Citrus Sinensis ID: 037110

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
MDPLRNDPQSVPERYIQDQKDRPLDTEFYPASLKLPVMDFSLASGDEDEQRKLDGACKESGFFQAAVAAFCELHLDEKMKYASGSYSLQIEARLCSLRATKARLGCSSTILGRIQRVAEEVLARLSLLMGMDKDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKDK
ccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHcccEEEEccccccccHHHHHHHccccccEEEEcEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccEEEEccccccccccccccccccccccEEEEEEcccccccEEEEccc
ccccccccccccHHccccccccccccccccccccccEEEHHHccccHHHHHHHHHHHHHcccEEEEccccccccHHHHHHHHcccccEcccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEccccccccccEccccccccccEEEEEEEcccccEEEEEEccc
mdplrndpqsvperyiqdqkdrpldtefypaslklpvmdfslasgdedeqrKLDGACKESGFFQAAVAAFCELHLDEKMKYASGSYSLQIEARLCSLRATKARLGCSSTILGRIQRVAEEVLARLSLLMGMDKDGLKMLHREMKQAVRmnyyptcsrpdlvhgvsphsdactITFLLLDDEITALQIKHKDK
mdplrndpqsvperyiqdqkdrplDTEFYPASLKLPVMDFSLASGDEDEQRKLDGACKESGFFQAAVAAFCELHLDEKMKYASGSYSLQIEARLCSLRATKARLGcsstilgriqRVAEEVLARLSLLMGMDKDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKDK
MDPLRNDPQSVPERYIQDQKDRPLDTEFYPASLKLPVMDFSLASGDEDEQRKLDGACKESGFFQAAVAAFCELHLDEKMKYASGSYSLQIEARLCSLRATKARLGCSSTILGRIQRVAEEVLARLSLLMGMDKDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKDK
********************************LKLPV******************ACKESGFFQAAVAAFCELHLDEKMKYASGSYSLQIEARLCSLRATKARLGCSSTILGRIQRVAEEVLARLSLLMGMDKDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQI*****
*D*****PQSVPERYIQDQKD**********SLKLPVMDFSLASGDEDEQRKLDGACKESGFFQAAVAAFCELHLDEKMKYASGSYSLQIEARLCSLRATKARLGCSSTILGRIQRVAEEVLARLSLLMGMDKDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHK**
***********PERYIQDQKDRPLDTEFYPASLKLPVMDFSLASGDEDEQRKLDGACKESGFFQAAVAAFCELHLDEKMKYASGSYSLQIEARLCSLRATKARLGCSSTILGRIQRVAEEVLARLSLLMGMDKDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKDK
*********S********QKDRPLDTEFYPASLKLPVMDFSLASGDEDEQRKLDGACKESGFFQAAVAAFCELHLDEKMKYASGSYSLQIEARLCSLRATKARLGCSSTILGRIQRVAEEVLARLSLLMGMDKDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKD*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDPLRNDPQSVPERYIQDQKDRPLDTEFYPASLKLPVMDFSLASGDEDEQRKLDGACKESGFFQAAVAAFCELHLDEKMKYASGSYSLQIEARLCSLRATKARLGCSSTILGRIQRVAEEVLARLSLLMGMDKDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKDK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query192 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops no no 0.953 0.511 0.255 7e-13
Q96330336 Flavonol synthase/flavano no no 0.906 0.517 0.283 1e-10
D4N501 364 Probable 2-oxoglutarate/F N/A no 0.947 0.5 0.259 2e-10
Q00985 314 1-aminocyclopropane-1-car N/A no 0.796 0.487 0.262 4e-10
D4N502360 Codeine O-demethylase OS= N/A no 0.75 0.4 0.276 1e-09
Q07512348 Flavonol synthase/flavano N/A no 0.911 0.502 0.268 2e-09
Q39110 377 Gibberellin 20 oxidase 1 no no 0.906 0.461 0.215 2e-09
Q7XZQ8 365 Flavone synthase OS=Petro N/A no 0.869 0.457 0.282 2e-09
Q43792 319 1-aminocyclopropane-1-car N/A no 0.802 0.482 0.251 3e-09
Q7XZQ6337 Flavonol synthase/flavano N/A no 0.937 0.534 0.256 4e-09
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score = 73.9 bits (180), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 109/231 (47%), Gaps = 48/231 (20%)

Query: 10  SVPERYIQDQKDRPLDTEFYPASLKLPVMDFSL---ASGDEDEQRKLDGACKESGFFQ-- 64
           +VP RY++  +D+    + +   +++P++D      ++  + E  KLD ACKE GFFQ  
Sbjct: 28  TVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLV 87

Query: 65  -------------AAVAAFCELHLDEKMKYA---------SGSYSLQIEARL-------- 94
                        + +  F  L ++EK K+            ++ +  + +L        
Sbjct: 88  NHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFFH 147

Query: 95  ----CSLRAT----KARLGCSSTI---LGRIQRVAEEVLARLSLLMGMDKDGLKMLHREM 143
                 LR      K  L    T+      +Q VA+ ++A+++  + +  + L+ L  ++
Sbjct: 148 TVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDV 207

Query: 144 K--QAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKDK 192
              Q++RMNYYP C +PD V G++PHSD+  +T L+  +++  LQIK   K
Sbjct: 208 DSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGK 258

Arabidopsis thaliana (taxid: 3702)
>sp|Q96330|FLS1_ARATH Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|Q00985|ACCO1_MALDO 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1 Back     alignment and function description
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1 Back     alignment and function description
>sp|Q39110|GAOX1_ARATH Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2 Back     alignment and function description
>sp|Q7XZQ8|FNSI_PETCR Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1 Back     alignment and function description
>sp|Q43792|ACCO_TOBAC 1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1 Back     alignment and function description
>sp|Q7XZQ6|FLS_PETCR Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query192
296086204 367 unnamed protein product [Vitis vinifera] 0.973 0.509 0.484 2e-48
359486618 358 PREDICTED: protein SRG1-like [Vitis vini 0.973 0.522 0.484 3e-48
225440426 368 PREDICTED: protein SRG1-like [Vitis vini 0.958 0.5 0.395 2e-34
297740339 943 unnamed protein product [Vitis vinifera] 0.958 0.195 0.395 4e-34
356567967 361 PREDICTED: protein SRG1-like [Glycine ma 0.973 0.518 0.365 3e-28
356567965 364 PREDICTED: protein SRG1-like [Glycine ma 0.973 0.513 0.372 5e-28
225440424 340 PREDICTED: protein SRG1 [Vitis vinifera] 0.921 0.520 0.343 6e-27
356523177 309 PREDICTED: LOW QUALITY PROTEIN: protein 0.958 0.595 0.356 2e-25
388517601 370 unknown [Medicago truncatula] 0.973 0.505 0.320 8e-25
357504569 336 Protein SRG1 [Medicago truncatula] gi|35 0.973 0.556 0.320 3e-24
>gi|296086204|emb|CBI31645.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/231 (48%), Positives = 140/231 (60%), Gaps = 44/231 (19%)

Query: 4   LRNDPQSVPERYIQDQKDRPLDTEFYPASLKLPVMDFSL-ASGDEDEQRKLDGACKESGF 62
           ++ND QSVPERYIQ+ K+RPL ++  P S ++P++D  L A GDEDE+ KL+ ACKE GF
Sbjct: 31  VKNDSQSVPERYIQEHKNRPLGSDSCPVSSQIPIIDLHLLACGDEDERTKLNFACKEWGF 90

Query: 63  FQA---------------AVAAFCELHLDEKMKYASGSYSLQIEAR-------------- 93
           FQ                AVAAF EL L+EK KY+     LQ   +              
Sbjct: 91  FQVINHGVAEEVLQKMKTAVAAFFELPLEEKKKYSMAENDLQGYGQGYVVSDQQKLDWGD 150

Query: 94  ---LCSLRATKARLG-CSSTILG----------RIQRVAEEVLARLSLLMGMDKDGLKML 139
              L +L     ++     T+ G           + +V EE+L  LSLLMGMDKDGL++L
Sbjct: 151 LIFLLTLPNKYKKMKYWPVTVTGFKEGIEEYATEMHKVTEEILGNLSLLMGMDKDGLRLL 210

Query: 140 HREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHK 190
           H EMKQA+R+NYYPTCSRPDLV GVSPHSDA +IT LL DDEIT LQI+HK
Sbjct: 211 HAEMKQAMRLNYYPTCSRPDLVLGVSPHSDASSITVLLQDDEITGLQIRHK 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359486618|ref|XP_002278096.2| PREDICTED: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225440426|ref|XP_002271148.1| PREDICTED: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740339|emb|CBI30521.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356567967|ref|XP_003552186.1| PREDICTED: protein SRG1-like [Glycine max] Back     alignment and taxonomy information
>gi|356567965|ref|XP_003552185.1| PREDICTED: protein SRG1-like [Glycine max] Back     alignment and taxonomy information
>gi|225440424|ref|XP_002271117.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356523177|ref|XP_003530218.1| PREDICTED: LOW QUALITY PROTEIN: protein SRG1-like [Glycine max] Back     alignment and taxonomy information
>gi|388517601|gb|AFK46862.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357504569|ref|XP_003622573.1| Protein SRG1 [Medicago truncatula] gi|355497588|gb|AES78791.1| Protein SRG1 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query192
TAIR|locus:2122679 353 AT4G25310 [Arabidopsis thalian 0.427 0.232 0.380 3.1e-17
TAIR|locus:2089428 364 LBO1 "LATERAL BRANCHING OXIDOR 0.328 0.173 0.428 6.3e-17
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.411 0.221 0.35 8.7e-17
TAIR|locus:2202980 356 AT1G78550 [Arabidopsis thalian 0.427 0.230 0.325 2.8e-15
TAIR|locus:2082058 363 JRG21 "jasmonate-regulated gen 0.395 0.209 0.354 8e-15
TAIR|locus:2169697 371 AT5G05600 [Arabidopsis thalian 0.395 0.204 0.346 2.2e-13
TAIR|locus:2159542336 FLS1 "flavonol synthase 1" [Ar 0.395 0.226 0.412 2.5e-12
TAIR|locus:2153924 341 DMR6 "DOWNY MILDEW RESISTANT 6 0.385 0.217 0.337 1.3e-11
TAIR|locus:2040575 366 AT2G36690 [Arabidopsis thalian 0.369 0.193 0.368 1.5e-11
TAIR|locus:2042942 353 AT2G38240 [Arabidopsis thalian 0.406 0.220 0.308 1.9e-11
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 151 (58.2 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
 Identities = 32/84 (38%), Positives = 51/84 (60%)

Query:   109 TILGRIQRVAEEVLARLSLLMGMDKDGL-KMLHREMKQAVRMNYYPTCSRPDLVHGVSPH 167
             T    ++ +A+ + A+L+  + +  + + K+   E+ Q +RMNYYP C  PD   G++PH
Sbjct:   169 TYSAELKSIAKVLFAKLASALKIKPEEMEKLFDDELGQRIRMNYYPPCPEPDKAIGLTPH 228

Query:   168 SDACTITFLLLDDEITALQIKHKD 191
             SDA  +T LL  +E+  LQIK KD
Sbjct:   229 SDATGLTILLQVNEVEGLQIK-KD 251
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082058 JRG21 "jasmonate-regulated gene 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159542 FLS1 "flavonol synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153924 DMR6 "DOWNY MILDEW RESISTANT 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040575 AT2G36690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018445001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (367 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query192
PLN02758 361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 5e-25
PLN02947 374 PLN02947, PLN02947, oxidoreductase 2e-19
PLN02393 362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 1e-18
PLN02704335 PLN02704, PLN02704, flavonol synthase 3e-16
PLN02216357 PLN02216, PLN02216, protein SRG1 6e-16
PLN03178 360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-13
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 4e-12
PLN02515 358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 5e-11
PLN02299 321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 1e-10
PLN02912 348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 6e-10
PLN02904 357 PLN02904, PLN02904, oxidoreductase 1e-09
PLN02276 361 PLN02276, PLN02276, gibberellin 20-oxidase 3e-08
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 4e-08
PLN02403 303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 7e-08
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 2e-07
PLN02750 345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-06
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-06
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 2e-06
PLN02997325 PLN02997, PLN02997, flavonol synthase 9e-05
PLN02254 358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 3e-04
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score = 99.1 bits (247), Expect = 5e-25
 Identities = 81/240 (33%), Positives = 113/240 (47%), Gaps = 54/240 (22%)

Query: 5   RNDPQSVPERYIQDQKDRP-LDTEFYPASLKLPVMDFS-LASGDEDEQR----KLDGACK 58
           ++ P +VPER+I+D  +RP L ++   A   +PV+DFS L  GD DE      KL  AC+
Sbjct: 22  KSKPTTVPERFIRDMDERPDLASDTLHAPDDIPVIDFSRLVKGDNDELFSEILKLRLACE 81

Query: 59  ESGFFQA---------------AVAAFCELHLDEKMKY--ASGS---------------- 85
           E GFFQ                    F  L L+EK KY  A G+                
Sbjct: 82  EWGFFQVINHGIELELLEEIEKVAREFFMLPLEEKQKYPMAPGTVQGYGQAFVFSEDQKL 141

Query: 86  -----YSLQIEA---RLCSLRATK-ARLGCSSTI---LGRIQRVAEEVLARLSLLMGMDK 133
                ++L +E    R   L  TK AR   S T+      I+ + + +L  +++ +G+ +
Sbjct: 142 DWCNMFALGVEPHFIRNPKLWPTKPARF--SETLEVYSREIRELCQRLLKYIAMTLGLKE 199

Query: 134 DGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLD-DEITALQIKHKDK 192
           D  + +  E  QAVRMNYYP CSRPDLV G+SPHSD   +T L         LQI   + 
Sbjct: 200 DRFEEMFGEAVQAVRMNYYPPCSRPDLVLGLSPHSDGSALTVLQQGKGSCVGLQILKDNT 259

Length = 361
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 192
PLN02216357 protein SRG1 100.0
PLN02758 361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912 348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947 374 oxidoreductase 100.0
PLN02254 358 gibberellin 3-beta-dioxygenase 100.0
PLN03178 360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02515 358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02276 361 gibberellin 20-oxidase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904 357 oxidoreductase 100.0
PLN02393 362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02704335 flavonol synthase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02750 345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
COG3491 322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02299 321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02156 335 gibberellin 2-beta-dioxygenase 100.0
PLN02403 303 aminocyclopropanecarboxylate oxidase 100.0
PLN03002 332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02485329 oxidoreductase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02365 300 2-oxoglutarate-dependent dioxygenase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.97
PLN03176120 flavanone-3-hydroxylase; Provisional 99.62
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.42
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.85
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=3.3e-45  Score=315.86  Aligned_cols=186  Identities=32%  Similarity=0.528  Sum_probs=155.1

Q ss_pred             CCCCCCCccccCCCCCCCCCCCCCCCCCCceeECCCC-CCC--HHHHHHHHHHHHhchhHHH---------------hHH
Q 037110            7 DPQSVPERYIQDQKDRPLDTEFYPASLKLPVMDFSLA-SGD--EDEQRKLDGACKESGFFQA---------------AVA   68 (192)
Q Consensus         7 ~~~~vp~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l-~~d--~~~~~~l~~A~~~~GFf~l---------------~~~   68 (192)
                      ++++||++|++|++++|...........||||||+.+ +++  .+++++|++||++||||||               .++
T Consensus        25 ~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~  104 (357)
T PLN02216         25 MITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQ  104 (357)
T ss_pred             CCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCHHHHHHHHHHHH
Confidence            6789999999999998753111111147999999998 654  3689999999999999999               999


Q ss_pred             HHhcCCHHHHhhhhc--CC---cc----ccccccccc-----------------cccCc-cc-HHHHHHHHHHHHHHHHH
Q 037110           69 AFCELHLDEKMKYAS--GS---YS----LQIEARLCS-----------------LRATK-AR-LGCSSTILGRIQRVAEE  120 (192)
Q Consensus        69 ~FF~lp~e~K~~~~~--G~---~~----~~~~~~~~~-----------------~wP~~-p~-r~~~~~y~~~~~~l~~~  120 (192)
                      +||+||.|+|+++..  +.   |.    .......+|                 .||+. ++ |+++++|+++|++|+.+
T Consensus       105 ~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~y~~~~~~l~~~  184 (357)
T PLN02216        105 DFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKI  184 (357)
T ss_pred             HHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999865  11   21    111222233                 69987 78 99999999999999999


Q ss_pred             HHHHHHhhcCCChhHHHHHhcC-cccceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCcceeeeCCC
Q 037110          121 VLARLSLLMGMDKDGLKMLHRE-MKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKDK  192 (192)
Q Consensus       121 ll~~la~~Lgl~~~~f~~~~~~-~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~~G~  192 (192)
                      |+++||++||+++++|.+.+.+ ..+.||+||||||+.++.++|+++|||+|+||||+|+++++||||+++|+
T Consensus       185 ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~~~g~  257 (357)
T PLN02216        185 LFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDGK  257 (357)
T ss_pred             HHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeEEECCE
Confidence            9999999999999999999876 45789999999999988899999999999999999955699999998774

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query192
1w9y_A 319 The Structure Of Acc Oxidase Length = 319 9e-09
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 5e-06
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 5e-06
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 9e-06
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure 
Iteration: 1

 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 39/171 (22%)
Query: 56  ACKESGFFQAAVAAFCELHLDEKMKYASGSYSLQIEARLCSLRATKARLGCSSTILG--- 112
           AC+  GFF+           D   K   G Y    E R   L A+KA  G  + +     
Sbjct: 27  ACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEGVQAEVTDXDW 86
Query: 113 ---------------------------------RIQRVAEEVLARLSLLMGMDKDGLKML 139
                                            R++++AEE+L  L   +G++K  LK  
Sbjct: 87  ESTFFLKHLPISNISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNA 146
Query: 140 HREMKQ---AVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQI 187
               K      +++ YP C +PDL+ G+  H+DA  I  L  DD+++ LQ+
Sbjct: 147 FYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQL 197
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query192
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 6e-35
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 6e-33
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 7e-18
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 3e-15
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 1e-13
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-09
3oox_A 312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-04
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  125 bits (315), Expect = 6e-35
 Identities = 45/243 (18%), Positives = 89/243 (36%), Gaps = 59/243 (24%)

Query: 8   PQSVPERYIQDQKDRP-----LDTEFYPASLKLPVMDFSLASGDEDEQR-----KLDGAC 57
             S+P+ YI+ +++          E      ++P +D      D+++ R     +L  A 
Sbjct: 15  IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKAS 74

Query: 58  KESGFFQ---------------AAVAAFCELHLDEKMKYAS-----------GSYSLQIE 91
            + G                   A   F  L ++EK KYA+              +    
Sbjct: 75  LDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNAS 134

Query: 92  ARL-------CSLRATKAR---------LGCSSTIL---GRIQRVAEEVLARLSLLMGMD 132
            +L             + R                      ++ +A +V   LS+ +G++
Sbjct: 135 GQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLE 194

Query: 133 KDGLKMLHREMK---QAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKH 189
            D L+     ++     +++NYYP C +P+L  GV  H+D   +T  +L + +  LQ+ +
Sbjct: 195 PDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT-FILHNMVPGLQLFY 253

Query: 190 KDK 192
           + K
Sbjct: 254 EGK 256
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query192
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=8.9e-45  Score=312.07  Aligned_cols=187  Identities=26%  Similarity=0.436  Sum_probs=156.7

Q ss_pred             CCCCCCCCCccccCCCCCCCCCC---CC--CCCCCCceeECCCC-CCCH----HHHHHHHHHHHhchhHHH---------
Q 037110            5 RNDPQSVPERYIQDQKDRPLDTE---FY--PASLKLPVMDFSLA-SGDE----DEQRKLDGACKESGFFQA---------   65 (192)
Q Consensus         5 ~~~~~~vp~~~~~~~~~~~~~~~---~~--~~~~~iPvIDls~l-~~d~----~~~~~l~~A~~~~GFf~l---------   65 (192)
                      .+++++||++|++|++++|....   ..  ....+||||||+.+ ++++    +++++|++||++||||||         
T Consensus        12 ~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l   91 (356)
T 1gp6_A           12 KSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADL   91 (356)
T ss_dssp             HTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHH
T ss_pred             hcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHH
Confidence            34788999999999888875322   00  00136999999999 6664    378999999999999999         


Q ss_pred             ------hHHHHhcCCHHHHhhhhc--C--C---ccc----cccccccc-----------------cccCc-cc-HHHHHH
Q 037110           66 ------AVAAFCELHLDEKMKYAS--G--S---YSL----QIEARLCS-----------------LRATK-AR-LGCSST  109 (192)
Q Consensus        66 ------~~~~FF~lp~e~K~~~~~--G--~---~~~----~~~~~~~~-----------------~wP~~-p~-r~~~~~  109 (192)
                            .+++||+||.|+|+++..  +  .   |..    ......||                 .||+. ++ |+++++
T Consensus        92 ~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~  171 (356)
T 1gp6_A           92 MERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSE  171 (356)
T ss_dssp             HHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcchhhhHHHHH
Confidence                  899999999999999865  2  1   221    11222333                 59988 88 999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCChhHHHHHhc---CcccceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCcce
Q 037110          110 ILGRIQRVAEEVLARLSLLMGMDKDGLKMLHR---EMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQ  186 (192)
Q Consensus       110 y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~---~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQ  186 (192)
                      |+++|.+|+.+|+++|+++||+++++|.+.+.   .+.+.||+||||||+.++..+|+++|||+|+||||+| |+++|||
T Consensus       172 y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q-d~v~GLQ  250 (356)
T 1gp6_A          172 YAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQ  250 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEE-CSCCCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEEE-cCCCCeE
Confidence            99999999999999999999999999999987   4778899999999998888999999999999999999 8899999


Q ss_pred             eeeCCC
Q 037110          187 IKHKDK  192 (192)
Q Consensus       187 V~~~G~  192 (192)
                      |+++|+
T Consensus       251 V~~~g~  256 (356)
T 1gp6_A          251 LFYEGK  256 (356)
T ss_dssp             EEETTE
T ss_pred             EecCCc
Confidence            998774
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 192
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 2e-10
d1w9ya1 307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 1e-08
d1dcsa_ 311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 7e-06
d1odma_ 329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 0.002
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 59/242 (24%)

Query: 9   QSVPERYIQDQKDRP-----LDTEFYPASLKLPVMDFSLASGDEDEQR-----KLDGACK 58
            S+P+ YI+ +++          E      ++P +D      D+++ R     +L  A  
Sbjct: 15  ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASL 74

Query: 59  ESGFFQ---------------AAVAAFCELHLDEKMKYAS-------------------- 83
           + G                   A   F  L ++EK KYA+                    
Sbjct: 75  DWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASG 134

Query: 84  ----------GSYSLQIEARLCSLRATKARLGCSSTILGRIQRVAEEVLARLSLLMGMDK 133
                      +Y  +        +     +  +S     ++ +A +V   LS+ +G++ 
Sbjct: 135 QLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEP 194

Query: 134 DGLKMLHREMKQA---VRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHK 190
           D L+     +++    +++NYYP C +P+L  GV  H+D   +T  +L + +  LQ+ ++
Sbjct: 195 DRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT-FILHNMVPGLQLFYE 253

Query: 191 DK 192
            K
Sbjct: 254 GK 255
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query192
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1 307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=8.2e-44  Score=301.68  Aligned_cols=189  Identities=26%  Similarity=0.450  Sum_probs=158.2

Q ss_pred             CCCCCCCCCCCccccCCCCCCCCCCC-----CCCCCCCceeECCCC-CCCH----HHHHHHHHHHHhchhHHH-------
Q 037110            3 PLRNDPQSVPERYIQDQKDRPLDTEF-----YPASLKLPVMDFSLA-SGDE----DEQRKLDGACKESGFFQA-------   65 (192)
Q Consensus         3 ~~~~~~~~vp~~~~~~~~~~~~~~~~-----~~~~~~iPvIDls~l-~~d~----~~~~~l~~A~~~~GFf~l-------   65 (192)
                      ++.+|+++||++|+||++++|.....     ...+.+||||||+.+ ++|+    +++++|++||+++|||||       
T Consensus         9 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~~   88 (349)
T d1gp6a_           9 LAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPA   88 (349)
T ss_dssp             HHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCH
T ss_pred             HHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEccCCCH
Confidence            35689999999999999999875321     112358999999999 7765    478999999999999999       


Q ss_pred             --------hHHHHhcCCHHHHhhhhc----CC---ccc----ccccccc-------------c----cccCc-cc-HHHH
Q 037110           66 --------AVAAFCELHLDEKMKYAS----GS---YSL----QIEARLC-------------S----LRATK-AR-LGCS  107 (192)
Q Consensus        66 --------~~~~FF~lp~e~K~~~~~----G~---~~~----~~~~~~~-------------~----~wP~~-p~-r~~~  107 (192)
                              .+++||+||.|+|+|+..    |.   |..    ......+             +    .||+. +. ++.+
T Consensus        89 ~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~~f~e~~  168 (349)
T d1gp6a_          89 DLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEAT  168 (349)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccchHHHHH
Confidence                    899999999999999876    21   110    0000111             1    78988 88 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHhc---CcccceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCc
Q 037110          108 STILGRIQRVAEEVLARLSLLMGMDKDGLKMLHR---EMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITA  184 (192)
Q Consensus       108 ~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~---~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~G  184 (192)
                      ++|+++|.+++.+|+++++++||+++++|.+.+.   .+.+.||++||||++.+...+|+++|||+|+||||+| +.++|
T Consensus       169 ~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q-~~~~G  247 (349)
T d1gp6a_         169 SEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPG  247 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEE-CSCCC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEec-cCCcc
Confidence            9999999999999999999999999999998874   3567899999999998888999999999999999999 89999


Q ss_pred             ceeeeCCC
Q 037110          185 LQIKHKDK  192 (192)
Q Consensus       185 LQV~~~G~  192 (192)
                      |||+++|+
T Consensus       248 Lqv~~~g~  255 (349)
T d1gp6a_         248 LQLFYEGK  255 (349)
T ss_dssp             EEEEETTE
T ss_pred             eeeecCCc
Confidence            99998774
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure