Citrus Sinensis ID: 037129

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MNPVSIEIEEAPLLDSNREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSYA
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccHHccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHEEEEEEHHHHHccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccHHccccccccccccccHHHHHHHcccHHHHHHHHHccccHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccc
Coil and Loop (DISEMBL)
mnpvsieieeaplldsnreIKQQMDPIFfnaaaagnsepfkdMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLllqvnakddtplhvaakfghSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILtkedpdypysannygktplymaaESRSSNMVLALLENrtsvshegpngkTALHAAAMRSYA
Flexible Loop (DISEMBL)
MNPVSIEIEEAPLLDSNREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLtqheneelesrvgaaWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENrtsvshegpngktalHAAAMRSYA
Low Complexity Region (SEG)
MNPVSIEIEEAPLLDSNREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSYA
Disordered region (IsUnstruct)
**************************IFFN*****************IKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYM****************************************
Disordered Region (DISOPRED)
MNPVSIEIEEAPLLDSNREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSYA
Disordered Region (DISEMBL)
MNPVSIEIEEAPLLDSNREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSYA
Disordered Region (DISPRO)
MNPVSIEIEEAPLLDSNREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMR***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPVSIEIEEAPLLDSNREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIxxxxxxxxxxxxxxxxxxxxxVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
P16157	1881	Ankyrin-1 OS=Homo sapiens	yes	no	0.665	0.080	0.306	1e-08
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.594	0.257	0.278	2e-08
Q5DW34	1296	Histone-lysine N-methyltr	yes	no	0.590	0.103	0.285	2e-08
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.590	0.068	0.311	4e-08
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.590	0.030	0.311	5e-08
Q4R3S3	262	Ankyrin repeat domain-con	N/A	no	0.555	0.480	0.324	7e-08
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.484	0.027	0.333	1e-07
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	no	0.484	0.028	0.333	1e-07
Q92527	254	Ankyrin repeat domain-con	no	no	0.555	0.496	0.317	1e-07
Q9H9B1	1298	Histone-lysine N-methyltr	no	no	0.581	0.101	0.261	4e-07

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 25/176 (14%)

Query: 52  LTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDI 111
           L     +T LHI       E V      E  + C      +  K  TPLHVAAK+G   +
Sbjct: 498 LATTAGHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRV 551

Query: 112 VRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDP 171
              L+ER     H N                  K   T LH AV H N+D+V++L     
Sbjct: 552 AELLLER---DAHPN---------------AAGKNGLTPLHVAVHHNNLDIVKLLLPRG- 592

Query: 172 DYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSYA 227
             P+S    G TPL++AA+     +  +LL+   S + E   G T LH AA   +A
Sbjct: 593 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 648

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.
Homo sapiens (taxid: 9606)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 34/169 (20%)

Query: 81  ILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERA-----------KLTQHE---- 125
           ++E  P L    ++   T LH AA  GH +IV FL+++            K   H     
Sbjct: 110 LIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARN 169

Query: 126 ------NEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANN 179
                  + +E + G    ++   +K+  TALH AV  QN ++V++L + D     SA+N
Sbjct: 170 GHTVIVKKLIEKKAG----MVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADN 225

Query: 180 YGKTPLYMAAESRSSNMVLALLE----NRTSVSHEGPNG-----KTALH 219
            G TPL++A     + +V  +L+    +R +V+  G        KT LH
Sbjct: 226 KGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLH 274

Arabidopsis thaliana (taxid: 3702)

>sp|Q5DW34|EHMT1_MOUSE Histone-lysine N-methyltransferase EHMT1 OS=Mus musculus GN=Ehmt1 PE=1 SV=2

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 20/154 (12%)

Query: 91  QVNAKD---DTPLHVAAKFGHSDIVRFLVERAKL----------------TQHENEELES 131
           QV+ KD    T LH+AAK GH D+V++L+   ++                T++++ EL  
Sbjct: 829 QVDPKDAEGSTCLHLAAKKGHYDVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVELVK 888

Query: 132 RVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAES 191
            + +    I + + E+N  LH A     VD+ EIL     D  ++ N +G +PL++AA  
Sbjct: 889 LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARE 947

Query: 192 RSSNMVLALLENRTSVSHEGPNGKTALHAAAMRS 225
              + V+  L   + V+ +   G+T L  A++ S
Sbjct: 948 NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLSS 981

Histone methyltransferase that specifically mono- and dimethylates 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin. H3K9me represents a specific tag for epigenetic transcriptional repression by recruiting HP1 proteins to methylated histones. Also weakly methylates 'Lys-27' of histone H3 (H3K27me). Also required for DNA methylation, the histone methyltransferase activity is not required for DNA methylation, suggesting that these 2 activities function independently. Probably targeted to histone H3 by different DNA-binding proteins like E2F6, MGA, MAX and/or DP1. During G0 phase, it probably contributes to silencing of MYC- and E2F-responsive genes, suggesting a role in G0/G1 transition in cell cycle. In addition to the histone methyltransferase activity, also methylates non-histone proteins: mediates dimethylation of 'Lys-373' of p53/TP53.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 78/151 (51%), Gaps = 17/151 (11%)

Query: 90  LQVNAKDD-TPLHVAAKFGHSDIVRFLVER------AKLTQHENEELESRVG----AAWQ 138
           ++  AKDD TPLH++A+ G +DIV+ L+++      A  + +    L +R G    AA+ 
Sbjct: 475 VEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLAAREGHEDVAAFL 534

Query: 139 I-----IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRS 193
           +     + +T K+  T LH A  +  ++V  +L ++    P +A   G TPL++AA   +
Sbjct: 535 LDHGASLSITTKKGFTPLHVAAKYGKLEVASLLLQKSAS-PDAAGKSGLTPLHVAAHYDN 593

Query: 194 SNMVLALLENRTSVSHEGPNGKTALHAAAMR 224
             + L LL+   S      NG T LH AA +
Sbjct: 594 QKVALLLLDQGASPHAAAKNGYTPLHIAAKK 624

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 78/151 (51%), Gaps = 17/151 (11%)

Query: 90  LQVNAKDD-TPLHVAAKFGHSDIVRFLVER------AKLTQHENEELESRVG----AAWQ 138
           ++  AKDD TPLH++A+ G +DIV+ L+++      A  + +    L +R G    AA+ 
Sbjct: 492 VEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFL 551

Query: 139 I-----IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRS 193
           +     + +T K+  T LH A  +  ++V  +L ++    P +A   G TPL++AA   +
Sbjct: 552 LDHGASLSITTKKGFTPLHVAAKYGKLEVANLLLQKSAS-PDAAGKSGLTPLHVAAHYDN 610

Query: 194 SNMVLALLENRTSVSHEGPNGKTALHAAAMR 224
             + L LL+   S      NG T LH AA +
Sbjct: 611 QKVALLLLDQGASPHAAAKNGYTPLHIAAKK 641

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q4R3S3|ANKR7_MACFA Ankyrin repeat domain-containing protein 7 OS=Macaca fascicularis GN=ANKRD7 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 19/145 (13%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERA---------------KLTQHENEELESRV 133
           VN +D    TPLH+A   GH D+V FL+E+                K  Q +NE+  + +
Sbjct: 61  VNMQDKKYRTPLHLACANGHRDVVLFLIEQQCKINIRDSENKSPLIKAVQCQNEDCATIL 120

Query: 134 GAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRS 193
                   + +   NTALH AVC Q+  +VE L   + D   + N  G TPL +A  + +
Sbjct: 121 LNCGADPNLRDVRYNTALHYAVCGQSFSLVEQLLDYEADLE-AKNKDGYTPLLVAVINNN 179

Query: 194 SNMVLALLENRTSVSHEGPNGKTAL 218
             MV  LLE    V+      +TAL
Sbjct: 180 PKMVKFLLEKGADVNASDNYQRTAL 204

Macaca fascicularis (taxid: 9541)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 19/129 (14%)

Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
           TPLH+A++ GH+D+V  L+++               GA    I M+ K   T+LH A   
Sbjct: 664 TPLHLASQEGHTDMVTLLLDK---------------GAN---IHMSTKSGLTSLHLAAQE 705

Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA 217
             V+V +ILTK   D   +    G TPL +A    +  MV  LL+   +V+ +  NG T 
Sbjct: 706 DKVNVADILTKHGADQ-DAHTKLGYTPLIVACHYGNVKMVNFLLKQGANVNAKTKNGYTP 764

Query: 218 LHAAAMRSY 226
           LH AA + +
Sbjct: 765 LHQAAQQGH 773

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 19/129 (14%)

Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
           TPLH+A++ GH+D+V  L+++               GA    I M+ K   T+LH A   
Sbjct: 664 TPLHLASQEGHTDMVTLLLDK---------------GAN---IHMSTKSGLTSLHLAAQE 705

Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA 217
             V+V +ILTK   D   +    G TPL +A    +  MV  LL+   +V+ +  NG T 
Sbjct: 706 DKVNVADILTKHGADR-DAYTKLGYTPLIVACHYGNVKMVNFLLKQGANVNAKTKNGYTP 764

Query: 218 LHAAAMRSY 226
           LH AA + +
Sbjct: 765 LHQAAQQGH 773

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q92527|ANKR7_HUMAN Ankyrin repeat domain-containing protein 7 OS=Homo sapiens GN=ANKRD7 PE=2 SV=3

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 19/145 (13%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERA---------------KLTQHENEELESRV 133
           VN +D    TPLH+A   GH+D+V FL+E+                K  Q +NE+  + +
Sbjct: 52  VNMQDKKYRTPLHLACANGHTDVVLFLIEQQCKINVRDSENKSPLIKAVQCQNEDCATIL 111

Query: 134 GAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRS 193
                   + +   NT LH AVC Q++ +VE L + + D   + N  G TPL +A  + +
Sbjct: 112 LNFGADPDLRDIRYNTVLHYAVCGQSLSLVEKLLEYEADLE-AKNKDGYTPLLVAVINNN 170

Query: 194 SNMVLALLENRTSVSHEGPNGKTAL 218
             MV  LLE    V+      +TAL
Sbjct: 171 PKMVKFLLEKGADVNASDNYQRTAL 195

Homo sapiens (taxid: 9606)

>sp|Q9H9B1|EHMT1_HUMAN Histone-lysine N-methyltransferase EHMT1 OS=Homo sapiens GN=EHMT1 PE=1 SV=4

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 17/149 (11%)

Query: 93  NAKDDTPLHVAAKFGHSDIVRFLVERAKL----------------TQHENEELESRVGAA 136
           +A+  T LH+AAK GH ++V++L+   ++                T++++ +L   + + 
Sbjct: 836 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 895

Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
              I + + E+N  LH A     VD+ EIL     D  ++ N +G +PL++AA     + 
Sbjct: 896 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDC 954

Query: 197 VLALLENRTSVSHEGPNGKTALHAAAMRS 225
           V+  L   + V+ +   G+T L  A++ S
Sbjct: 955 VVLFLSRDSDVTLKNKEGETPLQCASLNS 983

Histone methyltransferase that specifically mono- and dimethylates 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin. H3K9me represents a specific tag for epigenetic transcriptional repression by recruiting HP1 proteins to methylated histones. Also weakly methylates 'Lys-27' of histone H3 (H3K27me). Also required for DNA methylation, the histone methyltransferase activity is not required for DNA methylation, suggesting that these 2 activities function independently. Probably targeted to histone H3 by different DNA-binding proteins like E2F6, MGA, MAX and/or DP1. During G0 phase, it probably contributes to silencing of MYC- and E2F-responsive genes, suggesting a role in G0/G1 transition in cell cycle. In addition to the histone methyltransferase activity, also methylates non-histone proteins: mediates dimethylation of 'Lys-373' of p53/TP53.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
224127081	227	predicted protein [Populus trichocarpa]	0.850	0.850	0.490	3e-43
224127098	399	predicted protein [Populus trichocarpa]	0.850	0.483	0.490	5e-43
255585399	575	ankyrin repeat-containing protein, putat	0.845	0.333	0.472	5e-43
224127104	405	predicted protein [Populus trichocarpa]	0.850	0.476	0.490	6e-43
224127106	575	predicted protein [Populus trichocarpa]	0.863	0.340	0.463	2e-42
224127079	394	predicted protein [Populus trichocarpa]	0.859	0.494	0.478	3e-42
224127089	217	predicted protein [Populus trichocarpa]	0.854	0.894	0.482	1e-41
224127093	281	predicted protein [Populus trichocarpa]	0.854	0.690	0.485	2e-41
224145572	395	predicted protein [Populus trichocarpa]	0.863	0.496	0.459	4e-41
224127096	219	predicted protein [Populus trichocarpa]	0.854	0.885	0.482	7e-41

>gi|224127081|ref|XP_002329387.1| predicted protein [Populus trichocarpa] gi|222870437|gb|EEF07568.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/204 (49%), Positives = 135/204 (66%), Gaps = 11/204 (5%)

Query: 24  MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILE 83
           MDP+ F AAA G+ +PF+      +  LLT   ENTILH+ + +Q RE   T FV  ILE
Sbjct: 13  MDPVLFKAAAEGDIDPFEKYQ-TCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVIILE 70

Query: 84  KCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMT 143
            CP LL Q N K + PLH+AA +GHS++V+ L++RAK    ++E   S V  A +++RMT
Sbjct: 71  MCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPTDSE---SGVTEAKKMLRMT 127

Query: 144 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAA------ESRSSNMV 197
           N+E++TALHEA  H+   VVEILTKEDP++PYSAN +G+TPLY+AA            +V
Sbjct: 128 NEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREERGKVV 187

Query: 198 LALLENRTSVSHEGPNGKTALHAA 221
             +L N  SV + GPNG+TAL+AA
Sbjct: 188 DGILGNCISVDYGGPNGRTALNAA 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127098|ref|XP_002329394.1| predicted protein [Populus trichocarpa] gi|222870444|gb|EEF07575.1| predicted protein [Populus trichocarpa]

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 100/204 (49%), Positives = 135/204 (66%), Gaps = 11/204 (5%)

Query: 24  MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILE 83
           MDP+ F AAA G+ +PF+      +  LLT   ENTILH+ + +Q RE   T FV  ILE
Sbjct: 7   MDPVLFKAAAEGDIDPFEKYQ-TCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVIILE 64

Query: 84  KCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMT 143
            CP LL Q N K + PLH+AA +GHS++V+ L++RAK    ++E   S V  A +++RMT
Sbjct: 65  MCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPTDSE---SGVTEAKKMLRMT 121

Query: 144 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAA------ESRSSNMV 197
           N+E++TALHEA  H+   VVEILTKEDP++PYSAN +G+TPLY+AA            +V
Sbjct: 122 NEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREEGGKVV 181

Query: 198 LALLENRTSVSHEGPNGKTALHAA 221
             +L N  SV + GPNG+TAL+AA
Sbjct: 182 DGILGNCISVDYGGPNGRTALNAA 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 95/201 (47%), Positives = 139/201 (69%), Gaps = 9/201 (4%)

Query: 28  FFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIIS-QERENVSTKFVAEILEKCP 86
            + AA  G  +PFK+ AG     LL    ++TILH+N+ S  ER   ST FV E L+ CP
Sbjct: 31  LYKAAEDGKIDPFKNFAGP--LDLLVTPIKDTILHLNLASPSER---STSFVKEALDMCP 85

Query: 87  LLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKE 146
            +LLQ+NA  DT LH+AA++GH DIV+ L+E    T+ ++++LES   A  Q++RMTNK 
Sbjct: 86  QILLQINADGDTLLHIAARYGHLDIVKLLIEH---TRAQHQDLESAGEAVRQMLRMTNKS 142

Query: 147 KNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTS 206
           K TALHEA  + + D+VE+L ++DPD+ +S+N++G+TPLY+A+E     +V+ +L+  TS
Sbjct: 143 KETALHEAARNDHPDLVELLIEQDPDFVHSSNDFGETPLYLASERGHLEVVVIMLKACTS 202

Query: 207 VSHEGPNGKTALHAAAMRSYA 227
           +++ GPNGKTALHAAAM  + 
Sbjct: 203 LAYGGPNGKTALHAAAMHRHG 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127104|ref|XP_002329397.1| predicted protein [Populus trichocarpa] gi|222870447|gb|EEF07578.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 100/204 (49%), Positives = 135/204 (66%), Gaps = 11/204 (5%)

Query: 24  MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILE 83
           MDP+ F AAA G+ +PF+      +  LLT   ENTILH+ + +Q RE   T FV  ILE
Sbjct: 13  MDPVLFKAAAEGDIDPFEKYQ-TCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVIILE 70

Query: 84  KCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMT 143
            CP LL Q N K + PLH+AA +GHS++V+ L++RAK    ++E   S V  A +++RMT
Sbjct: 71  MCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPTDSE---SGVTEAKKMLRMT 127

Query: 144 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAA------ESRSSNMV 197
           N+E++TALHEA  H+   VVEILTKEDP++PYSAN +G+TPLY+AA            +V
Sbjct: 128 NEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREERGKVV 187

Query: 198 LALLENRTSVSHEGPNGKTALHAA 221
             +L N  SV + GPNG+TAL+AA
Sbjct: 188 DGILGNCISVDYGGPNGRTALNAA 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/207 (46%), Positives = 134/207 (64%), Gaps = 11/207 (5%)

Query: 24  MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILE 83
           MDP+ F AA AGN  PF++     +  LLT   ENTILH+ + +Q  E  ST FV + LE
Sbjct: 1   MDPVLFKAAEAGNIGPFENYQTCSLNQLLTPD-ENTILHVYLKNQSSEPESTDFVDKFLE 59

Query: 84  KCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMT 143
           +CP LL Q N + +TPLH+ A++GHS++V+ L++RAK    +    ES V  A  ++RMT
Sbjct: 60  RCPPLLFQANKRGETPLHLEARYGHSNVVKVLIDRAKALPADP---ESGVTKAKMMLRMT 116

Query: 144 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAA-------ESRSSNM 196
           N+E++TALHEA  ++   VVEILTKEDP++ Y AN +G+TPLY+A              +
Sbjct: 117 NEEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAVSIGFLMFSEEHGKV 176

Query: 197 VLALLENRTSVSHEGPNGKTALHAAAM 223
           V  +L N  SV + GP+G+TALHAA+M
Sbjct: 177 VDGILGNCISVDYGGPDGRTALHAASM 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127079|ref|XP_002329386.1| predicted protein [Populus trichocarpa] gi|224127100|ref|XP_002329395.1| predicted protein [Populus trichocarpa] gi|222870436|gb|EEF07567.1| predicted protein [Populus trichocarpa] gi|222870445|gb|EEF07576.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 99/207 (47%), Positives = 136/207 (65%), Gaps = 12/207 (5%)

Query: 24  MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILE 83
           MDP+ F AA AGN  PF++     +  LLTA  ENTILH+ + +Q  E  ST FV + LE
Sbjct: 1   MDPVLFKAAEAGNIGPFENYQ-TSLNQLLTAD-ENTILHVYLKNQSSEPESTDFVDKFLE 58

Query: 84  KCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMT 143
           +CP LL Q N + +TPLH+AA+ GHS++V+ L++RAK       + ES V  A  ++RMT
Sbjct: 59  RCPPLLFQANKRGETPLHLAARNGHSNVVKVLIDRAKALP---ADPESGVTKAKMMLRMT 115

Query: 144 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAA-------ESRSSNM 196
           N+E++TALHEA  ++   VVEILTKEDP++ Y AN +G+TPLY+AA             +
Sbjct: 116 NEEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAASIGFLMFSEEHGKV 175

Query: 197 VLALLENRTSVSHEGPNGKTALHAAAM 223
           V  +L N  SV + GP+G+TALHAA+M
Sbjct: 176 VDGILGNCISVDYGGPDGRTALHAASM 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127089|ref|XP_002329390.1| predicted protein [Populus trichocarpa] gi|222870440|gb|EEF07571.1| predicted protein [Populus trichocarpa]

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/203 (48%), Positives = 136/203 (66%), Gaps = 9/203 (4%)

Query: 24  MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILE 83
           MDP+ F AA AGN  PF++     +  LLT   ENTILH+ + +Q RE  ST FV  ILE
Sbjct: 5   MDPLLFKAAEAGNIGPFENYQ-TRLNQLLTPD-ENTILHVYLGNQSREPESTDFVDIILE 62

Query: 84  KCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMT 143
            CP LLLQ N K + PLH+AA++GHS++V+ L++ AK       + ES +  A +++RM 
Sbjct: 63  MCPPLLLQANEKGEIPLHLAARYGHSNVVKVLIDCAKALP---TDPESGLTKAQKMLRMA 119

Query: 144 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAES----RSSNMVLA 199
           N+E++TALHEA  ++   +VEILTKEDP++ YSAN +G+TPLY+AA S        ++  
Sbjct: 120 NEEQDTALHEAARNRRSHLVEILTKEDPEFSYSANVHGETPLYIAAASSWGREREKVIDE 179

Query: 200 LLENRTSVSHEGPNGKTALHAAA 222
           +L N  SV + GPNG+TALHAA+
Sbjct: 180 ILTNCISVDYGGPNGRTALHAAS 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127093|ref|XP_002329392.1| predicted protein [Populus trichocarpa] gi|222870442|gb|EEF07573.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/202 (48%), Positives = 134/202 (66%), Gaps = 8/202 (3%)

Query: 24  MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILE 83
           MDP+ F AA AG+  PF++     +  LLT   ENTILH+ + +Q RE   T FV +ILE
Sbjct: 5   MDPVLFKAAEAGDIGPFENYQ-TCLDQLLTPD-ENTILHVYLGNQSREPEFTDFVDKILE 62

Query: 84  KCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMT 143
            CP LLLQ N K + PLH+AA++GHS++V  L+ERA+       + ES V  A +++RMT
Sbjct: 63  MCPPLLLQANKKGEIPLHLAARYGHSNVVGVLIERAEALP---TDPESGVSEAKKMLRMT 119

Query: 144 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSS---NMVLAL 200
           N E++TALHEA  +    VVEILT+EDP++ YSAN +G+TPLY+AA S       ++  +
Sbjct: 120 NDEQDTALHEAARNMRSHVVEILTEEDPEFSYSANVHGETPLYIAASSWGQEQEKVIDEI 179

Query: 201 LENRTSVSHEGPNGKTALHAAA 222
           L N  SV + GPNG+T LHAA+
Sbjct: 180 LANCISVDYGGPNGRTVLHAAS 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145572|ref|XP_002325691.1| predicted protein [Populus trichocarpa] gi|222862566|gb|EEF00073.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 97/211 (45%), Positives = 134/211 (63%), Gaps = 15/211 (7%)

Query: 24  MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILE 83
           M+P  + AA AGN  PFKD     +  LLT K +NTILH+ + +Q + + ST FV +I++
Sbjct: 1   MEPKLYKAAEAGNINPFKDRLPTSLNELLTPK-KNTILHVYLENQRKGSKSTDFVGQIID 59

Query: 84  KCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMT 143
            CP LLLQ N K + PLH AA++G S++VR L++RAK       +LES V  A +++RMT
Sbjct: 60  MCPPLLLQANKKGEIPLHFAARYGRSNVVRVLIDRAKA---RPTDLESGVTEAKKMLRMT 116

Query: 144 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAA-----------ESR 192
           N+EK+TALH A  +    VVEILTKEDP++ YS N +G+TPLY+AA           E  
Sbjct: 117 NEEKDTALHVAARNIQAQVVEILTKEDPEFSYSTNVHGETPLYIAANLRFNWRFKRHEEN 176

Query: 193 SSNMVLALLENRTSVSHEGPNGKTALHAAAM 223
              ++  +L N  SV + G +G+TALHAA M
Sbjct: 177 RKKVINEILSNCKSVEYCGSHGRTALHAAGM 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127096|ref|XP_002329393.1| predicted protein [Populus trichocarpa] gi|222870443|gb|EEF07574.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 99/205 (48%), Positives = 135/205 (65%), Gaps = 11/205 (5%)

Query: 24  MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILE 83
           MDP+ F AA AGN  PF++   +   + L    ENTILH+ + +Q  E  ST FV +ILE
Sbjct: 5   MDPVLFKAAEAGNIGPFEN--DQTCLNQLFTPDENTILHVCLGNQSSEPESTYFVDKILE 62

Query: 84  KCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMT 143
            CP LLLQ N K + PLH+AA++GHS++VR L++RA+       + ES V  A +++RMT
Sbjct: 63  MCPPLLLQANKKGEIPLHLAARYGHSNVVRVLIDRARARP---TDPESGVTEAKKMLRMT 119

Query: 144 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAE--SRSS----NMV 197
           N E++TALHEA  ++   VVEILTKEDP + YSAN + +TPLY+AA   SR S     +V
Sbjct: 120 NVEQDTALHEAARNRRGHVVEILTKEDPYFSYSANVHEETPLYIAASIVSRPSKELRKVV 179

Query: 198 LALLENRTSVSHEGPNGKTALHAAA 222
             +L N  SV + GPNG+TALH ++
Sbjct: 180 NEILRNCISVDYGGPNGRTALHGSS 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.748	0.244	0.300	2.4e-13
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.806	0.319	0.302	3.7e-13
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.841	0.297	0.282	5.3e-12
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.832	0.306	0.301	6.4e-12
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.748	0.253	0.286	1.7e-10
ZFIN|ZDB-GENE-081104-19	1929	si:ch211-173b16.3 "si:ch211-17	0.546	0.064	0.3	2.1e-10
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.634	0.269	0.298	1.5e-09
ZFIN|ZDB-GENE-091113-6	1923	si:ch211-263m18.3 "si:ch211-26	0.590	0.069	0.339	8.2e-09
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.863	0.360	0.296	1.2e-08
UNIPROTKB|P16157	1881	ANK1 "Ankyrin-1" [Homo sapiens	0.837	0.101	0.301	5.8e-08

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 55/183 (30%), Positives = 94/183 (51%)

Query:    23 QMDPIFFNAAAAGNSEPFKDMAGEEIK-SLLTAKTENTILHINIISQERENVSTKFVAEI 81
             +M P  F+  + GN E  + +    I  + + + T ++ILH+ +     E      V EI
Sbjct:    97 RMIPEVFSKISDGNKECLEKLRSRGISVARIKSNTGDSILHLAVTWGHLE-----LVKEI 151

Query:    82 LEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHE--NEELESRVGAAWQI 139
             + +CP LLL+ N+   TPLHVAA  GH+ IV   V     +     NEE E R+     +
Sbjct:   152 VCECPRLLLEQNSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESE-RMNP--YV 208

Query:   140 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLA 199
             ++  +K+ NTAL+ A+  +  ++   L   + D P+  N YG + L++A  +   ++V A
Sbjct:   209 LK--DKDGNTALYYAIEGRYFEMAVCLVNANQDAPFLGNKYGVSSLFVAINTGDVSLVKA 266

Query:   200 LLE 202
             +L+
Sbjct:   267 ILK 269

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.7e-13, P = 3.7e-13
 Identities = 58/192 (30%), Positives = 92/192 (47%)

Query:    23 QMDPIFFNAAAAGNSEPFKDMAGEEIK-SLLTAKTENTILHINIISQERENVSTKFVAEI 81
             QM+   F+  + G+ E  + + G     + L +   +++LH+       E      V  I
Sbjct:    80 QMNTEVFSGLSDGDKECLEMLKGVGTPMACLKSDRGDSVLHLAARWGHLE-----LVKNI 134

Query:    82 LEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIR 141
             + +CP L+L++N KD  PLHVAA  GHS IV  LV           E E R      ++R
Sbjct:   135 ISECPCLVLELNFKDQLPLHVAAHAGHSAIVEALVASVTFFSDRLAE-EDRERLNPYVLR 193

Query:   142 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL 201
               +K  NTALH A+  + +++   L  E+ +  +  NN G + LYMA E+    +V  +L
Sbjct:   194 --DKYGNTALHLAIEGRYMEMAASLVNENQNASFLENNEGISSLYMAVEAGDVTLVKEIL 251

Query:   202 ENRTSVSHEGPN 213
             +   +   EG N
Sbjct:   252 KTAGNNDLEGRN 263

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 5.3e-12, P = 5.3e-12
 Identities = 57/202 (28%), Positives = 97/202 (48%)

Query:    24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILE 83
             M+P  F+A  AGN +    M       L   + E     +++ +        + V  I+ 
Sbjct:    36 MNPEIFSAMRAGNVKFLDKMKTNNNTPLACFRNETGDFTLHLAAAWGR---LELVKRIVS 92

Query:    84 KCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERA-KLTQHENEELESRVGAAWQIIRM 142
             +CP LLL+ N+KD  PLH AA  G   +V   V R  +++   +EE   RV     +  M
Sbjct:    93 ECPCLLLETNSKDQIPLHAAAAAGRLAVVEAFVARVNEISDGLSEEERERVN----LYAM 148

Query:   143 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL- 201
              + + NTALH A+   ++     L K +    + ANN+G +PL+ A  + S  +V A++ 
Sbjct:   149 KDIDGNTALHLALKGGHLKTAACLVKANHLASFLANNHGVSPLFTAIIAGSLTLVEAMMY 208

Query:   202 -ENRT-SVSHEGPNGKTALHAA 221
                +T +++ +    K+ +HAA
Sbjct:   209 VPGQTCNLASKLEGRKSLVHAA 230

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 63/209 (30%), Positives = 100/209 (47%)

Query:    17 NREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIK--SLLTAKTENTILHINIISQERENVS 74
             +++  + M+P    A  AG+         +++K    L     N+ILHI   +    +V 
Sbjct:    30 DKDESEIMNPAILCAVRAGDKVSLLKRINDDVKVTQRLVDNQGNSILHI---AAALGHVH 86

Query:    75 TKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVG 134
                V  I+   P LL  VN   +T LHVAA+ G  +IV  LV    +T  E+   ++ + 
Sbjct:    87 --IVEFIISTFPNLLQNVNLMGETTLHVAARAGSLNIVEILVRF--IT--ESSSYDAFIA 140

Query:   135 AAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSS 194
             A        +K  +TALH A+  ++V+V   L     D  +  NN   +PLYMA E+   
Sbjct:   141 AK-------SKNGDTALHAALKGKHVEVAFCLVSVKHDVSFDKNNDEASPLYMAVEAGYH 193

Query:   195 NMVLALLENRTSVSHEGP--NGKTALHAA 221
              +VL +LE+ +S S      +GK+ +HAA
Sbjct:   194 ELVLKMLESSSSPSILASMFSGKSVIHAA 222

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 53/185 (28%), Positives = 89/185 (48%)

Query:    23 QMDPIFFNAAAAGNSEPFKDMAGEEIK-SLLTAKTENTILHINIISQERENVSTKFVAEI 81
             +M P  F   + G  E  + +         + + T ++ILHI       E      V EI
Sbjct:    66 EMTPEIFGGMSNGEKECLEKLRSNGTPMERVKSNTGDSILHIAAKWGHLE-----LVKEI 120

Query:    82 LEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVER--AKLTQHENEELESRVGAAWQI 139
             + +CP LL + N+   TPLHVA   GH+ +V  LV    + L     EE E   G    +
Sbjct:   121 IFECPCLLFEQNSSRQTPLHVATHGGHTKVVEALVASVTSALASLSTEESE---GLNPHV 177

Query:   140 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAES--RSSNMV 197
             ++  +++ NTAL+ A+  + +++   L   D D P+  NN G + LY A ++  +  ++V
Sbjct:   178 LK--DEDGNTALYYAIEGRYLEMATCLVNADKDAPFLGNNKGISSLYEAVDAGNKFEDLV 235

Query:   198 LALLE 202
              A+L+
Sbjct:   236 KAILK 240

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

ZFIN|ZDB-GENE-081104-19 si:ch211-173b16.3 "si:ch211-173b16.3" [Danio rerio (taxid:7955)]

 Score = 146 (56.5 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
 Identities = 42/140 (30%), Positives = 71/140 (50%)

Query:    98 TPLHVAAKFGHSDIVRFLVE-RAKLTQHENE-----ELESRVGAAWQIIRMTNKEKN--- 148
             TPLH+AA+ GH+     L++  A+LT+   +      + ++ G     + +  +  N   
Sbjct:   498 TPLHIAAREGHTQTASILLDMNAQLTKMTKKGFTPLHVAAKYGKVDVAVLLLERGANPNA 557

Query:   149 ------TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE 202
                   T LH AV H N+DVV +L  +    P+SA   G TPL++A++   + +  +LL+
Sbjct:   558 AGKVGLTPLHVAVHHNNLDVVNLLLSKGGS-PHSAARNGYTPLHIASKQNQAEVASSLLQ 616

Query:   203 NRTSVSHEGPNGKTALHAAA 222
             +  S + E   G T LH A+
Sbjct:   617 HGASANAESLQGVTPLHLAS 636

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 45/151 (29%), Positives = 72/151 (47%)

Query:    76 KFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGA 135
             + V +I+E  P L+   N K DTPLH+AA+ GH+ I+  ++E    T    E LE  V  
Sbjct:    41 ELVKKIVEIHPSLVSSTNTKSDTPLHLAARLGHTSILLLMLES---TAESIESLEETVPN 97

Query:   136 AWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDP-DYPYSANNYGKTPLYMAAESRSS 194
               ++  M NK+  T LH AV + +V+ +     + P  +        +T  ++AA  +  
Sbjct:    98 DLKLAEMVNKDGFTPLHCAVMNGSVETLTAFINKAPLSFDSVTLQTSETVFHLAARHKKM 157

Query:   195 NMVLALLEN---RTSVSHEGPNGKTALHAAA 222
                + + +N   R  +      G T LHAAA
Sbjct:   158 EAFIFMAKNANLRRLLYELDGEGNTVLHAAA 188

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-091113-6 si:ch211-263m18.3 "si:ch211-263m18.3" [Danio rerio (taxid:7955)]

 Score = 158 (60.7 bits), Expect = 8.2e-09, P = 8.2e-09
 Identities = 52/153 (33%), Positives = 75/153 (49%)

Query:    90 LQVNAKDD-TPLHVAAKFGHSDIVRFLVER------AKLTQHENEELESRVGAAW----- 137
             +   AKDD TPLH AA+ GH ++V+ L+E       A    H    + +R G A      
Sbjct:   496 VDAKAKDDQTPLHCAARMGHKELVKLLMEHKANPDSATTAGHTPLHIAAREGHAQTTRIL 555

Query:   138 -----QIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESR 192
                  Q  +MT K+  T LH A  +  VDVVE+L +   + P +A   G TPL++A    
Sbjct:   556 LDENAQQTKMT-KKGFTPLHVACKYGKVDVVELLLERGAN-PNAAGKNGLTPLHVAVHHN 613

Query:   193 SSNMVLALLENRTSVSHEGPNGKTALHAAAMRS 225
             + ++V  L+    S      NG TALH AA ++
Sbjct:   614 NLDVVKLLVSKGGSPHSTARNGYTALHIAAKQN 646

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 65/219 (29%), Positives = 99/219 (45%)

Query:    22 QQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEI 81
             Q  +   + AA  G+ E  K+M      +L+  K  N     +I +++ +    K +AE 
Sbjct:    64 QSGETALYVAAEYGDVEIVKEMINCYDLALVEIKARNGFDAFHIAAKQGDLDVLKVLAEA 123

Query:    82 LEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVE-----------RAKLTQHENEE-- 128
               +   L + V+  + T LH AA  GH+++V FL+E             K   H      
Sbjct:   124 HSE---LAMTVDLSNTTALHTAATQGHTEVVNFLLELGSSLAGIAKSNGKTALHSASRNG 180

Query:   129 ----LESRVGAAWQI-IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKT 183
                 +++ + +   I IRM +K+  TALH AV   NV+VVE L K D      A+  G T
Sbjct:   181 HVKVIKALLASEPAIAIRM-DKKGQTALHMAVKGTNVEVVEELIKADRSSINIADTKGNT 239

Query:   184 PLYMAAESRSSNMV-LALLENRTSVSHEGPNGKTALHAA 221
              L++AA    S +V L L  N T       +G+TAL  A
Sbjct:   240 ALHIAARKGRSQIVKLLLANNMTDTKAVNRSGETALDTA 278

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P16157 ANK1 "Ankyrin-1" [Homo sapiens (taxid:9606)]

 Score = 152 (58.6 bits), Expect = 5.8e-08, P = 5.8e-08
 Identities = 64/212 (30%), Positives = 96/212 (45%)

Query:    31 AAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLL 90
             AA AG++E  K +   + K    AK + T LH       R    T  V  +LE      L
Sbjct:   444 AARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHC----AARIG-HTNMVKLLLENNANPNL 498

Query:    91 QVNAKDDTPLHVAAKFGHSDIVRFLVER--AKLTQHENEELESRVGAAWQIIRMTN---- 144
                A   TPLH+AA+ GH + V  L+E+  ++    +       V A +  +R+      
Sbjct:   499 ATTA-GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 557

Query:   145 KE-------KN--TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSN 195
             ++       KN  T LH AV H N+D+V++L       P+S    G TPL++AA+     
Sbjct:   558 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVE 616

Query:   196 MVLALLENRTSVSHEGPNGKTALHAAAMRSYA 227
             +  +LL+   S + E   G T LH AA   +A
Sbjct:   617 VARSLLQYGGSANAESVQGVTPLHLAAQEGHA 648

GO:0007165 "signal transduction" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0016529 "sarcoplasmic reticulum" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0005198 "structural molecule activity" evidence=NAS

GO:0007010 "cytoskeleton organization" evidence=NAS

GO:0030507 "spectrin binding" evidence=IDA;NAS;IPI

GO:0016323 "basolateral plasma membrane" evidence=NAS

GO:0008093 "cytoskeletal adaptor activity" evidence=IDA;TAS

GO:0045199 "maintenance of epithelial cell apical/basal polarity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=TAS;IPI

GO:0005856 "cytoskeleton" evidence=NAS

GO:0006887 "exocytosis" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0014731 "spectrin-associated cytoskeleton" evidence=IDA

GO:0051117 "ATPase binding" evidence=IPI

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.01200013	hypothetical protein (227 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_scaffold_7044000001	annotation not avaliable (189 aa)			•						0.447
	grail3.0631000101	hypothetical protein (186 aa)			•						0.434
	fgenesh4_pg.C_scaffold_232000016	hypothetical protein (169 aa)			•						0.416

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	227
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 88.2 bits (219), Expect = 2e-22
 Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 19/136 (13%)

Query: 91  QVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTA 150
             +    TPLH+AA  GH ++V+ L+E                GA    +   + +  T 
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLEN---------------GA---DVNAKDNDGRTP 43

Query: 151 LHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHE 210
           LH A  + ++++V++L ++  D   + +  G TPL++AA + + ++V  LL++   V+  
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR 102

Query: 211 GPNGKTALHAAAMRSY 226
             +G+T LH AA   +
Sbjct: 103 DKDGRTPLHLAAKNGH 118

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 78.2 bits (193), Expect = 1e-18
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 31/147 (21%)

Query: 58  NTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRF 114
            T LH+   +   E V       +LE        VNAKD+   TPLH+AAK GH +IV+ 
Sbjct: 8   RTPLHLAASNGHLEVVK-----LLLENGA----DVNAKDNDGRTPLHLAAKNGHLEIVKL 58

Query: 115 LVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYP 174
           L+E+               GA    +   +K+ NT LH A  + N+DVV++L K   D  
Sbjct: 59  LLEK---------------GA---DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD-V 99

Query: 175 YSANNYGKTPLYMAAESRSSNMVLALL 201
            + +  G+TPL++AA++    +V  LL
Sbjct: 100 NARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.3 bits (147), Expect = 3e-12
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 21/104 (20%)

Query: 100 LHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQN 159
           LH+AAK G+ ++V+ L+E+               GA      +   + +TALH A  + N
Sbjct: 1   LHLAAKNGNLELVKLLLEK---------------GA-----DVNLGDTDTALHLAARNGN 40

Query: 160 VDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN 203
           +++V++L +   D   + +  G T L++AA + +  +V  LLE+
Sbjct: 41  LEIVKLLLEHGAD-VNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 54.2 bits (131), Expect = 5e-10
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 19/82 (23%)

Query: 92  VNAKD-DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTA 150
           VN  D DT LH+AA+ G+ +IV+ L+E                GA    +   +K+ NTA
Sbjct: 23  VNLGDTDTALHLAARNGNLEIVKLLLEH---------------GAD---VNAKDKDGNTA 64

Query: 151 LHEAVCHQNVDVVEILTKEDPD 172
           LH A  + N+++V++L +   D
Sbjct: 65  LHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 151 LHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHE 210
           LH A  + N+++V++L ++  D      +   T L++AA + +  +V  LLE+   V+ +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 211 GPNGKTALHAAAMR 224
             +G TALH AA  
Sbjct: 58  DKDGNTALHLAARN 71

Length = 91

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 46.0 bits (109), Expect = 7e-06
 Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 21/129 (16%)

Query: 95  KDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEA 154
           K +T LH A +     +   L+                 GA   I   TN   N+ LH A
Sbjct: 167 KGNTALHYATENKDQRLTELLLSY---------------GANVNIPDKTN---NSPLHHA 208

Query: 155 VCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLA-LLENRTSVSHEGP- 212
           V H N  +V IL  E+     + +  G TPL+++        +L  LLE+   V+ +   
Sbjct: 209 VKHYNKPIVHILL-ENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYI 267

Query: 213 NGKTALHAA 221
            G TALH++
Sbjct: 268 LGLTALHSS 276

Length = 477

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 42/209 (20%), Positives = 71/209 (33%), Gaps = 26/209 (12%)

Query: 25  DPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEK 84
                +A    N      +    +  L    +  +   +N+  +     +      +L+ 
Sbjct: 1   SKPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKL 60

Query: 85  C-PLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMT 143
                L   +     PLH AA  G   IV+ L+                 GA    +   
Sbjct: 61  IVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLAS---------------GAD---VNAK 102

Query: 144 NKEKNTALHEAV-----CHQNVDVVEIL--TKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
           + + +T LH A         N++V ++L     D D     +  G TPL+ AA +  +++
Sbjct: 103 DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADI 162

Query: 197 VLALLENRTSVSHEGPNGKTALHAAAMRS 225
           V  LLE     +     G TAL  AA   
Sbjct: 163 VELLLEAGADPNSRNSYGVTALDPAAKNG 191

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 21/117 (17%)

Query: 91  QVNAKDDTPLHVAAKFGHS-----DIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNK 145
             +A  DTPLH+AA  G+      ++ + L+E                GA   +  + ++
Sbjct: 101 AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA---------------GADLDVNNLRDE 145

Query: 146 EKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE 202
           + NT LH A  + + D+VE+L +   D P S N+YG T L  AA++    +V  LL+
Sbjct: 146 DGNTPLHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLD 201

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 41/233 (17%)

Query: 2   NPVSIEIEEA--PLLDSNREIKQQMDPIFFNAAAAGNS----------EPFKDMAGEEIK 49
           N ++I ++E   PL+D+ R    ++  +F    A  N              K  A + IK
Sbjct: 26  NCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIK 85

Query: 50  SLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHS 109
            L+    + +IL I  I  E++ + T     IL+ C + +   +A+  T LH A K G  
Sbjct: 86  LLIDNGVDTSILPIPCI--EKDMIKT-----ILD-CGIDVNIKDAELKTFLHYAIKKGDL 137

Query: 110 DIVRFLVE-RAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
           + ++ L E  A                    + + +      +H A+ H   D++++L  
Sbjct: 138 ESIKMLFEYGAD-------------------VNIEDDNGCYPIHIAIKHNFFDIIKLLL- 177

Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAA 221
           E   Y    +N G++PL+ AAE      +  L+++   + ++  NG T LH A
Sbjct: 178 EKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA 230

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 18/70 (25%)

Query: 97  DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC 156
            T LH AA  G  ++V++L+E+                     I  T+++ NTALH A  
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVD------------------INRTDEDGNTALHIAAE 43

Query: 157 HQNVDVVEIL 166
           + N++V+++L
Sbjct: 44  NGNLEVLKLL 53

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 32/138 (23%), Positives = 65/138 (47%), Gaps = 8/138 (5%)

Query: 91  QVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQ------HENEELESRVGAAWQIIRMTN 144
            +N K   PL  A K G  DI++ L++    T        E + +++ +     +  + +
Sbjct: 63  HINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDV-NIKD 121

Query: 145 KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENR 204
            E  T LH A+   +++ +++L +   D     +N G  P+++A +    +++  LLE  
Sbjct: 122 AELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDN-GCYPIHIAIKHNFFDIIKLLLEKG 180

Query: 205 TSVSHEGPNGKTALHAAA 222
              + +  NG++ LH AA
Sbjct: 181 AYANVKDNNGESPLHNAA 198

Length = 434

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 16/56 (28%), Positives = 28/56 (50%)

Query: 166 LTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAA 221
           L +  P    + +  G TPL++AA+  +  +V  LL+    ++    +G TAL  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 11/22 (50%), Positives = 18/22 (81%)

Query: 97  DTPLHVAAKFGHSDIVRFLVER 118
           +TPLH+AA+ GH ++V+ L+E 
Sbjct: 3   NTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 81  ILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVER 118
           +LE  P+ L   +   +TPLH+AAK+G  ++V++L++ 
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP 38

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 92  VNAKDDTPLHVAAKFGHSD--IVRFLVER-AKLTQHENEELESRVGAAWQIIRMTNKEKN 148
            N+  +  LH+  +    D  I++ L+++   +            G     I + +    
Sbjct: 137 KNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVP---INIKDVYGF 193

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           T LH AV + N + V+ L     + P   N YG TPL++A  + +  +   LL N  S+ 
Sbjct: 194 TPLHYAVYNNNPEFVKYLLDLGAN-PNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK 252

Query: 209 H 209
            
Sbjct: 253 T 253

Length = 422

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 140 IRMTNKEK-NTALHEAVCHQNVDVVE--ILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
           I M ++ K NTALH A  +++  + E  +    + + P   NN    PL+ A +  +  +
Sbjct: 160 INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNS---PLHHAVKHYNKPI 216

Query: 197 VLALLENRTSVSHEGPNGKTALHAAAMR 224
           V  LLEN  S       G T LH +   
Sbjct: 217 VHILLENGASTDARDKCGNTPLHISVGY 244

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL 201
            TALH+A     +++V+ L ++  D     +  G T L++AAE+ +  ++  LL
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 32/181 (17%)

Query: 52  LTAKTENTILHINIISQERENVSTKFVAEILEKCPL----LLLQ----VNAKDDT---PL 100
           +      TIL   I    ++     F+   ++K  L    +L +    VN +DD    P+
Sbjct: 102 IEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPI 161

Query: 101 HVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNV 160
           H+A K    DI++ L+E+               GA      + +    + LH A  + + 
Sbjct: 162 HIAIKHNFFDIIKLLLEK---------------GA---YANVKDNNGESPLHNAAEYGDY 203

Query: 161 DVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHA 220
             +++L            N G TPL+ A     S   + LL N  S++ +  +G T LH 
Sbjct: 204 ACIKLLIDHGNHIMNKCKN-GFTPLHNAIIHNRS--AIELLINNASINDQDIDGSTPLHH 260

Query: 221 A 221
           A
Sbjct: 261 A 261

Length = 434

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.98
PHA02946	446	ankyin-like protein; Provisional	99.98
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.96
KOG0510	929	consensus Ankyrin repeat protein [General function	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.95
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02730	672	ankyrin-like protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.91
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.91
PHA02730	672	ankyrin-like protein; Provisional	99.91
PHA02917	661	ankyrin-like protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
PHA02884	300	ankyrin repeat protein; Provisional	99.9
PHA02792	631	ankyrin-like protein; Provisional	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.89
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.89
PHA02792	631	ankyrin-like protein; Provisional	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02741	169	hypothetical protein; Provisional	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.88
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.88
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.84
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.84
KOG0514	452	consensus Ankyrin repeat protein [General function	99.84
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.82
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.79
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.76
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.76
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.73
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.71
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.65
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.64
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.61
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.59
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.58
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.56
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.54
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.49
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.49
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.48
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.48
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.47
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.44
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.44
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.37
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.14
PF13606	30	Ank_3: Ankyrin repeat	99.04
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.98
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.95
PF13606	30	Ank_3: Ankyrin repeat	98.91
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.89
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.87
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.81
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.81
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.8
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.77
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.69
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.68
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.65
KOG0522	560	consensus Ankyrin repeat protein [General function	98.57
KOG0522	560	consensus Ankyrin repeat protein [General function	98.48
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.41
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.35
KOG2384	223	consensus Major histocompatibility complex protein	98.32
KOG0511	516	consensus Ankyrin repeat protein [General function	98.21
KOG0511	516	consensus Ankyrin repeat protein [General function	98.15
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.0
KOG2384	223	consensus Major histocompatibility complex protein	97.99
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.99
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.82
KOG2505	591	consensus Ankyrin repeat protein [General function	97.54
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.4
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.31
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.16
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.85
KOG2505	591	consensus Ankyrin repeat protein [General function	95.94
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.9
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.8
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.89
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.73
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.3

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.8e-38  Score=208.96  Aligned_cols=181  Identities=23%  Similarity=0.264  Sum_probs=162.8

Q ss_pred             chhhhccCCHHHHHHHhcCCchHHHhhHh-hhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCC
Q 037129           17 NREIKQQMDPIFFNAAAAGNSEPFKDMAG-EEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAK   95 (227)
Q Consensus        17 ~~~~~~~~~~~l~~a~~~g~~~~v~~ll~-~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   95 (227)
                      +..+.++..+|||+||..|+.++|.+|++ .++.++.+|..|+||||+|  +..|+.++|+.|+.   +.+.++|..+..
T Consensus        31 ~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia--~s~g~~evVk~Ll~---r~~advna~tn~  105 (226)
T KOG4412|consen   31 NARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIA--ASNGNDEVVKELLN---RSGADVNATTNG  105 (226)
T ss_pred             hccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhh--hhcCcHHHHHHHhc---CCCCCcceecCC
Confidence            34556677788999999999999999995 6788888888999999999  99999999998887   447889999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCc
Q 037129           96 DDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPY  175 (227)
Q Consensus        96 g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~  175 (227)
                      |+|+||+|+-.|..+|+++|+++|+.+..                  +|..|+||||.|+.-|..+++++|+..|+.. +
T Consensus       106 G~T~LHyAagK~r~eIaqlLle~ga~i~~------------------kD~~~qtplHRAAavGklkvie~Li~~~a~~-n  166 (226)
T KOG4412|consen  106 GQTCLHYAAGKGRLEIAQLLLEKGALIRI------------------KDKQGQTPLHRAAAVGKLKVIEYLISQGAPL-N  166 (226)
T ss_pred             CcceehhhhcCChhhHHHHHHhcCCCCcc------------------cccccCchhHHHHhccchhhHHHHHhcCCCC-C
Confidence            99999999999999999999999988654                  8999999999999999999999999999884 4


Q ss_pred             ccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Q 037129          176 SANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA  222 (227)
Q Consensus       176 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  222 (227)
                      .+|..|.||||.|...++.++..+|+++|++++..|+.| ||+..|+
T Consensus       167 ~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  167 TQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             cccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHH
Confidence            899999999999988999999999999999999999988 9987775

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.1e-37  Score=203.51  Aligned_cols=178  Identities=18%  Similarity=0.176  Sum_probs=158.8

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhh-ccc-cccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEI-KSL-LTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHV  102 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~-~~~-~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~  102 (227)
                      ..+.+.+++......++.+++... +.+ ..|.+|.||||+|  +..|+.+++.+|++   ..+..++.+|..||||||.
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa--~S~g~~eiv~fLls---q~nv~~ddkDdaGWtPlhi   78 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWA--CSFGHVEIVYFLLS---QPNVKPDDKDDAGWTPLHI   78 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeee--eecCchhHHHHHHh---cCCCCCCCccccCCchhhh
Confidence            345778888888999999998666 555 4555899999999  99999999999998   2356678889999999999


Q ss_pred             HHHcCCHHHHHHHHHh-hhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCC
Q 037129          103 AAKFGHSDIVRFLVER-AKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYG  181 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~  181 (227)
                      ||..|+.++|+.|+.+ |++.+.                  .+..|+||||+|+..|..+++++|++.|+.+ ..+|..|
T Consensus        79 a~s~g~~evVk~Ll~r~~advna------------------~tn~G~T~LHyAagK~r~eIaqlLle~ga~i-~~kD~~~  139 (226)
T KOG4412|consen   79 AASNGNDEVVKELLNRSGADVNA------------------TTNGGQTCLHYAAGKGRLEIAQLLLEKGALI-RIKDKQG  139 (226)
T ss_pred             hhhcCcHHHHHHHhcCCCCCcce------------------ecCCCcceehhhhcCChhhHHHHHHhcCCCC-ccccccc
Confidence            9999999999999999 777654                  7899999999999999999999999999884 4999999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          182 KTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       182 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      .||||.|+.-|..+++++|++.|+.++.+|..|.||||.|..-|+
T Consensus       140 qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~  184 (226)
T KOG4412|consen  140 QTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGH  184 (226)
T ss_pred             CchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccC
Confidence            999999999999999999999999999999999999999955444

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.7e-35  Score=216.72  Aligned_cols=175  Identities=17%  Similarity=0.116  Sum_probs=151.1

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHV  102 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~  102 (227)
                      .+.+|||+|+..|+.++++.|++.|.+++..  .|.||||+|  +..|+.+++++|++.    +.+++.++..|+||||+
T Consensus        29 ~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~--d~~TpLh~A--a~~g~~eiV~lLL~~----Gadvn~~d~~G~TpLh~  100 (284)
T PHA02791         29 HGHSALYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQA--ATLEDTKIVKILLFS----GMDDSQFDDKGNTALYY  100 (284)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC--CCCCHHHHH--HHCCCHHHHHHHHHC----CCCCCCCCCCCCCHHHH
Confidence            3566799999999999999999999886654  478999999  999999999999985    77888999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCC-CcHHHHHHhcCCHHHHHHHHhcCCCCCcccc-cC
Q 037129          103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK-NTALHEAVCHQNVDVVEILTKEDPDYPYSAN-NY  180 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~-~~  180 (227)
                      |+..|+.+++++|+++|+..+.                  ++..| .||||+|+..|+.+++++|++.+++.   .+ ..
T Consensus       101 Aa~~g~~eivk~Ll~~gadin~------------------~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~---~d~~~  159 (284)
T PHA02791        101 AVDSGNMQTVKLFVKKNWRLMF------------------YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAI  159 (284)
T ss_pred             HHHcCCHHHHHHHHHCCCCcCc------------------cCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc---ccccc
Confidence            9999999999999999987654                  45566 48999999999999999999877653   22 24


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCH-HHHHHHhcC
Q 037129          181 GKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA-LHAAAMRSY  226 (227)
Q Consensus       181 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~a~~~~~  226 (227)
                      |.||||+|+..|+.+++++|+++|++++.++..|.|| ||+|+.+|+
T Consensus       160 g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~  206 (284)
T PHA02791        160 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD  206 (284)
T ss_pred             CccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCC
Confidence            7899999999999999999999999999998888876 899998876

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.6e-33  Score=220.45  Aligned_cols=180  Identities=21%  Similarity=0.181  Sum_probs=139.6

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHV  102 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~  102 (227)
                      .+.+|||.|+..|+.+++++|++.|.+++..+..+.||||.|  +..|+.+++++|++...   ...+..+..|.||||+
T Consensus        34 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~~~~---~~~~~~~~~g~tpL~~  108 (413)
T PHA02875         34 DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDA--VEEGDVKAVEELLDLGK---FADDVFYKDGMTPLHL  108 (413)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHH--HHCCCHHHHHHHHHcCC---cccccccCCCCCHHHH
Confidence            345568888888888888888887777776666777888888  78888888777776521   1123345567888888


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCC
Q 037129          103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGK  182 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~  182 (227)
                      |+..|+.+++++|+++|+.++.                  .+..|.||||+|+..|+.+++++|++.|+++. ..+..|.
T Consensus       109 A~~~~~~~iv~~Ll~~gad~~~------------------~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~  169 (413)
T PHA02875        109 ATILKKLDIMKLLIARGADPDI------------------PNTDKFSPLHLAVMMGDIKGIELLIDHKACLD-IEDCCGC  169 (413)
T ss_pred             HHHhCCHHHHHHHHhCCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCC
Confidence            8888888888888888877654                  56788888888888888888888888888744 6788888


Q ss_pred             CHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCC-CHHHHHHHhcC
Q 037129          183 TPLYMAAESRSSNMVLALLENRTSVSHEGPNGK-TALHAAAMRSY  226 (227)
Q Consensus       183 t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~a~~~~~  226 (227)
                      ||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+.+|+
T Consensus       170 TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~  214 (413)
T PHA02875        170 TPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNK  214 (413)
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCC
Confidence            888888888888888888888888888887774 78888888775

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6e-33  Score=221.72  Aligned_cols=182  Identities=18%  Similarity=0.191  Sum_probs=154.5

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHH-------------------H
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEIL-------------------E   83 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~-------------------~   83 (227)
                      ...+|||.|+..|+.++|++|++.|++++..+..|.||||.|  +..|+.+++++|++.+                   .
T Consensus        34 ~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A--~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll  111 (434)
T PHA02874         34 ETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTA--IKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTIL  111 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHH
Confidence            456789999999999999999999999998888999999999  9999999999998753                   2


Q ss_pred             hCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHH
Q 037129           84 KCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVV  163 (227)
Q Consensus        84 ~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~  163 (227)
                      ..+.+++.++..|.||||+|+..|+.+++++|+++|+..+.                  ++..|.||||+|+..++.+++
T Consensus       112 ~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~------------------~d~~g~tpLh~A~~~~~~~iv  173 (434)
T PHA02874        112 DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI------------------EDDNGCYPIHIAIKHNFFDII  173 (434)
T ss_pred             HCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCC------------------cCCCCCCHHHHHHHCCcHHHH
Confidence            33556778889999999999999999999999999988664                  677888888888888888888


Q ss_pred             HHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhc
Q 037129          164 EILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRS  225 (227)
Q Consensus       164 ~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  225 (227)
                      ++|++.|++.. ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..+
T Consensus       174 ~~Ll~~g~~~n-~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~  234 (434)
T PHA02874        174 KLLLEKGAYAN-VKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHN  234 (434)
T ss_pred             HHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCC
Confidence            88888887743 67778888888888888888888888888887777777777777776543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=6.8e-33  Score=216.59  Aligned_cols=178  Identities=23%  Similarity=0.227  Sum_probs=158.0

Q ss_pred             CHHHHHHHhcCCchHHHhhHhh-hhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCccccccc-CCCCCHHHH
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGE-EIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVN-AKDDTPLHV  102 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~tpl~~  102 (227)
                      -..++.|++.|+++.|+.|++. |.+++..|++|.++||+|  +.+++.+++++|+++    +.++|..+ .-+.|||||
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWA--AiNNrl~v~r~li~~----gadvn~~gG~l~stPLHW  118 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWA--AINNRLDVARYLISH----GADVNAIGGVLGSTPLHW  118 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHH--HHcCcHHHHHHHHHc----CCCccccCCCCCCCcchH
Confidence            3458889999999999999997 888888999999999999  999999999999997    78888887 667899999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCC
Q 037129          103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGK  182 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~  182 (227)
                      |++.|+..++++|+++|++++.                  +|.+|.+|+|.|++.++.-.+-+++.++++ .+.+|..|+
T Consensus       119 Aar~G~~~vv~lLlqhGAdpt~------------------~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~gr  179 (600)
T KOG0509|consen  119 AARNGHISVVDLLLQHGADPTL------------------KDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGR  179 (600)
T ss_pred             HHHcCcHHHHHHHHHcCCCCce------------------ecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCC
Confidence            9999999999999999999765                  789999999999999999999999998877 448889999


Q ss_pred             CHHHHHHHcCcHHHHHHHHhcCCCCcccC-CCCCCHHHHHHHhcCC
Q 037129          183 TPLYMAAESRSSNMVLALLENRTSVSHEG-PNGKTALHAAAMRSYA  227 (227)
Q Consensus       183 t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~a~~~~~~  227 (227)
                      ||||+|+.++....++.|+.-|+.+...| ..|.||||+|+..|+.
T Consensus       180 TpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~  225 (600)
T KOG0509|consen  180 TPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNL  225 (600)
T ss_pred             CHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCc
Confidence            99999999998888899999999988888 7899999999988873

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-32  Score=204.43  Aligned_cols=169  Identities=14%  Similarity=0.103  Sum_probs=150.7

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCC-CHHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDD-TPLHV  102 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~-tpl~~  102 (227)
                      ..+|||.|+..|+.++++.|++.|.+++..|..|.||||+|  +..++.+++++|++.    +.+++.++..|+ ||||+
T Consensus        61 ~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~A--a~~g~~eivk~Ll~~----gadin~~~~~g~~TpL~~  134 (284)
T PHA02791         61 NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYA--VDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYH  134 (284)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHC----CCCcCccCCCCCcHHHHH
Confidence            46789999999999999999999999999999999999999  999999999999986    667788888885 89999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCC
Q 037129          103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGK  182 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~  182 (227)
                      |+..|+.+++++|++++....                   ....|.||||+|+..|+.+++++|++.|+++. ..+..|.
T Consensus       135 Aa~~g~~eivk~LL~~~~~~~-------------------d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n-~~d~~g~  194 (284)
T PHA02791        135 AVMLNDVSIVSYFLSEIPSTF-------------------DLAILLSCIHITIKNGHVDMMILLLDYMTSTN-TNNSLLF  194 (284)
T ss_pred             HHHcCCHHHHHHHHhcCCccc-------------------ccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-cccCCCC
Confidence            999999999999999865321                   11357999999999999999999999999854 7788888


Q ss_pred             CH-HHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHH
Q 037129          183 TP-LYMAAESRSSNMVLALLENRTSVSHEGPNGKTALH  219 (227)
Q Consensus       183 t~-l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~  219 (227)
                      || ||.|+..|+.+++++|+++|++++.+|..| ++|.
T Consensus       195 t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l~  231 (284)
T PHA02791        195 IPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLLD  231 (284)
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccCC
Confidence            77 999999999999999999999999999854 6664

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.8e-32  Score=215.48  Aligned_cols=178  Identities=17%  Similarity=0.161  Sum_probs=154.9

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAA  104 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~  104 (227)
                      ..+|+.|+..|+.+++++|++.|++++..+..|.||||+|  +..++.+++++|++.    +..++..+..+.||||.|+
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A--~~~~~~~~v~~Ll~~----ga~~~~~~~~~~t~L~~A~   76 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLA--MKFRDSEAIKLLMKH----GAIPDVKYPDIESELHDAV   76 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHH--HHcCCHHHHHHHHhC----CCCccccCCCcccHHHHHH
Confidence            4568999999999999999999999888888899999999  999999999999886    5566667778899999999


Q ss_pred             HcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCH
Q 037129          105 KFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTP  184 (227)
Q Consensus       105 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~  184 (227)
                      ..|+.+++++|++.|.....                 ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||
T Consensus        77 ~~g~~~~v~~Ll~~~~~~~~-----------------~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tp  138 (413)
T PHA02875         77 EEGDVKAVEELLDLGKFADD-----------------VFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSP  138 (413)
T ss_pred             HCCCHHHHHHHHHcCCcccc-----------------cccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCH
Confidence            99999999999998875432                 24567899999999999999999999999884 4778889999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          185 LYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       185 l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus       139 Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~  180 (413)
T PHA02875        139 LHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGD  180 (413)
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            999999999999999999999999999999999999998876

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.5e-32  Score=218.07  Aligned_cols=198  Identities=19%  Similarity=0.139  Sum_probs=149.4

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHH----------------------
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEI----------------------   81 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~----------------------   81 (227)
                      ..+|||.|+..|+.++|++|++.|++++..|..|.||||+|  +..|+.++++.|++.                      
T Consensus        37 ~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~  114 (477)
T PHA02878         37 PFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHII--CKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNV  114 (477)
T ss_pred             CcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCH
Confidence            45689999999999999999999999999999999999999  877776666555442                      


Q ss_pred             --------------------------------------HHhCCcccccccCC-CCCHHHHHHHcCCHHHHHHHHHhhhcc
Q 037129           82 --------------------------------------LEKCPLLLLQVNAK-DDTPLHVAAKFGHSDIVRFLVERAKLT  122 (227)
Q Consensus        82 --------------------------------------~~~~~~~~~~~~~~-g~tpl~~A~~~~~~~~v~~Ll~~~~~~  122 (227)
                                                            +...+.+++..+.. |+||||+|+..|+.+++++|+++|+..
T Consensus       115 ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~  194 (477)
T PHA02878        115 EIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV  194 (477)
T ss_pred             HHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC
Confidence                                                  22235566777777 999999999999999999999999988


Q ss_pred             cccchhhhhhHHHHH---------HH------HHhccCCCCcHHHHHHhc-CCHHHHHHHHhcCCCCCcccccCCCCHHH
Q 037129          123 QHENEELESRVGAAW---------QI------IRMTNKEKNTALHEAVCH-QNVDVVEILTKEDPDYPYSANNYGKTPLY  186 (227)
Q Consensus       123 ~~~~~~~~~~~~~~~---------~~------~~~~~~~~~t~l~~A~~~-~~~~~~~~ll~~~~~~~~~~~~~~~t~l~  186 (227)
                      +..+....+++....         .+      .+.++..|.||||+|+.. ++.+++++|++.|+++....+..|.||||
T Consensus       195 n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh  274 (477)
T PHA02878        195 NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALH  274 (477)
T ss_pred             CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHH
Confidence            765444444433221         11      134566777888887764 57778888888777755333346778888


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhc
Q 037129          187 MAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRS  225 (227)
Q Consensus       187 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  225 (227)
                      .|  .++.+++++|+++|++++..|..|.|||++|+.++
T Consensus       275 ~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        275 SS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQY  311 (477)
T ss_pred             HH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHc
Confidence            87  45677788888888888888888888888887643

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-31  Score=193.55  Aligned_cols=177  Identities=12%  Similarity=0.134  Sum_probs=154.5

Q ss_pred             hccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcc--cccccHHHHHHHHHhCCccccccc-CCCC
Q 037129           21 KQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQE--RENVSTKFVAEILEKCPLLLLQVN-AKDD   97 (227)
Q Consensus        21 ~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~-~~g~   97 (227)
                      .....+||+.|+..|+.+.|+.|+.. ++  ..+..|.||||+|  +..  ++.+++++|++.    +.+++.++ ..|+
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~-~n--~~~~~g~TpLh~a--~~~~~~~~eiv~~Ll~~----gadvn~~~~~~g~   88 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF-VN--DCNDLYETPIFSC--LEKDKVNVEILKFLIEN----GADVNFKTRDNNL   88 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh-hh--ccCccCCCHHHHH--HHcCCCCHHHHHHHHHC----CCCCCccCCCCCC
Confidence            34557789999999999999999964 33  6778999999999  664  589999999986    77888886 4899


Q ss_pred             CHHHHHHHc---CCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHh--cCCHHHHHHHHhcCCC
Q 037129           98 TPLHVAAKF---GHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC--HQNVDVVEILTKEDPD  172 (227)
Q Consensus        98 tpl~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~--~~~~~~~~~ll~~~~~  172 (227)
                      ||||+|+..   ++.+++++|+++|+.++.                  ++..|.||||+|+.  .++.+++++|++.|++
T Consensus        89 TpLh~a~~~~~~~~~eiv~~Ll~~gadin~------------------~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad  150 (209)
T PHA02859         89 SALHHYLSFNKNVEPEILKILIDSGSSITE------------------EDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS  150 (209)
T ss_pred             CHHHHHHHhCccccHHHHHHHHHCCCCCCC------------------cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC
Confidence            999998764   479999999999998765                  78999999999876  4689999999999999


Q ss_pred             CCcccccCCCCHHHH-HHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhc
Q 037129          173 YPYSANNYGKTPLYM-AAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRS  225 (227)
Q Consensus       173 ~~~~~~~~~~t~l~~-A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  225 (227)
                      +. .++..|.||||. |+..++.+++++|+++|++++.+|..|.|||++|..++
T Consensus       151 in-~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        151 FL-NKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             cc-cccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            55 789999999996 56788999999999999999999999999999998764

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.5e-32  Score=218.75  Aligned_cols=189  Identities=19%  Similarity=0.163  Sum_probs=125.2

Q ss_pred             HHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhh--cccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcC-
Q 037129           31 AAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIIS--QERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFG-  107 (227)
Q Consensus        31 a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~-  107 (227)
                      |+..|+.++++.|++.|++++..+..|.||||+|  +  ..|+.+++++|++.    +.+++..+..|.||||.|+..+ 
T Consensus        80 a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A--~~~~~~~~~iv~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~  153 (480)
T PHA03100         80 YNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYA--ISKKSNSYSIVEYLLDN----GANVNIKNSDGENLLHLYLESNK  153 (480)
T ss_pred             HHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHH--HhcccChHHHHHHHHHc----CCCCCccCCCCCcHHHHHHHcCC
Confidence            5555555555555555555544444555555555  4  55555555555543    3344444555555555555555 


Q ss_pred             -CHHHHHHHHHhhhcccccchhhhhhHHHHH---------HH------HHhccCCC------CcHHHHHHhcCC--HHHH
Q 037129          108 -HSDIVRFLVERAKLTQHENEELESRVGAAW---------QI------IRMTNKEK------NTALHEAVCHQN--VDVV  163 (227)
Q Consensus       108 -~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~---------~~------~~~~~~~~------~t~l~~A~~~~~--~~~~  163 (227)
                       +.+++++|+++|+..+.......+++....         .+      .+..+..+      .||||.|+..++  .+++
T Consensus       154 ~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv  233 (480)
T PHA03100        154 IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVV  233 (480)
T ss_pred             ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHH
Confidence             555555555555444333322222221110         00      11234455      899999999999  9999


Q ss_pred             HHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          164 EILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       164 ~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ++|++.|+++. .++..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+.+++
T Consensus       234 ~~Ll~~g~din-~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~  295 (480)
T PHA03100        234 NYLLSYGVPIN-IKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNN  295 (480)
T ss_pred             HHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCC
Confidence            99999999854 788999999999999999999999999999999999999999999998875

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.98  E-value=2.6e-31  Score=212.35  Aligned_cols=176  Identities=19%  Similarity=0.263  Sum_probs=158.5

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHV  102 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~  102 (227)
                      .+.+|||+|+..|+.++|++|++.|.+++..+..|.||||+|  +..++.+++++|++.    +..++..+..|.||||+
T Consensus       123 ~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A--~~~~~~~iv~~Ll~~----g~~~n~~~~~g~tpL~~  196 (434)
T PHA02874        123 ELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIA--IKHNFFDIIKLLLEK----GAYANVKDNNGESPLHN  196 (434)
T ss_pred             CCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHH--HHCCcHHHHHHHHHC----CCCCCCCCCCCCCHHHH
Confidence            345679999999999999999999999999999999999999  999999999999986    67778889999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCC
Q 037129          103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGK  182 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~  182 (227)
                      |+..|+.+++++|++.|+....                  ++..|.||||.|+..+. +.+++|+ .++++ +..+..|.
T Consensus       197 A~~~g~~~iv~~Ll~~g~~i~~------------------~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~i-n~~d~~G~  255 (434)
T PHA02874        197 AAEYGDYACIKLLIDHGNHIMN------------------KCKNGFTPLHNAIIHNR-SAIELLI-NNASI-NDQDIDGS  255 (434)
T ss_pred             HHHcCCHHHHHHHHhCCCCCcC------------------CCCCCCCHHHHHHHCCh-HHHHHHH-cCCCC-CCcCCCCC
Confidence            9999999999999999987654                  67899999999998765 5667766 56764 47889999


Q ss_pred             CHHHHHHHcC-cHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhc
Q 037129          183 TPLYMAAESR-SSNMVLALLENRTSVSHEGPNGKTALHAAAMRS  225 (227)
Q Consensus       183 t~l~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  225 (227)
                      ||||+|+..+ +.+++++|+++|++++.+|..|.|||++|+..+
T Consensus       256 TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        256 TPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             CHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhC
Confidence            9999999876 889999999999999999999999999999765

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.98  E-value=5.1e-32  Score=211.72  Aligned_cols=187  Identities=21%  Similarity=0.186  Sum_probs=169.8

Q ss_pred             ccccchhhhccCCHHHHHHHhcCCchHHHhhHhhhhcccccc-CCCCchhhhhhhhcccccccHHHHHHHHHhCCccccc
Q 037129           13 LLDSNREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTA-KTENTILHINIISQERENVSTKFVAEILEKCPLLLLQ   91 (227)
Q Consensus        13 ~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~-~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~   91 (227)
                      ..+.+.+|. ...++||+|+.+++++++++|+++|.++|..+ ..+.||||+|  +++|+..+++.|+++    |++++.
T Consensus        68 g~~v~~~D~-~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWA--ar~G~~~vv~lLlqh----GAdpt~  140 (600)
T KOG0509|consen   68 GESVNNPDR-EGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWA--ARNGHISVVDLLLQH----GADPTL  140 (600)
T ss_pred             CcCCCCCCc-CCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHH--HHcCcHHHHHHHHHc----CCCCce
Confidence            344556666 55567999999999999999999999999665 5688999999  999999999999998    788899


Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 037129           92 VNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDP  171 (227)
Q Consensus        92 ~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~  171 (227)
                      +|..|.+|||.|+.+++.-++-+|+.+|.+.+.                  +|.+|+|||++|+.+++...+..|++.++
T Consensus       141 ~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~------------------~D~~grTpLmwAaykg~~~~v~~LL~f~a  202 (600)
T KOG0509|consen  141 KDKQGLTPLHLAAQFGHTALVAYLLSKGADIDL------------------RDNNGRTPLMWAAYKGFALFVRRLLKFGA  202 (600)
T ss_pred             ecCCCCcHHHHHHHhCchHHHHHHHHhcccCCC------------------cCCCCCCHHHHHHHhcccHHHHHHHHhcc
Confidence            999999999999999999999999999977654                  89999999999999999998999999999


Q ss_pred             CCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHh
Q 037129          172 DYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMR  224 (227)
Q Consensus       172 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~  224 (227)
                      .+....+..|.||||.|+..|+.+++.++++.|++.+.+|.+|.||+.+|..+
T Consensus       203 ~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  203 SLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            98877779999999999999999999977788899999999999999999765

>PHA02946 ankyin-like protein; Provisional

Probab=99.98  E-value=4.4e-31  Score=210.07  Aligned_cols=195  Identities=15%  Similarity=0.132  Sum_probs=142.5

Q ss_pred             CCHHHHHHHh--cCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHH
Q 037129           24 MDPIFFNAAA--AGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLH  101 (227)
Q Consensus        24 ~~~~l~~a~~--~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~  101 (227)
                      ...+||.++.  .++.++|+.|++.|.+++..|..|.||||+|  +..|+.+++++|++.    +.+++.+|..|.||||
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~A--a~~g~~eiv~lLL~~----GAdin~~d~~g~TpLh  110 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIA--SKINNNRIVAMLLTH----GADPNACDKQHKTPLY  110 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHH--HHcCCHHHHHHHHHC----cCCCCCCCCCCCCHHH
Confidence            3456665543  3345677777777777777777777777777  777777777777765    5667777777777777


Q ss_pred             HHHHcCC--HHHHHHHHHhhhcccc-cchhhhhhHHHH--------HH------HHHhccCCCCcHHHHHHhcC--CHHH
Q 037129          102 VAAKFGH--SDIVRFLVERAKLTQH-ENEELESRVGAA--------WQ------IIRMTNKEKNTALHEAVCHQ--NVDV  162 (227)
Q Consensus       102 ~A~~~~~--~~~v~~Ll~~~~~~~~-~~~~~~~~~~~~--------~~------~~~~~~~~~~t~l~~A~~~~--~~~~  162 (227)
                      +|+..+.  .+++++|+++|+..+. .+....+++...        ..      ..+.++..|+||||+|+..+  +.++
T Consensus       111 ~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~  190 (446)
T PHA02946        111 YLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKAST  190 (446)
T ss_pred             HHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHH
Confidence            7776553  6777777777776653 122222222111        00      12346788999999988654  4689


Q ss_pred             HHHHHhcCCCCCcccccCCCCHHHHHHHcC--cHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          163 VEILTKEDPDYPYSANNYGKTPLYMAAESR--SSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       163 ~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      +++|++.|+++. .++..|.||||+|+..+  +.+++++|+. |++++.+|..|.||||+|+.+++
T Consensus       191 v~~Ll~~Gadin-~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~  254 (446)
T PHA02946        191 ISWMMKLGISPS-KPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLS  254 (446)
T ss_pred             HHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCC
Confidence            999999999954 78899999999999876  8899999985 89999999999999999998765

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=6.7e-31  Score=212.39  Aligned_cols=195  Identities=16%  Similarity=0.144  Sum_probs=119.6

Q ss_pred             HHHHHHhcC-CchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHH
Q 037129           27 IFFNAAAAG-NSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAK  105 (227)
Q Consensus        27 ~l~~a~~~g-~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~  105 (227)
                      |||.|+..| ..++++.|++.|++++..+..|.||||+|+....++.+++++|++.    +.+++..+..|.||||+|+.
T Consensus        86 pLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~----gad~~~~d~~g~tpL~~a~~  161 (471)
T PHA03095         86 PLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRK----GADVNALDLYGMTPLAVLLK  161 (471)
T ss_pred             HHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHc----CCCCCccCCCCCCHHHHHHH
Confidence            345455544 2444555554444444444444555554411133344444444443    33444444445555554444


Q ss_pred             cC--CHHHHHHHHHhhhcccccchhhhhhHHHHH-----------HH------HHhccCCCCcHHHHHHhcCCH--HHHH
Q 037129          106 FG--HSDIVRFLVERAKLTQHENEELESRVGAAW-----------QI------IRMTNKEKNTALHEAVCHQNV--DVVE  164 (227)
Q Consensus       106 ~~--~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-----------~~------~~~~~~~~~t~l~~A~~~~~~--~~~~  164 (227)
                      .+  ..+++++|++.|......+....+++....           .+      .+.++..|.||||+|+..++.  .+++
T Consensus       162 ~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~  241 (471)
T PHA03095        162 SRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVL  241 (471)
T ss_pred             cCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHH
Confidence            33  344455555554444332222222221110           00      134567788888888887764  5777


Q ss_pred             HHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          165 ILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       165 ~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      .|++.|.+++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+.+|+
T Consensus       242 ~ll~~g~din-~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~  302 (471)
T PHA03095        242 PLLIAGISIN-ARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNN  302 (471)
T ss_pred             HHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCC
Confidence            8888888854 778899999999999999999999999999999999999999999999876

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=9.5e-31  Score=211.33  Aligned_cols=175  Identities=19%  Similarity=0.181  Sum_probs=144.5

Q ss_pred             hhhhccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCC
Q 037129           18 REIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDD   97 (227)
Q Consensus        18 ~~~~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   97 (227)
                      ..+...+.+|||.|+..|+.++++.|++.|.+++..+..|.||||+|  +..++.+++++|++.    +.+++.++..|.
T Consensus       162 ~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A--~~~~~~~iv~~Ll~~----ga~in~~d~~g~  235 (477)
T PHA02878        162 MKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHA--VKHYNKPIVHILLEN----GASTDARDKCGN  235 (477)
T ss_pred             ccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHhCCHHHHHHHHHc----CCCCCCCCCCCC
Confidence            34444366789999999999999999999999888888999999999  999999999999876    777888899999


Q ss_pred             CHHHHHHHc-CCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhcc-CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCc
Q 037129           98 TPLHVAAKF-GHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTN-KEKNTALHEAVCHQNVDVVEILTKEDPDYPY  175 (227)
Q Consensus        98 tpl~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~  175 (227)
                      ||||+|+.. ++.+++++|+++|+..+.                  ++ ..|.||||+|  .++.+++++|++.|+++ +
T Consensus       236 TpLh~A~~~~~~~~iv~~Ll~~gadvn~------------------~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadi-n  294 (477)
T PHA02878        236 TPLHISVGYCKDYDILKLLLEHGVDVNA------------------KSYILGLTALHSS--IKSERKLKLLLEYGADI-N  294 (477)
T ss_pred             CHHHHHHHhcCCHHHHHHHHHcCCCCCc------------------cCCCCCCCHHHHH--ccCHHHHHHHHHCCCCC-C
Confidence            999999975 688999999999988764                  33 3799999999  46789999999999995 4


Q ss_pred             ccccCCCCHHHHHHHcC-cHHHHHHHHhc-----CCCCcccCCCCCCHHH
Q 037129          176 SANNYGKTPLYMAAESR-SSNMVLALLEN-----RTSVSHEGPNGKTALH  219 (227)
Q Consensus       176 ~~~~~~~t~l~~A~~~~-~~~~v~~Ll~~-----g~~~~~~~~~g~t~l~  219 (227)
                      ..+..|.||||.|+..+ ..+++++|+.+     +.+++.++..|..+-.
T Consensus       295 ~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g~~~n~  344 (477)
T PHA02878        295 SLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGFIDNM  344 (477)
T ss_pred             CcCCCCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCcHHHHHHH
Confidence            88999999999999754 55677777665     4677777776665543

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=7e-31  Score=212.72  Aligned_cols=201  Identities=22%  Similarity=0.186  Sum_probs=171.0

Q ss_pred             hhhccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhh-----hhhhcccccccHHHHHHHHHhCCccccccc
Q 037129           19 EIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHI-----NIISQERENVSTKFVAEILEKCPLLLLQVN   93 (227)
Q Consensus        19 ~~~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~-----a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   93 (227)
                      .......+|||.|+..|+.++|+.|++.|.+++..+..|.||||+     |  +..++.+++++|++.    +.+++..+
T Consensus        30 ~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a--~~~~~~~iv~~Ll~~----ga~i~~~d  103 (480)
T PHA03100         30 YSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKY--NLTDVKEIVKLLLEY----GANVNAPD  103 (480)
T ss_pred             hhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH--HhhchHHHHHHHHHC----CCCCCCCC
Confidence            344556778999999999999999999999999888899999999     9  999999999999986    67778899


Q ss_pred             CCCCCHHHHHH--HcCCHHHHHHHHHhhhcccccchhhhhhHHHHH-----------HH------HHhccCCCCcHHHHH
Q 037129           94 AKDDTPLHVAA--KFGHSDIVRFLVERAKLTQHENEELESRVGAAW-----------QI------IRMTNKEKNTALHEA  154 (227)
Q Consensus        94 ~~g~tpl~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-----------~~------~~~~~~~~~t~l~~A  154 (227)
                      ..|.||||+|+  ..|+.+++++|+++|+..+..+....+++....           .+      ++.++..|.||||+|
T Consensus       104 ~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A  183 (480)
T PHA03100        104 NNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIA  183 (480)
T ss_pred             CCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHH
Confidence            99999999999  999999999999999887655444333322111           11      234566889999999


Q ss_pred             HhcCCHHHHHHHHhcCCCCCcccccCC------CCHHHHHHHcCc--HHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          155 VCHQNVDVVEILTKEDPDYPYSANNYG------KTPLYMAAESRS--SNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       155 ~~~~~~~~~~~ll~~~~~~~~~~~~~~------~t~l~~A~~~~~--~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      +..|+.+++++|++.|++.. ..+..|      .||||.|+..++  .+++++|+++|++++.+|..|.||||+|+.+|+
T Consensus       184 ~~~~~~~iv~~Ll~~ga~~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~  262 (480)
T PHA03100        184 VEKGNIDVIKFLLDNGADIN-AGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNN  262 (480)
T ss_pred             HHhCCHHHHHHHHHcCCCcc-CCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            99999999999999998854 566667      899999999999  999999999999999999999999999998875

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=3.4e-30  Score=205.04  Aligned_cols=188  Identities=14%  Similarity=0.159  Sum_probs=151.1

Q ss_pred             HHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHc
Q 037129           27 IFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKF  106 (227)
Q Consensus        27 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~  106 (227)
                      +++.++..++.+.++.+++....     ..+.++||.++.....+.+++++|++.    +.+++.++..|.||||+|+..
T Consensus        12 sl~~~~~~~n~~~~~~~l~~~~~-----~g~~~~Lh~~~~~~~~~~~iv~~Ll~~----Gadvn~~d~~G~TpLh~Aa~~   82 (446)
T PHA02946         12 SLYAKYNSKNLDVFRNMLQAIEP-----SGNYHILHAYCGIKGLDERFVEELLHR----GYSPNETDDDGNYPLHIASKI   82 (446)
T ss_pred             HHHHHHccCcHHHHHHHHhccCC-----CCCChHHHHHHHhcCCCHHHHHHHHHC----cCCCCccCCCCCCHHHHHHHc
Confidence            46889999999999999974221     134699998843455677889999886    778899999999999999999


Q ss_pred             CCHHHHHHHHHhhhcccccchhhhhhHHHHH-------H----HH------H-hccCCCCcHHHHHHhcCCHHHHHHHHh
Q 037129          107 GHSDIVRFLVERAKLTQHENEELESRVGAAW-------Q----II------R-MTNKEKNTALHEAVCHQNVDVVEILTK  168 (227)
Q Consensus       107 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-------~----~~------~-~~~~~~~t~l~~A~~~~~~~~~~~ll~  168 (227)
                      |+.+++++|+++|++++..+....+++....       .    ++      + ..+..|.|||+ |+..++.+++++|++
T Consensus        83 g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~  161 (446)
T PHA02946         83 NNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMS  161 (446)
T ss_pred             CCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHh
Confidence            9999999999999998876666655554221       1    11      1 24677889987 556688899999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHcC--cHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhc
Q 037129          169 EDPDYPYSANNYGKTPLYMAAESR--SSNMVLALLENRTSVSHEGPNGKTALHAAAMRS  225 (227)
Q Consensus       169 ~~~~~~~~~~~~~~t~l~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  225 (227)
                      .|+++ +..+..|.||||.|+..+  ..+++++|+++|++++.+|.+|.||||+|+.+|
T Consensus       162 ~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~  219 (446)
T PHA02946        162 IGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKT  219 (446)
T ss_pred             ccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence            98885 478889999999987655  468999999999999999999999999999876

