Citrus Sinensis ID: 037148

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460---
MTDLHACYECGKAPKFYCLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVLLIEENKDVDSHGCKIDFSDPENSYFYEYWQIIKDKERLTSEQVISAYNRLKSGELYSGASDSFESDEGKDDSDESEDDSQIRKRKRSKGKVSVANSKVKSSRKEFVGWGSRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICDARLKALFGRKSVNKNSIPKLLTIHLAENLELLEEEFGSCSEIEVEEDLEACKRQSNSVKRSYTKEVVGDAQKNSHTKEVVMNVQESCFASVVPKNIKLVYLRKSLVEELSKQLETFEAKVMGSFVRVRSDPNDYLQKNSHQLVQVSGIHKTSVNAEILLELSDRVKWVPICNLSNDDFSEEECEDLRQRVKNGLASRPTVVELRQKAVCLHEDITKHWIARELDILRKCVDRANEKGWRRQYPSFSGHTKLD
ccccEEcccccccccEEEEccccccccccccccEEEEEEccccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccHHHccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHccEEEEEEccccccccccEEEEEEEEEEcccccccEEEEEcccccEEEEEEcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
ccccEEEEcccccccEEEEEccHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccEEEEcHHHHHHHccccccHHHHHHHHHHHHccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEHHHcHHHHHHHHHHHHHHccccHHHHEEEEEEEEEEEccccccccccEEEEEEEEEccccccccEEEEEEccccEEEEcEEccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEcc
mtdlhacyecgkapkfyclcspkaicghcicdaefaivkgnkglcsGCLELVLLIEEnkdvdshgckidfsdpensyFYEYWQIIKDKERLTSEQVISAYNRLksgelysgasdsfesdegkddsdeseddsQIRKrkrskgkvsvanskvkssrkefvgwgsrpLLEFLASIGkdttrelsDDAITTIISGYckenklfhperkRKIICDARLKALFgrksvnknsipKLLTIHLAENLELLeeefgscseievEEDLEACKRqsnsvkrsytkevvgdaqknshtKEVVMNVQEScfasvvpkniKLVYLRKSLVEELSKQLETFEAKVMGSFvrvrsdpndylqknshqLVQVSGIHKTSVNAEILLELSdrvkwvpicnlsnddfseEECEDLRQRVKnglasrptVVELRQKAVCLHEDITKHWIARELDILRKCVDRanekgwrrqypsfsghtkld
MTDLHACYECGKAPKFYCLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVLLIEENkdvdshgckidfsdpensYFYEYWQIIKDKERLTSEQVISAYNrlksgelysgasdsfesdegkddsdeseddsqirkrkrskgkvsvanskvkssrkefvgwgsrplLEFLASIgkdttrelsDDAITTIISgyckenklfhperkRKIICDARLKAlfgrksvnknsipKLLTIHLAENLELLEEEFGSCSEIEVEEDLEACkrqsnsvkrsytkevvgdaqknshtkEVVMNVQEScfasvvpknIKLVYLRKSLVEELSKQLETFEAKVMGSFVRVRSDPNDYLQKNSHQLVQVSGIHKTSVNAEILLELSDRVKWVPICNLSNDDFSEEECEDLRQRvknglasrptvvELRQKAVCLHEDITKHWIARELDILRKCVDranekgwrrqypsfsghtkld
MTDLHACYECGKAPKFYCLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVLLIEENKDVDSHGCKIDFSDPENSYFYEYWQIIKDKERLTSEQVISAYNRLKSGELYSGAsdsfesdegkddsdeseddsQIrkrkrskgkvsvanskvkssrkEFVGWGSRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICDARLKALFGRKSVNKNSIPKLLTIHlaenlelleeeFGSCSEIEVEEDLEACKRQSNSVKRSYTKEVVGDAQKNSHTKEVVMNVQESCFASVVPKNIKLVYLRKSLVEELSKQLETFEAKVMGSFVRVRSDPNDYLQKNSHQLVQVSGIHKTSVNAEILLELSDRVKWVPICNLSNDDFSEEECEDLRQRVKNGLASRPTVVELRQKAVCLHEDITKHWIARELDILRKCVDRANEKGWRRQYPSFSGHTKLD
***LHACYECGKAPKFYCLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVLLIEENKDVDSHGCKIDFSDPENSYFYEYWQIIKDKERLTSEQVISAYN********************************************************FVGWGSRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICDARLKALFGRKSVNKNSIPKLLTIHLAENLELLEEEFGSCSEIE**********************************EVVMNVQESCFASVVPKNIKLVYLRKSLVEELSKQLETFEAKVMGSFVRVRSDPNDYLQKNSHQLVQVSGIHKTSVNAEILLELSDRVKWVPICNLSNDDF**********RVKNGLASRPTVVELRQKAVCLHEDITKHWIARELDILRKCVDRANEKGW**************
MTDLHACYECGKAPKFYCLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVLLIEENKDVDSHGCKIDFSDPENSYFYEYWQIIKDKERLTS***********************************************************************PLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICDARLKALFGRKSVNKNSIPKLLTIHLAENLEL**********************************************************SVVPKNIKLVYLRKSLVEELSKQLETFEAKVMGSFVRVRSDPNDYLQKNSHQLVQVSGIHKTSVNAEILLELSDRVKWVPICNLSNDDFSEEECEDLRQRVKNGLASRPTVVELRQKAVCLHEDITKHWIARELDILRK**********RRQYPSFSGHT*L*
MTDLHACYECGKAPKFYCLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVLLIEENKDVDSHGCKIDFSDPENSYFYEYWQIIKDKERLTSEQVISAYNRLKSGELYSGA*********************************************FVGWGSRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICDARLKALFGRKSVNKNSIPKLLTIHLAENLELLEEEFGSCSEIEVEEDLEACKRQSNSVKRSYTKEVVGDAQKNSHTKEVVMNVQESCFASVVPKNIKLVYLRKSLVEELSKQLETFEAKVMGSFVRVRSDPNDYLQKNSHQLVQVSGIHKTSVNAEILLELSDRVKWVPICNLSNDDFSEEECEDLRQRVKNGLASRPTVVELRQKAVCLHEDITKHWIARELDILRKCVDRANEKGWRRQYPS********
MTDLHACYECGKAPKFYCLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVLLIEENKDVDSHGCKIDFSDPENSYFYEYWQIIKDKERLTSEQVISAYNR*********************************************************GWGSRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICDARLKALFGRKSVNKNSIPKLLTIHLAEN*******************************************************QESCFASVVPKNIKLVYLRKSLVEELSKQLETFEAKVMGSFVRVRSDPNDYLQKNSHQLVQVSGIHKTSVNAEILLELSDRVKWVPICNLSNDDFSEEECEDLRQRVKNGLASRPTVVELRQKAVCLHEDITKHWIARELDILRKCVDRANEKGWRRQYPSFSGH*KL*
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MTDLHACYECGKAPKFYCLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVLLIEENKDVDSHGCKIDFSDPENSYFYEYWQIIKDKERLTSEQVISAYNRLKSGELYSGASDSFESDEGKDDSDESEDDSQIRKRKRSKGKVSVANSKVKSSRKEFVGWGSRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICDARLKALFGRKSVNKNSIPKLLTIHLAENLELLEEEFGSCSEIEVEEDLEACKRQSNSVKRSYTKEVVGDAQKNSHTKEVVMNVQESCFASVVPKNIKLVYLRKSLVEELSKQLETFEAKVMGSFVRVRSDPNDYLQKNSHQLVQVSGIHKTSVNAEILLELSDRVKWVPICNLSNDDFSEEECEDLRQRVKNGLASRPTVVELRQKAVCLHEDITKHWIARELDILRKCVDRANEKGWRRQYPSFSGHTKLD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query463 2.2.26 [Sep-21-2011]
Q9FT92 553 Uncharacterized protein A no no 0.615 0.515 0.436 5e-69
Q9SIV5 1773 Zinc finger CCCH domain-c no no 0.954 0.249 0.299 1e-44
Q9SD34 1292 Zinc finger CCCH domain-c no no 0.913 0.327 0.264 8e-36
Q05024226 Protein TRI1 OS=Saccharom yes no 0.185 0.380 0.357 0.0002
>sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430 OS=Arabidopsis thaliana GN=At5g08430 PE=1 SV=2 Back     alignment and function desciption
 Score =  262 bits (669), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 134/307 (43%), Positives = 196/307 (63%), Gaps = 22/307 (7%)

Query: 150 KVKSSRKEFVGWGSRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKII 209
           K +  R EFVGWGSR L+EFL S+GKDT+  +S   ++  I+ Y  +  L  P  K+K++
Sbjct: 21  KARPKRFEFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVV 80

Query: 210 CDARLKALFGRKSVNKNSIPKLLTIHLAENLELLEEEFGSCSEIEVEEDLEACKRQSNSV 269
           CD RL  LFG +++ +  +  LL  H  EN +  + +F    E E               
Sbjct: 81  CDKRLVLLFGTRTIFRMKVYDLLEKHYKENQD--DSDFDFLYEDE--------------- 123

Query: 270 KRSYTKEVVGDAQKNSHTKEVVMNVQESCFASVVPKNIKLVYLRKSLVEELSKQLETFEA 329
                 +++  ++K +     V+      FA++V  NIKL+YLRKSLV+EL K  +TFE 
Sbjct: 124 -----PQIICHSEKIAKRTSKVVKKPRGTFAAIVSDNIKLLYLRKSLVQELLKSPDTFEG 178

Query: 330 KVMGSFVRVRSDPNDYLQKNSHQLVQVSGIHKTSVNAEILLELSDRVKWVPICNLSNDDF 389
           K++GSFVR++SDPNDYLQK  +QLVQV+G+ K     + LL++++ VK V I  LS+D+F
Sbjct: 179 KMLGSFVRIKSDPNDYLQKYPYQLVQVTGVKKEHGTDDFLLQVTNYVKDVSISVLSDDNF 238

Query: 390 SEEECEDLRQRVKNGLASRPTVVELRQKAVCLHEDITKHWIARELDILRKCVDRANEKGW 449
           S+EECEDL QR+KNGL  +PT+VE+ +KA  LH+D TKHW+ RE+++L++ +DRANEKGW
Sbjct: 239 SQEECEDLHQRIKNGLLKKPTIVEMEEKAKKLHKDQTKHWLGREIELLKRLIDRANEKGW 298

Query: 450 RRQYPSF 456
           RR+   +
Sbjct: 299 RRELSEY 305

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=NERD PE=1 SV=3 Back     alignment and function description
>sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g51120 PE=2 SV=3 Back     alignment and function description
>sp|Q05024|TRI1_YEAST Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
356537823520 PREDICTED: uncharacterized protein At5g0 0.948 0.844 0.505 1e-121
224116464 603 predicted protein [Populus trichocarpa] 0.948 0.728 0.493 1e-115
297739485 819 unnamed protein product [Vitis vinifera] 0.928 0.525 0.495 1e-112
449431880 746 PREDICTED: zinc finger CCCH domain-conta 0.943 0.585 0.461 1e-111
357460665 964 Zinc finger CCCH domain-containing prote 0.946 0.454 0.448 1e-108
357460663 814 Zinc finger CCCH domain-containing prote 0.928 0.528 0.461 1e-106
357460667 814 hypothetical protein MTR_3g064280 [Medic 0.933 0.530 0.456 1e-103
255575932517 conserved hypothetical protein [Ricinus 0.883 0.791 0.485 1e-101
359486219 785 PREDICTED: uncharacterized protein At5g0 0.790 0.466 0.482 1e-87
449520998471 PREDICTED: zinc finger CCCH domain-conta 0.803 0.789 0.429 8e-84
>gi|356537823|ref|XP_003537424.1| PREDICTED: uncharacterized protein At5g08430-like [Glycine max] Back     alignment and taxonomy information
 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/477 (50%), Positives = 318/477 (66%), Gaps = 38/477 (7%)

Query: 3   DLHACYECGKAPKFYCLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVLLIEENKDVD 62
           D H+C  C K  KF C C PKA+CG C  DAEFAIVKGNKG C+ C +L  LIEEN DVD
Sbjct: 59  DSHSCSLCRKPSKFKCFCCPKAVCGKCFSDAEFAIVKGNKGFCTHCSKLAFLIEENADVD 118

Query: 63  SHGCKIDFSDPEN--SYFYEYWQIIKDKERLTSEQVISAYNRLKSGELYSGASDSFESDE 120
           S G K+DF D +     F EY++IIK +E L S+    A+  LK+G+      D  E  E
Sbjct: 119 SDGEKVDFKDRDTYECLFSEYYEIIKKEEGLNSQHAYQAHKFLKNGKNKCDL-DPDEIGE 177

Query: 121 GKDDSDESED----------------DSQIRKRKRSKGKVSVANSKVKSSRKEFVGWGSR 164
           G+DD+ +SED                 S+  ++K+  GK+     KVK  +KEF+GWGSR
Sbjct: 178 GEDDTGDSEDVSNFIVSDCDDLNDTAGSKSARKKKGMGKLKSMKGKVKD-KKEFIGWGSR 236

Query: 165 PLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICDARLKALFGRKSVN 224
            L+EFL  IGKDT++E S+  +T+II  YC+EN LF P++KRKI+CD +L++L GRKSVN
Sbjct: 237 MLIEFLKYIGKDTSKEFSEHDVTSIIIEYCRENNLFDPKKKRKILCDEQLRSLIGRKSVN 296

Query: 225 KNSIPKLLTIHLAENLELLEEEFGSCSEIEVEEDLE-ACKRQSNSVKRSYTKEVVGDAQK 283
           KNSI  LL  H AEN E +++   S  + +  E +  + KR+S S   S    +V + + 
Sbjct: 297 KNSIQNLLAPHFAENSEEMDDISSSSEDRDCNEPVNFSRKRKSISCTESQHPNLVSEER- 355

Query: 284 NSHTKEVVMNVQESCFASVVPKNIKLVYLRKSLVEELSKQLETFEAKVMGSFVRVRSDPN 343
                       +SCFA++V  N+KLVYL++SLV+ELSKQ ETF+ KV+GS+VRV+SDP 
Sbjct: 356 ------------QSCFAAIVSSNLKLVYLKRSLVDELSKQPETFDGKVLGSYVRVKSDPY 403

