Citrus Sinensis ID: 037135

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
QEGNESSETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTGN
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
qegnesseTEAIKAKIISHPQYSSLLEAYVDcqkvgappEVVARLAAARQEFESRqrsslnsrdstnkdpelDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNmlsngpvrifnstgn
Flexible Loop (DISEMBL)
QEGNESSETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEfesrqrsslnsrdstnkdpeldQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETqlnmlsngpvrifnstgn
Low Complexity Region (SEG)
QEGNESSETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTGN
Disordered region (IsUnstruct)
**************KIISHPQYSSLLEAYVDCQKVGAPPEVVAR*****************************QFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPV********
Disordered Region (DISOPRED)
************KAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLA**************************DQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNM**************
Disordered Region (DISEMBL)
***********IKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAAR*****************NKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTGN
Disordered Region (DISPRO)
********TEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQR********TNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSN***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QEGNESSETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
O04135	397	Homeobox protein knotted-	N/A	no	0.911	0.284	0.796	5e-49
Q41330	355	Homeotic protein knotted-	N/A	no	0.895	0.312	0.785	5e-48
O04134	398	Homeobox protein knotted-	N/A	no	0.935	0.291	0.760	7e-48
P46639	398	Homeobox protein knotted-	yes	no	0.927	0.288	0.686	6e-44
Q43484	364	Homeobox protein KNOX3 OS	N/A	no	0.854	0.291	0.710	6e-40
P46609	361	Homeobox protein knotted-	yes	no	0.838	0.288	0.714	1e-39
P24345	359	Homeotic protein knotted-	N/A	no	0.854	0.295	0.654	4e-36
O80416	355	Homeobox protein knotted-	yes	no	0.814	0.284	0.594	7e-32
O65034	355	Homeobox protein knotted-	N/A	no	0.814	0.284	0.594	7e-32
Q75LX7	337	Homeobox protein knotted-	no	no	0.830	0.305	0.590	1e-29

>sp|O04135|KNAP2_MALDO Homeobox protein knotted-1-like 2 OS=Malus domestica PE=2 SV=1

 Score =  192 bits (488), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 106/118 (89%), Gaps = 5/118 (4%)

Query: 6   SSETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDS 65
           S+E EAIKAKII+HPQYS+LLEAY+DCQ+VGAP +VVARL+ ARQEFE+RQRSS  SR+ 
Sbjct: 126 SNEVEAIKAKIIAHPQYSNLLEAYMDCQRVGAPSDVVARLSVARQEFEARQRSSGTSRE- 184

Query: 66  TNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNG----PVRIF 119
           T+KDPELDQFMEAYYDMLVKYREELTRPIQEAMDF+RRIETQLNML N     P+RIF
Sbjct: 185 TSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLGNNNNAPPLRIF 242

Probably binds to the DNA sequence 5'-TGAC-3'.
Malus domestica (taxid: 3750)

>sp|Q41330|KN1_SOLLC Homeotic protein knotted-1 OS=Solanum lycopersicum GN=KN1 PE=2 SV=1

 Score =  189 bits (479), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 101/112 (90%), Gaps = 1/112 (0%)

Query: 10  EAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDSTNKD 69
           EA+KAKII+HPQ S+LL+AY+DCQKVGAPPEV ARL+A RQEFE+RQR SL  RD  +KD
Sbjct: 92  EALKAKIIAHPQCSNLLDAYMDCQKVGAPPEVAARLSAVRQEFEARQRRSLTDRD-VSKD 150

Query: 70  PELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNS 121
           PELDQFMEAYYDMLVKYREELTRP+QEAM+F+++IE QLNML N PVRIFNS
Sbjct: 151 PELDQFMEAYYDMLVKYREELTRPLQEAMEFMQKIEAQLNMLGNAPVRIFNS 202

Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.

Solanum lycopersicum (taxid: 4081)

>sp|O04134|KNAP1_MALDO Homeobox protein knotted-1-like 1 OS=Malus domestica PE=2 SV=1

 Score =  188 bits (478), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 92/121 (76%), Positives = 107/121 (88%), Gaps = 5/121 (4%)

Query: 6   SSETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDS 65
           S+E EAIKAKII+HPQYS+L+EAY+DCQ+VGAP +VV RL+ ARQEFE+RQRSS  SR+ 
Sbjct: 127 SNEVEAIKAKIIAHPQYSNLVEAYMDCQRVGAPSDVVPRLSVARQEFEARQRSSGTSRE- 185

Query: 66  TNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNG----PVRIFNS 121
           T+KDPELDQFMEAYYDMLVKYREELTRPIQEAMDF+RRIETQLNML N     P+RIF+ 
Sbjct: 186 TSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLGNNNNAPPLRIFSP 245

Query: 122 T 122
           +
Sbjct: 246 S 246

Probably binds to the DNA sequence 5'-TGAC-3'.