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=5.2e-30  Score=207.43  Aligned_cols=180  Identities=16%  Similarity=0.111  Sum_probs=129.1

Q ss_pred             CCHHHHHHHhc-----CCchHHHhhHhhhhccccccCCCCchhhhhhhhccc---ccccHHHHHHHHHhCCcccccccCC
Q 037129           24 MDPIFFNAAAA-----GNSEPFKDMAGEEIKSLLTAKTENTILHINIISQER---ENVSTKFVAEILEKCPLLLLQVNAK   95 (227)
Q Consensus        24 ~~~~l~~a~~~-----g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~   95 (227)
                      +.+|||.|+..     +..++++.|++.|+|++..+..|.||||+|  +..+   +.+++++|++.    |.+++.++..
T Consensus        71 g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a--~~~~~~~~~~iv~~Ll~~----Gadvn~~d~~  144 (489)
T PHA02798         71 YSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCL--LSNGYINNLEILLFMIEN----GADTTLLDKD  144 (489)
T ss_pred             CCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHH--HHcCCcChHHHHHHHHHc----CCCccccCCC
Confidence            34556666543     456777777777777776666777777777  5543   45666666654    5666667777


Q ss_pred             CCCHHHHHHHcCC---HHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhc----CCHHHHHHHHh
Q 037129           96 DDTPLHVAAKFGH---SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH----QNVDVVEILTK  168 (227)
Q Consensus        96 g~tpl~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~----~~~~~~~~ll~  168 (227)
                      |.||||+|+..++   .+++++|+++|++.+..                 .+..+.||||.++..    ++.+++++|++
T Consensus       145 g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~-----------------~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~  207 (489)
T PHA02798        145 GFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTH-----------------NNKEKYDTLHCYFKYNIDRIDADILKLFVD  207 (489)
T ss_pred             CCcHHHHHHHcCCcchHHHHHHHHHhCCCcccc-----------------cCcCCCcHHHHHHHhccccCCHHHHHHHHH
Confidence            7777777777666   67777777777665431                 134566777766543    35677777776


Q ss_pred             cCCCCC--------------------------------------cccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCccc
Q 037129          169 EDPDYP--------------------------------------YSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHE  210 (227)
Q Consensus       169 ~~~~~~--------------------------------------~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~  210 (227)
                      .|+++.                                      +.++..|.||||+|+..++.+++++|+++|++++..
T Consensus       208 ~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~  287 (489)
T PHA02798        208 NGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINII  287 (489)
T ss_pred             CCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCccccc
Confidence            665432                                      245678999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHhcC
Q 037129          211 GPNGKTALHAAAMRSY  226 (227)
Q Consensus       211 ~~~g~t~l~~a~~~~~  226 (227)
                      +..|.|||++|+.+|+
T Consensus       288 d~~G~TpL~~A~~~~~  303 (489)
T PHA02798        288 TELGNTCLFTAFENES  303 (489)
T ss_pred             CCCCCcHHHHHHHcCc
Confidence            9999999999998875

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=5.9e-30  Score=207.38  Aligned_cols=184  Identities=14%  Similarity=0.101  Sum_probs=121.1

Q ss_pred             CchHHHhhHhhhhccccccCCCCchhhhhhhhccc------ccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHc---
Q 037129           36 NSEPFKDMAGEEIKSLLTAKTENTILHINIISQER------ENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKF---  106 (227)
Q Consensus        36 ~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~---  106 (227)
                      +.++|+.|++.|++++..+ .+.||||.|  +..+      ..+++++|++.    |.+++.++..|+||||.|+..   
T Consensus        49 ~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a--~~~~~~~~~~~~~iv~~Ll~~----Gadin~~d~~g~tpL~~a~~~~~~  121 (494)
T PHA02989         49 KIKIVKLLIDNGADVNYKG-YIETPLCAV--LRNREITSNKIKKIVKLLLKF----GADINLKTFNGVSPIVCFIYNSNI  121 (494)
T ss_pred             ChHHHHHHHHcCCCccCCC-CCCCcHHHH--HhccCcchhhHHHHHHHHHHC----CCCCCCCCCCCCcHHHHHHHhccc
Confidence            4566666666666666554 456666655  4332      34455555554    555666666666666655443   


Q ss_pred             CCHHHHHHHHHhhhcc-cccchhhhhhHHHHH-----------HHH------Hh-ccCCCCcHHHHHHhcC----CHHHH
Q 037129          107 GHSDIVRFLVERAKLT-QHENEELESRVGAAW-----------QII------RM-TNKEKNTALHEAVCHQ----NVDVV  163 (227)
Q Consensus       107 ~~~~~v~~Ll~~~~~~-~~~~~~~~~~~~~~~-----------~~~------~~-~~~~~~t~l~~A~~~~----~~~~~  163 (227)
                      ++.+++++|+++|+++ +..+....+++....           .++      +. .+..|.||||.|+..+    +.+++
T Consensus       122 ~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv  201 (494)
T PHA02989        122 NNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVI  201 (494)
T ss_pred             CcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHH
Confidence            4556666666666655 333333333322110           000      11 3557788888876653    77888


Q ss_pred             HHHHhcCCCCC-------------------------------------cccccCCCCHHHHHHHcCcHHHHHHHHhcCCC
Q 037129          164 EILTKEDPDYP-------------------------------------YSANNYGKTPLYMAAESRSSNMVLALLENRTS  206 (227)
Q Consensus       164 ~~ll~~~~~~~-------------------------------------~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  206 (227)
                      ++|++.|+++.                                     +.++..|.||||+|+..++.+++++|+++|++
T Consensus       202 ~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad  281 (494)
T PHA02989        202 KYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD  281 (494)
T ss_pred             HHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC
Confidence            88888876643                                     23456799999999999999999999999999


Q ss_pred             CcccCCCCCCHHHHHHHhcC
Q 037129          207 VSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       207 ~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ++.+|..|.||||+|+.+|+
T Consensus       282 in~~d~~G~TpL~~A~~~~~  301 (494)
T PHA02989        282 IYNVSKDGDTVLTYAIKHGN  301 (494)
T ss_pred             ccccCCCCCCHHHHHHHcCC
Confidence            99999999999999999886

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=9.3e-30  Score=209.47  Aligned_cols=193  Identities=13%  Similarity=0.121  Sum_probs=145.7

Q ss_pred             hccCCHHHHHHHhc--CCchHHHhhHhhhhccccccCCCCchhhhhhhhccccc--ccHHHHHHHHHhCCcccccccCCC
Q 037129           21 KQQMDPIFFNAAAA--GNSEPFKDMAGEEIKSLLTAKTENTILHINIISQEREN--VSTKFVAEILEKCPLLLLQVNAKD   96 (227)
Q Consensus        21 ~~~~~~~l~~a~~~--g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~g   96 (227)
                      ...+.+|||.|+..  ++.+++++|++.|++++..|..|.||||+|  +..|+.  +++++|++.    |.+++.++..|
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~A--a~~g~~~~eIVklLLe~----GADVN~kD~~G  247 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTY--LITGNVCASVIKKIIEL----GGDMDMKCVNG  247 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCCCHHHHHHHHHc----CCCCCCCCCCC
Confidence            34567789987654  578999999999999999998999999999  888854  789999886    78889999999


Q ss_pred             CCHHHHHH---HcCCHHHHHHHHHhhhcccccchhhh----------hhHHHHHH------HHHhccCCCCcHHHHHHh-
Q 037129           97 DTPLHVAA---KFGHSDIVRFLVERAKLTQHENEELE----------SRVGAAWQ------IIRMTNKEKNTALHEAVC-  156 (227)
Q Consensus        97 ~tpl~~A~---~~~~~~~v~~Ll~~~~~~~~~~~~~~----------~~~~~~~~------~~~~~~~~~~t~l~~A~~-  156 (227)
                      +||||.|+   ..++.++++.|++.+...........          ........      .++.++..|+||||+|+. 
T Consensus       248 ~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~  327 (764)
T PHA02716        248 MSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILR  327 (764)
T ss_pred             CCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHH
Confidence            99999764   34556666666554322111000000          00000000      124478899999999764 


Q ss_pred             -cCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHH--------------cCcHHHHHHHHhcCCCCcccCCCCCCHHHH
Q 037129          157 -HQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAE--------------SRSSNMVLALLENRTSVSHEGPNGKTALHA  220 (227)
Q Consensus       157 -~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~--------------~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  220 (227)
                       .++.+++++|++.|+++. .++..|.||||.|+.              .++.+++++|+++|++++.++..|.||||.
T Consensus       328 ~~~~~eIVklLLe~GADIN-~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~  405 (764)
T PHA02716        328 HNISTDIIKLLHEYGNDLN-EPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTS  405 (764)
T ss_pred             hCCCchHHHHHHHcCCCCc-cCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHH
Confidence             468899999999999954 789999999999865              368999999999999999999999999993

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.5e-29  Score=204.49  Aligned_cols=197  Identities=18%  Similarity=0.142  Sum_probs=166.0

Q ss_pred             cCCHHHHHHHhcC---CchHHHhhHhhhhccccccCCCCchhhhhhhhccc-ccccHHHHHHHHHhCCcccccccCCCCC
Q 037129           23 QMDPIFFNAAAAG---NSEPFKDMAGEEIKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCPLLLLQVNAKDDT   98 (227)
Q Consensus        23 ~~~~~l~~a~~~g---~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~g~t   98 (227)
                      .+.+|||.|+..|   +.++++.|++.|.+++..+..|.||||+|  +..+ ..+++++|++.    +.+++.++..|.|
T Consensus        46 ~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A--~~~~~~~~iv~lLl~~----ga~in~~~~~g~t  119 (471)
T PHA03095         46 YGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLY--LYNATTLDVIKLLIKA----GADVNAKDKVGRT  119 (471)
T ss_pred             CCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCcHHHHHHHHHc----CCCCCCCCCCCCC
Confidence            3567899999999   99999999999999999999999999999  9999 59999999986    7788999999999


Q ss_pred             HHHHHH--HcCCHHHHHHHHHhhhcccccchhhhhhHHHHH-----------HHH------HhccCCCCcHHHHHHhc--
Q 037129           99 PLHVAA--KFGHSDIVRFLVERAKLTQHENEELESRVGAAW-----------QII------RMTNKEKNTALHEAVCH--  157 (227)
Q Consensus        99 pl~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-----------~~~------~~~~~~~~t~l~~A~~~--  157 (227)
                      |||+|+  ..++.+++++|+++|+.++..+....+++....           .++      ...+..|.||||+|+..  
T Consensus       120 pLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~  199 (471)
T PHA03095        120 PLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFK  199 (471)
T ss_pred             HHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCC
Confidence            999999  556889999999999988765555544443211           111      22467789999998864  


Q ss_pred             CCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcH--HHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSS--NMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       158 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~--~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      +..++++.|++.|++ ++.++..|.||||+|+..++.  .+++.|++.|++++.+|..|.||||+|+..|+
T Consensus       200 ~~~~i~~~Ll~~g~~-~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~  269 (471)
T PHA03095        200 PRARIVRELIRAGCD-PAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNN  269 (471)
T ss_pred             CcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            778899999999998 458899999999999998864  57888999999999999999999999998876

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=2.2e-29  Score=201.39  Aligned_cols=205  Identities=19%  Similarity=0.156  Sum_probs=166.4

Q ss_pred             ccchhhhccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHH-HHHhCCccccccc
Q 037129           15 DSNREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAE-ILEKCPLLLLQVN   93 (227)
Q Consensus        15 ~~~~~~~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~   93 (227)
                      +++..+..+ .+|||.||..++.+..+.|++.|.++-..|..|+.|+|.|  +++|..++.+.++. ++......+|..+
T Consensus       146 dvnl~de~~-~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~a--a~s~s~e~mEi~l~~~g~~r~~~in~~~  222 (929)
T KOG0510|consen  146 DVNLEDENG-FTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEA--ARSGSKECMEIFLPEHGYERQTHINFDN  222 (929)
T ss_pred             CccccccCC-CchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHH--HHhcchhhhhhhhccccchhhccccccc
Confidence            444444433 4458888888888877888888888888888888888888  88888888888877 2223345577788


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCC
Q 037129           94 AKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDY  173 (227)
Q Consensus        94 ~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~  173 (227)
                      ..+.+|||.|+..|+.++++.+|+.|+.......   ..-...+.+++..|.+|+||||+|++.|.++.++.|+..|+++
T Consensus       223 n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~---~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I  299 (929)
T KOG0510|consen  223 NEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQL---DAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI  299 (929)
T ss_pred             CCCCcchhhhhhcCCHHHHHHHHhCccccchhhh---HHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc
Confidence            8899999999999999999999999877543221   1334556778889999999999999999999999999999996


Q ss_pred             CcccccCCCCHHHHHHHcCcHHHHHHHHh-cC-CCCcccCCCCCCHHHHHHHhcC
Q 037129          174 PYSANNYGKTPLYMAAESRSSNMVLALLE-NR-TSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       174 ~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~-~g-~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      . .++.++.||||.|+++|++.+++.|++ .| ...+..|..|+||||+|+++||
T Consensus       300 ~-~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH  353 (929)
T KOG0510|consen  300 N-SKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGH  353 (929)
T ss_pred             c-ccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCH
Confidence            5 788899999999999999999999988 44 6778888899999999998886

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=206.15  Aligned_cols=200  Identities=20%  Similarity=0.166  Sum_probs=159.4

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHH----------------------
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEI----------------------   81 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~----------------------   81 (227)
                      +.+|||.|+..|+.++|++|++.|.+++..+..|.||||+|  +..++.++++.|++.                      
T Consensus       178 G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A--~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~  255 (682)
T PHA02876        178 CITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECA--VDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLET  255 (682)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHH--HHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHH
Confidence            45679999999999999999999999998888999999999  999999999888653                      


Q ss_pred             ---HHhCCcccccccCCCCCHHHHHHHcCCH-HHHHHHHHhhhcccccchhhhhhHHHHHH----------------HHH
Q 037129           82 ---LEKCPLLLLQVNAKDDTPLHVAAKFGHS-DIVRFLVERAKLTQHENEELESRVGAAWQ----------------IIR  141 (227)
Q Consensus        82 ---~~~~~~~~~~~~~~g~tpl~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~----------------~~~  141 (227)
                         +...+..++..+..|.||||+|+..++. +++++|++.|+..+..+....+++.....                ..+
T Consensus       256 ~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin  335 (682)
T PHA02876        256 SLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVN  335 (682)
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCC
Confidence               2233556777788899999999999986 68999999998877655544444332211                023


Q ss_pred             hccCCCCcHHHHHHhc-CCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHH
Q 037129          142 MTNKEKNTALHEAVCH-QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHA  220 (227)
Q Consensus       142 ~~~~~~~t~l~~A~~~-~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  220 (227)
                      ..+..|.||||+|+.. ++.++++.|++.|+++. .++..|.||||+|+..++.+++++|+++|++++..+..|.||||+
T Consensus       336 ~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin-~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~  414 (682)
T PHA02876        336 AADRLYITPLHQASTLDRNKDIVITLLELGANVN-ARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHF  414 (682)
T ss_pred             CcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCc-cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHH
Confidence            4566788888888874 56778888888888844 778888899999988889999999999899888888888899998


Q ss_pred             HHHhcC
Q 037129          221 AAMRSY  226 (227)
Q Consensus       221 a~~~~~  226 (227)
                      |+..++
T Consensus       415 A~~~~~  420 (682)
T PHA02876        415 ALCGTN  420 (682)
T ss_pred             HHHcCC
Confidence            886543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1.1e-29  Score=192.31  Aligned_cols=181  Identities=23%  Similarity=0.228  Sum_probs=161.6

Q ss_pred             hccCCHHHHHHHhcCCchHHHhhHh-hhhccc--------cccCCCCchhhhhhhhcccccccHHHHHHHHHhCCccccc
Q 037129           21 KQQMDPIFFNAAAAGNSEPFKDMAG-EEIKSL--------LTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQ   91 (227)
Q Consensus        21 ~~~~~~~l~~a~~~g~~~~v~~ll~-~~~~~~--------~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~   91 (227)
                      .....+||.+|+++|+.++|.+|++ .+.++.        --...|-+||..|  +..|++++|+.|++.    +.+||.
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaA--saAGHl~vVk~L~~~----ga~VN~  112 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAA--SAAGHLEVVKLLLRR----GASVND  112 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHH--hccCcHHHHHHHHHh----cCcccc
Confidence            3445678999999999999999998 344433        2235788999999  999999999999997    678898


Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 037129           92 VNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDP  171 (227)
Q Consensus        92 ~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~  171 (227)
                      ......|||..||.-|+.+++++|+++|+++..                  .+..|.|+|++||.+|+.+++++|++.|+
T Consensus       113 tT~TNStPLraACfDG~leivKyLvE~gad~~I------------------anrhGhTcLmIa~ykGh~~I~qyLle~gA  174 (615)
T KOG0508|consen  113 TTRTNSTPLRAACFDGHLEIVKYLVEHGADPEI------------------ANRHGHTCLMIACYKGHVDIAQYLLEQGA  174 (615)
T ss_pred             ccccCCccHHHHHhcchhHHHHHHHHcCCCCcc------------------cccCCCeeEEeeeccCchHHHHHHHHhCC
Confidence            888888999999999999999999999999764                  78999999999999999999999999999


Q ss_pred             CCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcCC
Q 037129          172 DYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSYA  227 (227)
Q Consensus       172 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  227 (227)
                      +++ .++..|.|+||.|+..|+.+++++|+++|+.+... ..|.|||..|+..|++
T Consensus       175 Dvn-~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d-~~GmtPL~~Aa~tG~~  228 (615)
T KOG0508|consen  175 DVN-AKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVD-GHGMTPLLLAAVTGHT  228 (615)
T ss_pred             Ccc-hhcccCchHHHhhhhcccHHHHHHHHhCCceeeec-CCCCchHHHHhhhcch
Confidence            965 89999999999999999999999999999999764 4599999999999874

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.96  E-value=1.3e-28  Score=209.60  Aligned_cols=174  Identities=18%  Similarity=0.218  Sum_probs=159.8

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHV  102 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~  102 (227)
                      ....+|+.||..|+.+.++.|++.|.+++..|..|.||||+|  +..|+.+++++|++.    +.+++.+|..|+||||+
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~A--a~~g~~~~v~~Ll~~----gadin~~d~~G~TpL~~  597 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIA--ASKGYEDCVLVLLKH----ACNVHIRDANGNTALWN  597 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcChHHHHHHHHhc----CCCCCCcCCCCCCHHHH
Confidence            346779999999999999999999999999999999999999  999999999999986    77889999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCC
Q 037129          103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGK  182 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~  182 (227)
                      |+..|+.+++++|++.+...+                    ...+.++||.|+..|+.++++.|+++|++++ ..|..|.
T Consensus       598 A~~~g~~~iv~~L~~~~~~~~--------------------~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin-~~d~~G~  656 (823)
T PLN03192        598 AISAKHHKIFRILYHFASISD--------------------PHAAGDLLCTAAKRNDLTAMKELLKQGLNVD-SEDHQGA  656 (823)
T ss_pred             HHHhCCHHHHHHHHhcCcccC--------------------cccCchHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCC
Confidence            999999999999998765532                    3567789999999999999999999999954 8899999


Q ss_pred             CHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC-CCHHHHHHH
Q 037129          183 TPLYMAAESRSSNMVLALLENRTSVSHEGPNG-KTALHAAAM  223 (227)
Q Consensus       183 t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g-~t~l~~a~~  223 (227)
                      ||||.|+..|+.+++++|+++|++++..+..| .||+.++..
T Consensus       657 TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        657 TALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             CHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH
Confidence            99999999999999999999999999999988 899987754

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=5e-29  Score=199.39  Aligned_cols=194  Identities=21%  Similarity=0.226  Sum_probs=111.4

Q ss_pred             CHHHHHHHhcCCchHHHhhHh-----hhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhC-----------Ccc
Q 037129           25 DPIFFNAAAAGNSEPFKDMAG-----EEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKC-----------PLL   88 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~-----~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~-----------~~~   88 (227)
                      +.++|.|++.|..++.+.++.     ++..++..+..|.+|||.|  +..|++++++.+++.+...           ...
T Consensus       188 ~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlA--ve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kel  265 (929)
T KOG0510|consen  188 NFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLA--VEGGDIEMLKMCLQNGKKIADVQLDAMQQEKEL  265 (929)
T ss_pred             CchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhh--hhcCCHHHHHHHHhCccccchhhhHHHHHHHHH
Confidence            334666666666666666665     4444555555566666666  6666666666655543211           222


Q ss_pred             cccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHH-----------------HHHHHhccCCCCcHH
Q 037129           89 LLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAA-----------------WQIIRMTNKEKNTAL  151 (227)
Q Consensus        89 ~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~t~l  151 (227)
                      ++..|.+|.||||+||+.|+.+.++.|+..|+.++....+..+++...                 ..+++..|..|.|||
T Consensus       266 v~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpL  345 (929)
T KOG0510|consen  266 VNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPL  345 (929)
T ss_pred             hhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCch
Confidence            444555666666666666666666666666665544222221111100                 011334555666777


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCCCc--ccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHH
Q 037129          152 HEAVCHQNVDVVEILTKEDPDYPY--SANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHA  220 (227)
Q Consensus       152 ~~A~~~~~~~~~~~ll~~~~~~~~--~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  220 (227)
                      |.|+..|+..+++.|++.|+...+  ..|++|.|+||.|+.+|+..+|+.|+.+|+++..++..|.+++++
T Consensus       346 Hlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  346 HLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             hhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccccccccccc
Confidence            777777777777777776666543  336667777777777777777777777777776667777666653

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=3.6e-28  Score=204.04  Aligned_cols=179  Identities=19%  Similarity=0.162  Sum_probs=105.8

Q ss_pred             CHHHHHHHhcCCc-hHHHhhHhhhhccccccCCCCchhhhhhhhccc-ccccHHHHHHH---------------------
Q 037129           25 DPIFFNAAAAGNS-EPFKDMAGEEIKSLLTAKTENTILHINIISQER-ENVSTKFVAEI---------------------   81 (227)
Q Consensus        25 ~~~l~~a~~~g~~-~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~-~~~~~~~l~~~---------------------   81 (227)
                      .+|||.|+..|+. ++++.|++.|.+++..+..|.||||+|  +..| ..++++.|+..                     
T Consensus       274 ~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~A--a~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~  351 (682)
T PHA02876        274 NTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLM--AKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL  351 (682)
T ss_pred             CCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHh
Confidence            3445666655554 355555555555555555555666555  5554 34444444433                     


Q ss_pred             ---------HHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHH
Q 037129           82 ---------LEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALH  152 (227)
Q Consensus        82 ---------~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~  152 (227)
                               +...+.+++.++..|.||||+|+..|+.+++++|+++|+..+.                  .+..|.||||
T Consensus       352 ~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~------------------~~~~g~T~Lh  413 (682)
T PHA02876        352 DRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEA------------------LSQKIGTALH  413 (682)
T ss_pred             CCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccc------------------cCCCCCchHH
Confidence                     0111444455555555555555555555555555555554332                  4556667777


Q ss_pred             HHHhcCC-HHHHHHHHhcCCCCCcccccCCCCHHHHHHHcC-cHHHHHHHHhcCCCCcccCCCCCCHHHHHHHh
Q 037129          153 EAVCHQN-VDVVEILTKEDPDYPYSANNYGKTPLYMAAESR-SSNMVLALLENRTSVSHEGPNGKTALHAAAMR  224 (227)
Q Consensus       153 ~A~~~~~-~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~  224 (227)
                      +|+..+. ..++++|++.|+++ +.++..|.||||+|+..+ +.+++++|+++|++++.+|..|.||+++|+..
T Consensus       414 ~A~~~~~~~~~vk~Ll~~gadi-n~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~  486 (682)
T PHA02876        414 FALCGTNPYMSVKTLIDRGANV-NSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEY  486 (682)
T ss_pred             HHHHcCCHHHHHHHHHhCCCCC-CcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHh
Confidence            7665444 34566777777663 366777777777777765 56777777777777777777777777777653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=1.8e-28  Score=201.88  Aligned_cols=186  Identities=17%  Similarity=0.110  Sum_probs=144.5

Q ss_pred             hcCCchHHHhhHhhh-hccccc-cCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCC--
Q 037129           33 AAGNSEPFKDMAGEE-IKSLLT-AKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGH--  108 (227)
Q Consensus        33 ~~g~~~~v~~ll~~~-~~~~~~-~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~--  108 (227)
                      ..++.++|++|++.| ++++.. +..|.||||+|+....++.+++++|++.    |.+++.++..|.||||+|+..|+  
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~----GADVN~kD~~G~TPLH~Aa~~g~~~  226 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNN----GVNVNLQNNHLITPLHTYLITGNVC  226 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHcCCCC
Confidence            458999999999999 998877 8899999999832334678899999986    78899999999999999999995  


Q ss_pred             HHHHHHHHHhhhcccccchhhhhhHHHHH------------HHHHhccCC--CC--cHHH---HHHhcCCHHHHHHHHhc
Q 037129          109 SDIVRFLVERAKLTQHENEELESRVGAAW------------QIIRMTNKE--KN--TALH---EAVCHQNVDVVEILTKE  169 (227)
Q Consensus       109 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~--~~--t~l~---~A~~~~~~~~~~~ll~~  169 (227)
                      .+++++|+++|++++..+....+++...-            .++...+..  ..  .+++   .|+..|+.+++++|++.
T Consensus       227 ~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~  306 (764)
T PHA02716        227 ASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP  306 (764)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC
Confidence            48999999999998774443333332110            000000000  01  1121   25667889999999999


Q ss_pred             CCCCCcccccCCCCHHHHHHH--cCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Q 037129          170 DPDYPYSANNYGKTPLYMAAE--SRSSNMVLALLENRTSVSHEGPNGKTALHAAAM  223 (227)
Q Consensus       170 ~~~~~~~~~~~~~t~l~~A~~--~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~  223 (227)
                      |+++. .++..|+||||+|+.  .++.+++++|+++|++++.+|..|.||||+|+.
T Consensus       307 GAdIN-~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~  361 (764)
T PHA02716        307 GVKLH-YKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLS  361 (764)
T ss_pred             CCcee-ccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHH
Confidence            99954 789999999998764  468899999999999999999999999999865

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.7e-28  Score=200.49  Aligned_cols=182  Identities=16%  Similarity=0.068  Sum_probs=148.0

Q ss_pred             cCCHHHHHHHhc---CCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCH
Q 037129           23 QMDPIFFNAAAA---GNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTP   99 (227)
Q Consensus        23 ~~~~~l~~a~~~---g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tp   99 (227)
                      .+.+|||+|+..   |+.++|+.|++.|.+++..+..|.||||+|  +..|+.++++.+++.+...+...+..+  ..++
T Consensus        31 ~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~A--a~~g~~~v~~~~~~~Ll~~~~~~n~~~--~~~~  106 (661)
T PHA02917         31 FKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEY--TNSRHVKVNKDIAMALLEATGYSNIND--FNIF  106 (661)
T ss_pred             CCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHH--HHcCChhHHHHHHHHHHhccCCCCCCC--cchH
Confidence            456779997665   889999999999999999999999999999  999997776655554432222233332  2367


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHH--hcCCHHHHHHHHhcCCCCCcc-
Q 037129          100 LHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAV--CHQNVDVVEILTKEDPDYPYS-  176 (227)
Q Consensus       100 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~--~~~~~~~~~~ll~~~~~~~~~-  176 (227)
                      +++|+..++.+++++|+++|++++.                  ++..|.||||.|+  ..++.+++++|++.|+++... 
T Consensus       107 ~~~a~~~~~~e~vk~Ll~~Gadin~------------------~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d  168 (661)
T PHA02917        107 SYMKSKNVDVDLIKVLVEHGFDLSV------------------KCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYED  168 (661)
T ss_pred             HHHHhhcCCHHHHHHHHHcCCCCCc------------------cCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccc
Confidence            7889999999999999999999775                  7889999999543  578999999999999986521 


Q ss_pred             -cccCC-----------CCHHHHHHH-----------cCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          177 -ANNYG-----------KTPLYMAAE-----------SRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       177 -~~~~~-----------~t~l~~A~~-----------~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                       .+..|           .||||+|+.           .++.+++++|+++|++++.+|.+|.||||+|+.+|+
T Consensus       169 ~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~  241 (661)
T PHA02917        169 EDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSH  241 (661)
T ss_pred             cccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCC
Confidence             12233           599999976           468999999999999999999999999999999886

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.4e-28  Score=189.41  Aligned_cols=176  Identities=15%  Similarity=0.084  Sum_probs=153.8

Q ss_pred             HHHhcCCchHHHhhHhhhhccc------cccCCCCchhhhhhhhc--ccccccHHHHHHHHHhCCcccccccCCCCCHHH
Q 037129           30 NAAAAGNSEPFKDMAGEEIKSL------LTAKTENTILHINIISQ--ERENVSTKFVAEILEKCPLLLLQVNAKDDTPLH  101 (227)
Q Consensus        30 ~a~~~g~~~~v~~ll~~~~~~~------~~~~~g~t~L~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~  101 (227)
                      .|+..+..++++.|+++|.+++      .++..++|+||++  +.  .++.+++++|+++    |++++..  .+.||+|
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~--~~n~~n~~eiV~~LI~~----GADIn~~--~~~t~lh  154 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYY--LSNAYVEIDIVDFMVDH----GAVIYKI--ECLNAYF  154 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHH--HHhcCCCHHHHHHHHHC----CCCCCCC--CCCCHHH
Confidence            7899999999999999999987      6777899999999  66  8999999999998    6777664  4589999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCC
Q 037129          102 VAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYG  181 (227)
Q Consensus       102 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~  181 (227)
                      .|+..++.+++++|+.+|+.......            ....+..+.+++|.|...++.+++++|+++|++++ .++..|
T Consensus       155 ~A~~~~~~eIVk~Lls~Ga~~~n~~~------------~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN-~kD~~G  221 (437)
T PHA02795        155 RGICKKESSVVEFILNCGIPDENDVK------------LDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDIN-QLDAGG  221 (437)
T ss_pred             HHHHcCcHHHHHHHHhcCCccccccc------------chhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcC-cCCCCC
Confidence            99999999999999999975322100            01122356799999999999999999999999965 889999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          182 KTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       182 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      .||||.|+..|+.+++++|+++|++++.++..|.||||+|+.+|+
T Consensus       222 ~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        222 RTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999884

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.3e-27  Score=193.58  Aligned_cols=179  Identities=15%  Similarity=0.094  Sum_probs=150.2

Q ss_pred             CCHHHHHHHh--cCCchHHHhhHhhhhccccccCCCCchhhhhhhhcc-----cccccHHHHHHHHHhCCcccccccCCC
Q 037129           24 MDPIFFNAAA--AGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQE-----RENVSTKFVAEILEKCPLLLLQVNAKD   96 (227)
Q Consensus        24 ~~~~l~~a~~--~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~g   96 (227)
                      ..++++....  .++.++|+.|++.|.+++..+..|.||||.+  +..     +..+++++|++.    |.+++.++..|
T Consensus        36 ~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~--~~n~~~~~~~~~iv~~Ll~~----GadiN~~d~~G  109 (489)
T PHA02798         36 EYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTI--LSNIKDYKHMLDIVKILIEN----GADINKKNSDG  109 (489)
T ss_pred             cchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHH--HHhHHhHHhHHHHHHHHHHC----CCCCCCCCCCc
Confidence            3444553333  4478999999999999999999999999998  653     668889988886    88899999999


Q ss_pred             CCHHHHHHHcC---CHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCC---HHHHHHHHhcC
Q 037129           97 DTPLHVAAKFG---HSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQN---VDVVEILTKED  170 (227)
Q Consensus        97 ~tpl~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~---~~~~~~ll~~~  170 (227)
                      .||||+|+..+   +.+++++|+++|+..+.                  .+..|.||||+|+..++   .+++++|++.|
T Consensus       110 ~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~------------------~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~g  171 (489)
T PHA02798        110 ETPLYCLLSNGYINNLEILLFMIENGADTTL------------------LDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG  171 (489)
T ss_pred             CcHHHHHHHcCCcChHHHHHHHHHcCCCccc------------------cCCCCCcHHHHHHHcCCcchHHHHHHHHHhC
Confidence            99999999875   78999999999998765                  78999999999999987   99999999999


Q ss_pred             CCCCcccccCCCCHHHHHHHc----CcHHHHHHHHhcCCCC---------------------------------------
Q 037129          171 PDYPYSANNYGKTPLYMAAES----RSSNMVLALLENRTSV---------------------------------------  207 (227)
Q Consensus       171 ~~~~~~~~~~~~t~l~~A~~~----~~~~~v~~Ll~~g~~~---------------------------------------  207 (227)
                      +++....+..|.||||.++..    ++.+++++|+++|+++                                       
T Consensus       172 adin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dv  251 (489)
T PHA02798        172 VDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDI  251 (489)
T ss_pred             CCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCC
Confidence            997644456799999988764    4788999998887654                                       


Q ss_pred             cccCCCCCCHHHHHHHhcC
Q 037129          208 SHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       208 ~~~~~~g~t~l~~a~~~~~  226 (227)
                      +.+|..|.||||+|+..|+
T Consensus       252 N~~d~~G~TPL~~A~~~~~  270 (489)
T PHA02798        252 NQVDELGFNPLYYSVSHNN  270 (489)
T ss_pred             CCcCcCCccHHHHHHHcCc
Confidence            4466779999999998875

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.9e-26  Score=186.93  Aligned_cols=174  Identities=14%  Similarity=0.114  Sum_probs=128.6

Q ss_pred             HhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHc-----
Q 037129           32 AAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKF-----  106 (227)
Q Consensus        32 ~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~-----  106 (227)
                      ....+.++|+.|++.|++++.. ..|.|+||.++....++.+++++|++.    |.++|.++ .+.||||.|+..     
T Consensus        11 ~~~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~----GAdvn~~~-~~~tpL~~a~~~~~~~~   84 (494)
T PHA02989         11 SDTVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDN----GADVNYKG-YIETPLCAVLRNREITS   84 (494)
T ss_pred             CCcCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHc----CCCccCCC-CCCCcHHHHHhccCcch
Confidence            3457899999999999999977 479999987621333478999999997    77888876 579999999865     


Q ss_pred             -CCHHHHHHHHHhhhcccccchhhhhhHHHHH--------H---H-------H-HhccCCCCcHHHHHHhc--CCHHHHH
Q 037129          107 -GHSDIVRFLVERAKLTQHENEELESRVGAAW--------Q---I-------I-RMTNKEKNTALHEAVCH--QNVDVVE  164 (227)
Q Consensus       107 -~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~--------~---~-------~-~~~~~~~~t~l~~A~~~--~~~~~~~  164 (227)
                       ++.+++++|+++|++.+..+....+++....        .   +       + +.++..|.||||+|+..  ++.++++
T Consensus        85 ~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~  164 (494)
T PHA02989         85 NKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIK  164 (494)
T ss_pred             hhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHH
Confidence             4589999999999998876555544443110        1   1       1 34567788888887653  5778888


Q ss_pred             HHHhcCCCCCcccccCCCCHHHHHHHcC----cHHHHHHHHhcCCCCcccC
Q 037129          165 ILTKEDPDYPYSANNYGKTPLYMAAESR----SSNMVLALLENRTSVSHEG  211 (227)
Q Consensus       165 ~ll~~~~~~~~~~~~~~~t~l~~A~~~~----~~~~v~~Ll~~g~~~~~~~  211 (227)
                      +|++.|+++....+..|.||||.|+..+    +.+++++|+++|++++..+
T Consensus       165 ~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~  215 (494)
T PHA02989        165 ILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNN  215 (494)
T ss_pred             HHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccC
Confidence            8888888865335677888888876654    7788888888887665443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.94  E-value=1.1e-26  Score=195.35  Aligned_cols=195  Identities=26%  Similarity=0.273  Sum_probs=152.2

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhccc-ccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      -+|||.|+..++.++|+.+++.+.+++..+..|.|++|+|  +..+ ..+....+.+.    +.+++.....|.||||.|
T Consensus       408 vTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhva--a~~g~~~~~~~~l~~~----g~~~n~~s~~G~T~Lhla  481 (1143)
T KOG4177|consen  408 VTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVA--AKKGRYLQIARLLLQY----GADPNAVSKQGFTPLHLA  481 (1143)
T ss_pred             cceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhh--hhcccHhhhhhhHhhc----CCCcchhccccCcchhhh
Confidence            3457777888888888888777777777777778888877  7777 55555555554    666777777778888888


Q ss_pred             HHcCCHHHHHHHHHhhhcccccchhhhhhHHHHH---------------HHHHhccCCCCcHHHHHHhcCCHHHHHHHHh
Q 037129          104 AKFGHSDIVRFLVERAKLTQHENEELESRVGAAW---------------QIIRMTNKEKNTALHEAVCHQNVDVVEILTK  168 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~  168 (227)
                      +..|+.+++..+++.+...+......-.......               ...+.++..+.||||.|+..|+.++|++|++
T Consensus       482 aq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe  561 (1143)
T KOG4177|consen  482 AQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLE  561 (1143)
T ss_pred             hccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhh
Confidence            8888887777777776444333332222221111               1134577889999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       169 ~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      +|++.. .++..|+||||.|+..|+.+++.+|+++|++++..|.+|.|||++|+..||
T Consensus       562 ~gAdv~-ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~  618 (1143)
T KOG4177|consen  562 HGADVN-AKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGY  618 (1143)
T ss_pred             CCcccc-ccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcc
Confidence            999966 777999999999999999999999999999999999999999999999987

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=1.6e-27  Score=164.05  Aligned_cols=180  Identities=20%  Similarity=0.199  Sum_probs=160.8

Q ss_pred             hhccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCH
Q 037129           20 IKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTP   99 (227)
Q Consensus        20 ~~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tp   99 (227)
                      +.+++. .++.++-.|+.+.+...+..+...+-.+-.+.+|+.++  +...+.+.+..+.+.      .+|..|+.|.||
T Consensus        93 ~p~g~~-~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~sls--Vhql~L~~~~~~~~n------~VN~~De~GfTp  163 (296)
T KOG0502|consen   93 DPEGWS-ALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLS--VHQLHLDVVDLLVNN------KVNACDEFGFTP  163 (296)
T ss_pred             Cchhhh-hhhhcCCCCCcceeeeeecccccCCccccccCChhhHH--HHHHHHHHHHHHhhc------cccCccccCchH
Confidence            334444 48888888899999999988888777787899999999  888887777776654      478899999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCccccc
Q 037129          100 LHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANN  179 (227)
Q Consensus       100 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~  179 (227)
                      |.||+..|+.++|+|||+.|+.+..                  -.++..++|.+|++.|..++|+.|++++++++ ..|.
T Consensus       164 LiWAaa~G~i~vV~fLL~~GAdp~~------------------lgk~resALsLAt~ggytdiV~lLL~r~vdVN-vyDw  224 (296)
T KOG0502|consen  164 LIWAAAKGHIPVVQFLLNSGADPDA------------------LGKYRESALSLATRGGYTDIVELLLTREVDVN-VYDW  224 (296)
T ss_pred             hHHHHhcCchHHHHHHHHcCCChhh------------------hhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc-eecc
Confidence            9999999999999999999998754                  56788899999999999999999999999965 8999


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcCC
Q 037129          180 YGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSYA  227 (227)
Q Consensus       180 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  227 (227)
                      +|.|||.+|++-++.+|++.|+..|++++..+..|++++..|+..||+
T Consensus       225 NGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  225 NGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             CCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH
Confidence            999999999999999999999999999999999999999999999984

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.9e-25  Score=161.17  Aligned_cols=144  Identities=16%  Similarity=0.190  Sum_probs=124.8

Q ss_pred             CCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcC--CHHHHHHHHHhhhcccccchhhhhh
Q 037129           55 KTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFG--HSDIVRFLVERAKLTQHENEELESR  132 (227)
Q Consensus        55 ~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~  132 (227)
                      +.+.||||+|  +..++.++++.|++.       ++..+..|.||||+|+..+  +.+++++|+++|+..+.        
T Consensus        19 ~~~~~pL~~A--~~~~~~~~vk~Li~~-------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~--------   81 (209)
T PHA02859         19 YRYCNPLFYY--VEKDDIEGVKKWIKF-------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNF--------   81 (209)
T ss_pred             hccCcHHHHH--HHhCcHHHHHHHHHh-------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCc--------
Confidence            4678999999  999999999999874       4567889999999999854  89999999999998765        


Q ss_pred             HHHHHHHHHhcc-CCCCcHHHHHHhc---CCHHHHHHHHhcCCCCCcccccCCCCHHHHHHH--cCcHHHHHHHHhcCCC
Q 037129          133 VGAAWQIIRMTN-KEKNTALHEAVCH---QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAE--SRSSNMVLALLENRTS  206 (227)
Q Consensus       133 ~~~~~~~~~~~~-~~~~t~l~~A~~~---~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~--~~~~~~v~~Ll~~g~~  206 (227)
                                ++ ..|.||||+|+..   ++.+++++|+++|++++ .++..|.||||.|+.  .++.+++++|+++|++
T Consensus        82 ----------~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin-~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad  150 (209)
T PHA02859         82 ----------KTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSIT-EEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS  150 (209)
T ss_pred             ----------cCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC
Confidence                      44 5799999998764   47999999999999965 889999999999875  4689999999999999


Q ss_pred             CcccCCCCCCHHHH-HHHhcC
Q 037129          207 VSHEGPNGKTALHA-AAMRSY  226 (227)
Q Consensus       207 ~~~~~~~g~t~l~~-a~~~~~  226 (227)
                      ++.+|..|.||||. |+.+++
T Consensus       151 in~~d~~g~t~Lh~~a~~~~~  171 (209)
T PHA02859        151 FLNKDFDNNNILYSYILFHSD  171 (209)
T ss_pred             cccccCCCCcHHHHHHHhcCC
Confidence            99999999999996 444443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.6e-25  Score=181.50  Aligned_cols=183  Identities=10%  Similarity=0.021  Sum_probs=145.7

Q ss_pred             ccCCHHHHHHHhcC---CchHHHhhHhhhhccccccCCCCchhhhhhhhccc--ccccHHHHHHHHHhCCcccccccCCC
Q 037129           22 QQMDPIFFNAAAAG---NSEPFKDMAGEEIKSLLTAKTENTILHINIISQER--ENVSTKFVAEILEKCPLLLLQVNAKD   96 (227)
Q Consensus        22 ~~~~~~l~~a~~~g---~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~g   96 (227)
                      ..+.+|||+|+..|   +.++|+.|+++|++++.+|..|.||||+|  +..+  +.+++++|++.+.  +...+..+..+
T Consensus        39 ~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~A--a~~~~~~~eIv~~Ll~~~~--~~~~~~~~~~~  114 (672)
T PHA02730         39 RRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVY--SKRKYVKSQIVHLLISSYS--NASNELTSNIN  114 (672)
T ss_pred             CCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHH--HHcCCCcHHHHHHHHhcCC--CCCcccccccC
Confidence            45678899999997   58999999999999999999999999999  7766  7999999999743  33446677779


Q ss_pred             CCHHHHHHH--cCCHHHHHHHHHh-hhcccccchhhhhhHHHHHHHHHhcc-CCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 037129           97 DTPLHVAAK--FGHSDIVRFLVER-AKLTQHENEELESRVGAAWQIIRMTN-KEKNTALHEAVCHQNVDVVEILTKEDPD  172 (227)
Q Consensus        97 ~tpl~~A~~--~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~l~~A~~~~~~~~~~~ll~~~~~  172 (227)
                      ++|||.++.  .++.+++++|+.. +.+++...              +..+ ..|.+|+.++...++.++|++|++.|++
T Consensus       115 d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~--------------~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~  180 (672)
T PHA02730        115 DFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNT--------------NYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECY  180 (672)
T ss_pred             CchHHHHHHhcCCcHHHHHHHHHhcCCChhhhh--------------hhhccccchhhhhHhcCCCchHHHHHHHHcCCc
Confidence            999999988  8899999999974 44433210              0011 3688999999999999999999999999


Q ss_pred             CCcc------cccCCCCH-HHHH------HHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Q 037129          173 YPYS------ANNYGKTP-LYMA------AESRSSNMVLALLENRTSVSHEGPNGKTALHAAA  222 (227)
Q Consensus       173 ~~~~------~~~~~~t~-l~~A------~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  222 (227)
                      ..+.      .+....+| ||++      ...++.+++++|+++|++++.+|..|.||||++.
T Consensus       181 v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~  243 (672)
T PHA02730        181 STGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYW  243 (672)
T ss_pred             ccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            7422      23334444 4422      4567899999999999999999999999999633

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.4e-25  Score=174.05  Aligned_cols=165  Identities=12%  Similarity=0.032  Sum_probs=143.6

Q ss_pred             ccCCHHHHHHHh--cCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccc-----cC
Q 037129           22 QQMDPIFFNAAA--AGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQV-----NA   94 (227)
Q Consensus        22 ~~~~~~l~~a~~--~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~   94 (227)
                      ....++||.++.  .|+.++|++|+++|++++..  .+.||||.|  +..++.+++++|++.+..   ..+..     +.
T Consensus       114 ~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A--~~~~~~eIVk~Lls~Ga~---~~n~~~~~l~~~  186 (437)
T PHA02795        114 NSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRG--ICKKESSVVEFILNCGIP---DENDVKLDLYKI  186 (437)
T ss_pred             ccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHH--HHcCcHHHHHHHHhcCCc---ccccccchhhhh
Confidence            336788999999  99999999999999998764  558999999  999999999999997431   12221     23


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCC
Q 037129           95 KDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYP  174 (227)
Q Consensus        95 ~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~  174 (227)
                      .+.+++|.|+..++.+++++|+++|++.+.                  ++..|.||||+|+..|+.+++++|++.|+++.
T Consensus       187 ~~~t~l~~a~~~~~~eIve~LIs~GADIN~------------------kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN  248 (437)
T PHA02795        187 IQYTRGFLVDEPTVLEIYKLCIPYIEDINQ------------------LDAGGRTLLYRAIYAGYIDLVSWLLENGANVN  248 (437)
T ss_pred             hccchhHHHHhcCHHHHHHHHHhCcCCcCc------------------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            578999999999999999999999998765                  78999999999999999999999999999965


Q ss_pred             cccccCCCCHHHHHHHcCc--------HHHHHHHHhcCCCCcccCC
Q 037129          175 YSANNYGKTPLYMAAESRS--------SNMVLALLENRTSVSHEGP  212 (227)
Q Consensus       175 ~~~~~~~~t~l~~A~~~~~--------~~~v~~Ll~~g~~~~~~~~  212 (227)
                       .++..|.||||.|+..|+        .+++++|+++|++++....
T Consensus       249 -~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~  293 (437)
T PHA02795        249 -AVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKL  293 (437)
T ss_pred             -CcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhH
Confidence             889999999999999984        6999999999999987654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=1.4e-25  Score=170.16  Aligned_cols=156  Identities=27%  Similarity=0.309  Sum_probs=145.1

Q ss_pred             hccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHH
Q 037129           21 KQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPL  100 (227)
Q Consensus        21 ~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl  100 (227)
                      .-.+.+||..|+..|++++||.|++.|+++|..+....|||..|  |.-|+.+++++|+++    +.+.+..+..|.|.|
T Consensus        81 ~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraA--CfDG~leivKyLvE~----gad~~IanrhGhTcL  154 (615)
T KOG0508|consen   81 TIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAA--CFDGHLEIVKYLVEH----GADPEIANRHGHTCL  154 (615)
T ss_pred             ccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHH--HhcchhHHHHHHHHc----CCCCcccccCCCeeE
Confidence            34457789999999999999999999999998877777999999  999999999999987    788889999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccC
Q 037129          101 HVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNY  180 (227)
Q Consensus       101 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~  180 (227)
                      +.||..|+.+|+++|++.|++.+.                  ++..|.|+||.|+..|+++++++|++.|+.+  ..+..
T Consensus       155 mIa~ykGh~~I~qyLle~gADvn~------------------ks~kGNTALH~caEsG~vdivq~Ll~~ga~i--~~d~~  214 (615)
T KOG0508|consen  155 MIACYKGHVDIAQYLLEQGADVNA------------------KSYKGNTALHDCAESGSVDIVQLLLKHGAKI--DVDGH  214 (615)
T ss_pred             EeeeccCchHHHHHHHHhCCCcch------------------hcccCchHHHhhhhcccHHHHHHHHhCCcee--eecCC
Confidence            999999999999999999999776                  7899999999999999999999999999986  56777


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHh
Q 037129          181 GKTPLYMAAESRSSNMVLALLE  202 (227)
Q Consensus       181 ~~t~l~~A~~~~~~~~v~~Ll~  202 (227)
                      |.|||..|+..|+.++|++|++
T Consensus       215 GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  215 GMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             CCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999999999996

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=1.6e-24  Score=150.80  Aligned_cols=149  Identities=17%  Similarity=0.140  Sum_probs=127.4

Q ss_pred             hhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHH---HHHHHHhhhcc
Q 037129           46 EEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDI---VRFLVERAKLT  122 (227)
Q Consensus        46 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~---v~~Ll~~~~~~  122 (227)
                      ++.+++..+..+.++||.|  ++.|+.+.++.+++.+...+..++.++..|+||||+|+..|+.+.   +++|++.|+..
T Consensus         9 ~~~~~~~~~~~~~~~l~~a--~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi   86 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRI--CRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI   86 (166)
T ss_pred             cchHHhhhccCCCcHHHHH--HHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC
Confidence            4566666777888999999  999998766666655555677788889999999999999988654   89999999887


Q ss_pred             cccchhhhhhHHHHHHHHHhcc-CCCCcHHHHHHhcCCHHHHHHHHh-cCCCCCcccccCCCCHHHHHHHcCcHHHHHHH
Q 037129          123 QHENEELESRVGAAWQIIRMTN-KEKNTALHEAVCHQNVDVVEILTK-EDPDYPYSANNYGKTPLYMAAESRSSNMVLAL  200 (227)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~-~~~~t~l~~A~~~~~~~~~~~ll~-~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L  200 (227)
                      +.                  ++ ..|.||||+|+..++.+++++|+. .|+++. .++..|.||||+|+..++.+++++|
T Consensus        87 n~------------------~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~-~~d~~g~tpL~~A~~~~~~~iv~~L  147 (166)
T PHA02743         87 NA------------------RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG-AINYQHETAYHIAYKMRDRRMMEIL  147 (166)
T ss_pred             CC------------------CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc-CcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            64                  55 579999999999999999999995 788854 7889999999999999999999999


Q ss_pred             HhcCCCCcccCCCCC
Q 037129          201 LENRTSVSHEGPNGK  215 (227)
Q Consensus       201 l~~g~~~~~~~~~g~  215 (227)
                      +++|++++..+..|.
T Consensus       148 l~~ga~~~~~~~~~~  162 (166)
T PHA02743        148 RANGAVCDDPLSIGL  162 (166)
T ss_pred             HHcCCCCCCcccCCc
Confidence            999999999888774

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=6e-24  Score=181.19  Aligned_cols=147  Identities=22%  Similarity=0.177  Sum_probs=133.0

Q ss_pred             ccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhh
Q 037129           53 TAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESR  132 (227)
Q Consensus        53 ~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  132 (227)
                      .+..+.++|+.|  +..|+.++++.|++.    +.+++..|..|.||||+|+..|+.+++++|+++|++.+.        
T Consensus       521 ~~~~~~~~L~~A--a~~g~~~~l~~Ll~~----G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~--------  586 (823)
T PLN03192        521 DDPNMASNLLTV--ASTGNAALLEELLKA----KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHI--------  586 (823)
T ss_pred             CCccchhHHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCC--------
Confidence            334567999999  999999999999975    778899999999999999999999999999999988664        


Q ss_pred             HHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCC
Q 037129          133 VGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGP  212 (227)
Q Consensus       133 ~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~  212 (227)
                                ++.+|.||||+|+..|+.+++++|++.+...   ....+.++||.|+..|+.+++++|+++|++++.+|.
T Consensus       587 ----------~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~  653 (823)
T PLN03192        587 ----------RDANGNTALWNAISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDH  653 (823)
T ss_pred             ----------cCCCCCCHHHHHHHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCC
Confidence                      7899999999999999999999999877653   234577999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHhcC
Q 037129          213 NGKTALHAAAMRSY  226 (227)
Q Consensus       213 ~g~t~l~~a~~~~~  226 (227)
                      +|.||||+|+.+|+
T Consensus       654 ~G~TpLh~A~~~g~  667 (823)
T PLN03192        654 QGATALQVAMAEDH  667 (823)
T ss_pred             CCCCHHHHHHHCCc
Confidence            99999999999886

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=6.1e-25  Score=169.00  Aligned_cols=193  Identities=22%  Similarity=0.230  Sum_probs=166.0

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      ....++.|+..|+++-|..|+..|.+++..+.+|.|+||-+  +...+.++|+++++.    +.+|+..|..||||||.|
T Consensus        40 ~sa~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~--~id~~~e~v~~l~e~----ga~Vn~~d~e~wtPlhaa  113 (527)
T KOG0505|consen   40 DSAVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQA--CIDDNLEMVKFLVEN----GANVNAQDNEGWTPLHAA  113 (527)
T ss_pred             chHHHHhccccccHHHHHHHhccCCCccccCCccchhHHHH--HhcccHHHHHHHHHh----cCCccccccccCCcchhh
Confidence            34568899999999999999999999999999999999999  999999999999997    888999999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcccccchhhhhhH-----------------------------------HHHHHHH------Hh
Q 037129          104 AKFGHSDIVRFLVERAKLTQHENEELESRV-----------------------------------GAAWQII------RM  142 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~------~~  142 (227)
                      +..|+..++++|+.+|+.....+.+...+.                                   ....+++      ..
T Consensus       114 ascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~  193 (527)
T KOG0505|consen  114 ASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDA  193 (527)
T ss_pred             cccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccc
Confidence            999999999999999987654333221111                                   0111111      23


Q ss_pred             ccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Q 037129          143 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA  222 (227)
Q Consensus       143 ~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  222 (227)
                      .+..|.|.||.|+.+|..++.++|++.|.++ ..+|.+|+||||.|+.=+..+++++|+++|++++.....|.||+.+|.
T Consensus       194 ~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~-~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  194 RHARGATALHVAAANGYTEVAALLLQAGYSV-NIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVAD  272 (527)
T ss_pred             cccccchHHHHHHhhhHHHHHHHHHHhccCc-ccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchh
Confidence            4445899999999999999999999999995 489999999999999999999999999999999999999999998875


Q ss_pred             H
Q 037129          223 M  223 (227)
Q Consensus       223 ~  223 (227)
                      .
T Consensus       273 e  273 (527)
T KOG0505|consen  273 E  273 (527)
T ss_pred             h
Confidence            3

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=3.1e-24  Score=181.80  Aligned_cols=190  Identities=22%  Similarity=0.194  Sum_probs=146.1

Q ss_pred             hccCCHHHHHHHhcCCchHHHhhHhh--hhccccccCCCCchhh-hhhhhcccccccHHHHHHHHHhCCcccccccCCCC
Q 037129           21 KQQMDPIFFNAAAAGNSEPFKDMAGE--EIKSLLTAKTENTILH-INIISQERENVSTKFVAEILEKCPLLLLQVNAKDD   97 (227)
Q Consensus        21 ~~~~~~~l~~a~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~L~-~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   97 (227)
                      .......|+.|+..|+.+.|+.+++.  +.+++..|..|.|||| .|  +..++.++++.|++..    .    .+..|.
T Consensus        14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A--~~~~~~eiv~lLl~~g----~----~~~~G~   83 (743)
T TIGR00870        14 LSDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAA--IENENLELTELLLNLS----C----RGAVGD   83 (743)
T ss_pred             CCHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHH--HhcChHHHHHHHHhCC----C----CCCcCh
Confidence            34556789999999999999999997  8898889999999999 88  9999999999999852    2    577899


Q ss_pred             CHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCccc
Q 037129           98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSA  177 (227)
Q Consensus        98 tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~  177 (227)
                      ||||.|+. +..+.++.++.............    .............|.||||+|+.+++.++++.|+++|++++...
T Consensus        84 T~Lh~A~~-~~~~~v~~ll~~l~~~~~~~~~~----~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~  158 (743)
T TIGR00870        84 TLLHAISL-EYVDAVEAILLHLLAAFRKSGPL----ELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARA  158 (743)
T ss_pred             HHHHHHHh-ccHHHHHHHHHHHhhcccccCch----hhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCc
Confidence            99999987 33333444433322211100000    00000001134579999999999999999999999999875211


Q ss_pred             -------------ccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhc
Q 037129          178 -------------NNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRS  225 (227)
Q Consensus       178 -------------~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  225 (227)
                                   ...|.||||.|+..++.+++++|+++|++++.+|..|+||||+|+..+
T Consensus       159 ~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       159 CGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             CCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence                         135899999999999999999999999999999999999999999875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=2.9e-24  Score=158.19  Aligned_cols=153  Identities=25%  Similarity=0.220  Sum_probs=135.9

Q ss_pred             cccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcC-----CHHHHHHHHHhhhcccc
Q 037129           50 SLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFG-----HSDIVRFLVERAKLTQH  124 (227)
Q Consensus        50 ~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~-----~~~~v~~Ll~~~~~~~~  124 (227)
                      +|+.|.+|+|+|||+  +...+.++|..|+..+   -.+++.++.-|+||+++++...     +..+|+-|.+.|.....
T Consensus       261 VNlaDsNGNTALHYs--VSHaNF~VV~~LLDSg---vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaK  335 (452)
T KOG0514|consen  261 VNLADSNGNTALHYA--VSHANFDVVSILLDSG---VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAK  335 (452)
T ss_pred             hhhhcCCCCeeeeee--ecccchHHHHHHhccC---cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchh
Confidence            448899999999999  9999999999999864   3458899999999999988644     46788999888765332


Q ss_pred             cchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHh-c
Q 037129          125 ENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE-N  203 (227)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~-~  203 (227)
                                        ....|+|+|++|+..|..++++.|+..|++++ .+|.+|.|+|+.|+.+|+.+++++|+. -
T Consensus       336 ------------------AsQ~gQTALMLAVSHGr~d~vk~LLacgAdVN-iQDdDGSTALMCA~EHGhkEivklLLA~p  396 (452)
T KOG0514|consen  336 ------------------ASQHGQTALMLAVSHGRVDMVKALLACGADVN-IQDDDGSTALMCAAEHGHKEIVKLLLAVP  396 (452)
T ss_pred             ------------------hhhhcchhhhhhhhcCcHHHHHHHHHccCCCc-cccCCccHHHhhhhhhChHHHHHHHhccC
Confidence                              34679999999999999999999999999966 999999999999999999999999997 5


Q ss_pred             CCCCcccCCCCCCHHHHHHHhcC
Q 037129          204 RTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       204 g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ++|+...|.+|.|+|.+|...||
T Consensus       397 ~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  397 SCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             cccceeecCCCchhhhhHHhcCc
Confidence            79999999999999999999886

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.91  E-value=7.2e-24  Score=178.67  Aligned_cols=186  Identities=24%  Similarity=0.216  Sum_probs=153.7

Q ss_pred             ccchhhhccCCHHHHHHHhcC-CchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHH-----------
Q 037129           15 DSNREIKQQMDPIFFNAAAAG-NSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEIL-----------   82 (227)
Q Consensus        15 ~~~~~~~~~~~~~l~~a~~~g-~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~-----------   82 (227)
                      .++..+..+ .+++|.|+..| ..+....+++.+.+++.....|.||||+|  +..|+.+.+..+++..           
T Consensus       432 ~~~~~~~lG-~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhla--aq~Gh~~~~~llle~~~~~~~~~~~~l  508 (1143)
T KOG4177|consen  432 SPNAKAKLG-YTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLA--AQEGHTEVVQLLLEGGANDNLDAKKGL  508 (1143)
T ss_pred             ChhhHhhcC-CChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhh--hccCCchHHHHhhhcCCccCccchhcc
Confidence            444555555 55577777777 66666666667777777777777777777  7777777777776632           


Q ss_pred             ------------------HhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhcc
Q 037129           83 ------------------EKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTN  144 (227)
Q Consensus        83 ------------------~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (227)
                                        ...+..++.++..|.||||.|+.+|+.++|++|+++|++.+.                  ++
T Consensus       509 ~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~a------------------k~  570 (1143)
T KOG4177|consen  509 TPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNA------------------KD  570 (1143)
T ss_pred             chhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccc------------------cC
Confidence                              112667788888999999999999999999999999999765                  78


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCC-----CcccCCCCCCHHH
Q 037129          145 KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTS-----VSHEGPNGKTALH  219 (227)
Q Consensus       145 ~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~l~  219 (227)
                      ..|+||||.|+..|+.++++.|+++|+++ +..+.+|.|||++|++.|+.++++.|...+.+     .......|.+|..
T Consensus       571 ~~G~TPLH~Aa~~G~~~i~~LLlk~GA~v-na~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~  649 (1143)
T KOG4177|consen  571 KLGYTPLHQAAQQGHNDIAELLLKHGASV-NAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPED  649 (1143)
T ss_pred             CCCCChhhHHHHcChHHHHHHHHHcCCCC-CcccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhh
Confidence            99999999999999999999999999995 49999999999999999999999999999998     7777778889987


Q ss_pred             HHH
Q 037129          220 AAA  222 (227)
Q Consensus       220 ~a~  222 (227)
                      .+-
T Consensus       650 v~e  652 (1143)
T KOG4177|consen  650 VAE  652 (1143)
T ss_pred             HHH
Confidence            654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=3.9e-23  Score=167.81  Aligned_cols=178  Identities=19%  Similarity=0.146  Sum_probs=142.4

Q ss_pred             cCCHHHH--HHHhcCCchHHHhhHh--------------------------------hhhcccc----------------
Q 037129           23 QMDPIFF--NAAAAGNSEPFKDMAG--------------------------------EEIKSLL----------------   52 (227)
Q Consensus        23 ~~~~~l~--~a~~~g~~~~v~~ll~--------------------------------~~~~~~~----------------   52 (227)
                      .+.+|||  .+...|+.++|+.|++                                .|+|..+                
T Consensus       234 ~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  313 (672)
T PHA02730        234 GGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMR  313 (672)
T ss_pred             CCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhh
Confidence            4556798  4556677999999998                                6777655                


Q ss_pred             ----ccCCCCc---------------------hhhhhhhhcc---cccccHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 037129           53 ----TAKTENT---------------------ILHINIISQE---RENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAA  104 (227)
Q Consensus        53 ----~~~~g~t---------------------~L~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~  104 (227)
                          .+..|.+                     .||.-  ...   .+.+++++|+++    |.+++.. ..|.||||+|+
T Consensus       314 ~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y--~~~~~~v~ieIvelLIs~----GAdIN~k-~~G~TpLH~Aa  386 (672)
T PHA02730        314 SITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINY--LHYGDMVSIPILRCMLDN----GATMDKT-TDNNYPLHDYF  386 (672)
T ss_pred             ccccccccccchhHHHHHHHhhhccchhHHHHHHHHH--HhcCCcCcHHHHHHHHHC----CCCCCcC-CCCCcHHHHHH
Confidence                5556655                     66665  443   468899999987    7778875 78999999999


Q ss_pred             HcCC----HHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHH---HHhcC---------CHHHHHHHHh
Q 037129          105 KFGH----SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHE---AVCHQ---------NVDVVEILTK  168 (227)
Q Consensus       105 ~~~~----~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~---A~~~~---------~~~~~~~ll~  168 (227)
                      ..++    .+++++|+++|+..+                .+.++..|.||||.   |...+         ..+++++|++
T Consensus       387 ~~nnn~i~~eIvelLIs~Ga~~d----------------IN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs  450 (672)
T PHA02730        387 VNNNNIVDVNVVRFIVENNGHMA----------------INHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSK  450 (672)
T ss_pred             HHcCCcchHHHHHHHHHcCCCcc----------------ccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHh
Confidence            8875    899999999987422                12367889999984   33232         2357999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCC-CCCCHHHHHHHh
Q 037129          169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGP-NGKTALHAAAMR  224 (227)
Q Consensus       169 ~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~a~~~  224 (227)
                      +|++++ .++..|.||||+|+..++.+++++|+++|++++.++. .|.||||+|+.+
T Consensus       451 ~GADIN-akD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        451 YMDDID-MIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYR  506 (672)
T ss_pred             cccchh-ccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHh
Confidence            999955 8899999999999999999999999999999999997 599999999864

>PHA02917 ankyrin-like protein; Provisional

Probab=99.90  E-value=4.6e-23  Score=170.43  Aligned_cols=160  Identities=18%  Similarity=0.163  Sum_probs=130.9

Q ss_pred             chHHHhhHhhhhccccccCCCCchhhhhhhhcc---cccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHH---
Q 037129           37 SEPFKDMAGEEIKSLLTAKTENTILHINIISQE---RENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSD---  110 (227)
Q Consensus        37 ~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~---  110 (227)
                      ++.|+.|+..+...+.+|..|.||||+|  +..   |+.+++++|++.    +.+++..+..|+||||+|+..|+.+   
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a--~~~~~~~~~~~v~~Ll~~----ga~v~~~~~~g~TpL~~Aa~~g~~~v~~   85 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAY--LFNEHCNNVEVVKLLLDS----GTNPLHKNWRQLTPLEEYTNSRHVKVNK   85 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHH--HHhhhcCcHHHHHHHHHC----CCCccccCCCCCCHHHHHHHcCChhHHH
Confidence            5678899987777778899999999997  554   889999999986    7788889999999999999999854   


Q ss_pred             -HHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHH-
Q 037129          111 -IVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMA-  188 (227)
Q Consensus       111 -~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A-  188 (227)
                       +++.|++.+...+.                    .+..+++++|+.+++.+++++|++.|+++. ..+..|.||||.| 
T Consensus        86 ~~~~~Ll~~~~~~n~--------------------~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin-~~d~~g~T~L~~~~  144 (661)
T PHA02917         86 DIAMALLEATGYSNI--------------------NDFNIFSYMKSKNVDVDLIKVLVEHGFDLS-VKCENHRSVIENYV  144 (661)
T ss_pred             HHHHHHHhccCCCCC--------------------CCcchHHHHHhhcCCHHHHHHHHHcCCCCC-ccCCCCccHHHHHH
Confidence             56778776543221                    112366788999999999999999999955 8899999999965 


Q ss_pred             -HHcCcHHHHHHHHhcCCCCcccCCC---C-----------CCHHHHHHH
Q 037129          189 -AESRSSNMVLALLENRTSVSHEGPN---G-----------KTALHAAAM  223 (227)
Q Consensus       189 -~~~~~~~~v~~Ll~~g~~~~~~~~~---g-----------~t~l~~a~~  223 (227)
                       +..++.+++++|+++|++++..|..   |           .||||+|+.
T Consensus       145 a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~  194 (661)
T PHA02917        145 MTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYII  194 (661)
T ss_pred             HccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHh
Confidence             3578999999999999999866542   3           599999985

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=4.7e-23  Score=144.10  Aligned_cols=136  Identities=18%  Similarity=0.165  Sum_probs=116.6

Q ss_pred             cccCCCCchhhhhhhhcccccccHHHHHHHH--HhCCcccccccCCCCCHHHHHHHcCC----HHHHHHHHHhhhccccc
Q 037129           52 LTAKTENTILHINIISQERENVSTKFVAEIL--EKCPLLLLQVNAKDDTPLHVAAKFGH----SDIVRFLVERAKLTQHE  125 (227)
Q Consensus        52 ~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~g~tpl~~A~~~~~----~~~v~~Ll~~~~~~~~~  125 (227)
                      ..+..|.|+||+|  +..|+.++++.|+...  ...+..++.+|..|+||||+|+..|+    .+++++|++.|+..+. 
T Consensus        16 ~~~~~g~t~Lh~A--a~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~-   92 (169)
T PHA02741         16 EKNSEGENFFHEA--ARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINA-   92 (169)
T ss_pred             ccccCCCCHHHHH--HHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCC-
Confidence            5667899999999  9999999999987643  12356688899999999999999998    5889999999988654 


Q ss_pred             chhhhhhHHHHHHHHHhccC-CCCcHHHHHHhcCCHHHHHHHHh-cCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhc
Q 037129          126 NEELESRVGAAWQIIRMTNK-EKNTALHEAVCHQNVDVVEILTK-EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN  203 (227)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~-~~~t~l~~A~~~~~~~~~~~ll~-~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  203 (227)
                                       ++. .|.||||+|+..++.+++++|++ .++++ ...+..|.|||++|+..++.+++++|++.
T Consensus        93 -----------------~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         93 -----------------QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             -----------------CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence                             554 89999999999999999999997 47774 47889999999999999999999999998


Q ss_pred             CCCCc
Q 037129          204 RTSVS  208 (227)
Q Consensus       204 g~~~~  208 (227)
                      ++...
T Consensus       155 ~~~~~  159 (169)
T PHA02741        155 VATSR  159 (169)
T ss_pred             HHHhc
Confidence            76543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.90  E-value=6.5e-23  Score=153.41  Aligned_cols=157  Identities=10%  Similarity=0.078  Sum_probs=135.5

Q ss_pred             cchhhhccCCHHHHHHHhcCCchHHHhhHhhhhccccc----cCCCCchhhhhhhhcccccccHHHHHHHHHhCCccccc
Q 037129           16 SNREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLT----AKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQ   91 (227)
Q Consensus        16 ~~~~~~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~----~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~   91 (227)
                      ....|..+.+++|+.|+..|+.++++.|++.|++++..    +..|.||||+|  +..++.+++++|++.    |++++.
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~A--a~~~~~eivklLL~~----GADVN~   98 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYA--IDCDNDDAAKLLIRY----GADVNR   98 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCcCc
Confidence            34577888999999999999999999999999999875    45899999999  999999999999986    778887


Q ss_pred             c-cCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcC
Q 037129           92 V-NAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKED  170 (227)
Q Consensus        92 ~-~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~  170 (227)
                      + +..|.||||.|+..++.+++++|+.+|+..+.                  ++..|.||||+|+..++..++..+... 
T Consensus        99 ~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~------------------kd~~G~TpL~~A~~~~~~~~~~~~~~~-  159 (300)
T PHA02884         99 YAEEAKITPLYISVLHGCLKCLEILLSYGADINI------------------QTNDMVTPIELALMICNNFLAFMICDN-  159 (300)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC------------------CCCCCCCHHHHHHHhCChhHHHHhcCC-
Confidence            5 46799999999999999999999999998765                  788999999999998888877665422 


Q ss_pred             CCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 037129          171 PDYPYSANNYGKTPLYMAAESRSSNMVLALLENRT  205 (227)
Q Consensus       171 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~  205 (227)
                           ..+..+.+|++.+   ++.+++++|++++.
T Consensus       160 -----~~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        160 -----EISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             -----cccccccChhhhh---ccHHHHHHHHHHHH
Confidence                 3456677888875   46899999999987

>PHA02792 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.6e-22  Score=162.68  Aligned_cols=181  Identities=11%  Similarity=0.109  Sum_probs=135.8

Q ss_pred             ccCCHHHHHHHhcC-------CchHHHhhHhhhhccccccCCCCchhhhhhhhccc--ccccHHHHHHHHHhC-------
Q 037129           22 QQMDPIFFNAAAAG-------NSEPFKDMAGEEIKSLLTAKTENTILHINIISQER--ENVSTKFVAEILEKC-------   85 (227)
Q Consensus        22 ~~~~~~l~~a~~~g-------~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~--~~~~~~~l~~~~~~~-------   85 (227)
                      ..+.+|||+|+..+       +.++++.|+++|.+++..|..|.||||+|  +...  ..++++.|++.-...       
T Consensus       173 ~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~--~~~~~i~~ei~~~L~~~~~~~~~~~~~l  250 (631)
T PHA02792        173 RMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYY--VDKCDIKREIFDALFDSNYSGNELMNIL  250 (631)
T ss_pred             CCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHH--HHcccchHHHHHHHHhccccccchHhHH
Confidence            44677899999999       89999999999999999999999999999  8888  788888876641100       


Q ss_pred             -----------Ccccc--cc------------------------------------------------------------
Q 037129           86 -----------PLLLL--QV------------------------------------------------------------   92 (227)
Q Consensus        86 -----------~~~~~--~~------------------------------------------------------------   92 (227)
                                 +..++  ..                                                            
T Consensus       251 ~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~  330 (631)
T PHA02792        251 SNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDE  330 (631)
T ss_pred             HHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHC
Confidence                       00000  00                                                            


Q ss_pred             -----cCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCC--CCcHHHHHHhcCCH---HH
Q 037129           93 -----NAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKE--KNTALHEAVCHQNV---DV  162 (227)
Q Consensus        93 -----~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~t~l~~A~~~~~~---~~  162 (227)
                           ......+++.|+..|+.+++++|+++|++.+                  .++..  +.||||+|......   ++
T Consensus       331 Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN------------------~kD~~g~~~TpLh~A~~n~~~~v~~I  392 (631)
T PHA02792        331 GATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVV------------------EDDDNIINIMPLFPTLSIHESDVLSI  392 (631)
T ss_pred             CCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchh------------------hhcCCCCChhHHHHHHHhccHhHHHH
Confidence                 0012233444444555555555555554432                  24555  46999998876654   45


Q ss_pred             HHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Q 037129          163 VEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAM  223 (227)
Q Consensus       163 ~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~  223 (227)
                      +++++++|++++ .++..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+.
T Consensus       393 lklLIs~GADIN-~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        393 LKLCKPYIDDIN-KIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHHHhcCCccc-cccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            788899999965 789999999999999999999999999999999999999999999975

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.89  E-value=7.4e-23  Score=173.44  Aligned_cols=199  Identities=19%  Similarity=0.095  Sum_probs=144.0

Q ss_pred             cchhhhccCCHHHH-HHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcc------
Q 037129           16 SNREIKQQMDPIFF-NAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLL------   88 (227)
Q Consensus        16 ~~~~~~~~~~~~l~-~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~------   88 (227)
                      .+..|.. +.+||| .|+..++.++++.|++.|.    .+..|.||||.|  +. +..+.++.++..+...+..      
T Consensus        45 in~~d~~-G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A--~~-~~~~~v~~ll~~l~~~~~~~~~~~~  116 (743)
T TIGR00870        45 INCPDRL-GRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAI--SL-EYVDAVEAILLHLLAAFRKSGPLEL  116 (743)
T ss_pred             CCCcCcc-chhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHH--Hh-ccHHHHHHHHHHHhhcccccCchhh
Confidence            3334444 455699 8888889999999998765    456899999999  76 3344555555554433211      


Q ss_pred             cc----cccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHH
Q 037129           89 LL----QVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVE  164 (227)
Q Consensus        89 ~~----~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~  164 (227)
                      ++    .....|.||||+|+..|+.+++++|+++|++.+............    .......|.||||.|+..++.++++
T Consensus       117 ~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~----~~~~~~~g~tpL~~Aa~~~~~~iv~  192 (743)
T TIGR00870       117 ANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQ----GVDSFYHGESPLNAAACLGSPSIVA  192 (743)
T ss_pred             hccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCC----CCCcccccccHHHHHHHhCCHHHHH
Confidence            11    123469999999999999999999999999887422110000000    0011246899999999999999999


Q ss_pred             HHHhcCCCCCcccccCCCCHHHHHHHcC---------cHHHHHHHHhcCCCC-------cccCCCCCCHHHHHHHhcCC
Q 037129          165 ILTKEDPDYPYSANNYGKTPLYMAAESR---------SSNMVLALLENRTSV-------SHEGPNGKTALHAAAMRSYA  227 (227)
Q Consensus       165 ~ll~~~~~~~~~~~~~~~t~l~~A~~~~---------~~~~v~~Ll~~g~~~-------~~~~~~g~t~l~~a~~~~~~  227 (227)
                      +|++.|+++ +.+|..|+||||.|+..+         ...+.+++++.++..       +..|.+|.|||++|+..|+.
T Consensus       193 lLl~~gadi-n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~  270 (743)
T TIGR00870       193 LLSEDPADI-LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRI  270 (743)
T ss_pred             HHhcCCcch-hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCc
Confidence            999999885 488999999999999886         334667777766554       66799999999999998863

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.89  E-value=6.3e-24  Score=146.45  Aligned_cols=166  Identities=16%  Similarity=0.121  Sum_probs=150.4

Q ss_pred             HHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHH
Q 037129           26 PIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAK  105 (227)
Q Consensus        26 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~  105 (227)
                      .++.+++...+++++..+.+..++  .+|+.|.|||.+|  +..|++.+|++|++.    |.+.+...+...++|.+|++
T Consensus       131 s~~slsVhql~L~~~~~~~~n~VN--~~De~GfTpLiWA--aa~G~i~vV~fLL~~----GAdp~~lgk~resALsLAt~  202 (296)
T KOG0502|consen  131 SPLSLSVHQLHLDVVDLLVNNKVN--ACDEFGFTPLIWA--AAKGHIPVVQFLLNS----GADPDALGKYRESALSLATR  202 (296)
T ss_pred             ChhhHHHHHHHHHHHHHHhhcccc--CccccCchHhHHH--HhcCchHHHHHHHHc----CCChhhhhhhhhhhHhHHhc
Confidence            358888888899999888877766  9999999999999  999999999999997    77777788888999999999


Q ss_pred             cCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHH
Q 037129          106 FGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPL  185 (227)
Q Consensus       106 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l  185 (227)
                      .|..++|++||..+.+.+.                  .|.+|-|||.+|++.++.++++.|+..|+++. ..+.+|.+++
T Consensus       203 ggytdiV~lLL~r~vdVNv------------------yDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t-~e~dsGy~~m  263 (296)
T KOG0502|consen  203 GGYTDIVELLLTREVDVNV------------------YDWNGGTPLLYAVRGNHVKCVESLLNSGADVT-QEDDSGYWIM  263 (296)
T ss_pred             CChHHHHHHHHhcCCCcce------------------eccCCCceeeeeecCChHHHHHHHHhcCCCcc-cccccCCcHH
Confidence            9999999999999998765                  78999999999999999999999999999955 8888999999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHH
Q 037129          186 YMAAESRSSNMVLALLENRTSVSHEGPNGKTALH  219 (227)
Q Consensus       186 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~  219 (227)
                      ..|+..|+- +|+..+++-+....+|..-++|+|
T Consensus       264 dlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  264 DLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            999999998 899999988888888887777764

>PHA02792 ankyrin-like protein; Provisional

Probab=99.89  E-value=3.5e-22  Score=160.79  Aligned_cols=79  Identities=11%  Similarity=0.112  Sum_probs=66.9

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccC--CCCHHHHHHHcCcH---HHHHHHHhcCCCCcccCCCCCCHHHHH
Q 037129          147 KNTALHEAVCHQNVDVVEILTKEDPDYPYSANNY--GKTPLYMAAESRSS---NMVLALLENRTSVSHEGPNGKTALHAA  221 (227)
Q Consensus       147 ~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~--~~t~l~~A~~~~~~---~~v~~Ll~~g~~~~~~~~~g~t~l~~a  221 (227)
                      ....++.|+..++.+++++|+++|+++. ..+..  +.||||.|......   +++++|+++|++++.+|..|.||||+|
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs~GADIN-~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~A  417 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILKNGNVVV-EDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYC  417 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCchh-hhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHH
Confidence            4556888999999999999999999965 55655  46999988776654   457889999999999999999999999


Q ss_pred             HHhcC
Q 037129          222 AMRSY  226 (227)
Q Consensus       222 ~~~~~  226 (227)
                      +.+++
T Consensus       418 a~~~n  422 (631)
T PHA02792        418 IESHS  422 (631)
T ss_pred             HHcCC
Confidence            98765

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=6.1e-22  Score=137.90  Aligned_cols=140  Identities=14%  Similarity=0.118  Sum_probs=113.9

Q ss_pred             cchhhhccCCHHHHHHHhcCCch----HHHhhHhhhhccccccCCCCchhhhhhhhccccccc---HHHHHHHHHhCCcc
Q 037129           16 SNREIKQQMDPIFFNAAAAGNSE----PFKDMAGEEIKSLLTAKTENTILHINIISQERENVS---TKFVAEILEKCPLL   88 (227)
Q Consensus        16 ~~~~~~~~~~~~l~~a~~~g~~~----~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~---~~~l~~~~~~~~~~   88 (227)
                      ++..+....+ +||.||..|+.+    ++++|++.+.+++..|..|.||||+|  +..++.+.   +++|++.    +.+
T Consensus        13 ~~~~~~~~~~-~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~A--a~~g~~~~~~~i~~Ll~~----Gad   85 (166)
T PHA02743         13 AVEIDEDEQN-TFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMV--AWYDRANAVMKIELLVNM----GAD   85 (166)
T ss_pred             HhhhccCCCc-HHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHH--HHhCccCHHHHHHHHHHc----CCC
Confidence            3344444444 599999999984    55566677888778888999999999  99988776   5666664    788


Q ss_pred             ccccc-CCCCCHHHHHHHcCCHHHHHHHHH-hhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHH
Q 037129           89 LLQVN-AKDDTPLHVAAKFGHSDIVRFLVE-RAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEIL  166 (227)
Q Consensus        89 ~~~~~-~~g~tpl~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~l  166 (227)
                      ++.++ ..|.||||+|+..++.+++++|++ .|.....                  ++..|.||||+|+..++.+++++|
T Consensus        86 in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~------------------~d~~g~tpL~~A~~~~~~~iv~~L  147 (166)
T PHA02743         86 INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGA------------------INYQHETAYHIAYKMRDRRMMEIL  147 (166)
T ss_pred             CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccC------------------cCCCCCCHHHHHHHcCCHHHHHHH
Confidence            88888 589999999999999999999996 6877554                  788999999999999999999999


Q ss_pred             HhcCCCCCcccccCC
Q 037129          167 TKEDPDYPYSANNYG  181 (227)
Q Consensus       167 l~~~~~~~~~~~~~~  181 (227)
                      ++.|+++. .++..|
T Consensus       148 l~~ga~~~-~~~~~~  161 (166)
T PHA02743        148 RANGAVCD-DPLSIG  161 (166)
T ss_pred             HHcCCCCC-CcccCC
Confidence            99998865 444444

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=1.1e-21  Score=137.14  Aligned_cols=124  Identities=17%  Similarity=0.184  Sum_probs=103.9

Q ss_pred             ccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCC----HHHHHH
Q 037129           90 LQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQN----VDVVEI  165 (227)
Q Consensus        90 ~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~----~~~~~~  165 (227)
                      +.++..|.||||+|+..|+.+++++|+.......            ....++.++..|.||||+|+..++    .+++++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~------------~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~   82 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDC------------HAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDH   82 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccch------------hhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHH
Confidence            4568899999999999999999999875421000            000134578999999999999998    588999


Q ss_pred             HHhcCCCCCccccc-CCCCHHHHHHHcCcHHHHHHHHh-cCCCCcccCCCCCCHHHHHHHhcC
Q 037129          166 LTKEDPDYPYSANN-YGKTPLYMAAESRSSNMVLALLE-NRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       166 ll~~~~~~~~~~~~-~~~t~l~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      |++.|+++. .++. .|.||||+|+..++.+++++|++ .|++++..+..|.|||++|+..|+
T Consensus        83 Ll~~gadin-~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~  144 (169)
T PHA02741         83 LIELGADIN-AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNED  144 (169)
T ss_pred             HHHcCCCCC-CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCC
Confidence            999999965 5564 89999999999999999999998 599999999999999999998875

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=1.8e-22  Score=139.32  Aligned_cols=134  Identities=22%  Similarity=0.222  Sum_probs=106.1

Q ss_pred             cccCCCCchhhhhhhhcccccccHHHHHHHHH---hCCcccccccCCCCCHHHHHHHcCCH---HHHHHHHHhhhccccc
Q 037129           52 LTAKTENTILHINIISQERENVSTKFVAEILE---KCPLLLLQVNAKDDTPLHVAAKFGHS---DIVRFLVERAKLTQHE  125 (227)
Q Consensus        52 ~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~g~tpl~~A~~~~~~---~~v~~Ll~~~~~~~~~  125 (227)
                      ..|..|.||||+|  +..|+.  ++++.....   ..+..++..|..|+||||+|+..|+.   +++++|++.|+..+. 
T Consensus        12 ~~d~~g~tpLh~A--~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~-   86 (154)
T PHA02736         12 EPDIEGENILHYL--CRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADING-   86 (154)
T ss_pred             hcCCCCCCHHHHH--HHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccc-
Confidence            5667899999999  888873  333322211   11223445688899999999999886   468899999987654 


Q ss_pred             chhhhhhHHHHHHHHHhcc-CCCCcHHHHHHhcCCHHHHHHHHhc-CCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhc
Q 037129          126 NEELESRVGAAWQIIRMTN-KEKNTALHEAVCHQNVDVVEILTKE-DPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN  203 (227)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~-~~~~t~l~~A~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  203 (227)
                                       ++ ..|.||||+|+..++.+++++|++. +.++ +..+..|.||||+|+..++.+++++|+++
T Consensus        87 -----------------~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~  148 (154)
T PHA02736         87 -----------------KERVFGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNYAFKTPYYVACERHDAKMMNILRAK  148 (154)
T ss_pred             -----------------cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence                             55 5899999999999999999999974 7774 47889999999999999999999999999


Q ss_pred             CCCCc
Q 037129          204 RTSVS  208 (227)
Q Consensus       204 g~~~~  208 (227)
                      |++.+
T Consensus       149 ga~~~  153 (154)
T PHA02736        149 GAQCK  153 (154)
T ss_pred             CCCCC
Confidence            98765

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.6e-21  Score=145.99  Aligned_cols=125  Identities=17%  Similarity=0.095  Sum_probs=75.6

Q ss_pred             cccCCCCc-hhhhhhhhcccccccHHHHHHHHHhCCcccccc----cCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccc
Q 037129           52 LTAKTENT-ILHINIISQERENVSTKFVAEILEKCPLLLLQV----NAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHEN  126 (227)
Q Consensus        52 ~~~~~g~t-~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~  126 (227)
                      .+|..|.+ +||.|  +..++.+++++|++.    |.+++.+    +..|.||||+|+..++.+++++|+++|++++.  
T Consensus        27 ~~d~~~~~~lL~~A--~~~~~~eivk~LL~~----GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~--   98 (300)
T PHA02884         27 KKNKICIANILYSS--IKFHYTDIIDAILKL----GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNR--   98 (300)
T ss_pred             ccCcCCCCHHHHHH--HHcCCHHHHHHHHHC----CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCc--
Confidence            34555544 33445  555666666666665    4555554    24566666666666666666666666666543  


Q ss_pred             hhhhhhHHHHHHHHHhc-cCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHH
Q 037129          127 EELESRVGAAWQIIRMT-NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL  201 (227)
Q Consensus       127 ~~~~~~~~~~~~~~~~~-~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll  201 (227)
                                      . +..|.||||+|+..++.+++++|++.|+++. .++..|.||||.|+..++.+++..+.
T Consensus        99 ----------------~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin-~kd~~G~TpL~~A~~~~~~~~~~~~~  157 (300)
T PHA02884         99 ----------------YAEEAKITPLYISVLHGCLKCLEILLSYGADIN-IQTNDMVTPIELALMICNNFLAFMIC  157 (300)
T ss_pred             ----------------ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHhCChhHHHHhc
Confidence                            2 2356666666666666666666666666633 55666666666666666666654443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.88  E-value=4e-22  Score=159.11  Aligned_cols=197  Identities=22%  Similarity=0.178  Sum_probs=156.6

Q ss_pred             chhhhccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCC
Q 037129           17 NREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKD   96 (227)
Q Consensus        17 ~~~~~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   96 (227)
                      +..|.. ..+.||.|+.+|+.+.++.|++...-...++..|.+|||+|  ++.|+.++++.++..    +..+|.....|
T Consensus        43 n~qd~~-gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhla--aw~g~~e~vkmll~q----~d~~na~~~e~  115 (854)
T KOG0507|consen   43 NLQDYS-GFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLA--AWNGNLEIVKMLLLQ----TDILNAVNIEN  115 (854)
T ss_pred             cccCcc-chhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEeh--hhcCcchHHHHHHhc----ccCCCcccccC
Confidence            344444 44569999999999999999996655558888999999999  999999999999987    46688889999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHH-----------------------HHhccCCCCcHHHH
Q 037129           97 DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQI-----------------------IRMTNKEKNTALHE  153 (227)
Q Consensus        97 ~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~t~l~~  153 (227)
                      .||||.|+..|+.+++.+|+.+|++.-..+............+                       ...++..+.+|||.
T Consensus       116 ~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHl  195 (854)
T KOG0507|consen  116 ETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHL  195 (854)
T ss_pred             cCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcch
Confidence            9999999999999999999999998876555433322222111                       01233456788899


Q ss_pred             HHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Q 037129          154 AVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA  222 (227)
Q Consensus       154 A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  222 (227)
                      |+.+|+.++++.|++.|.+++. .. ...|+||.|+.+|..++|++|++.|.+.+.++.+|.|+|.+..
T Consensus       196 aakngh~~~~~~ll~ag~din~-~t-~~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~  262 (854)
T KOG0507|consen  196 AAKNGHVECMQALLEAGFDINY-TT-EDGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIII  262 (854)
T ss_pred             hhhcchHHHHHHHHhcCCCccc-cc-ccchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHH
Confidence            9999999999999988888753 23 3458899999999999999999999999999999988887654

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.86  E-value=7.4e-22  Score=157.61  Aligned_cols=176  Identities=27%  Similarity=0.305  Sum_probs=153.4

Q ss_pred             HHHHHHHhcCCchHHHhhHh-------------hhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccc
Q 037129           26 PIFFNAAAAGNSEPFKDMAG-------------EEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQV   92 (227)
Q Consensus        26 ~~l~~a~~~g~~~~v~~ll~-------------~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~   92 (227)
                      .-+..|+..|++++++.|++             ...+.+..|.+|.|+||.|  +.+|+.++++.|++.    ...++..
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha--~Lng~~~is~llle~----ea~ldl~   78 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHA--VLNGQNQISKLLLDY----EALLDLC   78 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHH--HhcCchHHHHHHhcc----hhhhhhh
Confidence            45788999999999999997             2244557788999999999  999999999999986    6678888


Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 037129           93 NAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD  172 (227)
Q Consensus        93 ~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~  172 (227)
                      +..|.+|||+|+..|+.+++++++.++...+.                  ....|.||||.|++.++.+++.+|+++|++
T Consensus        79 d~kg~~plhlaaw~g~~e~vkmll~q~d~~na------------------~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad  140 (854)
T KOG0507|consen   79 DTKGILPLHLAAWNGNLEIVKMLLLQTDILNA------------------VNIENETPLHLAAQHGHLEVVFYLLKKNAD  140 (854)
T ss_pred             hccCcceEEehhhcCcchHHHHHHhcccCCCc------------------ccccCcCccchhhhhcchHHHHHHHhcCCC
Confidence            89999999999999999999999999966543                  789999999999999999999999999999


Q ss_pred             CCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCC--------cccCCCCCCHHHHHHHhcC
Q 037129          173 YPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV--------SHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       173 ~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~--------~~~~~~g~t~l~~a~~~~~  226 (227)
                       +..++..+.|+|..|++.|..++++.|++.....        ..++..+-+|||+|+++||
T Consensus       141 -p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh  201 (854)
T KOG0507|consen  141 -PFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGH  201 (854)
T ss_pred             -ccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcch
Confidence             5589999999999999999999999999874332        2234456789999999987

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=6.6e-21  Score=131.48  Aligned_cols=123  Identities=15%  Similarity=0.185  Sum_probs=98.7

Q ss_pred             ccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCH---HHHHHH
Q 037129           90 LQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNV---DVVEIL  166 (227)
Q Consensus        90 ~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~---~~~~~l  166 (227)
                      +.+|..|.||||+|++.|+  +++++...+.....           ....+...+..|.||||+|+..++.   +++++|
T Consensus        11 ~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~-----------~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~L   77 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGG--VTDLLAFKNAISDE-----------NRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLL   77 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhcch-----------hHHHHHHhcCCCCEEEEeecccCchhHHHHHHHH
Confidence            4568889999999999998  34444433322111           0112344688999999999999887   468899


Q ss_pred             HhcCCCCCcccc-cCCCCHHHHHHHcCcHHHHHHHHh-cCCCCcccCCCCCCHHHHHHHhcC
Q 037129          167 TKEDPDYPYSAN-NYGKTPLYMAAESRSSNMVLALLE-NRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       167 l~~~~~~~~~~~-~~~~t~l~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ++.|+++. .++ ..|.||||+|+..++.+++++|++ .|++++.++..|.||||+|+..|+
T Consensus        78 l~~gadin-~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~  138 (154)
T PHA02736         78 MEWGADIN-GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHD  138 (154)
T ss_pred             HHcCCCcc-ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCC
Confidence            99999965 565 589999999999999999999998 599999999999999999998875

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.84  E-value=2.2e-20  Score=124.44  Aligned_cols=140  Identities=19%  Similarity=0.136  Sum_probs=71.4

Q ss_pred             HHHHHHhcCCchHHHhhHhhhhcc-ccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHH
Q 037129           27 IFFNAAAAGNSEPFKDMAGEEIKS-LLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAK  105 (227)
Q Consensus        27 ~l~~a~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~  105 (227)
                      .+.+|+..+.+..|+.|++...+. |.+|.+|.||||-|  +.+|+.++++.|+..    +.+.+.+...||||||.||+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRA--aYn~h~div~~ll~~----gAn~~a~T~~GWTPLhSAck  139 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRA--AYNGHLDIVHELLLS----GANKEAKTNEGWTPLHSACK  139 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHH--HhcCchHHHHHHHHc----cCCcccccccCccchhhhhc
Confidence            345555555555555555543332 25555555555555  555555555555543    44444555555555555555


Q ss_pred             cCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcC-CHHHHHHHHhcCCCCCcccccCCCCH
Q 037129          106 FGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQ-NVDVVEILTKEDPDYPYSANNYGKTP  184 (227)
Q Consensus       106 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~-~~~~~~~ll~~~~~~~~~~~~~~~t~  184 (227)
                      .++.+++-+||++|++++.                  ......||||.|+... ....+++|+......+...+..+.||
T Consensus       140 WnN~~va~~LLqhgaDVnA------------------~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta  201 (228)
T KOG0512|consen  140 WNNFEVAGRLLQHGADVNA------------------QTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETA  201 (228)
T ss_pred             ccchhHHHHHHhccCcccc------------------cccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchH
Confidence            5555555555555555443                  3444455555555432 22344444433222234445555555


Q ss_pred             HHHHHH
Q 037129          185 LYMAAE  190 (227)
Q Consensus       185 l~~A~~  190 (227)
                      +.+|-+
T Consensus       202 ~~iARR  207 (228)
T KOG0512|consen  202 FDIARR  207 (228)
T ss_pred             HHHHHH
Confidence            555543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.84  E-value=1.8e-20  Score=124.83  Aligned_cols=141  Identities=24%  Similarity=0.202  Sum_probs=121.6

Q ss_pred             chhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHH
Q 037129           59 TILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQ  138 (227)
Q Consensus        59 t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  138 (227)
                      -.+.+|  +..+....|+.|++.   ....+|.+|.+|+||||.|+..|+.+|++.|+..|++...              
T Consensus        65 rl~lwa--ae~nrl~eV~~lL~e---~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a--------------  125 (228)
T KOG0512|consen   65 RLLLWA--AEKNRLTEVQRLLSE---KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEA--------------  125 (228)
T ss_pred             HHHHHH--HhhccHHHHHHHHHh---ccccccccccccccHHHHHHhcCchHHHHHHHHccCCccc--------------
Confidence            345577  888888888888874   3556999999999999999999999999999999999765              


Q ss_pred             HHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHH-HHHHHH-hcCCCCcccCCCCCC
Q 037129          139 IIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSN-MVLALL-ENRTSVSHEGPNGKT  216 (227)
Q Consensus       139 ~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~-~v~~Ll-~~g~~~~~~~~~g~t  216 (227)
                          +...|+||||.||...+.+++-.|+++|++++ .......||||.|+...+.. .+++|+ +.+.++..++..+.|
T Consensus       126 ----~T~~GWTPLhSAckWnN~~va~~LLqhgaDVn-A~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eet  200 (228)
T KOG0512|consen  126 ----KTNEGWTPLHSACKWNNFEVAGRLLQHGADVN-AQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEET  200 (228)
T ss_pred             ----ccccCccchhhhhcccchhHHHHHHhccCccc-ccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccch
Confidence                78999999999999999999999999999976 77778899999999776654 455555 578999999999999


Q ss_pred             HHHHHHH
Q 037129          217 ALHAAAM  223 (227)
Q Consensus       217 ~l~~a~~  223 (227)
                      |+.+|-.
T Consensus       201 a~~iARR  207 (228)
T KOG0512|consen  201 AFDIARR  207 (228)
T ss_pred             HHHHHHH
Confidence            9998854

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=1.8e-20  Score=138.43  Aligned_cols=162  Identities=15%  Similarity=0.152  Sum_probs=133.4

Q ss_pred             ccCCHHHHHHHhcCCchHHHhhHhhhh-ccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccc-cCCCCCH
Q 037129           22 QQMDPIFFNAAAAGNSEPFKDMAGEEI-KSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQV-NAKDDTP   99 (227)
Q Consensus        22 ~~~~~~l~~a~~~g~~~~v~~ll~~~~-~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~tp   99 (227)
                      ..++++||+++..+++++|+.||+.|+ +++..++.|+||++++..++....+-+....+.+.  -.++|.+ ...|+|+
T Consensus       266 sNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~--mgnVNaKAsQ~gQTA  343 (452)
T KOG0514|consen  266 SNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFK--MGDVNAKASQHGQTA  343 (452)
T ss_pred             CCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHh--ccCcchhhhhhcchh
Confidence            446778999999999999999999553 33477788999999986666666555555554432  2245544 4679999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCccccc
Q 037129          100 LHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANN  179 (227)
Q Consensus       100 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~  179 (227)
                      |++|+..|..++|+.||..|++++.                  +|.+|.|+|++|+..|+.++++.|+..-.......|.
T Consensus       344 LMLAVSHGr~d~vk~LLacgAdVNi------------------QDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~  405 (452)
T KOG0514|consen  344 LMLAVSHGRVDMVKALLACGADVNI------------------QDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDV  405 (452)
T ss_pred             hhhhhhcCcHHHHHHHHHccCCCcc------------------ccCCccHHHhhhhhhChHHHHHHHhccCcccceeecC
Confidence            9999999999999999999999765                  8999999999999999999999999764444568899


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhc
Q 037129          180 YGKTPLYMAAESRSSNMVLALLEN  203 (227)
Q Consensus       180 ~~~t~l~~A~~~~~~~~v~~Ll~~  203 (227)
                      +|.|+|.+|...|+.++.-+|..+
T Consensus       406 DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  406 DGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             CCchhhhhHHhcCchHHHHHHHHH
Confidence            999999999999999998877643

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.82  E-value=7e-20  Score=131.73  Aligned_cols=152  Identities=24%  Similarity=0.219  Sum_probs=117.1

Q ss_pred             HhcCCchHHHhhHh-hhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHH
Q 037129           32 AAAGNSEPFKDMAG-EEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSD  110 (227)
Q Consensus        32 ~~~g~~~~v~~ll~-~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~  110 (227)
                      |+.|+.-.|...++ ..-|.|.-|..|.+|||+|  ++.|+..+++.|+..    +..+|..+....||||+|+..|+.+
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwa--akegh~aivemll~r----garvn~tnmgddtplhlaaahghrd   81 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWA--AKEGHVAIVEMLLSR----GARVNSTNMGDDTPLHLAAAHGHRD   81 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhh--hhcccHHHHHHHHhc----ccccccccCCCCcchhhhhhcccHH
Confidence            55565555555555 6677777787889999999  999998888888886    6678888888889999999999999


Q ss_pred             HHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHH
Q 037129          111 IVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAE  190 (227)
Q Consensus       111 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~  190 (227)
                      +|+.|++..++.+.                  .+..|.|||||||..|..++.+-|+..|+.+. ..+..|.|||..|--
T Consensus        82 ivqkll~~kadvna------------------vnehgntplhyacfwgydqiaedli~~ga~v~-icnk~g~tpldkakp  142 (448)
T KOG0195|consen   82 IVQKLLSRKADVNA------------------VNEHGNTPLHYACFWGYDQIAEDLISCGAAVN-ICNKKGMTPLDKAKP  142 (448)
T ss_pred             HHHHHHHHhcccch------------------hhccCCCchhhhhhhcHHHHHHHHHhccceee-ecccCCCCchhhhch
Confidence            99999988888665                  67888899999999999889999998888754 778889999888744


Q ss_pred             cCcHHHHHHHHhcCCCCc
Q 037129          191 SRSSNMVLALLENRTSVS  208 (227)
Q Consensus       191 ~~~~~~v~~Ll~~g~~~~  208 (227)
                      .-...+.+..-++|-+++
T Consensus       143 ~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  143 MLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             HHHHHHHHHHHHhCCCCC
Confidence            333333334445666655

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.81  E-value=5.5e-19  Score=110.49  Aligned_cols=89  Identities=36%  Similarity=0.499  Sum_probs=79.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCccccc
Q 037129          100 LHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANN  179 (227)
Q Consensus       100 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~  179 (227)
                      ||+|++.|+.+++++|++.+...                     +. |.||||+|+..|+.+++++|++.|+++. .++.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~---------------------~~-~~~~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~   57 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI---------------------NL-GNTALHYAAENGNLEIVKLLLENGADIN-SQDK   57 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT---------------------TS-SSBHHHHHHHTTTHHHHHHHHHTTTCTT--BST
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC---------------------CC-CCCHHHHHHHcCCHHHHHHHHHhccccc-ccCC
Confidence            79999999999999999987653                     22 8899999999999999999999999854 7889


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCCcccC
Q 037129          180 YGKTPLYMAAESRSSNMVLALLENRTSVSHEG  211 (227)
Q Consensus       180 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~  211 (227)
                      .|.||||+|+..++.+++++|+++|++++.+|
T Consensus        58 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   58 NGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             TSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            99999999999999999999999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=2.1e-19  Score=129.29  Aligned_cols=115  Identities=31%  Similarity=0.345  Sum_probs=72.2

Q ss_pred             ccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHH
Q 037129           88 LLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILT  167 (227)
Q Consensus        88 ~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll  167 (227)
                      ++|.-|..|.+||||||+.|+..+++.|+..|+..+.                  .+....||||+|+..|+.++|..|+
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~rgarvn~------------------tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNS------------------TNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhccccccc------------------ccCCCCcchhhhhhcccHHHHHHHH
Confidence            3455566666666666666666666666666665443                  4455556666666666666666666


Q ss_pred             hcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHH
Q 037129          168 KEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAA  221 (227)
Q Consensus       168 ~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a  221 (227)
                      +..++++ ..+.-|+||||+||.-|+-.+.+-|+..|+.+++.+++|.|||..|
T Consensus        88 ~~kadvn-avnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   88 SRKADVN-AVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             HHhcccc-hhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            6666643 5566666666666666666666666666666666666666666544

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.79  E-value=1.4e-18  Score=140.41  Aligned_cols=195  Identities=19%  Similarity=0.167  Sum_probs=151.5

Q ss_pred             HHHHHHHhcCCchHHHhhHhhh---------hccccccCCCCchhhhhhh-hcccccccHHHHHHHHHhCCcccccc---
Q 037129           26 PIFFNAAAAGNSEPFKDMAGEE---------IKSLLTAKTENTILHINII-SQERENVSTKFVAEILEKCPLLLLQV---   92 (227)
Q Consensus        26 ~~l~~a~~~g~~~~v~~ll~~~---------~~~~~~~~~g~t~L~~a~~-~~~~~~~~~~~l~~~~~~~~~~~~~~---   92 (227)
                      .++..|...+.++....+++.+         .+.+.+...|.|+||.|.. ...++.++++.|++...   ..+|..   
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p---~lind~~~~  179 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFP---KLINDIYTS  179 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhH---HHhhhhhhh
Confidence            5688888889988888888633         3444556689999999833 23455678888888753   444432   


Q ss_pred             -cCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHH-------HHHhccCCCCcHHHHHHhcCCHHHHH
Q 037129           93 -NAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQ-------IIRMTNKEKNTALHEAVCHQNVDVVE  164 (227)
Q Consensus        93 -~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~t~l~~A~~~~~~~~~~  164 (227)
                       ...|.||||.|+.+.+.++|++|++.|++++.+-.-  ..+....+       -....-..|..||-+|+..++.++++
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G--~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivr  257 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACG--AFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVR  257 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhc--cccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHH
Confidence             346999999999999999999999999998763221  10000000       00001245789999999999999999


Q ss_pred             HHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCC--CcccCCCCCCHHHHHHHhcC
Q 037129          165 ILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTS--VSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       165 ~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~l~~a~~~~~  226 (227)
                      +|+++|+| ++.+|+.|+|.||..+.+-..++.++++++|++  ....+..|.|||-+|++-|.
T Consensus       258 lLl~~gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk  320 (782)
T KOG3676|consen  258 LLLAHGAD-PNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGK  320 (782)
T ss_pred             HHHhcCCC-CCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhh
Confidence            99999999 559999999999999999999999999999999  99999999999999998764

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.78  E-value=1.3e-18  Score=134.53  Aligned_cols=149  Identities=21%  Similarity=0.176  Sum_probs=132.0

Q ss_pred             ccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhC----------------
Q 037129           22 QQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKC----------------   85 (227)
Q Consensus        22 ~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~----------------   85 (227)
                      ..+.++||.||...+.++|++|++.|.+++..|..|+||||.|  +..|+..+++++++++++.                
T Consensus        71 ~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaa--ascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~  148 (527)
T KOG0505|consen   71 VDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAA--ASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAED  148 (527)
T ss_pred             CccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhh--cccccHHHHHHHHHhhhhhhhccCCCCCccccccC
Confidence            4556789999999999999999999999999999999999999  9999999999999986443                


Q ss_pred             ---------------------------------------CcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccc
Q 037129           86 ---------------------------------------PLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHEN  126 (227)
Q Consensus        86 ---------------------------------------~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~  126 (227)
                                                             +...+..+..|-|.||.|+..|..++.++|++.|.....  
T Consensus       149 ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~--  226 (527)
T KOG0505|consen  149 EATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNI--  226 (527)
T ss_pred             cchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccc--
Confidence                                                   333344445689999999999999999999999998664  


Q ss_pred             hhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHc
Q 037129          127 EELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAES  191 (227)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~  191 (227)
                                      +|.+|+||||.|+.+|..++++.|+++|+++. .....|.+|+.+|...
T Consensus       227 ----------------~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d-~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  227 ----------------KDYDGWTPLHAAAHWGQEDACELLVEHGADMD-AKTKMGETPLDVADEE  274 (527)
T ss_pred             ----------------ccccCCCcccHHHHhhhHhHHHHHHHhhcccc-hhhhcCCCCccchhhh
Confidence                            89999999999999999999999999999954 7888999999988653

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.77  E-value=1.9e-17  Score=110.01  Aligned_cols=113  Identities=30%  Similarity=0.492  Sum_probs=62.5

Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 037129           93 NAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD  172 (227)
Q Consensus        93 ~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~  172 (227)
                      +..|.||||.|+..++.+++++|++.+.....                  .+..|.+|++.|+..+..+++++|++.++.
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~------------------~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~   65 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNA------------------KDNDGRTPLHLAAKNGHLEIVKLLLEKGAD   65 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCc------------------cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            34455556665555555555555555544321                  345555566655555555555555555543


Q ss_pred             CCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHh
Q 037129          173 YPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMR  224 (227)
Q Consensus       173 ~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~  224 (227)
                      . +..+..+.||+|.|+..++.+++++|+++|.+++..+..|.||+++|...
T Consensus        66 ~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~  116 (126)
T cd00204          66 V-NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN  116 (126)
T ss_pred             c-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence            2 23445555566666555555566666555555555555555666555544

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.76  E-value=2.1e-18  Score=107.82  Aligned_cols=87  Identities=26%  Similarity=0.258  Sum_probs=78.1

Q ss_pred             HHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcC
Q 037129           28 FFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFG  107 (227)
Q Consensus        28 l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~  107 (227)
                      ||.|+..|+++++++|++.+.+++.    |.||||+|  +..|+.+++++|++.    +.+++.++..|+||||+|+..|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A--~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~   70 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYA--AENGNLEIVKLLLEN----GADINSQDKNGNTALHYAAENG   70 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHH--HHTTTHHHHHHHHHT----TTCTT-BSTTSSBHHHHHHHTT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHH--HHcCCHHHHHHHHHh----cccccccCCCCCCHHHHHHHcC
Confidence            7899999999999999998877544    88999999  999999999999996    7788899999999999999999


Q ss_pred             CHHHHHHHHHhhhcccc
Q 037129          108 HSDIVRFLVERAKLTQH  124 (227)
Q Consensus       108 ~~~~v~~Ll~~~~~~~~  124 (227)
                      +.+++++|+++|...+.
T Consensus        71 ~~~~~~~Ll~~g~~~~~   87 (89)
T PF12796_consen   71 NLEIVKLLLEHGADVNI   87 (89)
T ss_dssp             HHHHHHHHHHTTT-TTS
T ss_pred             CHHHHHHHHHcCCCCCC
Confidence            99999999999987654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.76  E-value=2.2e-17  Score=109.67  Aligned_cols=124  Identities=32%  Similarity=0.426  Sum_probs=100.9

Q ss_pred             ccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhh
Q 037129           53 TAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESR  132 (227)
Q Consensus        53 ~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  132 (227)
                      .+..|.||||+|  +..++.+++++|++.    +...+..+..|.+|+|.|+..+..+++++|++.+...+.        
T Consensus         3 ~~~~g~t~l~~a--~~~~~~~~i~~li~~----~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~--------   68 (126)
T cd00204           3 RDEDGRTPLHLA--ASNGHLEVVKLLLEN----GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA--------   68 (126)
T ss_pred             cCcCCCCHHHHH--HHcCcHHHHHHHHHc----CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc--------
Confidence            446788999999  888888888888876    444466788888999999999999999999998864432        


Q ss_pred             HHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHH
Q 037129          133 VGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL  201 (227)
Q Consensus       133 ~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll  201 (227)
                                .+..+.||+|+|+..++.+++++|++.+.+.. ..+..+.||++.|...++.+++++|+
T Consensus        69 ----------~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          69 ----------RDKDGNTPLHLAARNGNLDVVKLLLKHGADVN-ARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             ----------cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence                      56778899999999999999999998876643 56778889999999999998888874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.73  E-value=4.9e-18  Score=141.09  Aligned_cols=203  Identities=19%  Similarity=0.151  Sum_probs=165.5

Q ss_pred             hhhhccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccc-cccCCC
Q 037129           18 REIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLL-QVNAKD   96 (227)
Q Consensus        18 ~~~~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~g   96 (227)
                      ...+....++|..||..|+.|.|..|+.+|.++..+|+.|++||.+|  +..|+..+|+.|++.-    ..++ ..|..+
T Consensus       751 ~~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plIma--atagh~tvV~~llk~h----a~veaQsdrtk  824 (2131)
T KOG4369|consen  751 PLTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMA--ATAGHITVVQDLLKAH----ADVEAQSDRTK  824 (2131)
T ss_pred             cccCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhh--cccCchHHHHHHHhhh----hhhhhhccccc
Confidence            34455677789999999999999999999999999999999999999  9999999999999873    3343 356778


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHH-----HHHH------------HhccCCCCcHHHHHHhcCC
Q 037129           97 DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAA-----WQII------------RMTNKEKNTALHEAVCHQN  159 (227)
Q Consensus        97 ~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~-----~~~~------------~~~~~~~~t~l~~A~~~~~  159 (227)
                      .|+|.+||..|..++|++||..|++-..++.....++...     ..++            +.-.+-|..||.+|..+|+
T Consensus       825 dt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh  904 (2131)
T KOG4369|consen  825 DTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGH  904 (2131)
T ss_pred             CceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccc
Confidence            8999999999999999999999887765544433332211     1111            1123457889999999999


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          160 VDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       160 ~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ...+..|++.|.+++....-+.+|.|.+|+..|+.+++.+|+...+.+..+.+.|.|||.-++.-||
T Consensus       905 ~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGy  971 (2131)
T KOG4369|consen  905 QAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGY  971 (2131)
T ss_pred             cHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCc
Confidence            9999999999998877777778899999999999999999999999999999999999999998887

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.71  E-value=6.9e-17  Score=96.49  Aligned_cols=104  Identities=23%  Similarity=0.268  Sum_probs=93.4

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCccc
Q 037129           98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSA  177 (227)
Q Consensus        98 tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~  177 (227)
                      ..+.|+++.|..+-|+-.+..|.+.+.                   ...|++|||+|+..|+.+++++|+..|+++. .+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~-------------------~~ggR~plhyAAD~GQl~ilefli~iGA~i~-~k   63 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNE-------------------IYGGRTPLHYAADYGQLSILEFLISIGANIQ-DK   63 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHH-------------------HhCCcccchHhhhcchHHHHHHHHHhccccC-Cc
Confidence            457889999999999999998866542                   4689999999999999999999999999965 89


Q ss_pred             ccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHH
Q 037129          178 NNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAA  221 (227)
Q Consensus       178 ~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a  221 (227)
                      |..|-|||.-|++.|+..+|++|+++|++-.....+|.+.+..+
T Consensus        64 DKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   64 DKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             cccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            99999999999999999999999999999999999998877643

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.65  E-value=7e-16  Score=92.23  Aligned_cols=92  Identities=18%  Similarity=0.123  Sum_probs=83.6

Q ss_pred             HHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHH
Q 037129           26 PIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAK  105 (227)
Q Consensus        26 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~  105 (227)
                      ..+.+++.+|.++.|+..+..|.+++..- .|.+|||+|  +-.|+.+++++|+..    +.+++.+|+.|-|||..|+.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyA--AD~GQl~ilefli~i----GA~i~~kDKygITPLLsAvw   76 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYA--ADYGQLSILEFLISI----GANIQDKDKYGITPLLSAVW   76 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHh--hhcchHHHHHHHHHh----ccccCCccccCCcHHHHHHH
Confidence            34788999999999999999888866443 889999999  999999999999997    78899999999999999999


Q ss_pred             cCCHHHHHHHHHhhhcccc
Q 037129          106 FGHSDIVRFLVERAKLTQH  124 (227)
Q Consensus       106 ~~~~~~v~~Ll~~~~~~~~  124 (227)
                      .||.++|++||+.|+....
T Consensus        77 EGH~~cVklLL~~GAdrt~   95 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGADRTI   95 (117)
T ss_pred             HhhHHHHHHHHHcCcccce
Confidence            9999999999999998654

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.64  E-value=1.7e-15  Score=122.87  Aligned_cols=158  Identities=20%  Similarity=0.185  Sum_probs=131.4

Q ss_pred             ccCCHHHHHHHhcC---CchHHHhhHhhhhc----cc-cccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccc-
Q 037129           22 QQMDPIFFNAAAAG---NSEPFKDMAGEEIK----SL-LTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQV-   92 (227)
Q Consensus        22 ~~~~~~l~~a~~~g---~~~~v~~ll~~~~~----~~-~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~-   92 (227)
                      ..+.+.||.|..+.   +.+++..|++.-..    +. ...+.|.||||+|  +.+.+.+.|+.|++.    +++|+.+ 
T Consensus       141 a~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiA--Iv~~~~~~V~lLl~~----gADV~aRa  214 (782)
T KOG3676|consen  141 ATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIA--IVNRDAELVRLLLAA----GADVHARA  214 (782)
T ss_pred             chhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHH--HHhccHHHHHHHHHc----CCchhhHh
Confidence            44677899988743   45788888873222    11 2235799999999  999999999999997    4444422 


Q ss_pred             ----------------------cCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcH
Q 037129           93 ----------------------NAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTA  150 (227)
Q Consensus        93 ----------------------~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  150 (227)
                                            -..|..||-+||=.++.+++++|+++|++++.                  +|..|+|.
T Consensus       215 ~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~a------------------qDS~GNTV  276 (782)
T KOG3676|consen  215 CGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNA------------------QDSNGNTV  276 (782)
T ss_pred             hccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCc------------------cccCCChH
Confidence                                  12578999999999999999999999999876                  89999999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCC-CCcccccCCCCHHHHHHHcCcHHHHHHHHhc
Q 037129          151 LHEAVCHQNVDVVEILTKEDPD-YPYSANNYGKTPLYMAAESRSSNMVLALLEN  203 (227)
Q Consensus       151 l~~A~~~~~~~~~~~ll~~~~~-~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  203 (227)
                      ||..+..-..++.+.+++.|+. .....+..|.|||..|+..|..++.+.+++.
T Consensus       277 LH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  277 LHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999889999999999887 2348899999999999999999999999988

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.61  E-value=1.2e-14  Score=106.57  Aligned_cols=116  Identities=28%  Similarity=0.374  Sum_probs=74.2

Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCC-----HHHHHHH
Q 037129           92 VNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQN-----VDVVEIL  166 (227)
Q Consensus        92 ~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~-----~~~~~~l  166 (227)
                      .+..+.++++.++..+..+++++++..|..++.                  ++..|.|++|+|+..++     .++++.|
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------~~~~g~t~l~~a~~~~~~~~~~~~~~~~l  130 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNA------------------KDADGDTPLHLAALNGNPPEGNIEVAKLL  130 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCccc------------------ccCCCCcHHHHHHhcCCcccchHHHHHHH
Confidence            344456666666666666666666666666533                  56666666666666666     6666666


Q ss_pred             HhcCC--CCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhc
Q 037129          167 TKEDP--DYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRS  225 (227)
Q Consensus       167 l~~~~--~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  225 (227)
                      ++.|+  +.....+..|.||||+|+..++.++++.|++.|++++..+..|.|+++.|+..+
T Consensus       131 l~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~  191 (235)
T COG0666         131 LEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNG  191 (235)
T ss_pred             HHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccc
Confidence            66666  445455666666666666666666666666666666666666666666666554

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.59  E-value=1.5e-15  Score=126.66  Aligned_cols=200  Identities=21%  Similarity=0.162  Sum_probs=134.7

Q ss_pred             hhccCCHHHHHHHhcCCchHHHhhHhhhhccc-cccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCC
Q 037129           20 IKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSL-LTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDT   98 (227)
Q Consensus        20 ~~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   98 (227)
                      |+.++. +|.+|+..|+..+|+.|++..+++. -.|+.+.|+|.+|  |..|..+++++|+..+.+.    ..++...+|
T Consensus       787 dkkgf~-plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSla--csggr~~vvelLl~~gank----ehrnvsDyt  859 (2131)
T KOG4369|consen  787 DKKGFV-PLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLA--CSGGRTRVVELLLNAGANK----EHRNVSDYT  859 (2131)
T ss_pred             ccccch-hhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEe--cCCCcchHHHHHHHhhccc----cccchhhcC
Confidence            344444 5888999999999999999777766 6777889999999  9999999999999886543    245666777


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcccccch--hhhhhHHHH----------------------------------------
Q 037129           99 PLHVAAKFGHSDIVRFLVERAKLTQHENE--ELESRVGAA----------------------------------------  136 (227)
Q Consensus        99 pl~~A~~~~~~~~v~~Ll~~~~~~~~~~~--~~~~~~~~~----------------------------------------  136 (227)
                      ||.+|...|..+++..|+..|..++.+..  ....+++..                                        
T Consensus       860 Plsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~  939 (2131)
T KOG4369|consen  860 PLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRP  939 (2131)
T ss_pred             chhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcc
Confidence            77777777777777777777755543221  111111111                                        


Q ss_pred             ---------HHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcc-cccCCCCHHHHHHHcCcHHHHHHHHhcCCC
Q 037129          137 ---------WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS-ANNYGKTPLYMAAESRSSNMVLALLENRTS  206 (227)
Q Consensus       137 ---------~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~-~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  206 (227)
                               ...+..+.+.|-|||+-++..|.+++-..|+..|+|.+.. ......|.|.+++..|+...++.|+...+.
T Consensus       940 evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at 1019 (2131)
T KOG4369|consen  940 EVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT 1019 (2131)
T ss_pred             hHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccc
Confidence                     1112445567778888888888888888888887775311 112233556666666666666666666666


Q ss_pred             CcccCCCCCCHHHHHHHhcC
Q 037129          207 VSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       207 ~~~~~~~g~t~l~~a~~~~~  226 (227)
                      +...+++|.|+|++|+.-||
T Consensus      1020 v~v~NkkG~T~Lwla~~Gg~ 1039 (2131)
T KOG4369|consen 1020 VRVPNKKGCTVLWLASAGGA 1039 (2131)
T ss_pred             eecccCCCCcccchhccCCc
Confidence            66667777777777766554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.58  E-value=3.1e-15  Score=84.40  Aligned_cols=56  Identities=34%  Similarity=0.468  Sum_probs=33.2

Q ss_pred             HHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHH
Q 037129          166 LTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAA  221 (227)
Q Consensus       166 ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a  221 (227)
                      |++.++...+..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45667444668999999999999999999999999999999999999999999987

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.56  E-value=4.3e-14  Score=103.57  Aligned_cols=129  Identities=27%  Similarity=0.354  Sum_probs=114.5

Q ss_pred             cccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCC-----HHHHHHHHHhhh--cccc
Q 037129           52 LTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGH-----SDIVRFLVERAK--LTQH  124 (227)
Q Consensus        52 ~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~-----~~~v~~Ll~~~~--~~~~  124 (227)
                      ..+..+.++++.+  +..+..+++++++..    +..++.++..|.||||+|+..++     .+++++|++.|+  ....
T Consensus        68 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~----~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~  141 (235)
T COG0666          68 ARDLDGRLPLHSA--ASKGDDKIVKLLLAS----GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNN  141 (235)
T ss_pred             cCCccccCHHHHH--HHcCcHHHHHHHHHc----CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcc
Confidence            4445688999999  999999999777775    67778999999999999999999     999999999999  3322


Q ss_pred             cchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcC
Q 037129          125 ENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENR  204 (227)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  204 (227)
                                       .++..|.||||+|+..|+.++++.+++.+++.. ..+..|.|+++.|+..++.++++.++..+
T Consensus       142 -----------------~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         142 -----------------LRDEDGNTPLHWAALNGDADIVELLLEAGADPN-SRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             -----------------ccCCCCCchhHHHHHcCchHHHHHHHhcCCCCc-ccccCCCcchhhhcccchHHHHHHHHhcC
Confidence                             368999999999999999999999999999954 77899999999999999999999999965

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.54  E-value=7e-14  Score=116.93  Aligned_cols=105  Identities=24%  Similarity=0.234  Sum_probs=95.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccc
Q 037129           99 PLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSAN  178 (227)
Q Consensus        99 pl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~  178 (227)
                      .|+.|+..|+.+++++|++.|++.+.                  ++..|.||||+|+..|+.+++++|++.|+++ +..+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~------------------~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d  145 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNC------------------RDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLD  145 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCC------------------cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCC
Confidence            58899999999999999999988664                  7889999999999999999999999999995 4889


Q ss_pred             cCCCCHHHHHHHcCcHHHHHHHHhc-------CCCCcccCCCCCCHHHHHH
Q 037129          179 NYGKTPLYMAAESRSSNMVLALLEN-------RTSVSHEGPNGKTALHAAA  222 (227)
Q Consensus       179 ~~~~t~l~~A~~~~~~~~v~~Ll~~-------g~~~~~~~~~g~t~l~~a~  222 (227)
                      ..|.||||+|+..++.+++++|+++       |++++..+..|.+|+..+.
T Consensus       146 ~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        146 KDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999999999999999999999999       8999888888887766443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.49  E-value=1e-13  Score=77.74  Aligned_cols=54  Identities=35%  Similarity=0.533  Sum_probs=44.8

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHH
Q 037129           96 DDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILT  167 (227)
Q Consensus        96 g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll  167 (227)
                      |+||||+|++.|+.+++++|++.|.+.+.                  ++.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~------------------~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINA------------------QDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-------------------B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCC------------------CCCCCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999999999999999988654                  7899999999999999999999985

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=6.1e-14  Score=108.85  Aligned_cols=120  Identities=19%  Similarity=0.145  Sum_probs=97.6

Q ss_pred             HHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHH
Q 037129           26 PIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAK  105 (227)
Q Consensus        26 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~  105 (227)
                      ..|..|+..|.++.|+..+..=-|+...+..|-|+||-|  +-.|+.+||++|++.    +.+||..|.+||||||+|+.
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNA--iCaghyeIVkFLi~~----ganVNa~DSdGWTPLHCAAS  625 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNA--ICAGHYEIVKFLIEF----GANVNAADSDGWTPLHCAAS  625 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhh--hhcchhHHHHHHHhc----CCcccCccCCCCchhhhhhh
Confidence            357789999999999999985555556677999999999  999999999999997    88999999999999999999


Q ss_pred             cCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHH--hcCCHHHHHHHHh
Q 037129          106 FGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAV--CHQNVDVVEILTK  168 (227)
Q Consensus       106 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~--~~~~~~~~~~ll~  168 (227)
                      .++..+++.|++.|+.+-..                 .-.++.|+..-+-  .-|..+|.+||..
T Consensus       626 CNnv~~ckqLVe~GaavfAs-----------------TlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  626 CNNVPMCKQLVESGAAVFAS-----------------TLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             cCchHHHHHHHhccceEEee-----------------ecccccchhhhcchhhhhHHHHHHHHHH
Confidence            99999999999999876431                 3344555544432  2366667777653

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=1.3e-13  Score=107.08  Aligned_cols=116  Identities=22%  Similarity=0.109  Sum_probs=100.3

Q ss_pred             hhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHh
Q 037129           63 INIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRM  142 (227)
Q Consensus        63 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (227)
                      -|  +..|.+|.|..++..+.    +....+..|-|+||.|+-.||.+||+||+++|++++.                  
T Consensus       556 Da--aLeGEldlVq~~i~ev~----DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa------------------  611 (752)
T KOG0515|consen  556 DA--ALEGELDLVQRIIYEVT----DPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNA------------------  611 (752)
T ss_pred             hh--hhcchHHHHHHHHHhhc----CCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccC------------------
Confidence            46  78899999998887643    3445688899999999999999999999999999776                  


Q ss_pred             ccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHH--HHcCcHHHHHHHHh
Q 037129          143 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMA--AESRSSNMVLALLE  202 (227)
Q Consensus       143 ~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A--~~~~~~~~v~~Ll~  202 (227)
                      .|.+||||||+|+.++++.+++.|++.|+.+....-+++.|+...+  ...|+..|.++|..
T Consensus       612 ~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  612 ADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             ccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            8999999999999999999999999999988766677889998876  46688899999864

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.48  E-value=1.8e-13  Score=76.76  Aligned_cols=54  Identities=31%  Similarity=0.447  Sum_probs=42.3

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHH
Q 037129          147 KNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL  201 (227)
Q Consensus       147 ~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll  201 (227)
                      |.||||+|+..|+.+++++|++.|.++. .+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din-~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADIN-AQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT--B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            5789999999999999999999988855 66889999999999999999999886

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.47  E-value=1.4e-13  Score=115.13  Aligned_cols=88  Identities=17%  Similarity=0.177  Sum_probs=83.2

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAA  104 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~  104 (227)
                      ...|+.|+..|+.+.++.|++.|.+++..|..|.||||+|  +..|+.+++++|++.    +.+++.+|..|.||||+|+
T Consensus        83 ~~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~A--a~~g~~eiv~~LL~~----Gadvn~~d~~G~TpLh~A~  156 (664)
T PTZ00322         83 TVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIA--CANGHVQVVRVLLEF----GADPTLLDKDGKTPLELAE  156 (664)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH--HHCCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHH
Confidence            3458899999999999999999999999999999999999  999999999999986    7788999999999999999


Q ss_pred             HcCCHHHHHHHHHh
Q 037129          105 KFGHSDIVRFLVER  118 (227)
Q Consensus       105 ~~~~~~~v~~Ll~~  118 (227)
                      ..|+.+++++|+++
T Consensus       157 ~~g~~~iv~~Ll~~  170 (664)
T PTZ00322        157 ENGFREVVQLLSRH  170 (664)
T ss_pred             HCCcHHHHHHHHhC
Confidence            99999999999998

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.44  E-value=8.6e-13  Score=95.39  Aligned_cols=122  Identities=16%  Similarity=0.130  Sum_probs=105.4

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccc-cccCCCCCHHH
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLL-QVNAKDDTPLH  101 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~g~tpl~  101 (227)
                      ....+|..++..|+.+....|++.--+++..|.+|.|+|..|  +..|+.+.++.+++.    +.++| .++..++||||
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahA--aykGnl~~v~lll~~----gaDvN~~qhg~~YTpLm   84 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHA--AYKGNLTLVELLLEL----GADVNDKQHGTLYTPLM   84 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHH--HhcCcHHHHHHHHHh----CCCcCcccccccccHHH
Confidence            345679999999999999999985334558999999999999  999999999999998    66666 35677899999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHh
Q 037129          102 VAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK  168 (227)
Q Consensus       102 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~  168 (227)
                      +|+.+|+.++.++|++.|+....                  .+..|+|+-..|+.-|+-++|..+-.
T Consensus        85 FAALSGn~dvcrllldaGa~~~~------------------vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   85 FAALSGNQDVCRLLLDAGARMYL------------------VNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             HHHHcCCchHHHHHHhccCcccc------------------ccchhhhHHHHHHHhcchHHHHHHhc
Confidence            99999999999999999988654                  67889999999999999888877643

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.44  E-value=1.5e-12  Score=94.11  Aligned_cols=112  Identities=21%  Similarity=0.226  Sum_probs=100.4

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcc
Q 037129           97 DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS  176 (227)
Q Consensus        97 ~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~  176 (227)
                      ..||.-++..+..+-+.-||.....                  ++..|..|.++|..|+..|+.++++.|++.|+|++..
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~------------------vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~   74 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQ------------------VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDK   74 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhh------------------hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcc
Confidence            4678888888888888777776433                  3458999999999999999999999999999999888


Q ss_pred             cccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          177 ANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       177 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      +..-+.||||+|+..|+.++.++|++.|+.+...+.-|+|+-..|+.-|+
T Consensus        75 qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~  124 (396)
T KOG1710|consen   75 QHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGH  124 (396)
T ss_pred             cccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcc
Confidence            88889999999999999999999999999999999999999999998775

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.37  E-value=2.3e-13  Score=76.73  Aligned_cols=55  Identities=18%  Similarity=0.117  Sum_probs=29.4

Q ss_pred             hHhhh-hccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           43 MAGEE-IKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        43 ll~~~-~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      |++.| .+++..|..|+||||+|  +..|+.+++++|++.    +.+++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A--~~~g~~~~v~~Ll~~----g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWA--ARYGHSEVVRLLLQN----GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHH--HHHT-HHHHHHHHHC----T--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHH--HHcCcHHHHHHHHHC----cCCCCCCcCCCCCHHHhC
Confidence            45656 77778888899999999  889999999998854    778888899999999886

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.14  E-value=4.6e-11  Score=97.81  Aligned_cols=84  Identities=20%  Similarity=0.168  Sum_probs=78.7

Q ss_pred             HHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHH
Q 037129          140 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALH  219 (227)
Q Consensus       140 ~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~  219 (227)
                      .+++|..|+|+||+|+..+..++++||+++|.++....-..|.||||-|+.+|+.+++-.|+.+|+...++|++|..||+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            67799999999999999999999999999999987555568999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 037129          220 AAAM  223 (227)
Q Consensus       220 ~a~~  223 (227)
                      +.+.
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            8775

>PF13606 Ank_3: Ankyrin repeat

Probab=99.04  E-value=4.2e-10  Score=54.35  Aligned_cols=29  Identities=38%  Similarity=0.511  Sum_probs=23.9

Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCCc
Q 037129          180 YGKTPLYMAAESRSSNMVLALLENRTSVS  208 (227)
Q Consensus       180 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  208 (227)
                      .|+||||+|+..|+.+++++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            37788888888888888888888888876

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.98  E-value=2.4e-09  Score=83.19  Aligned_cols=77  Identities=19%  Similarity=0.157  Sum_probs=73.4

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          150 ALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       150 ~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      .||..++.|+.++.-.|+..|++.+......|.||||+|++.|+..-+++|+-+|+|+...|.+|+||+.+|-..||
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGH  212 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCc
Confidence            58999999999999999999999888888899999999999999999999999999999999999999999998886

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.95  E-value=1.6e-09  Score=53.87  Aligned_cols=32  Identities=28%  Similarity=0.426  Sum_probs=27.6

Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCCcccC
Q 037129          180 YGKTPLYMAAESRSSNMVLALLENRTSVSHEG  211 (227)
Q Consensus       180 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~  211 (227)
                      .|.||||+|+..++.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            47889999999999999999999999888776

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.91  E-value=1.8e-09  Score=52.15  Aligned_cols=29  Identities=38%  Similarity=0.661  Sum_probs=25.9

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhhhccc
Q 037129           95 KDDTPLHVAAKFGHSDIVRFLVERAKLTQ  123 (227)
Q Consensus        95 ~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~  123 (227)
                      +|+||||+||+.|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            48999999999999999999999987654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.89  E-value=3.2e-09  Score=82.10  Aligned_cols=92  Identities=21%  Similarity=0.204  Sum_probs=83.5

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAA  104 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~  104 (227)
                      .-.+.+|++.|++..++.+.-+|.|...+|++..|+||.|  +..|+.+++++|++..   ..+.+.+|..|+|||.-|-
T Consensus       507 ~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvA--AaEG~v~v~kfl~~~~---kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVA--AAEGHVEVVKFLLNAC---KVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             hhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheee--cccCceeHHHHHHHHH---cCCCChhhccCCCcchHhH
Confidence            3358889999999999999999999999999999999999  9999999999999964   5667789999999999999


Q ss_pred             HcCCHHHHHHHHHhhhc
Q 037129          105 KFGHSDIVRFLVERAKL  121 (227)
Q Consensus       105 ~~~~~~~v~~Ll~~~~~  121 (227)
                      .++|.+++++|-+.-..
T Consensus       582 ~F~h~~v~k~L~~~~~~  598 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQYP  598 (622)
T ss_pred             hcCcHHHHHHHHHHhcc
Confidence            99999999999887543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.87  E-value=5e-09  Score=82.89  Aligned_cols=124  Identities=15%  Similarity=0.182  Sum_probs=110.6

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      ....+..|+..+++-.++.....|.+....+.+..+.||+|  ++.|+.++|++++.+..  ++.++..++.|.|.||-|
T Consensus       866 iseeil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a--~~tg~~eivkyildh~p--~elld~~de~get~lhka  941 (1004)
T KOG0782|consen  866 ISEEILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYA--AKTGNGEIVKYILDHGP--SELLDMADETGETALHKA  941 (1004)
T ss_pred             ccHHHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHH--HhcCChHHHHHHHhcCC--HHHHHHHhhhhhHHHHHH
Confidence            34458889999999999999989999999999999999999  99999999999999743  566788899999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhc
Q 037129          104 AKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKE  169 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~  169 (227)
                      +-.++-.+..+|++.|+....                  .|..|.||-.-|-..|..+..-||-..
T Consensus       942 a~~~~r~vc~~lvdagasl~k------------------td~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  942 ACQRNRAVCQLLVDAGASLRK------------------TDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHhcchHHHHHHHhcchhhee------------------cccCCCChHHHHHhcCCchHHHHHhhh
Confidence            999999999999999988554                  788999999999999999999988644

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.81  E-value=6.5e-09  Score=80.43  Aligned_cols=93  Identities=25%  Similarity=0.263  Sum_probs=81.4

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCC
Q 037129           94 AKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDY  173 (227)
Q Consensus        94 ~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~  173 (227)
                      ..+..++.+|++.|....++-+.-.|.+..                  .+|.+.+|.||.|+.-|+.+++++|++.-...
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~------------------~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~  565 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLE------------------TKDYDDRTALHVAAAEGHVEVVKFLLNACKVD  565 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhccccc------------------ccccccchhheeecccCceeHHHHHHHHHcCC
Confidence            346678999999999999888877777744                  48999999999999999999999999876655


Q ss_pred             CcccccCCCCHHHHHHHcCcHHHHHHHHhcC
Q 037129          174 PYSANNYGKTPLYMAAESRSSNMVLALLENR  204 (227)
Q Consensus       174 ~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  204 (227)
                      +..+|+||+|||.-|...++.+++++|-+.-
T Consensus       566 ~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  566 PDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             CChhhccCCCcchHhHhcCcHHHHHHHHHHh
Confidence            7799999999999999999999999998754

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.81  E-value=1.5e-08  Score=80.34  Aligned_cols=85  Identities=22%  Similarity=0.264  Sum_probs=75.7

Q ss_pred             hccCCCCcHHHHHHhcCCHHHHHHHHhcCCC-CCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHH
Q 037129          142 MTNKEKNTALHEAVCHQNVDVVEILTKEDPD-YPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHA  220 (227)
Q Consensus       142 ~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~-~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  220 (227)
                      .++.+.++.||+|+..|+-++|+|++++|+. +....+..|.|+||.|+..++..+..+|++.|+.....|..|+||-..
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~er  973 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQER  973 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHH
Confidence            3677889999999999999999999999984 244667889999999999999999999999999999999999999988


Q ss_pred             HHHhcC
Q 037129          221 AAMRSY  226 (227)
Q Consensus       221 a~~~~~  226 (227)
                      |-+-|.
T Consensus       974 aqqa~d  979 (1004)
T KOG0782|consen  974 AQQAGD  979 (1004)
T ss_pred             HHhcCC
Confidence            876553

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.80  E-value=1.8e-08  Score=78.42  Aligned_cols=92  Identities=17%  Similarity=0.212  Sum_probs=82.1

Q ss_pred             hccCCHHHHHHHhcCCchHHHhhHhhhhcccc-ccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCH
Q 037129           21 KQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLL-TAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTP   99 (227)
Q Consensus        21 ~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~-~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tp   99 (227)
                      ....+.-||.+++.|++++--.|+..|.+.|+ ..+.|.||||.|  ++.|+..-+++|.-+    |.+++.+|..|+||
T Consensus       130 ~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvA--Ak~Gq~~Q~ElL~vY----GAD~~a~d~~GmtP  203 (669)
T KOG0818|consen  130 AKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVA--AKAGQILQAELLAVY----GADPGAQDSSGMTP  203 (669)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHH--HhccchhhhhHHhhc----cCCCCCCCCCCCcH
Confidence            34567789999999999999999999999994 445799999999  999999999888875    88899999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHh
Q 037129          100 LHVAAKFGHSDIVRFLVER  118 (227)
Q Consensus       100 l~~A~~~~~~~~v~~Ll~~  118 (227)
                      +.+|-..||-++.+-|++.
T Consensus       204 ~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  204 VDYARQGGHHELAERLVEI  222 (669)
T ss_pred             HHHHHhcCchHHHHHHHHH
Confidence            9999999999998888875

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.77  E-value=4e-08  Score=81.26  Aligned_cols=131  Identities=13%  Similarity=0.090  Sum_probs=97.0

Q ss_pred             CCHHHHHHHhcCCchHHHhhHh--h--hhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAG--E--EIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTP   99 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~--~--~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tp   99 (227)
                      ....+..|+.+|+...|+..++  .  ..++|..|.-|.++|+.|  +.+.+.+++++|++.    +       ..-..+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~ia--i~nenle~~eLLl~~----~-------~~~gdA   91 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIA--IDNENLELQELLLDT----S-------SEEGDA   91 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecc--cccccHHHHHHHhcC----c-------cccchH
Confidence            3445888999999999999998  2  356678899999999999  999999999999984    1       111468


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCc
Q 037129          100 LHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPY  175 (227)
Q Consensus       100 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~  175 (227)
                      |.+|+..|..++|+.++.+-........        ....-......+.||+.+|+..++.++++.|+++|+.++.
T Consensus        92 LL~aI~~~~v~~VE~ll~~~~~~~~~~~--------~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   92 LLLAIAVGSVPLVELLLVHFVDAPYLER--------SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchhcc--------ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            9999999999999999998544322111        0000011334567888888888888888888888777653

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.69  E-value=1.2e-08  Score=84.14  Aligned_cols=82  Identities=21%  Similarity=0.297  Sum_probs=55.3

Q ss_pred             ccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccC-CCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhh
Q 037129           51 LLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNA-KDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEEL  129 (227)
Q Consensus        51 ~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  129 (227)
                      +++|..|.|+||++  +..+..+++++|+++    |.++..+|+ .|+||||.|+.+|+.+++-.||.+|..        
T Consensus        46 nikD~~GR~alH~~--~S~~k~~~l~wLlqh----Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S--------  111 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIA--VSENKNSFLRWLLQH----GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS--------  111 (1267)
T ss_pred             hHHHhhccceeeee--eccchhHHHHHHHhc----CceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc--------
Confidence            36666777777777  777777777777765    566666654 477777777777777777777777754        


Q ss_pred             hhhHHHHHHHHHhccCCCCcHHHHHHh
Q 037129          130 ESRVGAAWQIIRMTNKEKNTALHEAVC  156 (227)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~t~l~~A~~  156 (227)
                                +.+.|++|.+||..-++
T Consensus       112 ----------L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 ----------LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             ----------eEEecccCCCHHHHHhh
Confidence                      33467777777665544

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.68  E-value=3e-08  Score=49.18  Aligned_cols=30  Identities=40%  Similarity=0.641  Sum_probs=26.7

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhhhcccc
Q 037129           95 KDDTPLHVAAKFGHSDIVRFLVERAKLTQH  124 (227)
Q Consensus        95 ~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~  124 (227)
                      +|.||||+|+..|+.+++++|+++|+.++.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            488999999999999999999999988764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.65  E-value=8.8e-08  Score=76.01  Aligned_cols=95  Identities=20%  Similarity=0.172  Sum_probs=77.3

Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCccccc
Q 037129          100 LHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANN  179 (227)
Q Consensus       100 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~  179 (227)
                      |..|........+-+||.+|......              ....+.+|+|+||+|++.|++.+.++|+.+|.|.. .+|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~--------------~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~-~rda  692 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVN--------------ETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM-ARDA  692 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhh--------------ccccCCCCcchhhhhhhhcchhHHHHHHHhCccce-eccc
Confidence            34466666677777888887654321              12346678999999999999999999999999965 8899


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCCcc
Q 037129          180 YGKTPLYMAAESRSSNMVLALLENRTSVSH  209 (227)
Q Consensus       180 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~  209 (227)
                      .|+|+|.+|-+.|.-+++..|+++|+-...
T Consensus       693 ~g~t~l~yar~a~sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  693 HGRTALFYARQAGSQECIDVLLQYGCPDEC  722 (749)
T ss_pred             CCchhhhhHhhcccHHHHHHHHHcCCCccc
Confidence            999999999999999999999999976543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.57  E-value=1.3e-07  Score=74.31  Aligned_cols=88  Identities=14%  Similarity=0.092  Sum_probs=60.2

Q ss_pred             HHHHHHHhcCCchHHHhhHh--hhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           26 PIFFNAAAAGNSEPFKDMAG--EEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        26 ~~l~~a~~~g~~~~v~~ll~--~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      .++|+++...+.+-+...+.  ....+...|..|.||||+|  +..|+.+.++.|+..    +.++-.++..||+|||.|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlA--V~Lg~~~~a~~Ll~a----~Adv~~kN~~gWs~L~EA   95 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLA--VRLGHVEAARILLSA----GADVSIKNNEGWSPLHEA   95 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHH--HHhcCHHHHHHHHhc----CCCccccccccccHHHHH
Confidence            45777777777766666444  2334446667777777777  777777777777765    556666777777777777


Q ss_pred             HHcCCHHHHHHHHHhh
Q 037129          104 AKFGHSDIVRFLVERA  119 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~  119 (227)
                      +.+|+.+++..++.+.
T Consensus        96 v~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   96 VSTGNEQIITEVLRHL  111 (560)
T ss_pred             HHcCCHHHHHHHHHHh
Confidence            7777777776666653

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.48  E-value=3.3e-07  Score=72.17  Aligned_cols=89  Identities=11%  Similarity=-0.021  Sum_probs=69.1

Q ss_pred             hhhhccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCC
Q 037129           18 REIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDD   97 (227)
Q Consensus        18 ~~~~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   97 (227)
                      ..|..+ .+|||.|+.-|+.+.+..|+.+|.++...+..|+++||.|  +..|+.+++..++.++....           
T Consensus        50 ~~D~~g-~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EA--v~~g~~q~i~~vlr~~~~q~-----------  115 (560)
T KOG0522|consen   50 RRDPPG-RTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEA--VSTGNEQIITEVLRHLKYQA-----------  115 (560)
T ss_pred             cccCCC-CccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHH--HHcCCHHHHHHHHHHhHHHH-----------
Confidence            344455 7789999999999999999999999889999999999999  99999999988888643110           


Q ss_pred             CHHHHHHHcCCHHHHHHHHHhhhccc
Q 037129           98 TPLHVAAKFGHSDIVRFLVERAKLTQ  123 (227)
Q Consensus        98 tpl~~A~~~~~~~~v~~Ll~~~~~~~  123 (227)
                         ..-...+.+.+++.|.+.+....
T Consensus       116 ---~~~~~~~~p~ll~~l~~~~DFYm  138 (560)
T KOG0522|consen  116 ---WEKWERRLPRLLAKLSEMPDFYM  138 (560)
T ss_pred             ---HHHHHhcchHHHHHHHhCccceE
Confidence               11123556677788877765443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.41  E-value=9.2e-07  Score=74.95  Aligned_cols=80  Identities=26%  Similarity=0.314  Sum_probs=68.0

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHh
Q 037129          145 KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMR  224 (227)
Q Consensus       145 ~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~  224 (227)
                      ..|.++||.|+..+..-.+++|++.|+++ +..+..|++|+|.+...|+...+..|+++|++.+..+.+|++|+++|...
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            45688889999888888889999888884 48888889999999989988888888889999999999999998888654


Q ss_pred             c
Q 037129          225 S  225 (227)
Q Consensus       225 ~  225 (227)
                      .
T Consensus       733 ~  733 (785)
T KOG0521|consen  733 A  733 (785)
T ss_pred             c
Confidence            3

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.35  E-value=9.1e-07  Score=70.46  Aligned_cols=97  Identities=13%  Similarity=0.155  Sum_probs=81.4

Q ss_pred             hccCCHHHHHHHhcCCchHHHhhHhhhh----ccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCC
Q 037129           21 KQQMDPIFFNAAAAGNSEPFKDMAGEEI----KSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKD   96 (227)
Q Consensus        21 ~~~~~~~l~~a~~~g~~~~v~~ll~~~~----~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   96 (227)
                      ......-|..|+...++..+-.|+.+|-    +-...+.+|.|+||+|  +..|+.....+|+=+    +.++..+|..|
T Consensus       621 e~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa--~~~gnVvl~QLLiWy----g~dv~~rda~g  694 (749)
T KOG0705|consen  621 EEPLGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLA--ARKGNVVLAQLLIWY----GVDVMARDAHG  694 (749)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhh--hhhcchhHHHHHHHh----CccceecccCC
Confidence            3444456889999999999999998543    3225556789999999  999999888888754    88899999999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhhhccc
Q 037129           97 DTPLHVAAKFGHSDIVRFLVERAKLTQ  123 (227)
Q Consensus        97 ~tpl~~A~~~~~~~~v~~Ll~~~~~~~  123 (227)
                      .|+|++|-..|..+++..|+++|....
T Consensus       695 ~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  695 RTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             chhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            999999999999999999999998754

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.32  E-value=2.1e-06  Score=59.01  Aligned_cols=69  Identities=22%  Similarity=0.105  Sum_probs=45.8

Q ss_pred             cccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHH
Q 037129           87 LLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEIL  166 (227)
Q Consensus        87 ~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~l  166 (227)
                      .++|.+|..|||+++.|+..|+.+.+.||+++|.....                 ..+..+.+++.+|-..|..+++..|
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vg-----------------v~d~ssldaaqlaek~g~~~fvh~l   65 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVG-----------------VTDESSLDAAQLAEKGGAQAFVHSL   65 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCccccc-----------------ccccccchHHHHHHhcChHHHHHHH
Confidence            34666777777777777777777777777777743322                 2566677777777777777777777


Q ss_pred             HhcCCC
Q 037129          167 TKEDPD  172 (227)
Q Consensus       167 l~~~~~  172 (227)
                      .+...+
T Consensus        66 fe~~~e   71 (223)
T KOG2384|consen   66 FENDRE   71 (223)
T ss_pred             HHHhcc
Confidence            665433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.21  E-value=2.6e-06  Score=64.70  Aligned_cols=60  Identities=13%  Similarity=0.116  Sum_probs=55.3

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCC
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCP   86 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~   86 (227)
                      ...|+.||+.|+++.|++|++.|+++|..|+...+||.+|  +..|+.+++++|+++++-|.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lA--sLcGHe~vvklLLenGAiC~   96 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLA--SLCGHEDVVKLLLENGAICS   96 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHH--HHcCcHHHHHHHHHcCCccc
Confidence            5569999999999999999999999999999999999999  99999999999999866553

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.15  E-value=9.2e-06  Score=61.81  Aligned_cols=67  Identities=27%  Similarity=0.374  Sum_probs=57.7

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCC
Q 037129          148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGK  215 (227)
Q Consensus       148 ~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  215 (227)
                      .--|..||+.|..+.+++|++.|.+++ ..|.+...||.+|+..|+..+|++|+++|+--+....+|.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN-~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~  103 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVN-AVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGD  103 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcc-hhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcc
Confidence            446789999999999999999999965 8999999999999999999999999999965544444443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.00  E-value=7.9e-06  Score=69.55  Aligned_cols=116  Identities=22%  Similarity=0.186  Sum_probs=85.5

Q ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHHh-hhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHh-
Q 037129           91 QVNAKDDTPLHVAAKFGHSDIVRFLVER-AKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK-  168 (227)
Q Consensus        91 ~~~~~g~tpl~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~-  168 (227)
                      .....|++.+|+++..++.-+++.+++- |.....                  .+.++.-.+|+++ .+..+..-+++. 
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~e------------------ld~d~qgV~hfca-~lg~ewA~ll~~~  629 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLE------------------LDRDGQGVIHFCA-ALGYEWAFLPISA  629 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchh------------------hcccCCChhhHhh-hcCCceeEEEEee
Confidence            4456789999999999998888888885 444322                  4566666777744 445555555543 


Q ss_pred             cCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCC------CcccCCCCCCHHHHHHHhcC
Q 037129          169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTS------VSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       169 ~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~l~~a~~~~~  226 (227)
                      .|.. ...+|..|+||||+|+.+|+..++..|++.|++      ++.....|.|+-..|-.+||
T Consensus       630 ~~~a-i~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~  692 (975)
T KOG0520|consen  630 DGVA-IDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGH  692 (975)
T ss_pred             cccc-cccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccc
Confidence            4444 448899999999999999999999999987754      45556678899888888776

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.99  E-value=2.1e-05  Score=54.25  Aligned_cols=70  Identities=19%  Similarity=0.146  Sum_probs=61.2

Q ss_pred             HhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCccc
Q 037129          141 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHE  210 (227)
Q Consensus       141 ~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~  210 (227)
                      +.+|..|+|++++|+.-|+.+.+.||+.+|+......+..+.+.+.+|-..|..+++..|.++-.+-+..
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p   75 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHP   75 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCc
Confidence            4588999999999999999999999999995556789999999999999999999999999875444433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.99  E-value=1e-05  Score=68.78  Aligned_cols=88  Identities=28%  Similarity=0.394  Sum_probs=77.2

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCC
Q 037129           94 AKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDY  173 (227)
Q Consensus        94 ~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~  173 (227)
                      ..|.++||.|+.++...++++|+++|++.+.                  .+..|.+|+|.+...|+...+..+++.|++ 
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~------------------~d~~g~~plh~~~~~g~~~~~~~ll~~~a~-  714 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNA------------------LDSKGRTPLHHATASGHTSIACLLLKRGAD-  714 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchh------------------hhccCCCcchhhhhhcccchhhhhcccccc-
Confidence            4678999999999999999999999998554                  789999999999999999999999999998 


Q ss_pred             CcccccCCCCHHHHHHHcCcHHHHHHH
Q 037129          174 PYSANNYGKTPLYMAAESRSSNMVLAL  200 (227)
Q Consensus       174 ~~~~~~~~~t~l~~A~~~~~~~~v~~L  200 (227)
                      ++..+..|.+|+.+|....+.+++-++
T Consensus       715 ~~a~~~~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  715 PNAFDPDGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             ccccCccCcchhhHHhhhccccHHHHH
Confidence            558899999999999777666555444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.82  E-value=1.3e-05  Score=68.29  Aligned_cols=129  Identities=13%  Similarity=0.008  Sum_probs=94.1

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhh-hhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHH
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGE-EIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLH  101 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~  101 (227)
                      ..-..+|.++..+....+..+++- +......|..|...+|++  +. +..+...++...   .+..++.+|..||||||
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfc--a~-lg~ewA~ll~~~---~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFC--AA-LGYEWAFLPISA---DGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHh--hh-cCCceeEEEEee---cccccccccCCCCcccc
Confidence            345579999999999999999983 666667788888888885  44 444444444432   26668899999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhc
Q 037129          102 VAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKE  169 (227)
Q Consensus       102 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~  169 (227)
                      ||+.+|+..++.-|++.|+.......            ..-....|.|+--.|..+|+..+.-+|-+.
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~td------------ps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTD------------PSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccC------------CCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999998877653110            011334577887888888877766665443

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.54  E-value=0.00012  Score=57.75  Aligned_cols=63  Identities=22%  Similarity=0.194  Sum_probs=51.4

Q ss_pred             HHHHHHHHhcCCCCCc-----ccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Q 037129          160 VDVVEILTKEDPDYPY-----SANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA  222 (227)
Q Consensus       160 ~~~~~~ll~~~~~~~~-----~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  222 (227)
                      ...+++|.+.+.+.+.     ..+.--.|+||+|+..|.-++|.+|++.|+|+..+|..|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            5677888877666432     12233568999999999999999999999999999999999998765

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.40  E-value=0.0004  Score=58.45  Aligned_cols=129  Identities=16%  Similarity=0.114  Sum_probs=105.4

Q ss_pred             CchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHH
Q 037129           58 NTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAW  137 (227)
Q Consensus        58 ~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  137 (227)
                      .--...|  +..|+.-.|+.+++......-++|..|.-|.++|+.|+...+.++.++|+++...                
T Consensus        26 e~~fL~a--~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~----------------   87 (822)
T KOG3609|consen   26 EKGFLLA--HENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE----------------   87 (822)
T ss_pred             hHHHHHH--HHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc----------------
Confidence            3445567  8999999999988876655567888999999999999999999999999997532                


Q ss_pred             HHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCC---------CcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCc
Q 037129          138 QIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDY---------PYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS  208 (227)
Q Consensus       138 ~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~---------~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  208 (227)
                               -..+|.+|+..|.++.|+.++.+....         +......+.||+..|+..++.|+++.|+++|+++.
T Consensus        88 ---------~gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   88 ---------EGDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             ---------cchHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence                     146899999999999999999874332         22344568899999999999999999999999887


Q ss_pred             ccCCC
Q 037129          209 HEGPN  213 (227)
Q Consensus       209 ~~~~~  213 (227)
                      .....
T Consensus       159 ~PH~~  163 (822)
T KOG3609|consen  159 IPHDI  163 (822)
T ss_pred             CCccc
Confidence            65443

>smart00248 ANK ankyrin repeats

Probab=97.31  E-value=0.0006  Score=31.57  Aligned_cols=27  Identities=37%  Similarity=0.598  Sum_probs=16.3

Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCC
Q 037129          181 GKTPLYMAAESRSSNMVLALLENRTSV  207 (227)
Q Consensus       181 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~  207 (227)
                      |.||+|.|+..++.++++.|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            455666666666666666666655544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.16  E-value=0.00076  Score=31.19  Aligned_cols=27  Identities=33%  Similarity=0.642  Sum_probs=22.7

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhhhc
Q 037129           95 KDDTPLHVAAKFGHSDIVRFLVERAKL  121 (227)
Q Consensus        95 ~g~tpl~~A~~~~~~~~v~~Ll~~~~~  121 (227)
                      .|.||+|+|+..++.++++.|++.+..
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            367899999999999999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.85  E-value=0.025  Score=39.36  Aligned_cols=145  Identities=10%  Similarity=0.047  Sum_probs=87.1

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      ....|..|+..+.+.+++++-+...+  . -...++.+..|  |...+.|+|+++-+.+.         -.+-.+.+..|
T Consensus        46 ~~CLl~HAVk~nmL~ILqkyke~L~~--~-~~~~q~LFElA--C~~qkydiV~WI~qnL~---------i~~~~~iFdIA  111 (192)
T PF03158_consen   46 MWCLLYHAVKYNMLSILQKYKEDLEN--E-RYLNQELFELA--CEEQKYDIVKWIGQNLH---------IYNPEDIFDIA  111 (192)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHhhc--c-hhHHHHHHHHH--HHHccccHHHHHhhccC---------CCCchhhhhhh
Confidence            45567778888888887777653322  1 12456777778  88888888888866431         11223445566


Q ss_pred             HHcCCHHHHHHHHHhhhcccccchh-hhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCC
Q 037129          104 AKFGHSDIVRFLVERAKLTQHENEE-LESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGK  182 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~  182 (227)
                      ...+..++  +.+.+....+..... ...           .+.--..-|..|+..|...++-..++.|.++.       .
T Consensus       112 ~~~kDlsL--yslGY~l~~~~~~~~~~~d-----------~~~ll~~hl~~a~~kgll~F~letlkygg~~~-------~  171 (192)
T PF03158_consen  112 FAKKDLSL--YSLGYKLLFNRMMSEHNED-----------PTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD-------I  171 (192)
T ss_pred             hhccchhH--HHHHHHHHHhhcccccccC-----------HHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc-------H
Confidence            66666655  222221111100000 000           00000124678999999999988888887753       2


Q ss_pred             CHHHHHHHcCcHHHHHHHHh
Q 037129          183 TPLYMAAESRSSNMVLALLE  202 (227)
Q Consensus       183 t~l~~A~~~~~~~~v~~Ll~  202 (227)
                      +.|..|+.+++.+++.+++.
T Consensus       172 ~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  172 IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHhhHHHHHHHhhc
Confidence            78999999999999988864

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.94  E-value=0.012  Score=47.01  Aligned_cols=40  Identities=18%  Similarity=0.125  Sum_probs=26.6

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhh
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHIN   64 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a   64 (227)
                      .++||+|+..|+-++|++||+.|.|+..+|..|.||-.++
T Consensus       431 sT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls  470 (591)
T KOG2505|consen  431 STFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLS  470 (591)
T ss_pred             chHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccc
Confidence            4556666666666666666666666666666666666665

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.90  E-value=0.059  Score=38.88  Aligned_cols=96  Identities=16%  Similarity=0.205  Sum_probs=64.4

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHh--cCCHHHHHHHHhcCCCCC
Q 037129           97 DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC--HQNVDVVEILTKEDPDYP  174 (227)
Q Consensus        97 ~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~--~~~~~~~~~ll~~~~~~~  174 (227)
                      .+++.+++..+..+++.+|+.+-.......             ..+  ..+..-+.++.+  ..+..++++++++|--..
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv-------------~~~--~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~v  244 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDV-------------ASM--EKELYDIEYLLSEHSASYKVLEYFINRGLVDV  244 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchh-------------hhc--CcchhhHHHHHhhcCCcHHHHHHHHhcccccc
Confidence            467777777777788888887644332210             111  112223444444  356678899998874322


Q ss_pred             ---cccccCCCCHHHHHHHcCcHHHHHHHHhcCCCC
Q 037129          175 ---YSANNYGKTPLYMAAESRSSNMVLALLENRTSV  207 (227)
Q Consensus       175 ---~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  207 (227)
                         ...-.+|.|-|.-|..+++.+++.+|+++|+..
T Consensus       245 N~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  245 NKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             chhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence               234568999999999999999999999999854

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.80  E-value=0.031  Score=40.21  Aligned_cols=94  Identities=11%  Similarity=0.089  Sum_probs=60.0

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhhcccccc----CCCCchhhhhhhhcccccccHHHHHHHHHhCCcccc---cccCCCC
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEIKSLLTA----KTENTILHINIISQERENVSTKFVAEILEKCPLLLL---QVNAKDD   97 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~----~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~g~   97 (227)
                      ..++..++..+..+++.+|+. ..++...|    ..+.--+.++.+.-..+..+++++++.+   -..+|   .+-.+|.
T Consensus       180 ~~Am~~si~~~K~dva~~lls-~f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~G---lv~vN~~F~~~NSGd  255 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLS-KFNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRG---LVDVNKKFQKVNSGD  255 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHh-hcceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhcc---ccccchhhhccCCcc
Confidence            446778888888888888886 22222221    1233344454223334445556665543   22233   2346799


Q ss_pred             CHHHHHHHcCCHHHHHHHHHhhhcc
Q 037129           98 TPLHVAAKFGHSDIVRFLVERAKLT  122 (227)
Q Consensus        98 tpl~~A~~~~~~~~v~~Ll~~~~~~  122 (227)
                      |.|..|+++++.+++.+|+++|+..
T Consensus       256 tMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  256 TMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             hHHHhHHhcCcHHHHHHHHHcCccc
Confidence            9999999999999999999999853

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.89  E-value=0.034  Score=33.12  Aligned_cols=48  Identities=17%  Similarity=0.129  Sum_probs=39.2

Q ss_pred             CchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHh
Q 037129           58 NTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVER  118 (227)
Q Consensus        58 ~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~  118 (227)
                      ...+..|  +..|+.|+++.+++..           ......+..|+.+.+-++++||++.
T Consensus         7 ~~tl~~A--i~GGN~eII~~c~~~~-----------~~~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYA--IIGGNFEIINICLKKN-----------KPDNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHH--HhCCCHHHHHHHHHHh-----------ccHHHHHHHHHHHhhHHHHHHHHHh
Confidence            4667889  9999999999998742           1114569999999999999999987

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.73  E-value=0.096  Score=31.17  Aligned_cols=47  Identities=21%  Similarity=0.301  Sum_probs=39.5

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhc
Q 037129           98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKE  169 (227)
Q Consensus        98 tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~  169 (227)
                      .-+..|+.+|+.++++.+++.+...                         ..++..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~~-------------------------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKPD-------------------------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhccH-------------------------HHHHHHHHHHhhHHHHHHHHHh
Confidence            4578999999999999999865321                         3578999999999999999975

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.30  E-value=0.32  Score=34.05  Aligned_cols=128  Identities=15%  Similarity=0.058  Sum_probs=82.1

Q ss_pred             hhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHH
Q 037129           60 ILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQI  139 (227)
Q Consensus        60 ~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  139 (227)
                      .+.-|  ++.+.+.++....+.+...       -...++.+-.||+..+.++|+|+-+.-                    
T Consensus        49 Ll~HA--Vk~nmL~ILqkyke~L~~~-------~~~~q~LFElAC~~qkydiV~WI~qnL--------------------   99 (192)
T PF03158_consen   49 LLYHA--VKYNMLSILQKYKEDLENE-------RYLNQELFELACEEQKYDIVKWIGQNL--------------------   99 (192)
T ss_pred             HHHHH--HHcCcHHHHHHHHHHhhcc-------hhHHHHHHHHHHHHccccHHHHHhhcc--------------------
Confidence            34557  8888888887777754311       124566778999999999999995432                    


Q ss_pred             HHhccCCCCcHHHHHHhcCCHHHHH----HHHhcCCCC-CcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 037129          140 IRMTNKEKNTALHEAVCHQNVDVVE----ILTKEDPDY-PYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNG  214 (227)
Q Consensus       140 ~~~~~~~~~t~l~~A~~~~~~~~~~----~ll~~~~~~-~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  214 (227)
                         .-.+-.+.+-.|....+.+...    .++.+.... ......--..-|..|+..|-...+.-.+++|.+++.     
T Consensus       100 ---~i~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~-----  171 (192)
T PF03158_consen  100 ---HIYNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI-----  171 (192)
T ss_pred             ---CCCCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH-----
Confidence               1234455667888887776532    233322111 000000011236789999999999999999998874     


Q ss_pred             CCHHHHHHHhc
Q 037129          215 KTALHAAAMRS  225 (227)
Q Consensus       215 ~t~l~~a~~~~  225 (227)
                       ++|..|+..+
T Consensus       172 -~vls~Av~yn  181 (192)
T PF03158_consen  172 -IVLSQAVKYN  181 (192)
T ss_pred             -HHHHHHHHhh
Confidence             6788887654

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	227
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-09
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-08
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-08
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-08
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-07
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		5e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-06
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-06
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-06
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-04
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-06
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-06
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-06
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		8e-06
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-05
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-05
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		7e-04
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		6e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		8e-05
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		9e-05
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-04
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		2e-04
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		2e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		5e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		5e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		5e-04
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		6e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		6e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		6e-04
1uoh_A	226	Human Gankyrin Length = 226		7e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		7e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		7e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 25/176 (14%)
Query: 52  LTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDI 111
           L     +T LHI       E V      E  + C      +  K  TPLHVAAK+G   +
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRV 161
Query: 112 VRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDP 171
              L+ER     H N                  K   T LH AV H N+D+V++L     
Sbjct: 162 AELLLER---DAHPNA---------------AGKNGLTPLHVAVHHNNLDIVKLLLPRG- 202
Query: 172 DYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSYA 227
             P+S    G TPL++AA+     +  +LL+   S + E   G T LH AA   +A
Sbjct: 203 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 258

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 19/129 (14%)
Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
           TPLH+AA+ GH ++V+ L+E                  A   +   +K   T LH A  +
Sbjct: 4   TPLHLAARNGHLEVVKLLLE------------------AGADVNAKDKNGRTPLHLAARN 45
Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA 217
            +++VV++L +   D      N G+TPL++AA +    +V  LLE    V+ +  NG+T 
Sbjct: 46  GHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Query: 218 LHAAAMRSY 226
           LH AA   +
Sbjct: 105 LHLAARNGH 113

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 22/131 (16%)
Query: 91  QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
            VNA+DD   TPLH+AA  GH +IV  L++             + V AA       +K  
Sbjct: 39  DVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHG-----------ADVNAA-------DKMG 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
           +T LH A  + ++++VE+L K   D   + + YG TPL++AA++    +V  LL+    V
Sbjct: 81  DTPLHLAALYGHLEIVEVLLKNGADVN-ATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Query: 208 SHEGPNGKTAL 218
           + +   GKTA 
Sbjct: 140 NAQDKFGKTAF 150

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 17/149 (11%)
Query: 93  NAKDDTPLHVAAKFGHSDIVRFLVERAKL----------------TQHENEELESRVGAA 136
           +A+  T LH+AAK GH ++V++L+   ++                T++++ +L   + + 
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
              I + + E+N  LH A     VD+ EIL     D  ++ N +G +PL++AA     + 
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDC 192
Query: 197 VLALLENRTSVSHEGPNGKTALHAAAMRS 225
           V+  L   + V+ +   G+T L  A++ S
Sbjct: 193 VVLFLSRDSDVTLKNKEGETPLQCASLNS 221

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 22/130 (16%)
Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VNA DD   TPLH+AA  GH +IV  L++          ++ +R    W           
Sbjct: 40  VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA-------DVNARDTDGW----------- 81
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           T LH A  + ++++VE+L K   D   + + YG TPL++AA+     +V  LL++   V+
Sbjct: 82  TPLHLAADNGHLEIVEVLLKYGADVN-AQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 209 HEGPNGKTAL 218
            +   GKTA 
Sbjct: 141 AQDKFGKTAF 150

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 22/131 (16%)
Query: 91  QVNAKDDT---PLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
            VNA+D T   PLH+AA FGH +IV  L++        +   +  +G             
Sbjct: 39  DVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA-----DVNAKDSLGV------------ 81
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
            T LH A    ++++VE+L K   D   S +++G TPL++AA+     +V  LL+N   V
Sbjct: 82  -TPLHLAARRGHLEIVEVLLKNGADVNAS-DSHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Query: 208 SHEGPNGKTAL 218
           + +   GKTA 
Sbjct: 140 NAQDKFGKTAF 150

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 22/131 (16%)
Query: 91  QVNAKD---DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
            VNA+D   DTPLH+AA+ GH +IV  L++                GA    +  +    
Sbjct: 39  DVNAEDTYGDTPLHLAARVGHLEIVEVLLKN---------------GADVNALDFSG--- 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
           +T LH A    ++++VE+L K   D   + +  G TPL++AA++    +V  LL+    V
Sbjct: 81  STPLHLAAKRGHLEIVEVLLKYGADVN-ADDTIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Query: 208 SHEGPNGKTAL 218
           + +   GKTA 
Sbjct: 140 NAQDKFGKTAF 150

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 22/131 (16%)
Query: 91  QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
            VNAKD    TPLH+AA+ GH +IV  L++                  A   +   +K+ 
Sbjct: 39  DVNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------AGADVNAKDKDG 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
            T LH A    ++++VE+L K   D   + +  G TPL++AA      +V  LL+    V
Sbjct: 81  YTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Query: 208 SHEGPNGKTAL 218
           + +   GKTA 
Sbjct: 140 NAQDKFGKTAF 150

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 22/131 (16%)
Query: 91  QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
            VNA D    TPLH+AA +GH +IV  L++                GA    I +     
Sbjct: 39  DVNATDASGLTPLHLAATYGHLEIVEVLLKH---------------GADVNAIDIXG--- 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
           +T LH A    ++++VE+L K   D   + + +G TPL++AA      +V  LL++   V
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 208 SHEGPNGKTAL 218
           + +   GKTA 
Sbjct: 140 NAQDKFGKTAF 150

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 22/131 (16%)
Query: 91  QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
            VNA D    TPLH+AA +GH +IV  L++                GA    I +     
Sbjct: 39  DVNATDASGLTPLHLAATYGHLEIVEVLLKH---------------GADVNAIDIMG--- 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
           +T LH A    ++++VE+L K   D   + + +G TPL++AA      +V  LL++   V
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 208 SHEGPNGKTAL 218
           + +   GKTA 
Sbjct: 140 NAQDKFGKTAF 150