Query: 344 DYLQKNSHQLVQVSGIHKT----SVNAEILLELSDRVKWVPICNLSNDDFSEEECEDLRQ 399
           DYLQKNSH LVQV GI+++     +N EI+L+LS+  K VPIC +S+ DFSEEEC+DL Q
Sbjct: 404 DYLQKNSHLLVQVVGINRSLNNGEINKEIMLQLSNVPKAVPICKISDVDFSEEECQDLYQ 463

Query: 400 RVKNGLASRPTVVELRQKAVCLHEDITKHWIARELDILRKCVDRANEKGWRRQYPSF 456
           R++NGL  +PTV+EL QKA  LHEDI KHWI R+L +L+  +D+ANEKGWRRQYPSF
Sbjct: 464 RMRNGLLKQPTVLELEQKARTLHEDIMKHWIPRKLVLLQNLIDQANEKGWRRQYPSF 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224116464|ref|XP_002317307.1| predicted protein [Populus trichocarpa] gi|222860372|gb|EEE97919.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297739485|emb|CBI29667.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449431880|ref|XP_004133728.1| PREDICTED: zinc finger CCCH domain-containing protein 19-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357460665|ref|XP_003600614.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|355489662|gb|AES70865.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357460663|ref|XP_003600613.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|355489661|gb|AES70864.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357460667|ref|XP_003600615.1| hypothetical protein MTR_3g064280 [Medicago truncatula] gi|355489663|gb|AES70866.1| hypothetical protein MTR_3g064280 [Medicago truncatula] Back     alignment and taxonomy information
>gi|255575932|ref|XP_002528863.1| conserved hypothetical protein [Ricinus communis] gi|223531714|gb|EEF33537.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359486219|ref|XP_003633415.1| PREDICTED: uncharacterized protein At5g08430-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449520998|ref|XP_004167519.1| PREDICTED: zinc finger CCCH domain-containing protein 19-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
TAIR|locus:2150828 553 AT5G08430 [Arabidopsis thalian 0.390 0.327 0.513 3.3e-65
TAIR|locus:2827287 1773 NERD "Needed for RDR2-independ 0.956 0.249 0.283 2.2e-42
TAIR|locus:2080863 1292 AT3G51120 [Arabidopsis thalian 0.596 0.213 0.275 9e-33
TAIR|locus:2154473 570 AT5G23480 [Arabidopsis thalian 0.323 0.263 0.420 6.5e-22
TAIR|locus:2060949 824 AT2G18090 "AT2G18090" [Arabido 0.218 0.122 0.300 1.4e-15
TAIR|locus:505006294109 AT2G35605 "AT2G35605" [Arabido 0.144 0.614 0.391 0.00025
TAIR|locus:2028671112 AT1G31760 "AT1G31760" [Arabido 0.153 0.633 0.351 0.00053
TAIR|locus:2150828 AT5G08430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 504 (182.5 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
 Identities = 93/181 (51%), Positives = 135/181 (74%)

Query:   276 EVVGDAQKNSHTKEVVMNVQESCFASVVPKNIKLVYLRKSLVEELSKQLETFEAKVMGSF 335
             +++  ++K +     V+      FA++V  NIKL+YLRKSLV+EL K  +TFE K++GSF
Sbjct:   125 QIICHSEKIAKRTSKVVKKPRGTFAAIVSDNIKLLYLRKSLVQELLKSPDTFEGKMLGSF 184

Query:   336 VRVRSDPNDYLQKNSHQLVQVSGIHKTSVNAEILLELSDRVKWVPICNLSNDDFSEEECE 395
             VR++SDPNDYLQK  +QLVQV+G+ K     + LL++++ VK V I  LS+D+FS+EECE
Sbjct:   185 VRIKSDPNDYLQKYPYQLVQVTGVKKEHGTDDFLLQVTNYVKDVSISVLSDDNFSQEECE 244

Query:   396 DLRQRVKNGLASRPTVVELRQKAVCLHEDITKHWIARELDILRKCVDRANEKGWRRQYPS 455
             DL QR+KNGL  +PT+VE+ +KA  LH+D TKHW+ RE+++L++ +DRANEKGWRR+   
Sbjct:   245 DLHQRIKNGLLKKPTIVEMEEKAKKLHKDQTKHWLGREIELLKRLIDRANEKGWRRELSE 304

Query:   456 F 456
             +
Sbjct:   305 Y 305
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA
GO:0016570 "histone modification" evidence=IEA
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0009086 "methionine biosynthetic process" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0010050 "vegetative phase change" evidence=RCA
GO:0048573 "photoperiodism, flowering" evidence=RCA
TAIR|locus:2827287 NERD "Needed for RDR2-independent DNA methylation" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080863 AT3G51120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154473 AT5G23480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2060949 AT2G18090 "AT2G18090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006294 AT2G35605 "AT2G35605" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028671 AT1G31760 "AT1G31760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00110483
hypothetical protein (603 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
smart00719109 smart00719, Plus3, Short conserved domain in trans 6e-22
pfam03126105 pfam03126, Plus-3, Plus-3 domain 5e-19
pfam0220176 pfam02201, SWIB, SWIB/MDM2 domain 9e-11
smart0015177 smart00151, SWIB, SWI complex, BAF60b domains 4e-07
PRK06319860 PRK06319, PRK06319, DNA topoisomerase I/SWI domain 6e-07
COG5531237 COG5531, COG5531, SWIB-domain-containing proteins 3e-04
>gnl|CDD|197843 smart00719, Plus3, Short conserved domain in transcriptional regulators Back     alignment and domain information 
 Score = 90.1 bits (224), Expect = 6e-22
 Identities = 47/111 (42%), Positives = 67/111 (60%), Gaps = 11/111 (9%)

Query: 301 SVVPKNIKLVYLRKSLVEELSKQLETFEAKVMGSFVRVRSDPNDYLQKNSHQLVQVSGIH 360
           ++V  N+ L+ LR+SLVEEL K   TFE+KV+G FVRV+  PND  Q   ++LVQV+G+ 
Sbjct: 1   AIVFDNLNLLRLRRSLVEELLK-PPTFESKVVGCFVRVKIGPNDQKQ-PIYRLVQVTGVK 58

Query: 361 KTSVNAE-------ILLEL--SDRVKWVPICNLSNDDFSEEECEDLRQRVK 402
           +             +LLE+   D  K V I  +SN DF+EEE +  +Q +K
Sbjct: 59  EADKPYSLGGKTTNVLLEVLNGDSEKVVQINFISNQDFTEEEFQRWKQAIK 109

Plus3 domains occur in the Saccharomyces cerevisiae Rtf1p protein, which interacts with Spt6p, and in parsley CIP, which interacts with the bZIP protein CPRF1. Length = 109
>gnl|CDD|190531 pfam03126, Plus-3, Plus-3 domain Back     alignment and domain information
>gnl|CDD|145386 pfam02201, SWIB, SWIB/MDM2 domain Back     alignment and domain information
>gnl|CDD|128456 smart00151, SWIB, SWI complex, BAF60b domains Back     alignment and domain information
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated Back     alignment and domain information
>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 463
KOG1946240 consensus RNA polymerase I transcription factor UA 99.97
smart00719109 Plus3 Short conserved domain in transcriptional re 99.95
KOG2570420 consensus SWI/SNF transcription activation complex 99.92
PF03126108 Plus-3: Plus-3 domain; InterPro: IPR004343 The yea 99.92
KOG2402 525 consensus Paf1/RNA polymerase II complex, RTF1 com 99.91
smart0015177 SWIB SWI complex, BAF60b domains. 99.82
PF0220176 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SW 99.82
COG5296 521 Transcription factor involved in TATA site selecti 99.77
COG5531237 SWIB-domain-containing proteins implicated in chro 99.68
PRK14724987 DNA topoisomerase III; Provisional 99.63
PRK06319860 DNA topoisomerase I/SWI domain fusion protein; Val 99.08
PF0056946 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc 86.92
cd0233945 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre 84.51
smart0029144 ZnF_ZZ Zinc-binding domain, present in Dystrophin, 84.42
smart0006468 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 84.12
cd0224946 ZZ Zinc finger, ZZ type. Zinc finger present in dy 80.36
>KOG1946 consensus RNA polymerase I transcription factor UAF [Transcription] Back     alignment and domain information 
Probab=99.97  E-value=4.4e-31  Score=257.38  Aligned_cols=169  Identities=30%  Similarity=0.423  Sum_probs=113.9

Q ss_pred             cchHHHHHHHhhhccCCChHHHHHhhhcccCCCCCCCCCCCcC-CCCCCCCCCCCCcchhhhh---hccccCCccccccc
Q 037148           75 NSYFYEYWQIIKDKERLTSEQVISAYNRLKSGELYSGASDSFE-SDEGKDDSDESEDDSQIRK---RKRSKGKVSVANSK  150 (463)
Q Consensus        75 e~lFk~Yw~~lK~k~~lt~~~l~~A~~~~~~~~~~~~~~~~~~-~~~~~dd~~~~~~~s~~k~---rk~~~~k~~~~~~k  150 (463)
                      +|+|++||+.+++.++||.++|.+|.++|.+....+.....-. .++..+...+....+..++   ++..+.........
T Consensus         7 ~~~~~~~~l~~~~~~~lt~~~vr~~~~~~~~v~~~~~k~~~~~~~~~~~~~~~~~~~k~~~~k~~~~~~~~~~~~~~~~~   86 (240)
T KOG1946|consen    7 EYLFKDYILSLKDQETLTPDDVRRAMAPRSGVDGTAQKSLLAKAIDESSDEDSALPVKGSKKKKRGSKTRSRKPKSLESS   86 (240)
T ss_pred             hhhhhHHHhcccccccCCHHHHHHHhccccCCCCcchhhhhhhhhhcccccccccccccccccccccccccccCcccccc
Confidence            9999999999999999999999999999998777555532211 1111111111111111111   00111111111111


Q ss_pred             c-cccccccccCCCHHHHHHHHhcCCCC-CcccCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHhhhhCCCcccccch
Q 037148          151 V-KSSRKEFVGWGSRPLLEFLASIGKDT-TRELSDDAITTIISGYCKENKLFHPERKRKIICDARLKALFGRKSVNKNSI  228 (463)
Q Consensus       151 ~-~~k~~~~~gw~S~eLa~fL~~~G~~t-~~~~sR~~Vv~~lW~YIK~nnLQDP~~Kr~I~CD~kL~~LFg~~rv~~~ei  228 (463)
                      . +..+..-++|++..|..|+.+|+..+ ++++||++|++.||+|||+||||||.||+.|+||++|+.|||.++|+||+|
T Consensus        87 ~~~~~~~~~~~~g~~kl~~ls~~L~~~~G~~~lsR~~vvk~iw~YIke~nLqDP~nkr~IlCDekL~~iF~~k~v~~fem  166 (240)
T KOG1946|consen   87 GEKNKKKKKASWGSTKLIPLSPSLARFVGTSELSRTDVVKKIWAYIKEHNLQDPKNKREILCDEKLKSIFGKKRVGMFEM  166 (240)
T ss_pred             cccchhccccCcCcccccccCHHHHhhcccccccHHHHHHHHHHHHHHhccCCccccCeeeeHHHHHHHhccCccceeeH
Confidence            1 11111226686444433333333333 588999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCccccc
Q 037148          229 PKLLTIHLAENLELL  243 (463)
Q Consensus       229 ~klL~~Hl~~~~~~s  243 (463)
                      ++||.+||.++.+.+
T Consensus       167 ~KLL~~H~~~~~d~~  181 (240)
T KOG1946|consen  167 LKLLTKHFLKNQDMV  181 (240)
T ss_pred             HHHHHHhccCccccc
Confidence            999999999988753

>smart00719 Plus3 Short conserved domain in transcriptional regulators Back     alignment and domain information
>KOG2570 consensus SWI/SNF transcription activation complex subunit [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF03126 Plus-3: Plus-3 domain; InterPro: IPR004343 The yeast Paf1 complex consists of Pfa1, Rtf1, Cdc73, Ctr9, and Leo1 Back     alignment and domain information
>KOG2402 consensus Paf1/RNA polymerase II complex, RTF1 component (involved in regulation of TATA box-binding protein) [Transcription] Back     alignment and domain information
>smart00151 SWIB SWI complex, BAF60b domains Back     alignment and domain information
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation [] Back     alignment and domain information
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription] Back     alignment and domain information
>COG5531 SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics] Back     alignment and domain information
>PRK14724 DNA topoisomerase III; Provisional Back     alignment and domain information
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated Back     alignment and domain information
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type Back     alignment and domain information
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein Back     alignment and domain information
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 Back     alignment and domain information
>cd02249 ZZ Zinc finger, ZZ type Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
1v32_A101 Solution Structure Of The SwibMDM2 DOMAIN OF THE Hy 2e-13
>pdb|1V32|A Chain A, Solution Structure Of The SwibMDM2 DOMAIN OF THE Hypothetical Protein At5g08430 From Arabidopsis Thaliana Length = 101 Back     alignment and structure 
Iteration: 1

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 50/79 (63%)
Query: 157 EFVGWGSRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICDARLKA 216
           EFVGWGSR L+EFL S+GKDT+  +S   ++  I+ Y  +  L  P  K+K++CD RL  
Sbjct: 11  EFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVL 70
Query: 217 LFGRKSVNKNSIPKLLTIH 235
           LFG +++ +  +  LL  H
Sbjct: 71  LFGTRTIFRMKVYDLLEKH 89
  Database: pdbaa

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
1v32_A101 AT5G08430, hypothetical protein RAFL09-47-K03; SWI 3e-29
3u1u_A137 RNA polymerase-associated protein RTF1 homolog; pl 2e-20
2bze_A153 KIAA0252 protein; human RTF1 PLUS3 domain, transcr 3e-20
1v31_A93 Hypothetical protein RAFL11-05-P19; SWI/SNF comple 8e-14
1uhr_A93 SWI/SNF related, matrix associated, actin dependen 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Length = 101 Back     alignment and structure
 Score =  109 bits (274), Expect = 3e-29
 Identities = 38/95 (40%), Positives = 56/95 (58%)

Query: 147 ANSKVKSSRKEFVGWGSRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKR 206
            +S     R EFVGWGSR L+EFL S+GKDT+  +S   ++  I+ Y  +  L  P  K+
Sbjct: 1   GSSGSSGKRFEFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKK 60

Query: 207 KIICDARLKALFGRKSVNKNSIPKLLTIHLAENLE 241
           K++CD RL  LFG +++ +  +  LL  H  EN +
Sbjct: 61  KVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKENQD 95
>3u1u_A RNA polymerase-associated protein RTF1 homolog; plus-3, transcription elongation, structural genomics, struc genomics consortium, SGC; 1.80A {Homo sapiens} PDB: 2db9_A Length = 137 Back     alignment and structure
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1 Length = 153 Back     alignment and structure
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Length = 93 Back     alignment and structure
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1 Length = 93 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
3u1u_A137 RNA polymerase-associated protein RTF1 homolog; pl 99.97
2bze_A153 KIAA0252 protein; human RTF1 PLUS3 domain, transcr 99.97
1v32_A101 AT5G08430, hypothetical protein RAFL09-47-K03; SWI 99.97
1v31_A93 Hypothetical protein RAFL11-05-P19; SWI/SNF comple 99.9
1uhr_A93 SWI/SNF related, matrix associated, actin dependen 99.9
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 97.26
3dac_M130 MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X 96.84
3fea_A100 MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, p 96.46
2z5s_M140 MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylat 96.34
1ycq_A107 MDM2, MDM2; anti-oncogene, DNA-binding, transcript 96.28
1z1m_A119 Ubiquitin-protein ligase E3 MDM2; peptide-binding 96.22
2axi_A115 Ubiquitin-protein ligase E3 MDM2; drug design, pro 95.63
>3u1u_A RNA polymerase-associated protein RTF1 homolog; plus-3, transcription elongation, structural genomics, struc genomics consortium, SGC; 1.80A {Homo sapiens} PDB: 2db9_A Back     alignment and structure
Probab=99.97  E-value=6.2e-33  Score=248.78  Aligned_cols=123  Identities=21%  Similarity=0.327  Sum_probs=108.6

Q ss_pred             cceeecccccchhhhchHHHHHHhhChhHHHhHhheeEEEEEeCCCCccCccceeEEEEeeEEeec-------ccchhhh
Q 037148          298 CFASVVPKNIKLVYLRKSLVEELSKQLETFEAKVMGSFVRVRSDPNDYLQKNSHQLVQVSGIHKTS-------VNAEILL  370 (463)
Q Consensus       298 ~~aaI~~~nIn~irL~Rs~~~~l~~dP~~F~~kvvGsFVRI~ig~~~~~~k~~YRL~qV~Gi~k~~-------~~t~~~L  370 (463)
                      .+.+ +.+||++|||+|+++++|++.| +|++.|+||||||+||+++  ++++||||||+||.++.       ++||+.|
T Consensus         6 ~~v~-~l~dl~~i~L~R~~l~~~~~~P-~Fe~~V~GcFVRv~ig~~~--~~~~Yrl~qI~gv~~~~k~Y~l~~~~T~~~L   81 (137)
T 3u1u_A            6 QPVS-LPEELNRVRLSRHKLERWCHMP-FFAKTVTGCFVRIGIGNHN--SKPVYRVAEITGVVETAKVYQLGGTRTNKGL   81 (137)
T ss_dssp             SBCC-SHHHHHTTBCCHHHHHHHTTST-THHHHHTTCEEEEEEEC------CEEEEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             CCCC-CHHHhcceEEEHHHHHHHhcCC-ChhHheEEEEEEEEeCCCC--CCccEEEEEEEEEEecCcccccCCceeeEEE
Confidence            3444 7899999999999999999999 6999999999999999997  35999999999998754       6678777


Q ss_pred             hh-CCC-ceeEeeeeccCCCCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHH
Q 037148          371 EL-SDR-VKWVPICNLSNDDFSEEECEDLRQRVKNGLASRPTVVELRQKAVCLHED  424 (463)
Q Consensus       371 ~~-~~~-~k~~~i~~iSn~~FTE~E~~rlrq~~~~~~~k~pTv~~l~~Ka~~i~~~  424 (463)
                      .+ +|. .++|+|++|||++|||+||++|++.|.++++++||+.+|++|+++||++
T Consensus        82 ~l~~g~~~r~~~~~~vSN~~fte~E~~~w~~~~~~~~~~~Pt~~~l~~K~~~i~~a  137 (137)
T 3u1u_A           82 QLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEA  137 (137)
T ss_dssp             EEEETTEEEEEEGGGBCSSCCCHHHHHHHHHHHHHHTCCCCBHHHHHHHHHHTCCC
T ss_pred             EEEeCCcceEEEeeeecCCCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhC
Confidence            77 455 6999999999999999999999999999999999999999999999864
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1 Back     alignment and structure
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Back     alignment and structure
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Back     alignment and structure
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1 Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio} Back     alignment and structure
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A Back     alignment and structure
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M Back     alignment and structure
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1 Back     alignment and structure
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens} Back     alignment and structure
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 463
d1v32a_101 a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl 1e-27
d2bzea1132 b.34.21.1 (A:345-476) RNA polymerase-associated pr 3e-22
d1uhra_93 a.42.1.1 (A:) SWI/SNF related regulator of chromat 5e-13
d1v31a_93 a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl 9e-13
>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101 Back     information, alignment and structure

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: Hypothetical protein AT5G08430 (rafl09-47-k03)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  103 bits (259), Expect = 1e-27
 Identities = 37/90 (41%), Positives = 54/90 (60%)

Query: 152 KSSRKEFVGWGSRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICD 211
              R EFVGWGSR L+EFL S+GKDT+  +S   ++  I+ Y  +  L  P  K+K++CD
Sbjct: 6   SGKRFEFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCD 65

Query: 212 ARLKALFGRKSVNKNSIPKLLTIHLAENLE 241
            RL  LFG +++ +  +  LL  H  EN +
Sbjct: 66  KRLVLLFGTRTIFRMKVYDLLEKHYKENQD 95
>d2bzea1 b.34.21.1 (A:345-476) RNA polymerase-associated protein RTF1 homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 132 Back     information, alignment and structure
>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]} Length = 93 Back     information, alignment and structure
>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 93 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
d2bzea1132 RNA polymerase-associated protein RTF1 homolog {Hu 99.98
d1v32a_101 Hypothetical protein AT5G08430 (rafl09-47-k03) {Th 99.95
d1v31a_93 Hypothetical protein AT5G14170 (rafl11-05-p19) {Th 99.88
d1uhra_93 SWI/SNF related regulator of chromatin (BRG1-assoc 99.88
d1ttva_107 MDM2 {African clawed frog (Xenopus laevis) [TaxId: 97.31
d2axia185 MDM2 {Human (Homo sapiens) [TaxId: 9606]} 97.21
d2dipa185 Zinc finger ZZ-type-containing protein 2 {Human (H 85.83
d1tota152 CREB-binding protein, CBP {Mouse (Mus musculus) [T 83.04
>d2bzea1 b.34.21.1 (A:345-476) RNA polymerase-associated protein RTF1 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Plus3-like
family: Plus3
domain: RNA polymerase-associated protein RTF1 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.5e-33  Score=249.21  Aligned_cols=121  Identities=21%  Similarity=0.345  Sum_probs=111.3

Q ss_pred             cccccchhhhchHHHHHHhhChhHHHhHhheeEEEEEeCCCCccCccceeEEEEeeEEeec-------ccchhhhhhC-C
Q 037148          303 VPKNIKLVYLRKSLVEELSKQLETFEAKVMGSFVRVRSDPNDYLQKNSHQLVQVSGIHKTS-------VNAEILLELS-D  374 (463)
Q Consensus       303 ~~~nIn~irL~Rs~~~~l~~dP~~F~~kvvGsFVRI~ig~~~~~~k~~YRL~qV~Gi~k~~-------~~t~~~L~~~-~  374 (463)
                      ++++|++|||+|+.+++|++.| +|++.|+||||||+||++++  +++||||||+||.++.       ++||+.|.+. |
T Consensus         3 ~~e~l~~irL~R~~l~~~~~~P-~Fe~~v~GcFVRv~ig~~~~--~~~Yrl~~I~gv~~~~k~Y~~~~~~T~~~L~l~~g   79 (132)
T d2bzea1           3 LPEELNRVRLSRHKLERWCHMP-FFAKTVTGCFVRIGIGNHNS--KPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHG   79 (132)
T ss_dssp             CHHHHHHSEECHHHHHHHSSSS-SCHHHHTTCEEEEESSTTSS--SCCEEEEEEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred             ChHHhhheEEeHHHHHHHHcCC-chHHhheeeEEEEEeCCCCC--CCceEEEEEEeeeecCcccccCCCcccEEEEEEEC
Confidence            4689999999999999999999 69999999999999997654  5899999999999865       7888888885 4


Q ss_pred             -CceeEeeeeccCCCCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHh
Q 037148          375 -RVKWVPICNLSNDDFSEEECEDLRQRVKNGLASRPTVVELRQKAVCLHEDIT  426 (463)
Q Consensus       375 -~~k~~~i~~iSn~~FTE~E~~rlrq~~~~~~~k~pTv~~l~~Ka~~i~~~i~  426 (463)
                       ..++|+|++|||++|||+||++|++.|+++++++||+.+|++|+++|++++|
T Consensus        80 ~~~~~~~l~~vSn~~fte~E~~~w~~~~~~~~~~~Pt~~~l~~K~~~i~~a~n  132 (132)
T d2bzea1          80 NDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALN  132 (132)
T ss_dssp             SCEEEECGGGBCCSCCCHHHHHHHHHHHHHHTCCCCBHHHHHHHHHHHHHHC-
T ss_pred             CceeEEEeEEEeCCCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence             3699999999999999999999999999999999999999999999999986
>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ttva_ a.42.1.1 (A:) MDM2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d2axia1 a.42.1.1 (A:25-109) MDM2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure