Citrus Sinensis ID: 037153

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
NCNLSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCFGCDGSLMLDDTASFISEKPQACPGVVSWADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMGSLIEAHGAHTIGLARCTTFREHIYNGWNIGISFTESLRQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRKVN
cccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHccccccccccccHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccccccc
ccccEccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEEcccccccccHHHHccccccHHHHHHHHHHHHHHHcccccccccEcccEcccccHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccHHHHccccccHHHHHHHHHcHHHHHHHHHHHHHHHcccccEcccccEcccEccEcc
ncnlskhhyrsscpQALSIVQAGVKAAVKNETRTAASLLRLHFydcfgcdgslmlddtasfisekpqacpgvvsWADILAIATRDsvvdlggpswkvrlerrdsttvsrtaantsirrptsNLSALISNFMGSLIeahgahtiglaRCTTFREHIYNGWNIGISFTESLRQicpasgngilhsgqelfngnsaNSLVKRYADDISVFVKdfpratikmgnispltgsagqirINCRKVN
ncnlskhhyrsscpqaLSIVQAGVKAAVKNETRTAASLLRLHFYDCFGCDGSLMLDDTASFISEKPQACPGVVSWADILAIATRdsvvdlggpswkvrlerrdsttvsrtaantsirrptsnlSALISNFMGSLIEAHGAHTIGLARCTTFREHIYNGWNIGISFTESLRQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFpratikmgnispltgsagqirincrkvn
NCNLSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCFGCDGSLMLDDTASFISEKPQACPGVVSWADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMGSLIEAHGAHTIGLARCTTFREHIYNGWNIGISFTESLRQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRKVN
**************QALSIVQAGVKAAVKNETRTAASLLRLHFYDCFGCDGSLMLDDTASFISEKPQACPGVVSWADILAIATRDSVVDLGGPSWKVRL***********************LSALISNFMGSLIEAHGAHTIGLARCTTFREHIYNGWNIGISFTESLRQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRI******
NCNLSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCFGCDGSLMLDDTASFISEKPQACPGVVSWADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMGSLIEAHGAHTIGLARCTTFREHIYNGWNIGISFTESLRQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRKVN
************CPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCFGCDGSLMLDDTASFISEKPQACPGVVSWADILAIATRDSVVDLGGPSWKVRLE*************TSIRRPTSNLSALISNFMGSLIEAHGAHTIGLARCTTFREHIYNGWNIGISFTESLRQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRKVN
***LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCFGCDGSLMLDDTASFISEKPQACPGVVSWADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMGSLIEAHGAHTIGLARCTTFREHIYNGWNIGISFTESLRQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRK**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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NCNLSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCFGCDGSLMLDDTASFISEKPQACPGVVSWADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMGSLIEAHGAHTIGLARCTTFREHIYNGWNIGISFTESLRQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRKVN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query239 2.2.26 [Sep-21-2011]
P22195316 Cationic peroxidase 1 OS= N/A no 0.987 0.746 0.464 2e-62
Q9FLC0324 Peroxidase 52 OS=Arabidop yes no 0.987 0.728 0.457 5e-62
A5H452321 Peroxidase 70 OS=Zea mays N/A no 0.966 0.719 0.451 9e-60
A7NY33321 Peroxidase 4 OS=Vitis vin no no 0.987 0.735 0.447 1e-59
P00434296 Peroxidase P7 OS=Brassica N/A no 0.987 0.797 0.440 2e-59
A5H454320 Peroxidase 66 OS=Zea mays N/A no 0.962 0.718 0.435 4e-55
Q9LVL2316 Peroxidase 67 OS=Arabidop no no 0.987 0.746 0.449 1e-54
Q0D3N0314 Peroxidase 2 OS=Oryza sat no no 0.966 0.735 0.424 3e-54
A2YPX3314 Peroxidase 2 OS=Oryza sat N/A no 0.966 0.735 0.424 3e-54
Q9SI16338 Peroxidase 15 OS=Arabidop no no 0.991 0.701 0.407 1e-53
>sp|P22195|PER1_ARAHY Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2 Back     alignment and function desciption
 Score =  239 bits (609), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 136/293 (46%), Positives = 169/293 (57%), Gaps = 57/293 (19%)

Query: 4   LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
           LS + Y + CP ALS +++ V +AV  E R  ASLLRLHF+DCF  GCD S++LDDT++F
Sbjct: 24  LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 83

Query: 62  ISEK---PQA-------------------CPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
             EK   P A                   CPGVVS ADILA+A RDSVV LGG SW V L
Sbjct: 84  TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 143

Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNF------MGSLIEAHGAHTIGLARCTTFRE 153
            RRDSTT S ++AN+ +  P  NLS LIS F         L+   GAHTIG A+CT FR 
Sbjct: 144 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 203