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 71  ENVSTKFVAEILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENE 127
           EN +   V ++LE        VNA D    TPLH+AA+ GH ++V+ L     L+Q  + 
Sbjct: 13  ENGNKDRVKDLLENGA----DVNASDSDGKTPLHLAAENGHKEVVKLL-----LSQGADP 63
Query: 128 ELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYM 187
             +   G              T LH A  + + +VV++L  +  D P + ++ GKTPL++
Sbjct: 64  NAKDSDG-------------KTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHL 109
Query: 188 AAESRSSNMVLALLENRTSVSHEGPNGKTALHAA 221
           AAE+    +V  LL      +    +G+T L  A
Sbjct: 110 AAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLA 143

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 140 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLA 199
           +  ++ +  T LH A  + + +VV++L  +  D P + ++ GKTPL++AAE+    +V  
Sbjct: 30  VNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKL 88
Query: 200 LLENRTSVSHEGPNGKTALHAAAMRSY 226
           LL      + +  +GKT LH AA   +
Sbjct: 89  LLSQGADPNAKDSDGKTPLHLAAENGH 115

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 22/128 (17%)
Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VNAKD    TPLH+AA+ GH +IV  L++                  A   +   +K+  
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------AGADVNAKDKDGY 69
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           T LH A    ++++VE+L K   D   + +  G TPL++AA      +V  LL+    V+
Sbjct: 70  TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 209 HEGPNGKT 216
            +   GKT
Sbjct: 129 AQDKFGKT 136

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 22/129 (17%)
Query: 91  QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
            VNAKD    TPLH+AA+ GH +IV  L++                  A   +   +K+ 
Sbjct: 27  DVNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------AGADVNAKDKDG 68
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
            T LH A    ++++VE+L K   D   + +  G TPL++AA      +V  LL+    V
Sbjct: 69  YTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 208 SHEGPNGKT 216
           + +   GKT
Sbjct: 128 NAQDKFGKT 136

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
           SD+ R L+E A+  Q +   +    GA    +   +    T LH A    ++++VE+L K
Sbjct: 12  SDLGRKLLEAARAGQDDEVRILMANGAD---VNAADNTGTTPLHLAAYSGHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
              D   S + +G TPL++AA      +V  LL+N   V+    +G T LH AA   Y
Sbjct: 69  HGADVDAS-DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGY 125

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 22/131 (16%)
Query: 91  QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
            VNA D    TPLH+AA FGH +IV  L++        +   +  +G             
Sbjct: 39  DVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA-----DVNADDSLGV------------ 81
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
            T LH A    +++VVE+L K   D   + +N G TPL++AA      +V  LL++   V
Sbjct: 82  -TPLHLAADRGHLEVVEVLLKNGADVNANDHN-GFTPLHLAANIGHLEIVEVLLKHGADV 139
Query: 208 SHEGPNGKTAL 218
           + +   GKTA 
Sbjct: 140 NAQDKFGKTAF 150

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 22/131 (16%)
Query: 91  QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
            VNA D+   TPLH+AA  GH +IV  L++                GA      +T    
Sbjct: 39  DVNATDNDGYTPLHLAASNGHLEIVEVLLKN---------------GADVNASDLTGI-- 81
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
            T LH A    ++++VE+L K   D   + +N G TPL++AA+     +V  LL++   V
Sbjct: 82  -TPLHLAAATGHLEIVEVLLKHGADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
Query: 208 SHEGPNGKTAL 218
           + +   GKTA 
Sbjct: 140 NAQDKFGKTAF 150

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
           SD+ + L+E A+  Q +   +    GA    +  T+   +T LH A    ++++VE+L K
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGAD---VNATDWLGHTPLHLAAKTGHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
              D   + +NYG TPL++AA++    +V  LL++   V+ +   G T LH AA   +
Sbjct: 69  YGADVN-AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGH 125

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 26/154 (16%)
Query: 71  ENVSTKFVAEILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENE 127
           EN +   V +++E        VNA D    TPLH AAK GH +IV+ L+ +         
Sbjct: 13  ENGNKDRVKDLIENGA----DVNASDSDGRTPLHYAAKEGHKEIVKLLISKG-------- 60
Query: 128 ELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYM 187
                       +   + +  T LH A    + ++V++L  +  D   + ++ G+TPL+ 
Sbjct: 61  ----------ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHY 109
Query: 188 AAESRSSNMVLALLENRTSVSHEGPNGKTALHAA 221
           AA+     +V  L+     V+    +G+T L  A
Sbjct: 110 AAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLA 143

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 26/151 (17%)
Query: 71  ENVSTKFVAEILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENE 127
           EN +   V +++E        VNA D    TPLH AA+ GH ++V+ L+ +         
Sbjct: 13  ENGNKDRVKDLIENGA----DVNASDSDGRTPLHHAAENGHKEVVKLLISKG-------- 60
Query: 128 ELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYM 187
                       +   + +  T LH A  + + +VV++L  +  D   + ++ G+TPL+ 
Sbjct: 61  ----------ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHH 109
Query: 188 AAESRSSNMVLALLENRTSVSHEGPNGKTAL 218
           AAE+    +V  L+     V+    +G+T L
Sbjct: 110 AAENGHKEVVKLLISKGADVNTSDSDGRTPL 140

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
           TPLH+AA  GH +IV  L+               R GA    +   +    T LH A   
Sbjct: 37  TPLHMAAAVGHLEIVEVLL---------------RNGAD---VNAVDTNGTTPLHLAASL 78
Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA 217
            ++++VE+L K   D   + +  G TPLY+AA      +V  LL++   V+ +   GKTA
Sbjct: 79  GHLEIVEVLLKYGADVN-AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTA 137
Query: 218 L 218
Sbjct: 138 F 138

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 24/132 (18%)
Query: 91  QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
            VNA D    TPLH+    GH +I+  L++ A                    +  ++K  
Sbjct: 39  DVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA------------------DVNASDKSG 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNY-GKTPLYMAAESRSSNMVLALLENRTS 206
            T LH A    ++++VE+L K   D   +A +Y G TPL++AAE     +V  LL+    
Sbjct: 81  WTPLHLAAYRGHLEIVEVLLKYGADV--NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD 138
Query: 207 VSHEGPNGKTAL 218
           V+ +   GKTA 
Sbjct: 139 VNAQDKFGKTAF 150

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 19/105 (18%)
Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
           TPLH+AA+ GH ++V+ L+E                  A   +   +K   T LH A  +
Sbjct: 4   TPLHLAARNGHLEVVKLLLE------------------AGADVNAKDKNGRTPLHLAARN 45
Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE 202
            +++VV++L +   D      N G+TPL++AA +    +V  LLE
Sbjct: 46  GHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           T LH A  + +++VV++L +   D      N G+TPL++AA +    +V  LLE    V+
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 209 HEGPNGKTALHAAAMRSY 226
            +  NG+T LH AA   +
Sbjct: 63  AKDKNGRTPLHLAARNGH 80

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 22/131 (16%)
Query: 91  QVNAKD---DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
            VNA D    TPLH+AA +GH +IV  L++                      +   +   
Sbjct: 39  DVNAADVVGWTPLHLAAYWGHLEIVEVLLKNG------------------ADVNAYDTLG 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
           +T LH A    ++++VE+L K   D     +N G TPL++AA      +V  LL+    V
Sbjct: 81  STPLHLAAHFGHLEIVEVLLKNGADVNAKDDN-GITPLHLAANRGHLEIVEVLLKYGADV 139
Query: 208 SHEGPNGKTAL 218
           + +   GKTA 
Sbjct: 140 NAQDKFGKTAF 150

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           T LH A    ++++VE+L K   D   + +  G TPL++AA      +V  LL+N   V+
Sbjct: 49  TPLHLAAYWGHLEIVEVLLKNGADVN-AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 209 HEGPNGKTALHAAAMRSY 226
            +  NG T LH AA R +
Sbjct: 108 AKDDNGITPLHLAANRGH 125

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 26/154 (16%)
Query: 71  ENVSTKFVAEILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENE 127
           EN +   V ++LE         NA D    TPLH AA+ GH +IV+ L+ +         
Sbjct: 13  ENGNKDRVKDLLENG----ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN---- 64
Query: 128 ELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYM 187
                           + +  T LH A  + + ++V++L  +  D P + ++ G+TPL+ 
Sbjct: 65  --------------AKDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHY 109
Query: 188 AAESRSSNMVLALLENRTSVSHEGPNGKTALHAA 221
           AAE+    +V  LL      +    +G+T L  A
Sbjct: 110 AAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLA 143

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
           SD+ + L+E A+  Q +   +    GA    +   +++ NT LH A  + ++++VE+L K
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGAD---VNANDRKGNTPLHLAADYDHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTAL 218
              D   + +N G TPL++AA      +V  LL++   V+ +   GKTA 
Sbjct: 69  HGADVN-AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
           SD+ + L+E A+  Q +   +    GA    +  T     T LH A    ++++VE+L K
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGL---TPLHLAAVSGHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA 222
              D   +A+ YG TPL++AA +    +V  LL+    V+     G T LH AA
Sbjct: 69  HGADVD-AADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAA 121

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 137 WQI-IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSN 195
           W++ +   N + +T LH AV H++ ++V +L     D        G+TPL++A E+++++
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS 206
Query: 196 MVLALLENRTSVSHEGPNGKTALHAAAMR 224
           ++  LL+     +     G+T L +A +R
Sbjct: 207 VLELLLKAGADPTARMYGGRTPLGSALLR 235

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 137 WQI-IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSN 195
           W++ +   N + +T LH AV H++ ++V +L     D        G+TPL++A E+++++
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS 206
Query: 196 MVLALLENRTSVSHEGPNGKTALHAAAMR 224
           ++  LL+     +     G+T L +A +R
Sbjct: 207 VLELLLKAGADPTARMYGGRTPLGSALLR 235

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
           SD+ + L+E A+  Q +   + +  GA    +   +   +T LH A    ++++VE+L K
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILTANGAD---VNANDYWGHTPLHLAAMLGHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTAL 218
              D   + N  G+TPL++AA +    +V  LL++   V+ +   GKTA 
Sbjct: 69  NGADVNATGNT-GRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 24/132 (18%)
Query: 91  QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
            VNA+D    TPLH+AA  GH +IV  L++                      +   +   
Sbjct: 39  DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG------------------ADVNAVDHAG 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNY-GKTPLYMAAESRSSNMVLALLENRTS 206
            T L  A    ++++VE+L K   D   +AN+  G TPL++AA      +V  LL+N   
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNGADV--NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Query: 207 VSHEGPNGKTAL 218
           V+ +   GKTA 
Sbjct: 139 VNAQDKFGKTAF 150

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 127 EELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS-ANNYGKTPL 185
           +EL+ R+ A   +   T+++  TALH A    + ++VE L +     P +  ++ G +PL
Sbjct: 20  DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 77
Query: 186 YMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRS 225
           ++AA +    +V ALL     V+    NG T LH AA ++
Sbjct: 78  HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN 117

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 127 EELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS-ANNYGKTPL 185
           +EL+ R+ A   +   T+++  TALH A    + ++VE L +     P +  ++ G +PL
Sbjct: 20  DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 77
Query: 186 YMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRS 225
           ++AA +    +V ALL     V+    NG T LH AA ++
Sbjct: 78  HIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN 117

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 19/129 (14%)
Query: 97  DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC 156
           DTPLH+A   G+   V  LV    L Q    EL+           + N  + T LH AV 
Sbjct: 10  DTPLHIAVVQGNLPAVHRLV---NLFQQGGRELD-----------IYNNLRQTPLHLAVI 55
Query: 157 HQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRT--SVSHEGPN- 213
                VV +L       P + + +G+T  ++A E RS   + ALL++    ++  E  N 
Sbjct: 56  TTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY 114
Query: 214 -GKTALHAA 221
            G TALH A
Sbjct: 115 DGLTALHVA 123

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 27/177 (15%)
Query: 74  STKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELES-- 131
            TK V EIL+     + +V+ + +TPL++A      +I + L++R      +N   +S  
Sbjct: 17  DTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPY 76
Query: 132 -RVGA-------AWQIIRMT------NKEKNTALHEAVCHQNVDVVEIL---TKEDPDYP 174
              GA       A+ +   T      N+    AL  A    ++D V++L    +ED D+ 
Sbjct: 77  LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ 136
Query: 175 YSANNYGKTPLYMAAESRSSN-----MVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
              N++G T L  A   R  N     +V  L+EN    S +  +G+TA+  A  + Y
Sbjct: 137 ---NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGY 190

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 82  LEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQ 138
           L K P   L VN       +PLHVAA  G +D++  L++             +  GA   
Sbjct: 69  LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHG-----------ANAGA--- 114
Query: 139 IIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVL 198
                N ++   LH A    +  VV+ L   +   P   +  G TPL  A       +V 
Sbjct: 115 ----RNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVA 169
Query: 199 ALLENRTSVSHEGPNGKTALHAAAMRSY 226
            LL++  S++     G TALH A +  +
Sbjct: 170 LLLQHGASINASNNKGNTALHEAVIEKH 197

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 57/139 (41%), Gaps = 24/139 (17%)
Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VN  D+   TPL  A+ FG  + VRFL+E                GA   I+    KE+ 
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEW---------------GADPHILA---KERE 70
Query: 149 TALHEAVCHQNVDVVEILTKEDPDY-PYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
           +AL  A      D+V +L + D D   Y  N  G TPL  A        V ALL     +
Sbjct: 71  SALSLASTGGYTDIVGLLLERDVDINIYDWN--GGTPLLYAVRGNHVKCVEALLARGADL 128
Query: 208 SHEGPNGKTALHAAAMRSY 226
           + E  +G T +  A    Y
Sbjct: 129 TTEADSGYTPMDLAVALGY 147

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 22/146 (15%)
Query: 80  EILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAA 136
           EI+E    L + VN KDD   +PLH+AA  G  +IV+ L+ +               GA 
Sbjct: 54  EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK---------------GAQ 98
Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
              +   N+   T LH A   +N   + ++  E    P + ++Y  T ++ AA   +  M
Sbjct: 99  ---VNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKM 154
Query: 197 VLALLENRTSVSHEGPNGKTALHAAA 222
           +  LL  + S + +   G T LH A 
Sbjct: 155 IHILLYYKASTNIQDTEGNTPLHLAC 180

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 22/146 (15%)
Query: 80  EILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAA 136
           EI+E    L + VN KDD   +PLH+AA  G  +IV+ L+ +               GA 
Sbjct: 55  EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK---------------GAQ 99
Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
              +   N+   T LH A   +N   + ++  E    P + ++Y  T ++ AA   +  M
Sbjct: 100 ---VNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKM 155
Query: 197 VLALLENRTSVSHEGPNGKTALHAAA 222
           +  LL  + S + +   G T LH A 
Sbjct: 156 IHILLYYKASTNIQDTEGNTPLHLAC 181

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 57/139 (41%), Gaps = 24/139 (17%)
Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VN  D+   TPL  A+ FG  + VRFL+E                GA   I+    KE+ 
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEW---------------GADPHILA---KERE 70
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYP-YSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
           +AL  A      D+V +L + D D   Y  N  G TPL  A        V ALL     +
Sbjct: 71  SALSLASTGGYTDIVGLLLERDVDINIYDWN--GGTPLLYAVHGNHVKCVEALLARGADL 128
Query: 208 SHEGPNGKTALHAAAMRSY 226
           + E  +G T +  A    Y
Sbjct: 129 TTEADSGYTPMDLAVALGY 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-23
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-19
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-11
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-19
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-20
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-20
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-20
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-19
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-19
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-19
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-19
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-17
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-16
2rfa_A	232	Transient receptor potential cation channel subfa	6e-19
2rfa_A	232	Transient receptor potential cation channel subfa	4e-16
2rfa_A	232	Transient receptor potential cation channel subfa	3e-15
2rfa_A	232	Transient receptor potential cation channel subfa	2e-12
2rfa_A	232	Transient receptor potential cation channel subfa	1e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-18
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-17
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-17
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-17
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-04
2pnn_A	273	Transient receptor potential cation channel subfa	4e-16
2pnn_A	273	Transient receptor potential cation channel subfa	1e-15
2pnn_A	273	Transient receptor potential cation channel subfa	7e-15
2pnn_A	273	Transient receptor potential cation channel subfa	3e-10
2pnn_A	273	Transient receptor potential cation channel subfa	6e-10
2pnn_A	273	Transient receptor potential cation channel subfa	1e-06
2pnn_A	273	Transient receptor potential cation channel subfa	2e-04
2etb_A	256	Transient receptor potential cation channel subfam	4e-16
2etb_A	256	Transient receptor potential cation channel subfam	8e-15
2etb_A	256	Transient receptor potential cation channel subfam	3e-13
2etb_A	256	Transient receptor potential cation channel subfam	3e-08
2etb_A	256	Transient receptor potential cation channel subfam	1e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-15
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-15
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 93.4 bits (233), Expect = 1e-23
 Identities = 40/183 (21%), Positives = 67/183 (36%), Gaps = 40/183 (21%)

Query: 54  AKTEN--TILHINIISQERENVSTKFVAEILEKCPLLLLQ---VNAKDD---TPLHVAAK 105
             TE+  + LH+ II     +       E++     +      +N +++   TPLH+A  
Sbjct: 3   QLTEDGDSFLHLAII-----HEEKALTMEVIR---QVKGDLAFLNFQNNLQQTPLHLAVI 54

Query: 106 FGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEI 165
               +I   L+                 G       + +   NT LH A     +  V +
Sbjct: 55  TNQPEIAEALLGA---------------GCD---PELRDFRGNTPLHLACEQGCLASVGV 96

Query: 166 LTKEDPDYPYSA-----NNYGKTPLYMAAESRSSNMVLALLENRTSV-SHEGPNGKTALH 219
           LT+        +     N  G T L++A+      +V  L+     V + E  NG+TALH
Sbjct: 97  LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 156

Query: 220 AAA 222
            A 
Sbjct: 157 LAV 159

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 81.8 bits (203), Expect = 4e-19
 Identities = 38/175 (21%), Positives = 56/175 (32%), Gaps = 30/175 (17%)

Query: 58  NTILHINIISQERENVSTKFVAEIL-EKC--PLLLLQVNAKDD---TPLHVAAKFGHSDI 111
           NT LH+                 +L + C  P L   + A +    T LH+A+  G+  I
Sbjct: 79  NTPLHLACEQGCLA------SVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 132

Query: 112 VRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDP 171
           V  LV                 GA   +         TALH AV  QN D+V +L K   
Sbjct: 133 VELLVSL---------------GA--DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 175

Query: 172 DYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
           D        G +P  +     S+ +   L +         P  +          +
Sbjct: 176 D-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 144 NKEKNTALHEAVCHQN----VDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLA 199
            ++ ++ LH A+ H+     ++V+  +  +        NN  +TPL++A  +    +  A
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-LNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 200 LLENRTSVSHEGPNGKTALHAAAMR 224
           LL            G T LH A  +
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQ 88

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 25/84 (29%)

Query: 88  LLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII 140
           LLL+    VN       +P  +      + I + L +                    + +
Sbjct: 169 LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL---------------TL--ENL 211

Query: 141 RMTNKEKNTALHEAVCHQNVDVVE 164
           +M  + +          +  +  E
Sbjct: 212 QMLPESE-DEESYDTESEFTEFTE 234

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 89.8 bits (224), Expect = 9e-23
 Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 25/148 (16%)

Query: 82  LEKCPLLLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGA 135
           +      + Q   +N  D+   TPL  AA  G   +V FL++                GA
Sbjct: 16  MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN---------------GA 60

Query: 136 AWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSN 195
                ++  K + +AL  A      D+V++L     D     +  G TPL  A       
Sbjct: 61  D---PQLLGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVK 116

Query: 196 MVLALLENRTSVSHEGPNGKTALHAAAM 223
            V  LLE+    + E  +G  ++  A  
Sbjct: 117 CVKMLLESGADPTIETDSGYNSMDLAVA 144

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 79.7 bits (198), Expect = 5e-19
 Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 19/127 (14%)

Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
             +H  A  G    +   +E+                     I  T++E  T L  A  H
Sbjct: 5   LSVHQLAAQGEMLYLATRIEQ---------------ENV---INHTDEEGFTPLMWAAAH 46

Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA 217
             + VVE L +   D P       ++ L +A     +++V  LL+    V+    NG T 
Sbjct: 47  GQIAVVEFLLQNGAD-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP 105

Query: 218 LHAAAMR 224
           L  A   
Sbjct: 106 LLYAVHG 112

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 72.0 bits (178), Expect = 4e-16
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 26/123 (21%)

Query: 88  LLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII 140
            LLQ             + L +A   G++DIV+ L++                G     +
Sbjct: 54  FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC---------------GVD---V 95

Query: 141 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLAL 200
              +    T L  AV   +V  V++L +   D P    + G   + +A      ++   +
Sbjct: 96  NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVI 154

Query: 201 LEN 203
             +
Sbjct: 155 ESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 57.8 bits (141), Expect = 6e-11
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
           + ++H+      +  +    +++       +  G TPL  AA      +V  LL+N    
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 208 SHEGPNGKTALHAAAMR 224
              G   ++AL  A  +
Sbjct: 63  QLLGKGRESALSLACSK 79

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 42.4 bits (101), Expect = 2e-05
 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 4/40 (10%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVER-AKLTQHENE 127
              + D     + +A   G+  + + +     KL Q+  E
Sbjct: 128 PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 8/42 (19%), Positives = 14/42 (33%)

Query: 181 GKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA 222
               ++  A       +   +E    ++H    G T L  AA
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAA 44

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 89.0 bits (222), Expect = 2e-22
 Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 22/136 (16%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VN  D+   TPL  A+ FG  + VRFL+E                GA      +  KE+ 
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEW---------------GAD---PHILAKERE 70

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           +AL  A      D+V +L + D D     +  G TPL  A        V ALL     ++
Sbjct: 71  SALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT 129

Query: 209 HEGPNGKTALHAAAMR 224
            E  +G T +  A   
Sbjct: 130 TEADSGYTPMDLAVAL 145

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 78.6 bits (195), Expect = 1e-18
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 18/127 (14%)

Query: 96  DDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAV 155
           D   +H  A  G  D ++  + +               G    ++   ++   T L  A 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRK---------------GD--NLVNKPDERGFTPLIWAS 44

Query: 156 CHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGK 215
               ++ V  L +   D P+      ++ L +A+    +++V  LLE    ++    NG 
Sbjct: 45  AFGEIETVRFLLEWGAD-PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG 103

Query: 216 TALHAAA 222
           T L  A 
Sbjct: 104 TPLLYAV 110

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 76.7 bits (190), Expect = 8e-18
 Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 26/136 (19%)

Query: 88  LLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII 140
            LL+     +       + L +A+  G++DIV  L+ER                     I
Sbjct: 54  FLLEWGADPHILAKERESALSLASTGGYTDIVGLLLER---------------DVD---I 95

Query: 141 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLAL 200
            + +    T L  AV   +V  VE L     D   +  + G TP+ +A       +   +
Sbjct: 96  NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVI 154

Query: 201 LENRTSVSHEGPNGKT 216
             +   +         
Sbjct: 155 ENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 63.2 bits (155), Expect = 7e-13
 Identities = 14/77 (18%), Positives = 29/77 (37%)

Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
           + ++H+      +D ++   ++  +     +  G TPL  A+       V  LLE     
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62

Query: 208 SHEGPNGKTALHAAAMR 224
                  ++AL  A+  
Sbjct: 63  HILAKERESALSLASTG 79

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 93.3 bits (233), Expect = 2e-22
 Identities = 44/144 (30%), Positives = 62/144 (43%), Gaps = 26/144 (18%)

Query: 88  LLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII 140
           LLL+     N       TPLH+AA+ GH + V  L+E+                A+    
Sbjct: 98  LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK---------------EAS---Q 139

Query: 141 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLAL 200
               K+  T LH A  +  V V E+L + D   P +A   G TPL++A    + ++V  L
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLL 198

Query: 201 LENRTSVSHEGPNGKTALHAAAMR 224
           L    S      NG T LH AA +
Sbjct: 199 LPRGGSPHSPAWNGYTPLHIAAKQ 222

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 92.9 bits (232), Expect = 3e-22
 Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 26/142 (18%)

Query: 88  LLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII 140
           LLL+     NA      TPLHVA    + DIV+ L+ R               G +    
Sbjct: 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR---------------GGS---P 205

Query: 141 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLAL 200
                   T LH A     V+V   L +       + +  G TPL++AA+   + MV  L
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALL 264

Query: 201 LENRTSVSHEGPNGKTALHAAA 222
           L  + + +    +G T LH  A
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVA 286

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 91.8 bits (229), Expect = 6e-22
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 22/136 (16%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
                +   TPLHVA+  GH  IV+ L++R               GA+     ++N +  
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQR---------------GAS---PNVSNVKVE 48

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           T LH A    + +V + L +       +     +TPL+ AA    +NMV  LLEN  + +
Sbjct: 49  TPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107

Query: 209 HEGPNGKTALHAAAMR 224
                G T LH AA  
Sbjct: 108 LATTAGHTPLHIAARE 123

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 91.8 bits (229), Expect = 7e-22
 Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 25/148 (16%)

Query: 82  LEKCPLLLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGA 135
           L     LL +    N  +    TPLH+AA+ GH+++ ++L++                 A
Sbjct: 27  LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN---------------KA 71

Query: 136 AWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSN 195
               +    K+  T LH A    + ++V++L + + + P  A   G TPL++AA      
Sbjct: 72  K---VNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVE 127

Query: 196 MVLALLENRTSVSHEGPNGKTALHAAAM 223
            VLALLE   S +     G T LH AA 
Sbjct: 128 TVLALLEKEASQACMTKKGFTPLHVAAK 155

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 91.0 bits (227), Expect = 1e-21
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 26/142 (18%)

Query: 88  LLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII 140
            LLQ     NA+     TPLH+AA+ GH+++V  L+ +                A     
Sbjct: 230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK---------------QAN---G 271

Query: 141 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLAL 200
            + NK   T LH      +V V ++L K       +    G TPL++A+   +  +V  L
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFL 330

Query: 201 LENRTSVSHEGPNGKTALHAAA 222
           L+++  V+ +   G + LH AA
Sbjct: 331 LQHQADVNAKTKLGYSPLHQAA 352

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 85.2 bits (212), Expect = 1e-19
 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 22/138 (15%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
            N  +    TPLH+ A+ GH  +   L++                G     +  T +   
Sbjct: 271 GNLGNKSGLTPLHLVAQEGHVPVADVLIKH---------------GVM---VDATTRMGY 312

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           T LH A  + N+ +V+ L +   D   +    G +PL+ AA+   +++V  LL+N  S +
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371

Query: 209 HEGPNGKTALHAAAMRSY 226
               +G T L  A    Y
Sbjct: 372 EVSSDGTTPLAIAKRLGY 389

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 82.2 bits (204), Expect = 2e-18
 Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 29/144 (20%)

Query: 88  LLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII 140
           +L++    V+A      TPLHVA+ +G+  +V+FL++                 A    +
Sbjct: 296 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH---------------QAD---V 337

Query: 141 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMV--- 197
               K   + LH+A    + D+V +L K     P   ++ G TPL +A      ++    
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVL 396

Query: 198 LALLENRTSVSHEGPNGKTALHAA 221
             + +  + V     +  +     
Sbjct: 397 KVVTDETSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 60.6 bits (148), Expect = 4e-11
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 27/112 (24%)

Query: 88  LLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII 140
            LLQ    VNAK     +PLH AA+ GH+DIV  L++                GA+    
Sbjct: 329 FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN---------------GAS---P 370

Query: 141 RMTNKEKNTALHEAVCHQNVDVVEILTK--EDPDYPYSANNYGKTPLYMAAE 190
              + +  T L  A     + V ++L    ++  +   ++ +  +      E
Sbjct: 371 NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDE 422

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 88.4 bits (220), Expect = 2e-21
 Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 21/134 (15%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           + A++    TPLHVA     +++VR L +                GA   + +       
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDA---------------GA--DLNKPEPTCGR 193

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           T LH AV  Q   V+E+L K   D P +    G+TPL  A    +  +   L  +     
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

Query: 209 HEGPNGKTALHAAA 222
            +G +  +   ++ 
Sbjct: 253 EDGGDKLSPCSSSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 83.4 bits (207), Expect = 2e-19
 Identities = 27/134 (20%), Positives = 40/134 (29%), Gaps = 19/134 (14%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
                +   T LH+A    H   + FL+                  A  + + + N    
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGF---------------SAGHEYLDLQNDLGQ 46

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           TALH A        VE L          A   G T L++A   R+      LL+ R S  
Sbjct: 47  TALHLAAILGEASTVEKLYAAGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHP 105

Query: 209 HEGPNGKTALHAAA 222
            +  +         
Sbjct: 106 RDASDTYLTQSQDC 119

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 83.0 bits (206), Expect = 3e-19
 Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 32/165 (19%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVER----------AKLTQHENEELESRVGAAWQ 138
           V   +    T LH+A +         L++             LTQ ++   ++    A  
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130

Query: 139 I-------------------IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANN 179
                               +   N + +T LH AV H++ ++V +L     D       
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT 190

Query: 180 YGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMR 224
            G+TPL++A E+++++++  LL+     +     G+T L +A +R
Sbjct: 191 CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR 235

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 70.7 bits (174), Expect = 7e-15
 Identities = 19/123 (15%), Positives = 34/123 (27%), Gaps = 26/123 (21%)

Query: 87  LLLLQ---VNAKDD----TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQI 139
           LL      +N  +     TPLH+A +   + ++  L++                GA    
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA---------------GAD--- 217

Query: 140 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLA 199
                    T L  A+   N  +  +L                +P   +     S+    
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAP-EPEDGGDKLSPCSSSGSDSDSDNRDE 276

Query: 200 LLE 202
             E
Sbjct: 277 GDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 65.6 bits (161), Expect = 4e-13
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 139 IIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPY--SANNYGKTPLYMAAESRSSNM 196
           +     ++ +TALH AV HQ+   ++ L      + Y    N+ G+T L++AA    ++ 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 197 VLALLENRTSVSHEGPNGKTALHAAA 222
           V  L      V      G TALH A 
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLAC 86

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.1 bits (131), Expect = 5e-09
 Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 24/90 (26%)

Query: 87  LLLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII 140
           LLL       A+     TPL  A    +  + R L                  GA     
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH---------------GAP---E 251

Query: 141 RMTNKEKNTALHEAVCHQNVDVVEILTKED 170
                +K +    +    + D  +   + D
Sbjct: 252 PEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 87.1 bits (217), Expect = 4e-21
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 21/137 (15%)

Query: 91  QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
            +   DD     +  A ++G  +  R LVE                G     +R  +KE 
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEA---------------GYD---VRQPDKEN 42

Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
            T LH A  +  +D+V+    +         +   TPL+ A      +MV+ L++     
Sbjct: 43  VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP 102

Query: 208 SHEGPNGKTALHAAAMR 224
           S     G + +H AA  
Sbjct: 103 SLIDGEGCSCIHLAAQF 119

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 82.9 bits (206), Expect = 1e-19
 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 21/138 (15%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           V   D    T LH AA     D+V++ + +               GA   + ++     +
Sbjct: 35  VRQPDKENVTLLHWAAINNRIDLVKYYISK---------------GA--IVDQLGGDLNS 77

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           T LH A    ++ +V  L K   D P   +  G + +++AA+   +++V  L+     V 
Sbjct: 78  TPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136

Query: 209 HEGPNGKTALHAAAMRSY 226
               NG T L  AA R++
Sbjct: 137 MMDQNGMTPLMWAAYRTH 154

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 79.4 bits (197), Expect = 3e-18
 Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 22/137 (16%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
            +  D    + +H+AA+FGH+ IV +L+ +               G     + M ++   
Sbjct: 102 PSLIDGEGCSCIHLAAQFGHTSIVAYLIAK---------------GQ---DVDMMDQNGM 143

Query: 149 TALHEAVCHQN-VDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
           T L  A    + VD   +L   +         +  T L+ A  + ++ ++  LLE   +V
Sbjct: 144 TPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV 203

Query: 208 SHEGPNGKTALHAAAMR 224
             +   G++AL  A  R
Sbjct: 204 DAQNIKGESALDLAKQR 220

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 72.9 bits (180), Expect = 7e-16
 Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 22/117 (18%)

Query: 92  VNAKDD---TPLHVAAKFGHS-DIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
           V+  D    TPL  AA   HS D  R L+                      +       K
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF---------------NV--SVNLGDKYHK 177

Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENR 204
           NTALH AV   N  V+ +L +   +   + N  G++ L +A + ++  M+  L E R
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKNVWMINHLQEAR 233

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 86.8 bits (216), Expect = 1e-20
 Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 30/146 (20%)

Query: 88  LLLQ----VNAKDD--TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIR 141
           LLLQ    V  + D  +P+H AA+ GH + V  L+                 G     I 
Sbjct: 143 LLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAY---------------GGN---ID 184

Query: 142 MTNKEKNTALHEAVCHQNVDVVEILTKE--DPDYPYSANNYGKTPLYMAAESRSSNMVLA 199
                  T L+ A  +Q    V+ L +   D +          +PL+    + S  +   
Sbjct: 185 HKISHLGTPLYLACENQQRACVKKLLESGADVN----QGKGQDSPLHAVVRTASEELACL 240

Query: 200 LLENRTSVSHEGPNGKTALHAAAMRS 225
           L++       +   GK  +      S
Sbjct: 241 LMDFGADTQAKNAEGKRPVELVPPES 266

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 85.6 bits (213), Expect = 2e-20
 Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 33/153 (21%)

Query: 80  EILEKCPLLLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRV 133
             L     L+ Q   VN       +PLH A   GH   V+ L++                
Sbjct: 73  LSLR---NLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH--------------- 114

Query: 134 GAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKE--DPDYPYSANNYGKTPLYMAAES 191
           GA    +     + +T L  A    + D V +L +            +   +P++ AA  
Sbjct: 115 GAQ---VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ----PESDLASPIHEAARR 167

Query: 192 RSSNMVLALLENRTSVSHEGPNGKTALHAAAMR 224
                V +L+    ++ H+  +  T L+ A   
Sbjct: 168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACEN 200

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 84.9 bits (211), Expect = 5e-20
 Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 21/136 (15%)

Query: 90  LQVNAKDD-TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           L  +A  D +P+H AA  GH   +R L+ +               G A   + +   +  
Sbjct: 52  LMGDAVSDWSPMHEAAIHGHQLSLRNLISQ---------------GWA---VNIITADHV 93

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           + LHEA    ++  V+IL K              TPL+ A  S S + V  LL++  SV 
Sbjct: 94  SPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152

Query: 209 HEGPNGKTALHAAAMR 224
            E  +  + +H AA R
Sbjct: 153 PES-DLASPIHEAARR 167

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 54.0 bits (131), Expect = 5e-09
 Identities = 13/124 (10%), Positives = 34/124 (27%), Gaps = 23/124 (18%)

Query: 102 VAAKFGHSDIVRFLVER-AKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNV 160
           + +   H      LV R + +   + ++                 + +            
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQ--------------GGMDGSKPAGPRDFPGIR 46

Query: 161 DVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHA 220
            +   L  +             +P++ AA       +  L+    +V+    +  + LH 
Sbjct: 47  LLSNPLMGDA--------VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHE 98

Query: 221 AAMR 224
           A + 
Sbjct: 99  ACLG 102

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 48.3 bits (116), Expect = 5e-07
 Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 20/75 (26%)

Query: 91  QVNAKDD--TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
            VN      +PLH   +    ++   L++                GA     +  N E  
Sbjct: 215 DVNQGKGQDSPLHAVVRTASEELACLLMDF---------------GAD---TQAKNAEGK 256

Query: 149 TALHEAVCHQNVDVV 163
             +        +  +
Sbjct: 257 RPVELVPPESPLAQL 271

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 84.4 bits (210), Expect = 4e-20
 Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 22/140 (15%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
               D+   TPLH+A   G+   V  LV      Q          G     + + N  + 
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNL--FQQG---------GRE---LDIYNNLRQ 47

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN----R 204
           T LH AV      VV +L       P + + +G+T  ++A E RS   + ALL++     
Sbjct: 48  TPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT 106

Query: 205 TSVSHEGPNGKTALHAAAMR 224
             +     +G TALH A   
Sbjct: 107 LDLEARNYDGLTALHVAVNT 126

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 81.3 bits (202), Expect = 6e-19
 Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 22/151 (14%)

Query: 78  VAEIL-EKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRV 133
               L +      L + A++    T LHVA      + V+ L+ER               
Sbjct: 94  CLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER--------------- 138

Query: 134 GAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRS 193
           GA   I  +  K   + L  AV + ++ +V++L +   +   +    G + L+ A+    
Sbjct: 139 GA--DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGL 195

Query: 194 SNMVLALLENRTSVSHEGPNGKTALHAAAMR 224
             +V  L+ +    S +  +  T L  A  R
Sbjct: 196 LPLVRTLVRSGADSSLKNCHNDTPLMVARSR 226

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 70.2 bits (173), Expect = 7e-15
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 23/116 (19%)

Query: 92  VNAKDD----TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
           ++A D     +PL  A +     +V+ L++                GA    +       
Sbjct: 142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQH---------------GAN---VNAQMYSG 183

Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN 203
           ++ALH A     + +V  L +   D     N +  TPL +A   R  +++      
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 54.0 bits (131), Expect = 4e-09
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 24/86 (27%)

Query: 87  LLLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII 140
           LLL     VNA+     + LH A+  G   +VR LV                 GA     
Sbjct: 168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS---------------GAD---S 209

Query: 141 RMTNKEKNTALHEAVCHQNVDVVEIL 166
            + N   +T L  A   + +D++   
Sbjct: 210 SLKNCHNDTPLMVARSRRVIDILRGK 235

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 85.3 bits (212), Expect = 4e-20
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 20/132 (15%)

Query: 92  VNAKD-DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTA 150
            N  + + PLH AA    + IV+ L+                 G         + + NTA
Sbjct: 57  KNLLENEFPLHQAATLEDTKIVKILLFS---------------GLD---DSQFDDKGNTA 98

Query: 151 LHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHE 210
           L+ AV   N+  V++  K++    +      KT  Y A      ++V   L    S   +
Sbjct: 99  LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-FD 157

Query: 211 GPNGKTALHAAA 222
                + +H   
Sbjct: 158 LAILLSCIHITI 169

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 12/141 (8%), Positives = 38/141 (26%), Gaps = 31/141 (21%)

Query: 88  LLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIR 141
             L             + +H+  K GH D++  L++                        
Sbjct: 147 YFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY---------------MT--STNT 189

Query: 142 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL 201
             +      +  A+ ++++++++ L K D +          +          + +   ++
Sbjct: 190 NNSLLFIPDIKLAIDNKDIEMLQALFKYDIN--------IYSANLENVLLDDAEIAKMII 241

Query: 202 ENRTSVSHEGPNGKTALHAAA 222
           E       +       +    
Sbjct: 242 EKHVEYKSDSYTKDLDIVKNN 262

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 144 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNY-GKTPLYMAAESRSSNMVLALLE 202
           +   ++A + A+   NV +V  L           N    + PL+ AA    + +V  LL 
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLLNAGAL----KNLLENEFPLHQAATLEDTKIVKILLF 83

Query: 203 NRTSVSHEGPNGKTALHAAA 222
           +    S     G TAL+ A 
Sbjct: 84  SGLDDSQFDDKGNTALYYAV 103

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 83.7 bits (208), Expect = 7e-20
 Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 25/138 (18%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           +  KD     PLH +  F   +I  FL+ +                    +    +    
Sbjct: 29  LLQKDQDGRIPLHWSVSFQAHEITSFLLSK---------------MENVNLDDYPDDSGW 73

Query: 149 TALHEAVCHQNVDVVEIL----TKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENR 204
           T  H A    N++VV+ L     K D +      N G T L++A   +   +   L+EN 
Sbjct: 74  TPFHIACSVGNLEVVKSLYDRPLKPDLN---KITNQGVTCLHLAVGKKWFEVSQFLIENG 130

Query: 205 TSVSHEGPNGKTALHAAA 222
            SV  +    +  LH AA
Sbjct: 131 ASVRIKDKFNQIPLHRAA 148

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 80.2 bits (199), Expect = 1e-18
 Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 22/135 (16%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           +N   +   T LH+A      ++ +FL+E                GA+   +R+ +K   
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIEN---------------GAS---VRIKDKFNQ 141

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENR-TSV 207
             LH A    ++ ++E+L           +  G TPL+ A      +  + L+E      
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 201

Query: 208 SHEGPNGKTALHAAA 222
                 G  A   A 
Sbjct: 202 DLVDNKGAKAEDVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 79.8 bits (198), Expect = 2e-18
 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 27/146 (18%)

Query: 87  LLLLQ---VNAKDD------TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAW 137
            LL +   VN  D       TP H+A   G+ ++V+ L +R              +    
Sbjct: 54  FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP-------------LKP-- 98

Query: 138 QIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMV 197
             +     +  T LH AV  +  +V + L +         + + + PL+ AA   S  ++
Sbjct: 99  -DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLI 156

Query: 198 LALLENRTS-VSHEGPNGKTALHAAA 222
             L     S V+ +   G T L  A 
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHAL 182

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 72.1 bits (178), Expect = 1e-15
 Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 21/129 (16%)

Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
            PLH A        V+ L             L S+  +    +   +++    LH +V  
Sbjct: 4   YPLHQACMENEFFKVQEL-------------LHSK-PSL---LLQKDQDGRIPLHWSVSF 46

Query: 158 QNVDVVEILTKE--DPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTS--VSHEGPN 213
           Q  ++   L  +  + +     ++ G TP ++A    +  +V +L +      ++     
Sbjct: 47  QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ 106

Query: 214 GKTALHAAA 222
           G T LH A 
Sbjct: 107 GVTCLHLAV 115

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 68.2 bits (168), Expect = 3e-14
 Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 25/116 (21%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           V  KD     PLH AA  G   ++  L                  G +   +   +K+  
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGL---------------GKS--AVNWQDKQGW 175

Query: 149 TALHEAVCHQNVDVVEIL-TKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN 203
           T L  A+   + D   +L  K   +     +N G     +A       +    L N
Sbjct: 176 TPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALN---EQVKKFFLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 50.9 bits (123), Expect = 4e-08
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 148 NTALHEAVCHQNVD-VVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTS 206
           N  LH+A        V E+L  +        +  G+ PL+ +   ++  +   LL    +
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 207 V---SHEGPNGKTALHAAA 222
           V    +   +G T  H A 
Sbjct: 62  VNLDDYPDDSGWTPFHIAC 80

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 82.5 bits (205), Expect = 7e-20
 Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 19/131 (14%)

Query: 92  VNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTAL 151
           V ++ +TP   AA+      +  L+E                      +   ++   TAL
Sbjct: 40  VVSEYETPWWTAARKADEQALSQLLEDRD-------------------VDAVDENGRTAL 80

Query: 152 HEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEG 211
                  +   V +L +   D  +     G T L+MAA      +V AL+E    +  E 
Sbjct: 81  LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED 140

Query: 212 PNGKTALHAAA 222
             G TAL  A 
Sbjct: 141 ERGLTALELAR 151

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 70.6 bits (174), Expect = 2e-15
 Identities = 31/129 (24%), Positives = 45/129 (34%), Gaps = 24/129 (18%)

Query: 88  LLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIR 141
            LL+   V+A D+   T L   A  G    VR L E                GA   +  
Sbjct: 62  QLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA---------------GA--DLDH 104

Query: 142 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL 201
              +   TALH A  +   +VVE L +   D     +  G T L +A E   +      +
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKTTPKGNPM 163

Query: 202 ENRTSVSHE 210
           +    +  E
Sbjct: 164 QFGRRIGLE 172

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 68.3 bits (168), Expect = 1e-14
 Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 26/136 (19%)

Query: 91  QVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTA 150
           +   +      +  K GHS                         A          E  T 
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYI---------------AAD------VVSEYETP 47

Query: 151 LHEAVCHQNVDVVEILTKE-DPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSH 209
              A    +   +  L ++ D D   + +  G+T L   A   S   V  L E    + H
Sbjct: 48  WWTAARKADEQALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104

Query: 210 EGPN-GKTALHAAAMR 224
                G TALH AA  
Sbjct: 105 RDMRGGLTALHMAAGY 120

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 85.6 bits (213), Expect = 7e-20
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 22/136 (16%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
            +A D    TPLH+AA +    IV+ L++                GA    +   +K   
Sbjct: 51  CHASDGRKSTPLHLAAGYNRVRIVQLLLQH---------------GAD---VHAKDKGGL 92

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
             LH A  + + +V E+L K       + + +  TPL+ AA      +   LL +    +
Sbjct: 93  VPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT 151

Query: 209 HEGPNGKTALHAAAMR 224
               +GK+A+  A   
Sbjct: 152 LVNCHGKSAVDMAPTP 167

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 79.5 bits (197), Expect = 1e-17
 Identities = 31/145 (21%), Positives = 47/145 (32%), Gaps = 28/145 (19%)

Query: 87  LLLLQ---VNAKDD---TPLHVAAKFGHS---DIVRFLVERAKLTQHENEELESRVGAAW 137
             L        +     T LH A    H     +   L+ +               GA  
Sbjct: 196 KTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK---------------GAN- 239

Query: 138 QIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMV 197
             +   NK+  T LH A    + DV+E+L K       + ++ G+T L+ AA +      
Sbjct: 240 --VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTC 296

Query: 198 LALLENRTSVSHEGPNGKTALHAAA 222
             LL   +  S     G TA     
Sbjct: 297 RLLLSYGSDPSIISLQGFTAAQMGN 321

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 78.3 bits (194), Expect = 3e-17
 Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 25/146 (17%)

Query: 84  KCPLLLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAA 136
           K  L L           +     L  AA+ G+ + +  L     LT              
Sbjct: 5   KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMAL-----LTPL---------NVN 50

Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
                 ++  K+T LH A  +  V +V++L +   D  ++ +  G  PL+ A       +
Sbjct: 51  ---CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEV 106

Query: 197 VLALLENRTSVSHEGPNGKTALHAAA 222
              LL++   V+       T LH AA
Sbjct: 107 TELLLKHGACVNAMDLWQFTPLHEAA 132

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 77.5 bits (192), Expect = 6e-17
 Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 19/151 (12%)

Query: 87  LLLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRV------G 134
           LLL         +    + + +A      + + +  +   L Q   E   ++V       
Sbjct: 142 LLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALE 201

Query: 135 AAWQIIRMTNKEKNTALHEAVCH---QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAES 191
                     +   TALH AV     +   V E+L ++  +     N    TPL++AAE 
Sbjct: 202 II---NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAER 257

Query: 192 RSSNMVLALLENRTSVSHEGPNGKTALHAAA 222
             ++++  L ++   ++     G+TALH AA
Sbjct: 258 AHNDVMEVLHKHGAKMNALDSLGQTALHRAA 288

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 76.4 bits (189), Expect = 1e-16
 Identities = 45/207 (21%), Positives = 70/207 (33%), Gaps = 57/207 (27%)

Query: 30  NAAAAGNSEPFKDMAGEEIKSLLTAKTEN--------TILHINIISQERENVSTKFVAEI 81
            AA   +          ++K  L  +  N        T LH  + S   +        ++
Sbjct: 184 QAAREADLA--------KVKKTLALEIINFKQPQSHETALHCAVASLHPKRK------QV 229

Query: 82  LEKCPLLLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGA 135
            E   LLL +   VN K+    TPLHVAA+  H+D++  L +                GA
Sbjct: 230 AE---LLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH---------------GA 271

Query: 136 AWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSN 195
               +   +    TALH A    ++    +L     D P   +  G T   M  E     
Sbjct: 272 K---MNALDSLGQTALHRAALAGHLQTCRLLLSYGSD-PSIISLQGFTAAQMGNE----- 322

Query: 196 MVLALLENRTSVSHEGPNGKTALHAAA 222
            V  +L   T +     +    L  A+
Sbjct: 323 AVQQILSESTPM--RTSDVDYRLLEAS 347

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 72.1 bits (178), Expect = 4e-15
 Identities = 27/138 (19%), Positives = 44/138 (31%), Gaps = 34/138 (24%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VNA D    TPLH AA     ++   L+                 GA      + N    
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSH---------------GAD---PTLVNCHGK 158

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           +A+  A   +  + +    K            G + L  A E+  + +    L       
Sbjct: 159 SAVDMAPTPELRERLTYEFK------------GHSLLQAAREADLAKVKK-TLALEIINF 205

Query: 209 HEGPNGKTALHAAAMRSY 226
            +  + +TALH A    +
Sbjct: 206 KQPQSHETALHCAVASLH 223

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 84.4 bits (210), Expect = 8e-20
 Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 23/154 (14%)

Query: 80  EILEKCPLLLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVER-AKLTQHENEELESR 132
           ++L+   L L +   VN  D    T    AA +G    ++FL +R A +      +    
Sbjct: 86  KLLK---LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK---- 138

Query: 133 VGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESR 192
                +      K   TAL +A    +V+V++IL  E      + +N G+  L  A  S 
Sbjct: 139 -----EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 193

Query: 193 SSNMVLA----LLENRTSVSHEGPNGKTALHAAA 222
             + V A    LL++   V+  G  GKT L  A 
Sbjct: 194 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.4 bits (202), Expect = 9e-19
 Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 18/132 (13%)

Query: 93  NAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALH 152
             +D+  L  A +    D+V+ L+E                GA   +     +   T LH
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEG---------------GA--NVNFQEEEGGWTPLH 44

Query: 153 EAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGP 212
            AV     D+VE+L +   D P      G TP  +AA + S  ++   L     V+    
Sbjct: 45  NAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDF 103

Query: 213 NGKTALHAAAMR 224
            G TA   AA+ 
Sbjct: 104 YGFTAFMEAAVY 115

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 80.2 bits (199), Expect = 3e-18
 Identities = 31/161 (19%), Positives = 50/161 (31%), Gaps = 46/161 (28%)

Query: 87  LLLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII 140
           LLL        +     TP  +AA  G   +++  + +               GA    +
Sbjct: 57  LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK---------------GA---DV 98

Query: 141 RMTNKEKNTALHEAVCHQNVDVVEILTK---------EDPDYPYSANNYGKTPLYMAAES 191
              +    TA  EA  +  V  ++ L K         +  +        G T L  AAE 
Sbjct: 99  NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158

Query: 192 RSSNMVLALLENRTSVSHEGPN-------GKTALHAAAMRS 225
               ++  LL         G +       G+ AL  A + S
Sbjct: 159 GHVEVLKILL------DEMGADVNACDNMGRNALIHALLSS 193

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 72.5 bits (179), Expect = 2e-15
 Identities = 35/170 (20%), Positives = 55/170 (32%), Gaps = 54/170 (31%)

Query: 80  EILEKCPLLLLQ---VNAKDD-------------TPLHVAAKFGHSDIVRFLVERAKLTQ 123
           + L+    L  +   VN +               T L  AA+ GH ++++ L+       
Sbjct: 119 KALK---FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL------- 168

Query: 124 HENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVD----VVEILTKEDPDYPYSANN 179
                    +GA    +   +     AL  A+   +      +  +L     D       
Sbjct: 169 -------DEMGA---DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGE 217

Query: 180 YGKTPLYMAAESRSSNMVLALLENRTSVSHEGPN-------GKTALHAAA 222
            GKTPL +A E +   +V  LL        E          GKTAL  A 
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLL------EQEHIEINDTDSDGKTALLLAV 261

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 64.4 bits (158), Expect = 1e-12
 Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 34/136 (25%)

Query: 80  EILEKCPLLLLQ----VNAKDD---TPLHVAAKFGHSD----IVRFLVERAKLTQHENEE 128
           E+L+   +LL +    VNA D+     L  A           I   L++           
Sbjct: 162 EVLK---ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH---------- 208

Query: 129 LESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEIL-TKEDPDYPYSANNYGKTPLYM 187
                GA    + +  +   T L  AV  +++ +V+ L  +E  +     ++ GKT L +
Sbjct: 209 -----GAD---VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLL 259

Query: 188 AAESRSSNMVLALLEN 203
           A E +   +   L + 
Sbjct: 260 AVELKLKKIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 26/102 (25%)

Query: 71  ENVSTKFVAEILEKCPLLLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQH 124
            +     V  I     LLL     VN + +   TPL +A +  H  +V+ L+        
Sbjct: 191 LSSDDSDVEAITH---LLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL-------- 239

Query: 125 ENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEIL 166
                  +       I  T+ +  TAL  AV  +   + E+L
Sbjct: 240 ------EQEHIE---INDTDSDGKTALLLAVELKLKKIAELL 272

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 84.9 bits (211), Expect = 1e-19
 Identities = 14/133 (10%), Positives = 44/133 (33%), Gaps = 9/133 (6%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VN +D+    PL+++ +     + + L+++  +   +     +  G     +        
Sbjct: 237 VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHN--GTT---VLPDRVVWL 291

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
             +  A      +V+++L ++  +    + N G        +  +  +    L     V 
Sbjct: 292 DFVPAAADPSKQEVLQLLQEKLDE-VVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVR 350

Query: 209 HEGPNGKTALHAA 221
               +   +   +
Sbjct: 351 TRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 81.5 bits (202), Expect = 2e-18
 Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 34/155 (21%)

Query: 88  LLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII 140
           +L+Q      AKD    TPL  A +F + + +  +++                      +
Sbjct: 158 ILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS----------SLR---L 204

Query: 141 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLAL 200
              NK+ N+ LH A+     DV     +   D     +N    PLY++  +    +   L
Sbjct: 205 DYANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKEL 263

Query: 201 LE-------------NRTSVSHEGPNGKTALHAAA 222
           L+             N T+V  +       + AAA
Sbjct: 264 LQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAA 298

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 81.1 bits (201), Expect = 3e-18
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 30/134 (22%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
               DD     +HVAA+ G +D VR L+E                G +     + N+   
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIET---------------GVS---PTIQNRFGC 54

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           TALH A     VD  + L      +   +  +G+ P+++A  +  +++V+AL+       
Sbjct: 55  TALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMANKTDLVVALV------E 105

Query: 209 HEGPNGKTALHAAA 222
                G+       
Sbjct: 106 GAKERGQMPESLLN 119

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 77.2 bits (191), Expect = 7e-17
 Identities = 20/150 (13%), Positives = 39/150 (26%), Gaps = 33/150 (22%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           ++  +    + LH A      D+    VE                G     + M + E  
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAMRFVEM---------------GID---VNMEDNEHT 245

Query: 149 TALHEAVCHQNVDVVEIL--------TKEDPDY----PYSANNYGKTPLYMAAESRSSNM 196
             L+ +V    V + + L         +  P +               +  AA+     +
Sbjct: 246 VPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEV 305

Query: 197 VLALLENRTSVSHEGPNGKTALHAAAMRSY 226
           +  L E    V      G         ++ 
Sbjct: 306 LQLLQEKLDEVVRSLNTGAGGAVKRKKKAA 335

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 70.3 bits (173), Expect = 2e-14
 Identities = 21/144 (14%), Positives = 50/144 (34%), Gaps = 33/144 (22%)

Query: 88  LLLQVNAKDD-TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKE 146
            L++   +    P  +  +    ++                              + + +
Sbjct: 102 ALVEGAKERGQMPESLLNECDEREVNEIGSH------------------------VKHCK 137

Query: 147 KNTALHEAVC--HQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENR 204
             TALH  V    + +++++IL +     P + +   +TPL  A E R+   +  +++  
Sbjct: 138 GQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTV 196

Query: 205 TS-----VSHEGPNGKTALHAAAM 223
            S     + +    G + LH A +
Sbjct: 197 PSKSSLRLDYANKQGNSHLHWAIL 220

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 140 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLA 199
              ++ E    +H A      D V  L +     P   N +G T L++A +    +    
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKY 71

Query: 200 LLENRTSVSHEGPNGKTALHAAAM 223
           L       S    +G+  +H A M
Sbjct: 72  LASVGEVHSLW--HGQKPIHLAVM 93

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 82.5 bits (205), Expect = 1e-19
 Identities = 37/153 (24%), Positives = 56/153 (36%), Gaps = 25/153 (16%)

Query: 79  AEILEKCPLLLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELES 131
            +        + Q     N  D    T LH+AA++  SD  + L+E              
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA------------- 47

Query: 132 RVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAES 191
              A      + +    T LH AV      V +IL +       +  + G TPL +AA  
Sbjct: 48  --SAD---ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 102

Query: 192 RSSNMVLALLENRTSVSHEGPNGKTALHAAAMR 224
               M+  L+ +   V+     GK+ALH AA  
Sbjct: 103 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 135

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 80.1 bits (199), Expect = 1e-18
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 22/136 (16%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           ++A+     TPL +AA+     ++  L+                  A    +   +    
Sbjct: 85  LDARMHDGTTPLILAARLAVEGMLEDLINS---------------HA---DVNAVDDLGK 126

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           +ALH A    NVD   +L K   +     NN  +TPL++AA   S      LL++  +  
Sbjct: 127 SALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 185

Query: 209 HEGPNGKTALHAAAMR 224
                 +     A  R
Sbjct: 186 ITDHMDRLPRDIAQER 201

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 73.6 bits (182), Expect = 4e-16
 Identities = 30/146 (20%), Positives = 48/146 (32%), Gaps = 35/146 (23%)

Query: 80  EILEKCPLLLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRV 133
            +LE    L+     VNA DD   + LH AA   + D    L++                
Sbjct: 106 GMLE---DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--------------- 147

Query: 134 GAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRS 193
           GA      M N  + T L  A    + +  ++L     +     ++  + P  +A E   
Sbjct: 148 GAN---KDMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMH 203

Query: 194 SNMVLALLENRTSVSHEGPNGKTALH 219
            ++V  L E               LH
Sbjct: 204 HDIVRLLDEY-------NLVRSPQLH 222

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 79.7 bits (198), Expect = 1e-19
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 19/131 (14%)

Query: 92  VNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTAL 151
           + +  D     A K G  D V+  V +               G     +  T +     L
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAK---------------GED---VNRTLEGGRKPL 44

Query: 152 HEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEG 211
           H A     ++++E L  +  D   + + +  TPL  A      + V  LL      + +G
Sbjct: 45  HYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103

Query: 212 PNGKTALHAAA 222
           P+G TA  A  
Sbjct: 104 PDGLTAFEATD 114

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 69.0 bits (170), Expect = 2e-15
 Identities = 28/114 (24%), Positives = 39/114 (34%), Gaps = 26/114 (22%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VN   +    PLH AA  G  +I+ FL+                 GA    I   +K   
Sbjct: 33  VNRTLEGGRKPLHYAADCGQLEILEFLLL---------------KGAD---INAPDKHHI 74

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE 202
           T L  AV   +V  V++L  +  D        G T             + ALL+
Sbjct: 75  TPLLSAVYEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATDN----QAIKALLQ 123

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 82.8 bits (206), Expect = 2e-19
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 22/136 (16%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VN +DD   TP+  A ++ H D+V+ L+ +               G+    I + + E+N
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSK---------------GSD---INIRDNEEN 145

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
             LH A     VD+ EIL     D  ++ N +G +PL++AA     + V+  L   + V+
Sbjct: 146 ICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT 204

Query: 209 HEGPNGKTALHAAAMR 224
            +   G+T L  A++ 
Sbjct: 205 LKNKEGETPLQCASLN 220

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 82.1 bits (204), Expect = 3e-19
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 21/134 (15%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           ++   +   TPL  AA+  H + V++L++                GA    +   + E +
Sbjct: 37  IDTCSEDQRTPLMEAAENNHLEAVKYLIKA---------------GAL---VDPKDAEGS 78

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           T LH A    + +VV+ L           ++ G TP+  A E +  ++V  LL   + ++
Sbjct: 79  TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN 138

Query: 209 HEGPNGKTALHAAA 222
                    LH AA
Sbjct: 139 IRDNEENICLHWAA 152

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 82.1 bits (204), Expect = 3e-19
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 21/134 (15%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           V+ KD    T LH+AAK GH ++V++L+                 G     +   +    
Sbjct: 70  VDPKDAEGSTCLHLAAKKGHYEVVQYLLSN---------------GQM--DVNCQDDGGW 112

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           T +  A  +++VD+V++L  +  D     +N     L+ AA S   ++   LL  +  + 
Sbjct: 113 TPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH 171

Query: 209 HEGPNGKTALHAAA 222
               +G + LH AA
Sbjct: 172 AVNIHGDSPLHIAA 185

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 82.1 bits (204), Expect = 3e-19
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 23/135 (17%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
              +     +PLH AA+ GH DI   LV+                GA    I   ++++ 
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQA---------------GAN---IDTCSEDQR 45

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN-RTSV 207
           T L EA  + +++ V+ L K         +  G T L++AA+     +V  LL N +  V
Sbjct: 46  TPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104

Query: 208 SHEGPNGKTALHAAA 222
           + +   G T +  A 
Sbjct: 105 NCQDDGGWTPMIWAT 119

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.1 bits (173), Expect = 8e-15
 Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 22/115 (19%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           +N +D+     LH AA  G  DI   L+                       +   N   +
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAA---------------KCD---LHAVNIHGD 178

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN 203
           + LH A      D V +    D D     N  G+TPL  A+ +      L + + 
Sbjct: 179 SPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLNSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 55.1 bits (134), Expect = 1e-09
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 21/84 (25%)

Query: 92  VNAKD---DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           ++A +   D+PLH+AA+    D V   + R                +    + + NKE  
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSR---------------DSD---VTLKNKEGE 211

Query: 149 TALHEAVCHQNVDVVEILTKEDPD 172
           T L  A  +  V     ++K   D
Sbjct: 212 TPLQCASLNSQVWSALQMSKALQD 235

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 82.3 bits (204), Expect = 2e-19
 Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 21/136 (15%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VN  D    T L+ A   GH DIV  L               ++       +   NK  +
Sbjct: 99  VNGLDKAGSTALYWACHGGHKDIVEMLF--------------TQPNIE---LNQQNKLGD 141

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           TALH A      D+V++L  +        N   K    MA  +  ++++          +
Sbjct: 142 TALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT 200

Query: 209 HEGPNGKTALHAAAMR 224
                       + + 
Sbjct: 201 LSNAEDYLDDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 25/156 (16%), Positives = 40/156 (25%), Gaps = 44/156 (28%)

Query: 83  EKCPLLLLQ----VNAKD---DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGA 135
            + P  L      +       DT        G + ++       +               
Sbjct: 25  PRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ--------------- 69

Query: 136 AWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSN 195
                    +  +  LHEA    N+  +              +  G T LY A      +
Sbjct: 70  --------AESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKD 120

Query: 196 MVLALLENRTSVSHEGPN-------GKTALHAAAMR 224
           +V  L       +            G TALHAAA +
Sbjct: 121 IVEMLF------TQPNIELNQQNKLGDTALHAAAWK 150

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 17/126 (13%), Positives = 31/126 (24%), Gaps = 24/126 (19%)

Query: 97  DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC 156
              +  A           L                        I       +T   +   
Sbjct: 13  QVKVFRALYTFEPRTPDELYIE---------------EGD---IIYITDMSDTNWWKGTS 54

Query: 157 HQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKT 216
                ++      +             PL+ AA+  + + +   L+NR  V+     G T
Sbjct: 55  KGRTGLIPSNYVAE------QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGST 108

Query: 217 ALHAAA 222
           AL+ A 
Sbjct: 109 ALYWAC 114

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.0 bits (115), Expect = 4e-07
 Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 6/82 (7%)

Query: 143 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE 202
             K     +  A+        + L  E+ D      +   T  +       + ++ +   
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTSKGRTGLIPSNYV 66

Query: 203 NRTSVSHEGPNGKTALHAAAMR 224
              +      +    LH AA R
Sbjct: 67  AEQAE-----SIDNPLHEAAKR 83

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 5/51 (9%), Positives = 12/51 (23%)

Query: 174 PYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMR 224
           P      G+  ++ A  +        L      + +      T       +
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK 55

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 82.3 bits (204), Expect = 2e-19
 Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 19/131 (14%)

Query: 92  VNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTAL 151
           V ++ +TP   AA+      +  L+E                      +   ++   TAL
Sbjct: 41  VVSEYETPWWTAARKADEQALSQLLEDRD-------------------VDAVDENGRTAL 81

Query: 152 HEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEG 211
                  +   V +L +   D  +     G T L+MAA      +V AL+E    +  E 
Sbjct: 82  LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED 141

Query: 212 PNGKTALHAAA 222
             G TAL  A 
Sbjct: 142 ERGLTALELAR 152

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 65.7 bits (161), Expect = 3e-13
 Identities = 27/136 (19%), Positives = 39/136 (28%), Gaps = 26/136 (19%)

Query: 91  QVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTA 150
           +   +      +  K GHS                         A          E  T 
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSYI---------------AAD------VVSEYETP 48

Query: 151 LHEAVCHQNVDVVEILTKE-DPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSH 209
              A    +   +  L ++ D D   + +  G+T L   A   S   V  L E    + H
Sbjct: 49  WWTAARKADEQALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105

Query: 210 -EGPNGKTALHAAAMR 224
            +   G TALH AA  
Sbjct: 106 RDMRGGLTALHMAAGY 121

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 61.8 bits (151), Expect = 7e-12
 Identities = 17/136 (12%), Positives = 35/136 (25%), Gaps = 35/136 (25%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           +  +D+   T L +A +   +      ++                       R    EK 
Sbjct: 137 IEVEDERGLTALELAREILKTTPKGNPMQFG---------------------RRIGLEKV 175

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
             + E    +  +V EI+ K            GK   Y+       +       +     
Sbjct: 176 INVLEGQVFEYAEVDEIVEK---------RGKGKDVEYLVRWKDGGDCEWVKGVHVAEDV 226

Query: 209 HEGPNGKTALHAAAMR 224
            +  + +  L  A   
Sbjct: 227 AK--DYEDGLEYAVAE 240

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 81.0 bits (201), Expect = 3e-19
 Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 25/143 (17%)

Query: 92  VNAKD---DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           +N ++   D+P   A   G ++I+ ++++                      +   N+   
Sbjct: 65  INLQNSISDSPYLYAGAQGRTEILAYMLK---------------HATP--DLNKHNRYGG 107

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSN-----MVLALLEN 203
            AL  A    ++D V++L ++  +     N++G T L  A   R  N     +V  L+EN
Sbjct: 108 NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN 167

Query: 204 RTSVSHEGPNGKTALHAAAMRSY 226
               S +  +G+TA+  A  + Y
Sbjct: 168 GADQSIKDNSGRTAMDYANQKGY 190

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 78.6 bits (195), Expect = 3e-18
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 22/136 (16%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           V+  D    TPL++A      +I + L++R               GA    I + N   +
Sbjct: 32  VDEVDTEGNTPLNIAVHNNDIEIAKALIDR---------------GA---DINLQNSISD 73

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN-RTSV 207
           +    A      +++  + K         N YG   L  AAE    + V  LLE+ R  +
Sbjct: 74  SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI 133

Query: 208 SHEGPNGKTALHAAAM 223
             +   G TAL  A  
Sbjct: 134 DFQNDFGYTALIEAVG 149

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 70.2 bits (173), Expect = 3e-15
 Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 20/128 (15%)

Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
             L  A +     +   L +                      +   + E NT L+ AV +
Sbjct: 8   ALLEAANQRDTKKVKEILQDT---------------TYQ---VDEVDTEGNTPLNIAVHN 49

Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTS-VSHEGPNGKT 216
            ++++ + L     D     N+   +P   A     + ++  +L++ T  ++     G  
Sbjct: 50  NDIEIAKALIDRGAD-INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGN 108

Query: 217 ALHAAAMR 224
           AL  AA +
Sbjct: 109 ALIPAAEK 116

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 64.8 bits (159), Expect = 4e-13
 Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 33/135 (24%)

Query: 80  EILEKCPLLLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESR 132
           EIL     +L      +N  +      L  AA+ GH D V+ L+E               
Sbjct: 86  EILA---YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED-------------- 128

Query: 133 VGAAWQIIRMTNKEKNTALHEAVCHQN-----VDVVEILTKEDPDYPYSANNYGKTPLYM 187
            G     I   N    TAL EAV  +       D+V++L +   D     +N G+T +  
Sbjct: 129 -GRE--DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDY 184

Query: 188 AAESRSSNMVLALLE 202
           A +   + +   L +
Sbjct: 185 ANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 57.5 bits (140), Expect = 2e-10
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 1/83 (1%)

Query: 142 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL 201
           M   E    L  A       V EIL           +  G TPL +A  +    +  AL+
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 202 ENRTSVSHEGPNGKTALHAAAMR 224
           +    ++ +     +    A  +
Sbjct: 60  DRGADINLQNSISDSPYLYAGAQ 82

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 13/66 (19%)

Query: 58  NTILHINIISQERENVSTKFVAEILEKCPLLLLQ---VNAKDD---TPLHVAAKFGHSDI 111
            T L   +  +E   +      +I++   LL+      + KD+   T +  A + G+++I
Sbjct: 141 YTALIEAVGLREGNQLYQ----DIVK---LLMENGADQSIKDNSGRTAMDYANQKGYTEI 193

Query: 112 VRFLVE 117
            + L +
Sbjct: 194 SKILAQ 199

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 82.1 bits (204), Expect = 3e-19
 Identities = 40/184 (21%), Positives = 65/184 (35%), Gaps = 34/184 (18%)

Query: 54  AKTEN--TILHI----NIISQERENVSTKFVAEILEKCPLLLLQ----VNAKDD---TPL 100
            +  +  T L I        +   +   +    ++      + Q     N  D    T L
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVIS---DFIYQGASLHNQTDRTGETAL 61

Query: 101 HVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNV 160
           H+AA++  SD  + L+E                 A      + +    T LH AV     
Sbjct: 62  HLAARYSRSDAAKRLLEA---------------SAD---ANIQDNMGRTPLHAAVSADAQ 103

Query: 161 DVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHA 220
            V +IL +       +  + G TPL +AA      M+  L+ +   V+     GK+ALH 
Sbjct: 104 GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 163

Query: 221 AAMR 224
           AA  
Sbjct: 164 AAAV 167

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 79.0 bits (196), Expect = 5e-18
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 22/136 (16%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           ++A+     TPL +AA+     ++  L+                  A    +   +    
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINS---------------HAD---VNAVDDLGK 158

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           +ALH A    NVD   +L K   +     NN  +TPL++AA   S      LL++  +  
Sbjct: 159 SALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 217

Query: 209 HEGPNGKTALHAAAMR 224
                 +     A  R
Sbjct: 218 ITDHMDRLPRDIAQER 233

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 69.0 bits (170), Expect = 2e-14
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 22/115 (19%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VNA DD   + LH AA   + D    L++                GA      M N  + 
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKN---------------GAN---KDMQNNREE 191

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN 203
           T L  A    + +  ++L     +     ++  + P  +A E    ++V  L   
Sbjct: 192 TPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 57.1 bits (139), Expect = 4e-10
 Identities = 23/134 (17%), Positives = 37/134 (27%), Gaps = 41/134 (30%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VN +     TPL +A+  G                                         
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGL-------------------------------------- 24

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
              +         V+     +        +  G+T L++AA    S+    LLE     +
Sbjct: 25  ETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN 84

Query: 209 HEGPNGKTALHAAA 222
            +   G+T LHAA 
Sbjct: 85  IQDNMGRTPLHAAV 98

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 6/37 (16%)

Query: 87  LLLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVE 117
           +LL      +  D     P  +A +  H DIVR L  
Sbjct: 208 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDL 244

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 79.7 bits (198), Expect = 5e-19
 Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 18/133 (13%)

Query: 92  VNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTAL 151
            N++ D  L  AAK G  + V+ L                   +     R     ++T L
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTV---------------QSV--NCRDIEGRQSTPL 46

Query: 152 HEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEG 211
           H A  +  V VVE L +   D  ++ +  G  PL+ A       +   L+++   V+   
Sbjct: 47  HFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 105

Query: 212 PNGKTALHAAAMR 224
               T LH AA +
Sbjct: 106 LWKFTPLHEAAAK 118

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 75.9 bits (188), Expect = 1e-17
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 22/134 (16%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
               +    TPLH AA +    +V +L++                GA    +   +K   
Sbjct: 35  CRDIEGRQSTPLHFAAGYNRVSVVEYLLQH---------------GAD---VHAKDKGGL 76

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
             LH A  + + +V E+L K        A+ +  TPL+ AA      +   LL++    +
Sbjct: 77  VPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT 135

Query: 209 HEGPNGKTALHAAA 222
            +  +G T L    
Sbjct: 136 KKNRDGNTPLDLVK 149

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 65.9 bits (162), Expect = 8e-14
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 22/102 (21%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           V+AKD     PLH A  +GH ++   LV+                GA    + + +  K 
Sbjct: 68  VHAKDKGGLVPLHNACSYGHYEVAELLVKH---------------GAV---VNVADLWKF 109

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAE 190
           T LHEA      ++ ++L +   D P   N  G TPL +  +
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD 150

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 48.5 bits (117), Expect = 2e-07
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 22/78 (28%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VN  D    TPLH AA  G  +I + L++                GA        N++ N
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLLQH---------------GAD---PTKKNRDGN 142

Query: 149 TALHEAVCHQNVDVVEIL 166
           T L       + D+ ++L
Sbjct: 143 TPLDLV-KDGDTDIQDLL 159

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 79.4 bits (197), Expect = 6e-19
 Identities = 26/148 (17%), Positives = 56/148 (37%), Gaps = 27/148 (18%)

Query: 78  VAEILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVG 134
           V  +L +  +     +A +    T L V   FG + I   L+++               G
Sbjct: 18  VRRLLHRELV---HPDALNRFGKTALQVMM-FGSTAIALELLKQ---------------G 58

Query: 135 AAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSS 194
           A+     + +    + +H+A     +D +++L +   D     +  G  P+++A +   +
Sbjct: 59  AS---PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHT 114

Query: 195 NMVLALLENRTSVSHEGPNGKTALHAAA 222
            +V + L   + +      G T L  A 
Sbjct: 115 AVV-SFLAAESDLHRRDARGLTPLELAL 141

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 74.4 bits (184), Expect = 4e-17
 Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 19/129 (14%)

Query: 95  KDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEA 154
           +    L  AA  G    VR L     L +                    N+   TAL   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRL-----LHRE---------LVH---PDALNRFGKTALQVM 43

Query: 155 VCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNG 214
               +  +   L K+    P   +  G +P++ AA +   + +  L+E+   V+     G
Sbjct: 44  -MFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTG 101

Query: 215 KTALHAAAM 223
              +H A  
Sbjct: 102 ALPIHLAVQ 110

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 71.7 bits (177), Expect = 4e-16
 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 28/123 (22%)

Query: 87  LLLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII 140
            LL Q    N +D    +P+H AA+ G  D ++ LVE                GA    +
Sbjct: 53  ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH---------------GAD---V 94

Query: 141 RMTNKEKNTALHEAVCHQNVDVVEILTKE-DPDYPYSANNYGKTPLYMAAESRSSNMVLA 199
            + +      +H AV   +  VV  L  E D       +  G TPL +A +  + ++V  
Sbjct: 95  NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH---RRDARGLTPLELALQRGAQDLVDI 151

Query: 200 LLE 202
           L  
Sbjct: 152 LQG 154

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 81.1 bits (201), Expect = 6e-19
 Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 30/148 (20%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVER-AKLTQHENEELESRVGAAWQIIRMTNKEK 147
           V+ +     T LH+AA + + +    L+E   +L                        E 
Sbjct: 30  VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTS--------------ELYEG 75

Query: 148 NTALHEAVCHQNVDVVEIL------------TKEDPDYPYSANNYGKTPLYMAAESRSSN 195
            TALH AV +QNV++V  L                   P++   YG+ PL  AA   S  
Sbjct: 76  QTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEE 135

Query: 196 MVLALLENRTSVSHEGPNGKTALHAAAM 223
           +V  L+E+   +  +   G T LH   +
Sbjct: 136 IVRLLIEHGADIRAQDSLGNTVLHILIL 163

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 73.4 bits (181), Expect = 4e-16
 Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 21/150 (14%)

Query: 87  LLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVER-AKLTQHENEELESRVGAAWQIIRM 142
           L+   + ++     T LH+A    + ++VR L+ R A +    +    +           
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV----SA--RATGSVFHYRPHN 116

Query: 143 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE 202
                   L  A C  + ++V +L +   D   + ++ G T L++     +      +  
Sbjct: 117 LIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMYN 175

Query: 203 ----------NRTSVSHEGPNGKTALHAAA 222
                      ++        G T    A 
Sbjct: 176 LLLSYDGGDHLKSLELVPNNQGLTPFKLAG 205

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 71.1 bits (175), Expect = 3e-15
 Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 34/143 (23%)

Query: 97  DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC 156
           ++PL +AAK      +  L     L            G     +        TALH A  
Sbjct: 4   ESPLLLAAKENDVQALSKL-----LKFE---------GCE---VHQRGAMGETALHIAAL 46

Query: 157 HQNVDVVEILTKEDPD----YPYSANNYGKTPLYMAAESRSSNMVLALLEN--------- 203
           + N++   +L +  P+       S    G+T L++A  +++ N+V ALL           
Sbjct: 47  YDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARAT 106

Query: 204 ----RTSVSHEGPNGKTALHAAA 222
                    +    G+  L  AA
Sbjct: 107 GSVFHYRPHNLIYYGEHPLSFAA 129

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 7/81 (8%)

Query: 149 TALHEAVCHQNVDVV-EILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
           + L  A    +V  + ++L  E  +  +     G+T L++AA   +    + L+E    +
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63

Query: 208 SHEGPN-----GKTALHAAAM 223
             E        G+TALH A +
Sbjct: 64  VFEPMTSELYEGQTALHIAVI 84

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 79.3 bits (197), Expect = 7e-19
 Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 22/136 (16%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VNA+D    TPLH+AA  GH +IV  L++                GA    +   +    
Sbjct: 40  VNAEDASGWTPLHLAAFNGHLEIVEVLLKN---------------GAD---VNAVDHAGM 81

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           T L  A    ++++VE+L K   D   + +  G TPL++AA      +V  LL+N   V+
Sbjct: 82  TPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140

Query: 209 HEGPNGKTALHAAAMR 224
            +   GKTA   +   
Sbjct: 141 AQDKFGKTAFDISIDN 156

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 77.4 bits (192), Expect = 4e-18
 Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 19/132 (14%)

Query: 93  NAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALH 152
            +     L  AA+ G  D VR L+                 GA    +   +    T LH
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMA---------------NGAD---VNAEDASGWTPLH 52

Query: 153 EAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGP 212
            A  + ++++VE+L K   D   + ++ G TPL +AA      +V  LL+N   V+    
Sbjct: 53  LAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDM 111

Query: 213 NGKTALHAAAMR 224
            G T LH AAM 
Sbjct: 112 EGHTPLHLAAMF 123

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 68.5 bits (169), Expect = 8e-15
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 22/114 (19%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VNA D    TPL +AA FGH +IV  L++                GA    +   + E +
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVLLKN---------------GA---DVNANDMEGH 114

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE 202
           T LH A    ++++VE+L K   D   + + +GKT   ++ ++ + ++   L +
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 78.2 bits (194), Expect = 1e-18
 Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 21/133 (15%)

Query: 92  VNAKDD--TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNT 149
                   T LH+A+  G    V +L++                G+      + +    T
Sbjct: 4   PFTNHRGETLLHIASIKGDIPSVEYLLQN---------------GSD---PNVKDHAGWT 45

Query: 150 ALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSH 209
            LHEA  H ++ VVE+L +       +      +PL+ AA++   ++V  LL    S + 
Sbjct: 46  PLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104

Query: 210 EGPNGKTALHAAA 222
               G   +    
Sbjct: 105 VNIFGLRPVDYTD 117

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 74.4 bits (184), Expect = 3e-17
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 26/123 (21%)

Query: 88  LLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII 140
            LLQ     N KD    TPLH A   GH  +V  L++                 A    +
Sbjct: 28  YLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH---------------KAL---V 69

Query: 141 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLAL 200
             T  + ++ LH+A  + +VD+V++L         + N +G  P+    +    +++L  
Sbjct: 70  NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLP 128

Query: 201 LEN 203
            +N
Sbjct: 129 EKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 58.6 bits (143), Expect = 2e-11
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 143 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE 202
           TN    T LH A    ++  VE L +   D P   ++ G TPL+ A       +V  LL+
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 203 NRTSVSHEGPNGKTALHAAAM 223
           ++  V+  G    + LH AA 
Sbjct: 65  HKALVNTTGYQNDSPLHDAAK 85

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 79.0 bits (196), Expect = 1e-18
 Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 18/126 (14%)

Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
             +    + G++  VR  ++                      +   +    + LH A   
Sbjct: 7   DDIFTQCREGNAVAVRLWLDN---------------TEN--DLNQGDDHGFSPLHWACRE 49

Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA 217
               VVE+L           N    TPL++AA     ++V  LL+ +  ++    +G   
Sbjct: 50  GRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVP 108

Query: 218 LHAAAM 223
           LH A  
Sbjct: 109 LHYACF 114

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 73.2 bits (181), Expect = 2e-16
 Identities = 29/115 (25%), Positives = 40/115 (34%), Gaps = 22/115 (19%)

Query: 92  VNAKD---DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           +N  +   DTPLH+AA  GH DIV+ L++                 A    I   N+  N
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLLQY---------------KAD---INAVNEHGN 106

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN 203
             LH A       V E L           N YG+ P+  A       +     + 
Sbjct: 107 VPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 56.7 bits (138), Expect = 2e-10
 Identities = 15/79 (18%), Positives = 28/79 (35%)

Query: 144 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN 203
           + E    +       N   V +      +     +++G +PL+ A     S +V  L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 204 RTSVSHEGPNGKTALHAAA 222
              ++       T LH AA
Sbjct: 62  GARINVMNRGDDTPLHLAA 80

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 38.2 bits (90), Expect = 7e-04
 Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 177 ANNYGKTPLYMAAESRSSNMVLALLENR-TSVSHEGPNGKTALHAAA 222
            +      ++      ++  V   L+N    ++    +G + LH A 
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWAC 47

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 76.6 bits (190), Expect = 3e-18
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 23/127 (18%)

Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
           TPLH+AA+ GH ++V+ L+E                GA    +   +K   T LH A  +
Sbjct: 4   TPLHLAARNGHLEVVKLLLEA---------------GAD---VNAKDKNGRTPLHLAARN 45

Query: 158 QNVDVVEILTKE--DPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGK 215
            +++VV++L +   D +   + +  G+TPL++AA +    +V  LLE    V+ +  NG+
Sbjct: 46  GHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR 102

Query: 216 TALHAAA 222
           T LH AA
Sbjct: 103 TPLHLAA 109

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 67.8 bits (167), Expect = 7e-15
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 22/115 (19%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VNAKD    TPLH+AA+ GH ++V+ L+E                GA    +   +K   
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEA---------------GAD---VNAKDKNGR 69

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN 203
           T LH A  + +++VV++L +   D   + +  G+TPL++AA +    +V  LLE 
Sbjct: 70  TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 53.5 bits (130), Expect = 1e-09
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
            T LH A  + +++VV++L +   D   + +  G+TPL++AA +    +V  LLE    V
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 208 SHEGPNGKTALHAAAMR 224
           + +  NG+T LH AA  
Sbjct: 62  NAKDKNGRTPLHLAARN 78

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 38.1 bits (90), Expect = 4e-04
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 181 GKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA 222
           G+TPL++AA +    +V  LLE    V+ +  NG+T LH AA
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 43

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 76.7 bits (190), Expect = 3e-18
 Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 28/137 (20%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           ++         L  AA  G  + VR L+E                GA        N+   
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEA---------------GAD---PNALNRFGR 46

Query: 149 TALHEAVCHQNVDVVEILTKE--DPDYPYSANNYGKT-PLYMAAESRSSNMVLALLENRT 205
             +       +  V E+L     +P+    A+    T P++ AA     + ++ L     
Sbjct: 47  RPIQVM-MMGSAQVAELLLLHGAEPN---CADPATLTRPVHDAAREGFLDTLVVLHRAGA 102

Query: 206 SVSHEGPNGKTALHAAA 222
            +      G+  +  A 
Sbjct: 103 RLDVCDAWGRLPVDLAE 119

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 65.5 bits (161), Expect = 5e-14
 Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 24/117 (20%)

Query: 91  QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
             NA +     P+ V    G + +   L+                 GA        +   
Sbjct: 37  DPNALNRFGRRPIQVMMM-GSAQVAELLLLH---------------GAE---PNCADPAT 77

Query: 148 NT-ALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN 203
            T  +H+A     +D + +L +         + +G+ P+ +A E    ++   L   
Sbjct: 78  LTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 45.1 bits (108), Expect = 2e-06
 Identities = 9/47 (19%), Positives = 12/47 (25%)

Query: 177 ANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAM 223
                   L  AA       V  LLE     +     G+  +    M
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM 54

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 80.4 bits (199), Expect = 6e-18
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 19/149 (12%)

Query: 82  LEKCPLLLLQ---VNAKDD--TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAA 136
                 +  +   +       T LH  A    ++    L+       HE +E  +  GA 
Sbjct: 106 YAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIV------HEAKECIAA-GAD 158

Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
              +   + ++NT L  AV  +   +V  L K   D P   N   ++ L+ AA +R   M
Sbjct: 159 ---VNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGM 214

Query: 197 VLALLENRTS---VSHEGPNGKTALHAAA 222
           ++ +L +      +     NG TAL   A
Sbjct: 215 MVYMLNSTKLKGDIEELDRNGMTALMIVA 243

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 76.1 bits (188), Expect = 2e-16
 Identities = 34/154 (22%), Positives = 54/154 (35%), Gaps = 18/154 (11%)

Query: 78  VAEILEKCPLLLLQVNAKDD---TPLHVAAKFGHSD---IVRFLVER-AKLTQHENEELE 130
           +   +     L   +   D    T L + A     D     + LVE+ AK+        +
Sbjct: 214 MMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD 273

Query: 131 SRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAE 190
           S              +  TALH A    N+ +V+ L  E        +  GKTP+ +AA+
Sbjct: 274 SE-----------KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ 322

Query: 191 SRSSNMVLALLENRTSVSHEGPNGKTALHAAAMR 224
                +V+ L++   SV        TA   A   
Sbjct: 323 EGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN 356

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 74.6 bits (184), Expect = 7e-16
 Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 40/151 (26%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VNA D    TPL +A       +V +L++                GA      + NK + 
Sbjct: 159 VNAMDCDENTPLMLAVLARRRRLVAYLMKA---------------GA---DPTIYNKSER 200

Query: 149 TALHEAVCHQNVDVVEIL-----TKEDPDYPYSANNYGKTPLYMAAESRSSNMVLA---L 200
           +ALH+A  +++  ++  +      K D +     +  G T L + A +   + V +   L
Sbjct: 201 SALHQAAANRDFGMMVYMLNSTKLKGDIE---ELDRNGMTALMIVAHNEGRDQVASAKLL 257

Query: 201 LENRTSVSHEGP--------NGKTALHAAAM 223
           +E    V ++G          G+TALH AA 
Sbjct: 258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQ 288

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 20/142 (14%), Positives = 36/142 (25%), Gaps = 32/142 (22%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
            N        P       G+  +  F                        I      E  
Sbjct: 54  RNELQHYSLYPNPQGYGNGNDFLGDFNHTN---------------LQ---IPTEPEPESP 95

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTS-- 206
             LH      +  + E +T+E  +       + +T L+  A + S+     L+ +     
Sbjct: 96  IKLHTE-AAGSYAITEPITRESVN--IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 152

Query: 207 ------VSHEGPNGKTALHAAA 222
                 V+    +  T L  A 
Sbjct: 153 IAAGADVNAMDCDENTPLMLAV 174

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 18/125 (14%)

Query: 79  AEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQ 138
           A++             K  T LH AA+  +  IV++LV                 G+   
Sbjct: 262 AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV--------------GEKGSN-- 305

Query: 139 IIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVL 198
                +++  T +  A     ++VV  L ++      + +    T   +A  +   N+V 
Sbjct: 306 -KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVD 363

Query: 199 ALLEN 203
                
Sbjct: 364 IFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 17/93 (18%), Positives = 41/93 (44%), Gaps = 25/93 (26%)

Query: 87  LLLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQI 139
            L+ +     + +D+   TP+ +AA+ G  ++V +L++                GA+   
Sbjct: 297 YLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ---------------QGAS--- 338

Query: 140 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD 172
           +   +   +TA   A  + + ++V+I  +  P+
Sbjct: 339 VEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 15/134 (11%), Positives = 29/134 (21%), Gaps = 30/134 (22%)

Query: 91  QVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTA 150
           Q        L  A+  G+                 NE                       
Sbjct: 32  QSITSSQHSLLEASYDGYIKRQ------------RNEL---------------QHYSLYP 64

Query: 151 LHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHE 210
             +   + N  + +         P          L+  A   S  +   +     ++  +
Sbjct: 65  NPQGYGNGNDFLGDFNHTNLQI-PTEPEPESPIKLHTEAAG-SYAITEPITRESVNII-D 121

Query: 211 GPNGKTALHAAAMR 224
             + +T LH  A  
Sbjct: 122 PRHNRTVLHWIASN 135

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 75.5 bits (187), Expect = 1e-17
 Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 21/133 (15%)

Query: 92  VNAKDD--TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNT 149
                   +PLH+AA++GH      L+                 G          K   T
Sbjct: 28  FTTDWLGTSPLHLAAQYGHFSTTEVLLRA---------------GV---SRDARTKVDRT 69

Query: 150 ALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSH 209
            LH A    + ++VE+L K   D   + +    T L+ A E     +V  L++    V  
Sbjct: 70  PLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128

Query: 210 EGPNGKTALHAAA 222
           +    KTA   + 
Sbjct: 129 QSKFCKTAFDISI 141

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 74.0 bits (183), Expect = 6e-17
 Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 24/129 (18%)

Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN--TALHEAV 155
             L  AA+ G  D VR L+                 GA          +    + LH A 
Sbjct: 4   KKLLEAARAGQDDEVRILMAN---------------GA--PF----TTDWLGTSPLHLAA 42

Query: 156 CHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGK 215
            + +    E+L +       +     +TPL+MAA    +N+V  LL++   V+ +     
Sbjct: 43  QYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM 101

Query: 216 TALHAAAMR 224
           TALH A   
Sbjct: 102 TALHWATEH 110

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 69.0 bits (170), Expect = 4e-15
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 22/109 (20%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
            +A+     TPLH+AA  GH++IV  L++                GA    +   +  K 
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKH---------------GA---DVNAKDMLKM 101

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMV 197
           TALH A  H + +VVE+L K   D  ++ + + KT   ++ ++ + ++ 
Sbjct: 102 TALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 55.5 bits (135), Expect = 4e-10
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
              L EA      D V IL        ++ +  G +PL++AA+    +    LL    S 
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAP--FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 208 SHEGPNGKTALHAAA 222
                  +T LH AA
Sbjct: 61  DARTKVDRTPLHMAA 75

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 53.2 bits (129), Expect = 3e-09
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 27/93 (29%)

Query: 80  EILEKCPLLLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRV 133
            I+E   +LL     VNAKD    T LH A +  H ++V  L++                
Sbjct: 81  NIVE---VLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY--------------- 122

Query: 134 GAAWQIIRMTNKEKNTALHEAVCHQNVDVVEIL 166
           GA    +   +K   TA   ++ + N D+ EIL
Sbjct: 123 GAD---VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 77.9 bits (193), Expect = 2e-17
 Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 21/134 (15%)

Query: 91  QVNAKDD--TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           +   K D       A   G ++ V  L+ER               GA    I   N +  
Sbjct: 33  KTKVKFDDGAVFLAACSSGDTEEVLRLLER---------------GAD---INYANVDGL 74

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           TALH+A    NVD+V+ L +   +     +N G  PL+ AA     ++   L+     V 
Sbjct: 75  TALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133

Query: 209 HEGPNGKTALHAAA 222
                G T L  A 
Sbjct: 134 AVNSEGDTPLDIAE 147

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 76.0 bits (188), Expect = 1e-16
 Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 32/142 (22%)

Query: 88  LLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII 140
            L+     V A +    TPL +A +    ++++  V R                      
Sbjct: 124 YLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ--------------------- 162

Query: 141 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLAL 200
                +   A  E       D  + L     +        G T L++AA    + ++  L
Sbjct: 163 ---GVDIEAARKEEERIMLRDARQWLNSGHIN-DVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 201 LENRTSVSHEGPNGKTALHAAA 222
           ++ R  V+ +  +G T LHAAA
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAA 240

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 72.1 bits (178), Expect = 3e-15
 Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 20/130 (15%)

Query: 93  NAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALH 152
           +AK      +    G    +   V +                      ++   +      
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVK---------------RK---KTKVKFDD-GAVFL 45

Query: 153 EAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGP 212
            A    + + V  L +   D    AN  G T L+ A    + +MV  L+EN  +++    
Sbjct: 46  AACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104

Query: 213 NGKTALHAAA 222
            G   LHAAA
Sbjct: 105 EGWIPLHAAA 114

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 70.6 bits (174), Expect = 8e-15
 Identities = 27/138 (19%), Positives = 44/138 (31%), Gaps = 28/138 (20%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           +N  D+    PLH AA  G+ DI  +L+ +               GA    +   N E +
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQ---------------GAH---VGAVNSEGD 140

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           T L  A      ++++                 +            +    L     +  
Sbjct: 141 TPLDIAEEEAMEELLQNEVNRQ-------GVDIEAARKEEERIMLRDARQWLNSGHINDV 193

Query: 209 HEGPNGKTALHAAAMRSY 226
               +G TALH AA + Y
Sbjct: 194 RHAKSGGTALHVAAAKGY 211

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 68.3 bits (168), Expect = 6e-14
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 23/128 (17%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
                    T LHVAA  G++++++ L++                      + + + +  
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQA---------------RYD---VNIKDYDGW 233

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           T LH A      +   IL +   D   + N  G+T   +A E      +  L + +  + 
Sbjct: 234 TPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADED-ILGYLEELQKKQNLLH 291

Query: 209 HEGPNGKT 216
            E    K+
Sbjct: 292 SEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 66.4 bits (163), Expect = 3e-13
 Identities = 26/143 (18%), Positives = 44/143 (30%), Gaps = 22/143 (15%)

Query: 80  EILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQI 139
           E+L+     + +     +       +    D  ++L                        
Sbjct: 153 ELLQ---NEVNRQGVDIEAARKEEERIMLRDARQWLNSG---------------HIN--- 191

Query: 140 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLA 199
                K   TALH A      +V+++L +   D     +  G TPL+ AA          
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRI 250

Query: 200 LLENRTSVSHEGPNGKTALHAAA 222
           L+EN   +      G+TA   A 
Sbjct: 251 LVENLCDMEAVNKVGQTAFDVAD 273

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.0 bits (123), Expect = 6e-08
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 2/83 (2%)

Query: 140 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLA 199
           ++M + ++           +   +E    +                  A  S  +  VL 
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKK--TKVKFDDGAVFLAACSSGDTEEVLR 58

Query: 200 LLENRTSVSHEGPNGKTALHAAA 222
           LLE    +++   +G TALH A 
Sbjct: 59  LLERGADINYANVDGLTALHQAC 81

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 25/92 (27%)

Query: 88  LLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII 140
           LL+Q    VN KD    TPLH AA +G  +  R LVE                      +
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN---------------LCD---M 258

Query: 141 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPD 172
              NK   TA   A       + E+  K++  
Sbjct: 259 EAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 73.6 bits (182), Expect = 3e-17
 Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 20/129 (15%)

Query: 92  VNAKD-DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTA 150
             +KD +TPLH AAK GH++ V+ L+ +               GA    +   +K+ NT 
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSK---------------GAD---VNARSKDGNTP 45

Query: 151 LHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHE 210
           LH A  + + ++V++L  +  D   + +  G TP ++A ++    +V  L      V+  
Sbjct: 46  LHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104

Query: 211 GPNGKTALH 219
                   H
Sbjct: 105 SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 59.3 bits (145), Expect = 6e-12
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 144 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN 203
           +K+ NT LH A  + + + V+ L  +  D   + +  G TPL++AA++  + +V  LL  
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 204 RTSVSHEGPNGKTALHAAAM 223
              V+    +G T  H A  
Sbjct: 65  GADVNARSKDGNTPEHLAKK 84

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 75.5 bits (187), Expect = 3e-17
 Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 22/138 (15%)

Query: 90  LQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKE 146
              N +D    TPL VA   G  + +  LVE                      +   + E
Sbjct: 26  FLRNYRDSYNRTPLMVACMLGMENAIDKLVEN---------------FD---KLEDKDIE 67

Query: 147 KNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTS 206
            +TAL  AV +  + + E L  +  +   + +  GKTPL  +     S M   LLE+  +
Sbjct: 68  GSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN 126

Query: 207 VSHEGPNGKTALHAAAMR 224
           V+     G+T L  A+  
Sbjct: 127 VNDRNLEGETPLIVASKY 144

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 73.2 bits (181), Expect = 2e-16
 Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 22/135 (16%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           +  KD    T L  A K     I   L+                 G+    +   +    
Sbjct: 61  LEDKDIEGSTALIWAVKNNRLGIAEKLLS---------------KGSN---VNTKDFSGK 102

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           T L  ++     ++   L +   +     N  G+TPL +A++   S +V  LLE    +S
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS 161

Query: 209 HEGPNGKTALHAAAM 223
                G TA  +A +
Sbjct: 162 ARDLTGLTAEASARI 176

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 64.7 bits (159), Expect = 3e-13
 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 22/116 (18%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VN KD    TPL  +  FG+S++  FL+E                GA    +   N E  
Sbjct: 94  VNTKDFSGKTPLMWSIIFGYSEMSYFLLE---------------HGA---NVNDRNLEGE 135

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENR 204
           T L  A  +   ++V+ L +   D   + +  G T    A       ++    E R
Sbjct: 136 TPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEVIKIFTEVR 190

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 62.0 bits (152), Expect = 4e-12
 Identities = 17/128 (13%), Positives = 39/128 (30%), Gaps = 25/128 (19%)

Query: 97  DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC 156
           +    +  +   +  + FL    +                       +    T L  A  
Sbjct: 9   EIVEKIKDEKSINQNLDFLRN-YR-----------------------DSYNRTPLMVACM 44

Query: 157 HQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKT 216
               + ++ L +         +  G T L  A ++    +   LL   ++V+ +  +GKT
Sbjct: 45  LGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKT 103

Query: 217 ALHAAAMR 224
            L  + + 
Sbjct: 104 PLMWSIIF 111

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.8 bits (115), Expect = 4e-07
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 7/81 (8%)

Query: 144 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN 203
           +K                 ++ L           ++Y +TPL +A      N +  L+EN
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGMENAIDKLVEN 57

Query: 204 RTSVSHEGPNGKTALHAAAMR 224
              +  +   G TAL  A   
Sbjct: 58  FDKLEDKDIEGSTALIWAVKN 78

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 38.9 bits (92), Expect = 5e-04
 Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 3/32 (9%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAK 120
           ++A+D    T    A  FG  ++++   E  +
Sbjct: 160 ISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 74.1 bits (183), Expect = 6e-17
 Identities = 23/137 (16%), Positives = 41/137 (29%), Gaps = 26/137 (18%)

Query: 92  VNAKD-DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTA 150
            + +     L  AA  G  + VR L+E                GA        N      
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEA---------------GAN---PNAPNSYGRRP 48

Query: 151 LHEAVCHQNVDVVEILTKE--DPDYPYSANNYGKT-PLYMAAESRSSNMVLALLENRTSV 207
           +       +  V E+L     +P+    A+    T P++ AA     + ++ L      +
Sbjct: 49  IQVM-MMGSARVAELLLLHGAEPN---CADPATLTRPVHDAAREGFLDTLVVLHRAGARL 104

Query: 208 SHEGPNGKTALHAAAMR 224
                 G+  +  A   
Sbjct: 105 DVRDAWGRLPVDLAEEL 121

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 72.5 bits (179), Expect = 2e-16
 Identities = 21/140 (15%), Positives = 40/140 (28%), Gaps = 33/140 (23%)

Query: 91  QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
             NA +     P+ V    G + +   L+                 GA        +   
Sbjct: 37  NPNAPNSYGRRPIQVMMM-GSARVAELLLLH---------------GAE---PNCADPAT 77

Query: 148 NT-ALHEAVCHQNVDVVEILTKE--DPDYPYSANNYGKTPLYMAAESRSSNMVLALLENR 204
            T  +H+A     +D + +L +     D     + +G+ P+ +A E    ++   L    
Sbjct: 78  LTRPVHDAAREGFLDTLVVLHRAGARLD---VRDAWGRLPVDLAEELGHRDVARYLRAAA 134

Query: 205 TSVSHEGPNGKTALHAAAMR 224
                    G       A  
Sbjct: 135 GGT-----RGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 60.2 bits (147), Expect = 9e-12
 Identities = 21/118 (17%), Positives = 33/118 (27%), Gaps = 32/118 (27%)

Query: 88  LLLQ----VNAKDD----TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQI 139
           LLL      N  D      P+H AA+ G  D +  L                  GA    
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA---------------GAR--- 103

Query: 140 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMV 197
           + + +      +  A    + DV   L         +    G     + A    S++ 
Sbjct: 104 LDVRDAWGRLPVDLAEELGHRDVARYLRA------AAGGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 49.4 bits (119), Expect = 7e-08
 Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 30/84 (35%)

Query: 88  LLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII 140
           +L +    ++ +D     P+ +A + GH D+ R+L                         
Sbjct: 96  VLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA---------------AG----- 135

Query: 141 RMTNKEKNTALHEAVCHQNVDVVE 164
                  +            D+ +
Sbjct: 136 ---GTRGSNHARIDAAEGPSDIPD 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 73.6 bits (182), Expect = 9e-17
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 24/136 (17%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VNA++    T L V    G+ +I R L+ R               GA      + ++   
Sbjct: 31  VNAQNGFGRTALQVMK-LGNPEIARRLLLR---------------GA---NPDLKDRTGF 71

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENR-TSV 207
             +H+A     +D ++ L +   D     +N G  PL++AA+     +V  L+++  ++V
Sbjct: 72  AVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130

Query: 208 SHEGPNGKTALHAAAM 223
            H    G TA   A +
Sbjct: 131 GHRNHKGDTACDLARL 146

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 72.0 bits (178), Expect = 4e-16
 Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 20/127 (15%)

Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
             L  AA  G  + +  L++                      +   N    TAL      
Sbjct: 7   NELASAAARGDLEQLTSLLQN---------------NVN---VNAQNGFGRTALQVMKLG 48

Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA 217
            N ++   L     + P   +  G   ++ AA +   + +  LLE +  V+ E   G   
Sbjct: 49  -NPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106

Query: 218 LHAAAMR 224
           LH AA  
Sbjct: 107 LHLAAKE 113

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 68.9 bits (170), Expect = 5e-15
 Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 27/130 (20%)

Query: 80  EILEKCPLLLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRV 133
           EI      LLL+    + KD      +H AA+ G  D ++ L+E                
Sbjct: 51  EIAR---RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF--------------- 92

Query: 134 GAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRS 193
            A    + + + E N  LH A    ++ VVE L K         N+ G T   +A     
Sbjct: 93  QAD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149

Query: 194 SNMVLALLEN 203
           + +V  +  N
Sbjct: 150 NEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 51.2 bits (124), Expect = 2e-08
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 3/81 (3%)

Query: 142 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL 201
           M        L  A    +++ +  L + + +   + N +G+T L +     +  +   LL
Sbjct: 1   MAEPW-GNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKLG-NPEIARRLL 57

Query: 202 ENRTSVSHEGPNGKTALHAAA 222
               +   +   G   +H AA
Sbjct: 58  LRGANPDLKDRTGFAVIHDAA 78

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 75.3 bits (186), Expect = 9e-17
 Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 24/140 (17%)

Query: 92  VNAKDD--TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNT 149
           V         L  ++  G  D+V+ ++                         + N E  T
Sbjct: 31  VKFNPLPLALLLDSSLEGEFDLVQRIIYE---------------VDD---PSLPNDEGIT 72

Query: 150 ALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV-- 207
           ALH AVC  + ++V+ L +   +   +A++ G TPL+ AA   +  +   L+E+  +V  
Sbjct: 73  ALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131

Query: 208 -SHEGPNGKTALHAAAMRSY 226
            ++                Y
Sbjct: 132 MTYSDMQTAADKCEEMEEGY 151

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 22/126 (17%)

Query: 98  TPLHVAAKFGHSDIVRFLVER-AKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC 156
             L    +          +    ++                      N      L ++  
Sbjct: 7   VSLPPGKRTNLRKTGSERIAHGMRV----KF----------------NPLPLALLLDSSL 46

Query: 157 HQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKT 216
               D+V+ +  E  D P   N+ G T L+ A  +  + +V  L++   +V+    +G T
Sbjct: 47  EGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWT 105

Query: 217 ALHAAA 222
            LH AA
Sbjct: 106 PLHCAA 111

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 70.3 bits (173), Expect = 6e-15
 Identities = 25/141 (17%), Positives = 43/141 (30%), Gaps = 23/141 (16%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
            +  +D   T LH A   GH++IV+FLV+                G     +   + +  
Sbjct: 63  PSLPNDEGITALHNAVCAGHTEIVKFLVQF---------------GVN---VNAADSDGW 104

Query: 149 TALHEAVCHQNVDVVEILTKE--DPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTS 206
           T LH A    NV V + L +          ++           E   +     L   +  
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK 164

Query: 207 VSHEGPNGKTALHAAAMRSYA 227
           +         AL     ++  
Sbjct: 165 MGIMNKGVIYALWDYEPQNDD 185

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 67.6 bits (166), Expect = 6e-14
 Identities = 27/137 (19%), Positives = 41/137 (29%), Gaps = 24/137 (17%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VNA D    TPLH AA   +  + +FLVE                GA   +  MT  +  
Sbjct: 96  VNAADSDGWTPLHCAASCNNVQVCKFLVE---------------SGA--AVFAMTYSDMQ 138

Query: 149 TA--LHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTS 206
           TA    E +        + L           N      L+         + +   +  T 
Sbjct: 139 TAADKCEEMEEGYTQCSQFLYGVQEK-MGIMNKGVIYALWDYEPQNDDELPMKEGDCMT- 196

Query: 207 VSHEGPNGKTALHAAAM 223
           + H     +     A +
Sbjct: 197 IIHREDEDEIEWWWARL 213

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 53.4 bits (129), Expect = 8e-09
 Identities = 11/75 (14%), Positives = 18/75 (24%), Gaps = 2/75 (2%)

Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
             +L                          N      L  ++     ++V  ++      
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDP 63

Query: 208 SHEGPNGKTALHAAA 222
           S     G TALH A 
Sbjct: 64  SLPNDEGITALHNAV 78

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 30/141 (21%)

Query: 91  QVNAKDD------TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTN 144
                          L  AA  G  ++V+  V+                          N
Sbjct: 10  SPRKARRARLNPLVLLLDAALTGELEVVQQAVKE---------------MND---PSQPN 51

Query: 145 KEKNTALHEAVCHQNVDVVEILTKE--DPDYPYSANNYGKTPLYMAAESRSSNMVLALLE 202
           +E  TALH A+C  N  +V+ L     + +   S +++G TPL+ AA    + + +AL++
Sbjct: 52  EEGITALHNAICGANYSIVDFLITAGANVN---SPDSHGWTPLHCAASCNDTVICMALVQ 108

Query: 203 NRTSVSHEGPN-GKTALHAAA 222
           +  ++     + G TA     
Sbjct: 109 HGAAIFATTLSDGATAFEKCD 129

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 22/136 (16%), Positives = 37/136 (27%), Gaps = 23/136 (16%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
            +  ++   T LH A    +  IV FL+                 GA    +   +    
Sbjct: 47  PSQPNEEGITALHNAICGANYSIVDFLITA---------------GAN---VNSPDSHGW 88

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSN--MVLALLENRTS 206
           T LH A    +  +   L +       +  + G T        R         L +   S
Sbjct: 89  TPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS 148

Query: 207 VSHEGPNGKTALHAAA 222
           +         AL   +
Sbjct: 149 MGLMNSGAVYALWDYS 164

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 70.8 bits (174), Expect = 3e-15
 Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 24/137 (17%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VN+ D    TPLH AA    + I   LV+                GA   I   T  +  
Sbjct: 80  VNSPDSHGWTPLHCAASCNDTVICMALVQH---------------GA--AIFATTLSDGA 122

Query: 149 TALHEAVCHQN--VDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTS 206
           TA  +   ++    D    L   +       N+     L+  + +   + +        +
Sbjct: 123 TAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYS-AEFGDELSFREGESVT 180

Query: 207 VSHEGPNGKTALHAAAM 223
           V       +T    AA+
Sbjct: 181 VLRRDGPEETDWWWAAL 197

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 56.1 bits (136), Expect = 8e-10
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
             L +A     ++VV+   KE  D P   N  G T L+ A    + ++V  L+    +V+
Sbjct: 23  VLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGANVN 81

Query: 209 HEGPNGKTALHAAAM 223
               +G T LH AA 
Sbjct: 82  SPDSHGWTPLHCAAS 96

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 22/94 (23%)

Query: 92  VNAKDD----TPLHVAAKF--GHSDIVRFLVER-AKL--------------TQHENEELE 130
           + A       T       +  G++D   +L +    +              +    +EL 
Sbjct: 113 IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELS 172

Query: 131 SRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVE 164
            R G +  ++R  +  + T    A  H     V 
Sbjct: 173 FREGESVTVLR-RDGPEETDWWWAALHGQEGYVP 205

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 74.0 bits (182), Expect = 4e-16
 Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 32/191 (16%)

Query: 57  ENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDD----TPLHVA---AKFGHS 109
           +   +       +      + +   L++    L     KD     T L  A      G +
Sbjct: 13  DRRSIFD--AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQN 70

Query: 110 DIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEIL--- 166
           D +  L++ A+    + + L+  V A       +  +  TALH A+  +N+ +V +L   
Sbjct: 71  DTIALLLDVAR----KTDSLKQFVNA---SYTDSYYKGQTALHIAIERRNMTLVTLLVEN 123

Query: 167 ----------TKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN---RTSVSHEGPN 213
                                  +G+ PL +AA +    +V  LL+N      +S     
Sbjct: 124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV 183

Query: 214 GKTALHAAAMR 224
           G T LHA    
Sbjct: 184 GNTVLHALVEV 194

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 72.9 bits (179), Expect = 1e-15
 Identities = 28/140 (20%), Positives = 40/140 (28%), Gaps = 37/140 (26%)

Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
            PL +AA      IV+FL++                      I   +   NT LH  V  
Sbjct: 150 LPLSLAACTNQLAIVKFLLQN---------------SWQPADISARDSVGNTVLHALVEV 194

Query: 158 QNVDVVEILTK---------------EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE 202
            +  V                              N  G TPL +AA S    ++  +L+
Sbjct: 195 ADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ 254

Query: 203 NRTSVSHEGPNGKTALHAAA 222
                     +     HAAA
Sbjct: 255 R-------EIHEPECRHAAA 267

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 70.6 bits (173), Expect = 7e-15
 Identities = 43/229 (18%), Positives = 73/229 (31%), Gaps = 40/229 (17%)

Query: 29  FNAAAAGNSEPFKD--MAGEEIKSLLT------AKTENTILHINIISQERENVST-KFVA 79
           F+A A  N +  +      +  K  LT       +T  T L   +++       T   + 
Sbjct: 18  FDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLL 77

Query: 80  EILEKCPLLLLQVNAKDD-------TPLHVAAKFGHSDIVRFLVER-AKLTQHENEELES 131
           ++  K   L   VNA          T LH+A +  +  +V  LVE  A +    N +   
Sbjct: 78  DVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFK 137

Query: 132 RVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDY--PYSANNYGKTPLYMAA 189
           +        R         L  A C   + +V+ L +         + ++ G T L+   
Sbjct: 138 KTKG-----RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALV 192

Query: 190 ES---------RSSNMVLALLENRTSVSHEGP-------NGKTALHAAA 222
           E            ++M   +L     +             G T L  AA
Sbjct: 193 EVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA 241

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.5 bits (139), Expect = 3e-10
 Identities = 24/157 (15%), Positives = 49/157 (31%), Gaps = 37/157 (23%)

Query: 93  NAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALH 152
              D   +  A    +   +  L+   + +         +     +      +   T L 
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRS--------KKRLTDSEFKD--PETGKTCLL 59

Query: 153 EAVCHQ---NVDVVEIL-----TKEDPDYPYSAN-----NYGKTPLYMAAESRSSNMVLA 199
           +A+ +      D + +L       +      +A+       G+T L++A E R+  +V  
Sbjct: 60  KAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTL 119

Query: 200 LLEN--------------RTSVSHEGPNGKTALHAAA 222
           L+EN              +T        G+  L  AA
Sbjct: 120 LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA 156

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 56.7 bits (137), Expect = 6e-10
 Identities = 15/116 (12%), Positives = 41/116 (35%), Gaps = 13/116 (11%)

Query: 78  VAEILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVG 134
           + + L +       ++A+D    T LH   +   + +       +   +     L +++ 
Sbjct: 163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL--ILGAKLH 220

Query: 135 AAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAE 190
              ++  +TN++  T L  A     + V+  + + +         +     + AA 
Sbjct: 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE--------IHEPECRHAAAH 268

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 37/114 (32%)

Query: 58  NTILHINIISQERENVSTKFVAE----ILEKCPLLLLQ---VNAKDD---TPLHVAAKFG 107
           NT+LH  +   +    +TKFV      IL     L          +    TPL +AA  G
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244

Query: 108 HSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC--HQN 159
              ++ ++++R                            +    H A    H +
Sbjct: 245 KIGVLAYILQR-------------------------EIHEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 21/102 (20%)

Query: 144 NKEKNTALHEAVCHQNVDVVEIL-------TKEDPDYPYSANNYGKTPLYMAAESRSSN- 195
                 ++ +AV   N   +E L        K   D  +     GKT L  A  +  +  
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 196 --MVLALLEN-----------RTSVSHEGPNGKTALHAAAMR 224
              +  LL+              S +     G+TALH A  R
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER 111

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 74.1 bits (182), Expect = 4e-16
 Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 28/169 (16%)

Query: 76  KFVAEILEKCPLLLLQVNAKDD---TPLHVAA---KFGHSDIVRFLVERAKLTQHENEEL 129
             +  +      L      +     T L  A    + G +  +  L++  K    ++   
Sbjct: 20  GLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDK----DSGNP 75

Query: 130 ESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEIL------------TKEDPDYPYSA 177
           +  V A          + ++ALH A+  +++  V++L             +    +  + 
Sbjct: 76  KPLVNA---QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTC 132

Query: 178 NNYGKTPLYMAAESRSSNMVLALLEN---RTSVSHEGPNGKTALHAAAM 223
             +G+ PL +AA ++  ++V  LLEN     S+      G T LHA  M
Sbjct: 133 FYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 70.2 bits (172), Expect = 8e-15
 Identities = 34/229 (14%), Positives = 63/229 (27%), Gaps = 41/229 (17%)

Query: 29  FNAAAAGNSE------PFKDMAGEEIKSLLTAKTEN--TILHINIISQERENVST-KFVA 79
           F+  + G  E       +     + +      +     T L   +++ +    +    + 
Sbjct: 7   FSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLL 66

Query: 80  EILEKCPLLLLQVNAKDD-------TPLHVAAKFGHSDIVRFLVER-AKLTQHENEELES 131
           +I +        VNA+         + LH+A +      V+ LVE  A +          
Sbjct: 67  QIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQ 126

Query: 132 RVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDY--PYSANNYGKTPLYMAA 189
           +                  L  A C +  DVV  L +         + ++ G T L+   
Sbjct: 127 KHQGT------CFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180

Query: 190 ESRSSN----------------MVLALLENRTSVSHEGPNGKTALHAAA 222
               ++                M   L             G T L  AA
Sbjct: 181 MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAA 229

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 66.0 bits (161), Expect = 3e-13
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 17/130 (13%)

Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVG-----AAWQIIRMTNKEKNTALH 152
            PL +AA     D+V +L+E               +G     A   ++   N  +N+AL 
Sbjct: 138 LPLSLAACTKQWDVVTYLLENPHQPASLEA--TDSLGNTVLHAL--VMIADNSPENSALV 193

Query: 153 EAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGP 212
             +    + +   L          +N+ G TPL +AA+     +   +L+          
Sbjct: 194 IHMYDGLLQMGARLCPTVQL-EEISNHQGLTPLKLAAKEGKIEIFRHILQR-------EF 245

Query: 213 NGKTALHAAA 222
           +G  A H   
Sbjct: 246 SGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 27/154 (17%), Positives = 40/154 (25%), Gaps = 36/154 (23%)

Query: 96  DDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAV 155
           D   L      G  + +  L+E           L                   T L +AV
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLE----------YLRWNSKYLTDSAYTEGSTGKTCLMKAV 51

Query: 156 CHQN---VDVVEILTKEDPDYPY----------SANNYGKTPLYMAAESRSSNMVLALLE 202
            +        +  L + D D                  G + L++A E RS   V  L+E
Sbjct: 52  LNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE 111

Query: 203 N-------------RTSVSHEGPNGKTALHAAAM 223
           N             +         G+  L  AA 
Sbjct: 112 NGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC 145

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 10/71 (14%)

Query: 58  NTILHINIISQERENVSTKFVAE----ILEKCPLLLLQ---VNAKDD---TPLHVAAKFG 107
           NT+LH  ++  +    ++  V      +L+    L          +    TPL +AAK G
Sbjct: 173 NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG 232

Query: 108 HSDIVRFLVER 118
             +I R +++R
Sbjct: 233 KIEIFRHILQR 243

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 70.5 bits (174), Expect = 7e-16
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 19/125 (15%)

Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
             L  AA+ G  D VR L+                 GA    +   ++   T L+ A  H
Sbjct: 16  KKLLEAARAGQDDEVRILMAN---------------GA---DVNAKDEYGLTPLYLATAH 57

Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA 217
            ++++VE+L K   D   + +  G TPL++AA      +   LL++   V+ +   GKTA
Sbjct: 58  GHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTA 116

Query: 218 LHAAA 222
              + 
Sbjct: 117 FDISI 121

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 62.8 bits (154), Expect = 6e-13
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 22/114 (19%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VNAKD+   TPL++A   GH +IV  L++                GA    +   +    
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVLLKN---------------GAD---VNAVDAIGF 81

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE 202
           T LH A    ++++ E+L K   D   + + +GKT   ++  + + ++   L +
Sbjct: 82  TPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 54.3 bits (132), Expect = 9e-10
 Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
              L EA      D V IL     D   + + YG TPLY+A       +V  LL+N   V
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73

Query: 208 SHEGPNGKTALHAAAM 223
           +     G T LH AA 
Sbjct: 74  NAVDAIGFTPLHLAAF 89

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 38.9 bits (92), Expect = 3e-04
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 80  EILEKCPLLLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVE 117
           EI E   +LL     VNA+D    T   ++   G+ D+   L +
Sbjct: 94  EIAE---VLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 72.6 bits (178), Expect = 8e-16
 Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 22/138 (15%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
               D    T LH A   GH++IV FL++                G     +   +    
Sbjct: 33  ATRTDQDSRTALHWACSAGHTEIVEFLLQL---------------GVP---VNDKDDAGW 74

Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
           + LH A      ++V+ L  +      + N  G TPL+ AA      + + LLE   +  
Sbjct: 75  SPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133

Query: 209 HEGPNGKTALHAAAMRSY 226
            +     TA+H AA +  
Sbjct: 134 AKDHYDATAMHRAAAKGN 151

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 69.5 bits (170), Expect = 1e-14
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 19/129 (14%)

Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
              ++A      ++   ++                  +       T+++  TALH A   
Sbjct: 9   MICNLAYSGKLDELKERILAD---------------KSL---ATRTDQDSRTALHWACSA 50

Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA 217
            + ++VE L +         ++ G +PL++AA +    +V ALL     V+    NG T 
Sbjct: 51  GHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTP 109

Query: 218 LHAAAMRSY 226
           LH AA ++ 
Sbjct: 110 LHYAASKNR 118

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 65.7 bits (160), Expect = 3e-13
 Identities = 38/157 (24%), Positives = 57/157 (36%), Gaps = 22/157 (14%)

Query: 87  LLLLQ---VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQI- 139
            LL     VN KDD   +PLH+AA  G  +IV+ L+ +       N+   + +  A    
Sbjct: 58  FLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN 117

Query: 140 --------------IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPL 185
                             +    TA+H A    N+ +V IL           +  G TPL
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPL 176

Query: 186 YMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA 222
           ++A +         L+    S+  E    KT L  A 
Sbjct: 177 HLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 72.9 bits (179), Expect = 1e-15
 Identities = 34/229 (14%), Positives = 67/229 (29%), Gaps = 40/229 (17%)

Query: 29  FNAAAAGNSEPFKDMA------GEEIKSLLTAKTEN--TILHINIISQER-ENVSTKFVA 79
           F+  + G+ +  + +        + +      +     T L   +++     N +   + 
Sbjct: 10  FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILL 69

Query: 80  EILEKCPLLLLQVNAKDD-------TPLHVAAKFGHSDIVRFLVER-AKLTQHENEELES 131
           +I EK   +   +N+          T LH+A +      V  LVE+ A +          
Sbjct: 70  DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF-- 127

Query: 132 RVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDY--PYSANNYGKTPLYMAA 189
                 +            L  A C     +V  LT+           ++ G T L+   
Sbjct: 128 ---FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184

Query: 190 ESRSSN---------MVLALLENRTSVSHEGP-------NGKTALHAAA 222
               +          M   LL     +  +         +G + L  AA
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA 233

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 71.3 bits (175), Expect = 3e-15
 Identities = 35/175 (20%), Positives = 58/175 (33%), Gaps = 36/175 (20%)

Query: 78  VAEILEKCPLLLLQ---VNAKDD-------TPLHVAA---KFGHSDIVRFLVERAKLTQH 124
              +      LL     +  ++        T L  A      G +D +  L++ A+ T +
Sbjct: 18  PDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGN 77

Query: 125 ENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEIL-------------TKEDP 171
             E +           R       TALH A+  +    VE+L                 P
Sbjct: 78  MREFI-------NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQP 130

Query: 172 DYPYSANNYGKTPLYMAAESRSSNMVLALLEN---RTSVSHEGPNGKTALHAAAM 223
                   +G+ PL +AA +   ++V  L EN   +  +  +   G T LHA   
Sbjct: 131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVA 185

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 26/137 (18%), Positives = 42/137 (30%), Gaps = 34/137 (24%)

Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
            PL +AA      IV +L E                G     +R  +   NT LH  V  
Sbjct: 142 LPLSLAACTNQPHIVHYLTEN---------------GHKQADLRRQDSRGNTVLHALVAI 186

Query: 158 QN---------VDVVEILTK------EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE 202
            +           + ++L         D +     NN G +PL MAA++    +   ++ 
Sbjct: 187 ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246

Query: 203 NRTSVSHEGPNGKTALH 219
              +            H
Sbjct: 247 REIAD----AAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 50.5 bits (121), Expect = 7e-08
 Identities = 27/159 (16%), Positives = 43/159 (27%), Gaps = 47/159 (29%)

Query: 96  DDTPLHVAAKFG----HSDIVRFLVER-AKLTQHENEELESRVGAAWQIIRMTNKEKNTA 150
           +   L      G       ++ FL+    +LT  E  E                    T 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFRE---------------PSTGKTC 49

Query: 151 LHEAVCHQN---VDVVEILTKEDPDYPY----------SANNYGKTPLYMAAESRSSNMV 197
           L +A+ + +    D + IL                        G+T L++A E R  + V
Sbjct: 50  LPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYV 109

Query: 198 LALLEN--------------RTSVSHEGPNGKTALHAAA 222
             L+E                         G+  L  AA
Sbjct: 110 ELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA 148

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 10/71 (14%)

Query: 58  NTILHINII----SQERENVSTKFVAEILEKC------PLLLLQVNAKDDTPLHVAAKFG 107
           NT+LH  +     ++E     TK    +L KC        L   +N    +PL +AAK G
Sbjct: 177 NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236

Query: 108 HSDIVRFLVER 118
              I + ++ R
Sbjct: 237 KIGIFQHIIRR 247

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 65.7 bits (161), Expect = 3e-14
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 19/109 (17%)

Query: 92  VNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTAL 151
           + +     L  AA+ G  D VR L+                 GA    +   +K  +T L
Sbjct: 20  MGSDLGKKLLEAARAGQDDEVRILMAN---------------GAD---VAAKDKNGSTPL 61

Query: 152 HEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLAL 200
           H A  + +++VV++L +   D   + + +GKT   ++ ++ + ++   L
Sbjct: 62  HLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 60.7 bits (148), Expect = 2e-12
 Identities = 28/124 (22%), Positives = 39/124 (31%), Gaps = 22/124 (17%)

Query: 103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDV 162
            +   H      LV R               G+          +    L EA      D 
Sbjct: 1   GSSHHHHHHSSGLVPR---------------GSH------MGSDLGKKLLEAARAGQDDE 39

Query: 163 VEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA 222
           V IL     D   + +  G TPL++AA +    +V  LLE    V  +   GKTA   + 
Sbjct: 40  VRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI 98

Query: 223 MRSY 226
               
Sbjct: 99  DNGN 102

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 64.3 bits (158), Expect = 6e-14
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 19/106 (17%)

Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
           TPLH+AA+ GH ++V+ L+E                GA    +   +K   T LH A  +
Sbjct: 4   TPLHLAARNGHLEVVKLLLEA---------------GAD---VNAKDKNGRTPLHLAARN 45

Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN 203
            +++VV++L +   D   + +  G+TPL++AA +    +V  LLE 
Sbjct: 46  GHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 54.3 bits (132), Expect = 3e-10
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 5/79 (6%)

Query: 148 NTALHEAVCHQNVDVVEILTKE--DPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRT 205
            T LH A  + +++VV++L +   D +   + +  G+TPL++AA +    +V  LLE   
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 206 SVSHEGPNGKTALHAAAMR 224
            V+ +  NG+T LH AA  
Sbjct: 60  DVNAKDKNGRTPLHLAARN 78

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 52.7 bits (128), Expect = 1e-09
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 21/78 (26%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VNAKD    TPLH+AA+ GH ++V+ L+E                GA    +   +K   
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLE---------------AGAD---VNAKDKNGR 69

Query: 149 TALHEAVCHQNVDVVEIL 166
           T LH A  + +++VV++L
Sbjct: 70  TPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 36.9 bits (87), Expect = 6e-04
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 181 GKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA 222
           G+TPL++AA +    +V  LLE    V+ +  NG+T LH AA
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 43

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 15/122 (12%), Positives = 33/122 (27%), Gaps = 23/122 (18%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           + ++     T      + G +DI           +          GA    I    K   
Sbjct: 68  IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK---------GAD---ITALYKPYK 115

Query: 149 TALHEAVCHQNVDVVE-------ILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL 201
             + + + +  VD  E       I ++         + +G T L      +    +  + 
Sbjct: 116 IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKDKWGLTALEFVKRCQKPIALKMME 174

Query: 202 EN 203
           + 
Sbjct: 175 DY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 19/144 (13%), Positives = 40/144 (27%), Gaps = 35/144 (24%)

Query: 93  NAKDD-TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTAL 151
           NA  +   +  AA  G  +    L E+               G   +     +  K+  L
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEK---------------GYEDK----ESVLKSNIL 42

Query: 152 HEAVCHQN----VDVVEILTKE--DPDYPYSANNYGKTPLYMAAESRSSNMVLA------ 199
           ++ + + N      +   L  +  D     S    G T  +   +   +++         
Sbjct: 43  YDVLRNNNDEARYKISMFLINKGADIK---SRTKEGTTLFFPLFQGGGNDITGTTELCKI 99

Query: 200 LLENRTSVSHEGPNGKTALHAAAM 223
            LE    ++      K  +     
Sbjct: 100 FLEKGADITALYKPYKIVVFKNIF 123

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 19/140 (13%), Positives = 30/140 (21%), Gaps = 36/140 (25%)

Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
             L          I  FL+ +               GA    I+   KE  T        
Sbjct: 44  DVLRNNNDEARYKISMFLINK---------------GA---DIKSRTKEGTTLFFPLFQG 85

Query: 158 QNVDVVEILTKE--------DPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSH 209
              D+               D     +     K  ++    +   +    +   +   S 
Sbjct: 86  GGNDITGTTELCKIFLEKGADIT---ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQ 142

Query: 210 EGPN-------GKTALHAAA 222
            G         G TAL    
Sbjct: 143 SGLQLLIKDKWGLTALEFVK 162

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 14/103 (13%), Positives = 29/103 (28%), Gaps = 23/103 (22%)

Query: 31  AAAAGNSEPFKDMAGEEIKSLLTA--------KTENTILHINIISQERENVSTKFVAEIL 82
               G ++       E  K  L          K    ++  NI +   +        E++
Sbjct: 82  LFQGGGNDITGTT--ELCKIFLEKGADITALYKPYKIVVFKNIFNYFVD------ENEMI 133

Query: 83  EKCPLLLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVER 118
               L+  Q    +  KD    T L    +      ++ + + 
Sbjct: 134 PLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 7/84 (8%), Positives = 20/84 (23%), Gaps = 6/84 (7%)

Query: 145 KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSN----MVLAL 200
             +   +  A      +    L ++  +     +      LY    + +      + + L
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 201 LENRTSVSHEGPNGKTALHAAAMR 224
           +     +      G T        
Sbjct: 62  INKGADIKSRTKEGTTLFFPLFQG 85

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 55.0 bits (132), Expect = 4e-09
 Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 18/133 (13%)

Query: 92  VNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTAL 151
           + A++     +AA+ GH  ++  L E               +    +I+ M   E   A 
Sbjct: 124 IQAENYQAFRLAAENGHLHVLNRLCE---------------LAPT-EIMAMIQAENYHAF 167

Query: 152 HEAVCHQNVDVVEILTKEDPDYPYS-ANNYGKTPLYMAAESRS-SNMVLALLENRTSVSH 209
             A  + ++ V+  L +  P    +            AA  R   N++  LL+    +++
Sbjct: 168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY 227

Query: 210 EGPNGKTALHAAA 222
              +         
Sbjct: 228 AEIHEFEYGEKYV 240

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 55.0 bits (132), Expect = 4e-09
 Identities = 21/152 (13%), Positives = 40/152 (26%), Gaps = 39/152 (25%)

Query: 92  VNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTAL 151
           + A++     +AA+ GH  ++  L E A                          E   A 
Sbjct: 159 IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM----------------IQAENYYAF 202

Query: 152 HEAVCHQN-VDVVEILTKEDPDYPYSANN-----------------YGKTPLYMAAESRS 193
             A   +   +V+  L        Y+  +                      ++ A +  +
Sbjct: 203 RWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSN 262

Query: 194 SNMVLALLENRTSVSHEGPNGKTALHAAAMRS 225
            + V  L+        E   G   L     R+
Sbjct: 263 PDGVFDLVTK-----SECLQGFYMLRNLIRRN 289

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 51.9 bits (124), Expect = 4e-08
 Identities = 29/206 (14%), Positives = 61/206 (29%), Gaps = 35/206 (16%)

Query: 28  FFNAAAAGNSEPFKDMAGEEIKSLLTAKT---ENTILHINIISQERENVSTKFVAEILEK 84
            F    + N      ++ +E   +    T   E     + +        + +  ++  +K
Sbjct: 29  LFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKK 88

Query: 85  CPLLLLQVNAKDDTPLHVAAKFGHS---DIVRFLVERAKLTQHENEELESRVGAAWQIIR 141
                     K +    VAA  G S   D +  L+                      I++
Sbjct: 89  --------GIKSEVICFVAAITGCSSALDTLCLLLT---------------SDE---IVK 122

Query: 142 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS-ANNYGKTPLYMAAESRSSNMVLAL 200
           +   E   A   A  + ++ V+  L +  P    +           +AAE+   +++  L
Sbjct: 123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 182

Query: 201 LENRTSVSHE--GPNGKTALHAAAMR 224
            E   + +          A   AA+ 
Sbjct: 183 CELAPTEATAMIQAENYYAFRWAAVG 208

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 13/146 (8%), Positives = 37/146 (25%), Gaps = 12/146 (8%)

Query: 88  LLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELE--SRVGAAWQIIRMTNK 145
            LL              ++G   +  F+       +  ++  +  +  G    + +    
Sbjct: 217 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL 276

Query: 146 EKNTALHEAVCHQNVDVVEILT--KEDPDYPYSAN-----NYGKTPLYMAAESRSSNMVL 198
           +    L   +   +  +++ +      P     A            L +A    +     
Sbjct: 277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 336

Query: 199 ALLENRTSVSHEGPNGKTALHAAAMR 224
            LL   + ++    N     +     
Sbjct: 337 LLLSIPSVLALTKANN---YYINETG 359

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 25/156 (16%), Positives = 49/156 (31%), Gaps = 13/156 (8%)

Query: 72  NVSTKFVAEILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEE 128
           N  +     +L+    L   +  +D    T LH                 AK        
Sbjct: 177 NYDSGTFEALLD---YLYPCLILEDSMNRTILHHIIITSGM---TGCSAAAKYYLDILMG 230

Query: 129 LESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPY--SANNYGKTPLY 186
              +       I+    EK +  ++    +   ++E L  +        + ++ G T L 
Sbjct: 231 WIVKKQNR--PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN 288

Query: 187 MAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA 222
           +AA   + ++V ALL+          +G   +   A
Sbjct: 289 IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 37/162 (22%)

Query: 80  EILEKCPLLLLQVNAKDD----TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGA 135
           E+ +  P   L +N   D    TPLH      + ++V+ LV+                G+
Sbjct: 111 EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH---------------GS 155

Query: 136 AWQIIRMTNKEKNTALHEAVCHQN---VDVVEILTKEDPDYPYSANNYGKTPLYMAAESR 192
                   +    + L +AV   N       E L           ++  +T L+    + 
Sbjct: 156 N---RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITS 212

Query: 193 SSN------------MVLALLENRTSVSHEGPNGKTALHAAA 222
                          ++  +++ +      G N K +     
Sbjct: 213 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK 254

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 48.9 bits (116), Expect = 3e-07
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 143 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESR----SSNMVL 198
            ++  NT LH      N+++V+ L K   +     +N G++ L  A +S     S     
Sbjct: 127 VDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEA 185

Query: 199 ALLENRTSVSHEGPNGKTALHAAAMRS 225
            L      +  E    +T LH   + S
Sbjct: 186 LLDYLYPCLILEDSMNRTILHHIIITS 212

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 18/151 (11%), Positives = 45/151 (29%), Gaps = 32/151 (21%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
               D+   + L  A K  ++              +++   E+ +   +  + + +    
Sbjct: 157 RLYGDNMGESCLVKAVKSVNN--------------YDSGTFEALLDYLYPCLILEDSMNR 202

Query: 149 TALHEAVCHQNVD------------VVEILTKEDPDYPYSANNYGKTPLYMAAESRSSN- 195
           T LH  +    +             ++  + K+      S  N  ++        R  + 
Sbjct: 203 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 262

Query: 196 --MVLALLENRTSVSHEGPNGKTALHAAAMR 224
              +         ++ +  NG T L+ AA  
Sbjct: 263 LENLDLKWIIANMLNAQDSNGDTCLNIAARL 293

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 41.6 bits (97), Expect = 9e-05
 Identities = 13/100 (13%), Positives = 33/100 (33%), Gaps = 1/100 (1%)

Query: 125 ENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVD-VVEILTKEDPDYPYSANNYGKT 183
           E +E+ + +              N           +  V +       +     + +G T
Sbjct: 74  EIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNT 133

Query: 184 PLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAM 223
           PL+      +  +V  L+++ ++  +    G++ L  A  
Sbjct: 134 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 173

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 25/92 (27%)

Query: 88  LLLQ----VNAKD---DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII 140
            ++Q    ++AK    +T LH AA +   D ++ L++                 A    +
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG---------------RAL---V 252

Query: 141 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPD 172
              N+   TAL  A    + +  E+L +    
Sbjct: 253 GTVNEAGETALDIARKKHHKECEELLEQAQAG 284

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 18/118 (15%)

Query: 95  KDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEA 154
            D+T LH+A +      +  +     L Q+               +     + +TALH  
Sbjct: 168 PDETALHLAVRSVDRTSLHIV---DFLVQNSGN------------LDKQTGKGSTALHYC 212

Query: 155 VCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMV--LALLENRTSVSHE 210
               N + +++L +        AN  G+TPL +A   +  +    L    +    SH 
Sbjct: 213 CLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHV 269

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 21/111 (18%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 58  NTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVE 117
            T LH+ + S +R ++    + + L +    L +   K  T LH      +++ ++ L+ 
Sbjct: 170 ETALHLAVRSVDRTSLH---IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 226

Query: 118 RAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
                            A+   I + N+   T L  A   ++    E+LT+
Sbjct: 227 G---------------KAS---IEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 136 AWQIIRMTNKEKNTALHEAVCHQN---VDVVEILTKEDPDYPYSANNYGKTPLYMAAESR 192
               +   ++   TALH AV   +   + +V+ L +   +        G T L+    + 
Sbjct: 158 EKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLTD 216

Query: 193 SSNMVLALLENRTSVSHEGPNGKTALHAAAMRSYA 227
           ++  +  LL  + S+     +G+T L  A    + 
Sbjct: 217 NAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 251

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 31/171 (18%), Positives = 53/171 (30%), Gaps = 50/171 (29%)

Query: 89  LLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           +L V             F   D+      ++ L+    EE++        II   +    
Sbjct: 21  ILSVFEDA-----FVDNFDCKDVQDMP--KSILS---KEEID-------HIIMSKDAVSG 63

Query: 149 T-ALHEAVCHQNVDVVEILTKE--DPDYPYSANNY--------GKTPLYMAAESRSSN-- 195
           T  L   +  +  ++V+   +E    +Y +  +            T +Y+    R  N  
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 196 ------------MVL----ALLENRTS--VSHEGPNG--KTALHAAAMRSY 226
                         L    ALLE R +  V  +G  G  KT +      SY
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 27/166 (16%), Positives = 57/166 (34%), Gaps = 38/166 (22%)

Query: 46  EEIKSLLTAKT--ENTILHINIISQERENVSTKFVAEILEK-CPLLLLQVNAKDDTPLHV 102
           EEI  ++ +K     T+     +  ++E +  KFV E+L      L+  +  +   P   
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP--- 105

Query: 103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC----HQ 158
                      ++ +R +L  ++N+           + R    +    L +A+      +
Sbjct: 106 -----SMMTRMYIEQRDRL-YNDNQVFAKY-----NVSR---LQPYLKLRQALLELRPAK 151

Query: 159 NVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENR 204
           NV +                  GKT +  A +   S  V   ++ +
Sbjct: 152 NVLI------------DGVLGSGKTWV--ALDVCLSYKVQCKMDFK 183

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.98
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.98
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.89
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.77

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.7e-37  Score=216.30  Aligned_cols=160  Identities=23%  Similarity=0.335  Sum_probs=145.5

Q ss_pred             HHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHH
Q 037129           26 PIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAK  105 (227)
Q Consensus        26 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~  105 (227)
                      ..|+.||..|+.++|+.|++.|.|++..|..|.||||+|  +..++.+++++|++.    +.+++.++..|+||||+|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a--~~~~~~~~~~~ll~~----gad~~~~d~~g~TpLh~A~~   79 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHA--AENGHKEVVKLLISK----GADVNAKDSDGRTPLHHAAE   79 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHhc----ccchhhhccCCCCHHHHHHH
Confidence            469999999999999999999999999999999999999  999999999999985    77889999999999999999


Q ss_pred             cCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHH
Q 037129          106 FGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPL  185 (227)
Q Consensus       106 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l  185 (227)
                      .|+.+++++|+++|++++.                  ++..|+||||+|+..|+.+++++|++.|+++ +.++..|.|||
T Consensus        80 ~g~~~~v~~Ll~~gadvn~------------------~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL  140 (169)
T 4gpm_A           80 NGHKEVVKLLISKGADVNA------------------KDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPL  140 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             cCCHHHHHHHHHCcCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHH
Confidence            9999999999999998765                  7899999999999999999999999999995 48899999999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCccc
Q 037129          186 YMAAESRSSNMVLALLENRTSVSHE  210 (227)
Q Consensus       186 ~~A~~~~~~~~v~~Ll~~g~~~~~~  210 (227)
                      ++|+..++.+++++|+++|++++..
T Consensus       141 ~~A~~~g~~~iv~~Ll~~GA~ie~~  165 (169)
T 4gpm_A          141 DLAREHGNEEVVKLLEKQGGWLEHH  165 (169)
T ss_dssp             HHHHHTTCHHHHHHHHTC-------
T ss_pred             HHHHHcCCHHHHHHHHHCCCCcCCC
Confidence            9999999999999999999998753

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.2e-37  Score=230.02  Aligned_cols=181  Identities=19%  Similarity=0.165  Sum_probs=168.6

Q ss_pred             ccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHH
Q 037129           22 QQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLH  101 (227)
Q Consensus        22 ~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~  101 (227)
                      ..+.+|||+|+..|+.++|++|++.|.+++..+..|.||||+|  +..++.+++++|++..   ...++..+..|.||||
T Consensus        55 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~L~  129 (253)
T 1yyh_A           55 RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA--VSADAQGVFQILIRNR---ATDLDARMHDGTTPLI  129 (253)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHHST---TSCTTCCCTTCCCHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHcC---CCCccccCCCCCcHHH
Confidence            3456789999999999999999999999999999999999999  9999999999999852   3367888999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCC
Q 037129          102 VAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYG  181 (227)
Q Consensus       102 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~  181 (227)
                      +|+..|+.+++++|++.|...+.                  .+..|.||||+|+..|+.+++++|++.|+++. ..+..|
T Consensus       130 ~A~~~~~~~~v~~Ll~~g~~~~~------------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g  190 (253)
T 1yyh_A          130 LAARLAVEGMLEDLINSHADVNA------------------VDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNRE  190 (253)
T ss_dssp             HHHHHTCSSHHHHHHHTTCCTTC------------------BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTS
T ss_pred             HHHHcChHHHHHHHHHcCCCCCC------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCC
Confidence            99999999999999999988664                  78899999999999999999999999999954 789999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          182 KTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       182 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      .||||+|+..++.+++++|+++|++++.+|..|.||+++|+.+|+
T Consensus       191 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~  235 (253)
T 1yyh_A          191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH  235 (253)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999987

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.1e-36  Score=222.01  Aligned_cols=181  Identities=19%  Similarity=0.165  Sum_probs=168.0

Q ss_pred             ccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHH
Q 037129           22 QQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLH  101 (227)
Q Consensus        22 ~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~  101 (227)
                      ..+.+|||.|+..|+.++|++|++.|.+++..+..|.||||+|  +..++.+++++|++.   .+..++..+..|.||||
T Consensus        23 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~L~   97 (223)
T 2f8y_A           23 RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA--VSADAQGVFQILIRN---RATDLDARMHDGTTPLI   97 (223)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHB---TTSCTTCCCTTCCCHHH
T ss_pred             CCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHHc---CCCCcccCCCCCCcHHH
Confidence            4456779999999999999999999999999999999999999  999999999999984   23467888999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCC
Q 037129          102 VAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYG  181 (227)
Q Consensus       102 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~  181 (227)
                      +|+..++.+++++|+++|...+.                  .+..|.||||+|+..++.+++++|++.|+++. ..+..|
T Consensus        98 ~A~~~~~~~~~~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g  158 (223)
T 2f8y_A           98 LAARLAVEGMLEDLINSHADVNA------------------VDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNRE  158 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTC------------------BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTC
T ss_pred             HHHHhCcHHHHHHHHHcCCCCcC------------------cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCC
Confidence            99999999999999999988654                  68889999999999999999999999999854 788999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          182 KTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       182 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      .||||+|+..++.+++++|+++|++++.++..|.||+++|+.+|+
T Consensus       159 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  203 (223)
T 2f8y_A          159 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH  203 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             cCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999886

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.7e-37  Score=231.85  Aligned_cols=198  Identities=19%  Similarity=0.211  Sum_probs=163.5

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhhhhc---cccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCH
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGEEIK---SLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTP   99 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~~~~---~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tp   99 (227)
                      .+.+|||.|+..|+.++|++|++.|.+   ++..+..|.||||+|  +..|+.+++++|++.    +.+++.++..|+||
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA--AILGEASTVEKLYAA----GAGVLVAERGGHTA   81 (282)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCSSCCCTTSCCH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCCCCCCCCCH
Confidence            345579999999999999999998887   668888999999999  999999999999986    77888999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcccccchhhhhh-------------HHHH----------------HHHHHhccCCCCcH
Q 037129          100 LHVAAKFGHSDIVRFLVERAKLTQHENEELESR-------------VGAA----------------WQIIRMTNKEKNTA  150 (227)
Q Consensus       100 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~-------------~~~~----------------~~~~~~~~~~~~t~  150 (227)
                      ||+|+..|+.+++++|+++|.............             ....                ...++..+..|.||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence            999999999999999999886643221110000             0000                00134467789999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          151 LHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       151 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ||+|+..|+.+++++|++.|+++....+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+.+|+
T Consensus       162 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~  237 (282)
T 1oy3_D          162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN  237 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCC
Confidence            9999999999999999999999664444569999999999999999999999999999999999999999998876

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.3e-37  Score=226.72  Aligned_cols=179  Identities=22%  Similarity=0.189  Sum_probs=161.0

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHV  102 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~  102 (227)
                      .+.+|||.|+..|+.++|++|++.|.+++..+..|.||||+|  +..++.+++++|++.    +.+++.++..|.||||+
T Consensus        39 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~  112 (231)
T 3aji_A           39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA--ASAGXDEIVKALLVK----GAHVNAVNQNGCTPLHY  112 (231)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHH--HHcCHHHHHHHHHHc----CCCCCCCCCCCCCHHHH
Confidence            455679999999999999999999988888888899999999  999999999998885    66778888889999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCC
Q 037129          103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGK  182 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~  182 (227)
                      |+..++.+++++|+++|...+.                  .+..|.||||+|+..|+.+++++|++.|+++. ..+..|.
T Consensus       113 A~~~~~~~~~~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~  173 (231)
T 3aji_A          113 AASKNRHEIAVMLLEGGANPDA------------------KDHYDATAMHRAAAKGNLKMVHILLFYKASTN-IQDTEGN  173 (231)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCC------------------cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc-ccCCCCC
Confidence            9999999999999998887654                  67889999999999999999999999999854 7889999


Q ss_pred             CHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          183 TPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       183 t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ||||+|+..++.+++++|+++|++++.++..|.||+++|+.+++
T Consensus       174 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          174 TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHH
Confidence            99999999999999999999999999999999999999987653

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=2.7e-36  Score=221.24  Aligned_cols=195  Identities=15%  Similarity=0.103  Sum_probs=164.6

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhh-hhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhC-CcccccccCCCCCHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGE-EIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKC-PLLLLQVNAKDDTPLH  101 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~g~tpl~  101 (227)
                      +.+|||.|+..|+.++|++|++. |.+++..+..|.||||+|  +..|+.+++++|++..... ....+..+..|+||||
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA--ALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH--HHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            45689999999999999999997 999999999999999999  9999999999999973321 1112566778999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCC
Q 037129          102 VAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYG  181 (227)
Q Consensus       102 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~  181 (227)
                      +|+..|+.+++++|+++|...+..........     .....+..|.||||+|+..|+.+++++|++.|+++. ..+..|
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g  154 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGASVSARATGSVFHY-----RPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR-AQDSLG  154 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSC-----CTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTS
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCcccCCcceee-----cccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCC
Confidence            99999999999999999988765321100000     011124579999999999999999999999999954 889999


Q ss_pred             CCHHHHHHHcCcHHHH----HHHHhcCCCC------cccCCCCCCHHHHHHHhcC
Q 037129          182 KTPLYMAAESRSSNMV----LALLENRTSV------SHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       182 ~t~l~~A~~~~~~~~v----~~Ll~~g~~~------~~~~~~g~t~l~~a~~~~~  226 (227)
                      .||||+|+..++.+++    ++|+++|+++      +.+|..|.||||+|+.+|+
T Consensus       155 ~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~  209 (232)
T 2rfa_A          155 NTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN  209 (232)
T ss_dssp             CCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred             CCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC
Confidence            9999999999999988    9999999998      5899999999999999886

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=7.5e-37  Score=238.38  Aligned_cols=212  Identities=16%  Similarity=0.199  Sum_probs=157.6

Q ss_pred             CCcccccccccchhhhccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhC
Q 037129            6 IEIEEAPLLDSNREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKC   85 (227)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~   85 (227)
                      +.+..++.+..+..|..+. ++||+|+..|+.++|++|++.|.+++..+..|.||||+|  +..|+.+++++|++..   
T Consensus         3 g~~~~~~~~~~~~~d~~g~-t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~g---   76 (364)
T 3ljn_A            3 GSMTDFPKLNRIKSDDENM-EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA--CKFGCVDTAKYLASVG---   76 (364)
T ss_dssp             -------------CCHHHH-HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHHCCHHHHHHHHHHC---
T ss_pred             CchhhccCCCccccCCCCC-CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHH--HHcCCHHHHHHHHHCC---
Confidence            5566777777776666655 459999999999999999999999999999999999999  9999999999999873   


Q ss_pred             CcccccccCCCCCHHHHHHHcCCHHHHHHHHHh----hhcccc-----------------cchhhhhhH-----------
Q 037129           86 PLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVER----AKLTQH-----------------ENEELESRV-----------  133 (227)
Q Consensus        86 ~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~----~~~~~~-----------------~~~~~~~~~-----------  133 (227)
                       ..  ..+..|+||||+|+..|+.+++++|++.    |...+.                 .+....+++           
T Consensus        77 -~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  153 (364)
T 3ljn_A           77 -EV--HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYL  153 (364)
T ss_dssp             -CC--CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGH
T ss_pred             -CC--ccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchH
Confidence             22  2334677777777777777777777777    332221                 111111111           


Q ss_pred             HHHHHH------HHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCC----CcccccCCCCHHHHHHHcCcHHHHHHHHhc
Q 037129          134 GAAWQI------IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDY----PYSANNYGKTPLYMAAESRSSNMVLALLEN  203 (227)
Q Consensus       134 ~~~~~~------~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~----~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  203 (227)
                      .....+      ++..+..|.||||+|+..|+.+++++|++.|++.    .+..+..|.||||+|+..|+.+++++|+++
T Consensus       154 ~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  233 (364)
T 3ljn_A          154 EMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM  233 (364)
T ss_dssp             HHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            111111      2346778999999999999999999999998872    337788999999999999999999999999


Q ss_pred             CCCCcccCCCCCCHHHHHHHhcC
Q 037129          204 RTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       204 g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      |++++.+|..|.||||+|+.+|+
T Consensus       234 gad~~~~d~~g~tpL~~A~~~g~  256 (364)
T 3ljn_A          234 GIDVNMEDNEHTVPLYLSVRAAM  256 (364)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHhCh
Confidence            99999999999999999999886

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-37  Score=230.84  Aligned_cols=178  Identities=19%  Similarity=0.206  Sum_probs=147.4

Q ss_pred             CCHHHHHHHhcCCch-HHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037129           24 MDPIFFNAAAAGNSE-PFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHV  102 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~-~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~  102 (227)
                      +.+||+.|+..++.+ +++.|++.|++++..|..|.||||+|  +..|+.+++++|++.    +.+++..+..|.||+++
T Consensus        52 ~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A--~~~g~~~~v~~Ll~~----~a~~~~~~~~g~t~l~~  125 (269)
T 4b93_B           52 FCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVA--ALHGRADLIPLLLKH----GANAGARNADQAVPLHL  125 (269)
T ss_dssp             -----------------------CCCCTTCCCTTSCCHHHHH--HHTTCTTHHHHHHHT----TCCTTCCCTTCCCHHHH
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHcCcHHHHHHHHhc----CCCcCccCCCCCCcccc
Confidence            445799999888764 78999999999999999999999999  999999999999986    67788899999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCC
Q 037129          103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGK  182 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~  182 (227)
                      |+..++.+++++|++.|..++.                  ++..|.||||+|+..|+.+++++|++.|++++ ..+..|.
T Consensus       126 a~~~~~~~~~~~Ll~~g~~~n~------------------~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn-~~~~~g~  186 (269)
T 4b93_B          126 ACQQGHFQVVKCLLDSNAKPNK------------------KDLSGNTPLIYACSGGHHELVALLLQHGASIN-ASNNKGN  186 (269)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCC------------------CCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT-CBCTTSC
T ss_pred             ccccChHHHHHHHHHCCCCCCC------------------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC-ccccCCC
Confidence            9999999999999999988765                  78999999999999999999999999999954 8899999


Q ss_pred             CHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          183 TPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       183 t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|.
T Consensus       187 t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          187 TALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence            99999999999999999999999999999999999999987763

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.2e-35  Score=213.15  Aligned_cols=180  Identities=21%  Similarity=0.250  Sum_probs=163.2

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhhhh-ccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHH
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGEEI-KSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLH  101 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~~~-~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~  101 (227)
                      ...++|+.|+..|+.+.|+.|+..+. +++..+..|.||||+|  +..|+.+++++|++.    +.+++.++..|+||||
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l~   77 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA--VHNNDIEIAKALIDR----GADINLQNSISDSPYL   77 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHH
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCCCCCCCCCHHH
Confidence            34567999999999999999999665 8888999999999999  999999999999986    7788899999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhh-cccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccC
Q 037129          102 VAAKFGHSDIVRFLVERAK-LTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNY  180 (227)
Q Consensus       102 ~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~  180 (227)
                      +|+..|+.+++++|++.+. ..+                  ..+..|.||||+|+..++.+++++|++.|....+..+..
T Consensus        78 ~A~~~~~~~~~~~Ll~~~~~~~~------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  139 (201)
T 3hra_A           78 YAGAQGRTEILAYMLKHATPDLN------------------KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF  139 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCTT------------------CCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTT
T ss_pred             HHHHcCCHHHHHHHHhccCcccc------------------cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCC
Confidence            9999999999999996654 332                  367889999999999999999999999994335688999


Q ss_pred             CCCHHHHHHHcCc-----HHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          181 GKTPLYMAAESRS-----SNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       181 ~~t~l~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      |.||||.|+..++     .+++++|+++|++++.+|..|.|||++|+.+|+
T Consensus       140 g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  190 (201)
T 3hra_A          140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGY  190 (201)
T ss_dssp             SCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Confidence            9999999999998     999999999999999999999999999999886

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.3e-36  Score=222.64  Aligned_cols=193  Identities=16%  Similarity=0.157  Sum_probs=109.7

Q ss_pred             HHHHHHhcCCchHHHhhHh----hhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037129           27 IFFNAAAAGNSEPFKDMAG----EEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHV  102 (227)
Q Consensus        27 ~l~~a~~~g~~~~v~~ll~----~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~  102 (227)
                      +||.|+..|+.++|++|++    .+.+++..+..|.||||+|  +..|+.+++++|++.    +.+++..+..|+||||+
T Consensus        12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l~~   85 (241)
T 1k1a_A           12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA--VITTLPSVVRLLVTA----GASPMALDRHGQTAAHL   85 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHH--HHcCCHHHHHHHHHc----CCCccccCCCCCCHHHH
Confidence            3555555555555555554    3444444454555555555  555555555555543    34444445555555555


Q ss_pred             HHHcCCHHHHHHHHHhhh----cccccchhhhhhHHHH---------HHH------HHhcc-CCCCcHHHHHHhcCCHHH
Q 037129          103 AAKFGHSDIVRFLVERAK----LTQHENEELESRVGAA---------WQI------IRMTN-KEKNTALHEAVCHQNVDV  162 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~----~~~~~~~~~~~~~~~~---------~~~------~~~~~-~~~~t~l~~A~~~~~~~~  162 (227)
                      |+..|+.+++++|++.+.    ..+..+....+++...         ..+      .+..+ ..|.||||+|+..++.++
T Consensus        86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (241)
T 1k1a_A           86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  165 (241)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHH
Confidence            555555555555555544    2111111111111000         000      01133 567777777777777777


Q ss_pred             HHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          163 VEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       163 ~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      +++|++.|+++. ..+..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+.+|+
T Consensus       166 v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~  228 (241)
T 1k1a_A          166 VQLLLQHGANVN-AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV  228 (241)
T ss_dssp             HHHHHHTTCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHH
T ss_pred             HHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCc
Confidence            777777777743 667777777777777777777777777777777777777777777776654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.3e-35  Score=218.30  Aligned_cols=196  Identities=23%  Similarity=0.282  Sum_probs=140.4

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      +.+|||.|+..|+.+++++|++.|.+++..+..|.||||+|  +..|+.+++++|++.    +..++..+..|.||||+|
T Consensus        11 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A   84 (237)
T 3b7b_A           11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEA--AENNHLEAVKYLIKA----GALVDPKDAEGSTCLHLA   84 (237)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHTTCHHHHHHHHTT----TCCCCCCCTTSCCHHHHH
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHH--HHhCCHHHHHHHHhC----CCCCCCCCCCCCcHHHHH
Confidence            34457777777777777777777777666666777777777  777777777777654    555666666677777777


Q ss_pred             HHcCCHHHHHHHHHhh-hcccccchhhhhhHHHH---------HHH------HHhccCCCCcHHHHHHhcCCHHHHHHHH
Q 037129          104 AKFGHSDIVRFLVERA-KLTQHENEELESRVGAA---------WQI------IRMTNKEKNTALHEAVCHQNVDVVEILT  167 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~---------~~~------~~~~~~~~~t~l~~A~~~~~~~~~~~ll  167 (227)
                      +..|+.+++++|++.| ...+..+....+++...         ..+      ++.++..|.||||+|+..|+.+++++|+
T Consensus        85 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  164 (237)
T 3b7b_A           85 AKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL  164 (237)
T ss_dssp             HHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            7777777777777766 33332222222221111         011      1235677889999999999999999999


Q ss_pred             hcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          168 KEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       168 ~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      +.|+++. ..+..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+.+|+
T Consensus       165 ~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          165 AAKCDLH-AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             TTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCH
T ss_pred             HcCCCCC-CcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHH
Confidence            9988854 778889999999999999999999999999999999999999999988764

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.8e-35  Score=216.82  Aligned_cols=173  Identities=25%  Similarity=0.275  Sum_probs=148.0

Q ss_pred             cccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhh
Q 037129           52 LTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELES  131 (227)
Q Consensus        52 ~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  131 (227)
                      ..|..|.||||+|  +..|+.+++++|++.+...+..++.++..|+||||+|+..|+.+++++|+++|...+..+....+
T Consensus         4 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   81 (241)
T 1k1a_A            4 RADEDGDTPLHIA--VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT   81 (241)
T ss_dssp             ---CTTCCHHHHH--HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ccCCCCCcHHHHH--HHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence            5678999999999  99999999999999888888999999999999999999999999999999999887765554444


Q ss_pred             hHHHH---------HHH----------HHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcC
Q 037129          132 RVGAA---------WQI----------IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESR  192 (227)
Q Consensus       132 ~~~~~---------~~~----------~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~  192 (227)
                      ++...         ..+          .+..+..|.||||+|+..++.+++++|++.|+++....+..|.||||+|+..+
T Consensus        82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~  161 (241)
T 1k1a_A           82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN  161 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence            33322         111          12345678999999999999999999999999966443378999999999999


Q ss_pred             cHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          193 SSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       193 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      +.+++++|+++|++++.++..|.||||+|+.+|+
T Consensus       162 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  195 (241)
T 1k1a_A          162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL  195 (241)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTC
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            9999999999999999999999999999999876

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.6e-36  Score=223.42  Aligned_cols=185  Identities=19%  Similarity=0.161  Sum_probs=139.3

Q ss_pred             cchhhhccCCHHHHHHHhcC-------------CchHHHhhHhhhhccc-cccCCCCchhhhhhhhcccccccHHHHHHH
Q 037129           16 SNREIKQQMDPIFFNAAAAG-------------NSEPFKDMAGEEIKSL-LTAKTENTILHINIISQERENVSTKFVAEI   81 (227)
Q Consensus        16 ~~~~~~~~~~~~l~~a~~~g-------------~~~~v~~ll~~~~~~~-~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~   81 (227)
                      .+..+.. +.+|||.|+..|             +.+++++|++.|.+++ ..+..|.||||+|  +..|+.+++++|++.
T Consensus         3 vn~~d~~-g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~   79 (253)
T 1yyh_A            3 VNVRGPD-GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA--ARYSRSDAAKRLLEA   79 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHH--HHTTCHHHHHHHHHT
T ss_pred             CCCCCCC-CCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHH--HHcCCHHHHHHHHHc
Confidence            3445554 455699999987             8999999999999986 4588999999999  999999999999986


Q ss_pred             HHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhh-cccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCH
Q 037129           82 LEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAK-LTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNV  160 (227)
Q Consensus        82 ~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~  160 (227)
                          +.+++..+..|+||||+|+..|+.+++++|++.+. ..+                  ..+..|.||||+|+..++.
T Consensus        80 ----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~------------------~~~~~g~t~L~~A~~~~~~  137 (253)
T 1yyh_A           80 ----SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD------------------ARMHDGTTPLILAARLAVE  137 (253)
T ss_dssp             ----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTT------------------CCCTTCCCHHHHHHHHTCS
T ss_pred             ----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc------------------ccCCCCCcHHHHHHHcChH
Confidence                77888999999999999999999999999999987 333                  3678999999999999999


Q ss_pred             HHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          161 DVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       161 ~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      +++++|++.|+++. ..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+.+|+
T Consensus       138 ~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~  202 (253)
T 1yyh_A          138 GMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS  202 (253)
T ss_dssp             SHHHHHHHTTCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCC
Confidence            99999999999954 788999999999999999999999999999999999999999999999886

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=7.5e-36  Score=219.50  Aligned_cols=173  Identities=18%  Similarity=0.178  Sum_probs=142.7

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      +.+||+.|+..|+.+++++|++.|.+++..+..|.||||+|  +..++.+++++|++..   +..++..+..|+||||+|
T Consensus        44 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~~~~Ll~~~---~~~~~~~~~~g~t~L~~A  118 (237)
T 3b7b_A           44 QRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLA--AKKGHYEVVQYLLSNG---QMDVNCQDDGGWTPMIWA  118 (237)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHH--HHTTCHHHHHHHHTTT---CCCTTCCCTTSCCHHHHH
T ss_pred             CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH--HHcCCHHHHHHHHhCC---CCCcccCCCCCCCHHHHH
Confidence            45679999999999999999999998888888999999999  9999999999998852   356778888899999999


Q ss_pred             HHcCCHHHHHHHHHhhhcccccchhhhhhHHHHH---------HH------HHhccCCCCcHHHHHHhcCCHHHHHHHHh
Q 037129          104 AKFGHSDIVRFLVERAKLTQHENEELESRVGAAW---------QI------IRMTNKEKNTALHEAVCHQNVDVVEILTK  168 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~---------~~------~~~~~~~~~t~l~~A~~~~~~~~~~~ll~  168 (227)
                      +..++.+++++|+++|...+..+....+++....         .+      ++..+..|.||||+|+..++.+++++|++
T Consensus       119 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  198 (237)
T 3b7b_A          119 TEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS  198 (237)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHH
Confidence            9999999999999998887665554444433221         11      13466789999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHh
Q 037129          169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE  202 (227)
Q Consensus       169 ~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~  202 (227)
                      .|+++ +.++..|.||||+|+..++...+..|++
T Consensus       199 ~gad~-~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          199 RDSDV-TLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             TTCCT-TCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             cCCCC-CccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99995 4889999999999999999876665553

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3e-35  Score=222.05  Aligned_cols=194  Identities=18%  Similarity=0.157  Sum_probs=160.1

Q ss_pred             ccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHH
Q 037129           22 QQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLH  101 (227)
Q Consensus        22 ~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~  101 (227)
                      ..+.++||.|+..|+.++|++|++.|.+++..+..|.||||+|  +..|+.+++++|++.    +.+++.++..|+||||
T Consensus        57 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----ga~~~~~~~~g~t~L~  130 (285)
T 3d9h_A           57 VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEA--CLGGHLSCVKILLKH----GAQVNGVTADWHTPLF  130 (285)
T ss_dssp             CCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCSSCCCTTCCCHHH
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHCCcHHHHHHHHHC----CCCCCCCCCCCCCHHH
Confidence            3455679999999999999999999999999999999999999  999999999999986    7788899999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHH---------HHH------HHhccCCCCcHHHHHHhcCCHHHHHHH
Q 037129          102 VAAKFGHSDIVRFLVERAKLTQHENEELESRVGAA---------WQI------IRMTNKEKNTALHEAVCHQNVDVVEIL  166 (227)
Q Consensus       102 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~---------~~~------~~~~~~~~~t~l~~A~~~~~~~~~~~l  166 (227)
                      +|+..|+.+++++|+++|........ ..+++...         ..+      ++.++..|.||||+|+..++.+++++|
T Consensus       131 ~A~~~~~~~~v~~Ll~~g~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L  209 (285)
T 3d9h_A          131 NACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL  209 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCSCT-TSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence            99999999999999999987654322 22222111         111      134667788888888888888888888


Q ss_pred             HhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHh
Q 037129          167 TKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMR  224 (227)
Q Consensus       167 l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~  224 (227)
                      ++.|+++.  .+..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+.+
T Consensus       210 l~~ga~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          210 LESGADVN--QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPE  265 (285)
T ss_dssp             HHTTCCTT--CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT
T ss_pred             HHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcCc
Confidence            88888864  377788888888888888888888888888888888888888888743

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.7e-35  Score=215.24  Aligned_cols=179  Identities=16%  Similarity=0.093  Sum_probs=132.1

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhh--hcccc-ccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEE--IKSLL-TAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPL  100 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~--~~~~~-~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl  100 (227)
                      +.+|||+|+..|+.+++++|++.|  ++++. .+..|.||||+|  +..++.+++++|++..  .+.+++..+..|.|||
T Consensus        36 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~~~~Ll~~g--~~~~~~~~~~~g~t~L  111 (228)
T 2dzn_A           36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA--CSVGNLEVVKSLYDRP--LKPDLNKITNQGVTCL  111 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH--HHHCCHHHHHHHHSSS--SCCCTTCCCTTCCCHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH--HHcCCHHHHHHHHhCC--CCcccccCCcCCCCHH
Confidence            345677777777777777777766  55444 666777777777  7777777777777641  1255666677777777


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccC
Q 037129          101 HVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNY  180 (227)
Q Consensus       101 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~  180 (227)
                      |+|+..|+.+++++|+++|...+.                  ++..|.||||+|+..|+.+++++|++.|....+..+..
T Consensus       112 ~~A~~~~~~~~~~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~  173 (228)
T 2dzn_A          112 HLAVGKKWFEVSQFLIENGASVRI------------------KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ  173 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCC------------------CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTT
T ss_pred             HHHHHcCCHhHHHHHHHcCCCccc------------------cCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCC
Confidence            777777777777777777766543                  56778888888888888888888888883334577788


Q ss_pred             CCCHHHHHHHcCcHHHHHHHH-hcCCCCcccCCCCCCHHHHHHHh
Q 037129          181 GKTPLYMAAESRSSNMVLALL-ENRTSVSHEGPNGKTALHAAAMR  224 (227)
Q Consensus       181 ~~t~l~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~a~~~  224 (227)
                      |.||||+|+..++.+++++|+ ++|++++.+|..|.||+++|+..
T Consensus       174 g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          174 GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence            888888888888888888888 77888888888888888887654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=6.5e-36  Score=227.04  Aligned_cols=195  Identities=23%  Similarity=0.239  Sum_probs=169.3

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHV  102 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~  102 (227)
                      ...++|+.||..|+.++|++|++.|.+++..+..|.||||+|  +..|+.+++++|++.    +.+++..+..|+||||+
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----ga~~~~~~~~g~tpL~~  112 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA--CIDDNVDMVKFLVEN----GANINQPDNEGWIPLHA  112 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCcHHHH
Confidence            446789999999999999999999999999999999999999  999999999999985    77888999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccchhhhhhHHHH---------HHHH--------------------------H------
Q 037129          103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAA---------WQII--------------------------R------  141 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~---------~~~~--------------------------~------  141 (227)
                      |+..|+.+++++|+++|...+..+....+++...         ..++                          .      
T Consensus       113 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (299)
T 1s70_B          113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (299)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence            9999999999999999988765544333322110         0000                          0      


Q ss_pred             -hccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHH
Q 037129          142 -MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHA  220 (227)
Q Consensus       142 -~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  220 (227)
                       ..+..|.||||+|+..|+.+++++|++.|+++. ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++
T Consensus       193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~  271 (299)
T 1s70_B          193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN-IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV  271 (299)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTS
T ss_pred             hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence             134679999999999999999999999999954 889999999999999999999999999999999999999999999


Q ss_pred             HHHh
Q 037129          221 AAMR  224 (227)
Q Consensus       221 a~~~  224 (227)
                      |+..
T Consensus       272 A~~~  275 (299)
T 1s70_B          272 ADED  275 (299)
T ss_dssp             CCSG
T ss_pred             HHHH
Confidence            8654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.4e-35  Score=220.51  Aligned_cols=195  Identities=17%  Similarity=0.091  Sum_probs=158.9

Q ss_pred             CCHHHHHHHhcCCchHH----HhhHhhhhcccc----ccCCCCchhhhhhhhcc---cccccHHHHHHHHHhCCcc---c
Q 037129           24 MDPIFFNAAAAGNSEPF----KDMAGEEIKSLL----TAKTENTILHINIISQE---RENVSTKFVAEILEKCPLL---L   89 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v----~~ll~~~~~~~~----~~~~g~t~L~~a~~~~~---~~~~~~~~l~~~~~~~~~~---~   89 (227)
                      +.++||.|+..|+.+.|    ++|++.|.+++.    .+..|.||||+|  +..   |+.+++++|++........   +
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A--~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA--VLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH--HHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH--HHccccchHHHHHHHHhcCCcccchhhhc
Confidence            45789999999999855    555558999887    789999999999  988   9999999999986654211   1


Q ss_pred             c----cccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHH
Q 037129           90 L----QVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEI  165 (227)
Q Consensus        90 ~----~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~  165 (227)
                      +    ..+..|+||||+|+..|+.+++++|+++|+..+..+........     ....+..|.||||+|+..|+.+++++
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~-----~~~~~~~g~tpL~~A~~~~~~~~v~~  154 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKH-----QGTCFYFGELPLSLAACTKQWDVVTY  154 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCC-----SSSCCCSCSSHHHHHHHTTCHHHHHH
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccc-----ccccccCCCCHHHHHHHcCCHHHHHH
Confidence            1    23467999999999999999999999999887652111000000     00011239999999999999999999


Q ss_pred             HHh---cCCCCCcccccCCCCHHHHHHH--cCcHH-------HHHHHHhcCCCC-------cccCCCCCCHHHHHHHhcC
Q 037129          166 LTK---EDPDYPYSANNYGKTPLYMAAE--SRSSN-------MVLALLENRTSV-------SHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       166 ll~---~~~~~~~~~~~~~~t~l~~A~~--~~~~~-------~v~~Ll~~g~~~-------~~~~~~g~t~l~~a~~~~~  226 (227)
                      |++   .|+++. ..+..|.||||+|+.  .++.+       ++++|+++|+++       +.+|..|.||||+|+.+|+
T Consensus       155 Ll~~~~~ga~~n-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  233 (256)
T 2etb_A          155 LLENPHQPASLE-ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK  233 (256)
T ss_dssp             HHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HHhccccCCCcC-ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC
Confidence            999   899854 889999999999998  88888       999999999999       9999999999999999986

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.1e-35  Score=223.75  Aligned_cols=181  Identities=21%  Similarity=0.215  Sum_probs=151.3

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHh------------------
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEK------------------   84 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~------------------   84 (227)
                      .+.+|||+|+..|+.++|++|++.|.+++..+..|.||||+|  +..++.+++++|++....                  
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A--~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  121 (282)
T 1oy3_D           44 LGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA--CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP  121 (282)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHH--TTTTCHHHHHHHSSSCCSSCCCC-------------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCcchhHhhhccCCCCchhhHHHHhhcccccCc
Confidence            345679999999999999999999999999999999999999  999999999999874211                  


Q ss_pred             -------------------------CCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHH
Q 037129           85 -------------------------CPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQI  139 (227)
Q Consensus        85 -------------------------~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  139 (227)
                                               .+..++..+..|.||||+|+..|+.+++++|+++|...+.               
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---------------  186 (282)
T 1oy3_D          122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK---------------  186 (282)
T ss_dssp             ----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC---------------
T ss_pred             chhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCC---------------
Confidence                                     1223667788999999999999999999999999988764               


Q ss_pred             HHhcc-CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHH
Q 037129          140 IRMTN-KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTAL  218 (227)
Q Consensus       140 ~~~~~-~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l  218 (227)
                         .+ ..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..++.+++++|+++|++++.++..|.||+
T Consensus       187 ---~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl  262 (282)
T 1oy3_D          187 ---PEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPC  262 (282)
T ss_dssp             ---CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-------
T ss_pred             ---CCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-cccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccc
Confidence               44 45999999999999999999999999995 48899999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 037129          219 HAAAMR  224 (227)
Q Consensus       219 ~~a~~~  224 (227)
                      ++|...
T Consensus       263 ~~a~~~  268 (282)
T 1oy3_D          263 SSSGSD  268 (282)
T ss_dssp             ------
T ss_pred             cccCCc
Confidence            998764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6.2e-35  Score=213.79  Aligned_cols=178  Identities=21%  Similarity=0.277  Sum_probs=164.2

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhc-cccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIK-SLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHV  102 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~  102 (227)
                      .+++|+.|+..|+++.+++|++.+.+ .+..+..|.||||+|  +..|+.+++++|++.    +.+++.++..|+||||+
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~   79 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA--CSAGHTEIVEFLLQL----GVPVNDKDDAGWSPLHI   79 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCSCCCCTTSCCHHHH
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH--HHcCcHHHHHHHHHh----CCCCCCcCCCCCCHHHH
Confidence            46679999999999999999986544 457788999999999  999999999999986    67788899999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCC
Q 037129          103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGK  182 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~  182 (227)
                      |+..|+.+++++|+++|...+.                  .+..|.||||+|+..++.+++++|++.|.++. ..+..|.
T Consensus        80 A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~  140 (231)
T 3aji_A           80 AASAGXDEIVKALLVKGAHVNA------------------VNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDA  140 (231)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSC
T ss_pred             HHHcCHHHHHHHHHHcCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCC
Confidence            9999999999999999988654                  68899999999999999999999999999854 7888999


Q ss_pred             CHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          183 TPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       183 t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ||||.|+..++.+++++|+++|++++.+|..|.||||+|+.+|+
T Consensus       141 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  184 (231)
T 3aji_A          141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER  184 (231)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999876

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.5e-35  Score=223.77  Aligned_cols=175  Identities=17%  Similarity=0.089  Sum_probs=160.2

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      +.+|||+|+..|+.++|++|++.|.+++..  +|.||||+|  +..|+.+++++|++.    +.+++.++..|+||||+|
T Consensus        31 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A--~~~g~~~~v~~Ll~~----ga~~~~~d~~g~t~L~~A  102 (285)
T 3kea_A           31 GHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQA--ATLEDTKIVKILLFS----GLDDSQFDDKGNTALYYA  102 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHH--TTSSSCHHHHHHHHT----TCCTTCCCTTSCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHH--HHcCCHHHHHHHHHC----CCCCCCcCCCCCcHHHHH
Confidence            455799999999999999999999997766  589999999  999999999999986    778889999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCC-CcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCC
Q 037129          104 AKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK-NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGK  182 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~  182 (227)
                      +..|+.+++++|+++|+..+.                  .+..| .||||+|+..|+.+++++|++.|++...  ...|.
T Consensus       103 ~~~g~~~~v~~Ll~~ga~~~~------------------~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~  162 (285)
T 3kea_A          103 VDSGNMQTVKLFVKKNWRLMF------------------YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILL  162 (285)
T ss_dssp             HHTTCHHHHHHHHHHCGGGGG------------------CSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHH
T ss_pred             HHcCCHHHHHHHHhcCCCCCc------------------cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCc
Confidence            999999999999999988654                  67888 7999999999999999999999987521  22889


Q ss_pred             CHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCH-HHHHHHhcC
Q 037129          183 TPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA-LHAAAMRSY  226 (227)
Q Consensus       183 t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~a~~~~~  226 (227)
                      ||||+|+..++.+++++|+++|++++.++..|.|| ||+|+.+|+
T Consensus       163 t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~  207 (285)
T 3kea_A          163 SCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD  207 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTC
T ss_pred             cHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCC
Confidence            99999999999999999999999999999999998 999999886

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.4e-35  Score=215.55  Aligned_cols=179  Identities=19%  Similarity=0.205  Sum_probs=162.1

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhhccc-cccCCCCchhhhhhhhcccccccHHHHHHHHHhCCccccc-ccCCCCCHHHH
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEIKSL-LTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQ-VNAKDDTPLHV  102 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~tpl~~  102 (227)
                      .+|||.|+..|+.++|++|++.+.+.. ..+..|.||||+|  +..|+.+++++|++.+.  ..+++. .+..|+||||+
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~~~--~~~~~~~~~~~g~t~L~~   78 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS--VSFQAHEITSFLLSKME--NVNLDDYPDDSGWTPFHI   78 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHTCT--TCCGGGCCCTTSCCHHHH
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHH--HHcCCHHHHHHHHhccc--cccccccCCCCCCCHHHH
Confidence            568999999999999999999888866 4888999999999  99999999999999632  244555 78899999999


Q ss_pred             HHHcCCHHHHHHHHHhh--hcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccC
Q 037129          103 AAKFGHSDIVRFLVERA--KLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNY  180 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~  180 (227)
                      |+..|+.+++++|+++|  ...+                  ..+..|.||||+|+..++.+++++|++.|+++ +..+..
T Consensus        79 A~~~~~~~~~~~Ll~~g~~~~~~------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~  139 (228)
T 2dzn_A           79 ACSVGNLEVVKSLYDRPLKPDLN------------------KITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKF  139 (228)
T ss_dssp             HHHHCCHHHHHHHHSSSSCCCTT------------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTT
T ss_pred             HHHcCCHHHHHHHHhCCCCcccc------------------cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCC
Confidence            99999999999999998  4433                  36788999999999999999999999999995 488899


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhcC-CCCcccCCCCCCHHHHHHHhcC
Q 037129          181 GKTPLYMAAESRSSNMVLALLENR-TSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       181 ~~t~l~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      |.||||+|+..++.+++++|+++| ++++.+|..|.||||+|+.+|+
T Consensus       140 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~  186 (228)
T 2dzn_A          140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH  186 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCC
Confidence            999999999999999999999999 9999999999999999999886

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1e-34  Score=226.92  Aligned_cols=202  Identities=18%  Similarity=0.164  Sum_probs=158.9

Q ss_pred             hhhhccCCHHHHHHHhcCCchHHHhhH--------hhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCccc
Q 037129           18 REIKQQMDPIFFNAAAAGNSEPFKDMA--------GEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLL   89 (227)
Q Consensus        18 ~~~~~~~~~~l~~a~~~g~~~~v~~ll--------~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~   89 (227)
                      ..+...+.+|||+|+..|+.+++++|+        +.|.+++..|..|.||||+|  +..|+.+++++|++.    +.++
T Consensus       119 ~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A--~~~g~~~iv~~Ll~~----ga~~  192 (373)
T 2fo1_E          119 IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA--VLARRRRLVAYLMKA----GADP  192 (373)
T ss_dssp             TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCS
T ss_pred             ccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHH--HHcChHHHHHHHHHC----CCCC
Confidence            334344566788888888888887776        56778888888888888888  888888888888875    6667


Q ss_pred             ccccCCCCCHHHHHHHcCCHHHHHHHHHhh---hcccccchhhhhhHHH------------HHHHHH-------------
Q 037129           90 LQVNAKDDTPLHVAAKFGHSDIVRFLVERA---KLTQHENEELESRVGA------------AWQIIR-------------  141 (227)
Q Consensus        90 ~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~~~~~~~------------~~~~~~-------------  141 (227)
                      +..+..|.||||+|+..|+.+++++|++++   ...+..+....+++..            ...++.             
T Consensus       193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~  272 (373)
T 2fo1_E          193 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK  272 (373)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGT
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccccccc
Confidence            778888888888888888888888888876   3443333322222211            111111             


Q ss_pred             -hccCCCCcHHHHHHhcCCHHHHHHHHhcC-CCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHH
Q 037129          142 -MTNKEKNTALHEAVCHQNVDVVEILTKED-PDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALH  219 (227)
Q Consensus       142 -~~~~~~~t~l~~A~~~~~~~~~~~ll~~~-~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~  219 (227)
                       ..+..|.||||+|+..|+.+++++|++.+ .+ .+..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||+
T Consensus       273 ~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~  351 (373)
T 2fo1_E          273 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQ  351 (373)
T ss_dssp             SSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHH
T ss_pred             CcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHH
Confidence             13557899999999999999999999887 55 5588999999999999999999999999999999999999999999


Q ss_pred             HHHHhcC
Q 037129          220 AAAMRSY  226 (227)
Q Consensus       220 ~a~~~~~  226 (227)
                      +|+.+|+
T Consensus       352 ~A~~~g~  358 (373)
T 2fo1_E          352 LAQANNH  358 (373)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            9999886

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=6.2e-36  Score=219.90  Aligned_cols=185  Identities=18%  Similarity=0.176  Sum_probs=146.4

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhhhh----ccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCC
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGEEI----KSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDT   98 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~~~----~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   98 (227)
                      .+.+|||.|+..|+.+++++|++.+.    +++..+..|.||||+|  +..|+.+++++|++.    +.+++.++..|+|
T Consensus         7 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t   80 (236)
T 1ikn_D            7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA--VITNQPEIAEALLGA----GCDPELRDFRGNT   80 (236)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHH--HHTTCHHHHHCCCSC----CCCSCCCCTTCCC
T ss_pred             CCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCCcCCCCCC
Confidence            34456888888888888888888554    5667888888999988  888888888888874    6777888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccc
Q 037129           99 PLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSAN  178 (227)
Q Consensus        99 pl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~  178 (227)
                      |||+|+..|+.+++++|++.|........            ++..+..|.||||+|+..|+.+++++|++.|+++. ..+
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~  147 (236)
T 1ikn_D           81 PLHLACEQGCLASVGVLTQSCTTPHLHSI------------LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-AQE  147 (236)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSSCG------------GGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCC
T ss_pred             HHHHHHHcCCHHHHHHHHhcccchhHHHH------------hhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCC
Confidence            99999888888888888888764321100            12356778889999888888888888888888855 555


Q ss_pred             c-CCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          179 N-YGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       179 ~-~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      . .|.||||+|+..++.+++++|+++|++++.++..|.|||++|+.+|+
T Consensus       148 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~  196 (236)
T 1ikn_D          148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS  196 (236)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCc
Confidence            4 88889999888888889998888888888888888889888887765

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.2e-34  Score=224.37  Aligned_cols=96  Identities=14%  Similarity=0.024  Sum_probs=89.1

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      +.+|||.|+..|+.++|++|++.|.+++..+..|.||||+|  +..|+.+++++|++.    +.+++..+..|+||||+|
T Consensus        58 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~g~~~iv~~Ll~~----g~~~~~~~~~g~t~L~~A  131 (351)
T 3utm_A           58 KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNA--CSYGHYEVTELLLKH----GACVNAMDLWQFTPLHEA  131 (351)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH--HHCCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHH
Confidence            45679999999999999999999999999999999999999  999999999999986    777888999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhccccc
Q 037129          104 AKFGHSDIVRFLVERAKLTQHE  125 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~~~~~~~  125 (227)
                      +..|+.+++++|+++|......
T Consensus       132 ~~~~~~~~v~~Ll~~g~~~~~~  153 (351)
T 3utm_A          132 ASKNRVEVCSLLLSHGADPTLV  153 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHcCCHHHHHHHHHcCCCCccc
Confidence            9999999999999999876643

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=9.8e-35  Score=216.44  Aligned_cols=196  Identities=19%  Similarity=0.167  Sum_probs=158.9

Q ss_pred             CCHHHHHHHhcCCchHHHhhHh----hhhcccccc----CCCCchhhhhhhh---cccccccHHHHHHHHHhCC------
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAG----EEIKSLLTA----KTENTILHINIIS---QERENVSTKFVAEILEKCP------   86 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~----~~~~~~~~~----~~g~t~L~~a~~~---~~~~~~~~~~l~~~~~~~~------   86 (227)
                      ..++||.|+..|+.+.|+.|++    .+.+++..+    ..|.||||+|  +   ..|+.+++++|++.....+      
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   82 (260)
T 3jxi_A            5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKA--LLNLSAGRNDTIPILLDIAEKTGNMREFI   82 (260)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHH--HTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHH--HHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence            3468999999999997777776    788877555    5699999999  7   7899999999999876432      


Q ss_pred             -cccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHH
Q 037129           87 -LLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEI  165 (227)
Q Consensus        87 -~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~  165 (227)
                       ..++..+..|+||||+|+..|+.+++++|+++|+..+...........    .....+..|.||||+|+..|+.+++++
T Consensus        83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~----~~~~~~~~g~tpL~~A~~~g~~~~v~~  158 (260)
T 3jxi_A           83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPK----DEGGYFYFGELPLSLAACTNQPHIVHY  158 (260)
T ss_dssp             TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSS----CCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcc----cccccccCCCCHHHHHHHcCCHHHHHH
Confidence             334455668999999999999999999999999887652100000000    000001579999999999999999999


Q ss_pred             HHh---cCCCCCcccccCCCCHHHHHHHcCc---------HHHHHHHHhcCCCC-------cccCCCCCCHHHHHHHhcC
Q 037129          166 LTK---EDPDYPYSANNYGKTPLYMAAESRS---------SNMVLALLENRTSV-------SHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       166 ll~---~~~~~~~~~~~~~~t~l~~A~~~~~---------~~~v~~Ll~~g~~~-------~~~~~~g~t~l~~a~~~~~  226 (227)
                      |++   .|+++. .++..|.||||+|+..++         .+++++|+++|+++       +.+|..|.||||+|+.+|+
T Consensus       159 Ll~~~~~ga~~~-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  237 (260)
T 3jxi_A          159 LTENGHKQADLR-RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK  237 (260)
T ss_dssp             HHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HHhccccCCCCc-ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence            999   888854 889999999999998887         79999999999999       7799999999999999986

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.5e-35  Score=219.59  Aligned_cols=176  Identities=17%  Similarity=0.168  Sum_probs=139.6

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      +.+|||+|+..|+.++|++|++.|.+++..+..|.||||+|  +..++.+++++|++.    +..++. +..|.||||+|
T Consensus        92 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~-~~~g~t~L~~A  164 (285)
T 3d9h_A           92 HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNA--CVSGSWDCVNLLLQH----GASVQP-ESDLASPIHEA  164 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHH--HHHTCHHHHHHHHHT----TCCSSC-SCTTSCHHHHH
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCHHHHHHHHHHC----CCCCCC-CCCCCCHHHHH
Confidence            45679999999999999999999999998999999999999  999999999999986    444443 34588999999


Q ss_pred             HHcCCHHHHHHHHHhhhcccccchhhhhhHHHHH---------HHHH-----hccCCCCcHHHHHHhcCCHHHHHHHHhc
Q 037129          104 AKFGHSDIVRFLVERAKLTQHENEELESRVGAAW---------QIIR-----MTNKEKNTALHEAVCHQNVDVVEILTKE  169 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~---------~~~~-----~~~~~~~t~l~~A~~~~~~~~~~~ll~~  169 (227)
                      +..|+.+++++|+++|...+..+....+++....         .++.     ..+..|.||||+|+..++.+++++|++.
T Consensus       165 ~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  244 (285)
T 3d9h_A          165 ARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDF  244 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            9999999999999988877765555444443221         1111     1367899999999999999999999999


Q ss_pred             CCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhc-CCCCcc
Q 037129          170 DPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN-RTSVSH  209 (227)
Q Consensus       170 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~-g~~~~~  209 (227)
                      |+++ +.++..|.|||++|+  ++.+++++|+++ |+++..
T Consensus       245 gad~-~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          245 GADT-QAKNAEGKRPVELVP--PESPLAQLFLEREGASLPK  282 (285)
T ss_dssp             TCCT-TCCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred             CCCC-CCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence            9995 489999999999998  557999999997 777754

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=217.13  Aligned_cols=177  Identities=21%  Similarity=0.232  Sum_probs=137.1

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhhc--------cccccCCCCchhhhhhhhcccccc-cHHHHHHHHHhCCcccccccCC
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEIK--------SLLTAKTENTILHINIISQERENV-STKFVAEILEKCPLLLLQVNAK   95 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~~--------~~~~~~~g~t~L~~a~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~   95 (227)
                      .++|+.||..|++++|++|++.+.+        ++..+..|.|||+.|  +..+..+ +++.|++.    +.++|.++..
T Consensus        12 ~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a--~~~~~~~~~v~~Ll~~----Gadvn~~d~~   85 (269)
T 4b93_B           12 VEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQC--PKCAPAQKRLAKVPAS----GLGVNVTSQD   85 (269)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTCC------------------------------------------C----CCCTTCCCTT
T ss_pred             hhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHH--HHhCCHHHHHHHHHHC----CCCCCCcCCC
Confidence            3579999999999999999986654        235667889999999  8776643 56666653    8889999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCc
Q 037129           96 DDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPY  175 (227)
Q Consensus        96 g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~  175 (227)
                      |+||||+|+..|+.+++++|++.|+....                  .+..|.||+++|+..++.+++++|++.|+++ +
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~------------------~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n  146 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGANAGA------------------RNADQAVPLHLACQQGHFQVVKCLLDSNAKP-N  146 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCCTTC------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-C
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCcCc------------------cCCCCCCccccccccChHHHHHHHHHCCCCC-C
Confidence            99999999999999999999999988664                  6889999999999999999999999999995 4


Q ss_pred             ccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          176 SANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       176 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.+|+
T Consensus       147 ~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~  197 (269)
T 4b93_B          147 KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKH  197 (269)
T ss_dssp             CCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCC
Confidence            889999999999999999999999999999999999999999999999986

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.4e-34  Score=217.12  Aligned_cols=198  Identities=19%  Similarity=0.138  Sum_probs=158.5

Q ss_pred             ccCCHHHHHHHhcCCchHHHhhHhhh----hccc----cccCCCCchhhhhhhhcc---cccccHHHHHHHHHhCCc---
Q 037129           22 QQMDPIFFNAAAAGNSEPFKDMAGEE----IKSL----LTAKTENTILHINIISQE---RENVSTKFVAEILEKCPL---   87 (227)
Q Consensus        22 ~~~~~~l~~a~~~g~~~~v~~ll~~~----~~~~----~~~~~g~t~L~~a~~~~~---~~~~~~~~l~~~~~~~~~---   87 (227)
                      ....++||.|+..|+.++|+.|++.+    .+++    ..+..|.||||+|  +..   |+.+++++|++.+...+.   
T Consensus        11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A--~~~~~~g~~~~v~~Ll~~ga~~~~~~~   88 (273)
T 2pnn_A           11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA--MLNLHNGQNDTIALLLDVARKTDSLKQ   88 (273)
T ss_dssp             CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHH--HHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHH--HHHHhcCChHHHHHHHHhhccccchhH
Confidence            44567899999999999999999843    3332    3477999999999  765   999999999998754321   


Q ss_pred             ----ccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHH
Q 037129           88 ----LLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVV  163 (227)
Q Consensus        88 ----~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~  163 (227)
                          .+...+..|+||||+|+..|+.+++++|+++|+..+...........    .....+..|.||||+|+..|+.+++
T Consensus        89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~----~~~~~~~~g~tpL~~A~~~g~~~~v  164 (273)
T 2pnn_A           89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKT----KGRPGFYFGELPLSLAACTNQLAIV  164 (273)
T ss_dssp             HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSC----SSSCCCCSCBSHHHHHHHTTCHHHH
T ss_pred             HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccc----cccccccCCCCHHHHHHHcCCHHHH
Confidence                12235678999999999999999999999999887652210000000    0000113799999999999999999


Q ss_pred             HHHHh---cCCCCCcccccCCCCHHHHHHHcCc---------HHHHHHHHhcCCCCc-------ccCCCCCCHHHHHHHh
Q 037129          164 EILTK---EDPDYPYSANNYGKTPLYMAAESRS---------SNMVLALLENRTSVS-------HEGPNGKTALHAAAMR  224 (227)
Q Consensus       164 ~~ll~---~~~~~~~~~~~~~~t~l~~A~~~~~---------~~~v~~Ll~~g~~~~-------~~~~~g~t~l~~a~~~  224 (227)
                      ++|++   .|+++. .++..|.||||+|+..++         .+++++|+++|++++       .+|..|.||||+|+.+
T Consensus       165 ~~Ll~~~~~gad~~-~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~  243 (273)
T 2pnn_A          165 KFLLQNSWQPADIS-ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS  243 (273)
T ss_dssp             HHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             HHHHhcccCCCCce-eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence            99999   888854 889999999999999988         899999999999996       5899999999999998


Q ss_pred             cC
Q 037129          225 SY  226 (227)
Q Consensus       225 ~~  226 (227)
                      |+
T Consensus       244 g~  245 (273)
T 2pnn_A          244 GK  245 (273)
T ss_dssp             TC
T ss_pred             Ch
Confidence            86

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=9.1e-34  Score=213.38  Aligned_cols=199  Identities=18%  Similarity=0.174  Sum_probs=163.6

Q ss_pred             hccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHH
Q 037129           21 KQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPL  100 (227)
Q Consensus        21 ~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl  100 (227)
                      ...+.+|||.|+..|+.+++++|++.|.+++..+..|.||||+|  +..|+.+++++|++.    +.+++..+..|+|||
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L  109 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA--AIAGSVKLLKLFLSK----GADVNECDFYGFTAF  109 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHHTCHHHHHHHHHT----TCCTTCBCTTCCBHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCccCcccCCHH
Confidence            34456789999999999999999999999999999999999999  999999999999986    677888899999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcccccc----------hhhhhhHHH---------HHHHH-------HhccCCCCcHHHHH
Q 037129          101 HVAAKFGHSDIVRFLVERAKLTQHEN----------EELESRVGA---------AWQII-------RMTNKEKNTALHEA  154 (227)
Q Consensus       101 ~~A~~~~~~~~v~~Ll~~~~~~~~~~----------~~~~~~~~~---------~~~~~-------~~~~~~~~t~l~~A  154 (227)
                      |+|+..|+.+++++|+++|...+...          ....+++..         ...++       +..+..|.||||+|
T Consensus       110 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a  189 (285)
T 1wdy_A          110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA  189 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence            99999999999999999998776431          111111111         11112       23456788888888


Q ss_pred             HhcCC----HHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHh-cCCCCcccCCCCCCHHHHHHHhcC
Q 037129          155 VCHQN----VDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE-NRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       155 ~~~~~----~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      +..++    .+++++|++.|+++. ..+..|.||||+|+..++.+++++|++ .|++++.+|..|.||||+|+.+|+
T Consensus       190 ~~~~~~~~~~~i~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~  265 (285)
T 1wdy_A          190 LLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL  265 (285)
T ss_dssp             HHCSCTTTHHHHHHHHHHTTCCSS-CCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHccccchHHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCc
Confidence            88888    888888888888844 778888999999999999999999998 789999999999999999988775

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.6e-34  Score=226.38  Aligned_cols=201  Identities=23%  Similarity=0.248  Sum_probs=160.7

Q ss_pred             hhhhccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCC
Q 037129           18 REIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDD   97 (227)
Q Consensus        18 ~~~~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   97 (227)
                      ..+.. +.+|||.|+..|+.++|++|++.|.+++..+..|.||||+|  +..|+.+++++|++.    +.+++.++..|+
T Consensus         9 ~~~~~-g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~   81 (437)
T 1n11_A            9 GGGES-GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA--ARAGHTEVAKYLLQN----KAKVNAKAKDDQ   81 (437)
T ss_dssp             -------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHH--HHHTCHHHHHHHHHH----TCCSSCCCTTSC
T ss_pred             ccCCC-CCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHhC----CCCCCCCCCCCC
Confidence            33444 44569999999999999999999999998898999999999  999999999999987    677888999999


Q ss_pred             CHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHH---------HHH------HhccCCCCcHHHHHHhcCCHHH
Q 037129           98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAW---------QII------RMTNKEKNTALHEAVCHQNVDV  162 (227)
Q Consensus        98 tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~---------~~~------~~~~~~~~t~l~~A~~~~~~~~  162 (227)
                      ||||+|+..|+.+++++|+++|+.++.......+++....         .++      ...+..|.||||+|+..|+.++
T Consensus        82 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~  161 (437)
T 1n11_A           82 TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV  161 (437)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999999999999887665444333332221         111      1235567888888888888888


Q ss_pred             HHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          163 VEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       163 ~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      +++|++.|+++ +..+..|.||||.|+..++.+++++|+++|++++..+..|.||||+|+.+|+
T Consensus       162 v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  224 (437)
T 1n11_A          162 AELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ  224 (437)
T ss_dssp             HHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCC
Confidence            88888888874 3677788888888888888888888888888888888888888888888765

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.4e-34  Score=227.24  Aligned_cols=196  Identities=22%  Similarity=0.216  Sum_probs=153.3

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      ..+||+.|+..|+.+++++|++.|.+++..+..|.||||+|  +..++.+++++|++.    +..++..+..|.||||+|
T Consensus       179 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A  252 (437)
T 1n11_A          179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA--AKQNQVEVARSLLQY----GGSANAESVQGVTPLHLA  252 (437)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHH
Confidence            34567777887887888877777777777777777777777  777777777777764    555666777777777777


Q ss_pred             HHcCCHHHHHHHHHhhhcccccchhhhhhHHHHH---------HH------HHhccCCCCcHHHHHHhcCCHHHHHHHHh
Q 037129          104 AKFGHSDIVRFLVERAKLTQHENEELESRVGAAW---------QI------IRMTNKEKNTALHEAVCHQNVDVVEILTK  168 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~---------~~------~~~~~~~~~t~l~~A~~~~~~~~~~~ll~  168 (227)
                      +..|+.+++++|+++|...+..+....+++....         .+      ++.++..|.||||+|+..|+.+++++|++
T Consensus       253 ~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  332 (437)
T 1n11_A          253 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ  332 (437)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            7777777777777777665544433333322111         11      13467889999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       169 ~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      .|+++. .++..|.||||+|+..++.+++++|+++|++++..|.+|.|||++|+.+||
T Consensus       333 ~gad~n-~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~  389 (437)
T 1n11_A          333 HQADVN-AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY  389 (437)
T ss_dssp             TTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC
T ss_pred             cCCCCC-CCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCc
Confidence            999954 788999999999999999999999999999999999999999999999886

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=4.1e-34  Score=198.37  Aligned_cols=159  Identities=19%  Similarity=0.119  Sum_probs=147.0

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHV  102 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~  102 (227)
                      ...++|+.|+..|+.+++++|++.|.+++..+..|.||||+|  +. ++.+++++|++.    +.+++.++..|+||||+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A--~~-~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~   76 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM--KL-GNPEIARRLLLR----GANPDLKDRTGFAVIHD   76 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHC--CS-SCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHH--Hc-CcHHHHHHHHHc----CCCCCCCCCCCCCHHHH
Confidence            456789999999999999999999999999999999999999  88 999999999986    77788899999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCC
Q 037129          103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGK  182 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~  182 (227)
                      |+..|+.+++++|+++|...+.                  ++..|.||||+|+..++.+++++|++.|++..+..+..|.
T Consensus        77 A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~  138 (162)
T 1ihb_A           77 AARAGFLDTLQTLLEFQADVNI------------------EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD  138 (162)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCC------------------cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCC
Confidence            9999999999999999987654                  7889999999999999999999999999986668899999


Q ss_pred             CHHHHHHHcCcHHHHHHHHhcCCC
Q 037129          183 TPLYMAAESRSSNMVLALLENRTS  206 (227)
Q Consensus       183 t~l~~A~~~~~~~~v~~Ll~~g~~  206 (227)
                      ||||+|+..++.+++++|+++|++
T Consensus       139 t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          139 TACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             cHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999999986

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.9e-33  Score=217.68  Aligned_cols=197  Identities=20%  Similarity=0.239  Sum_probs=157.3

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHh-hhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHH
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAG-EEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLH  101 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~-~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~  101 (227)
                      ...++|+.|+..|+.+.|+.|+. .+.+++..|..|.||||+|  +..|+.+++++|++.    +.+++.++..|+||||
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~   96 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA--AGYNRVRIVQLLLQH----GADVHAKDKGGLVPLH   96 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHH
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCccCCCCCcHHH
Confidence            34567999999999999999998 4888888999999999999  999999999999986    7788899999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHH---------HHHH-------------------------------
Q 037129          102 VAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAW---------QIIR-------------------------------  141 (227)
Q Consensus       102 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~---------~~~~-------------------------------  141 (227)
                      +|+..|+.+++++|+++|...+..+....+++....         .++.                               
T Consensus        97 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~  176 (351)
T 3utm_A           97 NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE  176 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhh
Confidence            999999999999999999887765444333332211         1111                               


Q ss_pred             -----------------------------hccCCCCcHHHHHHhc---CCHHHHHHHHhcCCCCCcccccCCCCHHHHHH
Q 037129          142 -----------------------------MTNKEKNTALHEAVCH---QNVDVVEILTKEDPDYPYSANNYGKTPLYMAA  189 (227)
Q Consensus       142 -----------------------------~~~~~~~t~l~~A~~~---~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~  189 (227)
                                                   ..+..+.||||+|+..   +..+++++|++.|.++. ..+..|.||||+|+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~  255 (351)
T 3utm_A          177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN-EKNKDFMTPLHVAA  255 (351)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT-CCCTTCCCHHHHHH
T ss_pred             hcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC-CcCCCCCCHHHHHH
Confidence                                         1224566777777777   44677777777777743 66778888888888


Q ss_pred             HcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          190 ESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       190 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ..++.+++++|+++|++++.+|..|.||||+|+.+|+
T Consensus       256 ~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~  292 (351)
T 3utm_A          256 ERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGH  292 (351)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            8888888888888888888888888888888888775

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.4e-33  Score=217.70  Aligned_cols=194  Identities=21%  Similarity=0.212  Sum_probs=136.2

Q ss_pred             ccCCHHHHHHHhcCCchHHHhhHhhhhccccccC-CCCchhhhhhhhcccccccHHHHHHHHH-----------------
Q 037129           22 QQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAK-TENTILHINIISQERENVSTKFVAEILE-----------------   83 (227)
Q Consensus        22 ~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~-~g~t~L~~a~~~~~~~~~~~~~l~~~~~-----------------   83 (227)
                      ...+++|+.|+..|++++|++|++.|++++..+. .|.||||+|  +..|+.+++++|++.+.                 
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A--~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  100 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLRHGADPVLRKKNGATPFILAA  100 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHH--HHcCCHHHHHHHHHcCCchhhhccCCCchhHHHH
Confidence            3456789999999999999999999999996654 599999999  99999999999998632                 


Q ss_pred             ------------hCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHH
Q 037129           84 ------------KCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTAL  151 (227)
Q Consensus        84 ------------~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l  151 (227)
                                  ..+.+++..+..|+||||+|+..|+.+++++|+++|+..+........        ....+..|.|||
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~--------~~~~~~~g~T~L  172 (337)
T 4g8k_A          101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED--------QERLRKGGATAL  172 (337)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-------------CTTCSCCHH
T ss_pred             hcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccc--------cccccCCCCcHH
Confidence                        223456778889999999999999999999999999876542221100        111233344444


Q ss_pred             HHHHhcCCHHHHHHHH--------------------------------------hcCCCCCcccccCCCCHHHHHHHcCc
Q 037129          152 HEAVCHQNVDVVEILT--------------------------------------KEDPDYPYSANNYGKTPLYMAAESRS  193 (227)
Q Consensus       152 ~~A~~~~~~~~~~~ll--------------------------------------~~~~~~~~~~~~~~~t~l~~A~~~~~  193 (227)
                      |+|+..|+.+++++|+                                      +.|+++ +.++..|.||||+|+..++
T Consensus       173 ~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~  251 (337)
T 4g8k_A          173 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKH  251 (337)
T ss_dssp             HHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhh
Confidence            4444444444444444                                      333332 2445566677777777777


Q ss_pred             HHHHHHHHhc-CCCCcccCCCCCCHHHHHHHhcC
Q 037129          194 SNMVLALLEN-RTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       194 ~~~v~~Ll~~-g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      .+++++|++. |++++.+|..|.||||+|+.+|+
T Consensus       252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~  285 (337)
T 4g8k_A          252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL  285 (337)
T ss_dssp             HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred             hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCC
Confidence            7777777653 66777777777777777776665

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.2e-33  Score=208.81  Aligned_cols=196  Identities=18%  Similarity=0.176  Sum_probs=164.9

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccc-cCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLT-AKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHV  102 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~-~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~  102 (227)
                      +.++|+.|+..|++++|++|++.|.+++.. +..|.||||+|  +..|+.+++++|++.    +.+++.++..|.||||+
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~   78 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLRH----GADPVLRKKNGATPFLL   78 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHH
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH--HHcCCHHHHHHHHHc----CCCCcccCCCCCCHHHH
Confidence            356899999999999999999999998866 77899999999  999999999999986    67788899999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHH---------HHHH----------------hccCCCCcHHHHHHhc
Q 037129          103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAW---------QIIR----------------MTNKEKNTALHEAVCH  157 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~---------~~~~----------------~~~~~~~t~l~~A~~~  157 (227)
                      |+..|+.+++++|+++|...+..+....+++....         .++.                ..+..|.||||+|+..
T Consensus        79 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  158 (285)
T 1wdy_A           79 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK  158 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHc
Confidence            99999999999999999887765544443333221         1111                1156688999999999


Q ss_pred             CCHHHHHHHHhc-CCCCCcccccCCCCHHHHHHHcCc----HHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          158 QNVDVVEILTKE-DPDYPYSANNYGKTPLYMAAESRS----SNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       158 ~~~~~~~~ll~~-~~~~~~~~~~~~~t~l~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      |+.+++++|++. +.++ +..+..|.||||.|+..++    .+++++|+++|++++.++..|.||||+|+.+|+
T Consensus       159 ~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  231 (285)
T 1wdy_A          159 GHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH  231 (285)
T ss_dssp             TCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            999999999987 7764 4778889999999999888    889999999999999999999999999998876

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=5.3e-34  Score=219.19  Aligned_cols=190  Identities=14%  Similarity=0.089  Sum_probs=148.3

Q ss_pred             ccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccc---cccHHHHHHHHHhCCcccccccCCCCC
Q 037129           22 QQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERE---NVSTKFVAEILEKCPLLLLQVNAKDDT   98 (227)
Q Consensus        22 ~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~g~t   98 (227)
                      ..+.+|||+|+..|+.++|++|++.|.+++..+..|.||||+|  +..|+   .++++.|++.+.   ..++.++..|+|
T Consensus       129 ~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A--~~~g~~~~~~~~~~ll~~~~---~~~~~~d~~g~t  203 (327)
T 1sw6_A          129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA--VKSVNNYDSGTFEALLDYLY---PCLILEDSMNRT  203 (327)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHH--HHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCC
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH--HHhcccccHHHHHHHHHhhh---ccccCCCCCCCC
Confidence            3455679999999999999999999999999999999999999  99988   899999999863   458889999999


Q ss_pred             HHHHHHH----cCCHHHHHHHHHhhhcccccchh--hhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 037129           99 PLHVAAK----FGHSDIVRFLVERAKLTQHENEE--LESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD  172 (227)
Q Consensus        99 pl~~A~~----~~~~~~v~~Ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~  172 (227)
                      |||+|+.    .|+.+++++|++.+.........  ............+.++..|.||||.|+.      +++|++.+  
T Consensus       204 pLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~--  275 (327)
T 1sw6_A          204 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIANM--  275 (327)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHHT--
T ss_pred             HHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHhC--
Confidence            9999999    99999999999986532110000  0000000011134578899999999995      88999885  


Q ss_pred             CCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhc
Q 037129          173 YPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRS  225 (227)
Q Consensus       173 ~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  225 (227)
                       .+.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|
T Consensus       276 -~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          276 -LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             -TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             -CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence             3378899999999999999999999999999999999999999999999875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=6.7e-34  Score=199.25  Aligned_cols=168  Identities=19%  Similarity=0.125  Sum_probs=149.5

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhhc-cccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEIK-SLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      .++||.|+..|+.+.+++|++.+.+ ++..+..|.||||+|  +..++.+++++|++.    +.+++..+..|.||||+|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A   76 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA--SAFGEIETVRFLLEW----GADPHILAKERESALSLA   76 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHH--HHTTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCchhhcccCCCHHHHH
Confidence            4579999999999999999998766 668888999999999  999999999999987    677888999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCC
Q 037129          104 AKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKT  183 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t  183 (227)
                      +..|+.+++++|+++|...+.                  .+..|.||||+|+..++.+++++|++.|+++ +..+..|.|
T Consensus        77 ~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t  137 (172)
T 3v30_A           77 STGGYTDIVGLLLERDVDINI------------------YDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYT  137 (172)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred             HHCCCHHHHHHHHHcCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCC
Confidence            999999999999999988654                  7889999999999999999999999999995 478899999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCH
Q 037129          184 PLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA  217 (227)
Q Consensus       184 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  217 (227)
                      ||++|+..++.+++++|+++|+++...+..|.||
T Consensus       138 ~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          138 PMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            9999999999999999999999999988888876

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.8e-33  Score=194.35  Aligned_cols=143  Identities=24%  Similarity=0.341  Sum_probs=135.6

Q ss_pred             chhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHH
Q 037129           59 TILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQ  138 (227)
Q Consensus        59 t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  138 (227)
                      +.|+.|  +..|+.++|+.|++.    +.+++.+|..|+||||+|+..++.+++++|++.|..++.              
T Consensus         6 ~~L~~A--a~~G~~~~v~~Ll~~----Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~--------------   65 (169)
T 4gpm_A            6 KRLIEA--AENGNKDRVKDLIEN----GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA--------------   65 (169)
T ss_dssp             HHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--------------
T ss_pred             HHHHHH--HHcCCHHHHHHHHHC----CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhh--------------
Confidence            579999  999999999999986    788999999999999999999999999999999998765              


Q ss_pred             HHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHH
Q 037129          139 IIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTAL  218 (227)
Q Consensus       139 ~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l  218 (227)
                          ++..|.||||+|+..|+.+++++|++.|++++ .++..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        66 ----~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL  140 (169)
T 4gpm_A           66 ----KDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPL  140 (169)
T ss_dssp             ----CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ----hccCCCCHHHHHHHcCCHHHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence                78999999999999999999999999999954 8899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q 037129          219 HAAAMRSY  226 (227)
Q Consensus       219 ~~a~~~~~  226 (227)
                      ++|+.+|+
T Consensus       141 ~~A~~~g~  148 (169)
T 4gpm_A          141 DLAREHGN  148 (169)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHcCC
Confidence            99999886

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=7.3e-33  Score=203.56  Aligned_cols=176  Identities=20%  Similarity=0.210  Sum_probs=114.1

Q ss_pred             HHHHHHhcCCchHHHhhHhhhhccc-cccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHH
Q 037129           27 IFFNAAAAGNSEPFKDMAGEEIKSL-LTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAK  105 (227)
Q Consensus        27 ~l~~a~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~  105 (227)
                      +|+.|+..|+.++|++|++.+.+++ ..+..|.||||+|  +..++.+++++|++.    +.+++.++..|.||||+|+.
T Consensus        45 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l~~A~~  118 (240)
T 3eu9_A           45 LLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA--TRQGHLSMVVQLMKY----GADPSLIDGEGCSCIHLAAQ  118 (240)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH--HHcCCHHHHHHHHHc----CCCCcccCCCCCCHHHHHHH
Confidence            3444444444444444444444433 2222244444444  444444444444442    33344444444444444444


Q ss_pred             cCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCC-HHHHHHHHhcCCCCCcccccCCCCH
Q 037129          106 FGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQN-VDVVEILTKEDPDYPYSANNYGKTP  184 (227)
Q Consensus       106 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~-~~~~~~ll~~~~~~~~~~~~~~~t~  184 (227)
                      .|+.+++++|+++|...+                  ..+..|.||||+|+..+. .+++++|++.++++.......|.||
T Consensus       119 ~~~~~~~~~Ll~~~~~~~------------------~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~  180 (240)
T 3eu9_A          119 FGHTSIVAYLIAKGQDVD------------------MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTA  180 (240)
T ss_dssp             TTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCH
T ss_pred             cCHHHHHHHHHhcCCCcc------------------ccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcH
Confidence            444444444444444332                  366788899999986655 7888888888888653333489999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          185 LYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       185 l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ||.|+..++.+++++|+++|++++.++..|.|||++|+.+|+
T Consensus       181 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  222 (240)
T 3eu9_A          181 LHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN  222 (240)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc
Confidence            999999999999999999999999999999999999999886

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.6e-33  Score=202.78  Aligned_cols=169  Identities=19%  Similarity=0.178  Sum_probs=151.8

Q ss_pred             cCCchHHHhhHhhhhcccc-ccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHH
Q 037129           34 AGNSEPFKDMAGEEIKSLL-TAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIV  112 (227)
Q Consensus        34 ~g~~~~v~~ll~~~~~~~~-~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v  112 (227)
                      .|+.+++++|++.|.+++. .+..|.||||+|  +..|+.+++++|++.    +.+++..+..|+||||+|+..|+.+++
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v   74 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQTDRTGETALHLA--ARYSRSDAAKRLLEA----SADANIQDNMGRTPLHAAVSADAQGVF   74 (223)
T ss_dssp             ----CCEETTEETTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCcHHHHHHHHHcCCCcccccCCCCCchHHHH--HHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            3788999999999999874 478999999999  999999999999986    677888999999999999999999999


Q ss_pred             HHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcC
Q 037129          113 RFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESR  192 (227)
Q Consensus       113 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~  192 (227)
                      ++|++.+....                 +..+..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..+
T Consensus        75 ~~Ll~~~~~~~-----------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~  136 (223)
T 2f8y_A           75 QILIRNRATDL-----------------DARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVN  136 (223)
T ss_dssp             HHHHHBTTSCT-----------------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTT
T ss_pred             HHHHHcCCCCc-----------------ccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-CcCCCCCcHHHHHHHcC
Confidence            99999987322                 2367889999999999999999999999999854 78889999999999999


Q ss_pred             cHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          193 SSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       193 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      +.+++++|+++|++++.++..|.||||+|+.+|+
T Consensus       137 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  170 (223)
T 2f8y_A          137 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGS  170 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCC
Confidence            9999999999999999999999999999999876

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=212.20  Aligned_cols=176  Identities=20%  Similarity=0.202  Sum_probs=160.2

Q ss_pred             HHHHHHHhcCCchHHHhhHhhhhc--cccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCc-ccccccCCCCCHHHH
Q 037129           26 PIFFNAAAAGNSEPFKDMAGEEIK--SLLTAKTENTILHINIISQERENVSTKFVAEILEKCPL-LLLQVNAKDDTPLHV  102 (227)
Q Consensus        26 ~~l~~a~~~g~~~~v~~ll~~~~~--~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~g~tpl~~  102 (227)
                      +++|.|+..|+++.++.+++.+.+  ++..|..|.||||+|  +..|+.+++++|++.    +. +++..+..|+||||+
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~~g~tpL~~  151 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYS--VSHANFPVVQQLLDS----GVCKVDKQNRAGYSPIML  151 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----SCCCTTCCCTTSCCHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHH--HHCCCHHHHHHHHHC----CCCcCCCCCCCCCCHHHH
Confidence            346788999999999999986555  668999999999999  999999999999986    44 788899999999999


Q ss_pred             HH-----HcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCccc
Q 037129          103 AA-----KFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSA  177 (227)
Q Consensus       103 A~-----~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~  177 (227)
                      |+     ..++.+++++|++.|.....                  .+..|.||||+|+..|+.+++++|++.|+++. ..
T Consensus       152 a~~~~~~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n-~~  212 (276)
T 4hbd_A          152 TALATLKTQDDIETVLQLFRLGNINAK------------------ASQAGQTALMLAVSHGRVDVVKALLACEADVN-VQ  212 (276)
T ss_dssp             GGGCCCCSHHHHHHHHHHHHHSCTTCC------------------CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CC
T ss_pred             HHHHHhhhhhhHHHHHHHHHcCCCccc------------------cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CC
Confidence            99     66889999999999976554                  67889999999999999999999999999954 88


Q ss_pred             ccCCCCHHHHHHHcCcHHHHHHHHh-cCCCCcccCCCCCCHHHHHHHhcC
Q 037129          178 NNYGKTPLYMAAESRSSNMVLALLE-NRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       178 ~~~~~t~l~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      +..|.||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+.+|+
T Consensus       213 d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~  262 (276)
T 4hbd_A          213 DDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQ  262 (276)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCC
Confidence            9999999999999999999999999 899999999999999999999886

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=3.1e-32  Score=194.09  Aligned_cols=150  Identities=19%  Similarity=0.125  Sum_probs=89.8

Q ss_pred             cccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhh
Q 037129           52 LTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELES  131 (227)
Q Consensus        52 ~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  131 (227)
                      ..|..|.||||+|  +..|+.+++++|++.    +.+++..+..|+||||+|+..|+.+++++|+++|...+.       
T Consensus        30 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------   96 (192)
T 2rfm_A           30 YRDSYNRTPLMVA--CMLGMENAIDKLVEN----FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT-------   96 (192)
T ss_dssp             CCCTTCCCHHHHH--HHHTCGGGHHHHHHH----HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-------
T ss_pred             CcCCCCCCHHHHH--HHcCCHHHHHHHHHh----ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCC-------
Confidence            4555666666666  666666666666654    334455555666666666666666666666666555432       


Q ss_pred             hHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccC
Q 037129          132 RVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEG  211 (227)
Q Consensus       132 ~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~  211 (227)
                                 .+..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..++.+++++|+++|++++.+|
T Consensus        97 -----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  164 (192)
T 2rfm_A           97 -----------KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLELGADISARD  164 (192)
T ss_dssp             -----------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC
T ss_pred             -----------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence                       45556666666666666666666666665532 555566666666666666666666666666666666


Q ss_pred             CCCCCHHHHHHHhcC
Q 037129          212 PNGKTALHAAAMRSY  226 (227)
Q Consensus       212 ~~g~t~l~~a~~~~~  226 (227)
                      ..|.|||++|+.+|+
T Consensus       165 ~~g~t~l~~A~~~~~  179 (192)
T 2rfm_A          165 LTGLTAEASARIFGR  179 (192)
T ss_dssp             TTSCBHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHhCc
Confidence            666666666665554

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=2e-32  Score=191.22  Aligned_cols=158  Identities=21%  Similarity=0.291  Sum_probs=145.2

Q ss_pred             ccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHH
Q 037129           22 QQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLH  101 (227)
Q Consensus        22 ~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~  101 (227)
                      ....++|+.|+..|+.++|++|++.|.+++..+..|.||||+|  +..++.+++++|++.    +.+++..+..|+||||
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~   85 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLA--AFNGHLEIVEVLLKN----GADVNAVDHAGMTPLR   85 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCccCCCCCCHHH
Confidence            3446689999999999999999999999999999999999999  999999999999986    6778889999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCC
Q 037129          102 VAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYG  181 (227)
Q Consensus       102 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~  181 (227)
                      +|+..|+.+++++|+++|...+.                  .+..|.||||+|+..++.+++++|++.|+++ +..+..|
T Consensus        86 ~A~~~~~~~~~~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g  146 (169)
T 2y1l_E           86 LAALFGHLEIVEVLLKNGADVNA------------------NDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFG  146 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTS
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCC
Confidence            99999999999999999988654                  6889999999999999999999999999995 4788999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhcC
Q 037129          182 KTPLYMAAESRSSNMVLALLENR  204 (227)
Q Consensus       182 ~t~l~~A~~~~~~~~v~~Ll~~g  204 (227)
                      .|||++|+..++.+++++|++.|
T Consensus       147 ~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          147 KTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999999999999999999876

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.9e-32  Score=199.68  Aligned_cols=176  Identities=22%  Similarity=0.189  Sum_probs=159.3

Q ss_pred             HHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccc-cccCCCCCHHHHHH
Q 037129           26 PIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLL-QVNAKDDTPLHVAA  104 (227)
Q Consensus        26 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~g~tpl~~A~  104 (227)
                      ++|+.|+..|+.+++++|++.|.+++..+..|.||||+|  +..|+.+++++|++.    +..++ ..+..|.||||+|+
T Consensus        11 ~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----~~~~~~~~~~~~~t~L~~A~   84 (240)
T 3eu9_A           11 WDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWA--AINNRIDLVKYYISK----GAIVDQLGGDLNSTPLHWAT   84 (240)
T ss_dssp             CCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCBTTTTBCHHHHHH
T ss_pred             hHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHH--HHhCCHHHHHHHHHc----CCcchhhcCCcCCChhHHHH
Confidence            459999999999999999999999999999999999999  999999999999986    44444 34455999999999


Q ss_pred             HcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCH
Q 037129          105 KFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTP  184 (227)
Q Consensus       105 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~  184 (227)
                      ..|+.+++++|++.|...+.                  .+..|.||||+|+..++.+++++|++.|+++. ..+..|.||
T Consensus        85 ~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~g~t~  145 (240)
T 3eu9_A           85 RQGHLSMVVQLMKYGADPSL------------------IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTP  145 (240)
T ss_dssp             HHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCH
T ss_pred             HcCCHHHHHHHHHcCCCCcc------------------cCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc-ccCCCCCcH
Confidence            99999999999999988654                  67889999999999999999999999999854 788899999


Q ss_pred             HHHHHHcCc-HHHHHHHHhcCCCCcccCC-CCCCHHHHHHHhcC
Q 037129          185 LYMAAESRS-SNMVLALLENRTSVSHEGP-NGKTALHAAAMRSY  226 (227)
Q Consensus       185 l~~A~~~~~-~~~v~~Ll~~g~~~~~~~~-~g~t~l~~a~~~~~  226 (227)
                      ||.|+..+. .+++++|++.|++++..+. .|.||||+|+.+|+
T Consensus       146 l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~  189 (240)
T 3eu9_A          146 LMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN  189 (240)
T ss_dssp             HHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTC
T ss_pred             HHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCC
Confidence            999997665 8999999999999999997 89999999999876

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.3e-32  Score=202.24  Aligned_cols=178  Identities=21%  Similarity=0.165  Sum_probs=157.8

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhC--CcccccccCCCCCHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKC--PLLLLQVNAKDDTPLH  101 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~g~tpl~  101 (227)
                      +.+|||.|+..|+.++|++|++.|.+++..+..|.||||+|  +..++.+++++|++.....  ...++..+..|+||||
T Consensus        45 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~  122 (236)
T 1ikn_D           45 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA--CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH  122 (236)
T ss_dssp             CCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH--HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHH
Confidence            45679999999999999999999999999999999999999  9999999999999864321  2336778889999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccC-CCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccC
Q 037129          102 VAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNK-EKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNY  180 (227)
Q Consensus       102 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~  180 (227)
                      +|+..|+.+++++|+++|...+.                  .+. .|.||||+|+..|+.+++++|++.|+++ +..+..
T Consensus       123 ~A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~  183 (236)
T 1ikn_D          123 LASIHGYLGIVELLVSLGADVNA------------------QEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQ  183 (236)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTC------------------CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCC------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccCC
Confidence            99999999999999999988765                  565 8999999999999999999999999995 488999


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCCc--ccCCCCCCHHHHHH
Q 037129          181 GKTPLYMAAESRSSNMVLALLENRTSVS--HEGPNGKTALHAAA  222 (227)
Q Consensus       181 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~~a~  222 (227)
                      |.|||++|+..++.+++++|+++|++..  ..+..|.||.+.+.
T Consensus       184 g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          184 GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES  227 (236)
T ss_dssp             CCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-
T ss_pred             CCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhc
Confidence            9999999999999999999999999876  67778888765443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=1.9e-32  Score=195.18  Aligned_cols=157  Identities=17%  Similarity=0.075  Sum_probs=146.4

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHV  102 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~  102 (227)
                      .+.+|||.|+..|+.+++++|++.+.+++..+..|.||||+|  +..++.+++++|++.    +.+++.++..|+||||+
T Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           34 YNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWA--VKNNRLGIAEKLLSK----GSNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             TCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHH----TCCTTCCCTTSCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCcHHHH
Confidence            345679999999999999999999999999999999999999  999999999999997    67788899999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCC
Q 037129          103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGK  182 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~  182 (227)
                      |+..|+.+++++|+++|...+.                  ++..|.||||+|+..++.+++++|++.|+++. ..+..|.
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~  168 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANVND------------------RNLEGETPLIVASKYGRSEIVKKLLELGADIS-ARDLTGL  168 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSC------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSC
T ss_pred             HHHcCCHHHHHHHHHCCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCC
Confidence            9999999999999999988765                  78899999999999999999999999999954 8899999


Q ss_pred             CHHHHHHHcCcHHHHHHHHhcC
Q 037129          183 TPLYMAAESRSSNMVLALLENR  204 (227)
Q Consensus       183 t~l~~A~~~~~~~~v~~Ll~~g  204 (227)
                      |||++|+..++.+++++|+++|
T Consensus       169 t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          169 TAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHhCcHHHHHHHHhcc
Confidence            9999999999999999999875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=2.1e-32  Score=190.74  Aligned_cols=160  Identities=16%  Similarity=0.086  Sum_probs=144.8

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      ..+|||.|+..|+.+++++|++.+.+++..+..|.||||+|  +..++.+++++|++.    +.+++..+..|.||||+|
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A   76 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWA--AAHGQIAVVEFLLQN----GADPQLLGKGRESALSLA   76 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHH
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHH--HHCCCHHHHHHHHHc----CCCCCCcCCCCCcHHHHH
Confidence            45679999999999999999999998888999999999999  999999999999986    677888899999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCC
Q 037129          104 AKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKT  183 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t  183 (227)
                      +..|+.+++++|+++|...+.                  .+..|.||||+|+..++.+++++|++.|+++ +..+..|.|
T Consensus        77 ~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t  137 (167)
T 3v31_A           77 CSKGYTDIVKMLLDCGVDVNE------------------YDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYN  137 (167)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred             HHcCCHHHHHHHHHCCCCCCc------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCC
Confidence            999999999999999988654                  6888999999999999999999999999985 478899999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCc
Q 037129          184 PLYMAAESRSSNMVLALLENRTSVS  208 (227)
Q Consensus       184 ~l~~A~~~~~~~~v~~Ll~~g~~~~  208 (227)
                      ||++|+..++.+++++|++++.++.
T Consensus       138 ~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          138 SMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999876543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.9e-32  Score=213.12  Aligned_cols=214  Identities=17%  Similarity=0.182  Sum_probs=164.5

Q ss_pred             CcccccccccchhhhccCCHHHHHHHhcCCchHHHhhHhhhhcccccc-CCCCchhhhhhhhcccccccHHHHHHH----
Q 037129            7 EIEEAPLLDSNREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTA-KTENTILHINIISQERENVSTKFVAEI----   81 (227)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~-~~g~t~L~~a~~~~~~~~~~~~~l~~~----   81 (227)
                      +++..+......++..+ .++||.|+..| .++++.|+..+++  ..+ ..|.||||+|  +..|+.+++++|+..    
T Consensus        78 ~~~~~~~~~~~~~~~~g-~t~L~~Aa~~~-~~~~~~L~~~~~n--~~d~~~g~t~Lh~A--a~~g~~~~v~~Ll~~~~~~  151 (373)
T 2fo1_E           78 DFNHTNLQIPTEPEPES-PIKLHTEAAGS-YAITEPITRESVN--IIDPRHNRTVLHWI--ASNSSAEKSEDLIVHEAKE  151 (373)
T ss_dssp             ----------------C-CCHHHHHHHSS-SCCCSCCSTTTTT--TCCCSSCCCHHHHH--HCTTCCSCCTTHHHHHHHH
T ss_pred             cccccccccccCCCCCC-ccHHHHHhcCC-chHHHHhcccccc--ccCCcCCCCHHHHH--HHCCCHHHHHHHHHHHHHH
Confidence            33444444444444444 55699999955 5888888765444  666 7899999999  999999999998742    


Q ss_pred             HHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHH------------------HHHHhc
Q 037129           82 LEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAW------------------QIIRMT  143 (227)
Q Consensus        82 ~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~  143 (227)
                      +...+.+++.+|..|+||||+|+..|+.+++++|+++|+..+..+....+++....                  ..++..
T Consensus       152 ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  231 (373)
T 2fo1_E          152 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL  231 (373)
T ss_dssp             HHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC
T ss_pred             HHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhc
Confidence            33568889999999999999999999999999999999988765554444433221                  122345


Q ss_pred             cCCCCcHHHHHHhcC---CHHHHHHHHhcCCCCCc-------ccccCCCCHHHHHHHcCcHHHHHHHHhcC-CCCcccCC
Q 037129          144 NKEKNTALHEAVCHQ---NVDVVEILTKEDPDYPY-------SANNYGKTPLYMAAESRSSNMVLALLENR-TSVSHEGP  212 (227)
Q Consensus       144 ~~~~~t~l~~A~~~~---~~~~~~~ll~~~~~~~~-------~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g-~~~~~~~~  212 (227)
                      +..|.||||+|+..+   +.+++++|++.|+++..       ..+..|.||||+|+..++.+++++|+++| ++++.+|.
T Consensus       232 d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~  311 (373)
T 2fo1_E          232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE  311 (373)
T ss_dssp             CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCT
T ss_pred             CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCC
Confidence            788999999999988   89999999999988642       25668999999999999999999999876 99999999


Q ss_pred             CCCCHHHHHHHhcC
Q 037129          213 NGKTALHAAAMRSY  226 (227)
Q Consensus       213 ~g~t~l~~a~~~~~  226 (227)
                      .|.||||+|+.+|+
T Consensus       312 ~g~TpL~~A~~~g~  325 (373)
T 2fo1_E          312 DGKTPIMLAAQEGR  325 (373)
T ss_dssp             TCCCHHHHHHHHTC
T ss_pred             CCCCHHHHHHHcCC
Confidence            99999999999886

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.98  E-value=1.7e-31  Score=206.02  Aligned_cols=201  Identities=13%  Similarity=0.069  Sum_probs=157.2

Q ss_pred             hhhhccCCHHHHHHHhcCCchHHHhhHhhhhccc---------------------------------cccCCCCchhhhh
Q 037129           18 REIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSL---------------------------------LTAKTENTILHIN   64 (227)
Q Consensus        18 ~~~~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~---------------------------------~~~~~g~t~L~~a   64 (227)
                      ..+...+.+|||+|+..|+.++|++|++.|.+++                                 ..+..|.||||+|
T Consensus        53 ~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A  132 (337)
T 4g8k_A           53 FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA  132 (337)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHH
T ss_pred             ccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHH
Confidence            3444556678999999999999999999776543                                 4567889999999


Q ss_pred             hhhcccccccHHHHHHHHHhCC------cccccccCCCCCHHHHHHHcCCHHHHHHHHHh-hhcccccchhhhhhHHH--
Q 037129           65 IISQERENVSTKFVAEILEKCP------LLLLQVNAKDDTPLHVAAKFGHSDIVRFLVER-AKLTQHENEELESRVGA--  135 (227)
Q Consensus        65 ~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~--  135 (227)
                        +..++.++++++++.+....      ......+..|.||||+|+..|+.+++++|+++ |..++..+.........  
T Consensus       133 --~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~  210 (337)
T 4g8k_A          133 --AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL  210 (337)
T ss_dssp             --HHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH
T ss_pred             --HHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHH
Confidence              99999999999998632111      11223456789999999999999999999965 77666544433222211  


Q ss_pred             ----------HHHH-------HHhccCCCCcHHHHHHhcCCHHHHHHHHhc-CCCCCcccccCCCCHHHHHHHcCcHHHH
Q 037129          136 ----------AWQI-------IRMTNKEKNTALHEAVCHQNVDVVEILTKE-DPDYPYSANNYGKTPLYMAAESRSSNMV  197 (227)
Q Consensus       136 ----------~~~~-------~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t~l~~A~~~~~~~~v  197 (227)
                                ...+       ++.++..|.||||+|+..++.++++.|++. +.+ .+.++..|.||||+|+..|+.+++
T Consensus       211 ~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv  289 (337)
T 4g8k_A          211 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIA  289 (337)
T ss_dssp             HHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             HHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCCHHHH
Confidence                      1111       234677899999999999999999999986 566 458899999999999999999999


Q ss_pred             HHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          198 LALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       198 ~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ++|+++|++++.+     +||++|+.+|+
T Consensus       290 ~~Ll~~GAd~n~~-----~~L~~A~~~~~  313 (337)
T 4g8k_A          290 ELLCKRGASTDCG-----DLVMTARRNYD  313 (337)
T ss_dssp             HHHHTTSCSSTTC-----CHHHHHHHTTC
T ss_pred             HHHHHCCCCCCCC-----CHHHHHHHcCC
Confidence            9999999999764     69999999886

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.98  E-value=3.1e-31  Score=184.77  Aligned_cols=146  Identities=23%  Similarity=0.254  Sum_probs=137.4

Q ss_pred             CCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHH
Q 037129           56 TENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGA  135 (227)
Q Consensus        56 ~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  135 (227)
                      .|.||||.|  +..|+.+++++|++.    +..++.++..|+||||+|+..|+.+++++|+++|...+.           
T Consensus         2 ~~~t~L~~A--~~~g~~~~v~~ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------   64 (167)
T 3v31_A            2 ANSLSVHQL--AAQGEMLYLATRIEQ----ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-----------   64 (167)
T ss_dssp             TTCCCHHHH--HHTTCHHHHHHHHHH----SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-----------
T ss_pred             CCcchHHHH--HHCCCHHHHHHHHHc----CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-----------
Confidence            578999999  999999999999987    677889999999999999999999999999999988654           


Q ss_pred             HHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCC
Q 037129          136 AWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGK  215 (227)
Q Consensus       136 ~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  215 (227)
                             .+..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..++.+++++|+++|++++.++..|.
T Consensus        65 -------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  136 (167)
T 3v31_A           65 -------LGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY  136 (167)
T ss_dssp             -------CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             -------cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence                   67899999999999999999999999999954 7889999999999999999999999999999999999999


Q ss_pred             CHHHHHHHhcC
Q 037129          216 TALHAAAMRSY  226 (227)
Q Consensus       216 t~l~~a~~~~~  226 (227)
                      |||++|+.+|+
T Consensus       137 t~l~~A~~~~~  147 (167)
T 3v31_A          137 NSMDLAVALGY  147 (167)
T ss_dssp             CHHHHHHHHTC
T ss_pred             CHHHHHHHcCc
Confidence            99999999886

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.98  E-value=7.3e-32  Score=190.10  Aligned_cols=165  Identities=21%  Similarity=0.183  Sum_probs=152.0

Q ss_pred             CHHHHHHHhcCCchHHHhhHhh-hhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGE-EIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      .++|+.|+..|+.+.|++|++. +.+++..+..|.||||+|  +..++.+++++|++.    +.+++..+..|+||||+|
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A   79 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA--CREGRSAVVEMLIMR----GARINVMNRGDDTPLHLA   79 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHH--HHcCcHHHHHHHHHc----CCCCCCcCCCCCCHHHHH
Confidence            3459999999999999999996 667778999999999999  999999999999986    778889999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCC
Q 037129          104 AKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKT  183 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t  183 (227)
                      +..|+.+++++|+++|...+.                  .+..|.||||+|+..++.+++++|++.|+++ +..+..|.|
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~------------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t  140 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADINA------------------VNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEM  140 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCC
T ss_pred             HHcCCHHHHHHHHHcCCCCCc------------------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCC
Confidence            999999999999999988664                  7889999999999999999999999999995 488999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 037129          184 PLYMAAESRSSNMVLALLENRTSVSHEGPNG  214 (227)
Q Consensus       184 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  214 (227)
                      ||++|+..++.+++++|+++|++++..+..+
T Consensus       141 pl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          141 PVDKAKAPLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             GGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             cHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence            9999999999999999999999999877655

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=7.6e-31  Score=188.09  Aligned_cols=157  Identities=20%  Similarity=0.161  Sum_probs=144.6

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      +.+|||.|+..|+.++|++|++.|.+++..+..|.||||+|  +..++.+++++|++.   .+.+++..+..|.||||+|
T Consensus        39 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A--~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A  113 (201)
T 3hra_A           39 GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA--GAQGRTEILAYMLKH---ATPDLNKHNRYGGNALIPA  113 (201)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHH---SCCCTTCCCTTSCCSHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHhc---cCcccccccCCCCcHHHHH
Confidence            45679999999999999999999999999999999999999  999999999999964   3667888999999999999


Q ss_pred             HHcCCHHHHHHHHHhh-hcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCC-----HHHHHHHHhcCCCCCccc
Q 037129          104 AKFGHSDIVRFLVERA-KLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQN-----VDVVEILTKEDPDYPYSA  177 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~-----~~~~~~ll~~~~~~~~~~  177 (227)
                      +..|+.+++++|+++| ...+.                  ++..|.||||+|+..+.     .+++++|++.|+++ +..
T Consensus       114 ~~~~~~~~v~~Ll~~g~~~~~~------------------~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~-~~~  174 (201)
T 3hra_A          114 AEKGHIDNVKLLLEDGREDIDF------------------QNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ-SIK  174 (201)
T ss_dssp             HHTTCHHHHHHHHHHCCCCTTC------------------CCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT-TCC
T ss_pred             HHcCCHHHHHHHHHcCCCCcCC------------------CCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC-Ccc
Confidence            9999999999999999 55443                  78899999999999988     99999999999995 488


Q ss_pred             ccCCCCHHHHHHHcCcHHHHHHHHhcC
Q 037129          178 NNYGKTPLYMAAESRSSNMVLALLENR  204 (227)
Q Consensus       178 ~~~~~t~l~~A~~~~~~~~v~~Ll~~g  204 (227)
                      +..|.||||+|+..++.+++++|+++|
T Consensus       175 ~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          175 DNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            999999999999999999999999987

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=6.4e-31  Score=180.64  Aligned_cols=150  Identities=25%  Similarity=0.290  Sum_probs=113.0

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAA  104 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~  104 (227)
                      .++|+.|+..|+.++|++|++.|.+++ .+..|.||||+|  +..|+.+++++|++.    +.+++.++..|+||||+|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~   75 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLA--AQYGHFSTTEVLLRA----GVSRDARTKVDRTPLHMAA   75 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHH--HHHTCHHHHHHHHTT----TCCTTCCCTTCCCHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHH
Confidence            356788888888888888888777654 455777888888  777888877777764    5666777777888888888


Q ss_pred             HcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCH
Q 037129          105 KFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTP  184 (227)
Q Consensus       105 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~  184 (227)
                      ..|+.+++++|+++|...+.                  ++..|.||||+|+..++.+++++|++.|+++. ..+..|.||
T Consensus        76 ~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~  136 (153)
T 1awc_B           76 SEGHANIVEVLLKHGADVNA------------------KDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTA  136 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCH
T ss_pred             HcChHHHHHHHHHcCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCH
Confidence            88888888888877776543                  56777788888888788888888887777743 667777788


Q ss_pred             HHHHHHcCcHHHHHHH
Q 037129          185 LYMAAESRSSNMVLAL  200 (227)
Q Consensus       185 l~~A~~~~~~~~v~~L  200 (227)
                      |++|+..++.+++++|
T Consensus       137 l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          137 FDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            8888888887777765

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=6.8e-32  Score=210.37  Aligned_cols=153  Identities=18%  Similarity=0.147  Sum_probs=112.0

Q ss_pred             ccCCCCchhhhhhhhccc--ccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhh
Q 037129           53 TAKTENTILHINIISQER--ENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELE  130 (227)
Q Consensus        53 ~~~~g~t~L~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  130 (227)
                      .+..|.||||+|  +..|  +.+++++|++.    +.+++..+..|+||||+|+..|+.+++++|+++|.......    
T Consensus       134 ~~~~g~t~L~~A--~~~g~~~~~~v~~Ll~~----ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----  203 (364)
T 3ljn_A          134 KHCKGQTALHWC--VGLGPEYLEMIKILVQL----GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLR----  203 (364)
T ss_dssp             EEESCCCHHHHH--HHSCGGGHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCC----
T ss_pred             CCCCCCCHHHHH--HHcCCchHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc----
Confidence            555666666666  6666  66666666665    45556666666666666666666666666666665511000    


Q ss_pred             hhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcc-
Q 037129          131 SRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSH-  209 (227)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~-  209 (227)
                               ++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++|++++. 
T Consensus       204 ---------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~  273 (364)
T 3ljn_A          204 ---------LDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQ  273 (364)
T ss_dssp             ---------TTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHH
T ss_pred             ---------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhh
Confidence                     1236788999999999999999999999999995 48899999999999999999999999999877644 


Q ss_pred             -----------cCCCCCCHHHHHHHhc
Q 037129          210 -----------EGPNGKTALHAAAMRS  225 (227)
Q Consensus       210 -----------~~~~g~t~l~~a~~~~  225 (227)
                                 .+..+.||++.|+..|
T Consensus       274 ~~~~~~~~~~~~~~~~~~~l~~aa~~~  300 (364)
T 3ljn_A          274 ACPYHNGTTVLPDRVVWLDFVPAAADP  300 (364)
T ss_dssp             TCTTBSSSSBCGGGCCCCTTSCSSCCH
T ss_pred             cCcccCcccccccccccccchhhhhcc
Confidence                       3445677776665544

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=2.1e-31  Score=199.81  Aligned_cols=173  Identities=18%  Similarity=0.163  Sum_probs=141.9

Q ss_pred             ccCCHHHHHHHhc---CCchHHHhhHhhhhcc-------c----cccCCCCchhhhhhhhcccccccHHHHHHHHHhCCc
Q 037129           22 QQMDPIFFNAAAA---GNSEPFKDMAGEEIKS-------L----LTAKTENTILHINIISQERENVSTKFVAEILEKCPL   87 (227)
Q Consensus        22 ~~~~~~l~~a~~~---g~~~~v~~ll~~~~~~-------~----~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~   87 (227)
                      ..+.+|||+|+..   |+.++|++|++.|.++       +    ..+..|.||||+|  +..|+.+++++|++.    +.
T Consensus        52 ~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A--~~~g~~~~v~~Ll~~----ga  125 (273)
T 2pnn_A           52 ETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIA--IERRNMTLVTLLVEN----GA  125 (273)
T ss_dssp             TTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHH--HHTTCHHHHHHHHHT----TC
T ss_pred             cCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHH--HHcCCHHHHHHHHHC----CC
Confidence            4566789999987   9999999999987542       2    2556899999999  999999999999986    67


Q ss_pred             ccccccC--------------CCCCHHHHHHHcCCHHHHHHHHH---hhhcccccchhhhhhHHHHHHHHHhccCCCCcH
Q 037129           88 LLLQVNA--------------KDDTPLHVAAKFGHSDIVRFLVE---RAKLTQHENEELESRVGAAWQIIRMTNKEKNTA  150 (227)
Q Consensus        88 ~~~~~~~--------------~g~tpl~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  150 (227)
                      +++..+.              .|+||||+|+..|+.+++++|++   .|...+.                  ++..|.||
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~------------------~d~~g~tp  187 (273)
T 2pnn_A          126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA------------------RDSVGNTV  187 (273)
T ss_dssp             CTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC------------------CCTTSCCH
T ss_pred             CcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCcee------------------eCCCCCcH
Confidence            7787776              79999999999999999999999   8887654                  78999999


Q ss_pred             HHHHHhcCC---------HHHHHHHHhcCCCCC------cccccCCCCHHHHHHHcCcHHHHHHHHhcCC-CCcccCCCC
Q 037129          151 LHEAVCHQN---------VDVVEILTKEDPDYP------YSANNYGKTPLYMAAESRSSNMVLALLENRT-SVSHEGPNG  214 (227)
Q Consensus       151 l~~A~~~~~---------~~~~~~ll~~~~~~~------~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g  214 (227)
                      ||+|+..++         .+++++|++.|+++.      ...+..|.||||+|+..|+.+++++|+++|+ ++......+
T Consensus       188 Lh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~  267 (273)
T 2pnn_A          188 LHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAA  267 (273)
T ss_dssp             HHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC---------
T ss_pred             HHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhh
Confidence            999999888         799999999998864      2588999999999999999999999999998 888777766


Q ss_pred             CCHH
Q 037129          215 KTAL  218 (227)
Q Consensus       215 ~t~l  218 (227)
                      .+|-
T Consensus       268 ~~~~  271 (273)
T 2pnn_A          268 HHHH  271 (273)
T ss_dssp             ----
T ss_pred             hhcc
Confidence            6654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=1.8e-31  Score=201.39  Aligned_cols=164  Identities=14%  Similarity=0.118  Sum_probs=151.0

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCC-CCHHH
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKD-DTPLH  101 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g-~tpl~  101 (227)
                      .+.+|||.|+..|+.++|++|++.|.+++..+..|.||||+|  +..|+.+++++|++.    +.+++.++..| .||||
T Consensus        61 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~  134 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA--VDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFY  134 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH--HHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHH
Confidence            357789999999999999999999999999999999999999  999999999999997    77888999999 79999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCC
Q 037129          102 VAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYG  181 (227)
Q Consensus       102 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~  181 (227)
                      +|+..|+.+++++|+++|.....                   ...|.||||+|+..|+.+++++|++.|+++. ..+..|
T Consensus       135 ~A~~~~~~~~v~~Ll~~g~~~~~-------------------~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n-~~~~~g  194 (285)
T 3kea_A          135 HAVMLNDVSIVSYFLSEIPSTFD-------------------LAILLSCIHITIKNGHVDMMILLLDYMTSTN-TNNSLL  194 (285)
T ss_dssp             HHHHTTCHHHHHHHHTTSCTTCC-------------------CSTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-TTCCCB
T ss_pred             HHHHcCCHHHHHHHHhCCCcccc-------------------ccCCccHHHHHHHcChHHHHHHHHHcCCCCC-cccCCC
Confidence            99999999999999999876521                   2388999999999999999999999999854 788899


Q ss_pred             CCH-HHHHHHcCcHHHHHHHHhcCCCCcccCC
Q 037129          182 KTP-LYMAAESRSSNMVLALLENRTSVSHEGP  212 (227)
Q Consensus       182 ~t~-l~~A~~~~~~~~v~~Ll~~g~~~~~~~~  212 (227)
                      .|| ||+|+..++.+++++|+++|++++..+.
T Consensus       195 ~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~  226 (285)
T 3kea_A          195 FIPDIKLAIDNKDIEMLQALFKYDINIYSANL  226 (285)
T ss_dssp             CCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG
T ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh
Confidence            997 9999999999999999999999999874

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=1.4e-30  Score=181.79  Aligned_cols=148  Identities=24%  Similarity=0.259  Sum_probs=136.9

Q ss_pred             cCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhH
Q 037129           54 AKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRV  133 (227)
Q Consensus        54 ~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  133 (227)
                      ...+.++|+.|  +..|+.+++++|++.    +.+++.++..|+||||+|+..|+.+++++|+++|...+.         
T Consensus        11 ~~~~~~~l~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---------   75 (169)
T 2y1l_E           11 GSDLGKKLLEA--ARAGRDDEVRILMAN----GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA---------   75 (169)
T ss_dssp             --CHHHHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC---------
T ss_pred             CCcccchHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc---------
Confidence            34567999999  999999999999986    677888999999999999999999999999999987654         


Q ss_pred             HHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCC
Q 037129          134 GAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPN  213 (227)
Q Consensus       134 ~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  213 (227)
                               .+..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..++.+++++|+++|++++.+|..
T Consensus        76 ---------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  145 (169)
T 2y1l_E           76 ---------VDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF  145 (169)
T ss_dssp             ---------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ---------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence                     68899999999999999999999999999954 78889999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHhcC
Q 037129          214 GKTALHAAAMRSY  226 (227)
Q Consensus       214 g~t~l~~a~~~~~  226 (227)
                      |.|||++|+.+|+
T Consensus       146 g~t~l~~A~~~~~  158 (169)
T 2y1l_E          146 GKTAFDISIDNGN  158 (169)
T ss_dssp             SCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHhCC
Confidence            9999999999886

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=6.9e-31  Score=182.66  Aligned_cols=156  Identities=21%  Similarity=0.298  Sum_probs=139.3

Q ss_pred             CCHHHHHHHhcCCchHHHhhHh-hhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAG-EEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHV  102 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~-~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~  102 (227)
                      ..++|+.|+..|+.+.|++|++ .+.+++..+..|.||||+|  +..++.+++++|++.    +.+++.++..|+||||+
T Consensus         8 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~   81 (165)
T 3twr_A            8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA--AGYNRVSVVEYLLQH----GADVHAKDKGGLVPLHN   81 (165)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHH--HHcChHHHHHHHHhc----CCCCCccCCCCCCHHHH
Confidence            4567999999999999999998 5666667788899999999  999999999999986    77788899999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCC
Q 037129          103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGK  182 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~  182 (227)
                      |+..|+.+++++|+++|...+.                  .+..|.||||+|+..++.+++++|++.|+++ +..+..|.
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~  142 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHGAVVNV------------------ADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGN  142 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTC------------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred             HHHcCcHHHHHHHHhCCCCCCC------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCC
Confidence            9999999999999999988654                  6889999999999999999999999999984 48899999


Q ss_pred             CHHHHHHHcCcHHHHHHHHhcCC
Q 037129          183 TPLYMAAESRSSNMVLALLENRT  205 (227)
Q Consensus       183 t~l~~A~~~~~~~~v~~Ll~~g~  205 (227)
                      |||++|.. ++.+++++|+++|+
T Consensus       143 t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          143 TPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CTGGGSCT-TCHHHHHHHHTC--
T ss_pred             ChhHhHhc-CChHHHHHHhhccc
Confidence            99999776 89999999999885

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=1.7e-30  Score=178.53  Aligned_cols=144  Identities=20%  Similarity=0.234  Sum_probs=132.3

Q ss_pred             CCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHH
Q 037129           57 ENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAA  136 (227)
Q Consensus        57 g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  136 (227)
                      ..++|+.|  +..|+.+++++|++.    +.+++ .+..|.||||+|+..|+.+++++|++.|...+.            
T Consensus         2 ~~~~L~~A--~~~g~~~~v~~Ll~~----g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------   62 (153)
T 1awc_B            2 LGKKLLEA--ARAGQDDEVRILMAN----GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA------------   62 (153)
T ss_dssp             HHHHHHHH--HHHTCHHHHHHHHHH----TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC------------
T ss_pred             ccHHHHHH--HHcCCHHHHHHHHHc----CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC------------
Confidence            35899999  999999999999997    33444 578899999999999999999999999987654            


Q ss_pred             HHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCC
Q 037129          137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKT  216 (227)
Q Consensus       137 ~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  216 (227)
                            .+..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..++.+++++|+++|++++.++..|.|
T Consensus        63 ------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t  135 (153)
T 1awc_B           63 ------RTKVDRTPLHMAASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKT  135 (153)
T ss_dssp             ------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ------CCCCCCCHHHHHHHcChHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence                  68889999999999999999999999999954 78899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC
Q 037129          217 ALHAAAMRSY  226 (227)
Q Consensus       217 ~l~~a~~~~~  226 (227)
                      ||++|+.+|+
T Consensus       136 ~l~~A~~~~~  145 (153)
T 1awc_B          136 AFDISIDNGN  145 (153)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHcCC
Confidence            9999999886

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=3.8e-30  Score=180.09  Aligned_cols=146  Identities=27%  Similarity=0.285  Sum_probs=134.0

Q ss_pred             CCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHH
Q 037129           57 ENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAA  136 (227)
Q Consensus        57 g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  136 (227)
                      +.+|||.|  +..|+.++++.+++.   .+..++.++..|+||||+|+..|+.+++++|+++|...+.            
T Consensus         2 ~~~~L~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------   64 (172)
T 3v30_A            2 DSLSIHQL--AAQGELDQLKEHLRK---GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI------------   64 (172)
T ss_dssp             --CCHHHH--HHTTCHHHHHHHHTT---CSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC------------
T ss_pred             chhhHHHH--HHcCCHHHHHHHHHc---CcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchh------------
Confidence            46899999  999999999999985   3444788899999999999999999999999999988654            


Q ss_pred             HHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCC
Q 037129          137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKT  216 (227)
Q Consensus       137 ~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  216 (227)
                            .+..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..++.+++++|+++|++++.++..|.|
T Consensus        65 ------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t  137 (172)
T 3v30_A           65 ------LAKERESALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYT  137 (172)
T ss_dssp             ------CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ------hcccCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence                  68899999999999999999999999999954 78899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC
Q 037129          217 ALHAAAMRSY  226 (227)
Q Consensus       217 ~l~~a~~~~~  226 (227)
                      ||++|+.+|+
T Consensus       138 ~l~~A~~~~~  147 (172)
T 3v30_A          138 PMDLAVALGY  147 (172)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhCc
Confidence            9999999886

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=2.9e-34  Score=209.90  Aligned_cols=177  Identities=17%  Similarity=0.078  Sum_probs=157.0

Q ss_pred             ccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHH
Q 037129           22 QQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLH  101 (227)
Q Consensus        22 ~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~  101 (227)
                      ....++|+.|+..|+.++|++|++.|.+++..|..|.||||+|  +..|+.+++++|++.    +.+++.+|..|+||||
T Consensus        19 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A--~~~g~~~~v~~Ll~~----ga~~n~~d~~g~tpLh   92 (229)
T 2vge_A           19 LNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA--ICGANYSIVDFLITA----GANVNSPDSHGWTPLH   92 (229)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHH
T ss_pred             cchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCCHHH
Confidence            3445689999999999999999999999999999999999999  999999999999986    7788999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhcc-CCCCcHHHHH--HhcCCHHHHHHHHhcCCCCCcccc
Q 037129          102 VAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTN-KEKNTALHEA--VCHQNVDVVEILTKEDPDYPYSAN  178 (227)
Q Consensus       102 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~l~~A--~~~~~~~~~~~ll~~~~~~~~~~~  178 (227)
                      +|+..|+.+++++|+++|+..+.                  .+ ..|.||||+|  +..++.+++++|++.|+++. ..+
T Consensus        93 ~A~~~g~~~~v~~Ll~~ga~~~~------------------~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~-~~~  153 (229)
T 2vge_A           93 CAASCNDTVICMALVQHGAAIFA------------------TTLSDGATAFEKCDPYREGYADCATYLADVEQSMG-LMN  153 (229)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCTTC------------------CCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT-TSG
T ss_pred             HHHHcCCHHHHHHHHHcCCCccc------------------ccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc-ccc
Confidence            99999999999999999988764                  44 6899999999  99999999999999999854 778


Q ss_pred             cCCCCHHHHHHHcCcHHHHHHHHhcCCC--CcccCCCCCCHHHHHHHhcC
Q 037129          179 NYGKTPLYMAAESRSSNMVLALLENRTS--VSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       179 ~~~~t~l~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ..+.+|++.++...   ..++|++.|++  ++.+|..|.||||+|+.+|+
T Consensus       154 ~~~~~~l~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~  200 (229)
T 2vge_A          154 SGAVYALWDYSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQ  200 (229)
T ss_dssp             GGEEEESSCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTE
T ss_pred             CCchHHHHHHhhcc---ccccCccccccccccccCCCcccHHHHHHHcCC
Confidence            88889998655443   33678889988  77889999999999999886

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=6.1e-30  Score=192.11  Aligned_cols=157  Identities=14%  Similarity=0.162  Sum_probs=143.4

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhhhh-ccccccCCCCchhhhhhhh-----cccccccHHHHHHHHHhCCcccccccCCC
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGEEI-KSLLTAKTENTILHINIIS-----QERENVSTKFVAEILEKCPLLLLQVNAKD   96 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~~~-~~~~~~~~g~t~L~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   96 (227)
                      .+.+|||+|+..|+.++|++|++.|. +++..+..|.||||+|  +     ..++.++++.|++.    +...+..+..|
T Consensus       110 ~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a--~~~~~~~~~~~~~v~~Ll~~----g~~~~~~~~~g  183 (276)
T 4hbd_A          110 NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT--ALATLKTQDDIETVLQLFRL----GNINAKASQAG  183 (276)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHG--GGCCCCSHHHHHHHHHHHHH----SCTTCCCTTTC
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHH--HHHHhhhhhhHHHHHHHHHc----CCCccccCCCC
Confidence            34567999999999999999999997 8889999999999999  7     67889999999987    56667788899


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHh-cCCCCCc
Q 037129           97 DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK-EDPDYPY  175 (227)
Q Consensus        97 ~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~-~~~~~~~  175 (227)
                      +||||+|+..|+.+++++|+++|++++.                  ++..|.||||+|+..|+.+++++|++ .|+++ +
T Consensus       184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~------------------~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~-~  244 (276)
T 4hbd_A          184 QTALMLAVSHGRVDVVKALLACEADVNV------------------QDDDGSTALMCACEHGHKEIAGLLLAVPSCDI-S  244 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT-T
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCC------------------CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC-c
Confidence            9999999999999999999999998765                  78999999999999999999999999 78884 4


Q ss_pred             ccccCCCCHHHHHHHcCcHHHHHHHHhcC
Q 037129          176 SANNYGKTPLYMAAESRSSNMVLALLENR  204 (227)
Q Consensus       176 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  204 (227)
                      ..+..|.||||+|+..|+.+++++|++++
T Consensus       245 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          245 LTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            88999999999999999999999999874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=3.8e-32  Score=200.07  Aligned_cols=177  Identities=15%  Similarity=0.036  Sum_probs=127.6

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHV  102 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~  102 (227)
                      .+.+||+.|+..|+.+.++.|++.|.+++.. ..|.||||.|  +..|+.+++++|++.    +.+++.++..|+||||+
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~d~~g~t~L~~   76 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDS--SLEGEFDLVQRIIYE----VDDPSLPNDEGITALHN   76 (239)
T ss_dssp             ----------------------------------CHHHHHHH--HHHTCHHHHHHHTST----TSSCCCCCTTSCCHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHH--HHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHH
Confidence            4577899999999999999999999998866 4889999999  999999999999975    66888999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCC
Q 037129          103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGK  182 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~  182 (227)
                      |+..|+.+++++|+++|+..+.                  ++..|.||||+|+..|+.+++++|++.|+++. ..+..|.
T Consensus        77 A~~~g~~~~v~~Ll~~ga~~~~------------------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~~  137 (239)
T 1ycs_B           77 AVCAGHTEIVKFLVQFGVNVNA------------------ADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-AMTYSDM  137 (239)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTC------------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSSC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCc------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-eecCCCC
Confidence            9999999999999999988665                  78899999999999999999999999999966 5555555


Q ss_pred             -CHHHHH--HHcCcHHHHHHHHhcCCCCccc---------CCCCCCHHHHHHHhc
Q 037129          183 -TPLYMA--AESRSSNMVLALLENRTSVSHE---------GPNGKTALHAAAMRS  225 (227)
Q Consensus       183 -t~l~~A--~~~~~~~~v~~Ll~~g~~~~~~---------~~~g~t~l~~a~~~~  225 (227)
                       ||||.|  +..|+.+++++|+++|++++..         +..+.++++++...|
T Consensus       138 ~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G  192 (239)
T 1ycs_B          138 QTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEG  192 (239)
T ss_dssp             CCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSS
T ss_pred             cchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCC
Confidence             999999  7889999999999999888775         556777777666554

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.4e-30  Score=193.47  Aligned_cols=164  Identities=20%  Similarity=0.184  Sum_probs=144.9

Q ss_pred             ccCCHHHHHHHhc---CCchHHHhhHhhhhccccc-----------cCCCCchhhhhhhhcccccccHHHHHHHHHhCCc
Q 037129           22 QQMDPIFFNAAAA---GNSEPFKDMAGEEIKSLLT-----------AKTENTILHINIISQERENVSTKFVAEILEKCPL   87 (227)
Q Consensus        22 ~~~~~~l~~a~~~---g~~~~v~~ll~~~~~~~~~-----------~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~   87 (227)
                      ..+.+|||.|+..   |+.++|++|++.|.+++..           +..|.||||+|  +..|+.+++++|++.    +.
T Consensus        41 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----ga  114 (256)
T 2etb_A           41 STGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIA--IEKRSLQCVKLLVEN----GA  114 (256)
T ss_dssp             TTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHH--HHTTCHHHHHHHHHT----TC
T ss_pred             CCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHH--HHcCCHHHHHHHHHc----CC
Confidence            3455679999999   9999999999988876522           36799999999  999999999999986    67


Q ss_pred             ccccccCC-------------CCCHHHHHHHcCCHHHHHHHHH---hhhcccccchhhhhhHHHHHHHHHhccCCCCcHH
Q 037129           88 LLLQVNAK-------------DDTPLHVAAKFGHSDIVRFLVE---RAKLTQHENEELESRVGAAWQIIRMTNKEKNTAL  151 (227)
Q Consensus        88 ~~~~~~~~-------------g~tpl~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l  151 (227)
                      +++.++..             |+||||+|+..|+.+++++|++   +|+..+.                  ++..|.|||
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~------------------~d~~g~TpL  176 (256)
T 2etb_A          115 DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA------------------TDSLGNTVL  176 (256)
T ss_dssp             CTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC------------------CCTTSCCHH
T ss_pred             CCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCc------------------cCCCCCCHH
Confidence            77877775             9999999999999999999999   8888664                  789999999


Q ss_pred             HHHHh--cCCHH-------HHHHHHhcCCCCC------cccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcc
Q 037129          152 HEAVC--HQNVD-------VVEILTKEDPDYP------YSANNYGKTPLYMAAESRSSNMVLALLENRTSVSH  209 (227)
Q Consensus       152 ~~A~~--~~~~~-------~~~~ll~~~~~~~------~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~  209 (227)
                      |+|+.  .++.+       ++++|++.|+++.      +..+..|.||||+|+..|+.+++++|+++|.+...
T Consensus       177 h~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~  249 (256)
T 2etb_A          177 HALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA  249 (256)
T ss_dssp             HHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC
Confidence            99998  78888       9999999998852      57899999999999999999999999999876543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=2.9e-29  Score=172.85  Aligned_cols=152  Identities=20%  Similarity=0.192  Sum_probs=131.7

Q ss_pred             CHHHHHHHhcCCchHHHhhHhh-hhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGE-EIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      .++|+.|+..|+.+.+++|++. +.+++..+..|.||||++   ..|+.+++++|++.    +.+++.++..|+||||+|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~~---~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A   75 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM---MFGSTAIALELLKQ----GASPNVQDTSGTSPVHDA   75 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHS---CTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHH
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHHH---HcCCHHHHHHHHHC----CCCCCCcCCCCCCHHHHH
Confidence            3679999999999999999986 447778888999999984   45888999998875    677888899999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCC
Q 037129          104 AKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKT  183 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t  183 (227)
                      +..|+.+++++|+++|...+.                  ++..|.||||+|+..|+.+++++|++. ++ .+..+..|.|
T Consensus        76 ~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t  135 (156)
T 1bd8_A           76 ARTGFLDTLKVLVEHGADVNV------------------PDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLT  135 (156)
T ss_dssp             HHTTCHHHHHHHHHTTCCSCC------------------CCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCC
T ss_pred             HHcCcHHHHHHHHHcCCCCCC------------------cCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCC
Confidence            999999999999999887654                  678899999999999999999999988 66 4478889999


Q ss_pred             HHHHHHHcCcHHHHHHHHhc
Q 037129          184 PLYMAAESRSSNMVLALLEN  203 (227)
Q Consensus       184 ~l~~A~~~~~~~~v~~Ll~~  203 (227)
                      ||++|+..++.+++++|+++
T Consensus       136 ~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          136 PLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHcCcHHHHHHHHhh
Confidence            99999999999999999874

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=4.5e-30  Score=177.96  Aligned_cols=145  Identities=21%  Similarity=0.209  Sum_probs=134.1

Q ss_pred             CCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHH
Q 037129           56 TENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGA  135 (227)
Q Consensus        56 ~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  135 (227)
                      ...||||.|  +..|+.+++++|++.    +.+++.++..|+||||+|+. |+.+++++|+++|...+.           
T Consensus         4 ~~~~~L~~A--~~~g~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~-----------   65 (162)
T 1ihb_A            4 PWGNELASA--AARGDLEQLTSLLQN----NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL-----------   65 (162)
T ss_dssp             -CHHHHHHH--HHHTCHHHHHHHTTS----CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTC-----------
T ss_pred             hHhhHHHHH--HHcCCHHHHHHHHhC----CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCC-----------
Confidence            467999999  999999999999974    67788899999999999999 999999999999988654           


Q ss_pred             HHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCC-CcccCCCC
Q 037129          136 AWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTS-VSHEGPNG  214 (227)
Q Consensus       136 ~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g  214 (227)
                             ++..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..++.+++++|+++|++ ++.++..|
T Consensus        66 -------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g  137 (162)
T 1ihb_A           66 -------KDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG  137 (162)
T ss_dssp             -------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTS
T ss_pred             -------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCC
Confidence                   68899999999999999999999999999854 7889999999999999999999999999998 69999999


Q ss_pred             CCHHHHHHHhcC
Q 037129          215 KTALHAAAMRSY  226 (227)
Q Consensus       215 ~t~l~~a~~~~~  226 (227)
                      .|||++|+.+|+
T Consensus       138 ~t~l~~A~~~~~  149 (162)
T 1ihb_A          138 DTACDLARLYGR  149 (162)
T ss_dssp             CCHHHHHHHTTC
T ss_pred             CcHHHHHHHcCC
Confidence            999999999886

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=1.4e-29  Score=192.16  Aligned_cols=173  Identities=23%  Similarity=0.214  Sum_probs=148.5

Q ss_pred             HHHhcCCchHHHhhHhhhhccc---------cccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHH
Q 037129           30 NAAAAGNSEPFKDMAGEEIKSL---------LTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPL  100 (227)
Q Consensus        30 ~a~~~g~~~~v~~ll~~~~~~~---------~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl  100 (227)
                      .++..++.+.++.++....++.         ..+..|.||||.|  +..|+.+++++|++.    +.+++..+..|+|||
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L   77 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAA--CSSGDTEEVLRLLER----GADINYANVDGLTAL   77 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHH--HHHTCHHHHHHHHHH----CCCTTCBCTTCCBHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHH--HHcCCHHHHHHHHHc----CCCCcccCCCCCCHH
Confidence            3677777888888887443322         1234677999999  999999999999987    677889999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcc----
Q 037129          101 HVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS----  176 (227)
Q Consensus       101 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~----  176 (227)
                      |+|+..|+.+++++|+++|+..+.                  .+..|.||||+|+..|+.+++++|++.|+++...    
T Consensus        78 ~~A~~~g~~~~v~~Ll~~ga~~~~------------------~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g  139 (299)
T 1s70_B           78 HQACIDDNVDMVKFLVENGANINQ------------------PDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG  139 (299)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCC------------------CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCC
Confidence            999999999999999999988654                  6788999999999999999999999998775311    


Q ss_pred             -------------------------------------------------------cccCCCCHHHHHHHcCcHHHHHHHH
Q 037129          177 -------------------------------------------------------ANNYGKTPLYMAAESRSSNMVLALL  201 (227)
Q Consensus       177 -------------------------------------------------------~~~~~~t~l~~A~~~~~~~~v~~Ll  201 (227)
                                                                             .+..|.||||+|+..|+.+++++|+
T Consensus       140 ~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  219 (299)
T 1s70_B          140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI  219 (299)
T ss_dssp             CCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHH
Confidence                                                                   2245889999999999999999999


Q ss_pred             hcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          202 ENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       202 ~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ++|++++.+|..|.||||+|+.+|+
T Consensus       220 ~~g~d~~~~d~~g~tpL~~A~~~~~  244 (299)
T 1s70_B          220 QARYDVNIKDYDGWTPLHAAAHWGK  244 (299)
T ss_dssp             TTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HcCCCCCCcCCCCCcHHHHHHhcCC
Confidence            9999999999999999999999886

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=8e-30  Score=179.63  Aligned_cols=148  Identities=23%  Similarity=0.231  Sum_probs=133.8

Q ss_pred             CCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHH
Q 037129           55 KTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVG  134 (227)
Q Consensus        55 ~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  134 (227)
                      ..+.++|+.|  +..|+.++++.|++.   .+.+++..+..|+||||+|+..|+.+++++|++.|...+.          
T Consensus         3 ~~~~~~l~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----------   67 (179)
T 3f6q_A            3 PEFMDDIFTQ--CREGNAVAVRLWLDN---TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV----------   67 (179)
T ss_dssp             ----CCHHHH--HHHTCHHHHHHHHHC---TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------
T ss_pred             HHHHHHHHHH--HHcCCHHHHHHHHhc---CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC----------
Confidence            3678999999  999999999999984   3566888999999999999999999999999999988664          


Q ss_pred             HHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 037129          135 AAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNG  214 (227)
Q Consensus       135 ~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  214 (227)
                              .+..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..++.+++++|+++|++++.++..|
T Consensus        68 --------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  138 (179)
T 3f6q_A           68 --------MNRGDDTPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG  138 (179)
T ss_dssp             --------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTS
T ss_pred             --------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCC
Confidence                    68899999999999999999999999999954 788999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHhcC
Q 037129          215 KTALHAAAMRSY  226 (227)
Q Consensus       215 ~t~l~~a~~~~~  226 (227)
                      .|||++|+..++
T Consensus       139 ~tpl~~A~~~~~  150 (179)
T 3f6q_A          139 EMPVDKAKAPLR  150 (179)
T ss_dssp             CCGGGGSCHHHH
T ss_pred             CCcHHHHHHHHH
Confidence            999999987653

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=3.7e-30  Score=178.99  Aligned_cols=147  Identities=20%  Similarity=0.267  Sum_probs=133.6

Q ss_pred             ccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhh
Q 037129           53 TAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESR  132 (227)
Q Consensus        53 ~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  132 (227)
                      .+..|.++||.|  +..|+.++++.|++.   .+..++..+..|+||||+|+..|+.+++++|+++|...+.        
T Consensus         4 ~~~~~~~~l~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--------   70 (165)
T 3twr_A            4 GNSEADRQLLEA--AKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA--------   70 (165)
T ss_dssp             --CHHHHHHHHH--HHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--------
T ss_pred             CcchhhHHHHHH--HHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCc--------
Confidence            456788999999  999999999999874   3556677888899999999999999999999999988654        


Q ss_pred             HHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCC
Q 037129          133 VGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGP  212 (227)
Q Consensus       133 ~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~  212 (227)
                                .+..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..++.+++++|+++|++++.+|.
T Consensus        71 ----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  139 (165)
T 3twr_A           71 ----------KDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR  139 (165)
T ss_dssp             ----------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ----------cCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence                      78899999999999999999999999999954 7889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHH
Q 037129          213 NGKTALHAAAM  223 (227)
Q Consensus       213 ~g~t~l~~a~~  223 (227)
                      .|.|||++|+.
T Consensus       140 ~g~t~l~~a~~  150 (165)
T 3twr_A          140 DGNTPLDLVKD  150 (165)
T ss_dssp             TSCCTGGGSCT
T ss_pred             CCCChhHhHhc
Confidence            99999999765

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=1.7e-29  Score=173.98  Aligned_cols=144  Identities=17%  Similarity=0.202  Sum_probs=133.4

Q ss_pred             CCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHH
Q 037129           57 ENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAA  136 (227)
Q Consensus        57 g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  136 (227)
                      +.|+||.|  +..|+.++++.|++.   .+.+++..+..|+||||+ +..|+.+++++|+++|...+.            
T Consensus         2 ~~~~L~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~------------   63 (156)
T 1bd8_A            2 AGDRLSGA--AARGDVQEVRRLLHR---ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNV------------   63 (156)
T ss_dssp             HHHHHHHH--HHHTCHHHHHHHHHT---TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTC------------
T ss_pred             cchHHHHH--HHhCCHHHHHHHHHh---hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCC------------
Confidence            46899999  999999999999985   355788899999999999 999999999999999988654            


Q ss_pred             HHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCC
Q 037129          137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKT  216 (227)
Q Consensus       137 ~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  216 (227)
                            ++..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++ ++++.+|..|.|
T Consensus        64 ------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t  135 (156)
T 1bd8_A           64 ------QDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLT  135 (156)
T ss_dssp             ------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCC
T ss_pred             ------cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCC
Confidence                  7889999999999999999999999999984 47888999999999999999999999999 999999999999


Q ss_pred             HHHHHHHhcC
Q 037129          217 ALHAAAMRSY  226 (227)
Q Consensus       217 ~l~~a~~~~~  226 (227)
                      ||++|+.+|+
T Consensus       136 ~l~~A~~~~~  145 (156)
T 1bd8_A          136 PLELALQRGA  145 (156)
T ss_dssp             HHHHHHHSCC
T ss_pred             HHHHHHHcCc
Confidence            9999999886

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=6.1e-30  Score=190.48  Aligned_cols=164  Identities=20%  Similarity=0.184  Sum_probs=143.0

Q ss_pred             ccCCHHHHHHH---hcCCchHHHhhHhhhhc-----------cccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCc
Q 037129           22 QQMDPIFFNAA---AAGNSEPFKDMAGEEIK-----------SLLTAKTENTILHINIISQERENVSTKFVAEILEKCPL   87 (227)
Q Consensus        22 ~~~~~~l~~a~---~~g~~~~v~~ll~~~~~-----------~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~   87 (227)
                      ..+.+|||.|+   ..|+.++|++|++.|.+           ....+..|.||||+|  +..|+.+++++|++.    +.
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----ga  117 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIA--IERRCKHYVELLVEK----GA  117 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHH--HHTTCHHHHHHHHHT----TC
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHH--HHcCCHHHHHHHHhC----CC
Confidence            34667899999   77999999999997744           224455899999999  999999999999996    67


Q ss_pred             cccccc--------------CCCCCHHHHHHHcCCHHHHHHHHH---hhhcccccchhhhhhHHHHHHHHHhccCCCCcH
Q 037129           88 LLLQVN--------------AKDDTPLHVAAKFGHSDIVRFLVE---RAKLTQHENEELESRVGAAWQIIRMTNKEKNTA  150 (227)
Q Consensus        88 ~~~~~~--------------~~g~tpl~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  150 (227)
                      +++..+              ..|+||||+|+..|+.+++++|++   .|...+.                  ++..|+||
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~------------------~d~~g~Tp  179 (260)
T 3jxi_A          118 DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRR------------------QDSRGNTV  179 (260)
T ss_dssp             CTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC------------------CCTTSCCH
T ss_pred             CcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcc------------------cCCCCCcH
Confidence            778777              589999999999999999999999   8887654                  78999999


Q ss_pred             HHHHHhcCC---------HHHHHHHHhcCCCCC------cccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcc
Q 037129          151 LHEAVCHQN---------VDVVEILTKEDPDYP------YSANNYGKTPLYMAAESRSSNMVLALLENRTSVSH  209 (227)
Q Consensus       151 l~~A~~~~~---------~~~~~~ll~~~~~~~------~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~  209 (227)
                      ||+|+..++         .+++++|++.|+++.      +..+..|.||||+|+..|+.+++++|+++|.+...
T Consensus       180 Lh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          180 LHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             HHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence            999998877         799999999988753      46899999999999999999999999999876544

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=5.8e-29  Score=167.50  Aligned_cols=133  Identities=12%  Similarity=0.163  Sum_probs=110.9

Q ss_pred             hccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccch
Q 037129           48 IKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENE  127 (227)
Q Consensus        48 ~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~  127 (227)
                      .+++..+..|.||||+|  +..++.+++++|++.    +.+++.++..|+||||+|+. ++.+++++|+++|...+.   
T Consensus         3 ~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~---   72 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATA--AARGQVETVRQLLEA----GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC---   72 (136)
T ss_dssp             CCCSCCCCCCSCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC---
T ss_pred             CCccCCCCCCccHHHHH--HHcCCHHHHHHHHHc----CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC---
Confidence            45567777888888888  888888888888875    66777888888888888888 888888888888887654   


Q ss_pred             hhhhhHHHHHHHHHhccCC-CCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCC
Q 037129          128 ELESRVGAAWQIIRMTNKE-KNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTS  206 (227)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~-~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  206 (227)
                                     ++.. |.||||+|+..++.+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++|+|
T Consensus        73 ---------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           73 ---------------ADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             ---------------CBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             ---------------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                           5677 888999888888888888888888884 47788888999999988899999999888875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=6.5e-30  Score=186.81  Aligned_cols=158  Identities=15%  Similarity=0.025  Sum_probs=133.9

Q ss_pred             HHhhHhhhhcccc---ccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHH
Q 037129           40 FKDMAGEEIKSLL---TAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLV  116 (227)
Q Consensus        40 v~~ll~~~~~~~~---~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll  116 (227)
                      |+.|+++|.+++.   .+..|.||||+|  +..|+.+++++|++.    +.+++.++..|+||||+|+..|+.+++++|+
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll   74 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDA--ALTGELEVVQQAVKE----MNDPSQPNEEGITALHNAICGANYSIVDFLI   74 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHH--HHHTCHHHHHHHHHH----SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CeehhccCCCCccccccccchhHHHHHH--HHcCCHHHHHHHHhc----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            4678888888774   344567889999  999999999999986    6778899999999999999999999999999


Q ss_pred             HhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHH--HHcCcH
Q 037129          117 ERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMA--AESRSS  194 (227)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A--~~~~~~  194 (227)
                      +.|+..+.                  .+..|.||||+|+..|+.+++++|++.|+++....+..|.||||+|  +..++.
T Consensus        75 ~~ga~~n~------------------~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~  136 (229)
T 2vge_A           75 TAGANVNS------------------PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYA  136 (229)
T ss_dssp             HTTCCTTC------------------CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHH
T ss_pred             HCCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChH
Confidence            99988665                  7889999999999999999999999999997644457999999999  999999


Q ss_pred             HHHHHHHhcCCCCcccCCCCCCHHHHH
Q 037129          195 NMVLALLENRTSVSHEGPNGKTALHAA  221 (227)
Q Consensus       195 ~~v~~Ll~~g~~~~~~~~~g~t~l~~a  221 (227)
                      +++++|+++|++++.++..|.||++.+
T Consensus       137 ~~v~~Ll~~ga~~~~~~~~~~~~l~~~  163 (229)
T 2vge_A          137 DCATYLADVEQSMGLMNSGAVYALWDY  163 (229)
T ss_dssp             HHHHHHHHHHHHTTTSGGGEEEESSCB
T ss_pred             HHHHHHHHcCCCcccccCCchHHHHHH
Confidence            999999999999999998888887743

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=3.5e-29  Score=172.50  Aligned_cols=144  Identities=13%  Similarity=0.150  Sum_probs=91.6

Q ss_pred             cccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhh
Q 037129           52 LTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELES  131 (227)
Q Consensus        52 ~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  131 (227)
                      ..+..|.||||+|  +..|+.+++++|++.    +.+++..+..|+||||+|+ .|+.+++++|+++|...+.       
T Consensus         7 ~~~~~~~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~-------   72 (156)
T 1bi7_B            7 SSMEPSADWLATA--AARGRVEEVRALLEA----GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC-------   72 (156)
T ss_dssp             ---CCSTTHHHHH--HHHTCHHHHHHHHTT----TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC-------
T ss_pred             CCCccchHHHHHH--HHcCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCC-------
Confidence            3445667777777  777777777777764    5566667777777777764 6777777777777766544       


Q ss_pred             hHHHHHHHHHhccCCCCc-HHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCccc
Q 037129          132 RVGAAWQIIRMTNKEKNT-ALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHE  210 (227)
Q Consensus       132 ~~~~~~~~~~~~~~~~~t-~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~  210 (227)
                                 ++..|.| |||+|+..|+.+++++|++.|+++. ..+..|.||||+|+..++.+++++|+++|++++.+
T Consensus        73 -----------~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~  140 (156)
T 1bi7_B           73 -----------ADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS  140 (156)
T ss_dssp             -----------CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHSSCC------
T ss_pred             -----------cCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCcc
Confidence                       5667777 7777777777777777777777743 66777888888888888888888888888888888


Q ss_pred             CCCCCCHHHHH
Q 037129          211 GPNGKTALHAA  221 (227)
Q Consensus       211 ~~~g~t~l~~a  221 (227)
                      +..|.||.+.+
T Consensus       141 ~~~g~t~~~~~  151 (156)
T 1bi7_B          141 NHARIDAAEGP  151 (156)
T ss_dssp             -----------
T ss_pred             CcCcCcccccC
Confidence            88888777643

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=5.5e-29  Score=191.27  Aligned_cols=167  Identities=15%  Similarity=0.088  Sum_probs=137.1

Q ss_pred             HHHHHhcCCchHHHhhHhhhhcccc-ccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHc
Q 037129           28 FFNAAAAGNSEPFKDMAGEEIKSLL-TAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKF  106 (227)
Q Consensus        28 l~~a~~~g~~~~v~~ll~~~~~~~~-~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~  106 (227)
                      ++.|+..+..++++.|++.|++++. .+..|.||||+|  +..|+.+++++|++.    +.+++.++..|+||||+|+..
T Consensus       101 ~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~A--a~~g~~~~v~~Ll~~----Gad~n~~d~~g~TpLh~A~~~  174 (327)
T 1sw6_A          101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWL--TSIANLELVKHLVKH----GSNRLYGDNMGESCLVKAVKS  174 (327)
T ss_dssp             ---CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTBCCTTCCCHHHHHHHS
T ss_pred             hHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHH--HHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHh
Confidence            4667777778889999999999998 899999999999  999999999999986    788999999999999999999


Q ss_pred             CC---HHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHh----cCCHHHHHHHHhc----------
Q 037129          107 GH---SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC----HQNVDVVEILTKE----------  169 (227)
Q Consensus       107 ~~---~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~----~~~~~~~~~ll~~----------  169 (227)
                      |+   .++++.|++.+...                 ++.++..|+||||+|+.    .|+.+++++|++.          
T Consensus       175 g~~~~~~~~~~ll~~~~~~-----------------~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~  237 (327)
T 1sw6_A          175 VNNYDSGTFEALLDYLYPC-----------------LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN  237 (327)
T ss_dssp             SHHHHTTCHHHHHHHHGGG-----------------GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGG
T ss_pred             cccccHHHHHHHHHhhhcc-----------------ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccc
Confidence            99   78899999987432                 22478999999999999    8999999999987          


Q ss_pred             ----------CCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          170 ----------DPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       170 ----------~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                                |.+ .+..+..|.||||.|+.      +++|+++  +++.+|..|.||||+|+.+|+
T Consensus       238 ~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~  295 (327)
T 1sw6_A          238 RPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGN  295 (327)
T ss_dssp             CCEEEC-----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCC
T ss_pred             hHHHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCC
Confidence                      666 44788899999999985      8999998  688999999999999999886

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=1.6e-29  Score=178.85  Aligned_cols=159  Identities=9%  Similarity=0.074  Sum_probs=137.1

Q ss_pred             HHHHHHHhcCCchHHHhhHhhhhcccccc-CCCCchhhhhhhhcccccc----cHHHHHHHHHhCCcccccccCCCCCHH
Q 037129           26 PIFFNAAAAGNSEPFKDMAGEEIKSLLTA-KTENTILHINIISQERENV----STKFVAEILEKCPLLLLQVNAKDDTPL  100 (227)
Q Consensus        26 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~-~~g~t~L~~a~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~g~tpl  100 (227)
                      ++|+.|+..|+++.++.++..+++  ..+ ..|.||||+|  +..++.+    ++++|++.    +.+++.++..|+|||
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A--~~~~~~~~~~~iv~~Ll~~----Gadvn~~d~~g~TpL   79 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDV--LRNNNDEARYKISMFLINK----GADIKSRTKEGTTLF   79 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHH--TTCSCHHHHHHHHHHHHHT----TCCSSCCCTTCCCTH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHH--HHcCCcchHHHHHHHHHHC----CCCCCCCCCCCCcHH
Confidence            359999999999999999987765  444 6899999999  9988754    77777775    889999999999999


Q ss_pred             HHHHHcCC------HHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCC-cHHHHHHhcC-----CHHHHHHHHh
Q 037129          101 HVAAKFGH------SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN-TALHEAVCHQ-----NVDVVEILTK  168 (227)
Q Consensus       101 ~~A~~~~~------~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~l~~A~~~~-----~~~~~~~ll~  168 (227)
                      |+|+..++      .+++++|+++|++++.                  ++..|. ||||+|+..+     ..+++++|++
T Consensus        80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadin~------------------~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~  141 (186)
T 3t8k_A           80 FPLFQGGGNDITGTTELCKIFLEKGADITA------------------LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS  141 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCSSS------------------CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHT
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHCCCCCCc------------------cCCCcCchHHHHHHHcCCChhhHHHHHHHHHH
Confidence            99999987      5789999999999776                  788999 9999999854     3569999999


Q ss_pred             -cCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccC
Q 037129          169 -EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEG  211 (227)
Q Consensus       169 -~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~  211 (227)
                       .|+++ +.++..|.||||+|+..++.+++++|.+...+.+.++
T Consensus       142 ~~gad~-~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          142 QSGLQL-LIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             STTCCT-TCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             hcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence             99995 4899999999999999999999999998765555544

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=3.5e-28  Score=178.87  Aligned_cols=146  Identities=21%  Similarity=0.164  Sum_probs=104.3

Q ss_pred             CCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHH
Q 037129           55 KTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVG  134 (227)
Q Consensus        55 ~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  134 (227)
                      ..|.||||.|  +..++.+.++.+++.    +.+++. +..|.||||.|+..|+.+++++|++.|...+.          
T Consensus         3 ~~g~t~L~~a--~~~~~~~~~~~ll~~----g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----------   65 (239)
T 1ycs_B            3 ITGQVSLPPG--KRTNLRKTGSERIAH----GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL----------   65 (239)
T ss_dssp             -----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCC----------
T ss_pred             ccccccCchh--hhhhhHHHHHHHhcc----CCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCC----------
Confidence            4689999999  999999999999997    444444 46789999999999999999999999987655          


Q ss_pred             HHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 037129          135 AAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNG  214 (227)
Q Consensus       135 ~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  214 (227)
                              ++..|.||||+|+..|+.+++++|++.|+++. ..+..|.||||+|+..++.+++++|+++|++++..+..|
T Consensus        66 --------~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~  136 (239)
T 1ycs_B           66 --------PNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSD  136 (239)
T ss_dssp             --------CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSS
T ss_pred             --------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCC
Confidence                    78899999999999999999999999999954 888999999999999999999999999999999999888


Q ss_pred             C-CHHHHH--HHhcC
Q 037129          215 K-TALHAA--AMRSY  226 (227)
Q Consensus       215 ~-t~l~~a--~~~~~  226 (227)
                      . ||||+|  +.+|+
T Consensus       137 ~~t~l~~a~~~~~g~  151 (239)
T 1ycs_B          137 MQTAADKCEEMEEGY  151 (239)
T ss_dssp             CCCHHHHCCSSSTTC
T ss_pred             CcchHHHHHHhhhcc
Confidence            7 999998  65655

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=1.3e-27  Score=164.64  Aligned_cols=142  Identities=13%  Similarity=0.005  Sum_probs=115.6

Q ss_pred             hccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCC-H
Q 037129           21 KQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDT-P   99 (227)
Q Consensus        21 ~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t-p   99 (227)
                      .....++||.|+..|+.++|++|++.|.+++..+..|.||||+|  + .++.+++++|++.    +.+++.++..|+| |
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~-~~~~~~v~~Ll~~----g~~~~~~d~~g~ttp   81 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM--M-MGSARVAELLLLH----GAEPNCADPATLTRP   81 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSS--C-TTCHHHHHHHHTT----TCCCCCCCTTTCCCH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--H-cCCHHHHHHHHHc----CCCCCCcCCCCCcHH
Confidence            34456679999999999999999999999999999999999999  7 8999999999985    7788999999999 9


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCccccc
Q 037129          100 LHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANN  179 (227)
Q Consensus       100 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~  179 (227)
                      ||+|+..|+.+++++|+++|+..+.                  ++..|.||||+|+..++.+++++|+++|+++. ..+.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~------------------~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~-~~~~  142 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGARLDV------------------RDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-GSNH  142 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCSSC------------------CCTTCCCHHHHHHHHTCHHHHHHHSSCC---------
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCcc------------------cCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC-ccCc
Confidence            9999999999999999999988765                  78899999999999999999999999999954 7888


Q ss_pred             CCCCHHHHH
Q 037129          180 YGKTPLYMA  188 (227)
Q Consensus       180 ~~~t~l~~A  188 (227)
                      .|.||.+.+
T Consensus       143 ~g~t~~~~~  151 (156)
T 1bi7_B          143 ARIDAAEGP  151 (156)
T ss_dssp             ---------
T ss_pred             CcCcccccC
Confidence            898887744

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=1.6e-26  Score=153.28  Aligned_cols=126  Identities=28%  Similarity=0.388  Sum_probs=110.0

Q ss_pred             CCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHH
Q 037129           56 TENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGA  135 (227)
Q Consensus        56 ~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  135 (227)
                      +|.||||+|  +..|+.+++++|++.    +.+++..+..|.||||+|+..++.+++++|++.|...+.           
T Consensus         1 ~g~t~L~~A--~~~~~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-----------   63 (126)
T 1n0r_A            1 NGRTPLHLA--ARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-----------   63 (126)
T ss_dssp             CCCCHHHHH--HHHTCHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-----------
T ss_pred             CCccHHHHH--HHcCcHHHHHHHHHc----CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcc-----------
Confidence            478999999  999999999999886    666778888899999999999999999999998877654           


Q ss_pred             HHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCC
Q 037129          136 AWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTS  206 (227)
Q Consensus       136 ~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  206 (227)
                             ++..|.||||+|+..++.+++++|++.|+++. ..+..|.|||++|+..++.+++++|+++|++
T Consensus        64 -------~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           64 -------KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             -------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             -------cCCCCCcHHHHHHHcChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence                   67888999999999999999999999988844 7788899999999999999999999999875

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=4.8e-27  Score=158.10  Aligned_cols=125  Identities=14%  Similarity=0.060  Sum_probs=116.1

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCC-CCCHHH
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAK-DDTPLH  101 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-g~tpl~  101 (227)
                      ...++||.|+..|+.+++++|++.|.+++..+..|.||||+|  +. ++.+++++|++.    +.+++.++.. |+||||
T Consensus        11 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~-~~~~~v~~Ll~~----g~~~~~~~~~~g~t~L~   83 (136)
T 1d9s_A           11 SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM--MM-GSAQVAELLLLH----GAEPNCADPATLTRPVH   83 (136)
T ss_dssp             CCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTS--TT-SCHHHHHHHHHH----TCCSSCCBTTTTBCHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHH--Hc-CCHHHHHHHHHC----CCCCCCcCCCCCCCHHH
Confidence            345579999999999999999999999999999999999999  88 999999999997    7778899999 999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 037129          102 VAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD  172 (227)
Q Consensus       102 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~  172 (227)
                      +|+..|+.+++++|+++|+..+.                  ++..|.||||+|+..++.+++++|+++|++
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~~~~------------------~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           84 DAAREGFLDTLVVLHRAGARLDV------------------CDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTCCCCCC------------------CSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCc------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999988765                  788999999999999999999999998864

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=1.5e-27  Score=168.65  Aligned_cols=143  Identities=11%  Similarity=0.002  Sum_probs=125.3

Q ss_pred             CCchhhhhhhhcccccccHHHHHHHHHhCCccccccc-CCCCCHHHHHHHcCCH----HHHHHHHHhhhcccccchhhhh
Q 037129           57 ENTILHINIISQERENVSTKFVAEILEKCPLLLLQVN-AKDDTPLHVAAKFGHS----DIVRFLVERAKLTQHENEELES  131 (227)
Q Consensus        57 g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~tpl~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~  131 (227)
                      +.++|+.|  ++.|+.+.++.+++.    +  ++..+ ..|+||||+|+..++.    +++++|+++|++++.       
T Consensus         6 ~~~~l~~A--a~~g~~~~~~~l~~~----~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~-------   70 (186)
T 3t8k_A            6 EYRTVSAA--AMLGTYEDFLELFEK----G--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS-------   70 (186)
T ss_dssp             HCSSHHHH--HHHSCHHHHHHHHHH----S--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC-------
T ss_pred             cccHHHHH--HHcCCHHHHHHHHhc----C--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC-------
Confidence            56899999  999999998887764    2  33445 7799999999999975    599999999999876       


Q ss_pred             hHHHHHHHHHhccCCCCcHHHHHHhcCC------HHHHHHHHhcCCCCCcccccCCC-CHHHHHHHcC-----cHHHHHH
Q 037129          132 RVGAAWQIIRMTNKEKNTALHEAVCHQN------VDVVEILTKEDPDYPYSANNYGK-TPLYMAAESR-----SSNMVLA  199 (227)
Q Consensus       132 ~~~~~~~~~~~~~~~~~t~l~~A~~~~~------~~~~~~ll~~~~~~~~~~~~~~~-t~l~~A~~~~-----~~~~v~~  199 (227)
                                 ++..|+||||+|+..++      .+++++|++.|++++ .++..|. ||||+|+..+     ..+++++
T Consensus        71 -----------~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~  138 (186)
T 3t8k_A           71 -----------RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT-ALYKPYKIVVFKNIFNYFVDENEMIPLYKL  138 (186)
T ss_dssp             -----------CCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS-SCBGGGTBCTTGGGGGCCSCHHHHHHHHHH
T ss_pred             -----------CCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC-ccCCCcCchHHHHHHHcCCChhhHHHHHHH
Confidence                       78999999999999886      588999999999955 8899999 9999999844     4579999


Q ss_pred             HHh-cCCCCcccCCCCCCHHHHHHHhcC
Q 037129          200 LLE-NRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       200 Ll~-~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      |++ +|++++.+|..|.||||+|+..|+
T Consensus       139 Ll~~~gad~~~~d~~G~TpL~~A~~~~~  166 (186)
T 3t8k_A          139 IFSQSGLQLLIKDKWGLTALEFVKRCQK  166 (186)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHTTTC
T ss_pred             HHHhcCCCCcccCCCCCCHHHHHHHcCC
Confidence            999 999999999999999999999876

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=1.8e-26  Score=155.30  Aligned_cols=124  Identities=18%  Similarity=0.218  Sum_probs=69.0

Q ss_pred             CCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHH
Q 037129           56 TENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGA  135 (227)
Q Consensus        56 ~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  135 (227)
                      .+.||||+|  +..|+.+++++|++.    +.+++..+..|+||||+|+..|+.+++++|+++|...+.           
T Consensus        13 ~~~t~l~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------   75 (136)
T 2jab_A           13 DLGKKLLEA--ARAGQDDEVRILMAN----GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA-----------   75 (136)
T ss_dssp             HHHHHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-----------
T ss_pred             cccHHHHHH--HHhCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-----------
Confidence            344555555  555555555555553    444455555555555555555555555555555554332           


Q ss_pred             HHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcC
Q 037129          136 AWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENR  204 (227)
Q Consensus       136 ~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  204 (227)
                             .+..|.||||+|+..++.+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++|
T Consensus        76 -------~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           76 -------VDAIGFTPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             -------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             -------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence                   4455556666666666666666666555553 245555666666666666666666665544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=1.3e-26  Score=155.94  Aligned_cols=127  Identities=21%  Similarity=0.212  Sum_probs=115.7

Q ss_pred             hhccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCH
Q 037129           20 IKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTP   99 (227)
Q Consensus        20 ~~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tp   99 (227)
                      ......++||+|+..|+.++|++|++.|.+++..|..|.||||+|  +..++.+++++|++.    +.+++.++..|+||
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~d~~g~t~   83 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA--TAHGHLEIVEVLLKN----GADVNAVDAIGFTP   83 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTCCCH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCcCCCCCCCH
Confidence            344457789999999999999999999999999999999999999  999999999999986    77888999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcC
Q 037129          100 LHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKED  170 (227)
Q Consensus       100 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~  170 (227)
                      ||+|+..|+.+++++|+++|...+.                  .+..|.|||++|+..++.+++++|++.|
T Consensus        84 L~~A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           84 LHLAAFIGHLEIAEVLLKHGADVNA------------------QDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcC------------------cCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999988654                  7889999999999999999999999865

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=2.6e-26  Score=154.67  Aligned_cols=126  Identities=23%  Similarity=0.332  Sum_probs=61.4

Q ss_pred             cccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhh
Q 037129           52 LTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELES  131 (227)
Q Consensus        52 ~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  131 (227)
                      .++..|.||||+|  +..|+.+++++|++.    +.+++.++..|+||||+|+..|+.+++++|+++|...+.       
T Consensus         5 ~~~~~g~t~L~~A--~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-------   71 (137)
T 3c5r_A            5 FTNHRGETLLHIA--SIKGDIPSVEYLLQN----GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT-------   71 (137)
T ss_dssp             CCCTTCCCHHHHH--HHHTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------
T ss_pred             CcCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC-------
Confidence            3444555555555  555555555555543    344444455555555555555555555555555444322       


Q ss_pred             hHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHh
Q 037129          132 RVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE  202 (227)
Q Consensus       132 ~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~  202 (227)
                                 ++..|.||||+|+..++.+++++|++.|+++ +..+..|.|||++|+..+..+++++|.+
T Consensus        72 -----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           72 -----------TGYQNDSPLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             -----------CCGGGCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             -----------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence                       3444455555555555555555555555442 2444455555555554444444444443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=1.2e-25  Score=149.05  Aligned_cols=125  Identities=24%  Similarity=0.271  Sum_probs=116.2

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      +.++|+.|+..|+.+++++|++.|.+++..+..|.||||+|  +..++.+++++|++.    +.+++.++..|.||||+|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A--~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~l~~A   75 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA--ARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLA   75 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHH--HHcCcHHHHHHHHHc----CCCCcccCCCCCcHHHHH
Confidence            45689999999999999999999999999999999999999  999999999999985    677888999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 037129          104 AKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD  172 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~  172 (227)
                      +..++.+++++|+++|...+.                  ++..|.|||++|+..++.+++++|+++|++
T Consensus        76 ~~~~~~~~~~~Ll~~g~~~~~------------------~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           76 ARNGHLEVVKLLLEAGADVNA------------------KDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHcChHHHHHHHHHcCCCCcc------------------cCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999988654                  688999999999999999999999999875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=1.1e-26  Score=156.41  Aligned_cols=116  Identities=24%  Similarity=0.261  Sum_probs=105.0

Q ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcC
Q 037129           91 QVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKED  170 (227)
Q Consensus        91 ~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~  170 (227)
                      .++..|+||||+|+..|+.+++++|++.|...+.                  .+..|.||||+|+..++.+++++|++.|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g   66 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV------------------KDHAGWTPLHEACNHGHLKVVELLLQHK   66 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4688899999999999999999999999887654                  6788999999999999999999999999


Q ss_pred             CCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhc
Q 037129          171 PDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRS  225 (227)
Q Consensus       171 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  225 (227)
                      +++. ..+..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+..+
T Consensus        67 ~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  120 (137)
T 3c5r_A           67 ALVN-TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES  120 (137)
T ss_dssp             CCTT-CCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHH
T ss_pred             Cccc-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhcc
Confidence            8854 78889999999999999999999999999999999999999999987655

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=3.2e-25  Score=146.56  Aligned_cols=114  Identities=24%  Similarity=0.255  Sum_probs=103.4

Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 037129           93 NAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD  172 (227)
Q Consensus        93 ~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~  172 (227)
                      +..|.||||+|+..|+.+++++|++.|...+.                  .+..|.||||+|+..++.+++++|++.|++
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   65 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNR------------------TLEGGRKPLHYAADCGQLEILEFLLLKGAD   65 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTS------------------CCTTSSCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCc------------------cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            55788999999999999999999999987654                  688999999999999999999999999999


Q ss_pred             CCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhc
Q 037129          173 YPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRS  225 (227)
Q Consensus       173 ~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  225 (227)
                      +. ..+..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|...+
T Consensus        66 ~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           66 IN-APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             TT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHH
T ss_pred             CC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHH
Confidence            54 78899999999999999999999999999999999999999999986543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=1.4e-25  Score=170.13  Aligned_cols=139  Identities=21%  Similarity=0.166  Sum_probs=118.3

Q ss_pred             CCchhhhhhhhcccccccHHHHHHHHHhCCccccc------ccCCCCCHHHHHHHc---CCHHHHHHHHHhhhcccccch
Q 037129           57 ENTILHINIISQERENVSTKFVAEILEKCPLLLLQ------VNAKDDTPLHVAAKF---GHSDIVRFLVERAKLTQHENE  127 (227)
Q Consensus        57 g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~g~tpl~~A~~~---~~~~~v~~Ll~~~~~~~~~~~  127 (227)
                      ..++|+.|  +..++.+.++.+++.    +.+++.      .+..|+||||+|+..   ++.+++++|+++|+.++.   
T Consensus       151 ~~~~L~~A--~~~g~~~~v~~ll~~----g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~---  221 (301)
T 2b0o_E          151 EPQRLWTA--ICNRDLLSVLEAFAN----GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA---  221 (301)
T ss_dssp             CHHHHHHH--HHTTCHHHHHHHHHT----TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTC---
T ss_pred             hHHHHhhh--hhccCHHHHHHHHhc----CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCC---
Confidence            34679999  999999999988865    556665      588899999999997   899999999999988664   


Q ss_pred             hhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCC
Q 037129          128 ELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV  207 (227)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  207 (227)
                                     ++..|.||||+|+..|+.+++++|++.|+++. ..+..|.|||++|+..++.+++++|+++|++ 
T Consensus       222 ---------------~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-  284 (301)
T 2b0o_E          222 ---------------KAADGNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAG-  284 (301)
T ss_dssp             ---------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred             ---------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-
Confidence                           78999999999999999999999999999954 8899999999999999999999999999987 


Q ss_pred             cccCCCCCCHHHHHHHhcC
Q 037129          208 SHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       208 ~~~~~~g~t~l~~a~~~~~  226 (227)
                           .|.||||+|+..||
T Consensus       285 -----~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          285 -----TFAFPLHVDYSWVI  298 (301)
T ss_dssp             -----TTSSCCC-------
T ss_pred             -----CCCChhHHHHhcCC
Confidence                 47899999999886

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=1.5e-25  Score=169.87  Aligned_cols=139  Identities=18%  Similarity=0.148  Sum_probs=120.3

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhhcccc------ccCCCCchhhhhhhhcc---cccccHHHHHHHHHhCCcccccccCC
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEIKSLL------TAKTENTILHINIISQE---RENVSTKFVAEILEKCPLLLLQVNAK   95 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~------~~~~g~t~L~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~   95 (227)
                      ..+|+.|+..|+++.|+.|++.|.+++.      .+..|.||||+|  +..   ++.+++++|++.    +.+++.+|..
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A--~~~~~~~~~~iv~~Ll~~----gadvn~~d~~  225 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLA--VKVANQASLPLVDFIIQN----GGHLDAKAAD  225 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHH--HHTCCTTTHHHHHHHHHH----SSCTTCCCTT
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHH--HHhcccCcHHHHHHHHhc----CCCCCCCCCC
Confidence            3569999999999999999999999886      688999999999  876   899999999997    7788999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCc
Q 037129           96 DDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPY  175 (227)
Q Consensus        96 g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~  175 (227)
                      |+||||+|+..|+.+++++|+++|+.++.                  ++..|.|||++|+..++.+++++|++.|++   
T Consensus       226 G~TpLh~A~~~g~~~~v~~Ll~~gad~~~------------------~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---  284 (301)
T 2b0o_E          226 GNTALHYAALYNQPDCLKLLLKGRALVGT------------------VNEAGETALDIARKKHHKECEELLEQAQAG---  284 (301)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCCSC------------------CCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCC------------------cCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---
Confidence            99999999999999999999999998765                  789999999999999999999999998765   


Q ss_pred             ccccCCCCHHHHHHHcCcH
Q 037129          176 SANNYGKTPLYMAAESRSS  194 (227)
Q Consensus       176 ~~~~~~~t~l~~A~~~~~~  194 (227)
                          .|.||||+|+..|+.
T Consensus       285 ----~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          285 ----TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             ----TTSSCCC--------
T ss_pred             ----CCCChhHHHHhcCCc
Confidence                478999999988753

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=5.5e-25  Score=155.37  Aligned_cols=139  Identities=16%  Similarity=0.138  Sum_probs=123.2

Q ss_pred             ccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCccccccc-CCCCCHH
Q 037129           22 QQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVN-AKDDTPL  100 (227)
Q Consensus        22 ~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~tpl  100 (227)
                      ..+.+|||.|+..|+.++++.|++ +.+++..|..|.||||+|  +..|+.+++++|++.    +.+++.++ ..|+|||
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A--~~~~~~~~v~~Ll~~----ga~~~~~~~~~g~tpL  114 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFV--AGLGSDKCVRLLAEA----GADLDHRDMRGGLTAL  114 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCSSSSCCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCcCCCCCCCCHH
Confidence            345678999999999999999998 999999999999999999  999999999999986    77788787 8899999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccC
Q 037129          101 HVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNY  180 (227)
Q Consensus       101 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~  180 (227)
                      |+|+..|+.+++++|+++|+..+.                  ++..|.||||+|+..++                  ...
T Consensus       115 ~~A~~~~~~~~v~~Ll~~ga~~~~------------------~d~~g~tpl~~A~~~~~------------------~~~  158 (183)
T 3deo_A          115 HMAAGYVRPEVVEALVELGADIEV------------------EDERGLTALELAREILK------------------TTP  158 (183)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTC------------------CCTTSCCHHHHHHHHHH------------------TCC
T ss_pred             HHHHhcCcHHHHHHHHHcCCCCcC------------------CCCCCCCHHHHHHHhcc------------------Ccc
Confidence            999999999999999999988654                  78999999999986322                  134


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhc
Q 037129          181 GKTPLYMAAESRSSNMVLALLEN  203 (227)
Q Consensus       181 ~~t~l~~A~~~~~~~~v~~Ll~~  203 (227)
                      +.++|++|+..+..+++++|.++
T Consensus       159 ~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          159 KGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccHHHHHHHcCHHHHHHHHHHh
Confidence            67899999999999999999865

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.92  E-value=2.1e-28  Score=190.37  Aligned_cols=156  Identities=13%  Similarity=0.073  Sum_probs=113.1

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhhcc---ccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcc---cccccCCCCC
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEIKS---LLTAKTENTILHINIISQERENVSTKFVAEILEKCPLL---LLQVNAKDDT   98 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~~~---~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~g~t   98 (227)
                      .+|||.|+..|+.++|++|++.|...   ...+..|.||||+|  +..|+.+++++|++.    +.+   .+..+.. +|
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~A--a~~G~~eiv~~Ll~~----gad~~~~~i~~~~-~T  165 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA--AENGHLHVLNRLCEL----APTEIMAMIQAEN-YH  165 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH--HHTTCHHHHHHHHHS----CTTTHHHHHSHHH-HH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHH--HHcCCHHHHHHHHhC----CCCccccccCCCC-CC
Confidence            47888888888888888888876621   12334567888888  888888888888875    321   1222222 78


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHH-hcCCHHHHHHHHhcCCCCCccc
Q 037129           99 PLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAV-CHQNVDVVEILTKEDPDYPYSA  177 (227)
Q Consensus        99 pl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~-~~~~~~~~~~ll~~~~~~~~~~  177 (227)
                      |||+|+..|+.+++++|+++|+....                ...+..|.||||+|+ ..|+.+++++|++.|+      
T Consensus       166 pLh~Aa~~G~~eiv~~Ll~~ga~~~~----------------~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga------  223 (376)
T 2aja_A          166 AFRLAAENGHLHVLNRLCELAPTEAT----------------AMIQAENYYAFRWAAVGRGHHNVINFLLDCPV------  223 (376)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHH----------------HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH------
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCccch----------------hccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC------
Confidence            88888888888888888888876431                013455778888888 8888888888887542      


Q ss_pred             ccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccC
Q 037129          178 NNYGKTPLYMAAESRSSNMVLALLENRTSVSHEG  211 (227)
Q Consensus       178 ~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~  211 (227)
                        .|.|||+.|+..|+.+++++|+++|++++..+
T Consensus       224 --~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~  255 (376)
T 2aja_A          224 --MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH  255 (376)
T ss_dssp             --HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH
T ss_pred             --ccchHHHHHHHCCCHHHHHHHHhcCccccccc
Confidence              26788888888888888888888887776554

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=6.6e-25  Score=161.83  Aligned_cols=141  Identities=16%  Similarity=0.123  Sum_probs=125.7

Q ss_pred             ccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCccccccc-CCCCCHH
Q 037129           22 QQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVN-AKDDTPL  100 (227)
Q Consensus        22 ~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~tpl  100 (227)
                      ..+.+|||.|+..|+.++|+.|++ +.+++..+..|.||||+|  +..|+.+++++|++.    +.+++.++ ..|+|||
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----ga~~~~~~~~~g~t~L  115 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFV--AGLGSDKCVRLLAEA----GADLDHRDMRGGLTAL  115 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCSSSCCCHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHH--HHCCCHHHHHHHHHc----CCCCCcCCCCCCCCHH
Confidence            445678999999999999999999 999999999999999999  999999999999986    77888888 7899999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccC
Q 037129          101 HVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNY  180 (227)
Q Consensus       101 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~  180 (227)
                      |+|+..|+.+++++|+++|+..+.                  ++..|.||||+|+..+                  ....
T Consensus       116 ~~A~~~g~~~~v~~Ll~~ga~~~~------------------~d~~g~t~l~~A~~~~------------------~~~~  159 (244)
T 3ui2_A          116 HMAAGYVRPEVVEALVELGADIEV------------------EDERGLTALELAREIL------------------KTTP  159 (244)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTCCCHHHHHHHHH------------------TTCC
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCC------------------CCCCCCcHHHHHHHHH------------------hccC
Confidence            999999999999999999988664                  7899999999998521                  1245


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCC
Q 037129          181 GKTPLYMAAESRSSNMVLALLENRT  205 (227)
Q Consensus       181 ~~t~l~~A~~~~~~~~v~~Ll~~g~  205 (227)
                      +.|||++|+..|+.+++++|++++.
T Consensus       160 ~~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          160 KGNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             CCCHHHHHHHcChHHHHHHHHHhcc
Confidence            7899999999999999999998643

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.91  E-value=1.2e-26  Score=180.44  Aligned_cols=168  Identities=15%  Similarity=0.102  Sum_probs=132.0

Q ss_pred             HHHHHHh-cCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHH
Q 037129           27 IFFNAAA-AGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAK  105 (227)
Q Consensus        27 ~l~~a~~-~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~  105 (227)
                      .++.|.. .++.+.++++++.|.+.       .||||+|  +..|+.+++++|++.+.. ....+..+..|.||||+|+.
T Consensus        68 ~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~A--a~~G~~e~v~~Ll~~ga~-~~~~~~~~~~~~tpL~~Aa~  137 (376)
T 2aja_A           68 CLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVA--AITGCSSALDTLCLLLTS-DEIVKVIQAENYQAFRLAAE  137 (376)
T ss_dssp             HHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHH--HHHCCHHHHHHHTTC--C-CSSCC--CHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHH--HHcCCHHHHHHHHHcCCc-HHHHHHhccCCCCHHHHHHH
Confidence            4555655 57889999999877663       4999999  999999999999986431 11122345567889999999


Q ss_pred             cCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCc-ccccCCCCH
Q 037129          106 FGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPY-SANNYGKTP  184 (227)
Q Consensus       106 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~-~~~~~~~t~  184 (227)
                      .|+.+++++|+++|+....               .+....+ .||||+|+..|+.+++++|++.|+++.. ..+..|.||
T Consensus       138 ~G~~eiv~~Ll~~gad~~~---------------~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~Tp  201 (376)
T 2aja_A          138 NGHLHVLNRLCELAPTEIM---------------AMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYA  201 (376)
T ss_dssp             TTCHHHHHHHHHSCTTTHH---------------HHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCccc---------------cccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCH
Confidence            9999999999999964211               0111222 8999999999999999999999988442 277789999


Q ss_pred             HHHHH-HcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcCC
Q 037129          185 LYMAA-ESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSYA  227 (227)
Q Consensus       185 l~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  227 (227)
                      ||+|+ ..|+.+++++|+++|++       |.|||++|+.+|+.
T Consensus       202 L~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~  238 (376)
T 2aja_A          202 FRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEK  238 (376)
T ss_dssp             HHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTT
T ss_pred             HHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCH
Confidence            99999 99999999999998743       78999999998873

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=1.7e-24  Score=152.90  Aligned_cols=115  Identities=24%  Similarity=0.193  Sum_probs=101.8

Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 037129           93 NAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD  172 (227)
Q Consensus        93 ~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~  172 (227)
                      +..|.||||+|+..|+.+++++|++ |...+.                  .+..|.||||+|+..|+.+++++|++.|++
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~------------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  101 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDA------------------VDENGRTALLFVAGLGSDKCVRLLAEAGAD  101 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTC------------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCC------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4567899999999999999999999 766544                  688999999999999999999999999999


Q ss_pred             CCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          173 YPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       173 ~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      +....+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..++
T Consensus       102 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~  155 (183)
T 3deo_A          102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK  155 (183)
T ss_dssp             TTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH
T ss_pred             CCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc
Confidence            653434889999999999999999999999999999999999999999988653

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=3e-25  Score=161.42  Aligned_cols=136  Identities=19%  Similarity=0.163  Sum_probs=94.8

Q ss_pred             cCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHh-hhcccccchhhhhh
Q 037129           54 AKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVER-AKLTQHENEELESR  132 (227)
Q Consensus        54 ~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~  132 (227)
                      +..|.||||+|  +..|+.++++.|++.    +.+++.++..|+||||+|+..|+.+++++|++. |...+.        
T Consensus        70 ~~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~--------  135 (222)
T 3ehr_A           70 AESIDNPLHEA--AKRGNLSWLRECLDN----RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ--------  135 (222)
T ss_dssp             EEEESCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCC--------
T ss_pred             ccccccccccc--cccCcHHHHHHHHhC----CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccc--------
Confidence            44677888888  888888888888774    566777788888888888888888888888887 666544        


Q ss_pred             HHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCC
Q 037129          133 VGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGP  212 (227)
Q Consensus       133 ~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~  212 (227)
                                ++..|.||||+|+..|+.+++++|++.|+++ +..+..|.|||++|+..+..++++.|++.|+.....+.
T Consensus       136 ----------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~  204 (222)
T 3ehr_A          136 ----------QNKLGDTALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNA  204 (222)
T ss_dssp             ----------CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC--------------
T ss_pred             ----------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccch
Confidence                      6777888888888888888888888888874 37777888888888888888888888888877776665


Q ss_pred             CC
Q 037129          213 NG  214 (227)
Q Consensus       213 ~g  214 (227)
                      .|
T Consensus       205 ~~  206 (222)
T 3ehr_A          205 ED  206 (222)
T ss_dssp             --
T ss_pred             hh
Confidence            44

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=2.4e-24  Score=156.63  Aligned_cols=117  Identities=26%  Similarity=0.237  Sum_probs=108.0

Q ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhc-
Q 037129           91 QVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKE-  169 (227)
Q Consensus        91 ~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~-  169 (227)
                      ..+..|.||||+|+..|+.+++++|++.|...+.                  ++..|.||||+|+..|+.+++++|++. 
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  129 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG------------------LDKAGSTALYWACHGGHKDIVEMLFTQP  129 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHTTST
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCccc------------------cCCCCCCHHHHHHHcCCHHHHHHHHcCC
Confidence            3577889999999999999999999999987654                  688999999999999999999999998 


Q ss_pred             CCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          170 DPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       170 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      |+++ +..+..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..|+
T Consensus       130 g~~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  185 (222)
T 3ehr_A          130 NIEL-NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAAC  185 (222)
T ss_dssp             TCCC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHH
T ss_pred             CCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhH
Confidence            7774 4889999999999999999999999999999999999999999999987764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=4e-25  Score=162.97  Aligned_cols=109  Identities=25%  Similarity=0.236  Sum_probs=55.5

Q ss_pred             CCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHH
Q 037129           56 TENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGA  135 (227)
Q Consensus        56 ~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  135 (227)
                      .|.||||+|  +..|+.++++.|++     +.+++.++..|+||||+|+..|+.+++++|+++|+..+.           
T Consensus        44 ~g~t~L~~A--~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-----------  105 (244)
T 3ui2_A           44 EYETPWWTA--ARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH-----------  105 (244)
T ss_dssp             HHHHHHHHH--HTTTCHHHHHHTTT-----TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC-----------
T ss_pred             CCCCHHHHH--HHcCCHHHHHHHHc-----CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCc-----------
Confidence            445555555  55555555555544     334444555555555555555555555555555544432           


Q ss_pred             HHHHHHhcc-CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHH
Q 037129          136 AWQIIRMTN-KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAE  190 (227)
Q Consensus       136 ~~~~~~~~~-~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~  190 (227)
                             .+ ..|.||||+|+..|+.+++++|++.|+++. ..+..|.||||+|+.
T Consensus       106 -------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          106 -------RDMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELARE  153 (244)
T ss_dssp             -------CCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred             -------CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHH
Confidence                   22 445555555555555555555555555522 445555555555543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=3.4e-24  Score=141.60  Aligned_cols=109  Identities=19%  Similarity=0.156  Sum_probs=69.8

Q ss_pred             CCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHH
Q 037129           56 TENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGA  135 (227)
Q Consensus        56 ~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  135 (227)
                      .|.||||+|  +..|+.+++++|++.    +.+++..+..|+||||+|+..++.+++++|+++|...+.           
T Consensus         6 ~~~~~l~~A--~~~~~~~~v~~ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------   68 (123)
T 3aaa_C            6 MCDKEFMWA--LKNGDLDEVKDYVAK----GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-----------   68 (123)
T ss_dssp             -CHHHHHHH--HHTTCHHHHHHHHHT----TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTC-----------
T ss_pred             ccchHHHHH--HHcCCHHHHHHHHHc----CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc-----------
Confidence            455666666  666666666666653    445566666666666666666666666666666655443           


Q ss_pred             HHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHH
Q 037129          136 AWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAA  189 (227)
Q Consensus       136 ~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~  189 (227)
                             ++..|.||||+|+..++.+++++|++.|+++ +..+..|.|||++|.
T Consensus        69 -------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           69 -------PDKHHITPLLSAVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATD  114 (123)
T ss_dssp             -------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCC
T ss_pred             -------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhC
Confidence                   5566666777776666666777666666663 356666667776663

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.1e-22  Score=127.53  Aligned_cols=93  Identities=32%  Similarity=0.490  Sum_probs=85.6

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCC
Q 037129           95 KDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYP  174 (227)
Q Consensus        95 ~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~  174 (227)
                      +|+||||+|+..|+.+++++|++.|...+.                  ++..|.||||+|+..++.+++++|++.|+++.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~------------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~   62 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA------------------KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN   62 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcc------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            488999999999999999999999988664                  78899999999999999999999999999954


Q ss_pred             cccccCCCCHHHHHHHcCcHHHHHHHHhcCCC
Q 037129          175 YSANNYGKTPLYMAAESRSSNMVLALLENRTS  206 (227)
Q Consensus       175 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  206 (227)
                       .++..|.||||+|+..++.+++++|+++|++
T Consensus        63 -~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           63 -AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             -CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             -ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence             8899999999999999999999999999975

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.89  E-value=3.3e-23  Score=135.18  Aligned_cols=109  Identities=25%  Similarity=0.309  Sum_probs=99.1

Q ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcC
Q 037129           91 QVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKED  170 (227)
Q Consensus        91 ~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~  170 (227)
                      .+|..|+||||+|+..|+.+++++|+++|...+.                  .+..|.||||+|+..++.+++++|++.|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~------------------~d~~g~t~L~~A~~~~~~~~~~~Ll~~g   65 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA------------------RSKDGNTPLHLAAKNGHAEIVKLLLAKG   65 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSC------------------CCSSSCCTTHHHHTTTCHHHHHHHTTTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC------------------cCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            4688999999999999999999999999987654                  6889999999999999999999999999


Q ss_pred             CCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHH
Q 037129          171 PDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTAL  218 (227)
Q Consensus       171 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l  218 (227)
                      +++. ..+..|.||||+|+..++.+++++|+++|++++.++..|.+|-
T Consensus        66 ~~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           66 ADVN-ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             CCTT-CCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9854 7888999999999999999999999999999999999998874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.89  E-value=5.4e-23  Score=159.42  Aligned_cols=141  Identities=16%  Similarity=0.186  Sum_probs=82.2

Q ss_pred             HHHHHHHhc-CCchHHHhhHhhhhcccccc--CCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037129           26 PIFFNAAAA-GNSEPFKDMAGEEIKSLLTA--KTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHV  102 (227)
Q Consensus        26 ~~l~~a~~~-g~~~~v~~ll~~~~~~~~~~--~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~  102 (227)
                      ++||.|+.. |++++|+.|++.|.+++..+  ..|.||||+|  +..++.+++++|++.    +.+++..|..|+||||+
T Consensus       201 t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~A--a~~g~~~iv~~LL~~----Gadvn~~d~~G~TpLh~  274 (368)
T 3jue_A          201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQA--TAANSLLACEFLLQN----GANVNQADSAGRGPLHH  274 (368)
T ss_dssp             HHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             cHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHH--HHCCCHHHHHHHHHc----CCCCCCCCCCCCCHHHH
Confidence            466777776 77777777777666666555  5666777777  667777777766664    55666666677777777


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCC--CcccccC
Q 037129          103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDY--PYSANNY  180 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~--~~~~~~~  180 (227)
                      |+..|+.+++++|+++|+..+.                  .+..|.||||+|+..++.+++++|+..+...  ....+..
T Consensus       275 A~~~g~~~~v~~LL~~Gad~~~------------------~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~  336 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGADLGA------------------RDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAG  336 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------
T ss_pred             HHHcCcHHHHHHHHHCcCCCCC------------------cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCC
Confidence            7777777777777777666543                  5666677777777777777777766554321  1123334


Q ss_pred             CCCHHHHHHH
Q 037129          181 GKTPLYMAAE  190 (227)
Q Consensus       181 ~~t~l~~A~~  190 (227)
                      +.|+++.+..
T Consensus       337 ~~t~l~i~~~  346 (368)
T 3jue_A          337 DETYLDIFRD  346 (368)
T ss_dssp             ----------
T ss_pred             CCCHHHHHHH
Confidence            5555555443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.89  E-value=9.4e-23  Score=158.08  Aligned_cols=144  Identities=17%  Similarity=0.163  Sum_probs=114.4

Q ss_pred             cCCCCchhhhhhhhcc-cccccHHHHHHHHHhCCccccccc--CCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhh
Q 037129           54 AKTENTILHINIISQE-RENVSTKFVAEILEKCPLLLLQVN--AKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELE  130 (227)
Q Consensus        54 ~~~g~t~L~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~--~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  130 (227)
                      ...+.++||.|  +.. ++.++++.|++.    +.+++..+  ..|.||||+|+..|+.+++++|+++|++.+.      
T Consensus       196 ~~~~~t~L~~A--a~~~g~~~~v~~LL~~----Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~------  263 (368)
T 3jue_A          196 SLHPGALLFRA--SGHPPSLPTMADALAH----GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ------  263 (368)
T ss_dssp             -CCHHHHHHHH--TSSSCCHHHHHHHHHT----TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------
T ss_pred             cCCCCcHHHHH--HHccCCHHHHHHHHHc----CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC------
Confidence            33456899999  999 999999999986    77788887  8899999999999999999999999988765      


Q ss_pred             hhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcC---CCC
Q 037129          131 SRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENR---TSV  207 (227)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g---~~~  207 (227)
                                  .+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|+..+   .+.
T Consensus       264 ------------~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~  330 (368)
T 3jue_A          264 ------------ADSAGRGPLHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEA  330 (368)
T ss_dssp             ------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----
T ss_pred             ------------CCCCCCCHHHHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccc
Confidence                        7899999999999999999999999999995 488999999999999999999999999876   444


Q ss_pred             cccCCCCCCHHHHHH
Q 037129          208 SHEGPNGKTALHAAA  222 (227)
Q Consensus       208 ~~~~~~g~t~l~~a~  222 (227)
                      ...+..+.|+++.+.
T Consensus       331 ~~~~~~~~t~l~i~~  345 (368)
T 3jue_A          331 AQGQAGDETYLDIFR  345 (368)
T ss_dssp             ---------------
T ss_pred             cccCCCCCCHHHHHH
Confidence            455666778877654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=3.2e-22  Score=150.07  Aligned_cols=123  Identities=15%  Similarity=0.131  Sum_probs=107.8

Q ss_pred             HHHHHHHhcCCchHHHhhHhhhhccc------cccCCCCchhhhhhhhcc---cccccHHHHHHHHHhCCcccccccCCC
Q 037129           26 PIFFNAAAAGNSEPFKDMAGEEIKSL------LTAKTENTILHINIISQE---RENVSTKFVAEILEKCPLLLLQVNAKD   96 (227)
Q Consensus        26 ~~l~~a~~~g~~~~v~~ll~~~~~~~------~~~~~g~t~L~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~g   96 (227)
                      .+|+.|+..|+.+.++.+++.|.+++      ..+..|.||||+|  +..   ++.+++++|++.    +.+++.+|..|
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A--~~~~~~~~~~~v~~Ll~~----ga~in~~d~~g  205 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLA--VRSVDRTSLHIVDFLVQN----SGNLDKQTGKG  205 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHH--HHHCCTTTHHHHHHHHHH----CSCTTCCCTTC
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHH--HHhcccchHHHHHHHHHC----CCCccccCCCC
Confidence            46899999999999999999888854      3367899999999  888   889999999987    77888899999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 037129           97 DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD  172 (227)
Q Consensus        97 ~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~  172 (227)
                      +||||+|+..|+.+++++|+++|++.+.                  ++..|.||||+|+..|+.+++++|++.|++
T Consensus       206 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~------------------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          206 STALHYCCLTDNAECLKLLLRGKASIEI------------------ANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCC------------------ccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999988665                  788899999999999999999999988775

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=1.2e-21  Score=146.94  Aligned_cols=129  Identities=21%  Similarity=0.184  Sum_probs=108.8

Q ss_pred             CchhhhhhhhcccccccHHHHHHHHHhCCcc--cccccCCCCCHHHHHHHc---CCHHHHHHHHHhhhcccccchhhhhh
Q 037129           58 NTILHINIISQERENVSTKFVAEILEKCPLL--LLQVNAKDDTPLHVAAKF---GHSDIVRFLVERAKLTQHENEELESR  132 (227)
Q Consensus        58 ~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~g~tpl~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~  132 (227)
                      .++|+.|  +..++.+.++.+++.+......  ++..+..|+||||+|+..   ++.+++++|+++|+.++.        
T Consensus       131 l~~l~~a--~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~--------  200 (278)
T 1dcq_A          131 LHSLCEA--VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK--------  200 (278)
T ss_dssp             HHHHHHH--HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC--------
T ss_pred             hhhhhhH--hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccc--------
Confidence            4678899  9999998888887752211111  445578899999999999   899999999999988665        


Q ss_pred             HHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCC
Q 037129          133 VGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV  207 (227)
Q Consensus       133 ~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  207 (227)
                                ++..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++|++.
T Consensus       201 ----------~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          201 ----------QTGKGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             ----------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ----------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                      7889999999999999999999999999995 488999999999999999999999999998764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=1.1e-21  Score=122.95  Aligned_cols=91  Identities=26%  Similarity=0.376  Sum_probs=49.2

Q ss_pred             CCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHH
Q 037129           57 ENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAA  136 (227)
Q Consensus        57 g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  136 (227)
                      |.||||+|  +..++.+++++|++.    +.+++.++..|+||||+|+..|+.+++++|+++|+..+.            
T Consensus         2 g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------------   63 (93)
T 1n0q_A            2 GRTPLHLA--ARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA------------   63 (93)
T ss_dssp             -CCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------------
T ss_pred             CCcHHHHH--HHcCCHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------------
Confidence            45555555  555555555555543    444555555555555555555555555555555554332            


Q ss_pred             HHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 037129          137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDP  171 (227)
Q Consensus       137 ~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~  171 (227)
                            ++..|.||||+|+..++.+++++|++.|+
T Consensus        64 ------~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           64 ------KDKNGRTPLHLAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             ------CCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             ------cCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence                  44555555555555555555555555543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=3.5e-21  Score=125.51  Aligned_cols=108  Identities=24%  Similarity=0.275  Sum_probs=75.0

Q ss_pred             cccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhh
Q 037129           52 LTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELES  131 (227)
Q Consensus        52 ~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  131 (227)
                      +.|..|.||||+|  +..++.+++++|++.    +.+++..+..|+||||+|+..++.+++++|+++|...+.       
T Consensus         4 ~~d~~g~t~L~~A--~~~~~~~~~~~Ll~~----g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-------   70 (115)
T 2l6b_A            4 WGSKDGNTPLHNA--AKNGHAEEVKKLLSK----GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA-------   70 (115)
T ss_dssp             CCSCSSCCHHHHH--HHHTCHHHHHHHTTT----TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTC-------
T ss_pred             ccCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcc-------
Confidence            4566777777777  777777777777764    555666777777777777777777777777777766543       


Q ss_pred             hHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCH
Q 037129          132 RVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTP  184 (227)
Q Consensus       132 ~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~  184 (227)
                                 ++..|.||||+|+..++.+++++|++.|+++. ..+..|.+|
T Consensus        71 -----------~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n-~~~~~~~~~  111 (115)
T 2l6b_A           71 -----------RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN-ARSWGSSHH  111 (115)
T ss_dssp             -----------CCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHH-HHSCCCC--
T ss_pred             -----------cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-cCCcccccc
Confidence                       56677777777777777777777777777743 555566555

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=6.5e-19  Score=113.75  Aligned_cols=91  Identities=23%  Similarity=0.372  Sum_probs=64.7

Q ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcC
Q 037129           91 QVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKED  170 (227)
Q Consensus        91 ~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~  170 (227)
                      ..+..|.||||+|+..|+.+++++|++.|...+.                  ++..|.||||+|+..++.+++++|++.|
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~------------------~d~~g~tpLh~A~~~~~~~~v~~Ll~~g   80 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAA------------------KDKNGSTPLHLAARNGHLEVVKLLLEAG   80 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTC------------------CCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCc------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4566677777777777777777777777766543                  5677777777777777777777777777


Q ss_pred             CCCCcccccCCCCHHHHHHHcCcHHHHHHH
Q 037129          171 PDYPYSANNYGKTPLYMAAESRSSNMVLAL  200 (227)
Q Consensus       171 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L  200 (227)
                      +++. ..+..|.||||+|+..++.+++++|
T Consensus        81 a~~~-~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           81 ADVX-AQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCTT-CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCcc-ccccCCCcHHHHHHHcCCHHHHHHh
Confidence            7743 6677777777777777777777765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.77  E-value=2e-18  Score=111.42  Aligned_cols=84  Identities=27%  Similarity=0.298  Sum_probs=77.4

Q ss_pred             hccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHH
Q 037129          142 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAA  221 (227)
Q Consensus       142 ~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a  221 (227)
                      ..+.+|.|+||+|+..|+.+++++|++.|+++. ..+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            467899999999999999999999999999854 7789999999999999999999999999999999999999999999


Q ss_pred             HHhcC
Q 037129          222 AMRSY  226 (227)
Q Consensus       222 ~~~~~  226 (227)
                      +..|+
T Consensus        98 ~~~~~  102 (110)
T 2zgd_A           98 IDNGN  102 (110)
T ss_dssp             HHHTC
T ss_pred             HHcCC
Confidence            99886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	227
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.001
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.001
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.003
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	6e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.002
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.002
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 2e-14
 Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 19/129 (14%)

Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
           TPLHVA+  GH  IV+ L++R               GA+     ++N +  T LH A   
Sbjct: 2   TPLHVASFMGHLPIVKNLLQR---------------GAS---PNVSNVKVETPLHMAARA 43

Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA 217
            + +V + L +       +     +TPL+ AA    +NMV  LLEN  + +     G T 
Sbjct: 44  GHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 102

Query: 218 LHAAAMRSY 226
           LH AA   +
Sbjct: 103 LHIAAREGH 111

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 3e-13
 Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 23/227 (10%)

Query: 15  DSNREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVS 74
             N   K  + P+   A    N +  K +          A    T LHI     + E   
Sbjct: 157 HPNAAGKNGLTPLHV-AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA- 214

Query: 75  TKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVG 134
                  L +        + +  TPLH+AA+ GH+++V  L+ +       N+   + + 
Sbjct: 215 -----RSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH 269

Query: 135 AAWQI---------------IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANN 179
              Q                +  T +   T LH A  + N+ +V+    +      +   
Sbjct: 270 LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK-FLLQHQADVNAKTK 328

Query: 180 YGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
            G +PL+ AA+   +++V  LL+N  S +    +G T L  A    Y
Sbjct: 329 LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY 375

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 2e-12
 Identities = 49/204 (24%), Positives = 79/204 (38%), Gaps = 22/204 (10%)

Query: 31  AAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLL 90
           A+  G+    K++        ++     T LH+   +   E      VA+ L +    + 
Sbjct: 7   ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE------VAKYLLQNKAKVN 60

Query: 91  QVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQI----------- 139
                D TPLH AA+ GH+++V+ L+E             + +  A +            
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 140 ----IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSN 195
                    K+  T LH A  +  V V E+L + D   P +A   G TPL++A    + +
Sbjct: 121 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLD 179

Query: 196 MVLALLENRTSVSHEGPNGKTALH 219
           +V  LL    S      NG T LH
Sbjct: 180 IVKLLLPRGGSPHSPAWNGYTPLH 203

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 5e-12
 Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 53/168 (31%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
            N  +    TPLH+AA+ GH+++ ++L++                 A    +    K+  
Sbjct: 26  PNVSNVKVETPLHMAARAGHTEVAKYLLQN---------------KAK---VNAKAKDDQ 67

Query: 149 TALHEAVCHQNVDVVEILTKEDPD--------------------------------YPYS 176
           T LH A    + ++V++L + + +                                    
Sbjct: 68  TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC 127

Query: 177 ANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMR 224
               G TPL++AA+     +   LLE     +  G NG T LH A   
Sbjct: 128 MTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH 175

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 18/75 (24%)

Query: 92  VNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTAL 151
                 +PLH AA+ GH+DIV  L++                GA+       + +  T L
Sbjct: 326 KTKLGYSPLHQAAQQGHTDIVTLLLKN---------------GAS---PNEVSSDGTTPL 367

Query: 152 HEAVCHQNVDVVEIL 166
             A     + V ++L
Sbjct: 368 AIAKRLGYISVTDVL 382

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 2e-12
 Identities = 21/126 (16%), Positives = 48/126 (38%), Gaps = 20/126 (15%)

Query: 98  TPLHVAAKFGHSDIVRFLVERA--------------------KLTQHENEELESRVGAAW 137
           T L  AA+ GH ++++ L++                           + E +   +    
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209

Query: 138 QIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMV 197
             + +  +   T L  AV  +++ +V+ L +++       ++ GKT L +A E +   + 
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269

Query: 198 LALLEN 203
             L + 
Sbjct: 270 ELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 22/81 (27%), Positives = 37/81 (45%)

Query: 146 EKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRT 205
           E N  L +AV +++VD+V+ L +   +  +     G TPL+ A +    ++V  LL +  
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 206 SVSHEGPNGKTALHAAAMRSY 226
                  NG T    AA+   
Sbjct: 64  DPVLRKKNGATPFLLAAIAGS 84

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 6e-07
 Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 12/138 (8%)

Query: 93  NAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALH 152
           +    T    AA +G    ++FL +R        +          +      K   TAL 
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT--------KEDQERLRKGGATALM 153

Query: 153 EAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLA----LLENRTSVS 208
           +A    +V+V++IL  E      + +N G+  L  A  S   + V A    LL++   V+
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN 213

Query: 209 HEGPNGKTALHAAAMRSY 226
             G  GKT L  A  + +
Sbjct: 214 VRGERGKTPLILAVEKKH 231

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 8e-07
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 20/78 (25%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
           VN + +   TPL +A +  H  +V+ L+E+  +                  I  T+ +  
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-----------------INDTDSDGK 254

Query: 149 TALHEAVCHQNVDVVEIL 166
           TAL  AV  +   + E+L
Sbjct: 255 TALLLAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 9e-07
 Identities = 32/172 (18%), Positives = 52/172 (30%), Gaps = 29/172 (16%)

Query: 57  ENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLV 116
           +N +L   +     +N     V ++LE    +  Q      TPLH A +    DIV  L+
Sbjct: 5   DNHLLIKAV-----QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 117 ERAKLTQHENEELESRVGAAWQ---------------IIRMTNKEKNTALHEAVCHQNVD 161
                     +   +    A                  +   +    TA  EA  +  V 
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 162 VVEILTKEDPD---------YPYSANNYGKTPLYMAAESRSSNMVLALLENR 204
            ++ L K   +                 G T L  AAE     ++  LL+  
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 9e-07
 Identities = 32/132 (24%), Positives = 47/132 (35%), Gaps = 18/132 (13%)

Query: 95  KDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEA 154
           +D+  L  A +    D+V+ L+E                GA   +     +   T LH A
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEG---------------GA--NVNFQEEEGGWTPLHNA 46

Query: 155 VCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNG 214
           V     D+VE L       P      G TP  +AA + S  ++   L     V+     G
Sbjct: 47  VQMSREDIVE-LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105

Query: 215 KTALHAAAMRSY 226
            TA   AA+   
Sbjct: 106 FTAFMEAAVYGK 117

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 55  KTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRF 114
           +   T L +       E      V  +LE+  + +   ++   T L +A +     I   
Sbjct: 217 ERGKTPLILA-----VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

Query: 115 LVER 118
           L +R
Sbjct: 272 LCKR 275

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.8 bits (151), Expect = 2e-12
 Identities = 35/261 (13%), Positives = 77/261 (29%), Gaps = 46/261 (17%)

Query: 2   NPVSIEIEEAPLLDSNREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTIL 61
           +P+ I       + ++ E K +++            E    +  +         + N   
Sbjct: 17  SPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQ 76

Query: 62  HINIISQERENVSTKFVAEILEKCPLLLLQVNAKDD----TPLHVAAKFGHSDIVRFLVE 117
                           + E+ +  P   L +N   D    TPLH      + ++V+ LV+
Sbjct: 77  QHVSFD--------SLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 128

Query: 118 RAKLTQHENEELESRVGAAWQ-------------------IIRMTNKEKNTALHEAVCHQ 158
                 + +   ES +  A +                    + + +    T LH  +   
Sbjct: 129 HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITS 188

Query: 159 NVD------------VVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENR-- 204
            +             ++  + K+      S  N  ++        R  +++  L      
Sbjct: 189 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 248

Query: 205 -TSVSHEGPNGKTALHAAAMR 224
              ++ +  NG T L+ AA  
Sbjct: 249 ANMLNAQDSNGDTCLNIAARL 269

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.7 bits (130), Expect = 1e-09
 Identities = 32/213 (15%), Positives = 67/213 (31%), Gaps = 9/213 (4%)

Query: 12  PLLDSNREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERE 71
             L+ N  + +  +       +  N E  K +       L       + L   + S    
Sbjct: 95  TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 154

Query: 72  NVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELES 131
           +  T     +L+     L+  ++ + T LH                 AK           
Sbjct: 155 DSGT--FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAA---AKYYLDILMGWIV 209

Query: 132 RVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKED--PDYPYSANNYGKTPLYMAA 189
           +       I+    EK +  ++    +   ++E L  +    +   + ++ G T L +AA
Sbjct: 210 KKQNR--PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 267

Query: 190 ESRSSNMVLALLENRTSVSHEGPNGKTALHAAA 222
              + ++V ALL+          +G   +   A
Sbjct: 268 RLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 1/108 (0%)

Query: 120 KLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNV-DVVEILTKEDPDYPYSAN 178
           +L   E +E+ + +              N           + +V +       +     +
Sbjct: 45  RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVD 104

Query: 179 NYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
            +G TPL+      +  +V  L+++ ++  +    G++ L  A     
Sbjct: 105 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN 152

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 8e-11
 Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 22/135 (16%)

Query: 91  QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
           QVNA +    TPLH AA     +I   L+E                GA        +  +
Sbjct: 95  QVNAVNQNGCTPLHYAASKNRHEIAVMLLEG---------------GAN---PDAKDHYE 136

Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
            TA+H A    N+ ++ IL           +  G TPL++A +         L+    S+
Sbjct: 137 ATAMHRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 195

Query: 208 SHEGPNGKTALHAAA 222
             E    KT L  A 
Sbjct: 196 YIENKEEKTPLQVAK 210

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 19/149 (12%)

Query: 78  VAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAW 137
           + E +     L  + +    T LH A   GH++IV FL++                    
Sbjct: 19  LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL------------------G 60

Query: 138 QIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMV 197
             +   +    + LH A      ++V+ L  +      + N  G TPL+ AA      + 
Sbjct: 61  VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA-QVNAVNQNGCTPLHYAASKNRHEIA 119

Query: 198 LALLENRTSVSHEGPNGKTALHAAAMRSY 226
           + LLE   +   +     TA+H AA +  
Sbjct: 120 VMLLEGGANPDAKDHYEATAMHRAAAKGN 148

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.1 bits (136), Expect = 2e-10
 Identities = 22/90 (24%), Positives = 36/90 (40%)

Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
                    +  TALH A    N+ +V+ L  E        +  GKTP+ +AA+     +
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236

Query: 197 VLALLENRTSVSHEGPNGKTALHAAAMRSY 226
           V+ L++   SV        TA   A   ++
Sbjct: 237 VMYLIQQGASVEAVDATDHTARQLAQANNH 266

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 51.3 bits (121), Expect = 2e-08
 Identities = 15/97 (15%), Positives = 40/97 (41%), Gaps = 18/97 (18%)

Query: 72  NVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELES 131
             +   V  ++ +      + +    TP+ +AA+ G  ++V +L+++             
Sbjct: 197 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ------------- 243

Query: 132 RVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
             GA+   +   +   +TA   A  + + ++V+I  +
Sbjct: 244 --GAS---VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.3 bits (116), Expect = 9e-08
 Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 142 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL 201
             +++  T +  A     ++VV  L ++      + +    T   +A  +   N+V    
Sbjct: 216 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFD 274

Query: 202 ENR 204
             R
Sbjct: 275 RCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 14/80 (17%)

Query: 86  PLLLLQVNAKDD----TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIR 141
           P+    VN  D     T LH  A    ++    L+                 GA    + 
Sbjct: 19  PITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA-------GAD---VN 68

Query: 142 MTNKEKNTALHEAVCHQNVD 161
             + ++NT L  AV  +   
Sbjct: 69  AMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.5 bits (93), Expect = 8e-05
 Identities = 12/98 (12%), Positives = 29/98 (29%), Gaps = 25/98 (25%)

Query: 97  DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC 156
           ++P+ +  +   S  +   + R  +                    +  +   T LH    
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNI------------------IDPRHNRTVLHWIAS 42

Query: 157 HQNVDVVEILTKEDPDYPYSA-------NNYGKTPLYM 187
           + + +  E L   +     +A       +    TPL +
Sbjct: 43  NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML 80

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 11/82 (13%)

Query: 146 EKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRT 205
           E    LH      +  + E +T+E  +       + +T L+  A + S+     L+ +  
Sbjct: 1   ESPIKLHTEAAG-SYAITEPITRESVNII--DPRHNRTVLHWIASNSSAEKSEDLIVHEA 57

Query: 206 S--------VSHEGPNGKTALH 219
                    V+    +  T L 
Sbjct: 58  KECIAAGADVNAMDCDENTPLM 79

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 8/40 (20%)

Query: 88  LLLQ----VNAKDD---TPLHVAAKFGHSDIVRFLVERAK 120
            L+Q    V A D    T   +A    H +IV    +R +
Sbjct: 239 YLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF-DRCR 277

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.9 bits (128), Expect = 2e-09
 Identities = 27/131 (20%), Positives = 40/131 (30%), Gaps = 16/131 (12%)

Query: 97  DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC 156
           DT LH+A    H   + FL+                  A  + + + N    TALH A  
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGF---------------SAGHEYLDLQNDLGQTALHLAAI 54

Query: 157 HQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKT 216
                 VE            A   G T L++A   R+      LL+ R S   +  +   
Sbjct: 55  LGEASTVEK-LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL 113

Query: 217 ALHAAAMRSYA 227
                     +
Sbjct: 114 TQSQDCTPDTS 124

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (109), Expect = 7e-07
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 139 IIRMTNKEKNTALHEAVCHQNVDVVEILTKE--DPDYPYSANNYGKTPLYMAAESRSSNM 196
           +     ++ +TALH AV HQ+   ++ L       +Y    N+ G+T L++AA    ++ 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 197 VLALLENRTSVSHEGPNGKTALHAAAMR 224
           V  L      V      G TALH A   
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRV 88

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 5e-05
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
             + +       T LH AV  Q   V+E+L K   D P +    G+TPL  A    +  +
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPIL 240

Query: 197 VLALLEN 203
              L  +
Sbjct: 241 ARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 1/134 (0%)

Query: 93  NAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALH 152
                      ++    D              ENEE         Q+    N + +T LH
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLH 163

Query: 153 EAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGP 212
            AV H++ ++V +L     D        G+TPL++A E+++++++  LL+     +    
Sbjct: 164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY 223

Query: 213 NGKTALHAAAMRSY 226
            G+T L +A +R  
Sbjct: 224 GGRTPLGSALLRPN 237

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 3/30 (10%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVER 118
             A+     TPL  A    +  + R L   
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 18/69 (26%)

Query: 98  TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
           TPLH+A +   + ++  L++                GA             T L  A+  
Sbjct: 194 TPLHLAVEAQAASVLELLLKA---------------GAD---PTARMYGGRTPLGSALLR 235

Query: 158 QNVDVVEIL 166
            N  +  +L
Sbjct: 236 PNPILARLL 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 40/178 (22%)

Query: 58  NTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRF 114
           +T LH+ +I Q           + L         ++ ++D   T LH+AA  G +  V  
Sbjct: 10  DTALHLAVIHQHEP------FLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 115 LVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYP 174
           L                        + +  +  +TALH A   +      +L +  P +P
Sbjct: 64  LYAA------------------GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHP 105

Query: 175 YSANNYGKTP-------------LYMAAESRSSNMVLALLENRTSVSHEGPNGKTALH 219
             A++   T                 +  +  +       + R  +  E  +G T LH
Sbjct: 106 RDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.0 bits (123), Expect = 9e-09
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
                   K   TALH A      +V+++L +   D     +  G TPL+ AA       
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEA 247

Query: 197 VLALLENRTSVSHEGPNGKTALHAAA 222
              L+EN   +      G+TA   A 
Sbjct: 248 CRILVENLCDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.2 bits (113), Expect = 2e-07
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 19/130 (14%)

Query: 61  LHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAK 120
           + I    +E E +  +   + L    +  ++      T LHVAA  G++++++ L++   
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-- 221

Query: 121 LTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNY 180
                              + + + +  T LH A      +   IL +   D   + N  
Sbjct: 222 ----------------RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKV 264

Query: 181 GKTPLYMAAE 190
           G+T   +A E
Sbjct: 265 GQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.4 bits (85), Expect = 8e-04
 Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 18/74 (24%)

Query: 97  DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC 156
            TPLH AA +G  +  R LVE                      +   NK   TA   A  
Sbjct: 233 WTPLHAAAHWGKEEACRILVEN---------------LCD---MEAVNKVGQTAFDVADE 274

Query: 157 HQNVDVVEILTKED 170
                + E+  K++
Sbjct: 275 DILGYLEELQKKQN 288

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.5 bits (117), Expect = 8e-08
 Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 18/139 (12%)

Query: 91  QVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTA 150
            + A++     +AA+ GH  ++  L E                 A  +I+ M   E   A
Sbjct: 121 VIQAENYQAFRLAAENGHLHVLNRLCEL----------------APTEIMAMIQAENYHA 164

Query: 151 LHEAVCHQNVDVVEILTKE--DPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
              A  + ++ V+  L +                   + A      N++  LL+    ++
Sbjct: 165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 224

Query: 209 HEGPNGKTALHAAAMRSYA 227
           +   +             A
Sbjct: 225 YAEIHEFEYGEKYVNPFIA 243

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.9 bits (105), Expect = 3e-06
 Identities = 11/124 (8%), Positives = 28/124 (22%), Gaps = 9/124 (7%)

Query: 88  LLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
            LL              ++G   +  F+       +  ++  +         +   ++  
Sbjct: 215 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL 274

Query: 148 N-----TALHEAVCHQNVDVVEILTK----EDPDYPYSANNYGKTPLYMAAESRSSNMVL 198
                   L        +D +  L      +      +        L +A    +     
Sbjct: 275 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 334

Query: 199 ALLE 202
            LL 
Sbjct: 335 LLLS 338

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.8 bits (109), Expect = 2e-07
 Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 13/142 (9%)

Query: 98  TPLHVAAKFGHSDIVRFLVER-------------AKLTQHENEELESRVGAAWQIIRMTN 144
             L  AA+ G  D VR L+                 L         + V     + R   
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 145 KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENR 204
            + +         +    +  +  +      + +    T L+ A E     +V  L++  
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 205 TSVSHEGPNGKTALHAAAMRSY 226
             V  +    KTA   +     
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGN 145

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (85), Expect = 3e-04
 Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 81  ILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFL 115
           ++E        V+ +     T   ++   G+ D+   L
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 3e-07
 Identities = 10/49 (20%), Positives = 19/49 (38%)

Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
           N  LH+A        V+ L    P      +  G+ PL+ +   ++  +
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEI 49

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 7e-06
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 1/87 (1%)

Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
              +R+ +K     LH A    ++ ++E+L           +  G TPL+ A      + 
Sbjct: 128 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 187

Query: 197 VLALLENR-TSVSHEGPNGKTALHAAA 222
            + L+E            G  A   A 
Sbjct: 188 AVLLVEKYGAEYDLVDNKGAKAEDVAL 214

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 3e-05
 Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
              +   +K+  T L  A+   + D   +L ++        +N G     +A       +
Sbjct: 162 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQV 218

Query: 197 VLALLEN 203
               L N
Sbjct: 219 KKFFLNN 225

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 6e-05
 Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 17/64 (26%)

Query: 97  DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC 156
           + PLH A        V+ L+                      ++   +++    LH +V 
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKP-----------------SLLLQKDQDGRIPLHWSVS 43

Query: 157 HQNV 160
            Q  
Sbjct: 44  FQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 34/162 (20%), Positives = 55/162 (33%), Gaps = 19/162 (11%)

Query: 58  NTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVE 117
           N  LH               V E+L   P LLLQ +     PLH +  F   +I  FL+ 
Sbjct: 1   NYPLHQAC-----MENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 55

Query: 118 RAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSA 177
           + +    ++   +S          + N E   +L++                        
Sbjct: 56  KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP--------------DLNKI 101

Query: 178 NNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALH 219
            N G T L++A   +   +   L+EN  SV  +    +  LH
Sbjct: 102 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH 143

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 183 TPLYMAAESRSSNMVLALLENRTS-VSHEGPNGKTALHAAAMRSY 226
            PL+ A        V  LL ++ S +  +  +G+  LH +     
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 46

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.9 bits (104), Expect = 6e-07
 Identities = 17/120 (14%), Positives = 29/120 (24%), Gaps = 18/120 (15%)

Query: 97  DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC 156
           D     A K G  D V+  V + +      E     +  A    ++   E        + 
Sbjct: 3   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62

Query: 157 HQNVDVVEIL--------------TKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE 202
             +   +  L                            G T L        +  + ALL+
Sbjct: 63  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD----NQAIKALLQ 118

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.9 bits (107), Expect = 8e-07
 Identities = 39/204 (19%), Positives = 66/204 (32%), Gaps = 60/204 (29%)

Query: 79  AEILEKCPLLLLQ---VNAKDD----TPLHVAAKFGHSDIVRFLVERAKLTQHENEELES 131
           A+++     LL Q   +NA  D    T LH+AA+F  +D  + L++       ++    +
Sbjct: 2   AQVIS---DLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRT 58

Query: 132 RVGAAWQ----------------IIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPY 175
            + AA                   +     +  T L  A       +VE L   D D   
Sbjct: 59  PLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-IN 117

Query: 176 SANNYGKTPLYMAAESRSSN---------------------------------MVLALLE 202
           +A+N GKT L+ AA   ++                                     ALL+
Sbjct: 118 AADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLD 177

Query: 203 NRTSVSHEGPNGKTALHAAAMRSY 226
           N  +        +     A+ R +
Sbjct: 178 NFANREITDHMDRLPRDVASERLH 201

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 1e-04
 Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
                  + +  T L  A    + +  + L     +     ++  + P  +A+E    ++
Sbjct: 146 HANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPRDVASERLHHDI 204

Query: 197 VLALLE 202
           V  LL+
Sbjct: 205 V-RLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.8 bits (86), Expect = 5e-04
 Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 3/27 (11%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFL 115
               D     P  VA++  H DIVR L
Sbjct: 182 REITDHMDRLPRDVASERLHHDIVRLL 208

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 5e-06
 Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 29/193 (15%)

Query: 58  NTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRF 114
           ++ LH+ II +E+         E++ +    L  +N +++   TPLH+A      +I   
Sbjct: 3   DSFLHLAIIHEEKA-----LTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 57

Query: 115 LVERAK---------------------LTQHENEELESRVGAAWQIIRMTNKEKNTALHE 153
           L+                         L                 I++ TN   +T LH 
Sbjct: 58  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 117

Query: 154 AVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPN 213
           A  H  + +VE+L     D        G+T L++A + ++ ++V  LL+    V+     
Sbjct: 118 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 177

Query: 214 GKTALHAAAMRSY 226
           G +       R  
Sbjct: 178 GYSPYQLTWGRPS 190

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 1e-04
 Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 3/93 (3%)

Query: 123 QHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGK 182
                EL   +GA        N    TALH AV  QN D+V +L K   D        G 
Sbjct: 123 YLGIVELLVSLGADVNAQEPCNG--RTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGY 179

Query: 183 TPLYMAAESRSSNMVLALLENRTSVSHEGPNGK 215
           +P  +     S+ +   L +         P  +
Sbjct: 180 SPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 6/61 (9%)

Query: 58  NTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVE 117
            T LH+ +  Q  + VS                 V  +  +P  +      + I + L +
Sbjct: 146 RTALHLAVDLQNPDLVSLLLKCGADVNR------VTYQGYSPYQLTWGRPSTRIQQQLGQ 199

Query: 118 R 118
            
Sbjct: 200 L 200

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 1/85 (1%)

Query: 142 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL 201
           +  K   + L  AV + ++ +V++L +   +        G + L+ A+      +V  L+
Sbjct: 139 VDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ-MYSGSSALHSASGRGLLPLVRTLV 197

Query: 202 ENRTSVSHEGPNGKTALHAAAMRSY 226
            +    S +  +  T L  A  R  
Sbjct: 198 RSGADSSLKNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 3e-05
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 14/63 (22%)

Query: 97  DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC 156
           DTPLH+A   G+   V  LV            L  + G     + + N  + T LH AV 
Sbjct: 4   DTPLHIAVVQGNLPAVHRLV-----------NLFQQGGRE---LDIYNNLRQTPLHLAVI 49

Query: 157 HQN 159
              
Sbjct: 50  TTL 52

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 18/87 (20%)

Query: 77  FVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAA 136
            + ++L +    +        + LH A+  G   +VR LV                 GA 
Sbjct: 158 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS---------------GAD 202

Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVV 163
                + N   +T L  A   + +D++
Sbjct: 203 ---SSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 148 NTALHEAVCHQNVDVVEILTKEDPDY---PYSANNYGKTPLYMAAESRSSNM 196
           +T LH AV   N+  V  L              NN  +TPL++A  +   ++
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 55

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
              +       ++ALH A     + +V  L +   D     N +  TPL +A   R  ++
Sbjct: 167 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDI 225

Query: 197 V 197
           +
Sbjct: 226 L 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 7/33 (21%)

Query: 88  LLLQ----VNAKDD---TPLHVAAKFGHSDIVR 113
            L++     + K+    TPL VA      DI+R
Sbjct: 195 TLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 1e-04
 Identities = 14/119 (11%), Positives = 32/119 (26%), Gaps = 14/119 (11%)

Query: 98  TPLHVAAKFGHSDIVRFLVE--------------RAKLTQHENEELESRVGAAWQIIRMT 143
             L  AA  G  + VR L+E                ++    +  +   +          
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 144 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE 202
           +    T        +      ++           + +G+ P+ +A E    ++   L  
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.002
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 98  TPLHVAAKFGHSDIVRFLVERA 119
            P+ +A + GH D+ R+L   A
Sbjct: 104 LPVDLAEELGHRDVARYLRAAA 125

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 1e-04
 Identities = 7/28 (25%), Positives = 13/28 (46%)

Query: 91  QVNAKDDTPLHVAAKFGHSDIVRFLVER 118
             N K DT   +A  +G +++V  +   
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 6e-04
 Identities = 22/143 (15%), Positives = 45/143 (31%), Gaps = 14/143 (9%)

Query: 98  TPLHVAAKFGHSDIVRFLVER--------------AKLTQHENEELESRVGAAWQIIRMT 143
             L  AA  G  + +  L++                ++ +  N E+  R+        + 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 144 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN 203
           ++     +H+A     +D ++ L +   D     N         A E     +   +   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 204 RTSVSHEGPNGKTALHAAAMRSY 226
            ++V H    G TA   A +   
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGR 145

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 2e-04
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 3/29 (10%)

Query: 92  VNAKDD---TPLHVAAKFGHSDIVRFLVE 117
           ++ +D    TPL +A + G  D+V  L  
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.002
 Identities = 18/145 (12%), Positives = 34/145 (23%), Gaps = 13/145 (8%)

Query: 95  KDDTPLHVAAKFGHSDIVRFLVERAK-------------LTQHENEELESRVGAAWQIIR 141
           +    L  AA  G    VR L+ R               L           +    Q   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 142 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL 201
              ++ +         +   +  +    +     +  +         A       V++ L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 202 ENRTSVSHEGPNGKTALHAAAMRSY 226
              + +      G T L  A  R  
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGA 145

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 6e-04
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 93  NAKDDTPLHVAAKFGHSDIVRFLVE--RAKLTQHENEELE 130
           N   +TPL +A +  H      L +    +   H + E E
Sbjct: 111 NESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYE 150

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 19/122 (15%), Positives = 33/122 (27%), Gaps = 22/122 (18%)

Query: 85  CPLLLLQVNAKDDTPLHVAAKF---GHSDIVRFLVERAKLTQHENEELESRVGAAWQIIR 141
             + L   +  D+T LH+A +        IV FLV+                        
Sbjct: 34  EKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN---------------SGNLDKQT 78

Query: 142 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL 201
                           + + +              AN  G+TPL +A   +  +    L 
Sbjct: 79  GKGSTALHYCCLTDNAECLKL----LLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 134

Query: 202 EN 203
           + 
Sbjct: 135 QA 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	227
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.86
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.79

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-37  Score=228.57  Aligned_cols=199  Identities=19%  Similarity=0.217  Sum_probs=167.0

Q ss_pred             ccCCHHHHHHHhcCCchHHHhhHhhhhc---cccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCC
Q 037129           22 QQMDPIFFNAAAAGNSEPFKDMAGEEIK---SLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDT   98 (227)
Q Consensus        22 ~~~~~~l~~a~~~g~~~~v~~ll~~~~~---~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   98 (227)
                      +.+.+|||.||..|+.++|++|++.|.+   ++..+..|.||||+|  +..|+.+++++|++.    +.+++.++..|.|
T Consensus         7 ~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A--~~~g~~~iv~~Ll~~----ga~i~~~d~~g~t   80 (255)
T d1oy3d_           7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA--AILGEASTVEKLYAA----GAGVLVAERGGHT   80 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCSSCCCTTSCC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchH--Hhhcccccccccccc----cccccccccccch
Confidence            3456789999999999999999998877   346778899999999  999999999999986    7788899999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcccccchhhh--------hhHH-----HH----------------HHHHHhccCCCCc
Q 037129           99 PLHVAAKFGHSDIVRFLVERAKLTQHENEELE--------SRVG-----AA----------------WQIIRMTNKEKNT  149 (227)
Q Consensus        99 pl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--------~~~~-----~~----------------~~~~~~~~~~~~t  149 (227)
                      |||+|+..++.+++++|++.+...........        ....     ..                ...++.++..|.|
T Consensus        81 pL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~T  160 (255)
T d1oy3d_          81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (255)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             hhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcc
Confidence            99999999999999999987654332111100        0000     00                0012457788999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          150 ALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       150 ~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      |||+|+..++.+++++|++.+++.....+..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+.+|+
T Consensus       161 pLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~  237 (255)
T d1oy3d_         161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN  237 (255)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC
T ss_pred             cccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
Confidence            99999999999999999999999877778899999999999999999999999999999999999999999999876

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=208.34  Aligned_cols=176  Identities=22%  Similarity=0.220  Sum_probs=154.7

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAA  104 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~  104 (227)
                      .+|||+|+..|+.+++++++..+.+....+..+.++++.+  +..++.+++++|++.    +.+++.++..|.||||+|+
T Consensus        38 ~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Ll~~----~~d~~~~d~~g~tpL~~A~  111 (223)
T d1uoha_          38 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA--ASAGRDEIVKALLGK----GAQVNAVNQNGCTPLHYAA  111 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHH
T ss_pred             CCHHHHHHHhhhhccccccccccccccccccccccccccc--ccccccchhHHHhcc----CceeEeeCCCCCchhhHHH
Confidence            4468888888888888888887777666666778888888  888888888888774    5678889999999999999


Q ss_pred             HcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCH
Q 037129          105 KFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTP  184 (227)
Q Consensus       105 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~  184 (227)
                      ..|+.+++++|+++|..++.                  ++..|.||||+|+..++.+++++|.+.+.++ +..+..|.||
T Consensus       112 ~~~~~e~~~~Ll~~g~d~~~------------------~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i-~~~d~~g~Tp  172 (223)
T d1uoha_         112 SKNRHEIAVMLLEGGANPDA------------------KDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTP  172 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTCCCH
T ss_pred             HcCCHHHHHHHHHCCCCCCC------------------cCCCCCccchhhhhcCCcchhhhhcccccee-eeccCCCCce
Confidence            99999999999999987654                  6889999999999999999999999999985 4889999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          185 LYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       185 l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ||.|+..++.+++++|+++|++++.+|..|+||||+|. +|+
T Consensus       173 L~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~  213 (223)
T d1uoha_         173 LHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGL  213 (223)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTH
T ss_pred             eccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCC
Confidence            99999999999999999999999999999999999984 443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=6.7e-34  Score=211.73  Aligned_cols=205  Identities=20%  Similarity=0.171  Sum_probs=164.5

Q ss_pred             cchhhhccCCHHHHHHHhcCCchHHHhhHh--------hhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCc
Q 037129           16 SNREIKQQMDPIFFNAAAAGNSEPFKDMAG--------EEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPL   87 (227)
Q Consensus        16 ~~~~~~~~~~~~l~~a~~~g~~~~v~~ll~--------~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~   87 (227)
                      .+..+...+.+|||+||..|+.++|+.|+.        .|+|++.+|..|.||||+|  +..|+.+++++|++.    +.
T Consensus        25 ~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A--~~~g~~~iv~~Ll~~----Ga   98 (277)
T d2fo1e1          25 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA--VLARRRRLVAYLMKA----GA   98 (277)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TC
T ss_pred             CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccc--ccccccccccccccc----cc
Confidence            333444456788999999999999988864        5778899999999999999  999999999999986    77


Q ss_pred             ccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccc---cchhhhhh------------HHHHHHH-------------
Q 037129           88 LLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQH---ENEELESR------------VGAAWQI-------------  139 (227)
Q Consensus        88 ~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~---~~~~~~~~------------~~~~~~~-------------  139 (227)
                      +++.++..|.|||++|+..++.++++++...+.....   ........            .......             
T Consensus        99 d~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (277)
T d2fo1e1          99 DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA  178 (277)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG
T ss_pred             ccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccc
Confidence            7888999999999999999999999998776532211   11111000            0000000             


Q ss_pred             -HHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHH
Q 037129          140 -IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTAL  218 (227)
Q Consensus       140 -~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l  218 (227)
                       ....+..|.|+||+++..++.+++++++..........+..|.||||+|+..|+.+++++|+++|++++.+|.+|+|||
T Consensus       179 ~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L  258 (277)
T d2fo1e1         179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTAR  258 (277)
T ss_dssp             GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHH
T ss_pred             cccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHH
Confidence             1234457899999999999999999877654444568899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q 037129          219 HAAAMRSY  226 (227)
Q Consensus       219 ~~a~~~~~  226 (227)
                      |+|+.+||
T Consensus       259 ~~A~~~~~  266 (277)
T d2fo1e1         259 QLAQANNH  266 (277)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHcCC
Confidence            99999987

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=3.5e-34  Score=214.88  Aligned_cols=194  Identities=23%  Similarity=0.225  Sum_probs=164.1

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      ..++|+.||..|+++.|++|+++|+|++..|..|.||||+|  +..|+.+++++|++.    +......+..+.+||+.+
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A--~~~g~~eiv~~Ll~~----~~~~~~~~~~~~~~L~~a  113 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA--CIDDNVDMVKFLVEN----GANINQPDNEGWIPLHAA  113 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHH
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHH--HhcCCceeeeeeccc----cccccccccccccccccc
Confidence            34789999999999999999999999999999999999999  999999999999986    555667788899999999


Q ss_pred             HHcCCHHHHHHHHHhhhcccccchhhhhhHH---------HHHH---------------------------H------HH
Q 037129          104 AKFGHSDIVRFLVERAKLTQHENEELESRVG---------AAWQ---------------------------I------IR  141 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~---------~~~~---------------------------~------~~  141 (227)
                      +..++.+++++|+++|......+........         ....                           .      ..
T Consensus       114 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (291)
T d1s70b_         114 ASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV  193 (291)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             ccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccc
Confidence            9999999999999998665443222111110         0000                           0      01


Q ss_pred             hccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHH
Q 037129          142 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAA  221 (227)
Q Consensus       142 ~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a  221 (227)
                      ..+..|.||||.|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus       194 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di-n~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A  272 (291)
T d1s70b_         194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (291)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             cccCCCCChhhHHHHcCChhhhcccccceecc-cccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            24567899999999999999999999999985 47889999999999999999999999999999999999999999998


Q ss_pred             HHh
Q 037129          222 AMR  224 (227)
Q Consensus       222 ~~~  224 (227)
                      +++
T Consensus       273 ~e~  275 (291)
T d1s70b_         273 DED  275 (291)
T ss_dssp             CSG
T ss_pred             HHH
Confidence            753

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=208.81  Aligned_cols=185  Identities=18%  Similarity=0.167  Sum_probs=161.4

Q ss_pred             CCHHHHHHHhcCCchHHHhhHh----hhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAG----EEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTP   99 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~----~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tp   99 (227)
                      +.+|||+|+..|+.+.+..+++    .+.+++..|..|.||||+|  +..++.+++++|++.    +.+++.++..|.||
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A--~~~~~~~iv~~L~~~----g~d~~~~d~~g~t~   75 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA--VITNQPEIAEALLGA----GCDPELRDFRGNTP   75 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHH--HHTTCHHHHHCCCSC----CCCSCCCCTTCCCH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccc--ccccccccccccccc----cccccccccccccc
Confidence            5678999999999876666554    6888889999999999999  999999999998875    77888899999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCccccc
Q 037129          100 LHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANN  179 (227)
Q Consensus       100 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~  179 (227)
                      |++++..++.++++.|++.+........            .......+.||||.|+..++.+++++++..++......+.
T Consensus        76 l~~~~~~~~~~~~~~l~~~~~~~~~~~~------------~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~  143 (221)
T d1iknd_          76 LHLACEQGCLASVGVLTQSCTTPHLHSI------------LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC  143 (221)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCG------------GGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT
T ss_pred             cccccccccccccchhhhhccccccccc------------ccccccccchhhhHHhhcCChhheeeecccCccccccccc
Confidence            9999999999999999998766443211            1224566899999999999999999999999997767778


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          180 YGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       180 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      .|.||||+|++.|+.+++++|+++|+|++.+|.+|.||||+|+.+++
T Consensus       144 ~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~  190 (221)
T d1iknd_         144 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS  190 (221)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSC
T ss_pred             CCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCC
Confidence            89999999999999999999999999999999999999999998775

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-32  Score=195.58  Aligned_cols=177  Identities=21%  Similarity=0.282  Sum_probs=161.3

Q ss_pred             CHHHHHHHhcCCchHHHhhHh-hhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           25 DPIFFNAAAAGNSEPFKDMAG-EEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~-~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      +.+|+.+|..|+++.|+.++. .+.+++.+|..|+||||+|  +..|+.+++++++..    +......+..+.++++.+
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~A--a~~g~~e~~~~l~~~----~~~~~~~~~~~~~~~~~~   77 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWA--CSAGHTEIVEFLLQL----GVPVNDKDDAGWSPLHIA   77 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH--HHHTCHHHHHHHHHH----TCCSCCCCTTCCCHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHH--HHhhhhccccccccc----cccccccccccccccccc
Confidence            467899999999999998887 5667779999999999999  999999999999987    444555677889999999


Q ss_pred             HHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCC
Q 037129          104 AKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKT  183 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t  183 (227)
                      +..++.+++++|+++|...+.                  .+..|.||||+|+..++.+++++|++.|.++ +..+..|.|
T Consensus        78 ~~~~~~~i~~~Ll~~~~d~~~------------------~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t  138 (223)
T d1uoha_          78 ASAGRDEIVKALLGKGAQVNA------------------VNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEAT  138 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTC------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred             ccccccchhHHHhccCceeEe------------------eCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCc
Confidence            999999999999999987554                  7899999999999999999999999999985 478899999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          184 PLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       184 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      |||+|+..++.+++++|++.|.+++.+|..|.||||+|+.+|+
T Consensus       139 ~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~  181 (223)
T d1uoha_         139 AMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER  181 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTC
T ss_pred             cchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCc
Confidence            9999999999999999999999999999999999999999886

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-33  Score=202.01  Aligned_cols=197  Identities=17%  Similarity=0.163  Sum_probs=158.2

Q ss_pred             CHHHHHHHhcCCchHHHhhHhh-hhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGE-EIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      ++|||+||..|+.+.|+.|++. +.+++.+|.+|.||||+|  +..|+.+++++|++.+.. ....+..+..|.+|+|++
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A--~~~g~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~~~~   77 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS--VSFQAHEITSFLLSKMEN-VNLDDYPDDSGWTPFHIA   77 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHH--HHTTCHHHHHHHHTTCTT-CCGGGCCCTTSCCHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHH--HHcCCccccchhhhhhcc-cccccccccccccccccc
Confidence            4689999999999999999984 567778899999999999  999999999999986321 111235677889999999


Q ss_pred             HHcCCHHHHHHHHHhhhcccccchh--hhhhHH---------HHHHH------HHhccCCCCcHHHHHHhcCCHHHHHHH
Q 037129          104 AKFGHSDIVRFLVERAKLTQHENEE--LESRVG---------AAWQI------IRMTNKEKNTALHEAVCHQNVDVVEIL  166 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~~~~~~~~~~--~~~~~~---------~~~~~------~~~~~~~~~t~l~~A~~~~~~~~~~~l  166 (227)
                      +..+..++++.++..+........+  ......         ....+      ....+..|+||||+|+..|+.+++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  157 (229)
T d1ixva_          78 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL  157 (229)
T ss_dssp             HHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccc
Confidence            9999999999988887654432221  111111         11111      123567899999999999999999999


Q ss_pred             HhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHh-cCCCCcccCCCCCCHHHHHHHh
Q 037129          167 TKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE-NRTSVSHEGPNGKTALHAAAMR  224 (227)
Q Consensus       167 l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~a~~~  224 (227)
                      ++.++...+.++..|.||||+|+..++.+++++|++ .|++++.+|..|.||||+|+..
T Consensus       158 l~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         158 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH
T ss_pred             cccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH
Confidence            999876667889999999999999999999999997 5999999999999999998754

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.2e-31  Score=197.26  Aligned_cols=163  Identities=23%  Similarity=0.219  Sum_probs=143.4

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHh-------------------
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEK-------------------   84 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~-------------------   84 (227)
                      +.+|||+|+..|+.++|++|++.|++++..|..|.||||+|  +..++.++++++++....                   
T Consensus        45 g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A--~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  122 (255)
T d1oy3d_          45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA--CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD  122 (255)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHH--TTTTCHHHHHHHSSSCCSSCCCC--------------
T ss_pred             CCCccchHHhhcccccccccccccccccccccccchhhhhh--hccCchHHHHHHHhhccchhcccchhhhhHHhhhccc
Confidence            45679999999999999999999999999999999999999  999999999887542100                   


Q ss_pred             ------------------------CCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHH
Q 037129           85 ------------------------CPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQII  140 (227)
Q Consensus        85 ------------------------~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  140 (227)
                                              .+..++.++..|.||||+|+..++.+++++|++.+.....                
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~----------------  186 (255)
T d1oy3d_         123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK----------------  186 (255)
T ss_dssp             ---------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC----------------
T ss_pred             chHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccc----------------
Confidence                                    0233456778899999999999999999999999887653                


Q ss_pred             HhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCC
Q 037129          141 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTS  206 (227)
Q Consensus       141 ~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  206 (227)
                       ..+..|.||||+|+..++.+++++|+++|+++ +.++..|.||||+|+..++.+++++|+++|++
T Consensus       187 -~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadi-n~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         187 -PEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             -CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             -cccccccccccccccccHHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence             24678999999999999999999999999995 47899999999999999999999999999996

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.9e-31  Score=178.58  Aligned_cols=154  Identities=19%  Similarity=0.120  Sum_probs=142.9

Q ss_pred             HHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHH
Q 037129           26 PIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAK  105 (227)
Q Consensus        26 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~  105 (227)
                      ++||.||..|+.++|+.|+++|+|++..|..|.||||+|  + .++.+++++|++.    +.+++..+..+.++++.++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A--~-~~~~ei~~~Ll~~----~a~~~~~~~~~~~~l~~~~~   75 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM--K-LGNPEIARRLLLR----GANPDLKDRTGFAVIHDAAR   75 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHC--C-SSCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCccccccccc--c-ccccccccccccc----ccccccccccCccccccccc
Confidence            579999999999999999999999999999999999988  6 6899999999875    67788899999999999999


Q ss_pred             cCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHH
Q 037129          106 FGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPL  185 (227)
Q Consensus       106 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l  185 (227)
                      .++.+.+++|+..+...+.                  .+..+.+++++|+..++.+++++|+++++.....++..|.|||
T Consensus        76 ~~~~~~~~~l~~~~~~~~~------------------~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL  137 (156)
T d1ihba_          76 AGFLDTLQTLLEFQADVNI------------------EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC  137 (156)
T ss_dssp             HTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred             ccccccccccccccccccc------------------cccccccccccccccccccccccccccccccccccCCCCCCHH
Confidence            9999999999999887654                  6889999999999999999999999999866678899999999


Q ss_pred             HHHHHcCcHHHHHHHHhcC
Q 037129          186 YMAAESRSSNMVLALLENR  204 (227)
Q Consensus       186 ~~A~~~~~~~~v~~Ll~~g  204 (227)
                      |+|+..++.+++++|+++|
T Consensus       138 ~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         138 DLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHcCCHHHHHHHHhcC
Confidence            9999999999999999987

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.4e-31  Score=189.41  Aligned_cols=197  Identities=15%  Similarity=0.149  Sum_probs=162.7

Q ss_pred             cCCHHHHHHHhcCCchHHHhhHh----hhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCC
Q 037129           23 QMDPIFFNAAAAGNSEPFKDMAG----EEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDT   98 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~ll~----~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   98 (227)
                      .+.+|||.||..|+.++|+.|++    .|.+++..|..|.||||+|  +..|+.+++++|++.    +...+.....+.+
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A--~~~~~~~iv~~Ll~~----ga~~~~~~~~~~~   75 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA--VITTLPSVVRLLVTA----GASPMALDRHGQT   75 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceeh--hcccccccccccccc----ccccccccccccc
Confidence            46778999999999999999986    6788889999999999999  999999999999986    6677788889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcccccch----hhhhhH---------HHHHHHH-------HhccCCCCcHHHHHHhcC
Q 037129           99 PLHVAAKFGHSDIVRFLVERAKLTQHENE----ELESRV---------GAAWQII-------RMTNKEKNTALHEAVCHQ  158 (227)
Q Consensus        99 pl~~A~~~~~~~~v~~Ll~~~~~~~~~~~----~~~~~~---------~~~~~~~-------~~~~~~~~t~l~~A~~~~  158 (227)
                      +++.|...++.++++.+............    ......         .....+.       ......+.++++.|+..+
T Consensus        76 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~  155 (228)
T d1k1aa_          76 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN  155 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             ccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhh
Confidence            99999999999999988876543322111    000000         0111111       123456889999999999


Q ss_pred             CHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          159 NVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       159 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ...+++.+++.+... ...+..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+.+|+
T Consensus       156 ~~~~~~~~~~~~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~  222 (228)
T d1k1aa_         156 SLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV  222 (228)
T ss_dssp             CHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHH
T ss_pred             hhhhhhhhhhhcccc-ccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCC
Confidence            999999999999884 4788999999999999999999999999999999999999999999998875

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.3e-30  Score=198.88  Aligned_cols=193  Identities=24%  Similarity=0.264  Sum_probs=163.4

Q ss_pred             HHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHH
Q 037129           26 PIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAK  105 (227)
Q Consensus        26 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~  105 (227)
                      ||||.||..|+.++|++|++.|.+++..|..|+||||+|  +..|+.+++++|++.    +.+++.++..|+||||+|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A--~~~g~~~iv~~Ll~~----gadi~~~~~~g~t~L~~A~~   75 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA--ARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCAAR   75 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHH--HHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHC----cCCCCCCCCCCCCHHHHHHH
Confidence            579999999999999999999999999999999999999  999999999999997    77889999999999999999


Q ss_pred             cCCHHHHHHHHHhhhcccccchhhhhhHHHHH--------H-------HHHhccCCCCcHHHHHHhcCCHHHHHHHHhcC
Q 037129          106 FGHSDIVRFLVERAKLTQHENEELESRVGAAW--------Q-------IIRMTNKEKNTALHEAVCHQNVDVVEILTKED  170 (227)
Q Consensus       106 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~--------~-------~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~  170 (227)
                      .|+.+++++|+..+..................        .       .....+..+.++++.|+..++.+++++|++.+
T Consensus        76 ~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~  155 (408)
T d1n11a_          76 IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD  155 (408)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999999987655443222211111110        0       01234567889999999999999999999999


Q ss_pred             CCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhc
Q 037129          171 PDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRS  225 (227)
Q Consensus       171 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  225 (227)
                      .++ +..+..|.+||+.|+..++.+++++|+.+|++++..+..|.||++.+....
T Consensus       156 ~~~-~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~  209 (408)
T d1n11a_         156 AHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN  209 (408)
T ss_dssp             CCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTT
T ss_pred             CCC-CcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccc
Confidence            884 477888999999999999999999999999999999999999999887654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.8e-29  Score=195.35  Aligned_cols=195  Identities=23%  Similarity=0.224  Sum_probs=130.6

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAA  104 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~  104 (227)
                      .++|+.|+..|+.+++++|++.|.+++..+..|.||+|.+  ......+....++..    .......+..+.|||+.|+
T Consensus       166 ~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~--~~~~~~~~~~~l~~~----~~~~~~~~~~~~t~l~~a~  239 (408)
T d1n11a_         166 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA--AKQNQVEVARSLLQY----GGSANAESVQGVTPLHLAA  239 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhh--hccchhhhhhhhhhc----cccccccCCCCCCHHHHHH
Confidence            3457777777777777777777776666666666666666  555554444444332    1122223334444444444


Q ss_pred             HcCCHHHHHHHHHhhhcccccchhhhhhHHH---------HHHH------HHhccCCCCcHHHHHHhcCCHHHHHHHHhc
Q 037129          105 KFGHSDIVRFLVERAKLTQHENEELESRVGA---------AWQI------IRMTNKEKNTALHEAVCHQNVDVVEILTKE  169 (227)
Q Consensus       105 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~---------~~~~------~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~  169 (227)
                      ..+..+++++++..+......+.....++..         ...+      .+..+..+.|||+.++..++.++++++++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~  319 (408)
T d1n11a_         240 QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH  319 (408)
T ss_dssp             HTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT
T ss_pred             HhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccc
Confidence            4444444444444443332222111111100         0000      122566788999999999999999999999


Q ss_pred             CCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          170 DPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       170 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      |.++. .++..|.||||+|++.|+.+++++|+++|++++.+|.+|+||||+|+.+||
T Consensus       320 g~~in-~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~  375 (408)
T d1n11a_         320 QADVN-AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY  375 (408)
T ss_dssp             TCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC
T ss_pred             ccccc-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            99854 788999999999999999999999999999999999999999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.4e-29  Score=169.52  Aligned_cols=150  Identities=19%  Similarity=0.201  Sum_probs=135.2

Q ss_pred             HHHHHHhcCCchHHHhhHhh-hhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHH
Q 037129           27 IFFNAAAAGNSEPFKDMAGE-EIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAK  105 (227)
Q Consensus        27 ~l~~a~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~  105 (227)
                      .|+.||..|+++.|++|++. +.+++..|..|.||||+|  +. ++.+++++|++.    +.+++..+..|.+|++.++.
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A--~~-~~~~~v~~Ll~~----~~~~~~~~~~~~~~l~~~~~   77 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM--MF-GSTAIALELLKQ----GASPNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHS--CT-TCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccc--cc-cccccccccccc----cccccccccccccccccccc
Confidence            49999999999999999984 778889999999999998  75 778889988875    66788889999999999999


Q ss_pred             cCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHH
Q 037129          106 FGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPL  185 (227)
Q Consensus       106 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l  185 (227)
                      .++.+++++++++|...+.                  ++..|.||||+|+..|+.+++++|+ .|+++ +.++..|+|||
T Consensus        78 ~~~~~~~~~~l~~~~~~n~------------------~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~-~~~d~~G~TpL  137 (156)
T d1bd8a_          78 TGFLDTLKVLVEHGADVNV------------------PDGTGALPIHLAVQEGHTAVVSFLA-AESDL-HRRDARGLTPL  137 (156)
T ss_dssp             TTCHHHHHHHHHTTCCSCC------------------CCTTSCCHHHHHHHHTCHHHHHHHH-TTSCT-TCCCTTSCCHH
T ss_pred             ccccccccccccccccccc------------------ccCCCCeeecccccccccccccccc-ccccc-cccCCCCCCHH
Confidence            9999999999999987654                  6889999999999999999999887 57774 47899999999


Q ss_pred             HHHHHcCcHHHHHHHHhc
Q 037129          186 YMAAESRSSNMVLALLEN  203 (227)
Q Consensus       186 ~~A~~~~~~~~v~~Ll~~  203 (227)
                      |+|+..|+.+++++|+++
T Consensus       138 ~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         138 ELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHhh
Confidence            999999999999999975

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.1e-28  Score=180.37  Aligned_cols=196  Identities=20%  Similarity=0.191  Sum_probs=146.6

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhhccccc-cCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEIKSLLT-AKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVA  103 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~-~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A  103 (227)
                      +++|+.|+..|++++|++|++.|.+++.+ +..|.||||+|  +..|+.+++++|++.    +......+..+.+|.+.+
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A--~~~~~~eiv~~L~~~----~~~~~~~~~~~~~~~~~~   79 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLRH----GADPVLRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHH--HHcCCHHHhhhhccc----cccccccccccchhhHHH
Confidence            46899999999999999999999999854 45799999999  999999999999886    344445555666666666


Q ss_pred             HHcCCHHHHHHHHHhhhcccccchhhhhhHHHH-------------------------HHHHHhccCCCCcHHHHHHhcC
Q 037129          104 AKFGHSDIVRFLVERAKLTQHENEELESRVGAA-------------------------WQIIRMTNKEKNTALHEAVCHQ  158 (227)
Q Consensus       104 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~t~l~~A~~~~  158 (227)
                      +..+..+...++++...................                         ..........|.||||+|+..|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  159 (285)
T d1wdya_          80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  159 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred             hhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcC
Confidence            666666666666665443332221111111000                         0112345567899999999999


Q ss_pred             CHHHHHHHHhc-CCCC------------------------------------CcccccCCCCHHHHHHHcCcHHHHHHHH
Q 037129          159 NVDVVEILTKE-DPDY------------------------------------PYSANNYGKTPLYMAAESRSSNMVLALL  201 (227)
Q Consensus       159 ~~~~~~~ll~~-~~~~------------------------------------~~~~~~~~~t~l~~A~~~~~~~~v~~Ll  201 (227)
                      +.+++++|++. |.++                                    .+.++..|.||||.|+..++.+++++|+
T Consensus       160 ~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL  239 (285)
T d1wdya_         160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL  239 (285)
T ss_dssp             CHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHH
Confidence            98888888753 2221                                    1245678999999999999999999999


Q ss_pred             h-cCCCCcccCCCCCCHHHHHHHhcC
Q 037129          202 E-NRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       202 ~-~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      + .|++++.+|.+|.||||+|+.+|+
T Consensus       240 ~~~g~din~~d~~G~TpL~~A~~~~~  265 (285)
T d1wdya_         240 EQEHIEINDTDSDGKTALLLAVELKL  265 (285)
T ss_dssp             HSSSCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence            7 599999999999999999999987

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=3.4e-28  Score=173.52  Aligned_cols=177  Identities=20%  Similarity=0.169  Sum_probs=120.4

Q ss_pred             HHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHH
Q 037129           26 PIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAK  105 (227)
Q Consensus        26 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~  105 (227)
                      +|||+||..|+.+++++|++.|.+++..+..+.++++.+  +..++..........   ...........+.++.+.+..
T Consensus        25 t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   99 (209)
T d1ot8a_          25 TSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA--VAADAMGVFQILLRN---RATNLNARMHDGTTPLILAAR   99 (209)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHTC---TTCCTTCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhhcccccccccccccccccc--ccccccccccccccc---ccccccccccccccccccccc
Confidence            345555555555555555555555444444555555555  444443333322221   011111222334445555555


Q ss_pred             cCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHH
Q 037129          106 FGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPL  185 (227)
Q Consensus       106 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l  185 (227)
                      .......+.|...+...+                  .++..|.|+|++++..+..++++.+++.+.++. ..+..|.|||
T Consensus       100 ~~~~~~~~~L~~~~~~~~------------------~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~-~~d~~g~TpL  160 (209)
T d1ot8a_         100 LAIEGMVEDLITADADIN------------------AADNSGKTALHWAAAVNNTEAVNILLMHHANRD-AQDDKDETPL  160 (209)
T ss_dssp             TTCTTHHHHHHHTTCCTT------------------CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHH
T ss_pred             ccchhhhhhhhhhccccc------------------ccCCCCCCcchhhcccCcceeeeeecccccccc-cccccccccc
Confidence            555555555555544432                  367889999999999999999999999998854 7889999999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          186 YMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       186 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+++|+
T Consensus       161 ~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         161 FLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             chhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCC
Confidence            99999999999999999999999999999999999999987

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=6.1e-28  Score=164.02  Aligned_cols=150  Identities=25%  Similarity=0.290  Sum_probs=113.0

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAA  104 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~  104 (227)
                      .+||+.|++.|+.++|+.|++.|.+++ .+..|.||||+|  +..++.+.++.+...    +......+..+.++++.++
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   75 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLA--AQYGHFSTTEVLLRA----GVSRDARTKVDRTPLHMAA   75 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHH--HHHTCHHHHHHHHTT----TCCTTCCCTTCCCHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccc--ccccccccccccccc----ccccccccccccccccccc
Confidence            367888888888888888888877755 566788888888  888887777766654    3333445556677888888


Q ss_pred             HcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCH
Q 037129          105 KFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTP  184 (227)
Q Consensus       105 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~  184 (227)
                      ...+.+++++++.++.....                  ++..|.||||+|+..|+.+++++|++.|+++. ..+..|.||
T Consensus        76 ~~~~~~~~~~l~~~~~~~~~------------------~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~-~~d~~g~Tp  136 (153)
T d1awcb_          76 SEGHANIVEVLLKHGADVNA------------------KDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTA  136 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCH
T ss_pred             ccccceeeecccccCCcccc------------------ccccCchHHHhhhhcchhheeeeccccccCCc-ccCCCCCCH
Confidence            88888888888877766543                  67778888888888888888888888887744 677788888


Q ss_pred             HHHHHHcCcHHHHHHH
Q 037129          185 LYMAAESRSSNMVLAL  200 (227)
Q Consensus       185 l~~A~~~~~~~~v~~L  200 (227)
                      ||+|+..|+.+++++|
T Consensus       137 l~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         137 FDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHhC
Confidence            8888888888888765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.8e-27  Score=161.74  Aligned_cols=143  Identities=20%  Similarity=0.242  Sum_probs=130.1

Q ss_pred             CchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHH
Q 037129           58 NTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAW  137 (227)
Q Consensus        58 ~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  137 (227)
                      .|||+.|  ++.|+.+++++|++.    +.+++ .+..|+||||+|+..++.++++.++........             
T Consensus         3 ~t~L~~A--a~~g~~~~v~~LL~~----ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~-------------   62 (153)
T d1awcb_           3 GKKLLEA--ARAGQDDEVRILMAN----GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA-------------   62 (153)
T ss_dssp             HHHHHHH--HHHTCHHHHHHHHHH----TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-------------
T ss_pred             CHHHHHH--HHCCCHHHHHHHHHc----CCCcc-cccCCCccccccccccccccccccccccccccc-------------
Confidence            4999999  999999999999997    44444 588999999999999999999999988776543             


Q ss_pred             HHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCH
Q 037129          138 QIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA  217 (227)
Q Consensus       138 ~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  217 (227)
                           ....+.++++.++...+.+++++++..+.+.. .++..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        63 -----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tp  136 (153)
T d1awcb_          63 -----RTKVDRTPLHMAASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA  136 (153)
T ss_dssp             -----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             -----cccccccccccccccccceeeecccccCCccc-cccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCH
Confidence                 46777889999999999999999999999854 789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q 037129          218 LHAAAMRSY  226 (227)
Q Consensus       218 l~~a~~~~~  226 (227)
                      ||+|+.+|+
T Consensus       137 l~~A~~~g~  145 (153)
T d1awcb_         137 FDISIDNGN  145 (153)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHcCC
Confidence            999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.3e-27  Score=159.88  Aligned_cols=142  Identities=17%  Similarity=0.205  Sum_probs=128.7

Q ss_pred             chhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHH
Q 037129           59 TILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQ  138 (227)
Q Consensus        59 t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  138 (227)
                      +.|+.|  +..|+.++|+.|++.   .+.+++.+|..|+||||+|+ +++.+++++|++++...+.              
T Consensus         4 ~~L~~A--a~~g~~~~vk~lL~~---~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~--------------   63 (156)
T d1bd8a_           4 DRLSGA--AARGDVQEVRRLLHR---ELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV--------------   63 (156)
T ss_dssp             HHHHHH--HHHTCHHHHHHHHHT---TCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTC--------------
T ss_pred             HHHHHH--HHcCCHHHHHHHHHh---CCCCCCccCCCCCccccccc-ccccccccccccccccccc--------------
Confidence            569999  999999999999873   46778899999999999886 5889999999999887654              


Q ss_pred             HHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHH
Q 037129          139 IIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTAL  218 (227)
Q Consensus       139 ~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l  218 (227)
                          .+..+.+|++.++..++.++++++++.++++. .++..|.||||+|+..|+.+++++|+ .|++++.+|..|.|||
T Consensus        64 ----~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n-~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL  137 (156)
T d1bd8a_          64 ----QDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPL  137 (156)
T ss_dssp             ----CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHH
T ss_pred             ----cccccccccccccccccccccccccccccccc-cccCCCCeeecccccccccccccccc-ccccccccCCCCCCHH
Confidence                67889999999999999999999999999854 78889999999999999999999887 6899999999999999


Q ss_pred             HHHHHhcC
Q 037129          219 HAAAMRSY  226 (227)
Q Consensus       219 ~~a~~~~~  226 (227)
                      |+|+.+|+
T Consensus       138 ~~A~~~g~  145 (156)
T d1bd8a_         138 ELALQRGA  145 (156)
T ss_dssp             HHHHHSCC
T ss_pred             HHHHHcCC
Confidence            99999886

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=7.9e-30  Score=195.33  Aligned_cols=184  Identities=15%  Similarity=0.099  Sum_probs=141.3

Q ss_pred             cCCHHHHHHHhcCCchHHHh---hHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCccccccc--CCCC
Q 037129           23 QMDPIFFNAAAAGNSEPFKD---MAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVN--AKDD   97 (227)
Q Consensus        23 ~~~~~l~~a~~~g~~~~v~~---ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~g~   97 (227)
                      .+.++|+.|+.+|+.+++++   |++.|.+++..+..|.||||+|  +..|+.+++++|++.    +.+++..+  ..|+
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~A--a~~G~~~~v~~Ll~~----g~~~~~~~~~~~g~  162 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA--AENGHLHVLNRLCEL----APTEIMAMIQAENY  162 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH--HHTTCHHHHHHHHHS----CTTTHHHHHSHHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHH--HHCCCHHHHHHHHHc----CCCccccccccCCC
Confidence            44678999999999876654   7889999999999999999999  999999999999986    55566554  4589


Q ss_pred             CHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCc--
Q 037129           98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPY--  175 (227)
Q Consensus        98 tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~--  175 (227)
                      ||||+|+..|+.+++++|++.|.....               .+..+.++.||++.|+.+|+.+++++|++.|++...  
T Consensus       163 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~---------------~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~  227 (346)
T d2ajaa1         163 HAFRLAAENGHLHVLNRLCELAPTEAT---------------AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE  227 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGGHH---------------HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHH
T ss_pred             ChhHHHHHHhhHHHHHHHHHcCCcccc---------------cccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHH
Confidence            999999999999999999999876432               122344567788889999999999999987532110  


Q ss_pred             ------------------------------cccc----------------CCCCHHHHHHHcCcHHHHHHHHhcCCC---
Q 037129          176 ------------------------------SANN----------------YGKTPLYMAAESRSSNMVLALLENRTS---  206 (227)
Q Consensus       176 ------------------------------~~~~----------------~~~t~l~~A~~~~~~~~v~~Ll~~g~~---  206 (227)
                                                    ....                .+.++++.|+..+..+++++|++.+..   
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~  307 (346)
T d2ajaa1         228 IHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKAL  307 (346)
T ss_dssp             HCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGG
T ss_pred             HHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhh
Confidence                                          0000                123577788888999999999988754   


Q ss_pred             --CcccCCCCCCHHHHHHHhcCC
Q 037129          207 --VSHEGPNGKTALHAAAMRSYA  227 (227)
Q Consensus       207 --~~~~~~~g~t~l~~a~~~~~~  227 (227)
                        ....+.+|+||||+|+++||.
T Consensus       308 ~~~~~~~~~g~T~LhlA~~~Gn~  330 (346)
T d2ajaa1         308 APTATIPGDANELLRLALRLGNQ  330 (346)
T ss_dssp             SSCCSSTTCCCHHHHHHHHHTCT
T ss_pred             cccccCCCCCCcHHHHHHHcCcH
Confidence              334456789999999999983

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.1e-27  Score=159.94  Aligned_cols=142  Identities=20%  Similarity=0.227  Sum_probs=131.3

Q ss_pred             chhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHH
Q 037129           59 TILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQ  138 (227)
Q Consensus        59 t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  138 (227)
                      ++||+|  +..|+.+++++|++.    +.+++.+|..|.||||+|+ .++.+++++|+++|+....              
T Consensus         3 ~~Lh~A--a~~g~~~~v~~Ll~~----g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~--------------   61 (156)
T d1ihba_           3 NELASA--AARGDLEQLTSLLQN----NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDL--------------   61 (156)
T ss_dssp             HHHHHH--HHHTCHHHHHHHTTS----CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTC--------------
T ss_pred             HHHHHH--HHcCCHHHHHHHHHC----CCCcCccCCcccccccccc-ccccccccccccccccccc--------------
Confidence            899999  999999999999985    7889999999999999886 7899999999999988654              


Q ss_pred             HHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCC-CCcccCCCCCCH
Q 037129          139 IIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRT-SVSHEGPNGKTA  217 (227)
Q Consensus       139 ~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~  217 (227)
                          .+..+.++++.++..+..+.++.+++.+.+. +..+..|.+|++.|+..++.+++++|+++|. +++.+|..|.||
T Consensus        62 ----~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~Tp  136 (156)
T d1ihba_          62 ----KDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA  136 (156)
T ss_dssp             ----CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCH
T ss_pred             ----ccccCcccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCH
Confidence                6888999999999999999999999998884 4778899999999999999999999999885 899999999999


Q ss_pred             HHHHHHhcC
Q 037129          218 LHAAAMRSY  226 (227)
Q Consensus       218 l~~a~~~~~  226 (227)
                      ||+|+.+|+
T Consensus       137 L~~A~~~~~  145 (156)
T d1ihba_         137 CDLARLYGR  145 (156)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHcCC
Confidence            999999886

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=4.5e-27  Score=174.51  Aligned_cols=179  Identities=18%  Similarity=0.205  Sum_probs=143.0

Q ss_pred             HHHHHHh-cCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHH----HhCCcccccccCCCCCHHH
Q 037129           27 IFFNAAA-AGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEIL----EKCPLLLLQVNAKDDTPLH  101 (227)
Q Consensus        27 ~l~~a~~-~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~g~tpl~  101 (227)
                      ||+.++. .|..++++.|.+.+++.... ..|.||||+|  +..|+.++++.|+...    ...|.++|.+|..|+||||
T Consensus         3 p~~~~~~~~~~~~~~~~l~~~~~n~~~~-~~g~T~Lh~A--~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh   79 (277)
T d2fo1e1           3 PIKLHTEAAGSYAITEPITRESVNIIDP-RHNRTVLHWI--ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM   79 (277)
T ss_dssp             CCHHHHHHHSSSCCCSCCSTTTTTTCCC-SSCCCHHHHH--HCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHH
T ss_pred             hHHHHHHhCCCHHHHHHHHhcCCCcCCC-CCCccHHHHH--HHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeec
Confidence            4553333 46677777777788884332 3699999999  9999999999997653    3457889999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcC-----------
Q 037129          102 VAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKED-----------  170 (227)
Q Consensus       102 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~-----------  170 (227)
                      +|+..|+.+++++|+++|++++.                  ++..|.|++++|+..++.++++++...+           
T Consensus        80 ~A~~~g~~~iv~~Ll~~Gad~n~------------------~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~  141 (277)
T d2fo1e1          80 LAVLARRRRLVAYLMKAGADPTI------------------YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR  141 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCC------------------CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred             ccccccccccccccccccccccc------------------ccccccccccchhhhcchhhhhhhhhccccccccccccc
Confidence            99999999999999999998765                  5677888888888888877777765441           


Q ss_pred             ----------------------------CC-------CCcccccCCCCHHHHHHHcCcHHHHHHHH-hcCCCCcccCCCC
Q 037129          171 ----------------------------PD-------YPYSANNYGKTPLYMAAESRSSNMVLALL-ENRTSVSHEGPNG  214 (227)
Q Consensus       171 ----------------------------~~-------~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g  214 (227)
                                                  ..       .....+..|.||||.++..++.+++++++ ..+.+++.+|..|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g  221 (277)
T d2fo1e1         142 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG  221 (277)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred             ccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCC
Confidence                                        00       01233456899999999999999998765 5789999999999


Q ss_pred             CCHHHHHHHhcC
Q 037129          215 KTALHAAAMRSY  226 (227)
Q Consensus       215 ~t~l~~a~~~~~  226 (227)
                      .||||+|+.+|+
T Consensus       222 ~tpL~~A~~~g~  233 (277)
T d2fo1e1         222 KTPIMLAAQEGR  233 (277)
T ss_dssp             CCHHHHHHHHTC
T ss_pred             CCHHHHHHHcCC
Confidence            999999999886

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.4e-26  Score=166.63  Aligned_cols=169  Identities=22%  Similarity=0.169  Sum_probs=145.1

Q ss_pred             chhhhccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhC--CcccccccC
Q 037129           17 NREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKC--PLLLLQVNA   94 (227)
Q Consensus        17 ~~~~~~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~   94 (227)
                      +..+. .+.+|||+|+..|+.+++++|++.|++++..+..|.|||+.+  +..++.++++.+++.....  .........
T Consensus        33 n~~d~-~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  109 (221)
T d1iknd_          33 NFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA--CEQGCLASVGVLTQSCTTPHLHSILKATNY  109 (221)
T ss_dssp             CCCCT-TCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH--HHHTCHHHHHHHHHSTTTTSSSCGGGCCCT
T ss_pred             ccCCC-CCCccccccccccccccccccccccccccccccccccccccc--cccccccccchhhhhccccccccccccccc
Confidence            33444 455679999999999999999999999999999999999999  9999999999998853321  122334455


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCC
Q 037129           95 KDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYP  174 (227)
Q Consensus        95 ~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~  174 (227)
                      .|.||||.|+..++.+++++|+..|...+..                 .+..|.||||+|+..|+.+++++|++.|++ .
T Consensus       110 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~-----------------~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad-~  171 (221)
T d1iknd_         110 NGHTCLHLASIHGYLGIVELLVSLGADVNAQ-----------------EPCNGRTALHLAVDLQNPDLVSLLLKCGAD-V  171 (221)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-----------------CTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-S
T ss_pred             ccchhhhHHhhcCChhheeeecccCcccccc-----------------cccCCCCccccccccccHHHHHHHHhcCCc-c
Confidence            6899999999999999999999999876541                 356799999999999999999999999999 4


Q ss_pred             cccccCCCCHHHHHHHcCcHHHHHHHHhcCCC
Q 037129          175 YSANNYGKTPLYMAAESRSSNMVLALLENRTS  206 (227)
Q Consensus       175 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  206 (227)
                      +.++..|.||||+|+..++.+++++|++.+.+
T Consensus       172 ~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         172 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            58899999999999999999999999998755

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.1e-26  Score=164.86  Aligned_cols=163  Identities=22%  Similarity=0.242  Sum_probs=134.4

Q ss_pred             CchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchh---hhhhHH
Q 037129           58 NTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEE---LESRVG  134 (227)
Q Consensus        58 ~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~---~~~~~~  134 (227)
                      ++|||+|  +..|+.++++.|++.   .+..++.+|..|+||||+|+..|+.+++++|+++|+.++.....   ...+..
T Consensus         1 n~pLh~A--~~~g~~~~v~~Ll~~---~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~   75 (229)
T d1ixva_           1 NYPLHQA--CMENEFFKVQELLHS---KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH   75 (229)
T ss_dssp             CCHHHHH--HHHTCHHHHHHHHHH---CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHH
T ss_pred             CHhHHHH--HHcCCHHHHHHHHHc---CCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccc
Confidence            5899999  999999999988874   46678899999999999999999999999999999876533221   111111


Q ss_pred             HH---------HHH--------HHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHH
Q 037129          135 AA---------WQI--------IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMV  197 (227)
Q Consensus       135 ~~---------~~~--------~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v  197 (227)
                      ..         ...        ....+..+.++++.++..++.+++++|+..+... ...+..|.||||.|+..++.+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~  154 (229)
T d1ixva_          76 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLI  154 (229)
T ss_dssp             HHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhccccccc
Confidence            11         011        1224456789999999999999999999999884 47888999999999999999999


Q ss_pred             HHHHhcC-CCCcccCCCCCCHHHHHHHhcC
Q 037129          198 LALLENR-TSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       198 ~~Ll~~g-~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ++|++.| .+++.+|.+|.||||+|+.+|+
T Consensus       155 ~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~  184 (229)
T d1ixva_         155 ELLCGLGKSAVNWQDKQGWTPLFHALAEGH  184 (229)
T ss_dssp             HHHHTTTCCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             ccccccccccccccccccCCchhhhccccc
Confidence            9999987 7889999999999999999886

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.6e-27  Score=178.12  Aligned_cols=176  Identities=14%  Similarity=0.113  Sum_probs=121.6

Q ss_pred             ccCCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccc---cccHHHHHHHHHhCCcccccccCCCCC
Q 037129           22 QQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERE---NVSTKFVAEILEKCPLLLLQVNAKDDT   98 (227)
Q Consensus        22 ~~~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~g~t   98 (227)
                      ..+.+|||+||..|+.++|+.|++.|++++.+|..|+||||.|  +..++   ...+..+++.+.   ..+...+..|+|
T Consensus       105 ~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A--~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t  179 (301)
T d1sw6a_         105 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA--VKSVNNYDSGTFEALLDYLY---PCLILEDSMNRT  179 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHH--HHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHh--hhcccchhhhhHHHHHHHHh---hhhhhcccccCC
Confidence            3455689999999999999999999999999999999999999  77665   455566666553   346678889999


Q ss_pred             HHHHHHHcCCH----HH--------HHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHH---
Q 037129           99 PLHVAAKFGHS----DI--------VRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVV---  163 (227)
Q Consensus        99 pl~~A~~~~~~----~~--------v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~---  163 (227)
                      |||+++..+..    ..        +.++++.+......                 ....+.++++.+........+   
T Consensus       180 ~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~  242 (301)
T d1sw6a_         180 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS-----------------GTNEKESKPNDKNGERKDSILENL  242 (301)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEE-----------------C----------------CHHHHHC
T ss_pred             HHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhc-----------------ccccccchhHHHHhcchHHHHHHH
Confidence            99998865542    23        33444444332211                 122233333333322222222   


Q ss_pred             --HHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Q 037129          164 --EILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA  222 (227)
Q Consensus       164 --~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  222 (227)
                        ..++...   .+.+|..|+||||+|++.|+.+++++|+++|++++.+|..|.|||++|+
T Consensus       243 ~~~~~~~~~---in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         243 DLKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SHHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             hhHHHHhcC---ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence              2223222   3367899999999999999999999999999999999999999999986

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-26  Score=151.08  Aligned_cols=120  Identities=13%  Similarity=0.026  Sum_probs=108.6

Q ss_pred             CCHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCC-CHHHH
Q 037129           24 MDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDD-TPLHV  102 (227)
Q Consensus        24 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~-tpl~~  102 (227)
                      ..++||.|+..|++++|++|++.|++++..+..|.||||+|  + .|+.+++++|++.    +.+++.++..+. +|||+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a--~-~g~~~~v~~Ll~~----ga~~~~~~~~~~~~~L~~   75 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM--M-MGSARVAELLLLH----GAEPNCADPATLTRPVHD   75 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSS--C-TTCHHHHHHHHTT----TCCCCCCCTTTCCCHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcccccccccccccccc--c-ccccccccccccc----cccccccccccccccccc
Confidence            44679999999999999999999999999999999999977  5 5899999999885    677888888776 69999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHh
Q 037129          103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK  168 (227)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~  168 (227)
                      |++.|+.+++++|+++|.+.+.                  ++..|+||||+|+..|+.+++++|++
T Consensus        76 A~~~g~~~~v~~Ll~~ga~~~~------------------~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          76 AAREGFLDTLVVLHRAGARLDV------------------RDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSC------------------CCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccc------------------ccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999988664                  78999999999999999999999974

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=5.5e-27  Score=152.11  Aligned_cols=107  Identities=26%  Similarity=0.286  Sum_probs=100.8

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcc
Q 037129           97 DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS  176 (227)
Q Consensus        97 ~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~  176 (227)
                      .|||++|++.|+.+++++|+++|.+.+.                  ++..|+||||+|+..++.+++++|++.|+++. .
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~------------------~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din-~   63 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNR------------------TLEGGRKPLHYAADCGQLEILEFLLLKGADIN-A   63 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCC------------------CSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTT-C
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccc------------------ccccccccccccccccccccccccccccceee-e
Confidence            4799999999999999999999988765                  78899999999999999999999999999955 7


Q ss_pred             cccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Q 037129          177 ANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA  222 (227)
Q Consensus       177 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  222 (227)
                      ++..|.||||+|+..++.+++++|+++|++++.+|.+|.||||+|.
T Consensus        64 ~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          64 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             cccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            8899999999999999999999999999999999999999999874

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-25  Score=146.97  Aligned_cols=111  Identities=17%  Similarity=0.133  Sum_probs=98.3

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCc
Q 037129           96 DDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPY  175 (227)
Q Consensus        96 g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~  175 (227)
                      +.++||+|+..|+.+++++|+++|.+++.                  ++..|.||+|+|+ .|+.+++++|++.|+++. 
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~------------------~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~-   62 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNA------------------PNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-   62 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTC------------------CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcccc------------------ccccccccccccc-cccccccccccccccccc-
Confidence            45899999999999999999999988654                  7889999999775 789999999999999865 


Q ss_pred             ccccCC-CCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          176 SANNYG-KTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       176 ~~~~~~-~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ..+..+ .||||.|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+
T Consensus        63 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~  114 (125)
T d1bi7b_          63 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH  114 (125)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCC
Confidence            555554 579999999999999999999999999999999999999999886

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.92  E-value=6.1e-25  Score=164.12  Aligned_cols=165  Identities=22%  Similarity=0.167  Sum_probs=122.0

Q ss_pred             CCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHH
Q 037129           56 TENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGA  135 (227)
Q Consensus        56 ~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  135 (227)
                      .+.|+|+.|  +..|+.++|++|++.    |.+++..|..|+||||+|+..|+.+++++|+++|............++..
T Consensus        39 ~~~t~l~~A--~~~G~~~~v~~Ll~~----Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~  112 (291)
T d1s70b_          39 DDGAVFLAA--CSSGDTEEVLRLLER----GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHA  112 (291)
T ss_dssp             CHHHHHHHH--HHHTCHHHHHHHHHH----CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCchHHHHH--HHcCCHHHHHHHHHC----CCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccc
Confidence            356999999  999999999999986    77889999999999999999999999999999998765422211111111


Q ss_pred             H---------HHHH------HhccCCCCcHHHHHHhcCCHHHHHHHHhcC--------------------------CCCC
Q 037129          136 A---------WQII------RMTNKEKNTALHEAVCHQNVDVVEILTKED--------------------------PDYP  174 (227)
Q Consensus       136 ~---------~~~~------~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~--------------------------~~~~  174 (227)
                      .         ..++      ...+..+.+++++|+..+..+.++.++...                          ....
T Consensus       113 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (291)
T d1s70b_         113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (291)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             cccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccc
Confidence            0         0011      113344555555555555554444444321                          1112


Q ss_pred             cccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          175 YSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       175 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ...+..|.||||.|+..++.+++++|++.|++++.++..|.||||+|+..|+
T Consensus       193 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~  244 (291)
T d1s70b_         193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK  244 (291)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             ccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCC
Confidence            2455678999999999999999999999999999999999999999999886

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=1e-26  Score=150.84  Aligned_cols=107  Identities=20%  Similarity=0.140  Sum_probs=99.9

Q ss_pred             CHHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 037129           25 DPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAA  104 (227)
Q Consensus        25 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~  104 (227)
                      ++||.+|+..|++++|++|++.|++++..+..|.||||+|  +..++.++++++++.    +.+++.++..|+||||+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A--~~~~~~~~~~~ll~~----g~din~~d~~g~tpLh~A~   76 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYA--ADCGQLEILEFLLLK----GADINAPDKHHITPLLSAV   76 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHH--HHHSTTTHHHHHHHS----SCTTTCCSSSCSCHHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccccccccccccccc--ccccccccccccccc----cceeeecccccccchhhhh
Confidence            3689999999999999999999999999999999999999  999999999999985    7789999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHH
Q 037129          105 KFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAV  155 (227)
Q Consensus       105 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~  155 (227)
                      ..|+.+++++|+++|++.+.                  ++..|.||||+|.
T Consensus        77 ~~~~~~~v~~Ll~~Gad~~~------------------~d~~G~t~l~~a~  109 (118)
T d1myoa_          77 YEGHVSCVKLLLSKGADKTV------------------KGPDGLTALEATD  109 (118)
T ss_dssp             TTTCCHHHHHHHTTCCCSSS------------------SSSSTCCCCCTCS
T ss_pred             hcCchhhhhhhhccccccee------------------eCCCCCCHHHHHh
Confidence            99999999999999988765                  7899999999884

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.5e-24  Score=152.77  Aligned_cols=169  Identities=25%  Similarity=0.284  Sum_probs=142.9

Q ss_pred             CCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHH
Q 037129           56 TENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGA  135 (227)
Q Consensus        56 ~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  135 (227)
                      +|+||||+|  +..|+.++++.|++.+...+.+++.+|..|+||||+|+..|+.+++++|+++|+..+............
T Consensus         2 dG~TpLh~A--~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           2 DGDTPLHIA--VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL   79 (228)
T ss_dssp             TTCCHHHHH--HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCccHHHHH--HHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccc
Confidence            799999999  999999999999999888899999999999999999999999999999999998776544432222211


Q ss_pred             HH---------HH----------HHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHH
Q 037129          136 AW---------QI----------IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM  196 (227)
Q Consensus       136 ~~---------~~----------~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~  196 (227)
                      ..         ..          .........++++.+.........+.+.....+........+.++|+.|+..+...+
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  159 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  159 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhh
Confidence            10         00          122334567889999999999999999888777666777889999999999999999


Q ss_pred             HHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          197 VLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       197 v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      +++++++|.+++.+|..|.|||++|+.+|+
T Consensus       160 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~  189 (228)
T d1k1aa_         160 VQLLLQHGANVNAQMYSGSSALHSASGRGL  189 (228)
T ss_dssp             HHHHHHTTCCTTCBCTTSCBHHHHHHHHTC
T ss_pred             hhhhhhhccccccccccCcchHHHHHHcCC
Confidence            999999999999999999999999999886

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.2e-25  Score=146.17  Aligned_cols=121  Identities=18%  Similarity=0.202  Sum_probs=107.5

Q ss_pred             HHHHHHHhcCCchHHHhhHhhhhccccccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHH
Q 037129           26 PIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAK  105 (227)
Q Consensus        26 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~  105 (227)
                      +.|+.|+..|++++|+.|+++|.|++..|..|.||||+|  +..++.+++++|++.    +.+++.+|..|+||||+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A--~~~~~~~~~~~ll~~----g~~~~~~d~~g~tpLh~A~~   76 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNA--VCAGHTEIVKFLVQF----GVNVNAADSDGWTPLHCAAS   76 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHH--HHHTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccc--ccccccccccccccc----ccccccccccCcccccccch
Confidence            468999999999999999999999999999999999999  999999999999986    67888999999999999999


Q ss_pred             cCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHH--HhcCCHHHHHHHHhc
Q 037129          106 FGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEA--VCHQNVDVVEILTKE  169 (227)
Q Consensus       106 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A--~~~~~~~~~~~ll~~  169 (227)
                      +|+.+++++|+++|++++..                 ....+.|+++++  +..|+.+++++|+..
T Consensus        77 ~g~~~~v~~Ll~~ga~v~~~-----------------~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          77 CNNVQVCKFLVESGAAVFAM-----------------TYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             TTCHHHHHHHHHTTCCTTCC-----------------CSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCcccc-----------------cCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            99999999999999887641                 234577776655  567889999999864

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-23  Score=156.84  Aligned_cols=69  Identities=20%  Similarity=0.227  Sum_probs=63.5

Q ss_pred             ccCCCCcHHHHHHhcCCHHHHHHHHhc-CCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcccCC
Q 037129          143 TNKEKNTALHEAVCHQNVDVVEILTKE-DPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGP  212 (227)
Q Consensus       143 ~~~~~~t~l~~A~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~  212 (227)
                      ++..|.||||+|+..++.+++++|++. |.++ +.++.+|.||||+|+..++.+++++|+++|++++.+|.
T Consensus       215 ~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~di-n~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             cCCCCCCccchhhhcCcHHHHHHHHHcCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            678899999999999999999999975 6674 58899999999999999999999999999999999874

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.3e-24  Score=143.24  Aligned_cols=122  Identities=22%  Similarity=0.109  Sum_probs=100.8

Q ss_pred             chhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHH
Q 037129           59 TILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQ  138 (227)
Q Consensus        59 t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  138 (227)
                      ++|+.|  +..|+.+++++|++.    +.+++.+|..|+||||+|+..++.+++++|+++|...+.              
T Consensus         3 ~lL~~A--~~~G~~~~v~~Ll~~----g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~--------------   62 (130)
T d1ycsb1           3 ALLLDS--SLEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA--------------   62 (130)
T ss_dssp             HHHHHH--HHHTCHHHHHHHTST----TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC--------------
T ss_pred             HHHHHH--HHcCCHHHHHHHHHc----CCCcccccccccccccccccccccccccccccccccccc--------------
Confidence            578889  999999999988875    667888889999999999999999999999998877654              


Q ss_pred             HHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHH--HHcCcHHHHHHHHhcC
Q 037129          139 IIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMA--AESRSSNMVLALLENR  204 (227)
Q Consensus       139 ~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A--~~~~~~~~v~~Ll~~g  204 (227)
                          ++.+|+||||+|+..|+.+++++|+++|+++.......+.||++.+  ...|+.+++++|++.+
T Consensus        63 ----~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          63 ----ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             ----CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             ----ccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence                6888999999999999999999999999886644445688887665  5667889999988643

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.3e-23  Score=141.96  Aligned_cols=121  Identities=15%  Similarity=0.140  Sum_probs=80.9

Q ss_pred             HHHHHHhcCCchHHHhhHhhhhccccc------cCCCCchhhhhhhhcc---cccccHHHHHHHHHhCCcccccccCCCC
Q 037129           27 IFFNAAAAGNSEPFKDMAGEEIKSLLT------AKTENTILHINIISQE---RENVSTKFVAEILEKCPLLLLQVNAKDD   97 (227)
Q Consensus        27 ~l~~a~~~g~~~~v~~ll~~~~~~~~~------~~~g~t~L~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~g~   97 (227)
                      .|+.|+..+++..+..++..|.++...      +..|.||||+|  +..   +..+++++|++.    +.+++.++..|+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A--~~~~~~~~~~iv~~Ll~~----gadin~~d~~g~   82 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLA--VRSVDRTSLHIVDFLVQN----SGNLDKQTGKGS   82 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHH--HHHCCTTTHHHHHHHHHH----CSCTTCCCTTCC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHH--HHhcCCCCHHHHHHHHHc----CCChhhhhhhhc
Confidence            478899999999999999888775532      44566777776  432   445566666654    555666666666


Q ss_pred             CHHHHHHHcCCHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 037129           98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDP  171 (227)
Q Consensus        98 tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~  171 (227)
                      ||||+|+..|+.+++++|+++|++.+.                  ++..|.||||+|+..|+.+++++|++.+.
T Consensus        83 TpLh~A~~~~~~~~v~~Ll~~gad~~~------------------~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          83 TALHYCCLTDNAECLKLLLRGKASIEI------------------ANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccccccccCccccc------------------cCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            666666666666666666666665443                  56666666666666666666666666543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=4.5e-23  Score=146.64  Aligned_cols=166  Identities=22%  Similarity=0.194  Sum_probs=146.5

Q ss_pred             chHHHhhHhhhhcccc-ccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHH
Q 037129           37 SEPFKDMAGEEIKSLL-TAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFL  115 (227)
Q Consensus        37 ~~~v~~ll~~~~~~~~-~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~L  115 (227)
                      .++|++|+++|.|++. .|.+|.||||+|  +..|+.+++++|++.    +..++.++..+.++++.++..++.......
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A--~~~g~~e~v~~Ll~~----g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLA--ARFARADAAKRLLDA----GADANSQDNTGRTPLHAAVAADAMGVFQIL   75 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHH--HHcCCHHHHHHHHhh----cccccccccccccccccccccccccccccc
Confidence            4789999999999985 688999999999  999999999999986    777888999999999999999998887776


Q ss_pred             HHhhhcccccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHH
Q 037129          116 VERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSN  195 (227)
Q Consensus       116 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~  195 (227)
                      .........                 .....+.++.+.+.........+.|...+.++. ..+..|.|||+.++..+...
T Consensus        76 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~-~~~~~~~t~l~~~~~~~~~~  137 (209)
T d1ot8a_          76 LRNRATNLN-----------------ARMHDGTTPLILAARLAIEGMVEDLITADADIN-AADNSGKTALHWAAAVNNTE  137 (209)
T ss_dssp             HTCTTCCTT-----------------CCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHH
T ss_pred             ccccccccc-----------------cccccccccccccccccchhhhhhhhhhccccc-ccCCCCCCcchhhcccCcce
Confidence            665443322                 245677889999999999999999999988854 77889999999999999999


Q ss_pred             HHHHHHhcCCCCcccCCCCCCHHHHHHHhcC
Q 037129          196 MVLALLENRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       196 ~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      +++.+++.+.+++..|..|.||||+|+.+|+
T Consensus       138 ~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~  168 (209)
T d1ot8a_         138 AVNILLMHHANRDAQDDKDETPLFLAAREGS  168 (209)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             eeeeeccccccccccccccccccchhccccH
Confidence            9999999999999999999999999999886

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=6.3e-22  Score=133.51  Aligned_cols=121  Identities=22%  Similarity=0.238  Sum_probs=99.0

Q ss_pred             hhhhhhhcccccccHHHHHHHHHhCCcccc------cccCCCCCHHHHHHHc---CCHHHHHHHHHhhhcccccchhhhh
Q 037129           61 LHINIISQERENVSTKFVAEILEKCPLLLL------QVNAKDDTPLHVAAKF---GHSDIVRFLVERAKLTQHENEELES  131 (227)
Q Consensus        61 L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~g~tpl~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~  131 (227)
                      |..|  ++.+++..+..++..    +.+++      ..+..|+||||+|++.   +..+++++|+++|++.+.       
T Consensus        10 L~~A--v~~~dl~~l~~~~~~----g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~-------   76 (154)
T d1dcqa1          10 LCEA--VKTRDIFGLLQAYAD----GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK-------   76 (154)
T ss_dssp             HHHH--HHTTCHHHHHHHHHT----TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC-------
T ss_pred             HHHH--HHhCCHHHHHHHHHc----CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhh-------
Confidence            3455  667776555555443    33322      2366799999999975   678999999999988654       


Q ss_pred             hHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCC
Q 037129          132 RVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTS  206 (227)
Q Consensus       132 ~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  206 (227)
                                 ++..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++.+..
T Consensus        77 -----------~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          77 -----------QTGKGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             -----------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             -----------hhhhhccccccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence                       7899999999999999999999999999996 48899999999999999999999999997643

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.86  E-value=1.9e-25  Score=170.86  Aligned_cols=140  Identities=14%  Similarity=0.108  Sum_probs=113.2

Q ss_pred             cccCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccchhhhh
Q 037129           52 LTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELES  131 (227)
Q Consensus        52 ~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  131 (227)
                      .++..|.|||++|  +..|+.++++++... ...+..++.++..|+||||+||..|+.++|++|++.|+..+.       
T Consensus        85 ~~~~~~~t~L~~A--a~~g~~~~~~~~~~L-~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~-------  154 (346)
T d2ajaa1          85 KKGIKSEVICFVA--AITGCSSALDTLCLL-LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM-------  154 (346)
T ss_dssp             HHTCCHHHHHHHH--HHHCCHHHHHHHTTC---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHH-------
T ss_pred             hccCCCCcHHHHH--HHhCCHHHHHHHHHH-HhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc-------
Confidence            4566889999999  999999888875432 234788999999999999999999999999999999987653       


Q ss_pred             hHHHHHHHHHhccCCCCcHHHHHHhcCCHHHHHHHHhcCCCCC--cccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcc
Q 037129          132 RVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYP--YSANNYGKTPLYMAAESRSSNMVLALLENRTSVSH  209 (227)
Q Consensus       132 ~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ll~~~~~~~--~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~  209 (227)
                               ...+.+|.||||+|+..|+.+++++|++.|+...  ...+..+.||++.|+..|+.+++++|++.|++++.
T Consensus       155 ---------~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~  225 (346)
T d2ajaa1         155 ---------AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY  225 (346)
T ss_dssp             ---------HHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHH
T ss_pred             ---------cccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcch
Confidence                     1134568999999999999999999999987632  23345567888889999999999999999987754


Q ss_pred             c
Q 037129          210 E  210 (227)
Q Consensus       210 ~  210 (227)
                      .
T Consensus       226 ~  226 (346)
T d2ajaa1         226 A  226 (346)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=9.7e-20  Score=136.39  Aligned_cols=157  Identities=15%  Similarity=0.090  Sum_probs=98.8

Q ss_pred             hhccccc-cCCCCchhhhhhhhcccccccHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCH---HHHHHHHHhhhcc
Q 037129           47 EIKSLLT-AKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHS---DIVRFLVERAKLT  122 (227)
Q Consensus        47 ~~~~~~~-~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~---~~v~~Ll~~~~~~  122 (227)
                      +++++.. |..|+||||+|  +..|+.+++++|++.    +.+++.+|..|+||||.|+..++.   +.++.+++.....
T Consensus        96 ~~dvn~~~D~~G~T~LH~A--a~~g~~~~v~~Ll~~----gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~  169 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWL--TSIANLELVKHLVKH----GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC  169 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG
T ss_pred             CCCcCcCcCCCCCCHHHHH--HHcCCHHHHHHHHHC----CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh
Confidence            4566643 88999999999  999999999999986    778899999999999999998762   2333444432221


Q ss_pred             cccchhhhhhHHHHHHHHHhccCCCCcHHHHHHhcCC----HH--------HHHHHHhcCCCCCcccccCCCCHHHHHHH
Q 037129          123 QHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQN----VD--------VVEILTKEDPDYPYSANNYGKTPLYMAAE  190 (227)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~----~~--------~~~~ll~~~~~~~~~~~~~~~t~l~~A~~  190 (227)
                                       ....+..|+||||+++..+.    ..        ++.++.+.+..........+.++++.+..
T Consensus       170 -----------------~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  232 (301)
T d1sw6a_         170 -----------------LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG  232 (301)
T ss_dssp             -----------------GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------
T ss_pred             -----------------hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHh
Confidence                             12367889999998886543    22        33455555555444455556666666555


Q ss_pred             cCcHHHHHHHH-h--cCCCCcccCCCCCCHHHHHHHhcC
Q 037129          191 SRSSNMVLALL-E--NRTSVSHEGPNGKTALHAAAMRSY  226 (227)
Q Consensus       191 ~~~~~~v~~Ll-~--~g~~~~~~~~~g~t~l~~a~~~~~  226 (227)
                      ......+..+. .  .+..++.+|.+|+||||+|+++|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~  271 (301)
T d1sw6a_         233 ERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN  271 (301)
T ss_dssp             ---CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCC
T ss_pred             cchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCC
Confidence            44443333221 1  123378899999999999999986