Citrus Sinensis ID: 037116

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MLASLERNLLPDAVIRRLCRKILADRLHSVIIELRARPYVSLAVNLNFVDMREMPIAINTDSCTAKLFL
Secondary Structure (PSIPRED)
cHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHcHHHHHHHHHHHHHHHHHHHcEEEEccccHHHHHHHHHHHcccccccEEEEccccEEEEcc
Coil and Loop (DISEMBL)
MLASLERNLLPDAVIRRLCRKILADRLHSVIIELrarpyvslavnlnfvdmrempiaintdsctaklfl
Flexible Loop (DISEMBL)
mlaslernllpdAVIRRLCRKILADRLHSviielrarpyvsLAVNLNFVDMREMPIAintdsctaklfl
Low Complexity Region (SEG)
MLASLERNLLPDAVIRRLCRKILADRLHSVIIELRARPYVSLAVNLNFVDMREMPIAINTDSCTAKLFL
Disordered region (IsUnstruct)
********LLPDAVIRRLCRKILADRLHSVIIELRARPYVSLAVNLNFVDMREMPIAINTDSCTA****
Disordered Region (DISOPRED)
**AS*ERNLLPDAVIRRLCRKILADRL**************LAVNLNFVDMREMPIAINTDSC***LF*
Disordered Region (DISEMBL)
MLASLERNLLPDAVIRRLCRKILADRLHSVIIELRARPYVSLAVNLNFVDMREMPIAINTDSCTAKLFL
Disordered Region (DISPRO)
MLASLERNLLPDAVIRRLCRKILADRLHSVIIELRARPYVSLAVNLNFVDMREMPIAINTDSCTAKLFL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLASLERNLLPDAVIRRLCRKILADRLHSVIIELRARPYVSLAVNLNFVDMREMPIAINTDSCTAKLFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
224142824	355	predicted protein [Populus trichocarpa]	0.840	0.163	0.612	2e-09
449447151	355	PREDICTED: (S)-coclaurine N-methyltransf	0.927	0.180	0.5	1e-06
30689611	355	S-adenosyl-L-methionine-dependent methyl	0.927	0.180	0.470	4e-06
297798634	355	coclaurine N-methyltransferase [Arabidop	0.840	0.163	0.5	5e-05
194703734	357	unknown [Zea mays] gi|194704128|gb|ACF86	0.942	0.182	0.432	0.0001
21593795	355	coclaurine N-methyltransferase [Arabidop	0.826	0.160	0.491	0.0007
18418151	355	S-adenosyl-L-methionine-dependent methyl	0.826	0.160	0.491	0.0007
26451688	355	unknown protein [Arabidopsis thaliana]	0.826	0.160	0.491	0.0007

>gi|224142824|ref|XP_002324742.1| predicted protein [Populus trichocarpa] gi|222866176|gb|EEF03307.1| predicted protein [Populus trichocarpa]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/62 (61%), Positives = 43/62 (69%), Gaps = 4/62 (6%)

Query: 1  MLASLERNLLPDAVIRRLCRKILADRLHSVIIELRARPYVSLAVNLNFV-DMREMPIAIN 59
          MLASLERNLLPDAVIRRL R +LADRL S     +    + LA  L FV  ++EMPIAI 
Sbjct: 16 MLASLERNLLPDAVIRRLTRMLLADRLRSC---YKTSSELQLADLLQFVHSLKEMPIAIK 72

Query: 60 TD 61
          TD
Sbjct: 73 TD 74

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447151|ref|XP_004141332.1| PREDICTED: (S)-coclaurine N-methyltransferase-like [Cucumis sativus] gi|449486691|ref|XP_004157370.1| PREDICTED: (S)-coclaurine N-methyltransferase-like [Cucumis sativus]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 2  LASLERNLLPDAVIRRLCRKILADRLHSVIIELRARPYVSLAVNLNFV-DMREMPIAINT 60
          LASLERNLLPDA+IR   R +LA RL S     +    + L+  L+FV  +REMPIAI T
Sbjct: 17 LASLERNLLPDAIIRTFTRLLLASRLRS---GYKPSSQLQLSELLHFVHSLREMPIAIKT 73

Query: 61 DSCTAKLF 68
          D   A+ +
Sbjct: 74 DKPKAQHY 81

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30689611|ref|NP_195038.2| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|29028868|gb|AAO64813.1| At4g33120 [Arabidopsis thaliana] gi|110742942|dbj|BAE99366.1| hypothetical protein [Arabidopsis thaliana] gi|332660776|gb|AEE86176.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 2  LASLERNLLPDAVIRRLCRKILADRLHSVIIELRARPYVSLAVNLNFVD-MREMPIAINT 60
          L  LE+NLLPD VIRRL R +LA RL SV    +    + L+  L FVD +++MPIAINT
Sbjct: 17 LTLLEKNLLPDLVIRRLIRLLLASRLRSV---YKPTAEMQLSDLLRFVDSLKKMPIAINT 73

Query: 61 DSCTAKLF 68
          ++   + +
Sbjct: 74 ETAKTQHY 81

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798634|ref|XP_002867201.1| coclaurine N-methyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297313037|gb|EFH43460.1| coclaurine N-methyltransferase [Arabidopsis lyrata subsp. lyrata]

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 4/62 (6%)

Query: 1  MLASLERNLLPDAVIRRLCRKILADRLHSVIIELRARPYVSLAVNLNFVD-MREMPIAIN 59
          +L  LE+NLLPD VIRRL R +LA RL S     +    + L+  L FVD +++MPIAIN
Sbjct: 16 VLTLLEKNLLPDLVIRRLTRLLLAGRLRS---GYKPTAEMQLSDLLRFVDSIKKMPIAIN 72

Query: 60 TD 61
          T+
Sbjct: 73 TE 74

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194703734|gb|ACF85951.1| unknown [Zea mays] gi|194704128|gb|ACF86148.1| unknown [Zea mays] gi|413954373|gb|AFW87022.1| hypothetical protein ZEAMMB73_105024 [Zea mays]

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 2  LASLERNLLPDAVIRRLCRKILADRLHSVIIELRARPYVSLAVNLNFVDMREMPIAINTD 61
          L +LERNL+PDAV RRL R +LA RL      L + P     +      + EMPIAI TD
Sbjct: 19 LVALERNLIPDAVTRRLTRLLLAQRLRQGY--LPSAPLQLQQLLQFVHSLEEMPIAIETD 76

Query: 62 SCTAKLF 68
             A+ +
Sbjct: 77 KAKAQHY 83

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593795|gb|AAM65762.1| coclaurine N-methyltransferase [Arabidopsis thaliana]

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 4/61 (6%)

Query: 2  LASLERNLLPDAVIRRLCRKILADRLHSVIIELRARPYVSLAVNLNFVD-MREMPIAINT 60
          L  LE NLLPD VIRRL R +LA RL S     +    + L+  L FVD +++MPIAI+T
Sbjct: 17 LTLLEMNLLPDIVIRRLTRLLLAGRLRS---GYKPTAEMQLSDLLRFVDSIKKMPIAIHT 73

Query: 61 D 61
          +
Sbjct: 74 E 74

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18418151|ref|NP_567912.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|334187113|ref|NP_001190896.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|22531140|gb|AAM97074.1| putative protein [Arabidopsis thaliana] gi|332660774|gb|AEE86174.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|332660775|gb|AEE86175.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 4/61 (6%)

Query: 2  LASLERNLLPDAVIRRLCRKILADRLHSVIIELRARPYVSLAVNLNFVD-MREMPIAINT 60
          L  LE NLLPD VIRRL R +LA RL S     +    + L+  L FVD +++MPIAI+T
Sbjct: 17 LTLLEMNLLPDIVIRRLTRLLLAGRLRS---GYKPTAEMQLSDLLRFVDSIKKMPIAIHT 73

Query: 61 D 61
          +
Sbjct: 74 E 74

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26451688|dbj|BAC42939.1| unknown protein [Arabidopsis thaliana]

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 4/61 (6%)

Query: 2  LASLERNLLPDAVIRRLCRKILADRLHSVIIELRARPYVSLAVNLNFVD-MREMPIAINT 60
          L  LE NLLPD VIRRL R +LA RL S     +    + L+  L FVD +++MPIAI+T
Sbjct: 17 LTLLEMNLLPDIVIRRLTRLLLAGRLRS---GYKPTAEMQLSDLLRFVDSIKKMPIAIHT 73

Query: 61 D 61
          +
Sbjct: 74 E 74

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
TAIR|locus:2125934	355	AT4G33120 [Arabidopsis thalian	0.869	0.169	0.530	8.5e-08
TAIR|locus:2125924	355	AT4G33110 [Arabidopsis thalian	0.826	0.160	0.491	1e-05

TAIR|locus:2125934 AT4G33120 [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 8.5e-08, P = 8.5e-08
 Identities = 35/66 (53%), Positives = 44/66 (66%)

Query:     2 LASLERNLLPDAVIRRLCRKILADRLHSVIIELRARPYVSLAVNLNFVD-MREMPIAINT 60
             L  LE+NLLPD VIRRL R +LA RL SV    +    + L+  L FVD +++MPIAINT
Sbjct:    17 LTLLEKNLLPDLVIRRLIRLLLASRLRSVY---KPTAEMQLSDLLRFVDSLKKMPIAINT 73

Query:    61 DSCTAK 66
             +  TAK
Sbjct:    74 E--TAK 77

GO:0005737 "cytoplasm" evidence=ISM

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0030794 "(S)-coclaurine-N-methyltransferase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2125924 AT4G33110 [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 30/61 (49%), Positives = 39/61 (63%)

Query:     2 LASLERNLLPDAVIRRLCRKILADRLHSVIIELRARPYVSLAVNLNFVD-MREMPIAINT 60
             L  LE NLLPD VIRRL R +LA RL S     +    + L+  L FVD +++MPIAI+T
Sbjct:    17 LTLLEMNLLPDIVIRRLTRLLLAGRLRS---GYKPTAEMQLSDLLRFVDSIKKMPIAIHT 73

Query:    61 D 61
             +
Sbjct:    74 E 74


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.141   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       69        69   0.00091  102 3  11 21  0.48    27
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  403 (43 KB)
  Total size of DFA:  70 KB (2062 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.85u 0.15s 8.00t   Elapsed:  00:00:01
  Total cpu time:  7.85u 0.15s 8.00t   Elapsed:  00:00:01
  Start:  Mon May 20 21:57:20 2013   End:  Mon May 20 21:57:21 2013

GO:0005737 "cytoplasm" evidence=ISM

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0030794 "(S)-coclaurine-N-methyltransferase activity" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XVIII0095	hypothetical protein (355 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XV.984.1	hypothetical protein (283 aa)	•		•						0.798
	eugene3.100440002	Predicted protein (291 aa)	•								0.558
	gw1.XI.908.1	SubName- Full=Putative uncharacterized protein; (281 aa)	•								0.518
	estExt_fgenesh4_pm.C_LG_XIV0228	hypothetical protein (327 aa)	•		•						0.474
	fgenesh4_pm.C_LG_VIII000723	hypothetical protein (862 aa)	•		•					•	0.417

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	69
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.75

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.75  E-value=4.5e-06  Score=62.38  Aligned_cols=56  Identities=7%  Similarity=-0.028  Sum_probs=45.9

Q ss_pred             hhhhhccCCChHHHH---HHHHHHHHHHHHhHHH---HHhhcccccHHHhHHHH-ccccCcccccchhh
Q 037116            2 LASLERNLLPDAVIR---RLCRKILADRLHSVII---ELRARPYVSLAVNLNFV-DMREMPIAINTDSC   63 (69)
Q Consensus         2 i~~~E~g~lPD~~iR---~gIR~Ll~~RL~~~~~---e~~~~~~~~~~~~~~fi-~Lr~~PIAi~td~A   63 (69)
                      |.++|+|++||.++|   .|||.++++++.+.+.   +...+.      .+.++ .|+..+|+...++.
T Consensus       123 ~~~~~~~~lpd~~~~~~~~~i~~~~~~~l~~~~~~~f~~~~~~------~~~~~~~Lr~~~I~~vl~a~  185 (433)
T 1u2z_A          123 IEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTKGFVNAINL------YNKMIREIPRQRIIDHLETI  185 (433)
T ss_dssp             HHHHHHTTCCTTHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHH------HHHHHTTSCHHHHHHHHTTC
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHH------HHHHHHHHhhccHHHHHHHH
Confidence            678999999999999   9999999999987665   444455      78899 99999987655543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00