Query: 154 HIYNGWNIGISFTESLRQICPASG---------------------------NGILHSGQE 186
            IYN  NI  ++ +SL+  CP+ G                            G+LHS Q+
Sbjct: 204 RIYNESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQQ 263

Query: 187 LFNGNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRKVN 239
           LFNG S +S V  Y+++ + F  DF  A IKMGN+SPLTG++GQIR NCRK N
Sbjct: 264 LFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 316
Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.
Arachis hypogaea (taxid: 3818)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7
>sp|Q9FLC0|PER52_ARATH Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=2 SV=1 Back     alignment and function description
>sp|A5H452|PER70_MAIZE Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1 Back     alignment and function description
>sp|A7NY33|PER4_VITVI Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1 Back     alignment and function description
>sp|P00434|PERP7_BRARA Peroxidase P7 OS=Brassica rapa PE=1 SV=3 Back     alignment and function description
>sp|A5H454|PER66_MAIZE Peroxidase 66 OS=Zea mays GN=PER66 PE=1 SV=1 Back     alignment and function description
>sp|Q9LVL2|PER67_ARATH Peroxidase 67 OS=Arabidopsis thaliana GN=PER67 PE=2 SV=1 Back     alignment and function description
>sp|Q0D3N0|PER2_ORYSJ Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PRX112 PE=2 SV=1 Back     alignment and function description
>sp|A2YPX3|PER2_ORYSI Peroxidase 2 OS=Oryza sativa subsp. indica GN=PRX112 PE=3 SV=2 Back     alignment and function description
>sp|Q9SI16|PER15_ARATH Peroxidase 15 OS=Arabidopsis thaliana GN=PER15 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query239
205326623318 peroxidase 1 [Litchi chinensis] 1.0 0.751 0.560 9e-81
383081965333 peroxidase 2 [Eucalyptus pilularis] 0.995 0.714 0.538 7e-76
383081969333 peroxidase 2 [Eucalyptus globulus subsp. 0.995 0.714 0.532 2e-75
383081963333 peroxidase 2 [Eucalyptus pilularis] gi|3 0.995 0.714 0.535 9e-75
449811543318 peroxidase 2 [Pyrus communis] 1.0 0.751 0.528 5e-73
393387663317 putative peroxidase [Nepenthes alata] 0.987 0.744 0.494 2e-68
357461493318 Peroxidase [Medicago truncatula] gi|3554 0.987 0.742 0.505 3e-68
393387665317 putative peroxidase [Nepenthes alata] 0.987 0.744 0.494 4e-68
356506704319 PREDICTED: cationic peroxidase 1-like [G 0.987 0.739 0.488 7e-67
393387661317 putative peroxidase [Nepenthes alata] 0.987 0.744 0.491 3e-66
>gi|205326623|gb|ACI03401.1| peroxidase 1 [Litchi chinensis] Back     alignment and taxonomy information
 Score =  305 bits (782), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 166/296 (56%), Positives = 191/296 (64%), Gaps = 57/296 (19%)

Query: 1   NCNLSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDT 58
           N  L  + Y S+CPQALSIV  GV AA+KNETR  ASLLRLHF+DCF  GCDGSL+LDDT
Sbjct: 22  NGQLCPNFYESTCPQALSIVHKGVVAAIKNETRIGASLLRLHFHDCFVNGCDGSLLLDDT 81

Query: 59  ASFISEK----------------------PQACPGVVSWADILAIATRDSVVDLGGPSWK 96
           ++F+ EK                       +ACPGVVS AD+LAIA RDSVV LGGPSWK
Sbjct: 82  STFVGEKTAVPNNISVRGFNVVDQIKAKLEKACPGVVSCADLLAIAARDSVVHLGGPSWK 141

Query: 97  VRLERRDSTTVSRTAANTSIRRPTSNLSALISNF------MGSLIEAHGAHTIGLARCTT 150
           VRL RRDSTT SR  ANTSI  PTSNLSALIS+F      +  L+   G+HTIGLARCT+
Sbjct: 142 VRLGRRDSTTASRALANTSIPPPTSNLSALISSFSAQGLSLKDLVALSGSHTIGLARCTS 201

Query: 151 FREHIYNGWNIGISFTESLRQICPASGN---------------------------GILHS 183
           FR H+YN  NI  SF +SLR+ CP SGN                           G+LHS
Sbjct: 202 FRGHVYNDTNIDSSFAQSLRRKCPRSGNDNVLANLDRQTPFCFDKLYYDNLLKKKGLLHS 261

Query: 184 GQELFNGNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRKVN 239
            Q+LF G SA+  VK+YA++ S F KDF  A +KMGNI PLTG AGQIRINCRKVN
Sbjct: 262 DQQLFKGGSADPFVKKYANNTSAFFKDFAGAMVKMGNIKPLTGRAGQIRINCRKVN 317