Malus domestica (taxid: 3750)

>sp|P46639|KNAT1_ARATH Homeobox protein knotted-1-like 1 OS=Arabidopsis thaliana GN=KNAT1 PE=1 SV=1

 Score =  176 bits (445), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 79/115 (68%), Positives = 100/115 (86%)

Query: 7   SETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDST 66
           S+ EA+KAKII+HP YS+LL+AY+DCQK+GAPP+VV R+ AARQ+FE+RQ+ S  S  ++
Sbjct: 129 SDVEAMKAKIIAHPHYSTLLQAYLDCQKIGAPPDVVDRITAARQDFEARQQRSTPSVSAS 188

Query: 67  NKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNS 121
           ++DPELDQFMEAY DMLVKYREELTRPIQEAM+FIRRIE+QL+ML   P+ I N+
Sbjct: 189 SRDPELDQFMEAYCDMLVKYREELTRPIQEAMEFIRRIESQLSMLCQSPIHILNN 243

May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state, and its expression disappears at the same time the shoot apex undergoes the transition from vegetative to reproductive development. Positive regulator of LATERAL ORGAN BOUNDARIES (LOB). Probably binds to the DNA sequence 5'-TGAC-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q43484|KNOX3_HORVU Homeobox protein KNOX3 OS=Hordeum vulgare GN=KNOX3 PE=1 SV=1

 Score =  162 bits (409), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 76/107 (71%), Positives = 90/107 (84%), Gaps = 1/107 (0%)

Query: 6   SSETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDS 65
           +++ EAIKAKIISHP YSSLL AY+DCQKVGAPPEV ARL A  Q+ E RQR++L     
Sbjct: 102 AADVEAIKAKIISHPHYSSLLAAYLDCQKVGAPPEVSARLTAVAQDLELRQRTALGGL-G 160

Query: 66  TNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLS 112
           T  +PELDQFMEAY++MLVKYREELTRP+QEAM+F+RR+ETQLN LS
Sbjct: 161 TATEPELDQFMEAYHEMLVKYREELTRPLQEAMEFLRRVETQLNSLS 207

May play a role in meristem formation and/or maintenance. Overexpression causes the hooded phenotype characterized by the appearance of an extra flower of inverse polarity on the lemma. Binds to the DNA sequence 5'-TGAC-3'.

Hordeum vulgare (taxid: 4513)

>sp|P46609|KNOS6_ORYSJ Homeobox protein knotted-1-like 6 OS=Oryza sativa subsp. japonica GN=OSH1 PE=2 SV=2

 Score =  160 bits (406), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 88/105 (83%), Gaps = 1/105 (0%)

Query: 8   ETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDSTN 67
           + EAIKAKIISHP YSSLL AY+DCQKVGAPPEV ARL A  Q+ E RQR++L    +  
Sbjct: 100 DVEAIKAKIISHPHYSSLLAAYLDCQKVGAPPEVAARLTAVAQDLELRQRTALGVLGAAT 159

Query: 68  KDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLS 112
            +PELDQFMEAY++MLVKYREELTRP+QEAM+F+RR+ETQLN LS
Sbjct: 160 -EPELDQFMEAYHEMLVKYREELTRPLQEAMEFLRRVETQLNTLS 203

Probable transcription factor that regulates genes involved in development. May be involved in shoot formation during embryogenesis. Overexpression in transgenic plants causes altered leaf morphology. Probably binds to the DNA sequence 5'-TGAC-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P24345|KN1_MAIZE Homeotic protein knotted-1 OS=Zea mays GN=KN-1 PE=2 SV=1

 Score =  149 bits (377), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 70/107 (65%), Positives = 87/107 (81%), Gaps = 1/107 (0%)

Query: 6   SSETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDS 65
           + + EAIKAKIISHP Y SLL AY++C KVGAPPEV ARL    QE E+RQR++L    +
Sbjct: 98  AGDVEAIKAKIISHPHYYSLLTAYLECNKVGAPPEVSARLTEIAQEVEARQRTALGGLAA 157

Query: 66  TNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLS 112
              +PELDQFMEAY++MLVK+REELTRP+QEAM+F+RR+E+QLN LS
Sbjct: 158 AT-EPELDQFMEAYHEMLVKFREELTRPLQEAMEFMRRVESQLNSLS 203

Possible transcription factor that regulates genes involved in development. Mutations in KN-1 alter leaf development. Foci of cells along the lateral vein do not differentiate properly but continue to divide, forming knots. May participate in the switch from indeterminate to determinate cell fates. Probably binds to the DNA sequence 5'-TGAC-3'.

Zea mays (taxid: 4577)

>sp|O80416|KNOSC_ORYSJ Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. japonica GN=OSH15 PE=2 SV=1

 Score =  135 bits (340), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 84/106 (79%), Gaps = 5/106 (4%)

Query: 6   SSETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDS 65
           ++E E+IKAKI++HPQYS+LL AY+DCQKVGAPPEV+ RL A   + ++R     ++RD 
Sbjct: 85  AAEAESIKAKIMAHPQYSALLAAYLDCQKVGAPPEVLERLTATAAKLDARPPGRHDARD- 143

Query: 66  TNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNML 111
               PELDQFMEAY +ML KYREELTRPI EAM+F++R+E+QL+ +
Sbjct: 144 ----PELDQFMEAYCNMLAKYREELTRPIDEAMEFLKRVESQLDTI 185

Probable transcription factor that may be involved in shoot formation during embryogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O65034|KNOSC_ORYSI Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. indica GN=OSH15 PE=2 SV=2

 Score =  135 bits (340), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 84/106 (79%), Gaps = 5/106 (4%)

Query: 6   SSETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDS 65
           ++E E+IKAKI++HPQYS+LL AY+DCQKVGAPPEV+ RL A   + ++R     ++RD 
Sbjct: 85  AAEAESIKAKIMAHPQYSALLAAYLDCQKVGAPPEVLERLTATAAKLDARPPGRHDARD- 143

Query: 66  TNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNML 111
               PELDQFMEAY +ML KYREELTRPI EAM+F++R+E+QL+ +
Sbjct: 144 ----PELDQFMEAYCNMLAKYREELTRPIDEAMEFLKRVESQLDTI 185

Probable transcription factor that may be involved in shoot formation during embryogenesis.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q75LX7|KNOS4_ORYSJ Homeobox protein knotted-1-like 4 OS=Oryza sativa subsp. japonica GN=OSH10 PE=2 SV=1

 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 8   ETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDSTN 67
           ET+AIKAKI+SHP Y +LL A++DCQKVGAPPEVV RL+A   E +SR         S+ 
Sbjct: 58  ETDAIKAKIMSHPLYPALLRAFIDCQKVGAPPEVVGRLSALAGELDSRAEDRYLQGQSS- 116

Query: 68  KDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLS 112
            DPELD+FME Y DMLV YR+ELTRPIQEA  F R +E Q++  +
Sbjct: 117 -DPELDEFMETYIDMLVSYRQELTRPIQEADQFFRNMEAQIDSFT 160

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
225458942	370	PREDICTED: homeobox protein knotted-1-li	0.951	0.318	0.85	1e-52
302142140	341	unnamed protein product [Vitis vinifera]	0.951	0.346	0.85	2e-52
388556558	385	homeobox protein knotted-1-like 2-like [	0.919	0.296	0.834	7e-52
429326570	368	knotted-like protein [Populus tomentosa]	0.903	0.304	0.867	8e-52
55276122	368	homeobox transcription factor KN3 [Popul	0.903	0.304	0.858	1e-51
224063413	368	predicted protein [Populus trichocarpa]	0.903	0.304	0.858	1e-51
132424653	288	class I KNOX homeobox transcription fact	0.935	0.402	0.829	4e-51
56236458	368	knotted-like homeobox protein [Populus t	0.903	0.304	0.858	1e-50
3462614	251	knotted I class homeodomain protein [Pis	0.943	0.466	0.805	2e-50
356577702	323	PREDICTED: homeobox protein knotted-1-li	0.919	0.352	0.817	5e-50

>gi|225458942|ref|XP_002285521.1| PREDICTED: homeobox protein knotted-1-like 2 [Vitis vinifera]

 Score =  209 bits (533), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 102/120 (85%), Positives = 111/120 (92%), Gaps = 2/120 (1%)

Query: 3   GNES-SETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLN 61
           GNES SE EAIKAKII+HPQYS+LLEAY+DCQKVGAPPEVV RLAA RQEFESRQRSS+ 
Sbjct: 100 GNESFSEVEAIKAKIIAHPQYSNLLEAYMDCQKVGAPPEVVERLAAVRQEFESRQRSSVT 159

Query: 62  SRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNS 121
            RD++ KDPELDQFMEAYYDMLVKYREELTRP+QEA DF+RRIE+QLNMLSNGPVRIF S
Sbjct: 160 CRDAS-KDPELDQFMEAYYDMLVKYREELTRPLQEATDFMRRIESQLNMLSNGPVRIFTS 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142140|emb|CBI19343.3| unnamed protein product [Vitis vinifera]

 Score =  209 bits (532), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/120 (85%), Positives = 111/120 (92%), Gaps = 2/120 (1%)

Query: 3   GNES-SETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLN 61
           GNES SE EAIKAKII+HPQYS+LLEAY+DCQKVGAPPEVV RLAA RQEFESRQRSS+ 
Sbjct: 71  GNESFSEVEAIKAKIIAHPQYSNLLEAYMDCQKVGAPPEVVERLAAVRQEFESRQRSSVT 130

Query: 62  SRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNS 121
            RD++ KDPELDQFMEAYYDMLVKYREELTRP+QEA DF+RRIE+QLNMLSNGPVRIF S
Sbjct: 131 CRDAS-KDPELDQFMEAYYDMLVKYREELTRPLQEATDFMRRIESQLNMLSNGPVRIFTS 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388556558|ref|NP_001253999.1| homeobox protein knotted-1-like 2-like [Glycine max] gi|302135385|gb|ADK94035.1| KNOX-like DNA-binding protein [Glycine max]

 Score =  207 bits (527), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 96/115 (83%), Positives = 110/115 (95%), Gaps = 1/115 (0%)

Query: 6   SSETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDS 65
           + E EAIKAKII+HPQYS++LEAY+DCQK+GAPPEVVAR+AAA+QEFE+RQRSS+ SR+ 
Sbjct: 120 TGEVEAIKAKIIAHPQYSNVLEAYMDCQKIGAPPEVVARMAAAKQEFEARQRSSVGSRE- 178

Query: 66  TNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFN 120
           T+KDPELDQFMEAYYDMLVKYREELTRPIQEAMDF+RRIETQLNML NGPVRIF+
Sbjct: 179 TSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFS 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326570|gb|AFZ78625.1| knotted-like protein [Populus tomentosa]

 Score =  207 bits (526), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 98/113 (86%), Positives = 108/113 (95%), Gaps = 1/113 (0%)

Query: 9   TEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDSTNK 68
            EAIKAKII+HPQYS+LLEAY+DCQKVGAPPEVVARLAAARQEFESRQRS + SRD++ K
Sbjct: 105 VEAIKAKIIAHPQYSNLLEAYMDCQKVGAPPEVVARLAAARQEFESRQRSFITSRDNS-K 163

Query: 69  DPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNS 121
           DPELDQFMEAYYDMLVKYREELTRPIQEAMDF+RRIETQLNM+ +GP+RIFNS
Sbjct: 164 DPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMICHGPLRIFNS 216

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55276122|gb|AAV49802.1| homeobox transcription factor KN3 [Populus trichocarpa x Populus deltoides]

 Score =  206 bits (524), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/113 (85%), Positives = 108/113 (95%), Gaps = 1/113 (0%)

Query: 9   TEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDSTNK 68
            EAIKAKII+HPQYS+L+EAY+DCQKVGAPPEVVARLAAARQEFESRQRS + SRD++ K
Sbjct: 105 VEAIKAKIIAHPQYSNLMEAYMDCQKVGAPPEVVARLAAARQEFESRQRSFITSRDNS-K 163

Query: 69  DPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNS 121
           DPELDQFMEAYYDMLVKYREELTRPIQEAMDF+RRIETQLNM+ +GP+RIFNS
Sbjct: 164 DPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMICHGPLRIFNS 216

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063413|ref|XP_002301134.1| predicted protein [Populus trichocarpa] gi|222842860|gb|EEE80407.1| predicted protein [Populus trichocarpa] gi|225626279|gb|ACN97189.1| KNOX transcription factor [Populus trichocarpa]

 Score =  206 bits (524), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/113 (85%), Positives = 108/113 (95%), Gaps = 1/113 (0%)

Query: 9   TEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDSTNK 68
            EAIKAKII+HPQYS+L+EAY+DCQKVGAPPEVVARLAAARQEFESRQRS + SRD++ K
Sbjct: 105 VEAIKAKIIAHPQYSNLMEAYMDCQKVGAPPEVVARLAAARQEFESRQRSFITSRDNS-K 163

Query: 69  DPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNS 121
           DPELDQFMEAYYDMLVKYREELTRPIQEAMDF+RRIETQLNM+ +GP+RIFNS
Sbjct: 164 DPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMICHGPLRIFNS 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|132424653|gb|ABO33479.1| class I KNOX homeobox transcription factor [Medicago truncatula]

 Score =  204 bits (520), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 97/117 (82%), Positives = 108/117 (92%), Gaps = 1/117 (0%)

Query: 8   ETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDSTN 67
           E EAIKAKII+HPQYSSLL+AY+DCQK+GAPPEVVARL A+RQEFE+RQRSS+NSR+ T+
Sbjct: 24  EAEAIKAKIIAHPQYSSLLQAYMDCQKIGAPPEVVARLVASRQEFEARQRSSVNSRE-TS 82

Query: 68  KDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTGN 124
           KDPELDQFMEAYYDMLVKYREELTRPIQEAMDF+RRIETQLN L NGP+RIF    N
Sbjct: 83  KDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNTLCNGPLRIFPDDKN 139

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56236458|gb|AAV84585.1| knotted-like homeobox protein [Populus tomentosa]

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/113 (85%), Positives = 107/113 (94%), Gaps = 1/113 (0%)

Query: 9   TEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDSTNK 68
            EAIKAKII+HPQYS+LLEAY+DCQKVGAPPEVVARLAAARQEFESRQRS + SRD++ K
Sbjct: 105 VEAIKAKIIAHPQYSNLLEAYMDCQKVGAPPEVVARLAAARQEFESRQRSFITSRDNS-K 163

Query: 69  DPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNS 121
           DPELDQFMEAY DMLVKYREELTRPIQEAMDF+RRIETQLNM+ +GP+RIFNS
Sbjct: 164 DPELDQFMEAYCDMLVKYREELTRPIQEAMDFMRRIETQLNMICHGPLRIFNS 216

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3462614|gb|AAC33009.1| knotted I class homeodomain protein [Pisum sativum]

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/118 (80%), Positives = 108/118 (91%), Gaps = 1/118 (0%)

Query: 7   SETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDST 66
           +E E+IKAKII+HPQYSSLL+AY+DCQK+GAPPE VAR+  ARQEFE+RQRSS+NSR+S+
Sbjct: 111 NEAESIKAKIIAHPQYSSLLQAYMDCQKIGAPPEAVARMVEARQEFEARQRSSVNSRESS 170

Query: 67  NKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTGN 124
            KDPELDQFMEAYYDMLVKYREELTRPIQEAMDF+RRIETQLNML NGP+RIF    N
Sbjct: 171 -KDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPLRIFPDDKN 227

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577702|ref|XP_003556963.1| PREDICTED: homeobox protein knotted-1-like 2-like, partial [Glycine max]

 Score =  201 bits (510), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 94/115 (81%), Positives = 107/115 (93%), Gaps = 1/115 (0%)

Query: 6   SSETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDS 65
           + E EAIKAKII+HPQYS+LLEAY+DCQK+GA PEVVAR+ AA+QEFE+RQRSS+ SR+ 
Sbjct: 58  TGEVEAIKAKIIAHPQYSNLLEAYMDCQKIGATPEVVARMVAAKQEFEARQRSSVGSRE- 116

Query: 66  TNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFN 120
           T+KDPELDQFMEAYYDMLVKYREELTRPIQEAMDF+RRIETQLNML NGPVRI +
Sbjct: 117 TSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRILS 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
TAIR|locus:2128828	398	KNAT1 "KNOTTED-like from Arabi	0.927	0.288	0.686	1.1e-39
UNIPROTKB|P46609	361	OSH1 "Homeobox protein knotted	0.854	0.293	0.700	1.2e-35
TAIR|locus:2027089	382	STM "SHOOT MERISTEMLESS" [Arab	0.959	0.311	0.491	4.6e-25
TAIR|locus:2026810	310	KNAT2 "KNOTTED-like from Arabi	0.919	0.367	0.443	3.9e-21
TAIR|locus:2146945	431	KNAT3 "KNOTTED1-like homeobox	0.895	0.257	0.310	7.3e-08
TAIR|locus:2184911	393	KNAT4 "KNOTTED1-like homeobox	0.717	0.226	0.319	5.9e-07
TAIR|locus:2116632	383	KNAT5 "KNOTTED1-like homeobox	0.879	0.284	0.280	9.4e-07
TAIR|locus:2015554	291	KNAT7 "KNOTTED-like homeobox o	0.862	0.367	0.276	1.2e-06

TAIR|locus:2128828 KNAT1 "KNOTTED-like from Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 79/115 (68%), Positives = 100/115 (86%)

Query:     7 SETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDST 66
             S+ EA+KAKII+HP YS+LL+AY+DCQK+GAPP+VV R+ AARQ+FE+RQ+ S  S  ++
Sbjct:   129 SDVEAMKAKIIAHPHYSTLLQAYLDCQKIGAPPDVVDRITAARQDFEARQQRSTPSVSAS 188

Query:    67 NKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNS 121
             ++DPELDQFMEAY DMLVKYREELTRPIQEAM+FIRRIE+QL+ML   P+ I N+
Sbjct:   189 SRDPELDQFMEAYCDMLVKYREELTRPIQEAMEFIRRIESQLSMLCQSPIHILNN 243

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045165 "cell fate commitment" evidence=IMP

GO:0010051 "xylem and phloem pattern formation" evidence=RCA;IMP

GO:0007389 "pattern specification process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048513 "organ development" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0001708 "cell fate specification" evidence=IMP

UNIPROTKB|P46609 OSH1 "Homeobox protein knotted-1-like 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 75/107 (70%), Positives = 90/107 (84%)

Query:     6 SSETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDS 65
             +++ EAIKAKIISHP YSSLL AY+DCQKVGAPPEV ARL A  Q+ E RQR++L    +
Sbjct:    98 AADVEAIKAKIISHPHYSSLLAAYLDCQKVGAPPEVAARLTAVAQDLELRQRTALGVLGA 157

Query:    66 TNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLS 112
                +PELDQFMEAY++MLVKYREELTRP+QEAM+F+RR+ETQLN LS
Sbjct:   158 AT-EPELDQFMEAYHEMLVKYREELTRPLQEAMEFLRRVETQLNTLS 203

GO:0003677 "DNA binding" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IGI

TAIR|locus:2027089 STM "SHOOT MERISTEMLESS" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 59/120 (49%), Positives = 79/120 (65%)

Query:     4 NESSETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSR 63
             + SS + ++KAKI++HP Y  LL AYV+CQKVGAPPEVVARL  A     +   +S+   
Sbjct:   113 SSSSSSASVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACSS-AAAAAASMGPT 171

Query:    64 DSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTG 123
                 +DP LDQFMEAY +MLVKY +EL++P +EAM F++R+E Q   LS      F+  G
Sbjct:   172 GCLGEDPGLDQFMEAYCEMLVKYEQELSKPFKEAMVFLQRVECQFKSLSLSSPSSFSGYG 231

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0019827 "stem cell maintenance" evidence=TAS

GO:0009934 "regulation of meristem structural organization" evidence=IMP

GO:0009691 "cytokinin biosynthetic process" evidence=TAS

GO:0048440 "carpel development" evidence=RCA;IMP

GO:0007389 "pattern specification process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0048513 "organ development" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2026810 KNAT2 "KNOTTED-like from Arabidopsis thaliana 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 51/115 (44%), Positives = 68/115 (59%)

Query:     1 QEGNESSETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSL 60
             ++  ++     IK+KI SHP Y  LL+ Y+DCQKVGAP E+   L   ++E    +R  +
Sbjct:    58 RKAEDNFSLSVIKSKIASHPLYPRLLQTYIDCQKVGAPMEIACILEEIQRENHVYKRD-V 116

Query:    61 NSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGP 115
                     DPELD+FME Y D+LVKY+ +L RP  EA  FI +IE QL  L  GP
Sbjct:   117 APLSCFGADPELDEFMETYCDILVKYKTDLARPFDEATTFINKIEMQLQNLCTGP 171

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010094 "specification of carpel identity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009723 "response to ethylene stimulus" evidence=IGI

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2146945 KNAT3 "KNOTTED1-like homeobox gene 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 7.3e-08, P = 7.3e-08
 Identities = 37/119 (31%), Positives = 63/119 (52%)

Query:     2 EGNESSETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAA--ARQEFESRQRSS 59
             +G  S +    KA+I+SHP Y  LL A+V C ++  P + + R+ A  A+ +    + S+
Sbjct:   149 DGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVAKYSA 208

Query:    60 LNS--RDSTNKDPELDQFMEAYYDMLVKYREELTRPIQ-EAMDFIR---RIETQLNMLS 112
             L +  +     D ELDQFM  Y  +L  ++E+L + ++  AM+ +     IE  L  L+
Sbjct:   209 LGAAAQGLVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLT 267

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0009722 "detection of cytokinin stimulus" evidence=IEP

GO:0071345 "cellular response to cytokine stimulus" evidence=IDA

GO:0048513 "organ development" evidence=RCA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2184911 KNAT4 "KNOTTED1-like homeobox gene 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 5.9e-07, P = 5.9e-07
 Identities = 30/94 (31%), Positives = 52/94 (55%)

Query:    13 KAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAA--ARQEFESRQRSSLNSRDS--TNK 68
             KA+I+SHP Y  LL A+V C ++  P + + R+ A  A+ +    + S+L +        
Sbjct:   124 KAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTLEAAQGLLAGD 183

Query:    69 DPELDQFMEAYYDMLVKYREELTRPIQ-EAMDFI 101
             D ELD FM  Y  +L  ++E+L + ++  AM+ +
Sbjct:   184 DKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAV 217

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA;NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0048513 "organ development" evidence=RCA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2116632 KNAT5 "KNOTTED1-like homeobox gene 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 9.4e-07, P = 9.4e-07
 Identities = 32/114 (28%), Positives = 53/114 (46%)

Query:     3 GNESSETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNS 62
             G E   + + KA I+ HP Y  LL A+V C +V  P + + R+ A   +  +   +  ++
Sbjct:   109 GGEDWRSASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHT-VAAKYST 167

Query:    63 RDSTNKDPELDQFMEAYYDMLVKYREELTRPI----QEAMDFIRRIETQLNMLS 112
                   + ELD FM  Y  +L  ++E+L   +     EA+     IE  L  L+
Sbjct:   168 LGVVVDNKELDHFMSHYVVLLCSFKEQLQHHVCVHAMEAITACWEIEQSLQSLT 221

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009727 "detection of ethylene stimulus" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IDA

GO:0048513 "organ development" evidence=RCA

TAIR|locus:2015554 KNAT7 "KNOTTED-like homeobox of Arabidopsis thaliana 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 31/112 (27%), Positives = 56/112 (50%)

Query:     6 SSETEAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFESRQRSSLNSRDS 65
             + +   +K +I +HP Y  LL A+V C +V  P + +  + A   +     RS  ++   
Sbjct:    23 AEQNRQLKGEIATHPMYEQLLAAHVACLRVATPIDQLPIIEAQLSQSHHLLRSYASTAVG 82

Query:    66 TNKDP-ELDQFMEAYYDMLVKYREELTRPIQ----EAMDFIRRIETQLNMLS 112
              + D  ELD F+  Y  +L  ++E+L + ++    EA+   R IE  L+ L+
Sbjct:    83 YHHDRHELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLT 134


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.128   0.345    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      124       124   0.00091  102 3  11 23  0.42    31
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  532 (57 KB)
  Total size of DFA:  109 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.15u 0.21s 15.36t   Elapsed:  00:00:01
  Total cpu time:  15.15u 0.21s 15.36t   Elapsed:  00:00:01
  Start:  Sat May 11 00:16:22 2013   End:  Sat May 11 00:16:23 2013

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010089 "xylem development" evidence=RCA;IMP

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048513 "organ development" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P46609	KNOS6_ORYSJ	No assigned EC number	0.7142	0.8387	0.2880	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015017001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (370 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	124
pfam03790	45	pfam03790, KNOX1, KNOX1 domain	2e-24
pfam03791	52	pfam03791, KNOX2, KNOX2 domain	2e-24

>gnl|CDD|112596 pfam03790, KNOX1, KNOX1 domain

 Score = 87.7 bits (218), Expect = 2e-24
 Identities = 31/44 (70%), Positives = 34/44 (77%)

Query: 10 EAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFE 53
          EAIKAKI SHP Y  LL AY+DCQKVGAPPEV ARL   R+E +
Sbjct: 1  EAIKAKIASHPLYPRLLAAYIDCQKVGAPPEVAARLEEIRRENQ 44

The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerisation. Length = 45

>gnl|CDD|112597 pfam03791, KNOX2, KNOX2 domain

 Score = 87.7 bits (218), Expect = 2e-24
 Identities = 31/45 (68%), Positives = 35/45 (77%)

Query: 69  DPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSN 113
           DPELDQFMEAY D+LVKY+EEL+RP  EAM F+  IETQL  L  
Sbjct: 8   DPELDQFMEAYCDVLVKYKEELSRPFDEAMTFLNEIETQLQNLCG 52

The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerisation. Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
PF03791	52	KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEIN	99.96
PF03790	45	KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEIN	99.92
KOG0773	342	consensus Transcription factor MEIS1 and related H	98.32
PF13097	175	CENP-U: CENP-A nucleosome associated complex (NAC)	84.15
PF03792	191	PBC: PBC domain; InterPro: IPR005542 Pbx proteins	81.78

>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2

Probab=99.96  E-value=5.4e-30  Score=164.03  Aligned_cols=49  Identities=69%  Similarity=1.050  Sum_probs=47.4

Q ss_pred             CCCCCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhC
Q 037135           65 STNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSN  113 (124)
Q Consensus        65 ~~~~dpELDqFMeaYc~~L~kykeeL~~p~~EA~~f~~~iE~QL~~L~~  113 (124)
                      .+|.||||||||++||.||+||||||+|||+||++|||+||+||++|||
T Consensus         4 ~~~~dpELDqFMeaYc~~L~kykeeL~~p~~EA~~f~~~ie~qL~~Lt~   52 (52)
T PF03791_consen    4 SIGADPELDQFMEAYCDMLVKYKEELQRPFQEAMEFCREIEQQLSSLTG   52 (52)
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3689999999999999999999999999999999999999999999997

KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus

>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2

Probab=99.92  E-value=7.4e-26  Score=141.09  Aligned_cols=44  Identities=70%  Similarity=1.027  Sum_probs=41.2

Q ss_pred             HHHHHHHhhCCCcHHHHHHHHhhhhcCCchhHHHHHHHHHHHHH
Q 037135           10 EAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFE   53 (124)
Q Consensus        10 ~~iKa~I~sHPlYp~LL~A~i~C~KVGaP~e~~~~L~~~~~~~~   53 (124)
                      +.|||+|++||+||+||+|||+|+|||||||++++||++.++++
T Consensus         1 e~iKA~I~~HP~Y~~Ll~Ayi~C~KVGAP~e~~~~L~e~~~~~~   44 (45)
T PF03790_consen    1 EAIKAKIASHPLYPRLLAAYIDCQKVGAPPEVVARLDEILAESQ   44 (45)
T ss_pred             ChHHHHHHcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            46999999999999999999999999999999999999988753

KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus

>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]

Probab=98.32  E-value=1.3e-07  Score=78.01  Aligned_cols=106  Identities=18%  Similarity=0.163  Sum_probs=82.7

Q ss_pred             HHHHHHHhhCCCcHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHH--hhhcccC---C-CCCCCCCCchhhHHHHHHHHH
Q 037135           10 EAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAAARQEFES--RQRSSLN---S-RDSTNKDPELDQFMEAYYDML   83 (124)
Q Consensus        10 ~~iKa~I~sHPlYp~LL~A~i~C~KVGaP~e~~~~L~~~~~~~~~--~~~~~~~---~-~~~~~~dpELDqFMeaYc~~L   83 (124)
                      ..+|..+.+||+|..++.+|++|++++.|.+.+.+.+........  ..+...+   . .-..+.+++++.||..|+.+|
T Consensus        50 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~s~~~~~~~~~~~~~~~~~k~~~~l  129 (342)
T KOG0773|consen   50 ASSKYLTAAQELLDEFCSAGLDCLKGKMPYDPVPRSPASLSPPEDKGARRGNATRESATLKAWLEEHRLNPYPSKLEKIL  129 (342)
T ss_pred             ccccccccchhHHhHHhhccccccccccCcCccccccccccCccccccccccccccccccccchhhhhhccCchHHHHHH
Confidence            347899999999999999999999999999998886554332111  0010000   0 002357899999999999999


Q ss_pred             HHHHHHhhhhH--HHHHHHHHHHHHHHHHhhCCC
Q 037135           84 VKYREELTRPI--QEAMDFIRRIETQLNMLSNGP  115 (124)
Q Consensus        84 ~kykeeL~~p~--~EA~~f~~~iE~QL~~L~~~~  115 (124)
                      ..++..|+..+  ++++.+.++++..+...++.+
T Consensus       130 l~~~~~~~~~~~~~~~~~a~r~~~~~~~~~~~~~  163 (342)
T KOG0773|consen  130 LAVITKLTLTQVSTWFANARRRLKKELKMTWGPT  163 (342)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhccCCCCCCc
Confidence            99999999999  699999999999999988653

>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit

Probab=84.15  E-value=3.4  Score=32.51  Aligned_cols=45  Identities=24%  Similarity=0.468  Sum_probs=39.1

Q ss_pred             CC-CchhhHHHHHHHHHHHHHHHhhhhH-HHHH-HHHHHHHHHHHHhh
Q 037135           68 KD-PELDQFMEAYYDMLVKYREELTRPI-QEAM-DFIRRIETQLNMLS  112 (124)
Q Consensus        68 ~d-pELDqFMeaYc~~L~kykeeL~~p~-~EA~-~f~~~iE~QL~~L~  112 (124)
                      .| -|||-...++-.++..||+.++-.+ ++|+ .|+..+..||-.+-
T Consensus       101 SDItELDVvL~~FEk~~~eYkq~ieS~~cr~AI~~F~~~~keqL~~~i  148 (175)
T PF13097_consen  101 SDITELDVVLSAFEKTALEYKQSIESKICRKAINKFYSNFKEQLIEMI  148 (175)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            35 5999999999999999999998877 6777 78999999987764

>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins

Probab=81.78  E-value=6.4  Score=31.39  Aligned_cols=43  Identities=23%  Similarity=0.334  Sum_probs=32.2

Q ss_pred             hhhHHHHHHHHhhCCCcHHHHHHHHhhh-hcCC---------chh-HHHHHHHH
Q 037135            6 SSETEAIKAKIISHPQYSSLLEAYVDCQ-KVGA---------PPE-VVARLAAA   48 (124)
Q Consensus         6 ~~e~~~iKa~I~sHPlYp~LL~A~i~C~-KVGa---------P~e-~~~~L~~~   48 (124)
                      -++....|-.|-+||+||.|-+..++-. |++-         ||| ++.|||-+
T Consensus        23 LDeaqa~K~~l~~hr~k~ALfsVLcE~KEkt~LSir~~qee~p~dpQl~RLDNM   76 (191)
T PF03792_consen   23 LDEAQARKHALNCHRMKPALFSVLCEIKEKTVLSIRNIQEEDPPDPQLMRLDNM   76 (191)
T ss_pred             HhHHHHhchhhcCCCCchhhHHHHHHHHhhcCccccccCCcCCCchhhhhhhcc
Confidence            3456789999999999999999987765 3221         444 77888865

Examination of Pbx1 has shown that, in addition to the homeodomain, a short 16-residue C-terminal tail is essential for maximal cooperative interactions with Hox partners as well as for maximal monomeric binding of Pbx1 to DNA. The PBX domain is a bipartite acidic domain [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005634 nucleus

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	124
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.1 bits (85), Expect = 7e-04
 Identities = 13/95 (13%), Positives = 32/95 (33%), Gaps = 20/95 (21%)

Query: 18  SHPQYSSLLEAYVDCQKVGAPPE-------VVARLAAARQEFESR----QRSSLNSRDST 66
           +  +  SLL  Y+DC+    P E        ++ +A + ++  +     +  + +   + 
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 67  NK------DPELDQFMEAYYDMLVKYREELTRPIQ 95
            +      +P         +D L  +      P  
Sbjct: 359 IESSLNVLEPAE---YRKMFDRLSVFPPSAHIPTI 390

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	124
d2f66c1	65	Vacuolar protein sorting-associated protein 37, VP	89.15

>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Endosomal sorting complex assembly domain
family: VPS37 C-terminal domain-like
domain: Vacuolar protein sorting-associated protein 37, VPS37 (SRN2)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.15  E-value=0.17  Score=31.28  Aligned_cols=23  Identities=30%  Similarity=0.668  Sum_probs=19.4

Q ss_pred             CCCCchhhHHHHHHHHHHHHHHH
Q 037135           67 NKDPELDQFMEAYYDMLVKYREE   89 (124)
Q Consensus        67 ~~dpELDqFMeaYc~~L~kykee   89 (124)
                      ..+.|||+|.+.|.++=+.|+-.
T Consensus        35 ~~s~elD~Fi~qYl~~RTeYH~r   57 (65)
T d2f66c1          35 DSADDLDQFIKNYLDIRTQYHLR   57 (65)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHH
Confidence            34569999999999999999744