.6  Score=25.78  Aligned_cols=35  Identities=17%  Similarity=0.039  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            9 EEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         9 eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      +++..++.+....|.....||..+ |-|...|+++.
T Consensus       139 ~~~r~il~l~~~~~~s~~eIA~~l-gis~~~v~~~l  173 (187)
T PRK09641        139 EKYRTVIVLKYIEDLSLKEISEIL-DLPVGTVKTRI  173 (187)
T ss_pred             HHHHHHhhhHHhhCCCHHHHHHHH-CCCHHHHHHHH
Confidence            445566666666788899999998 89999999987

>COG5352 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.74  E-value=1.9  Score=27.82  Aligned_cols=37  Identities=27%  Similarity=0.333  Sum_probs=32.5

Q ss_pred             CCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHH
Q 037092            5 GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNN   42 (76)
Q Consensus         5 ~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~kn   42 (76)
                      .||+|--+.|-+|..+ |-.=|+||..+.|=|-|+|--
T Consensus         2 nWtdERve~LkKLWse-GLSASQIAaQLGGVsRnAVIG   38 (169)
T COG5352           2 NWTDERVETLKKLWSE-GLSASQIAAQLGGVSRNAVIG   38 (169)
T ss_pred             CchHHHHHHHHHHHHc-ccCHHHHHHHhcCcchhhhhe
Confidence            6999999999999888 888899999999988887654

>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B

Probab=82.12  E-value=4.3  Score=20.30  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHH
Q 037092            9 EEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         9 eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      +=|..|+.+...-| -.+..||..+ |=|...|..|+
T Consensus         3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri   38 (42)
T PF13404_consen    3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRI   38 (42)
T ss_dssp             HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHH
Confidence            55888898888888 4599999998 89999999998

...

>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family

Probab=81.73  E-value=4.4  Score=23.72  Aligned_cols=34  Identities=18%  Similarity=0.213  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092           10 EDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus        10 ED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      .+..++.++...|-.+..||..+ |=|...|+++.
T Consensus       114 ~~~~ii~~~~~~g~s~~eIA~~l-~~s~~~v~~~~  147 (158)
T TIGR02937       114 REREVLVLRYLEGLSYKEIAEIL-GISVGTVKRRL  147 (158)
T ss_pred             HHHHHHhhHHhcCCCHHHHHHHH-CCCHHHHHHHH
Confidence            34444455555688999999998 67899999987

Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.

>PRK09652 RNA polymerase sigma factor RpoE; Provisional

Probab=81.11  E-value=4.8  Score=24.81  Aligned_cols=34  Identities=21%  Similarity=0.173  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092           10 EDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus        10 ED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      ++..++.++...|-++..||..+ |-|...|+++.
T Consensus       132 ~~r~vl~l~~~~~~s~~eIA~~l-gis~~tV~~~l  165 (182)
T PRK09652        132 ELRTAITLREIEGLSYEEIAEIM-GCPIGTVRSRI  165 (182)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHH
Confidence            34445556666788999999998 89999999987

>PRK09645 RNA polymerase sigma factor SigL; Provisional

Probab=81.09  E-value=6.4  Score=24.42  Aligned_cols=35  Identities=20%  Similarity=0.156  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            9 EEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         9 eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      +++..++.++...|-.-..||..+ |-+.+.|+.+.
T Consensus       121 ~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l  155 (173)
T PRK09645        121 PEHRAVLVRSYYRGWSTAQIAADL-GIPEGTVKSRL  155 (173)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH
Confidence            445556667666788889999998 89999999987

>PRK11924 RNA polymerase sigma factor; Provisional

Probab=80.78  E-value=4.7  Score=24.76  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092           10 EDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus        10 ED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      .+..++.++...|-....||..| |-|...|+++.
T Consensus       129 ~~r~i~~l~~~~~~~~~eIA~~l-gis~~tv~~~~  162 (179)
T PRK11924        129 KQREVFLLRYVEGLSYREIAEIL-GVPVGTVKSRL  162 (179)
T ss_pred             HHHHHhhHHHHcCCCHHHHHHHH-CCCHHHHHHHH
Confidence            34455556666788899999998 89999999987

>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE

Probab=80.74  E-value=3.4  Score=25.93  Aligned_cols=35  Identities=14%  Similarity=0.114  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            9 EEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         9 eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      ++...++.+....|-....||..+ |=|.+.|+++.
T Consensus       141 ~~~r~v~~l~~~~~~s~~EIA~~l-gis~~tv~~~l  175 (190)
T TIGR02939       141 EDLRTAITLRELEGLSYEDIARIM-DCPVGTVRSRI  175 (190)
T ss_pred             HHHhhhhhhhhhcCCCHHHHHHHH-CcCHHHHHHHH
Confidence            344445555555678889999998 88899999987

A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.

>cd08317 Death_ank Death domain associated with Ankyrins

Probab=80.27  E-value=2.7  Score=23.90  Aligned_cols=31  Identities=19%  Similarity=0.461  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHhCCchhhhhhcCCCCCHHHHHH
Q 037092           11 DRLICRLFAISGSRWSVIGAHLPGRTDNETNN   42 (76)
Q Consensus        11 D~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~kn   42 (76)
                      |..|..+....|..|..+|..+ |=+...|..
T Consensus         4 ~~~l~~ia~~lG~dW~~LAr~L-g~~~~dI~~   34 (84)
T cd08317           4 DIRLADISNLLGSDWPQLAREL-GVSETDIDL   34 (84)
T ss_pred             cchHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence            4567778889999999999998 666655444

Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati

>PRK12532 RNA polymerase sigma factor; Provisional

Probab=80.17  E-value=6.3  Score=25.10  Aligned_cols=47  Identities=13%  Similarity=0.055  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHh--hchhhhHHhhCCC
Q 037092           11 DRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYR--NTKLKRKHEEGGL   58 (76)
Q Consensus        11 D~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~--~~~l~~~~~~~~~   58 (76)
                      ...++.++...|-+-..||..+ |-|.+.|+++..  ...|++.+....+
T Consensus       141 ~r~i~~L~~~~g~s~~EIA~~l-gis~~tVk~~l~Rar~~Lr~~l~~~~~  189 (195)
T PRK12532        141 TARVFTLKEILGFSSDEIQQMC-GISTSNYHTIMHRARESLRQCLQIKWF  189 (195)
T ss_pred             HHHHhhhHHHhCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4445555566677789999998 899999999872  1344455444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	76
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		9e-06
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		5e-05
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		7e-05
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		7e-05
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		7e-05
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		8e-05
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		2e-04
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		2e-04

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 5   GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
            + +EEDR+I     + G+RW+ I   LPGRTDN   N++ N+ +KRK
Sbjct: 61  SWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHW-NSTIKRK 107

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 5   GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
            + +EEDR+I +     G+RW+ I   LPGRTDN   N++ N+ ++RK
Sbjct: 81  SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHW-NSTMRRK 127

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 5   GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
            + +EEDR+I +     G+RW+ I   LPGRTDN   N++ N+ ++RK
Sbjct: 58  SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRK 104

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 5   GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
            + +EEDR+I +     G+RW+ I   LPGRTDN   N++ N+ ++RK
Sbjct: 58  SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRK 104

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 5   GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
            + +EEDR+I +     G+RW+ I   LPGRTDN   N++ N+ ++RK
Sbjct: 112 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRK 158

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 5  GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
           + +EEDR+I +     G+RW+ I   LPGRTDN   N++ N+ ++RK
Sbjct: 5  SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRK 51

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 5  GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
           + +EEDR++ +     G+RW+ I   LPGRTDN   N++ N+ ++RK
Sbjct: 7  SWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRK 53

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 9   EEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKR 51
           EED  I R +   GS+WSVI   +PGRTDN   N + ++  KR
Sbjct: 60  EEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	76
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	3e-13
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	4e-13
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	7e-13
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	7e-13
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	2e-11
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	1e-10

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score = 59.2 bits (144), Expect = 3e-13
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 6   FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGG 57
           +  EED  I R +   GS+WSVI   +PGRTDN   N + N+ + ++     
Sbjct: 57  WTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRW-NSSISKRISTNS 107

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score = 57.9 bits (141), Expect = 4e-13
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 6   FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
           + +EEDR+I +     G+RW+ I   LPGRTDN   N++ N+ ++RK
Sbjct: 59  WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRK 104

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score = 58.0 bits (141), Expect = 7e-13
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 6   FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKN 65
           +  EED L+ +     G +W++I    PGRTD    N +  T   +       ++    +
Sbjct: 65  WTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW-VTISNKLGIPQTQQMLEHHH 123

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score = 57.9 bits (141), Expect = 7e-13
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 6   FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
           + +EEDR+I +     G+RW+ I   LPGRTDN   N++ N+ ++RK
Sbjct: 82  WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHW-NSTMRRK 127

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score = 53.7 bits (130), Expect = 2e-11
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 6   FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEE 55
           +  EED L+ + +A  G +W+ I   L  R+DN   N +     + + + 
Sbjct: 56  WSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW-MMIARHRAKH 104

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 53.0 bits (128), Expect = 1e-10
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 6   FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
           + +EEDR+I +     G+RW+ I   LPGRTDN   N++ N+ ++RK
Sbjct: 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRK 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	76
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.91
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.9
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.89
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.89
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.88
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.88
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.88
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.87
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.87
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.87
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.86
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.86
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.86
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.85
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.85
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.85
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.85
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.85
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.84
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.84
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.83
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.83
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.82
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.72
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.81
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.8
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.78
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.78
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.77
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.76
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.76
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.74
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.73
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.71
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.66
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.56
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	99.41
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	99.37
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	99.37
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	99.16
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	99.09
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.82
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.81
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.78
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	98.23
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.7
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	98.65
2crg_A	70	Metastasis associated protein MTA3; transcription	98.57
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.57
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	98.18
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.96
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	96.88
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	96.74
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	96.67
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	96.66
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	96.59
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.57
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	95.95
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	95.55
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	95.14
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	95.12
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	91.28
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	88.99
2o8x_A	70	Probable RNA polymerase sigma-C factor; promoter r	88.59
1ku3_A	73	Sigma factor SIGA; helix-turn-helix, transcription	85.79
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	83.36
2p7v_B	68	Sigma-70, RNA polymerase sigma factor RPOD; RSD, r	82.87
3hug_A	92	RNA polymerase sigma factor; ECF sigma factor, zin	82.31
2rq5_A	121	Protein jumonji; developmental protein, nucleus, r	80.17

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.91  E-value=1e-24  Score=122.48  Aligned_cols=62  Identities=16%  Similarity=0.205  Sum_probs=59.5

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCc
Q 037092            1 MKPWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMK   63 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~   63 (76)
                      +++|+||+|||++|+++|.+|| ++|+.||..|||||+.||++|| ..+|.+.+.+.+|++.++
T Consensus         7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw-~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARW-YEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHH-HHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHH-HHHcCCcccCCCCChHhc
Confidence            5789999999999999999999 7999999999999999999999 999999999999999875

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.90  E-value=5.9e-24  Score=120.04  Aligned_cols=61  Identities=25%  Similarity=0.262  Sum_probs=55.1

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCc
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMK   63 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~   63 (76)
                      +++++||+|||++|+++|.+||++|+.||.+|||||++||++|| +.++++.+.. +.++..+
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~-~~~l~~~~~~-g~~~~~~   67 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYA-RQYFKNKVKC-GLDKETP   67 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHH-HHHHHHHSCS-CTTCCCS
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHH-HHHHHHHHhc-CCCCCcc
Confidence            57999999999999999999999999999999999999999999 9999888776 5555443

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.89  E-value=1.4e-23  Score=111.74  Aligned_cols=50  Identities=28%  Similarity=0.492  Sum_probs=46.1

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHhhchhhh
Q 037092            1 MKPWGFPDEEDRLICRLFAISGS-RWSVIGAHLPGRTDNETNNYYRNTKLKR   51 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~~~gRt~~~~knrw~~~~l~~   51 (76)
                      |++++||+|||++|+++|.+||. +|+.||..|||||++||++|| +.+|.+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW-QKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHH-HHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHH-HHHcCc
Confidence            68999999999999999999997 999999999999999999999 888765

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.89  E-value=2.2e-23  Score=111.03  Aligned_cols=50  Identities=30%  Similarity=0.545  Sum_probs=47.4

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHhhchhhh
Q 037092            1 MKPWGFPDEEDRLICRLFAISGS-RWSVIGAHLPGRTDNETNNYYRNTKLKR   51 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~~~gRt~~~~knrw~~~~l~~   51 (76)
                      |++|+||+|||++|+++|.+||. +|+.||..|||||++||++|| ..+|.+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW-HNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHH-HHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHH-HHHcCc
Confidence            68999999999999999999997 699999999999999999999 888865

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.88  E-value=3.1e-23  Score=123.65  Aligned_cols=74  Identities=22%  Similarity=0.373  Sum_probs=70.0

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhhc
Q 037092            1 MKPWGFPDEEDRLICRLFAISGS-RWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKN   75 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (76)
                      |++|+||+|||++|+++|..||. +|..||..|||||+.||+.|| ..+|.+.+..++|+++++..+...+..+++
T Consensus         2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw-~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~   76 (105)
T 1gv2_A            2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW-HNHLNPEVKKTSWTEEEDRIIYQAHKRLGN   76 (105)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHH-HHTTCCCCCCCCCCHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHH-HhccCCcccccCCCHHHHHHHHHHHHHhCC
Confidence            68999999999999999999996 699999999999999999999 999999999999999999999998887764

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.88  E-value=3.1e-23  Score=113.25  Aligned_cols=52  Identities=23%  Similarity=0.392  Sum_probs=48.9

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhchhhhHH
Q 037092            1 MKPWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNTKLKRKH   53 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~   53 (76)
                      +++++||+|||++|+++|.+|| ++|+.||.+|||||+.||++|| +.+|.+.+
T Consensus         6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~l~p~i   58 (60)
T 2d9a_A            6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW-LRVLSGPS   58 (60)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHH-HHTSCSSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHH-HHHcCCcc
Confidence            5799999999999999999999 6999999999999999999999 98888764

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=8.2e-23  Score=113.50  Aligned_cols=56  Identities=20%  Similarity=0.302  Sum_probs=52.8

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCC
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGL   58 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~   58 (76)
                      |++++||+|||++|+++|..||++|+.||. |+|||++||++|| +.+|.+.+.+..-
T Consensus         7 ~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw-~~~l~~~~~~~~~   62 (66)
T 2din_A            7 GKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHY-EFLLDKAAQRDSG   62 (66)
T ss_dssp             SSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHH-HHHHHHHHHSSSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHH-HHHhChHhcCCCC
Confidence            579999999999999999999999999999 8999999999999 9999999887754

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.87  E-value=9.5e-23  Score=125.34  Aligned_cols=74  Identities=22%  Similarity=0.323  Sum_probs=70.2

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhhc
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKN   75 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (76)
                      +++|+||+|||++|+++|..||.+|..||..|||||+.||+.|| ..+|.+.+.+++|+++++..+...+..+++
T Consensus         9 ~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw-~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            9 AKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRW-KNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHH-HHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH-hhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            47899999999999999999999999999999999999999999 999999999999999999999999887764

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.87  E-value=1.5e-22  Score=124.51  Aligned_cols=74  Identities=19%  Similarity=0.321  Sum_probs=69.7

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhhc
Q 037092            1 MKPWGFPDEEDRLICRLFAISGS-RWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKN   75 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (76)
                      +++|+||+|||++|+++|.+||. +|+.||..|||||+.||++|| ..+|.+.+.+++|+++++..+...+..+++
T Consensus        25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw-~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~   99 (128)
T 1h8a_C           25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERW-HNHLNPEVKKTSWTEEEDRIIYQAHKRLGN   99 (128)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHH-HHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHH-HHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            57899999999999999999995 699999999999999999999 999999999999999999999999887764

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.87  E-value=3.8e-22  Score=106.66  Aligned_cols=49  Identities=27%  Similarity=0.228  Sum_probs=45.6

Q ss_pred             CCCCCChHHHHHHHHHHHHhC-CchhhhhhcCC--CCCHHHHHHHHhhchhhh
Q 037092            2 KPWGFPDEEDRLICRLFAISG-SRWSVIGAHLP--GRTDNETNNYYRNTKLKR   51 (76)
Q Consensus         2 ~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~--gRt~~~~knrw~~~~l~~   51 (76)
                      ++++||+|||++|+++|.+|| ++|+.||..||  |||+.||++|| .++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw-~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW-RTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHH-HHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHH-HHHHcc
Confidence            589999999999999999999 69999999999  99999999999 777653

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.86  E-value=2.7e-22  Score=120.27  Aligned_cols=72  Identities=15%  Similarity=0.177  Sum_probs=68.0

Q ss_pred             CCCCChHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhhc
Q 037092            3 PWGFPDEEDRLICRLFAISGS-RWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKN   75 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (76)
                      +|+||+|||++|+++|..||. +|..||..|||||+.||+.|| ..+|.+.+..++|+++++..+...+..+++
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~   73 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERW-NNYINPALRTDPWSPEEDMLLDQKYAEYGP   73 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHH-HHHSSSCCTTCCCCHHHHHHHHHHHHHTCS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHH-HHHHcccccccccCHHHHHHHHHHHHHhCc
Confidence            689999999999999999995 899999999999999999999 999999999999999999999998887764

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.86  E-value=4.5e-22  Score=111.41  Aligned_cols=56  Identities=25%  Similarity=0.184  Sum_probs=52.0

Q ss_pred             CCCCCChHHHHHHHHHHHHhC-CchhhhhhcCC--CCCHHHHHHHHhhchhhhHHhhCCC
Q 037092            2 KPWGFPDEEDRLICRLFAISG-SRWSVIGAHLP--GRTDNETNNYYRNTKLKRKHEEGGL   58 (76)
Q Consensus         2 ~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~--gRt~~~~knrw~~~~l~~~~~~~~~   58 (76)
                      ++++||+|||++|+++|.+|| ++|+.||..||  |||+.||++|| ..+|++.+.+...
T Consensus         9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw-~~~l~p~i~k~~~   67 (69)
T 1ity_A            9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW-RTMKKLKLISSDS   67 (69)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHH-HHHHHTSCCCCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHH-HHHcCCCCCCCCC
Confidence            689999999999999999999 69999999999  99999999999 9999998776644

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.86  E-value=1.7e-22  Score=114.73  Aligned_cols=45  Identities=24%  Similarity=0.355  Sum_probs=43.1

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhc
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNT   47 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~   47 (76)
                      |++|+||+|||++|+++|.+||++|+.||+.| |||+++||||| +.
T Consensus        21 i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw-~~   65 (73)
T 2llk_A           21 NHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRC-RL   65 (73)
T ss_dssp             CCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHH-HH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHH-HH
Confidence            68999999999999999999999999999999 99999999999 53

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.85  E-value=6.8e-22  Score=122.12  Aligned_cols=72  Identities=18%  Similarity=0.281  Sum_probs=68.2

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhhc
Q 037092            3 PWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKN   75 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (76)
                      +|+||+|||++|+++|..|| .+|..||..|||||+.||+.|| ..+|.+.+.+++|+++++..+...+..+++
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~   74 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERW-FNHLDPAVVKHAWTPEEDETIFRNYLKLGS   74 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHH-HHHTSTTCCCSCCCHHHHHHHHHHHHHSCS
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHH-hhccCccccCCCCCHHHHHHHHHHHHHHCc
Confidence            79999999999999999999 6799999999999999999999 999999999999999999999988887764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.85  E-value=1e-21  Score=107.39  Aligned_cols=50  Identities=12%  Similarity=0.220  Sum_probs=46.6

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhchhhh
Q 037092            1 MKPWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNTKLKR   51 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~~l~~   51 (76)
                      |.+++||+|||++|+++|..|| ++|..||.+|||||+.||++|| ..+|.+
T Consensus         6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~-~~~l~~   56 (60)
T 1x41_A            6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHY-MKYFSG   56 (60)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHH-HHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHH-HHHccC
Confidence            5789999999999999999999 7999999999999999999999 777653

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.85  E-value=1.1e-21  Score=124.18  Aligned_cols=74  Identities=22%  Similarity=0.373  Sum_probs=69.6

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhhc
Q 037092            1 MKPWGFPDEEDRLICRLFAISGS-RWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKN   75 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (76)
                      |++|+||+|||++|+++|..||. +|+.||..|||||++||++|| ..+|.+.+...+|+++++..+...+..+++
T Consensus        56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw-~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~  130 (159)
T 1h89_C           56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW-HNHLNPEVKKTSWTEEEDRIIYQAHKRLGN  130 (159)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHH-HHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHH-HHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence            57899999999999999999996 699999999999999999999 999999999999999999999998887764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.85  E-value=1.7e-21  Score=120.30  Aligned_cols=60  Identities=32%  Similarity=0.545  Sum_probs=55.3

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCC
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVP   61 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~   61 (76)
                      |++|+||+|||++|+++|.+||++|+.||.+|||||+++|++|| ++++++.+....++..
T Consensus        52 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw-~~~l~~~~~~~~~~~~  111 (131)
T 3zqc_A           52 VVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRW-NSSISKRISTNSNHKE  111 (131)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHH-HHTTGGGCCCCTTSCC
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHH-HHHHHHHhhcCCCccc
Confidence            57899999999999999999999999999999999999999999 9999999887765443

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.85  E-value=1.9e-21  Score=115.93  Aligned_cols=52  Identities=40%  Similarity=0.706  Sum_probs=47.1

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHH
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKH   53 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~   53 (76)
                      |++|+||+|||++|+++|.+||++|+.||.+|||||+++|+||| +.++++++
T Consensus        54 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw-~~~~~~~~  105 (105)
T 1gv2_A           54 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRKV  105 (105)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHH-HHHTC---
T ss_pred             ccccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH-HHHHhccC
Confidence            57899999999999999999999999999999999999999999 88887653

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.84  E-value=3.3e-21  Score=115.50  Aligned_cols=54  Identities=24%  Similarity=0.440  Sum_probs=49.4

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHhh
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEE   55 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~   55 (76)
                      |++|+||+|||.+|+++|.+||++|+.||.+|||||+++|++|| +.++++....
T Consensus        51 i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw-~~l~r~~~~~  104 (107)
T 2k9n_A           51 LRTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW-MMIARHRAKH  104 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHH-HHHHHHHHSS
T ss_pred             ccccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHH-HHHHhhHHHh
Confidence            57899999999999999999999999999999999999999999 8777765443

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=3.1e-21  Score=109.35  Aligned_cols=59  Identities=17%  Similarity=0.165  Sum_probs=53.1

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC------CchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCC
Q 037092            1 MKPWGFPDEEDRLICRLFAISG------SRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKV   60 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G------~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~   60 (76)
                      +++++||+|||++|++++..||      .+|..||.+|||||++||++|| +.+|.+.++.+...|
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~-~~~l~~~~k~g~~~p   70 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQV-QKYFIKLTKAGIPVS   70 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHH-HHHHGGGSTTCSCCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHH-HHHHHHHHhcCCCCC
Confidence            5789999999999999999999      6899999999999999999999 999988876654433

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.83  E-value=5e-21  Score=106.13  Aligned_cols=50  Identities=20%  Similarity=0.270  Sum_probs=45.6

Q ss_pred             CCCCCChHHHHHHHHHHHHhC-CchhhhhhcCC--CCCHHHHHHHHhhchhhhH
Q 037092            2 KPWGFPDEEDRLICRLFAISG-SRWSVIGAHLP--GRTDNETNNYYRNTKLKRK   52 (76)
Q Consensus         2 ~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~--gRt~~~~knrw~~~~l~~~   52 (76)
                      ++++||+|||++|+++|.+|| .+|+.||..+|  |||+.||++|| .+++++.
T Consensus        10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw-~nl~k~g   62 (64)
T 3sjm_A           10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW-RTMKRLG   62 (64)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHH-HHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHH-HHHhccC
Confidence            689999999999999999999 58999999866  99999999999 7777654

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.83  E-value=9e-21  Score=116.51  Aligned_cols=52  Identities=40%  Similarity=0.710  Sum_probs=47.9

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHH
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKH   53 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~   53 (76)
                      |++|+||+|||++|+++|.+||++|+.||.+|||||+++|+||| +.++++++
T Consensus        77 ~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~-~~~~~~~~  128 (128)
T 1h8a_C           77 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHW-NSTMRRKV  128 (128)
T ss_dssp             SCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHH-HTTTTC--
T ss_pred             cccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHH-HHHHhccC
Confidence            57899999999999999999999999999999999999999999 88887653

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.82  E-value=1.3e-20  Score=102.54  Aligned_cols=47  Identities=19%  Similarity=0.266  Sum_probs=43.8

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CchhhhhhcCC-CCCHHHHHHHHhhch
Q 037092            1 MKPWGFPDEEDRLICRLFAISG-SRWSVIGAHLP-GRTDNETNNYYRNTK   48 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~-gRt~~~~knrw~~~~   48 (76)
                      |.+++||+|||++|+++|.+|| ++|..||.+|| |||+.||++|| ..+
T Consensus         7 ~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~-~~~   55 (58)
T 2elk_A            7 GFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHY-LKT   55 (58)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHH-HHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHH-HHH
Confidence            4688999999999999999999 89999999999 99999999999 544

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.72  E-value=5.3e-22  Score=116.16  Aligned_cols=53  Identities=23%  Similarity=0.322  Sum_probs=48.9

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHh
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHE   54 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~   54 (76)
                      |++|+||+|||++|+++|..||++|+.||.+|||||++||++|| +.++++...
T Consensus        14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~-~~~lrk~~l   66 (89)
T 2ltp_A           14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFY-FNYKKRQNL   66 (89)
Confidence            57899999999999999999999999999999999999999999 888776533

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.81  E-value=4.9e-20  Score=113.20  Aligned_cols=51  Identities=27%  Similarity=0.480  Sum_probs=46.9

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhH
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK   52 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~   52 (76)
                      +++|+||+|||++|+++|.+||++|+.||..|||||+++|++|| +.++++.
T Consensus        60 ~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw-~~l~~k~  110 (126)
T 3osg_A           60 ISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW-VTISNKL  110 (126)
T ss_dssp             SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHH-HHHHHHT
T ss_pred             cccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHH-HHHHHhc
Confidence            57899999999999999999999999999999999999999999 6655543

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.80  E-value=9.1e-20  Score=115.39  Aligned_cols=52  Identities=40%  Similarity=0.706  Sum_probs=47.8

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHH
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKH   53 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~   53 (76)
                      |++++||+|||.+|++++.+||++|+.||++|||||+++|+||| +.++++++
T Consensus       108 ~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~-~~~~r~~~  159 (159)
T 1h89_C          108 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRKV  159 (159)
T ss_dssp             SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHH-HTTTCC--
T ss_pred             ccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHH-HHHHhccC
Confidence            57899999999999999999999999999999999999999999 88887653

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.78  E-value=1.3e-19  Score=111.32  Aligned_cols=74  Identities=12%  Similarity=0.138  Sum_probs=56.1

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCC-chhhhhhc----CCCCCHHHHHHHHhhchhh-----hHHhhC-CCCCCCchhHHHH
Q 037092            1 MKPWGFPDEEDRLICRLFAISGS-RWSVIGAH----LPGRTDNETNNYYRNTKLK-----RKHEEG-GLKVPMKKNLERD   69 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~----~~gRt~~~~knrw~~~~l~-----~~~~~~-~~~~~~~~~~~~~   69 (76)
                      .++++||+|||+.|+++|.+||. +|+.|+..    |+|||+++||+|| .++++     +.++.+ ++++.+...+..+
T Consensus        15 r~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRW-rnllk~~~~~p~~krg~~~p~e~~~rv~~~   93 (121)
T 2juh_A           15 RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKW-KTLVHTASIAPQQRRGEPVPQDLLDRVLAA   93 (121)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHH-HHHHHHHHTCSTTCCCSCCCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHH-HHHHhhhccCCcccCCCCCCHHHHHHHHHH
Confidence            36899999999999999999996 99999997    5999999999999 88887     554443 2222222334455


Q ss_pred             HHHhhc
Q 037092           70 LRIVKN   75 (76)
Q Consensus        70 ~~~~~~   75 (76)
                      ...++|
T Consensus        94 h~~~gn   99 (121)
T 2juh_A           94 HAYWSQ   99 (121)
T ss_dssp             HHHHHH
T ss_pred             HHHHcc
Confidence            555544

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.78  E-value=1.3e-19  Score=121.63  Aligned_cols=53  Identities=25%  Similarity=0.400  Sum_probs=49.1

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCc------hhhhhhcCCCCCHHHHHHHHhhchhhhHHh
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSR------WSVIGAHLPGRTDNETNNYYRNTKLKRKHE   54 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~------W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~   54 (76)
                      +++++||+|||++|+++|.++|++      |+.||++|||||++|||+|| +.+|++.+.
T Consensus         6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw-~~~L~~~ln   64 (246)
T 1ign_A            6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRF-RVYLSKRLE   64 (246)
T ss_dssp             --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHH-HHTTGGGCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHH-HHHHhhhcc
Confidence            468999999999999999999975      99999999999999999999 999999986

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.77  E-value=5.3e-19  Score=108.67  Aligned_cols=74  Identities=14%  Similarity=0.123  Sum_probs=60.6

Q ss_pred             CCCCCChHHHHHHHHHHHHhCC-chhhhhhc----CCCCCHHHHHHHHhhchh-----hhHHhhCCCCCCC-chhHHHHH
Q 037092            2 KPWGFPDEEDRLICRLFAISGS-RWSVIGAH----LPGRTDNETNNYYRNTKL-----KRKHEEGGLKVPM-KKNLERDL   70 (76)
Q Consensus         2 ~~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~----~~gRt~~~~knrw~~~~l-----~~~~~~~~~~~~~-~~~~~~~~   70 (76)
                      ++++||+|||+.|+++|.+||. +|+.|+..    |+|||+.+||+|| .+++     .+.++.+.+.|++ ...+..+.
T Consensus        30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRW-rnllk~~~~~p~~kr~~~~p~e~~~~v~~~h  108 (122)
T 2roh_A           30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKW-KTLVHTASIAPQQRRGAPVPQELLDRVLAAQ  108 (122)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHH-HHHHHHHHSCTTTCCCSSCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHH-HHHHhhccCCccccCCCCCCHHHHHHHHHHH
Confidence            5899999999999999999996 99999986    4999999999999 8877     4566666555555 35566777


Q ss_pred             HHhhcC
Q 037092           71 RIVKNH   76 (76)
Q Consensus        71 ~~~~~h   76 (76)
                      ..++||
T Consensus       109 ~~~g~~  114 (122)
T 2roh_A          109 AYWSVD  114 (122)
T ss_dssp             HHHHSS
T ss_pred             HHHhhH
Confidence            777775

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.76  E-value=1.7e-18  Score=100.25  Aligned_cols=46  Identities=17%  Similarity=0.246  Sum_probs=42.7

Q ss_pred             CCCChHHHHHHHHHHHHhCC-chhhhhhc----CCCCCHHHHHHHHhhchhh
Q 037092            4 WGFPDEEDRLICRLFAISGS-RWSVIGAH----LPGRTDNETNNYYRNTKLK   50 (76)
Q Consensus         4 ~~wT~eED~~L~~~~~~~G~-~W~~Ia~~----~~gRt~~~~knrw~~~~l~   50 (76)
                      ++||+|||+.|+++|.+||. +|+.|+..    |+|||+++||+|| .++++
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrW-rnllk   51 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKW-KTLVH   51 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHH-HHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHH-HHHHH
Confidence            48999999999999999996 99999995    8999999999999 77775

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.76  E-value=1e-18  Score=99.05  Aligned_cols=47  Identities=11%  Similarity=0.223  Sum_probs=43.4

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC----CchhhhhhcCCCCCHHHHHHHHhhch
Q 037092            1 MKPWGFPDEEDRLICRLFAISG----SRWSVIGAHLPGRTDNETNNYYRNTK   48 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G----~~W~~Ia~~~~gRt~~~~knrw~~~~   48 (76)
                      +.+++||+|||.+|+.++..||    .+|..||.+|||||+++|++|| +.+
T Consensus        16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry-~~L   66 (73)
T 2cqr_A           16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY-KLL   66 (73)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHH-HHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHH-HHH
Confidence            3678999999999999999999    6899999999999999999999 543

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.74  E-value=2.6e-18  Score=98.63  Aligned_cols=46  Identities=15%  Similarity=0.291  Sum_probs=43.3

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhch
Q 037092            2 KPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTK   48 (76)
Q Consensus         2 ~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~   48 (76)
                      .+++||+|||++|++++.+||.+|..||.+|+|||+.||++|| ..+
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~-~~~   62 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF-LRL   62 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHH-TTS
T ss_pred             cCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH-HHh
Confidence            4789999999999999999999999999999999999999999 544

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.73  E-value=1e-17  Score=100.72  Aligned_cols=49  Identities=16%  Similarity=0.191  Sum_probs=44.7

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCC-chhhhhhcC----CCCCHHHHHHHHhhchhh
Q 037092            1 MKPWGFPDEEDRLICRLFAISGS-RWSVIGAHL----PGRTDNETNNYYRNTKLK   50 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~~----~gRt~~~~knrw~~~~l~   50 (76)
                      .++++||+|||+.|+++|.+||. +|+.|+..+    +|||+++||+|| .++++
T Consensus        11 r~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrW-rnllk   64 (105)
T 2aje_A           11 RIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKW-KTLVH   64 (105)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHH-HHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHH-HHHHh
Confidence            36899999999999999999996 999999965    899999999999 77774

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.71  E-value=1.8e-17  Score=91.10  Aligned_cols=48  Identities=19%  Similarity=0.286  Sum_probs=43.4

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCchhhhh---hcCCCCCHHHHHHHHhhchhh
Q 037092            2 KPWGFPDEEDRLICRLFAISGSRWSVIG---AHLPGRTDNETNNYYRNTKLK   50 (76)
Q Consensus         2 ~~~~wT~eED~~L~~~~~~~G~~W~~Ia---~~~~gRt~~~~knrw~~~~l~   50 (76)
                      ++.+||+|||+.|+++|.+||.+|+.|+   .+++|||+.+++++| ..+.+
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~-r~L~k   57 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKY-HRLIS   57 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHH-HHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHH-HHHHh
Confidence            4789999999999999999999999999   578999999999999 55443

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.66  E-value=1.4e-16  Score=93.84  Aligned_cols=48  Identities=21%  Similarity=0.432  Sum_probs=43.7

Q ss_pred             CCCCChHHHHHHHHHHHHhC----CchhhhhhcCCCCCHHHHHHHHhhchhhh
Q 037092            3 PWGFPDEEDRLICRLFAISG----SRWSVIGAHLPGRTDNETNNYYRNTKLKR   51 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G----~~W~~Ia~~~~gRt~~~~knrw~~~~l~~   51 (76)
                      +++||+|||.+|++++..||    .+|..||..|||||+++|++|| +.++..
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry-~~l~~d   59 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVED   59 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHH-HHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHH-HHHHHH
Confidence            57999999999999999996    6799999999999999999999 766544

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=8.4e-15  Score=80.08  Aligned_cols=42  Identities=17%  Similarity=0.241  Sum_probs=40.9

Q ss_pred             CCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            3 PWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      .++||+||++++++++..||.+|..||.+|||||..+|.++|
T Consensus        12 ~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Y   53 (61)
T 2eqr_A           12 MNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYY   53 (61)
T ss_dssp             CCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH
Confidence            479999999999999999999999999999999999999999

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.41  E-value=3.1e-13  Score=76.18  Aligned_cols=48  Identities=17%  Similarity=0.231  Sum_probs=42.4

Q ss_pred             CCCCCChHHHHHHHHHHHHhC----CchhhhhhcCCCCCHHHHHHHHhhchhhh
Q 037092            2 KPWGFPDEEDRLICRLFAISG----SRWSVIGAHLPGRTDNETNNYYRNTKLKR   51 (76)
Q Consensus         2 ~~~~wT~eED~~L~~~~~~~G----~~W~~Ia~~~~gRt~~~~knrw~~~~l~~   51 (76)
                      +.++||.|||++|.+++..|+    .+|..||.++ |||..+|++|| ..+...
T Consensus         7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y-~~L~~d   58 (72)
T 2cqq_A            7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKA-KQLKDS   58 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHH-HHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHH-HHHHHh
Confidence            468999999999999999997    5799999998 99999999999 655443

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=99.37  E-value=1.5e-12  Score=76.54  Aligned_cols=56  Identities=13%  Similarity=0.100  Sum_probs=49.1

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhhcC-----CCCCHHHHHHHHhhchhhhHHhhCC
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHL-----PGRTDNETNNYYRNTKLKRKHEEGG   57 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~-----~gRt~~~~knrw~~~~l~~~~~~~~   57 (76)
                      |..++||.||+..|++|+.+||.+|..|+..+     ++||..++|+|| ....++.+...+
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~Ry-Y~v~~~l~~~r~   88 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERY-YHICAKLANVRA   88 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHH-HHHHHHHHHHTC
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHH-HHHHHHHHHhcC
Confidence            34579999999999999999999999999999     589999999999 777776666553

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=99.37  E-value=6.1e-13  Score=88.78  Aligned_cols=48  Identities=15%  Similarity=0.243  Sum_probs=44.3

Q ss_pred             CCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhh
Q 037092            3 PWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKR   51 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~   51 (76)
                      .++||+||+.++++++..||.+|..||..+++||.+||+++| +.+.++
T Consensus       133 s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY-~~~kKR  180 (235)
T 2iw5_B          133 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF-VNYRRR  180 (235)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHH-HHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHH-HHHHHH
Confidence            579999999999999999999999999999999999999999 665544

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=99.16  E-value=5.7e-11  Score=64.51  Aligned_cols=46  Identities=20%  Similarity=0.340  Sum_probs=41.1

Q ss_pred             CCCCChHHHHHHHHHHHHh--------CCc-hhhhhh-cCCCCCHHHHHHHHhhchh
Q 037092            3 PWGFPDEEDRLICRLFAIS--------GSR-WSVIGA-HLPGRTDNETNNYYRNTKL   49 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~--------G~~-W~~Ia~-~~~gRt~~~~knrw~~~~l   49 (76)
                      +.+||+|||.+|++.|.++        |++ |..++. .+|++|-.++++|| ..+|
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy-~k~l   57 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRY-LKHL   57 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHH-HHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHH-HHHc
Confidence            5699999999999999999        654 999999 89999999999999 5444

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.09  E-value=1.5e-10  Score=65.35  Aligned_cols=45  Identities=20%  Similarity=0.257  Sum_probs=40.7

Q ss_pred             CCCCChHHHHHHHHHHHHhCC----chhhhhhcCCCCCHHHHHHHHhhch
Q 037092            3 PWGFPDEEDRLICRLFAISGS----RWSVIGAHLPGRTDNETNNYYRNTK   48 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~----~W~~Ia~~~~gRt~~~~knrw~~~~   48 (76)
                      .++||.||+.+|..+...|+.    +|..||..+||||..+|+.|| ..+
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY-~~l   56 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKY-MEN   56 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHH-HHS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHH-HHH
Confidence            468999999999999999983    699999999999999999999 544

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.82  E-value=1.1e-08  Score=59.71  Aligned_cols=45  Identities=24%  Similarity=0.401  Sum_probs=40.7

Q ss_pred             CCChHHHHHHHHHHHHhCC---chhhhhhcCCCCCHHHHHHHHhhchhh
Q 037092            5 GFPDEEDRLICRLFAISGS---RWSVIGAHLPGRTDNETNNYYRNTKLK   50 (76)
Q Consensus         5 ~wT~eED~~L~~~~~~~G~---~W~~Ia~~~~gRt~~~~knrw~~~~l~   50 (76)
                      -||.|||..||..+.+-|.   .|+.||..|.+|+.+||++|| +.+++
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RF-q~Lm~   82 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF-RELMQ   82 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHH-HHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHH-HHHHH
Confidence            5999999999999999996   799999999999999999999 55443

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.81  E-value=1.1e-09  Score=61.64  Aligned_cols=41  Identities=20%  Similarity=0.349  Sum_probs=38.2

Q ss_pred             CCCChHHHHHHHHHHHHhCC----chhhhhhcCCCCCHHHHHHHH
Q 037092            4 WGFPDEEDRLICRLFAISGS----RWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         4 ~~wT~eED~~L~~~~~~~G~----~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      ++||.||++++..+...|+.    +|.+||..+||||..+|+.+|
T Consensus        21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY   65 (74)
T 4eef_G           21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY   65 (74)
T ss_dssp             -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence            58999999999999999984    699999999999999999998

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=2.3e-08  Score=54.59  Aligned_cols=43  Identities=16%  Similarity=0.261  Sum_probs=40.6

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCchhhhhh-cCCCCCHHHHHHHH
Q 037092            2 KPWGFPDEEDRLICRLFAISGSRWSVIGA-HLPGRTDNETNNYY   44 (76)
Q Consensus         2 ~~~~wT~eED~~L~~~~~~~G~~W~~Ia~-~~~gRt~~~~knrw   44 (76)
                      ...+||+||-.+..+.+.+||..|..|+. .+|+||..+|...|
T Consensus         8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY   51 (63)
T 2yqk_A            8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFY   51 (63)
T ss_dssp             CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHH
Confidence            46799999999999999999999999999 69999999999988

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=98.23  E-value=9.4e-10  Score=61.11  Aligned_cols=42  Identities=17%  Similarity=0.323  Sum_probs=38.8

Q ss_pred             CCChHHHHHHHHHHHHhCC---chhhhhhcCCCCCHHHHHHHHhhch
Q 037092            5 GFPDEEDRLICRLFAISGS---RWSVIGAHLPGRTDNETNNYYRNTK   48 (76)
Q Consensus         5 ~wT~eED~~L~~~~~~~G~---~W~~Ia~~~~gRt~~~~knrw~~~~   48 (76)
                      .||.|||..|+..+.+-|.   .|..||..+ +||++||++|| ..+
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF-~~L   60 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERF-QQL   60 (70)
Confidence            5999999999999999997   799999999 99999999999 543

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=98.70  E-value=6e-08  Score=56.84  Aligned_cols=55  Identities=13%  Similarity=0.099  Sum_probs=47.3

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCC-----CCCHHHHHHHHhhchhhhHHhhC
Q 037092            1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLP-----GRTDNETNNYYRNTKLKRKHEEG   56 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~-----gRt~~~~knrw~~~~l~~~~~~~   56 (76)
                      |+...||.||-..|++|+..|+-+|..|+..+.     +||..++|+|| +...++.+...
T Consensus        28 L~~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RY-Y~V~~~l~~~r   87 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERY-YHICAKLANVR   87 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHH-HHHHHHHHHHT
T ss_pred             hCCCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHH-HHHHHHHHHhh
Confidence            345789999999999999999999999999874     79999999999 77666665544

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=98.65  E-value=6.7e-08  Score=56.59  Aligned_cols=41  Identities=20%  Similarity=0.277  Sum_probs=39.8

Q ss_pred             CCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            4 WGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         4 ~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      ..||+||..+..+.+..||.+|..||..+|+||..+|-..|
T Consensus        44 ~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~Y   84 (94)
T 4a69_C           44 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY   84 (94)
T ss_dssp             CCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHH
Confidence            58999999999999999999999999999999999999988

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.57  E-value=1.5e-07  Score=52.33  Aligned_cols=42  Identities=19%  Similarity=0.232  Sum_probs=39.8

Q ss_pred             CCCCChHHHHHHHHHHHHhCCchhhhhh-cCCCCCHHHHHHHH
Q 037092            3 PWGFPDEEDRLICRLFAISGSRWSVIGA-HLPGRTDNETNNYY   44 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~W~~Ia~-~~~gRt~~~~knrw   44 (76)
                      ..+||+||-.+..+.+..||..|..|+. .+|+||..+|...|
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY   50 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY   50 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHH
Confidence            3589999999999999999999999999 69999999999998

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.57  E-value=7.4e-08  Score=70.00  Aligned_cols=42  Identities=14%  Similarity=0.266  Sum_probs=40.7

Q ss_pred             CCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            3 PWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      ...||+||-+++++++.+||..|..||..++.||..||+++|
T Consensus       380 ~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy  421 (482)
T 2xag_B          380 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF  421 (482)
T ss_dssp             CSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHH
Confidence            478999999999999999999999999999999999999998

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=98.18  E-value=2.9e-06  Score=57.07  Aligned_cols=27  Identities=11%  Similarity=0.121  Sum_probs=23.6

Q ss_pred             chhhhhhcCCCCCHHHHHHHHhhchhhh
Q 037092           24 RWSVIGAHLPGRTDNETNNYYRNTKLKR   51 (76)
Q Consensus        24 ~W~~Ia~~~~gRt~~~~knrw~~~~l~~   51 (76)
                      .|+.||..+|+||++++|+|| ...++.
T Consensus       173 ~fk~ia~~~P~HT~~SWRdRy-rKfl~~  199 (246)
T 1ign_A          173 FFKHFAEEHAAHTENAWRDRF-RKFLLA  199 (246)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHH-HHTHHH
T ss_pred             HHHHHHHHCCCCChhhHHHHH-HHHHhh
Confidence            699999999999999999999 655543

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.96  E-value=5.4e-06  Score=47.19  Aligned_cols=51  Identities=12%  Similarity=0.253  Sum_probs=39.9

Q ss_pred             CCCCCChHHHHHHHHHHHHhCC----------chhhhhhcCC----CCCHHHHHHHHhhchhhhHHh
Q 037092            2 KPWGFPDEEDRLICRLFAISGS----------RWSVIGAHLP----GRTDNETNNYYRNTKLKRKHE   54 (76)
Q Consensus         2 ~~~~wT~eED~~L~~~~~~~G~----------~W~~Ia~~~~----gRt~~~~knrw~~~~l~~~~~   54 (76)
                      +...||++|-..||+++..+-.          .|..||..|.    .||+.||+++| .+ |.+..+
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~-~n-L~k~Yk   67 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKW-RN-LLKEFK   67 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHH-HH-HHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHH-HH-HHHHHH
Confidence            3578999999999999986321          4999999873    79999999999 54 444443

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=96.88  E-value=0.0024  Score=44.07  Aligned_cols=45  Identities=13%  Similarity=0.133  Sum_probs=40.0

Q ss_pred             CCCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhchh
Q 037092            4 WGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNTKL   49 (76)
Q Consensus         4 ~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~~l   49 (76)
                      +.||..+....+.++.+|| ..|..||..|+|.|...|+.++ ....
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~-~vFw  156 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN-AVFW  156 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH-HHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHH-HHHH
Confidence            5799999999999999999 5799999999999999998876 4433

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=96.74  E-value=0.00053  Score=41.69  Aligned_cols=27  Identities=7%  Similarity=-0.079  Sum_probs=24.7

Q ss_pred             CCCC-CCChHHHHHHHHHHHHhCCchhh
Q 037092            1 MKPW-GFPDEEDRLICRLFAISGSRWSV   27 (76)
Q Consensus         1 i~~~-~wT~eED~~L~~~~~~~G~~W~~   27 (76)
                      +++| +|++||+..|+.++..+|++|+.
T Consensus        76 ~krg~~~p~e~~~rv~~~h~~~gn~~~~  103 (121)
T 2juh_A           76 QRRGEPVPQDLLDRVLAAHAYWSQQQGK  103 (121)
T ss_dssp             TCCCSCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHccchhc
Confidence            4677 99999999999999999999987

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=96.67  E-value=0.00028  Score=51.40  Aligned_cols=41  Identities=20%  Similarity=0.346  Sum_probs=0.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            4 WGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         4 ~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      ..||++|..+..+.+..||..|..|+.+||+||..+|-.+|
T Consensus       190 d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yY  230 (482)
T 2xag_B          190 DEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFY  230 (482)
T ss_dssp             -----------------------------------------
T ss_pred             cccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHh
Confidence            36999999999999999999999999999999999999887

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=96.66  E-value=0.0056  Score=33.32  Aligned_cols=42  Identities=10%  Similarity=-0.102  Sum_probs=36.7

Q ss_pred             CCCCChHHHHHHHHHHHHhCCc---hhhhhhcC--CCCCHHHHHHHH
Q 037092            3 PWGFPDEEDRLICRLFAISGSR---WSVIGAHL--PGRTDNETNNYY   44 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~---W~~Ia~~~--~gRt~~~~knrw   44 (76)
                      +-.||+|.-+..++++..+|..   +..|-..|  +|-|-.+|+.+.
T Consensus         7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHL   53 (64)
T 1irz_A            7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL   53 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHH
Confidence            4579999999999999999954   67888765  699999999987

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=96.59  E-value=0.0027  Score=43.85  Aligned_cols=47  Identities=21%  Similarity=0.277  Sum_probs=39.4

Q ss_pred             CCCCChHHHHHHHHHHHHhCC----chhhhhh------------cCCCCCHHHHHHHHhhchhh
Q 037092            3 PWGFPDEEDRLICRLFAISGS----RWSVIGA------------HLPGRTDNETNNYYRNTKLK   50 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~----~W~~Ia~------------~~~gRt~~~~knrw~~~~l~   50 (76)
                      ...||.|||..|+-++.+||-    .|..|..            ++..||+.+|..|. +++++
T Consensus       212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc-~tLi~  274 (304)
T 1ofc_X          212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC-NTLIT  274 (304)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH-HHHHH
T ss_pred             CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH-HHHHH
Confidence            468999999999999999994    5999862            45689999999999 66554

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.57  E-value=0.002  Score=41.42  Aligned_cols=26  Identities=19%  Similarity=0.311  Sum_probs=24.1

Q ss_pred             CCChHHHHHHHHHHHHhC-Cchhhhhh
Q 037092            5 GFPDEEDRLICRLFAISG-SRWSVIGA   30 (76)
Q Consensus         5 ~wT~eED~~L~~~~~~~G-~~W~~Ia~   30 (76)
                      .||.+||..|+..+.+|| ++|..|..
T Consensus       136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~  162 (211)
T 4b4c_A          136 DWGKEDDSNLLIGIYEYGYGSWEMIKM  162 (211)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence            699999999999999999 89998865

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=95.95  E-value=0.0064  Score=41.30  Aligned_cols=27  Identities=22%  Similarity=0.292  Sum_probs=24.4

Q ss_pred             CCCChHHHHHHHHHHHHhC-Cchhhhhh
Q 037092            4 WGFPDEEDRLICRLFAISG-SRWSVIGA   30 (76)
Q Consensus         4 ~~wT~eED~~L~~~~~~~G-~~W~~Ia~   30 (76)
                      ..|+.+||..|+..+.+|| +.|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            3599999999999999999 89998864

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=95.55  E-value=0.0079  Score=36.51  Aligned_cols=24  Identities=8%  Similarity=-0.212  Sum_probs=21.9

Q ss_pred             CCCCCCChHH-HHHHHHHHHHhCCc
Q 037092            1 MKPWGFPDEE-DRLICRLFAISGSR   24 (76)
Q Consensus         1 i~~~~wT~eE-D~~L~~~~~~~G~~   24 (76)
                      +++|.|+++| +..|+.++..+|++
T Consensus        90 ~kr~~~~p~e~~~~v~~~h~~~g~~  114 (122)
T 2roh_A           90 QRRGAPVPQELLDRVLAAQAYWSVD  114 (122)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHHSS
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHhhH
Confidence            5789999999 89999999999975

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=95.14  E-value=0.031  Score=39.60  Aligned_cols=47  Identities=26%  Similarity=0.340  Sum_probs=38.4

Q ss_pred             CCCCChHHHHHHHHHHHHhC----Cchhhhhhc------------CCCCCHHHHHHHHhhchhh
Q 037092            3 PWGFPDEEDRLICRLFAISG----SRWSVIGAH------------LPGRTDNETNNYYRNTKLK   50 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G----~~W~~Ia~~------------~~gRt~~~~knrw~~~~l~   50 (76)
                      ...||++||..||-++.+||    +.|..|-..            |..||+..|..|. +++++
T Consensus       228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc-~tLi~  290 (374)
T 2y9y_A          228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRG-NTLLQ  290 (374)
T ss_dssp             CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHH-HHHHH
T ss_pred             CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH-HHHHH
Confidence            45799999999999999999    459887432            4679999999999 66554

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=95.12  E-value=0.032  Score=35.70  Aligned_cols=46  Identities=20%  Similarity=0.253  Sum_probs=38.6

Q ss_pred             CCCCChHHHHHHHHHHHHhC---Cchhhhhh--cCCCCCHHHHHHHHhhchh
Q 037092            3 PWGFPDEEDRLICRLFAISG---SRWSVIGA--HLPGRTDNETNNYYRNTKL   49 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G---~~W~~Ia~--~~~gRt~~~~knrw~~~~l   49 (76)
                      ..+||+.|=..+++.+..||   .+|..|+.  .|+++|...|+..+ ...+
T Consensus         7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~-~~f~   57 (211)
T 4b4c_A            7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLG-ELVH   57 (211)
T ss_dssp             -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHH-HHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHH-HHHH
Confidence            36899999999999999999   57999986  47899999999876 4433

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=91.28  E-value=0.033  Score=30.78  Aligned_cols=35  Identities=9%  Similarity=-0.129  Sum_probs=23.2

Q ss_pred             HHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhhc
Q 037092           40 TNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKN   75 (76)
Q Consensus        40 ~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (76)
                      +.-|| ..+|.+.+.+++|+++++..+.+.++.+++
T Consensus         9 ~~~~~-~~~ldP~i~k~~wT~EED~~L~~l~~~~G~   43 (73)
T 2llk_A            9 SGREN-LYFQGDRNHVGKYTPEEIEKLKELRIKHGN   43 (73)
T ss_dssp             -----------CCCCCCSSCHHHHHHHHHHHHHHSS
T ss_pred             cCcce-eeecCCCCCCCCCCHHHHHHHHHHHHHHCC
Confidence            34577 889999999999999999999999988875

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=88.99  E-value=1.3  Score=29.87  Aligned_cols=42  Identities=17%  Similarity=0.140  Sum_probs=37.5

Q ss_pred             CCCCChHHHHHHHHHHHHhC---Cchhhhhh--cCCCCCHHHHHHHH
Q 037092            3 PWGFPDEEDRLICRLFAISG---SRWSVIGA--HLPGRTDNETNNYY   44 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G---~~W~~Ia~--~~~gRt~~~~knrw   44 (76)
                      +++||.-|-..|++.+.+||   .+|..|+.  .|+.++...++.-+
T Consensus         3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~   49 (270)
T 2xb0_X            3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETY   49 (270)
T ss_dssp             TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHH
Confidence            68999999999999999999   57999875  57899999888877

>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}

Probab=88.59  E-value=0.84  Score=23.31  Aligned_cols=35  Identities=14%  Similarity=0.078  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            9 EEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         9 eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      +.+..++.++...|-.+..||..+ |-|...|+++.
T Consensus        18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~   52 (70)
T 2o8x_A           18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRV   52 (70)
T ss_dssp             HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH
Confidence            445556667667799999999998 88999999876

>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*

Probab=85.79  E-value=1.3  Score=23.19  Aligned_cols=37  Identities=11%  Similarity=0.205  Sum_probs=27.3

Q ss_pred             CChHHHHHHHHHHHH----hCCchhhhhhcCCCCCHHHHHHHH
Q 037092            6 FPDEEDRLICRLFAI----SGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         6 wT~eED~~L~~~~~~----~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      .++. +..++.++.-    .|-.+..||..+ |-|...|+.+.
T Consensus        11 L~~~-er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~   51 (73)
T 1ku3_A           11 LSER-EAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIE   51 (73)
T ss_dssp             SCHH-HHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHH
T ss_pred             CCHH-HHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHH
Confidence            3444 4445555554    578899999998 89999999976

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=83.36  E-value=3.2  Score=29.32  Aligned_cols=41  Identities=22%  Similarity=0.217  Sum_probs=36.3

Q ss_pred             CCCChHHHHHHHHHHHHhC-CchhhhhhcCC-CCCHHHHHHHH
Q 037092            4 WGFPDEEDRLICRLFAISG-SRWSVIGAHLP-GRTDNETNNYY   44 (76)
Q Consensus         4 ~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~-gRt~~~~knrw   44 (76)
                      +.||.-+=..++.++.+|| ..-..||..|. |.|...|+.+.
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~  166 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYA  166 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHH
Confidence            5799999999999999999 55899999997 99999999654

>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2

Probab=82.87  E-value=1.5  Score=22.55  Aligned_cols=36  Identities=11%  Similarity=0.099  Sum_probs=26.6

Q ss_pred             ChHHHHHHHHHHH----HhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            7 PDEEDRLICRLFA----ISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         7 T~eED~~L~~~~~----~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      ++.|- .++.++.    ..|-.+..||..+ |-|...|+.+.
T Consensus         7 ~~~er-~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~   46 (68)
T 2p7v_B            7 TAREA-KVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIE   46 (68)
T ss_dssp             CHHHH-HHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHH
T ss_pred             CHHHH-HHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHH
Confidence            44444 4444544    3478899999998 89999999987

>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}

Probab=82.31  E-value=2.4  Score=23.13  Aligned_cols=35  Identities=17%  Similarity=0.186  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            9 EEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         9 eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      +.+..++.++...|-.-..||..+ |-+...|+.+.
T Consensus        40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l   74 (92)
T 3hug_A           40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRL   74 (92)
T ss_dssp             HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH
Confidence            445566667777788999999998 89999999987

>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}

Probab=80.17  E-value=5.1  Score=23.76  Aligned_cols=55  Identities=20%  Similarity=0.327  Sum_probs=35.2

Q ss_pred             HHHHHHHHhC--------CchhhhhhcC--CCC---CHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHH
Q 037092           13 LICRLFAISG--------SRWSVIGAHL--PGR---TDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLR   71 (76)
Q Consensus        13 ~L~~~~~~~G--------~~W~~Ia~~~--~gR---t~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~   71 (76)
                      .|...|..+|        +.|..||..|  |..   .+..+++.| ..+|-+.-.   .++.+...+.+.+.
T Consensus        46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y-~k~L~~YE~---~~~~e~~~l~~~v~  113 (121)
T 2rq5_A           46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAY-CQYLLSYDS---LSPEEHRRLEKEVL  113 (121)
T ss_dssp             HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHH-HTTHHHHHH---CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHH-HHHhHHHHC---cCHHHHhhHHHHHH
Confidence            4556667777        4599999988  322   246799999 777766533   44555555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	76
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-07
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	3e-07
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	3e-06
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	2e-05
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	5e-05
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	6e-05
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-04
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	0.004

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (97), Expect = 2e-07
 Identities = 8/48 (16%), Positives = 19/48 (39%)

Query: 8  DEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEE 55
           EE  L  +     G  +  I   +  ++  +  N++ N + +   +E
Sbjct: 10 TEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDE 57

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 3e-07
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 1  MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHE 54
          M  W   ++E       F      + +I + L  +T  E   YY  TK    ++
Sbjct: 17 MNMWS--EQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENYK 68

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (88), Expect = 3e-06
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 6  FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNT 47
          + +EEDR+I +     G+RW+ I   LPGRTDN   N++ +T
Sbjct: 4  WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 45

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 2e-05
 Identities = 14/58 (24%), Positives = 22/58 (37%)

Query: 8  DEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKN 65
           EE  L  +  A  G RW+ I   +  RT  +  +Y R     +       + P +K 
Sbjct: 7  IEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT 64

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (83), Expect = 5e-05
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 9  EEDRLICRLFAISGSR---WSVIGAHLPGRTDNETNNYYRN-TKLKRKHEEGG 57
          E DR+I  +    G++   +SVI   L  +T  E ++ +R   +L     E G
Sbjct: 39 EADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTACESG 91

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 34.9 bits (80), Expect = 6e-05
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 2  KPWGFPDEEDRLICRLFAISGS----RWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGG 57
          +PW    +E++   R  A+       RW+ +   + GRT  E   +Y       K+ E G
Sbjct: 2  RPW--SAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESG 59

Query: 58 LKVP 61
           KVP
Sbjct: 60 -KVP 62

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.5 bits (79), Expect = 2e-04
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 6/47 (12%)

Query: 6  FPDEEDRLICRLFAISGSR------WSVIGAHLPGRTDNETNNYYRN 46
          F DEED  I  +   + +R      +  I  ++P  T N   + +R 
Sbjct: 4  FTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRV 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 30.1 bits (68), Expect = 0.004
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 6  FPDEEDRLICRLFAISGSR-WSVIGAHLPGRTDNETNNYYRN 46
          +  EED  + +L   +G+  W VI  +LP RTD +  + ++ 
Sbjct: 4  WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	76
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.91
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.9
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.87
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.86
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.81
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.8
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.8
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.75
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.73
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.71
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.71
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.66
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.64
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.58
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.92
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.8
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	98.33
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	98.3
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.76
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	96.8
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	96.26
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	95.36
d1rp3a2	71	Sigma factor sigma-28 (FliA) {Aquifex aeolicus [Ta	89.68
d1or7a1	68	SigmaE factor (RpoE) {Escherichia coli [TaxId: 562	82.27

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.3e-25  Score=115.85  Aligned_cols=47  Identities=38%  Similarity=0.705  Sum_probs=44.3

Q ss_pred             CCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhh
Q 037092            3 PWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLK   50 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~   50 (76)
                      ++|||+|||++|+++|.+||++|+.||.+|||||+++|+||| +.+++
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~-~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHH-HHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHH-HHHcC
Confidence            589999999999999999999999999999999999999999 77653

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.2e-24  Score=115.18  Aligned_cols=50  Identities=30%  Similarity=0.543  Sum_probs=47.5

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhchhhh
Q 037092            1 MKPWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNTKLKR   51 (76)
Q Consensus         1 i~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~~l~~   51 (76)
                      |+||+||+|||++|+++|.+|| .+|+.||+.|||||+.||++|| +.+|.|
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw-~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW-HNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHH-HHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH-HhhCCC
Confidence            6899999999999999999999 6899999999999999999999 888876

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.4e-23  Score=121.07  Aligned_cols=64  Identities=22%  Similarity=0.256  Sum_probs=59.8

Q ss_pred             CCCCChHHHHHHHHHHHHhCCc------hhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHH
Q 037092            3 PWGFPDEEDRLICRLFAISGSR------WSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLE   67 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~------W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~   67 (76)
                      |++||+|||++|+++|.+||.+      |+.||.+|||||++||++|| +.+|.+.+....+++.++..+.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw-~~~L~p~l~~~~~t~~ed~ll~   70 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRF-RVYLSKRLEYVYEVDKFGKLVR   70 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHH-HHTTGGGCCCEECBCTTSCBCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHH-HHHcCccccCCCCCCchhHHHH
Confidence            6899999999999999999975      99999999999999999999 9999999999999998887653

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2e-22  Score=105.71  Aligned_cols=48  Identities=29%  Similarity=0.493  Sum_probs=45.4

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhchhhh
Q 037092            3 PWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNTKLKR   51 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~~l~~   51 (76)
                      |++||+|||++|+++|.+|| ++|+.||.+|||||+.||++|| ..+|.|
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW-QKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHH-HHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH-HhhCCC
Confidence            68999999999999999999 5799999999999999999999 888876

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.2e-20  Score=98.47  Aligned_cols=47  Identities=26%  Similarity=0.229  Sum_probs=42.1

Q ss_pred             CCCCCChHHHHHHHHHHHHhCC-chhhhhhcCC--CCCHHHHHHHHhhchh
Q 037092            2 KPWGFPDEEDRLICRLFAISGS-RWSVIGAHLP--GRTDNETNNYYRNTKL   49 (76)
Q Consensus         2 ~~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~~~--gRt~~~~knrw~~~~l   49 (76)
                      ++++||+|||+.|+++|.+||. +|+.||..++  |||+.||++|| .++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw-~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW-RTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHH-HHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHH-HHHH
Confidence            5899999999999999999994 8999998754  99999999999 6543

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.9e-20  Score=98.98  Aligned_cols=50  Identities=18%  Similarity=0.220  Sum_probs=44.9

Q ss_pred             CCCCCChHHHHHHHHHHHHhC-Cchhhhhhc--CCCCCHHHHHHHHhhchhhhH
Q 037092            2 KPWGFPDEEDRLICRLFAISG-SRWSVIGAH--LPGRTDNETNNYYRNTKLKRK   52 (76)
Q Consensus         2 ~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~--~~gRt~~~~knrw~~~~l~~~   52 (76)
                      ++++||+|||++|+++|.+|| .+|+.||..  |+|||+.||++|| .+++++.
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rw-rn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW-RTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHH-HHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHH-HHHhcCC
Confidence            578999999999999999999 589999997  5699999999999 7776654

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4e-20  Score=100.95  Aligned_cols=55  Identities=25%  Similarity=0.267  Sum_probs=49.4

Q ss_pred             CCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCC
Q 037092            3 PWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGL   58 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~   58 (76)
                      ...||+|||.+|++++..||.+|..||.+|||||+.||++|| +.++++.......
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry-~~~~~~~~k~~~~   56 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYA-RQYFKNKVKCGLD   56 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHH-HHHHHHHSCSCTT
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHH-HHHHHHHHhcCCC
Confidence            467999999999999999999999999999999999999999 8888776655543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=8.6e-19  Score=90.58  Aligned_cols=44  Identities=14%  Similarity=0.265  Sum_probs=40.5

Q ss_pred             CCCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhch
Q 037092            4 WGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNTK   48 (76)
Q Consensus         4 ~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~~   48 (76)
                      ..||+|||.+|++++.+|| ++|..||.+|+|||+.||++|| ..+
T Consensus         2 ~~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~-~~~   46 (47)
T d1x41a1           2 PSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHY-MKY   46 (47)
T ss_dssp             SSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHH-HHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHH-HHh
Confidence            3699999999999999999 5799999999999999999999 543

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.73  E-value=2.8e-18  Score=97.82  Aligned_cols=51  Identities=16%  Similarity=0.192  Sum_probs=44.9

Q ss_pred             CCChHHHHHHHHHHHHhC-Cchhhhhhc----CCCCCHHHHHHHHhhchhhhHHhhC
Q 037092            5 GFPDEEDRLICRLFAISG-SRWSVIGAH----LPGRTDNETNNYYRNTKLKRKHEEG   56 (76)
Q Consensus         5 ~wT~eED~~L~~~~~~~G-~~W~~Ia~~----~~gRt~~~~knrw~~~~l~~~~~~~   56 (76)
                      |||+|||+.|+++|.+|| .+|+.|+..    ++|||+.+|++|| +++|+......
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RW-rn~l~~~~~~~   57 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKW-KTLVHTASIAP   57 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHH-HHHHHHHHSCG
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHH-HHHhhhhccCc
Confidence            899999999999999999 589999974    6899999999999 88887655433

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7.9e-18  Score=90.63  Aligned_cols=43  Identities=12%  Similarity=0.269  Sum_probs=40.8

Q ss_pred             CCCCCChHHHHHHHHHHHHhCC----chhhhhhcCCCCCHHHHHHHH
Q 037092            2 KPWGFPDEEDRLICRLFAISGS----RWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         2 ~~~~wT~eED~~L~~~~~~~G~----~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      .+++||+|||++|++++..||.    +|..||.+|||||+.||++||
T Consensus        11 ~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~   57 (60)
T d2cqra1          11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY   57 (60)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHH
Confidence            4789999999999999999995    599999999999999999999

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.71  E-value=9e-18  Score=91.23  Aligned_cols=48  Identities=23%  Similarity=0.443  Sum_probs=42.2

Q ss_pred             CCCChHHHHHHHHHHHHhCC----chhhhhhcCCCCCHHHHHHHHhhchhhhHH
Q 037092            4 WGFPDEEDRLICRLFAISGS----RWSVIGAHLPGRTDNETNNYYRNTKLKRKH   53 (76)
Q Consensus         4 ~~wT~eED~~L~~~~~~~G~----~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~   53 (76)
                      .+||+|||.+|++++..||.    +|..||.+|||||+.||++|| +. |.+.+
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~-~~-L~~di   53 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EI-LVEDI   53 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHH-HH-HHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHH-HH-HHHHh
Confidence            48999999999999999995    499999999999999999999 43 44433

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.9e-17  Score=87.98  Aligned_cols=46  Identities=13%  Similarity=0.200  Sum_probs=42.6

Q ss_pred             CCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchh
Q 037092            3 PWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKL   49 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l   49 (76)
                      +.+||+|||+++++++..||.+|..||.+|||||..+|+++| +.+.
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y-~~~~   50 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF-VNYR   50 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHH-HHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHH-HHHH
Confidence            467999999999999999999999999999999999999999 5543

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.3e-17  Score=88.62  Aligned_cols=42  Identities=19%  Similarity=0.252  Sum_probs=40.8

Q ss_pred             CCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            3 PWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      ..+||+|||+++++++.+||.+|..||.+|||||..||+++|
T Consensus        17 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~y   58 (68)
T d1xc5a1          17 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY   58 (68)
T ss_dssp             TTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHH
Confidence            468999999999999999999999999999999999999999

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.1e-15  Score=88.74  Aligned_cols=47  Identities=23%  Similarity=0.365  Sum_probs=42.7

Q ss_pred             CCCCChHHHHHHHHHHHHhCCc---hhhhhhcCCCCCHHHHHHHHhhchhh
Q 037092            3 PWGFPDEEDRLICRLFAISGSR---WSVIGAHLPGRTDNETNNYYRNTKLK   50 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~---W~~Ia~~~~gRt~~~~knrw~~~~l~   50 (76)
                      ...||.|||.+||..+.++|++   |..||..|+|||+++|++|| ..+++
T Consensus        33 ~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf-~~Lm~   82 (95)
T d1ug2a_          33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF-RELMQ   82 (95)
T ss_dssp             CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHH-HHHHH
T ss_pred             cCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHH-HHHHH
Confidence            4579999999999999999987   99999999999999999999 55443

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=1.5e-09  Score=57.10  Aligned_cols=41  Identities=20%  Similarity=0.261  Sum_probs=38.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCchhhhhhc-CCCCCHHHHHHHH
Q 037092            4 WGFPDEEDRLICRLFAISGSRWSVIGAH-LPGRTDNETNNYY   44 (76)
Q Consensus         4 ~~wT~eED~~L~~~~~~~G~~W~~Ia~~-~~gRt~~~~knrw   44 (76)
                      ..||+||-.+..+.+..||..|..|++. +|+||..+|.+.|
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fY   43 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY   43 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHH
Confidence            4799999999999999999999999985 6999999999998

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=6.7e-09  Score=55.06  Aligned_cols=40  Identities=20%  Similarity=0.309  Sum_probs=37.8

Q ss_pred             CCCChHHHHHHHHHHHHhC----CchhhhhhcCCCCCHHHHHHHH
Q 037092            4 WGFPDEEDRLICRLFAISG----SRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         4 ~~wT~eED~~L~~~~~~~G----~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      +.||+||+.+|.++..+|.    .+|..||..+ |||..+|..|+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~   45 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKA   45 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHH
Confidence            5799999999999999997    5699999999 99999999999

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=6.9e-07  Score=47.04  Aligned_cols=46  Identities=17%  Similarity=0.296  Sum_probs=38.7

Q ss_pred             CCCCChHHHHHHHHHHHHhC--------Cc-hhhhhh-cCCCCCHHHHHHHHhhchh
Q 037092            3 PWGFPDEEDRLICRLFAISG--------SR-WSVIGA-HLPGRTDNETNNYYRNTKL   49 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G--------~~-W~~Ia~-~~~gRt~~~~knrw~~~~l   49 (76)
                      +-+||.|||+.|++.|..+.        +. |..++. .+|.+|-.+.++|| ...|
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY-~K~L   57 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRY-LKHL   57 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHH-HHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHH-HHHh
Confidence            56999999999999998873        22 999985 68999999999999 5444

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=1.5e-06  Score=43.20  Aligned_cols=42  Identities=21%  Similarity=0.317  Sum_probs=37.5

Q ss_pred             CCCCChHHHHHHHHHHHHhCCchhhhhhcC---CCCCHHHHHHHH
Q 037092            3 PWGFPDEEDRLICRLFAISGSRWSVIGAHL---PGRTDNETNNYY   44 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~---~gRt~~~~knrw   44 (76)
                      +..||+||-..|...|..+|+.|..|-=.+   |||+...+...|
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky   45 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKY   45 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHH
Confidence            458999999999999999999999987544   799999998887

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.76  E-value=3.1e-05  Score=41.05  Aligned_cols=42  Identities=10%  Similarity=-0.075  Sum_probs=35.9

Q ss_pred             CCCCChHHHHHHHHHHHHhCCchh---hhhhc--CCCCCHHHHHHHH
Q 037092            3 PWGFPDEEDRLICRLFAISGSRWS---VIGAH--LPGRTDNETNNYY   44 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~W~---~Ia~~--~~gRt~~~~knrw   44 (76)
                      +-.||+||-+..++++..+|..|.   .|...  +||+|..+|+.+-
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHl   53 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL   53 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHH
Confidence            457999999999999999998774   56554  5899999999986

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.002  Score=34.34  Aligned_cols=47  Identities=19%  Similarity=0.276  Sum_probs=40.5

Q ss_pred             CCCCChHHHHHHHHHHHHhCCc----hhhhhhcCCCCCHHHHHHHHhhchhh
Q 037092            3 PWGFPDEEDRLICRLFAISGSR----WSVIGAHLPGRTDNETNNYYRNTKLK   50 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G~~----W~~Ia~~~~gRt~~~~knrw~~~~l~   50 (76)
                      .+.|+++|=++|-.++..+...    |+.+|..+..||+..|...| ...++
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky-~~~~~   58 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKY-MENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHH-HHSSS
T ss_pred             ccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHH-HhCcc
Confidence            4689999999999999998844    99999999999999999999 55433

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.26  E-value=0.0039  Score=36.70  Aligned_cols=47  Identities=21%  Similarity=0.333  Sum_probs=37.3

Q ss_pred             CCCCChHHHHHHHHHHHHhC-Cc---hhhhhh------------cCCCCCHHHHHHHHhhchhh
Q 037092            3 PWGFPDEEDRLICRLFAISG-SR---WSVIGA------------HLPGRTDNETNNYYRNTKLK   50 (76)
Q Consensus         3 ~~~wT~eED~~L~~~~~~~G-~~---W~~Ia~------------~~~gRt~~~~knrw~~~~l~   50 (76)
                      +..+|.|||..|+-++.+|| .+   |..|..            +|..||+..+..|. ++.+.
T Consensus        49 ~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~-~tLi~  111 (128)
T d1ofcx2          49 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC-NTLIT  111 (128)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH-HHHHH
T ss_pred             CCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHH-HHHHH
Confidence            34699999999999999999 55   877632            12579999999999 66554

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.36  E-value=0.042  Score=27.37  Aligned_cols=40  Identities=15%  Similarity=0.214  Sum_probs=36.5

Q ss_pred             CCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHH
Q 037092            5 GFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         5 ~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      .||.-|=+..+.+..+|| ..-..||..|.|.|...|+...
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~   41 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN   41 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHH
Confidence            489999999999999999 5799999999999999998864

>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors
family: Sigma4 domain
domain: Sigma factor sigma-28 (FliA)
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.68  E-value=0.44  Score=23.68  Aligned_cols=36  Identities=11%  Similarity=0.119  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            8 DEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         8 ~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      |+.+..++.++...|-....||..+ |-|...|+++.
T Consensus        23 ~~~~r~v~~l~~~~~~s~~eIA~~l-gis~~tv~~~~   58 (71)
T d1rp3a2          23 PEREKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLK   58 (71)
T ss_dssp             CHHHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhHhCCHHHHHHHH-CCCHHHHHHHH
Confidence            3456677778888888999999999 99999999987

>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors
family: Sigma4 domain
domain: SigmaE factor (RpoE)
species: Escherichia coli [TaxId: 562]

Probab=82.27  E-value=1.7  Score=21.39  Aligned_cols=36  Identities=17%  Similarity=0.182  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092            8 DEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY   44 (76)
Q Consensus         8 ~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw   44 (76)
                      ++++..++.++...|-+-..||..+ |-+.+.|+.+.
T Consensus        20 p~~~r~v~~l~~~~~~s~~eIA~~l-gis~~tv~~~l   55 (68)
T d1or7a1          20 PEDLRMAITLRELDGLSYEEIAAIM-DCPVGTVRSRI   55 (68)
T ss_dssp             CHHHHHHHHHHHTTCCCHHHHHHHT-TSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence            4567777888888888899999999 99999999998