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|383081965|dbj|BAM05635.1| peroxidase 2 [Eucalyptus pilularis] Back     alignment and taxonomy information
>gi|383081969|dbj|BAM05637.1| peroxidase 2 [Eucalyptus globulus subsp. globulus] Back     alignment and taxonomy information
>gi|383081963|dbj|BAM05634.1| peroxidase 2 [Eucalyptus pilularis] gi|383081967|dbj|BAM05636.1| peroxidase 2 [Eucalyptus pyrocarpa] Back     alignment and taxonomy information
>gi|449811543|gb|AGF25269.1| peroxidase 2 [Pyrus communis] Back     alignment and taxonomy information
>gi|393387663|dbj|BAM28608.1| putative peroxidase [Nepenthes alata] Back     alignment and taxonomy information
>gi|357461493|ref|XP_003601028.1| Peroxidase [Medicago truncatula] gi|355490076|gb|AES71279.1| Peroxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|393387665|dbj|BAM28609.1| putative peroxidase [Nepenthes alata] Back     alignment and taxonomy information
>gi|356506704|ref|XP_003522116.1| PREDICTED: cationic peroxidase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|393387661|dbj|BAM28607.1| putative peroxidase [Nepenthes alata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query239
TAIR|locus:2161283316 AT5G58390 [Arabidopsis thalian 0.506 0.382 0.519 2e-59
TAIR|locus:2161193325 AT5G58400 [Arabidopsis thalian 0.489 0.36 0.504 1.1e-55
TAIR|locus:2028280346 AT1G44970 [Arabidopsis thalian 0.464 0.320 0.467 4.5e-51
TAIR|locus:2170204335 PA2 "peroxidase 2" [Arabidopsi 0.464 0.331 0.419 2.9e-49
UNIPROTKB|Q9LEH3327 pod "Peroxidase 15" [Ipomoea b 0.468 0.342 0.432 3.4e-49
TAIR|locus:2154925336 AT5G66390 [Arabidopsis thalian 0.464 0.330 0.427 2e-47
TAIR|locus:2170214358 AT5G06730 [Arabidopsis thalian 0.464 0.310 0.387 2.1e-47
TAIR|locus:2080928344 AT3G50990 [Arabidopsis thalian 0.548 0.380 0.381 2.5e-46
TAIR|locus:2153529324 PRX52 "peroxidase 52" [Arabido 0.527 0.388 0.529 1.1e-44
TAIR|locus:2012428336 AT1G68850 [Arabidopsis thalian 0.464 0.330 0.416 4e-44
TAIR|locus:2161283 AT5G58390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 285 (105.4 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
 Identities = 68/131 (51%), Positives = 80/131 (61%)

Query:    57 DTASFISEKPQACPGVVSWADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTS- 115
             D   F  EK   CPG+VS ADILAI  RDSV+ LGGP W V+L RRDSTT +  AAN+  
Sbjct:   100 DKIKFKVEK--MCPGIVSCADILAITARDSVLLLGGPGWSVKLGRRDSTTANFAAANSGV 157

Query:   116 IRRPTSNLSALISNFMGS------LIEAHGAHTIGLARCTTFREHIYNGWNIGISFTESL 169
             I  P + LS LI+ F         ++   GAHTIG A+C TFR  IYN  NI  SF  S 
Sbjct:   158 IPPPITTLSNLINRFKAQGLSTRDMVALSGAHTIGRAQCVTFRNRIYNASNIDTSFAISK 217

Query:   170 RQICPA-SGNG 179
             R+ CPA SG+G
Sbjct:   218 RRNCPATSGSG 228
GO:0004601 "peroxidase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0006979 "response to oxidative stress" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2161193 AT5G58400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028280 AT1G44970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170204 PA2 "peroxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9LEH3 pod "Peroxidase 15" [Ipomoea batatas (taxid:4120)] Back     alignment and assigned GO terms
TAIR|locus:2154925 AT5G66390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170214 AT5G06730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080928 AT3G50990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153529 PRX52 "peroxidase 52" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012428 AT1G68850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.11.1.70.914
3rd Layer1.11.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00037460001
SubName- Full=Chromosome chr8 scaffold_88, whole genome shotgun sequence; (323 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
cd00693298 cd00693, secretory_peroxidase, Horseradish peroxid 3e-93
PLN03030324 PLN03030, PLN03030, cationic peroxidase; Provision 5e-39
pfam00141180 pfam00141, peroxidase, Peroxidase 7e-37
cd00314255 cd00314, plant_peroxidase_like, Heme-dependent per 7e-13
>gnl|CDD|173827 cd00693, secretory_peroxidase, Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information 
 Score =  275 bits (705), Expect = 3e-93
 Identities = 121/302 (40%), Positives = 156/302 (51%), Gaps = 70/302 (23%)

Query: 3   NLSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTAS 60
            LS   Y  SCP A SIV++ V+AAVK + R AA+LLRLHF+DCF  GCD S++LD TA+
Sbjct: 1   QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTAN 60

Query: 61  FISEK---P------------------QACPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
             SEK   P                   ACPGVVS ADILA+A RD+VV  GGPS++V L
Sbjct: 61  NTSEKDAPPNLSLRGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPL 120

Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNF---------MGSLIEAHGAHTIGLARCTT 150
            RRD   VS      ++  P  ++S LIS F         + +L    GAHTIG A C++
Sbjct: 121 GRRDGR-VSSANDVGNLPSPFFSVSQLISLFASKGLTVTDLVALS---GAHTIGRAHCSS 176

Query: 151 FREHIYNGWNIGI-------SFTESLRQICPASGN------------------------- 178
           F + +YN    G        ++   LR+ CPA G+                         
Sbjct: 177 FSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLA 236

Query: 179 --GILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCR 236
             G+L S Q L +     ++V RYA +   F +DF  A +KMGNI  LTGS G+IR NCR
Sbjct: 237 GRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCR 296

Query: 237 KV 238
            V
Sbjct: 297 VV 298

Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. Length = 298
>gnl|CDD|215545 PLN03030, PLN03030, cationic peroxidase; Provisional Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information
>gnl|CDD|173823 cd00314, plant_peroxidase_like, Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 239
PLN03030324 cationic peroxidase; Provisional 100.0
cd00693298 secretory_peroxidase Horseradish peroxidase and re 100.0
PLN02608289 L-ascorbate peroxidase 100.0
cd00691253 ascorbate_peroxidase Ascorbate peroxidases and cyt 100.0
PLN02364250 L-ascorbate peroxidase 1 100.0
PLN02879251 L-ascorbate peroxidase 100.0
cd00692328 ligninase Ligninase and other manganese-dependent 100.0
PF00141230 peroxidase: Peroxidase; InterPro: IPR002016 Peroxi 100.0
cd00314255 plant_peroxidase_like Heme-dependent peroxidases s 100.0
cd00649409 catalase_peroxidase_1 N-terminal catalytic domain 100.0
cd08201264 plant_peroxidase_like_1 Uncharacterized family of 100.0
TIGR00198 716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
PRK15061 726 catalase/hydroperoxidase HPI(I); Provisional 100.0
cd08200297 catalase_peroxidase_2 C-terminal non-catalytic dom 100.0
TIGR00198716 cat_per_HPI catalase/peroxidase HPI. Note that the 99.95
PRK15061726 catalase/hydroperoxidase HPI(I); Provisional 99.94
COG0376 730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.9
COG0376730 KatG Catalase (peroxidase I) [Inorganic ion transp 98.23
>PLN03030 cationic peroxidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3e-87  Score=606.94  Aligned_cols=234  Identities=40%  Similarity=0.681  Sum_probs=220.5

Q ss_pred             CCCCccccccCChhHHHHHHHHHHHHHHhchhhhhhhhhhhhcccC--CCCCcccccCCCCCCCCCC-------------
Q 037153            2 CNLSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASFISEKP-------------   66 (239)
Q Consensus         2 ~~l~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDc~--GcDgSill~~~~~~~~Ek~-------------   66 (239)
                      ++|+++||++|||++|+||+++|++++.+||+++|++|||+|||||  ||||||||+.+.   .||+             
T Consensus        23 ~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~~---~Ek~a~~N~~l~Gf~~i   99 (324)
T PLN03030         23 QGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGSN---TEKTALPNLLLRGYDVI   99 (324)
T ss_pred             ccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCCc---ccccCCCCcCcchHHHH
Confidence            4699999999999999999999999999999999999999999999  999999998532   3443             


Q ss_pred             --------cCCCCCCcHHHHHHHhhhhHhhhcCCCCccccccccCCCCCcccccCCCCCCCCCCHHHHHHHhHH------
Q 037153           67 --------QACPGVVSWADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMG------  132 (239)
Q Consensus        67 --------~~cp~~VScADilalaar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~------  132 (239)
                              ++||++|||||||++||||||+++|||.|+|++||||+++|.+.++. +||+|+.++++|++.|++      
T Consensus       100 ~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~~~  178 (324)
T PLN03030        100 DDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGLNTQ  178 (324)
T ss_pred             HHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCCCHH
Confidence                    78999999999999999999999999999999999999999887775 899999999999999999      


Q ss_pred             hHHHHhccccccccccCCCCCCccC--------CCCCChHHHHHHHhhCCCCC---------------------------
Q 037153          133 SLIEAHGAHTIGLARCTTFREHIYN--------GWNIGISFTESLRQICPASG---------------------------  177 (239)
Q Consensus       133 dlVaLsGaHTiG~ahc~~f~~r~~~--------dp~~d~~y~~~L~~~cp~~~---------------------------  177 (239)
                      |||+||||||||++||.+|.+|+||        ||+||+.|+++|++.||..+                           
T Consensus       179 DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~  258 (324)
T PLN03030        179 DLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKNG  258 (324)
T ss_pred             HheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHHhc
Confidence            9999999999999999999999995        78999999999999998310                           


Q ss_pred             CCcccCCcccccCcchHHHHHHHhhCH----HHHHHHHHHHHHHHhcCCCCCCCCCcccccCccCC
Q 037153          178 NGILHSGQELFNGNSANSLVKRYADDI----SVFVKDFPRATIKMGNISPLTGSAGQIRINCRKVN  239 (239)
Q Consensus       178 ~glL~SD~~L~~d~~t~~~V~~yA~d~----~~F~~~Fa~Am~Km~~l~v~tg~~GeIR~~C~~~N  239 (239)
                      +|+|+|||+|++|++|+++|+.||.|+    +.|+++|++||+|||+|+||||.+|||||+|+++|
T Consensus       259 rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN  324 (324)
T PLN03030        259 RGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN  324 (324)
T ss_pred             CCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence            899999999999999999999999875    59999999999999999999999999999999998

>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information
>PLN02608 L-ascorbate peroxidase Back     alignment and domain information
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>PLN02364 L-ascorbate peroxidase 1 Back     alignment and domain information
>PLN02879 L-ascorbate peroxidase Back     alignment and domain information
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases Back     alignment and domain information
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
1sch_A294 Peanut Peroxidase Length = 294 1e-63
1pa2_A306 Arabidopsis Thaliana Peroxidase A2 Length = 306 9e-49
4a5g_A308 Raphanus Sativus Anionic Peroxidase. Length = 308 8e-46
2ylj_A306 Horse Radish Peroxidase, Mutant S167y Length = 306 3e-42
1gwo_A309 Recombinant Horseradish Peroxidase C1a Ala170gln Le 4e-42
1gx2_A309 Recombinant Horseradish Peroxidase Phe209ser Comple 4e-42
3atj_A309 Heme Ligand Mutant Of Recombinant Horseradish Perox 7e-42
1w4w_A323 Ferric Horseradish Peroxidase C1a In Complex With F 7e-42
6atj_A308 Recombinant Horseradish Peroxidase C Complex With F 8e-42
2atj_A308 Recombinant Horseradish Peroxidase Complex With Ben 8e-42
1atj_A306 Recombinant Horseradish Peroxidase C1a Length = 306 9e-42
1gwu_A309 Recombinant Horseradish Peroxidase C1a Ala140gly Le 1e-41
4atj_A309 Distal Heme Pocket Mutant (H42e) Of Recombinant Hor 2e-41
1gw2_A308 Recombinant Horseradish Peroxidase C1a Thr171ser In 3e-41
1qgj_A300 Arabidopsis Thaliana Peroxidase N Length = 300 3e-41
1kzm_A308 Distal Heme Pocket Mutant (r38s/h42e) Of Recombinan 1e-40
1fhf_A304 The Structure Of Soybean Peroxidase Length = 304 3e-37
1bgp_A309 Crystal Structure Of Barley Grain Peroxidase 1 Leng 2e-31
3hdl_A304 Crystal Structure Of Highly Glycosylated Peroxidase 2e-31
>pdb|1SCH|A Chain A, Peanut Peroxidase Length = 294 Back     alignment and structure 
Iteration: 1

 Score =  239 bits (609), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 136/293 (46%), Positives = 169/293 (57%), Gaps = 57/293 (19%)
Query: 4   LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
           LS + Y + CP ALS +++ V +AV  E R  ASLLRLHF+DCF  GCD S++LDDT++F
Sbjct: 2   LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 62  ISEK---PQA-------------------CPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
             EK   P A                   CPGVVS ADILA+A RDSVV LGG SW V L
Sbjct: 62  TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNF------MGSLIEAHGAHTIGLARCTTFRE 153
            RRDSTT S ++AN+ +  P  NLS LIS F         L+   GAHTIG A+CT FR 
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 154 HIYNGWNIGISFTESLRQICPASG---------------------------NGILHSGQE 186
            IYN  NI  ++ +SL+  CP+ G                            G+LHS Q+
Sbjct: 182 RIYNESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQQ 241
Query: 187 LFNGNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRKVN 239
           LFNG S +S V  Y+++ + F  DF  A IKMGN+SPLTG++GQIR NCRK N
Sbjct: 242 LFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2 Length = 306 Back     alignment and structure
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase. Length = 308 Back     alignment and structure
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y Length = 306 Back     alignment and structure
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln Length = 309 Back     alignment and structure
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate Length = 323 Back     alignment and structure
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With Benzhydroxamic Acid Length = 308 Back     alignment and structure
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Length = 306 Back     alignment and structure
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly Length = 309 Back     alignment and structure
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N Length = 300 Back     alignment and structure
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant Horseradish Peroxidase C (hrp C) Length = 308 Back     alignment and structure
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase Length = 304 Back     alignment and structure
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 Length = 309 Back     alignment and structure
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree Length = 304 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 1e-109
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 1e-106
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 1e-104
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 1e-104
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 1e-104
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 1e-104
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 2e-95
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 8e-55
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 3e-46
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 3e-40
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 1e-38
2e39_A344 Peroxidase; heme protein, coordination geometry of 1e-37
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 9e-36
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 8e-35
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Length = 294 Back     alignment and structure
 Score =  314 bits (807), Expect = e-109
 Identities = 135/293 (46%), Positives = 168/293 (57%), Gaps = 57/293 (19%)

Query: 4   LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
           LS + Y + CP ALS +++ V +AV  E R  ASLLRLHF+DCF  GCD S++LDDT++F
Sbjct: 2   LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61

Query: 62  ISEK---P-------------------QACPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
             EK   P                     CPGVVS ADILA+A RDSVV LGG SW V L
Sbjct: 62  TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121

Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNF------MGSLIEAHGAHTIGLARCTTFRE 153
            RRDSTT S ++AN+ +  P  NLS LIS F         L+   GAHTIG A+CT FR 
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181

Query: 154 HIYNGWNIGISFTESLRQICPASGN---------------------------GILHSGQE 186
            IYN  NI  ++ +SL+  CP+ G                            G+LHS Q+
Sbjct: 182 RIYNESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQQ 241

Query: 187 LFNGNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRKVN 239
           LFNG S +S V  Y+++ + F  DF  A IKMGN+SPLTG++GQIR NCRK N
Sbjct: 242 LFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} Length = 304 Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Length = 304 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Length = 306 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Length = 309 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Length = 309 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Length = 300 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Length = 295 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* Length = 331 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Length = 261 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Length = 343 Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Length = 344 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Length = 357 Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} Length = 338 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query239
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 100.0
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 100.0
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 100.0
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 100.0
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 100.0
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 100.0
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 100.0
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 100.0
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 100.0
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 100.0
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 100.0
2e39_A344 Peroxidase; heme protein, coordination geometry of 100.0
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 100.0
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 100.0
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 100.0
2cca_A 740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1ub2_A 720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 100.0
1itk_A 731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
1u2k_A309 Peroxidase/catalase HPI; KATG, catalase-peroxidase 100.0
3ut2_A 764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
3n3r_A 748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3vli_A 737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 100.0
1itk_A731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
2cca_A740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1ub2_A720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3vli_A737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3n3r_A748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3ut2_A764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0 Back     alignment and structure
Probab=100.00  E-value=4e-90  Score=622.57  Aligned_cols=236  Identities=42%  Similarity=0.689  Sum_probs=225.3

Q ss_pred             CCccccccCChhHHHHHHHHHHHHHHhchhhhhhhhhhhhcccC--CCCCcccccCCCCCCCCCC---------------
Q 037153            4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASFISEKP---------------   66 (239)
Q Consensus         4 l~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDc~--GcDgSill~~~~~~~~Ek~---------------   66 (239)
                      |+++||++|||++|+|||+.|++++.+||+++|+||||||||||  ||||||||++++.+.+||+               
T Consensus         2 L~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDgSiLld~t~~~~~Ek~~~~N~~~lrgf~vid   81 (304)
T 3hdl_A            2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEKDAIPNNPSLRGFEVIT   81 (304)
T ss_dssp             CEETTTTTTCTTHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHTTTSSSSGGGCCCBTTBCCGGGSTTTTTTCCCHHHHH
T ss_pred             CccChhhCcCcCHHHHHHHHHHHHHHhCCcchHHHHHHheecccCCCCCeeeeecCCCCCcccccCCCcccchHHHHHHH
Confidence            88999999999999999999999999999999999999999999  9999999998766556654               


Q ss_pred             -------cCCCCCCcHHHHHHHhhhhHhhhcCCCCccccccccCCCCCcccccCCCCCCCCCCHHHHHHHhHH------h
Q 037153           67 -------QACPGVVSWADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMG------S  133 (239)
Q Consensus        67 -------~~cp~~VScADilalaar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~------d  133 (239)
                             ++||++|||||||+||||+||+++|||.|+|++||+|+++++..+++++||+|+.++++|++.|++      |
T Consensus        82 ~iK~~le~~Cp~~VScADilalAardav~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d  161 (304)
T 3hdl_A           82 AAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADE  161 (304)
T ss_dssp             HHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHCCCCCCEECCCBCSCCCHHHHHHHSCCTTCCHHHHHHHHHTTTCCHHH
T ss_pred             HHHHHHHhhCCCCccHHHHHHHHHhhhhhccCCCccccccCccCCCCCCccccccCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence                   579999999999999999999999999999999999999999888777899999999999999998      9


Q ss_pred             HHHHhccccccccccCCCCCCccC-------CCCCChHHHHHHHhhCCC--C--C-------------------------
Q 037153          134 LIEAHGAHTIGLARCTTFREHIYN-------GWNIGISFTESLRQICPA--S--G-------------------------  177 (239)
Q Consensus       134 lVaLsGaHTiG~ahc~~f~~r~~~-------dp~~d~~y~~~L~~~cp~--~--~-------------------------  177 (239)
                      |||||||||||++||.+|.+|+||       ||++|+.|++.|+..||.  +  .                         
T Consensus       162 ~VaLsGaHTiG~ahC~~f~~Rly~f~~~~~~DP~ld~~~a~~L~~~Cp~~~~~~~~~~~~lD~~TP~~FDN~Yy~nL~~~  241 (304)
T 3hdl_A          162 MVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQLT  241 (304)
T ss_dssp             HHHHGGGGGSSEEEGGGTGGGTSSCSSSSSSCTTSCHHHHHHHHHHSCTTCCTTSCCEEESCSSSTTSCSTHHHHHHHTT
T ss_pred             hhhhhccccccccccchhhhhhcccCCCCCCCCcccHHHHHHHhccCCCCCCCCCccccCCCCCCcccccHHHHHHHHhC
Confidence            999999999999999999999986       899999999999999984  2  1                         


Q ss_pred             CCcccCCcccccCcchHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCccCC
Q 037153          178 NGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRKVN  239 (239)
Q Consensus       178 ~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~l~v~tg~~GeIR~~C~~~N  239 (239)
                      +|||+|||+|++|++|+++|++||.||+.||++|++||+||++|+||||.+||||++|++||
T Consensus       242 ~glL~SDq~L~~d~~t~~~V~~yA~~~~~F~~~Fa~AmvKmg~igv~tg~~GeIR~~C~~~N  303 (304)
T 3hdl_A          242 LGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVN  303 (304)
T ss_dssp             CCCSHHHHGGGSSHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCC
T ss_pred             cCCCCCCHHHhcCccHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCCCCCCCeeeCCccccC
Confidence            89999999999999999999999999999999999999999999999999999999999998
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A* Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A* Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0 Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ... Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 239
d1pa2a_306 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 1e-74
d1scha_294 a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hy 9e-74
d1fhfa_304 a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine m 1e-73
d1gwua_307 a.93.1.1 (A:) Plant peroxidase {Horseradish (Armor 3e-70
d1qgja_300 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 3e-65
d1bgpa_309 a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vu 6e-64
d1yyda1357 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) { 7e-39
d2e39a1336 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) { 4e-36
d1llpa_343 a.93.1.1 (A:) Fungal peroxidase (ligninase) {White 7e-36
d1iyna_275 a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco 1e-28
d1oafa_250 a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glyci 2e-24
d2euta1291 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {B 6e-23
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Length = 306 Back     information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]

 Score =  226 bits (577), Expect = 1e-74
 Identities = 111/302 (36%), Positives = 161/302 (53%), Gaps = 66/302 (21%)

Query: 4   LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
           L+   Y  +CP A +IV++ ++ A++++TR  ASL+RLHF+DCF  GCD S++LDDT S 
Sbjct: 3   LNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSI 62

Query: 62  ISEK----------------------PQACPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
            SEK                        ACPGVVS +D+LA+A+  SV   GGPSW V L
Sbjct: 63  QSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLL 122

Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNFMGSLIEAH------GAHTIGLARCTTFRE 153
            RRDS T +   AN+SI  P  +LS +   F    +  +      GAHT G ARC  F  
Sbjct: 123 GRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNN 182

Query: 154 HIYNG-------WNIGISFTESLRQICPASGN---------------------------G 179
            ++N          +  +   +L+Q+CP +G+                           G
Sbjct: 183 RLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSNDG 242

Query: 180 ILHSGQELFN--GNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRK 237
           +L S QELF+  G+S  ++V  +A + ++F + F ++ I MGNISPLTGS G+IR++C+K
Sbjct: 243 LLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKK 302

Query: 238 VN 239
           VN
Sbjct: 303 VN 304
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 294 Back     information, alignment and structure
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 304 Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Length = 307 Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Length = 309 Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 357 Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Length = 336 Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 343 Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 275 Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 250 Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 291 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query239
d1fhfa_304 Plant peroxidase {Soybean (Glycine max) [TaxId: 38 100.0
d1pa2a_306 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1bgpa_309 Plant peroxidase {Barley (Hordeum vulgare), peroxi 100.0
d1gwua_307 Plant peroxidase {Horseradish (Armoracia rusticana 100.0
d1scha_294 Plant peroxidase {Peanut (Arachis hypogaea) [TaxId 100.0
d1qgja_300 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1yyda1357 Fungal peroxidase (ligninase) {Basidomycetos fungu 100.0
d1oafa_250 Ascorbate peroxidase {Soybean (Glycine max) [TaxId 100.0
d1iyna_275 Ascorbate peroxidase {Common tobacco (Nicotiana ta 100.0
d2e39a1336 Fungal peroxidase (ligninase) {Arthromyces ramosus 100.0
d1llpa_343 Fungal peroxidase (ligninase) {White rot basidiomy 100.0
d2euta1291 Cytochrome c peroxidase, CCP {Baker's yeast (Sacch 100.0
d1mwva2308 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1ub2a2294 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 100.0
d1u2ka_292 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.97
d1itka2308 Catalase-peroxidase KatG {Archaeon Haloarcula mari 99.97
d1mwva1406 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.97
d1itka1406 Catalase-peroxidase KatG {Archaeon Haloarcula mari 99.97
d2ccaa1410 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.96
d1ub2a1406 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.96
d2ccaa2285 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.92
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=6.6e-88  Score=607.42  Aligned_cols=237  Identities=43%  Similarity=0.746  Sum_probs=225.5

Q ss_pred             CCCccccccCChhHHHHHHHHHHHHHHhchhhhhhhhhhhhcccC--CCCCcccccCCCCCCCCCC--------------
Q 037153            3 NLSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASFISEKP--------------   66 (239)
Q Consensus         3 ~l~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDc~--GcDgSill~~~~~~~~Ek~--------------   66 (239)
                      ||+.+||++|||++|+||+++|++++.+||+++|+||||+|||||  ||||||||++++.+.+||+              
T Consensus         1 qL~~~~Y~~sCp~~e~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDgSill~~~~~~~~E~~~~~N~~~~~g~~~i   80 (304)
T d1fhfa_           1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTIESEQDALPNINSIRGLDVV   80 (304)
T ss_dssp             CCBTTTTTTTSTTHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTTCSSSGGGCCCCSSCCCGGGSTTTTTTCCCHHHH
T ss_pred             CCCCccccccCcCHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhccCCCCeeEeecCCCCccccccCCcccccchhHHHH
Confidence            899999999999999999999999999999999999999999999  9999999998766666655              


Q ss_pred             --------cCCCCCCcHHHHHHHhhhhHhhhcCCCCccccccccCCCCCcccccCCCCCCCCCCHHHHHHHhHH------
Q 037153           67 --------QACPGVVSWADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMG------  132 (239)
Q Consensus        67 --------~~cp~~VScADilalaar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~------  132 (239)
                              ..||++|||||||+||||+||+++|||+|+|++||+|+++|+..++..+||.|+.++++|++.|++      
T Consensus        81 d~iK~~le~~cp~~VScADIlalAardAv~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~  160 (304)
T d1fhfa_          81 NDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTL  160 (304)
T ss_dssp             HHHHHHHHTTSTTTSCHHHHHHHHHHHHHHTTTCCCCCCCBCCCBCSCCCHHHHHHHSCCTTCCHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHhhCCCccCHHHHHHHHHhhhhhhcCCCcccccCCCcCcCccccccccccCCCCCCCHHHHHHHHHHcCCCHH
Confidence                    889999999999999999999999999999999999999999887777899999999999999998      


Q ss_pred             hHHHHhccccccccccCCCCCCccC-------CCCCChHHHHHHHhhCCCCC---------------------------C
Q 037153          133 SLIEAHGAHTIGLARCTTFREHIYN-------GWNIGISFTESLRQICPASG---------------------------N  178 (239)
Q Consensus       133 dlVaLsGaHTiG~ahc~~f~~r~~~-------dp~~d~~y~~~L~~~cp~~~---------------------------~  178 (239)
                      ||||||||||||++||.+|..|+|+       ||.+|+.|...|+..||..+                           +
T Consensus       161 d~VaLsGaHTiG~ahc~~~~~rl~~~~~~~~~d~~~~~~~~~~L~~~c~~~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~~  240 (304)
T d1fhfa_         161 DLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLN  240 (304)
T ss_dssp             HHHHHGGGGGSCEEEGGGTGGGTSCGGGSSSCCTTSCHHHHHHHHHHSCSSCSSCCEEESCSSSTTSCSTHHHHHHHTTC
T ss_pred             HHHHHhhhhhhcccccccccccccCCCCCCCCCcccCHHHHHHHHHhcCCCCCCCcccccCCCCCCccccHHHHHHhhcC
Confidence            9999999999999999999999985       67999999999999998532                           7


Q ss_pred             CcccCCcccccCc--chHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCccCC
Q 037153          179 GILHSGQELFNGN--SANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRKVN  239 (239)
Q Consensus       179 glL~SD~~L~~d~--~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~l~v~tg~~GeIR~~C~~~N  239 (239)
                      |+|+|||+|+.||  +|+++|++||.||++|+++|++||+||++|+||||.+||||++|+++|
T Consensus       241 glL~SD~~L~~dp~~~t~~~V~~yA~d~~~F~~~F~~Am~Km~~lgv~tg~~GeiR~~C~~~N  303 (304)
T d1fhfa_         241 GLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVN  303 (304)
T ss_dssp             CSSHHHHTTTSSTTCSSHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCC
T ss_pred             cccHhhHHHHhCCCchHHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccCcccCcC
Confidence            8999999999996  799999999999999999999999999999999999999999999998
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure